Citrus Sinensis ID: 000384
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1590 | 2.2.26 [Sep-21-2011] | |||||||
| Q5N870 | 1651 | Endoribonuclease Dicer ho | yes | no | 0.946 | 0.911 | 0.493 | 0.0 | |
| Q9LXW7 | 1580 | Endoribonuclease Dicer ho | yes | no | 0.937 | 0.943 | 0.493 | 0.0 | |
| Q7XD96 | 1637 | Endoribonuclease Dicer ho | no | no | 0.954 | 0.926 | 0.471 | 0.0 | |
| Q8LMR2 | 1883 | Endoribonuclease Dicer ho | no | no | 0.878 | 0.741 | 0.293 | 1e-178 | |
| P84634 | 1702 | Dicer-like protein 4 OS=A | no | no | 0.881 | 0.823 | 0.290 | 1e-171 | |
| A7LFZ6 | 1657 | Endoribonuclease Dicer ho | no | no | 0.826 | 0.792 | 0.314 | 1e-168 | |
| Q3EBC8 | 1388 | Endoribonuclease Dicer ho | no | no | 0.756 | 0.866 | 0.312 | 1e-160 | |
| Q10HL3 | 1410 | Endoribonuclease Dicer ho | no | no | 0.761 | 0.858 | 0.302 | 1e-159 | |
| Q69LX2 | 1377 | Endoribonuclease Dicer ho | no | no | 0.752 | 0.868 | 0.293 | 1e-149 | |
| Q9SP32 | 1909 | Endoribonuclease Dicer ho | no | no | 0.482 | 0.401 | 0.335 | 1e-118 |
| >sp|Q5N870|DCL3A_ORYSJ Endoribonuclease Dicer homolog 3a OS=Oryza sativa subsp. japonica GN=DCL3A PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 1489 bits (3856), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 817/1656 (49%), Positives = 1051/1656 (63%), Gaps = 151/1656 (9%)
Query: 43 NFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPT 102
+F PR YQL V+EVA RRNTIA+L+TGAGKTMIAVMLIK+ + ++ K+IIFLAPT
Sbjct: 29 DFTPRRYQLDVYEVAMRRNTIAMLDTGAGKTMIAVMLIKEFGKINRTKNAGKVIIFLAPT 88
Query: 103 VHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA 162
V LV QQ +VI +HTDFEVE+YYGAKGVD+W WQ++I+K V+VMTPQ+ L ALR A
Sbjct: 89 VQLVTQQCEVIEIHTDFEVEQYYGAKGVDQWTGPRWQEQISKYQVMVMTPQVFLQALRNA 148
Query: 163 FLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDC 222
FL LD+V ++ DECHHATGNHPYT+IMKEFYHKS++KP VFGMTASPV+RKG+SS +DC
Sbjct: 149 FLILDMVSLMIFDECHHATGNHPYTRIMKEFYHKSEHKPSVFGMTASPVIRKGISSHLDC 208
Query: 223 EGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFD 282
EGQ ELE+ LD++++T+ D+ E+E VPSAKE CR+YD C DL +L V SK+D
Sbjct: 209 EGQFCELENLLDAKIYTVSDREEIEFCVPSAKEMCRYYDSKPVCFEDLSEELGVLCSKYD 268
Query: 283 ASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEK--- 339
A +++LQ + + YKD DD K +++LS AKI YCLD++GLICA EA KIC+E+
Sbjct: 269 ALITELQNKRSDMYKDADDITKESKRRLSKSIAKICYCLDDVGLICASEATKICIERGQE 328
Query: 340 ------VLKAQEE------CEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYS 387
V+ A ++ ++ ++S F EE LH+I L + L+
Sbjct: 329 KGWLKEVVDATDQQTDANGSRLFAENSALHMKFFEEALHLIDKRLQQGIDMLLNSESGCV 388
Query: 388 KAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAY 447
+A GYIS KL+EL+Q+F SF S C+IFV+R I A+V++R +KK+ L H TV++
Sbjct: 389 EAAKTGYISPKLYELIQIFHSFSNSRHARCLIFVDRKITARVIDRMIKKIGHLAHFTVSF 448
Query: 448 LTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSS 507
LTG +SVDALTPK+QK+ L+SFR GKVNLLF TDV EEG+HVP CS VIRFDLP+T S
Sbjct: 449 LTGGRSSVDALTPKMQKDTLDSFRSGKVNLLFTTDVAEEGIHVPECSCVIRFDLPRTTRS 508
Query: 508 YIQSRGRARQHNSQFILMLE--------------RSERSVTDTALSRDPEACFLKACTYV 553
Y+QSRGRARQ +SQ+ILM+E RSE S+ A SR+
Sbjct: 509 YVQSRGRARQEDSQYILMIERGNVKQNDLISAIVRSETSMVKIASSRESGNLSPGFVPNE 568
Query: 554 KTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSN 613
+ Y V +TGA VT DSS+++++RYCE LP DK Y+PKP F++ ++ Y C L LP +
Sbjct: 569 EINEYHVGTTGAKVTADSSISIVYRYCEKLPQDKCYSPKPTFEFTHHDDGYVCTLALPPS 628
Query: 614 APFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLP 673
A Q +VGP +RN + +KQLVCL+AC+KLH++GAL+DHL SVE+P I KN+
Sbjct: 629 AVLQILVGPKARNMHKAKQLVCLDACKKLHELGALDDHLCLSVEDPVPE--IVSKNKG-T 685
Query: 674 GAGTTKRKELHGTTPIRALSGRW-GEKCGVILHAYKFNFACSIVTEIYSGFVLLIESELD 732
G GTTKRKELHGTT I A SG W +K + L +YK NF C +IYS FVLLI++ L
Sbjct: 686 GIGTTKRKELHGTTRIHAWSGNWVSKKTALKLQSYKMNFVCDQAGQIYSEFVLLIDATLP 745
Query: 733 NDVGNFELELYLVSKTVKATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKLFVKSK-SS 791
++V E++LYL K VK +VSS G + LDA QM +AK FQ L FNGLFGKLF +SK +
Sbjct: 746 DEVATLEIDLYLHDKMVKTSVSSCGLLELDAQQMEQAKLFQGLLFNGLFGKLFTRSKVPN 805
Query: 792 GSREFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCASVVEFIK----- 846
REF L +E +W+ + +YLLLP N D + INWS I+ A+ V+ ++
Sbjct: 806 APREFILNKEDTFVWNTASVYLLLP---TNPSFDSNVCINWSVIDAAATAVKLMRRIYSE 862
Query: 847 -EKSFLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSVDAKNLKDMVVLAIHTGR 905
++ LG + N G D+IHLAN S A +LKDMVVLA+HTG+
Sbjct: 863 NKRELLGIFDSDQNVG-----------------DLIHLANKSCKANSLKDMVVLAVHTGK 905
Query: 906 IYSIVEIVNNSSAESPFDGNTDDDS---KTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPH 962
IY+ ++I S +S FDG +D +TF YF +KYGIVL HP QPLL LK SHNPH
Sbjct: 906 IYTALDIT-ELSGDSAFDGASDKKECKFRTFAEYFKKKYGIVLRHPSQPLLVLKPSHNPH 964
Query: 963 NLLVN-FNDGGGSGKGSKSGMN-TKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQR 1020
NLL + F D G + +G K VHMPPELL+ +D+P+ +++S YL P++M R
Sbjct: 965 NLLSSKFRDEGNVVENMSNGTPVVNKTSNRVHMPPELLIPLDLPVEILRSFYLFPALMYR 1024
Query: 1021 LESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSC 1080
+ESL LASQLR EI N I S LILEA+TTL C E FSMERLELLGDSVLKYAVSC
Sbjct: 1025 IESLTLASQLRSEIGYSDSN--ISSFLILEAITTLRCSEDFSMERLELLGDSVLKYAVSC 1082
Query: 1081 HLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRP 1140
HLFL +P K EGQLS+ R +CN+TL+KLG +R +QGY+RD+AFDPRRW+APGQLS+RP
Sbjct: 1083 HLFLKFPNKDEGQLSSIRCHMICNATLYKLGIERNVQGYVRDAAFDPRRWLAPGQLSIRP 1142
Query: 1141 VPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGL 1200
PCEC V + EV D D +V+GK CD GHRWM SKTIADC EA+IGAYY GGGL
Sbjct: 1143 SPCECPVKS-EVVTDDIHIIDDKAIVLGKACDKGHRWMCSKTIADCVEAIIGAYYAGGGL 1201
Query: 1201 IAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEA 1260
AA+ ++KWLGI A++E L+ I AS+++Y+P+ N + +E+K+GY F+VK LL EA
Sbjct: 1202 RAAMAVLKWLGIGAEIEEDLIVQAILSASVQTYLPKDNVFEMLEAKLGYSFSVKGLLVEA 1261
Query: 1261 ITHASVQEF---YCYQ-------------------------------------------- 1273
+TH S QE YCY+
Sbjct: 1262 LTHPSQQELGAKYCYERLEFLGDAVLDILLTRYLFNSHKDTNEGELTDLRSASVNNENFA 1321
Query: 1274 ------NLYKHLQHCSTLLLSQITEYVK-----SFPKPGETTDSGPSMKAPKALGDLLES 1322
N + LQH S LLL QITEYV S K +D P K PK LGD++ES
Sbjct: 1322 QVAVKHNFHHFLQHSSGLLLDQITEYVNRLEGSSMDKVELLSDGLP--KGPKVLGDIVES 1379
Query: 1323 IVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELCDSLGYFVKENCTLKG 1382
I GA+L+DTKL+LD VW IF+P+LSPIVTP+ LELPP RELIE C GYFV NC +G
Sbjct: 1380 IAGAILLDTKLDLDVVWGIFEPLLSPIVTPENLELPPYRELIEWCGKHGYFVGINCRDQG 1439
Query: 1383 EMVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEVCEKRISKGASNTGKLGDD 1442
+ V A L +QLK+VLLV +G + RK AK A+S LLK LE I K AS T +
Sbjct: 1440 DTVVATLDVQLKEVLLVRQGFSKKRKDAKAHASSLLLKDLEEKGLIIPKNASKTEQFEKH 1499
Query: 1443 CRQTT--------KEDLPEPPSCKRQKGTEAAIPAGDSCKKAYCMTVGTPVVAPINMKKG 1494
C T D P K + A DS + +G P+ + KG
Sbjct: 1500 CGSTNPFNNLHVDAMDTQTPKPTKEKN-------AADS-RNISDPLLGKPLHVIVKTSKG 1551
Query: 1495 GPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCE----GLEKRTGFS-SFVSKITLHIP 1549
GPR +L++LCK + WPMPT E +E + C +K T + +F S ITLHIP
Sbjct: 1552 GPRIALYELCKKLQWPMPTME-SEKVQPSFSSVCSSPGGSSQKATPQAFAFASTITLHIP 1610
Query: 1550 EFGNVECNGDPRADKKSSFDSAALIMLHELERQGKI 1585
+ GD RADKKSS DSAAL +L+EL+R+G +
Sbjct: 1611 NADVISLTGDGRADKKSSQDSAALFLLYELQRRGTL 1646
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Probably involved in the RNA silencing pathway. May cleave double-stranded RNA to produce short 21-24 nucleotides (nt) RNAs which target the selective destruction of complementary RNAs. Oryza sativa subsp. japonica (taxid: 39947) EC: 3EC: .EC: 1EC: .EC: 2EC: 6EC: .EC: - |
| >sp|Q9LXW7|DCL3_ARATH Endoribonuclease Dicer homolog 3 OS=Arabidopsis thaliana GN=DCL3 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 1481 bits (3834), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 816/1653 (49%), Positives = 1054/1653 (63%), Gaps = 162/1653 (9%)
Query: 6 NSLKRSFGEVHSPNPPDMGSSGHDHAVDGPSSSTNSINFIPRIYQLKVFEVAKRRNTIAV 65
NSLKR F E+ D SS +G Y+LKV+EVAK RN IAV
Sbjct: 17 NSLKRKFSEIDGDQNLDSVSSPMMTDSNGS-------------YELKVYEVAKNRNIIAV 63
Query: 66 LETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYY 125
L TG K+ I LIK + S+ K+LIIFLAPTV+LV QQ IR + +VEEY+
Sbjct: 64 LGTGIDKSEITKRLIKAMGS---SDTDKRLIIFLAPTVNLVKQQCCEIRALVNLKVEEYF 120
Query: 126 GAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHP 185
GAKGVD+W SQ W +E +K+DVLVMTPQILLD LR AFL L++VC ++IDECHH TGNHP
Sbjct: 121 GAKGVDKWTSQRWDEEFSKHDVLVMTPQILLDVLRSAFLKLEMVCLLIIDECHHTTGNHP 180
Query: 186 YTKIMKEFYHKSDNKPKVFGMTASPVVRKG-VSSAMDCEGQISELESTLDSQVFTIEDKT 244
Y K+MKEFYH+S +KPK+FG+TAS V+RKG VSS + Q+SELE +DS++F E++
Sbjct: 181 YAKLMKEFYHESTSKPKIFGLTASAVIRKGIVSSPSNYAAQVSELERLMDSKIFNPEERE 240
Query: 245 EMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHK 304
+E F + KE Y+ S C +LK KLE S KFDASL +LQ + + +MD+K +
Sbjct: 241 GVEKFATTVKEGPILYNPSPSCSLELKEKLETSHLKFDASLRRLQELGKDSFLNMDNKFE 300
Query: 305 TLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEV 364
T +K+LS + +IL+CLD LGLICA+ A ++CLEK+ +EE E Y++ S+ CK FLE++
Sbjct: 301 TYQKRLSIDYREILHCLDNLGLICAHLAAEVCLEKISDTKEESETYKECSMVCKEFLEDI 360
Query: 365 LHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERI 424
L IG LP DK +D ++ AV G++S KL EL L SF Q C+I VERI
Sbjct: 361 LSTIGVYLPQDDKSLVDLQQNHLSAVISGHVSPKLKELFHLLDSFRGDKQKQCLILVERI 420
Query: 425 IAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVI 484
I AKV+ERFVKK L +L V YLT + S + K+Q E+ + F+ GKVNLLF TDV+
Sbjct: 421 ITAKVIERFVKKEASLAYLNVLYLTENNPSTNVSAQKMQIEIPDLFQHGKVNLLFITDVV 480
Query: 485 EEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERSERSVTD--------T 536
EEG VP+CS ++ FDLPKT+ SY QS+ A+Q NS+ I+ LER D
Sbjct: 481 EEGFQVPDCSCMVCFDLPKTMCSYSQSQKHAKQSNSKSIMFLERGNPKQRDHLHDLMRRE 540
Query: 537 ALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFK 596
L +DPEA LK+C + V+ G+ V DS++ +
Sbjct: 541 VLIQDPEAPNLKSCPPPVKNGHGVKEIGSMVIPDSNITV--------------------- 579
Query: 597 YKSAEEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSV 656
+EEA A QT+ P SRN+ L C+KL L+++LL S
Sbjct: 580 ---SEEA----------ASTQTMSDPPSRNEQLP-------PCKKLR----LDNNLLQS- 614
Query: 657 EEPSENNLISKKNESLPGAGTTKRKELHGTTPIRALSGRWGEKC-GVILHAYKFNFACSI 715
E SK S AG+ KRKELHGTT ALSG WGE G AYKF+F C+I
Sbjct: 615 -NGKEKVASSKSKSSSSAAGSKKRKELHGTTCANALSGTWGENIDGATFQAYKFDFCCNI 673
Query: 716 VTEIYSGFVLLIESELDNDVGNFELELYLVSKTVKATVSSSGQVHLDADQMSKAKCFQEL 775
E+YS F LL+ES L DVG E++LYLV K VKA+VS GQ+ L +++ KAK FQ+
Sbjct: 674 SGEVYSSFSLLLESTLAEDVGKVEMDLYLVRKLVKASVSPCGQIRLSQEELVKAKYFQQF 733
Query: 776 FFNGLFGKLFVKSKSSGS-REFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSG 834
FFNG+FGKLFV SKS G+ REF L+ +T+SLW P++M+LLLP+E N S I+WS
Sbjct: 734 FFNGMFGKLFVGSKSQGTKREFLLQTDTSSLWHPAFMFLLLPVE-TNDLA-SSATIDWSA 791
Query: 835 INPCASVVEFIKEKSFLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSVDAKNLK 894
IN CAS+VEF+K+ S L + N N+S + ++IH AN S D +L+
Sbjct: 792 INSCASIVEFLKKNSLLDLRDSDGNQCNTSSGQEVLLDDKMEETNLIHFANASSDKNSLE 851
Query: 895 DMVVLAIHTGRIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLR 954
++VV+AIHTGRIYSIVE V++SSA SPF+ + T+ YF++KYGIVL HP QPL++
Sbjct: 852 ELVVIAIHTGRIYSIVEAVSDSSAMSPFEVDASSGYATYAEYFNKKYGIVLAHPNQPLMK 911
Query: 955 LKQSHNPHNLLVNFNDGGGSGKGSKSG-MNTKKPQMHVHMPPELLVRVDVPISVVKSLYL 1013
LKQSH+ HNLLV+FN+ K+G + +KP +H H+PPELL R+DVP +V+KS+YL
Sbjct: 912 LKQSHHAHNLLVDFNEEMVVKTEPKAGNVRKRKPNIHAHLPPELLARIDVPRAVLKSIYL 971
Query: 1014 LPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSV 1073
LPSVM RLESLMLASQLREEI+C NF I S+ ILEA+TTL C ESFSMERLELLGDSV
Sbjct: 972 LPSVMHRLESLMLASQLREEIDCSIDNFSISSTSILEAVTTLTCPESFSMERLELLGDSV 1031
Query: 1074 LKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAP 1133
LKY SCHLFL YP K EGQLS +R + NS LH+L T RKLQGYIR+ AF+PRRW AP
Sbjct: 1032 LKYVASCHLFLKYPDKDEGQLSRQRQSIISNSNLHRLTTSRKLQGYIRNGAFEPRRWTAP 1091
Query: 1134 GQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGA 1193
GQ SL PVPC+CG+DT EVPLD KFFT++ + +GK CDMGHRW+ SK+++DCAEALIGA
Sbjct: 1092 GQFSLFPVPCKCGIDTREVPLDPKFFTENMTIKIGKSCDMGHRWVVSKSVSDCAEALIGA 1151
Query: 1194 YYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTV 1253
YYV GGL A+L+MMKWLGID D + +LV + I R SLR Y+P+ +E+ ++E KI +EF+
Sbjct: 1152 YYVSGGLSASLHMMKWLGIDVDFDPNLVVEAINRVSLRCYIPKEDELIELERKIQHEFSA 1211
Query: 1254 KFLLQEAITHASVQEFYCYQ---------------------------------------- 1273
KFLL+EAITH+S++E Y Y+
Sbjct: 1212 KFLLKEAITHSSLRESYSYERLEFLGDSVLDFLITRHLFNTYEQTGPGEMTDLRSACVNN 1271
Query: 1274 ----------NLYKHLQHCSTLLLSQITEYVKSFPKPGETTDSGPSMKAPKALGDLLESI 1323
NL+ HLQ C+T+L +QI +Y+ SF KP ET S PS++ PKALGD++ESI
Sbjct: 1272 ENFAQVAVKNNLHTHLQRCATVLETQINDYLMSFQKPDETGRSIPSIQGPKALGDVVESI 1331
Query: 1324 VGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELCDSLGYFVKENCTLKGE 1383
GA+LIDT+L+LD+VWR+F+P+LSP+VTPDKL+LPP REL ELCDSLGYF + C+ G
Sbjct: 1332 AGALLIDTRLDLDQVWRVFEPLLSPLVTPDKLQLPPYRELNELCDSLGYFFRVKCSNDGV 1391
Query: 1384 MVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEVCEKRISKGASNTGKLGDD- 1442
A ++LQL DVLL G+G E++ K A GKAAS LL +LE ++ IS+ S LGD+
Sbjct: 1392 KAQATIQLQLDDVLLTGDGSEQTNKLALGKAASHLLTQLE--KRNISRKTS----LGDNQ 1445
Query: 1443 --------CRQTTKEDLPEPPSCKRQKGTEAAIPAGDSCKKAYCMTVGTPVVAPINMKKG 1494
C + +E L + + ++ P + PINMKKG
Sbjct: 1446 SSMDVNLACNHSDRETL--------------------TSETTEIQSIVIPFIGPINMKKG 1485
Query: 1495 GPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNV 1554
GPR +L + CK LWPMPTF+T+E KSRT F +G EKRT FSSF S ITL IP V
Sbjct: 1486 GPRGTLHEFCKKHLWPMPTFDTSEEKSRTPFEFIDGGEKRTSFSSFTSTITLRIPNREAV 1545
Query: 1555 ECNGDPRADKKSSFDSAALIMLHELERQGKIII 1587
G+ R DKKSSFDSA + +L+ELER+ +II
Sbjct: 1546 MYAGEARPDKKSSFDSAVVELLYELERRKIVII 1578
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Ribonuclease (RNase) III involved in RNA-mediated post-transcriptional gene silencing (PTGS). Involved in the processing of repeat-associated small interfering RNAs (ra-siRNAs, derived from heterochromatin and DNA repeats such as transposons) by cleaving small dsRNAs into 24 nucleotide ra-siRNAs. Plays a role in antiviral RNA silencing. Involved in the production of viral siRNAs derived from the cabbage leaf curl virus (CaLCuV) and tobacco rattle virus (TRV). Targeted by the viral silencing suppressor (VSR) protein 2b of the cucumber mosaic virus (CMV) that inactivates DCL3 function in RNA silencing. Acts redundantly with DICER-LIKE 1 (DCL1) to promote flowering via repression of FLOWERING LOCUS C (FLC). Does not seem to be involved in microRNAs (miRNAs) processing. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 1 EC: . EC: 2 EC: 6 EC: . EC: - |
| >sp|Q7XD96|DCL3B_ORYSJ Endoribonuclease Dicer homolog 3b OS=Oryza sativa subsp. japonica GN=DCL3B PE=2 SV=2 | Back alignment and function description |
|---|
Score = 1398 bits (3618), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 769/1631 (47%), Positives = 1037/1631 (63%), Gaps = 114/1631 (6%)
Query: 35 PSSSTNSINFIPRIYQL-KVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSN-GF 92
P S + + PR QL +VFE A R NTIAVL+TG+GKTM+AVML ++ A+ +++
Sbjct: 27 PRGSRPTADTTPRTSQLVEVFEAALRGNTIAVLDTGSGKTMVAVMLAREHARRVRAGEAP 86
Query: 93 KKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTP 152
+++++FLAPTVHLVHQQ++VIR +TD +V GA V EW + W++E+ +N+++VMTP
Sbjct: 87 RRIVVFLAPTVHLVHQQFEVIREYTDLDVMMCSGASRVGEWGADHWKEEVGRNEIVVMTP 146
Query: 153 QILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVV 212
QILLDALR AFL++ V ++ DECH A G+HPY +IMKEFY S +P VFGMTASPV
Sbjct: 147 QILLDALRHAFLTMSAVSLLIFDECHRACGSHPYARIMKEFYFGSQWRPDVFGMTASPVA 206
Query: 213 RKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKG 272
KG S+ +CE IS+LE TLD++++ +ED+ E+E F P ++YD +LK
Sbjct: 207 TKGASTLHNCEAHISQLELTLDAKIYIVEDRNELESFSPPTTIVNKYYDAYMVDFDNLKS 266
Query: 273 KLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEA 332
KL++ +FD+ L LQ S N +KD D+ +T RK LS YH KILY L++LG I E
Sbjct: 267 KLQIFSDEFDSLLVGLQESPSNKFKDTDNILETSRKSLSRYHGKILYSLNDLGPIITSEV 326
Query: 333 VKICLEKV--LKAQEECEIYRQSSL--QCKYFLEEVLHVIGSALPLADKIFLDFGFDYSK 388
VKI +E V L E+C I+ ++SL YF +E L +I LP + +
Sbjct: 327 VKIHIESVKPLCDSEDC-IFSKASLCLHMSYF-KEALSLIEEILPQGYGELMKSESGSEE 384
Query: 389 AVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYL 448
GYIS+K++ L+ +F SFG S +VLC+IFV+RII AK VERF++ + + +++YL
Sbjct: 385 LTKRGYISSKVNTLINIFKSFGSSNEVLCLIFVDRIITAKAVERFMRGIVNFSCFSISYL 444
Query: 449 TGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSY 508
TG +TS DAL+P VQ+ L+ FR GKVNLLF TDV EEG+ VPNCS VIRFDLP+TV SY
Sbjct: 445 TGGSTSKDALSPAVQRFTLDLFRAGKVNLLFTTDVTEEGVDVPNCSCVIRFDLPRTVCSY 504
Query: 509 IQSRGRARQHNSQFILMLERSERSVTDTALSRDPEACFLKACTYVK-------------T 555
+QSRGRAR++NS+FILM+ER + ++K C +
Sbjct: 505 VQSRGRARRNNSEFILMIERGNLQQQEHIFRMIQTGYYVKNCALYRHPNALSYDLSIQGM 564
Query: 556 KSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAP 615
+Y V+STGA++T D VNLI +YCE LP D+Y+ PKP F+ + ++C LTLP NA
Sbjct: 565 YTYQVQSTGATITADCCVNLIRKYCEKLPKDRYFMPKPSFEVTIEDGLFKCTLTLPRNAA 624
Query: 616 FQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLPGA 675
FQ+IVGP S + NLSKQLV LEAC+KLHQ+G LNDHL+P EEP + + + + + G
Sbjct: 625 FQSIVGPLSSSSNLSKQLVSLEACKKLHQLGELNDHLVPLTEEPMDTDFTTADEKCISGP 684
Query: 676 GTTKRKELHGTTPIRALSGRW-GEKCGVILHAYKFNFACSIVTEIYSGFVLLIESELDND 734
GTTKRKELHGTT + ALSG W + + L+ Y+ +F C E Y+GFVLL+E ELD+D
Sbjct: 685 GTTKRKELHGTTCVLALSGTWIHDSENITLNTYRIDFLCDQEGENYAGFVLLMEPELDDD 744
Query: 735 VGNFELELYLV-SKTVKATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKLFVKSKSSGS 793
V +++L+L+ +K V TV+ G+V L+ Q+ K K FQE FFNG+FG+LF S+ SG+
Sbjct: 745 VAPSKMDLFLIPNKMVYTTVTPRGKVQLNKKQLGKGKLFQEFFFNGIFGRLFHGSRKSGA 804
Query: 794 -REFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCASVVEFIKEKSFLG 852
R+F K+ W+ MYLLLPL + D I+W I CA VE + S+ G
Sbjct: 805 QRDFIFKKGHEIQWNTESMYLLLPLRDSSYIQD-DLSIHWEAIESCAGAVEQLW-SSYQG 862
Query: 853 AAQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSVDAKNLKDMVVLAIHTGRIYSIVEI 912
N P P K +++IHLAN S+ ++KD VVL++HTGRIY+++++
Sbjct: 863 DE-------NVIPVNCIPQKRRGGQEEIIHLANKSLHCSSIKDSVVLSLHTGRIYTVLDL 915
Query: 913 VNNSSAESPFDGNTDDDSK---TFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLL---V 966
+ +++AE FD + +FV+Y+ +KYGI++ HP QPLL LKQSHN HNLL +
Sbjct: 916 ILDTTAEDSFDEMCKGKASPFTSFVDYYHQKYGIIIQHPEQPLLLLKQSHNAHNLLFSKL 975
Query: 967 NFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLML 1026
+ DG +GK + +K Q+H +PPELL+ +DV ++KS YLLPSV+ RL+SLML
Sbjct: 976 KYLDGS-TGKP----LLMEKEQIHARVPPELLIHLDVTTDILKSFYLLPSVIHRLQSLML 1030
Query: 1027 ASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTY 1086
ASQLR EI N HIP +LILEA+TTL CCE+FS+ERLELLGDSVLKY V C LFL Y
Sbjct: 1031 ASQLRREIG---YNQHIPVTLILEAITTLRCCETFSLERLELLGDSVLKYVVGCDLFLRY 1087
Query: 1087 PKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECG 1146
P KHEGQLS RS AVCN+TLHK G R LQGY+RD+AFDPRRWVAPGQ+SLRP PC CG
Sbjct: 1088 PMKHEGQLSDMRSKAVCNATLHKHGIWRSLQGYVRDNAFDPRRWVAPGQISLRPFPCNCG 1147
Query: 1147 VDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYM 1206
++T VP ++ D VGKPCD GHRWM SKTI+DC EAL+GAYYVGGG+ AAL++
Sbjct: 1148 IETAFVPSHRRYIRDDPSFFVGKPCDRGHRWMCSKTISDCVEALVGAYYVGGGIAAALWV 1207
Query: 1207 MKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASV 1266
M+W GID ++ L+ + AS + +IN+I+++E+K+ Y F+VK LL EAITH S+
Sbjct: 1208 MRWFGIDIKCDMKLLQEVKFNASHLCSLSKINDIEELEAKLKYNFSVKGLLLEAITHPSL 1267
Query: 1267 QEF---YCYQ-------------------------------------------------- 1273
QE YCYQ
Sbjct: 1268 QELGVDYCYQRLEFLGDSVLDLLLTRHLYATHTDVDPGELTDLRSALVSNENFAQAVVRN 1327
Query: 1274 NLYKHLQHCSTLLLSQITEYVKS-FPKPGETTD--SGPSMKAPKALGDLLESIVGAVLID 1330
N++ HLQH S +LL QITEYV+S G+ ++ + K PK LGD++ESI GAV ID
Sbjct: 1328 NIHSHLQHGSGILLEQITEYVRSNLECQGKESEFLQHTTCKVPKVLGDIMESIAGAVFID 1387
Query: 1331 TKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELCDSLGYFVKENCTLKGEMVHAELR 1390
T N+D VW IF+P+LSP++TPDKL LPP REL+ELC +G F+ CT KGE V E+
Sbjct: 1388 TDFNVDMVWEIFEPLLSPLITPDKLALPPYRELLELCSHIGCFLNSKCTSKGEEVIIEMS 1447
Query: 1391 LQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEVCEKRISKGASNTGKLGDDCRQTTKED 1450
LQL+D LLV +G +R++K AK KAAS++L L+ I + S +L D + D
Sbjct: 1448 LQLRDELLVAQGHDRNKKRAKAKAASRILADLKQQGLSIKQCLSKAKQL-DIVTSDLQFD 1506
Query: 1451 LPEPPSCKRQKGTEAAIP-AGDSCKKAYCMTVGTPVVAPINMKKGGPRTSLFQLCKTMLW 1509
L GT+ + D +V VV P+ M+KGGPR++LF+LCK + W
Sbjct: 1507 LT-------SSGTQLSYSDLNDYHILEGLSSVKKEVVLPLKMEKGGPRSALFKLCKILQW 1559
Query: 1510 PMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFD 1569
PMP FE E + RT +V +G T F+SFVS ITLHIP+ + G+ R DKKS+ D
Sbjct: 1560 PMPEFEFVEQRFRTPIVM-DG-ATTTNFNSFVSTITLHIPDATTITFQGERRTDKKSAQD 1617
Query: 1570 SAALIMLHELE 1580
SA+L+MLH+L+
Sbjct: 1618 SASLMMLHKLQ 1628
|
Probably involved in the RNA silencing pathway. May cleave double-stranded RNA to produce short 21-24 nucleotides (nt) RNAs which target the selective destruction of complementary RNAs. Oryza sativa subsp. japonica (taxid: 39947) EC: 3 EC: . EC: 1 EC: . EC: 2 EC: 6 EC: . EC: - |
| >sp|Q8LMR2|DCL1_ORYSJ Endoribonuclease Dicer homolog 1 OS=Oryza sativa subsp. japonica GN=DCL1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 627 bits (1616), Expect = e-178, Method: Compositional matrix adjust.
Identities = 511/1743 (29%), Positives = 778/1743 (44%), Gaps = 346/1743 (19%)
Query: 47 RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
R YQL+V E AK RNTIA LETGAGKT+IAV+LIK + + K L +FL P V LV
Sbjct: 268 RQYQLEVLEQAKSRNTIAFLETGAGKTLIAVLLIKSVCDKMLKENKKMLAVFLVPKVPLV 327
Query: 107 HQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSL 166
+Q VLVMT QILL+ LR + + +
Sbjct: 328 YQ--------------------------------------VLVMTAQILLNILRHSIIKM 349
Query: 167 DIVCFIVIDECHHATGNHPYTKIMKEFYHKS--DNKPKVFGMTASPVVRKGVSSAMDCEG 224
D + +++DECHHA HPY+ +M EFYH + + +P VFGMTASPV KGV+S DC
Sbjct: 350 DAIHLLILDECHHAVKKHPYSLVMSEFYHTTPKEKRPAVFGMTASPVNLKGVTSQEDCAI 409
Query: 225 QISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGS--DLKGKLEVSWSKFD 282
+I LES LDS V TI+D+ E+E VP E YD++ S + ++E + +
Sbjct: 410 KIRNLESKLDSVVCTIKDRKELEKHVPMPLEVVVQYDKAATLWSLHEQIKQMESTVEEAA 469
Query: 283 ASLSKLQGSQLNCYKDMDDK------HKTLRKQLSDYHAKIL-------YCLDELGLICA 329
S SK Q +D + + + SD A ++ Y L ELG CA
Sbjct: 470 LSSSKRTKWQFMGARDAGSRDELRLVYGVSERTESDGAANLIQKLRAINYALGELGQWCA 529
Query: 330 YEAVK---ICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVI------GSALP------- 373
Y+ + L+ +A + ++ Q S +L++V+ ++ G+A+
Sbjct: 530 YKVAQSFLTALQNDERANYQVDVKFQES-----YLKKVVDLLHCQLTEGAAMKSETSDVE 584
Query: 374 ----------------LADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLC 417
L D AV G ++ ++ L+++ L + +
Sbjct: 585 MQNTEKHNTNDLEEGELPDSHGEHVDEVIGAAVADGKVTPRVQALIKILLKYQHTEDFRA 644
Query: 418 IIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNL 477
IIFVER++ A V+ + + ++P L+ + A L G + + ++Q + + FR G+V L
Sbjct: 645 IIFVERVVTALVLPKVLAELPSLSFIRCASLIGHNNNQEMRACQMQ-DTISKFRDGRVTL 703
Query: 478 LFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLER--------- 528
L AT V EEG+ + C+ VIRFDL KTV +YIQSRGRAR+ S +ILMLER
Sbjct: 704 LVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMLERGNISHETFL 763
Query: 529 -----SERSVTDTALSRDPEA-----CFLKACTYVKTKSYIVESTGASVTTDSSVNLIHR 578
SE ++ A+ R + L Y VESTGA V+ +S+V LIH
Sbjct: 764 RNARNSEETLRKEAMERTDLSHLDGTSVLSPVDTSPGSMYQVESTGAVVSLNSAVGLIHF 823
Query: 579 YCEMLPSDKYYTPKPIFKYKSAEEA-----YECELTLPSNAPFQTIVGPTSRNKNLSKQL 633
YC LPSD+Y P F + E+ Y C+L LP NAPF+ + GP + L++Q
Sbjct: 824 YCSQLPSDRYSILHPEFIMQKYEKPGGSVEYSCKLQLPCNAPFEKLEGPICSSIRLAQQA 883
Query: 634 VCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLPGAGTTKRKELH--GTTPIRA 691
VCL AC+KLH++GA D LLP E + +E P GT + +E + G I
Sbjct: 884 VCLAACKKLHEMGAFTDTLLPD-RGSGEGEKTEQNDEGEPLPGTARHREFYPEGVADILR 942
Query: 692 ----LSGRWGEKCGVILHAYKFNFAC--------SIVTEIYSGFVLLIESELDNDVGNFE 739
LSGR G + + Y ++ C VT++ S F ++ +ELD +V +
Sbjct: 943 GEWILSGRDGYQNSQFIKLYMYSVNCVNVGTSKDPFVTQL-SNFAIIFGNELDAEVLSTT 1001
Query: 740 LELYLVSKTV-KATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKLFVKSKSSGSREFFL 798
++L++ + KA++ G++ + Q+ K F + + L V S
Sbjct: 1002 MDLFVARTMITKASLVFRGRIEITESQLVLLKSFHVRLMSIV---LDVDVDPS------- 1051
Query: 799 KRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCASV------VEFIKEKSFLG 852
+ W P+ YL +P+ D I+W+ +N + ++ + +LG
Sbjct: 1052 ----TTPWDPAKAYLFVPVG-AEKCTDPLREIDWTLVNNIVNTDAWNNPLQRARPDVYLG 1106
Query: 853 AAQCNNNGGNSS--------------------------------------PCRTSPCKTG 874
+ G P R +
Sbjct: 1107 TNERTLGGDRREYGFGKLRHGTAFGQKAHPTYGIRGAIAEFDIVKASGLVPARDRGHFSD 1166
Query: 875 CHGKDVIHLANGSVDAKNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGNTDD----DS 930
+ + +A+ +AK+L MVV A H+G+ + + I N +AE+ F +
Sbjct: 1167 YQNQGKLFMADSCWNAKDLAGMVVTAAHSGKRFYVDCICYNMNAENSFPRKEGYLGPLEY 1226
Query: 931 KTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMH 990
++ +Y+ +KYG+ LI+ QPL+R + NLL + + +G S K +
Sbjct: 1227 SSYADYYKQKYGVELIYRKQPLIRARGVSYCKNLLSPRFEHSDAREGDFSENLDKT--YY 1284
Query: 991 VHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILE 1050
V++PPEL + +P S+V+ LPS+M+R+ES++LA QL++ I+ + +P++ ILE
Sbjct: 1285 VYLPPELCLVHPLPGSLVRGAQRLPSIMRRVESMLLAVQLKDIID-----YPVPATKILE 1339
Query: 1051 ALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKL 1110
ALT C E+ ER ELLGD+ LK+ VS LFL YP+KHEGQL+ R V N L++
Sbjct: 1340 ALTAASCQETLCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQY 1399
Query: 1111 GTDRKLQGYIRDSAFDPRRWVAPGQLSL---------------RPVPCECGVDTLEVPLD 1155
++ LQ YI+ F P RW APG L + CE ++ + D
Sbjct: 1400 ALNKTLQSYIQADRFAPSRWAAPGVLPVFDEESREYEPSIFDEESTGCELQKESYDDYAD 1459
Query: 1156 GKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDAD 1215
+D ++ C +R + SKT+AD EALIG YYV GG IAA ++MKW+GI A+
Sbjct: 1460 N--MQEDGEIEGDSSC---YRVLSSKTLADVVEALIGVYYVAGGKIAANHLMKWIGIHAE 1514
Query: 1216 LEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQE--FYCYQ 1273
L+ + S + IN ++ +G EF K LL EAITHAS CYQ
Sbjct: 1515 LDPEEIPPPKPYDIPESIMRSIN-FDTLKGVLGIEFQNKGLLVEAITHASRPSSGVSCYQ 1573
Query: 1274 N--------------------------------------------------LYKHLQHCS 1283
L+ HL+H S
Sbjct: 1574 RLEFVGDAVLDHLITRHLFFTYTDLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGS 1633
Query: 1284 TLLLSQITEYVKSFP----KPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVW 1339
+ L +QI E+VK KPG + KAPK LGD++ESI GA+ +D+ + VW
Sbjct: 1634 SALETQIREFVKDVQEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGYDTSVVW 1693
Query: 1340 RIFKPILSPIVTPDKLELPPLRELIELCDSLGYFVKENCTLKGEMVHAELRLQLKDVLLV 1399
++F+P+L P+VTP+ L + P+REL E C ++ + G + E+ D + +
Sbjct: 1694 KVFQPLLHPMVTPETLPMHPVRELQERCQQQAEGLEYKASRAGNIATVEV---FVDGVQI 1750
Query: 1400 GEGQERSRKAAKGKAASQLLKKLEVCEKRISKGASNTGKLGDDCRQTTKEDLPEPPSCKR 1459
G Q +K A+ AA L L+ E K G+ + + T++
Sbjct: 1751 GVAQNPQKKMAQKLAARNALVVLKEKETATKKEDERDGEKKNGAQMFTRQ---------- 1800
Query: 1460 QKGTEAAIPAGDSCKKAYCMTVGTPVVAPINMKKGGPRTSLFQLCKTMLWPMPTFETTES 1519
+L +C WPMP +
Sbjct: 1801 ---------------------------------------TLNDICLRRQWPMPQYR---- 1817
Query: 1520 KSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFG-NVECNGDPRADKKSSFDSAALIMLHE 1578
C FV + ++ + G EC G+P K + DSAA+++L
Sbjct: 1818 --------CVNEGGPAHAKRFVYSVRVNTSDRGWTDECIGEPMPSVKKAKDSAAVLLLEL 1869
Query: 1579 LER 1581
L R
Sbjct: 1870 LNR 1872
|
Involved in the RNA silencing pathway. Cleaves double-stranded RNA to produce microRNAs (miRNAs) of 21-24 nucleotides which target the selective destruction of complementary RNAs. Regulates by this way the development of the plant. May not be involved in small interfering RNAs (siRNAs) production. Oryza sativa subsp. japonica (taxid: 39947) EC: 3 EC: . EC: 1 EC: . EC: 2 EC: 6 EC: . EC: - |
| >sp|P84634|DCL4_ARATH Dicer-like protein 4 OS=Arabidopsis thaliana GN=DCL4 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 603 bits (1556), Expect = e-171, Method: Compositional matrix adjust.
Identities = 488/1678 (29%), Positives = 770/1678 (45%), Gaps = 276/1678 (16%)
Query: 45 IPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVH 104
I R YQ+++ + A N I L TG GKT IAVMLI ++ + S K + IFLAPTV
Sbjct: 123 IARRYQVELCKKATEENVIVYLGTGCGKTHIAVMLIYELGHLVLSPK-KSVCIFLAPTVA 181
Query: 105 LVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL 164
LV QQ VI +F+V + G K + + S+ W++EI N+VLVMTPQILL L+ F+
Sbjct: 182 LVEQQAKVIADSVNFKVAIHCGGKRIVKSHSE-WEREIAANEVLVMTPQILLHNLQHCFI 240
Query: 165 SLDIVCFIVIDECHHAT--GNHPYTKIMKEFYH-KSDNKPKVFGMTASPVVRKGVSSAMD 221
++ + ++ DECHHA NHPY +IMK FY +S +P++FGMTASPVV KG + +
Sbjct: 241 KMECISLLIFDECHHAQQQSNHPYAEIMKVFYKSESLQRPRIFGMTASPVVGKGSFQSEN 300
Query: 222 CEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKF 281
I+ LE+ L+++V+++E +++ FV S +Y + S S ++
Sbjct: 301 LSKSINSLENLLNAKVYSVESNVQLDGFVSSPLVKVYYYRSALSDASQ-------STIRY 353
Query: 282 DASLSKLQGSQLNCYKDMDDKHKT-----LRKQLSDYHAKILYCLDELGLICAYEAVKIC 336
+ L ++ L K + D H+T +++ L H ++Y L LGL A +A KI
Sbjct: 354 ENMLEDIKQRCLASLKLLIDTHQTQTLLSMKRLLKRSHDNLIYTLLNLGLWGAIQAAKIQ 413
Query: 337 LEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALP----LADKIFLDFGFDYSKAVDL 392
L Q+E S C +L + S + +D + L A+
Sbjct: 414 LNSDHNVQDEPVGKNPKSKICDTYLSMAAEALSSGVAKDENASDLLSL-------AALKE 466
Query: 393 GYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGST 452
S KL +L+++ F + CIIFV RI+ A+ + + + L +L G +
Sbjct: 467 PLFSRKLVQLIKILSVFRLEPHMKCIIFVNRIVTARTLSCILNNLELLRSWKSDFLVGLS 526
Query: 453 TSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSR 512
+ + +++ + + +L+ F+ ++NLL AT V EEG+ + C VIR+DLP+TV+S+IQSR
Sbjct: 527 SGLKSMSRRSMETILKRFQSKELNLLVATKVGEEGLDIQTCCLVIRYDLPETVTSFIQSR 586
Query: 513 GRARQHNSQFILML----ERSERSVTDTALSRDPEACFL------KACTYVKTKSYIVES 562
GRAR S++ ++ E+ + + ++ D + + C + + Y V
Sbjct: 587 GRARMPQSEYAFLVDSGNEKEMDLIENFKVNEDRMNLEITYRSSEETCPRLDEELYKVHE 646
Query: 563 TGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEE--AYECELTLPSNAPFQTIV 620
TGA ++ SS++L+++YC LP D+++ PKP F++K +E C +TLP+NAP I
Sbjct: 647 TGACISGGSSISLLYKYCSRLPHDEFFQPKPEFQFKPVDEFGGTICRITLPANAPISEIE 706
Query: 621 GPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKK--NESLPGAGTT 678
+ +K+ CL+A +LH +G LND LLP ++ E+ L + +++ G G +
Sbjct: 707 SSLLPSTEAAKKDACLKAVHELHNLGVLNDFLLPDSKDEIEDELSDDEFDFDNIKGEGCS 766
Query: 679 KRKELHGTTPIRALSGRWGEKCGVI-LHAYKFNFACSIVTEIYSGFVLLIESELDNDVGN 737
+ P+ +W + LH+Y F IY F ++S L +
Sbjct: 767 RGDLYEMRVPV-LFKQKWDPSTSCVNLHSYYIMFVPHPADRIYKKFGFFMKSPLPVEAET 825
Query: 738 FELELYLV-SKTVKATVSSSGQVHLDADQMSKAKCFQELFFNGLF--GKL---FVKSKSS 791
+++L+L ++V + SG D D++ A+ FQE+ LF G+L FV
Sbjct: 826 MDIDLHLAHQRSVSVKIFPSGVTEFDNDEIRLAELFQEIALKVLFERGELIPDFVP---- 881
Query: 792 GSREFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCASVVEFIKEKSFL 851
L+ + +S S S YLLLPL + + G+ ++W I C
Sbjct: 882 ------LELQDSSRTSKSTFYLLLPLCLHD--GESVISVDWVTIRNCL------------ 921
Query: 852 GAAQCNNNGGNSSPCRTSPC--------KTGCHGKDVIHLANGSVDAKNLKDMVVLAIHT 903
SSP +P +G H K LANG + ++K+ +V ++
Sbjct: 922 -----------SSPIFKTPSVLVEDIFPPSGSHLK----LANGCWNIDDVKNSLVFTTYS 966
Query: 904 GRIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHN 963
+ Y + +I + + SP + +K+ V + YG+ L HP QPLLR+K + N
Sbjct: 967 KQFYFVADICHGRNGFSPV---KESSTKSHVESIYKLYGVELKHPAQPLLRVKPLCHVRN 1023
Query: 964 LLVNFNDGGGSGKGSKSGMNTK-KPQ----MHVHMPPEL--LVRVDVPISVVKSLYLLPS 1016
LL N M T +PQ + +PPEL L + + SL LLPS
Sbjct: 1024 LLHN-------------RMQTNLEPQELDEYFIEIPPELSHLKIKGLSKDIGSSLSLLPS 1070
Query: 1017 VMQRLESLMLASQLREEINCHSRNF-HIPSSLILEALTTLGCCESFSMERLELLGDSVLK 1075
+M R+E+L++A +L+ ++ + +LEALTT C E S+ERLE+LGD+ LK
Sbjct: 1071 IMHRMENLLVAIELKHVLSASIPEIAEVSGHRVLEALTTEKCHERLSLERLEVLGDAFLK 1130
Query: 1076 YAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQ 1135
+AVS HLFL + EG+L+ RRS V NS L +L + LQ YIRD A DP ++ A G
Sbjct: 1131 FAVSRHLFLHHDSLDEGELTRRRSNVVNNSNLCRLAIKKNLQVYIRDQALDPTQFFAFGH 1190
Query: 1136 LSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKP----CDMGHRWMGSKTIADCAEALI 1191
PC D + + +D ++ C GH W+ KTIAD EAL+
Sbjct: 1191 ------PCRVTCDEV-ASKEVHSLNRDLGILESNTGEIRCSKGHHWLYKKTIADVVEALV 1243
Query: 1192 GAYYVGGGLIAALYMMKWLGIDADLE-VSLVDDCITRASLRSYVPRI--NEIKDIESKIG 1248
GA+ V G A+ +KW+G++ D E + + D CI R Y+P N ++ +E+++
Sbjct: 1244 GAFLVDSGFKGAVKFLKWIGVNVDFESLQVQDACIAS---RRYLPLTTRNNLETLENQLD 1300
Query: 1249 YEFTVKFLLQEAITHASVQEF--YCYQNL------------------------------- 1275
Y+F K LL +A H S CYQ L
Sbjct: 1301 YKFLHKGLLVQAFIHPSYNRHGGGCYQRLEFLGDAVLDYLMTSYFFTVFPKLKPGQLTDL 1360
Query: 1276 ------------------YKHLQHCSTLLLSQITEYVKSF--PKPGETTDS-GPSMKAPK 1314
K C ++ L ++ E +F P + S GP + PK
Sbjct: 1361 RSLSVNNEALANVAVSFSLKRFLFCESIYLHEVIEDYTNFLASSPLASGQSEGP--RCPK 1418
Query: 1315 ALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELCDSLGYFV 1374
LGDL+ES +GA+ +D NL+ VW + L P+ L++ P++ELIELC S +
Sbjct: 1419 VLGDLVESCLGALFLDCGFNLNHVWTMMLSFLDPVKNLSNLQISPIKELIELCQSYKWDR 1478
Query: 1375 KENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEV---------C 1425
+ + T K EL++ L R+++ KAA ++ L+
Sbjct: 1479 EISATKKDGAFTVELKVTKNGCCLTVSATGRNKREGTKKAAQLMITNLKAHENITTSHPL 1538
Query: 1426 EKRISKGASNTGKL----------------------------GDDCRQTT---KEDLPEP 1454
E + G N KL G+ R ++ + LP+
Sbjct: 1539 EDVLKNGIRNEAKLIGYNEDPIDVVDLVGLDVENLNILETFGGNSERSSSYVIRRGLPQA 1598
Query: 1455 PSCKRQKGTEAAIPAGDSCKKAYCMTVGTPVVAPINMKKGGP-----RTSLFQLCKTMLW 1509
PS + + AI +K GGP ++ L + C W
Sbjct: 1599 PSKTEDRLPQKAI-----------------------IKAGGPSSKTAKSLLHETCVANCW 1635
Query: 1510 PMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGN--VECNGDPRADKK 1565
P FE E E SFV K+ L + + N +EC G+ RA KK
Sbjct: 1636 KPPHFECCEE------------EGPGHLKSFVYKVILEVEDAPNMTLECYGEARATKK 1681
|
Ribonuclease (RNase) III involved in RNA-mediated post-transcriptional gene silencing (PTGS). Functions in the biogenesis of trans-acting small interfering RNAs (ta-siRNAs, derived from the TAS1, TAS2 or TAS3 endogenous transcripts) by cleaving small dsRNAs into 21-24 nucleotide ta-siRNAs. Functions with the dsRNA-binding protein DRB4 in ta-siRNAs processing. Acts in the RDR6/SGS3/DCL4/AGO7 ta-siRNA pathway involved in leaf developmental timing. Plays a role in transitive silencing of transgenes by processing secondary siRNAs. This pathway, which requires DCL2 and RDR6, amplifies silencing by using the target RNA as substrate to generate secondary siRNAs, providing an efficient mechanism for long-distance silencing. Required for the production of the 30-40 nucleotide bacterial-induced long siRNAs (lsiRNA). May participate with DCL3 in the production of 24 nucleotide repeat-associated siRNAs (ra-siRNAs) which derive from heterochromatin and DNA repeats such as transposons. Plays an important role in antiviral RNA silencing. Involved in the production of viral siRNAs derived from the cucumber mosaic virus (CMV), turnip crinkle virus (TCV) and tobacco rattle virus (TRV). Targeted by the viral silencing suppressor (VSR) protein 2b of the cucumber mosaic virus (CMV) that inactivates DCL4 function in RNA silencing. Does not seem to be involved in microRNAs (miRNAs) processing. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 1 EC: . EC: 2 EC: 6 EC: . EC: - |
| >sp|A7LFZ6|DCL4_ORYSJ Endoribonuclease Dicer homolog 4 OS=Oryza sativa subsp. japonica GN=DCL4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 592 bits (1526), Expect = e-168, Method: Compositional matrix adjust.
Identities = 475/1512 (31%), Positives = 705/1512 (46%), Gaps = 198/1512 (13%)
Query: 34 GPSSSTN---SINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSN 90
GPSS+ I R YQL + + A N I L TG GKT IAV+LI ++ I+
Sbjct: 15 GPSSTRGEPKDPRTIARKYQLDLCKRAVEENIIVYLGTGCGKTHIAVLLIYELGHLIRKP 74
Query: 91 GFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVM 150
+++ IFLAPT+ LV QQ VI TDF+V+ YYG G + D Q W+ ++ + +VLVM
Sbjct: 75 S-REVCIFLAPTIPLVRQQAVVIASSTDFKVQCYYG-NGKNSRDHQEWENDMREFEVLVM 132
Query: 151 TPQILLDALRKAFLSLDIVCFIVIDECHHAT--GNHPYTKIMKEFYHKS--DNKPKVFGM 206
TPQILL +LR F+ ++ + +++DECHHA HPY +IMKEFY+ + + P+VFGM
Sbjct: 133 TPQILLQSLRHCFIKMNSIALLILDECHHAQPQKRHPYAQIMKEFYNSNSVEKFPRVFGM 192
Query: 207 TASPVVRKGV--------------------------SSAMDCEGQISELESTLDSQVFTI 240
TASP++ KGV S+ ++ I+ LE L ++V ++
Sbjct: 193 TASPIIGKGVMPSHSFTEKGGRSPCQPLIFFLPKGGSNKLNYTKCINSLEELLHAKVCSV 252
Query: 241 EDKTEMEVFVPSAKESCRFY------DQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLN 294
D E+E V S FY + + C +L S ASL
Sbjct: 253 -DNEELESVVASPDMEVYFYGPVNHSNLTTICIKELDSLKLQSERMLRASLC-------- 303
Query: 295 CYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSS 354
D D K L K L H I++CL ELG A +A + L + E+ S
Sbjct: 304 ---DFKDSQKKL-KSLWRLHENIIFCLQELGSFGALQAARTFLSFDGDKLDRREVDLNGS 359
Query: 355 LQCKYFLEEVLHVIGSALPLADKIFLDFG-FDYSKAVDLGYISTKLHELLQLFLSFGKST 413
F L+ S L G FD K ++ + S K L+ + +G
Sbjct: 360 TSS--FAHHYLNGATSILSRNKTDGSHAGSFDLEK-LEEPFFSNKFSVLINVLSRYGLQE 416
Query: 414 QVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGG 473
+ CI+FV+RI A+ + ++ + L +L G + ++ +++ F G
Sbjct: 417 NMKCIVFVKRITVARAISNILQNLKCLEFWKCEFLVGCHSGSKNMSRNKMDAIVQRFSSG 476
Query: 474 KVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERSERS- 532
+VNLL AT V EEG+ + C V+RFDLP+TV+S+IQSRGRAR S+++++LER +S
Sbjct: 477 EVNLLVATSVGEEGLDIQTCCLVVRFDLPETVASFIQSRGRARMTKSKYVVLLERENQSH 536
Query: 533 ----------------VTDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLI 576
D+ S D C ++ Y V++TGAS++T SV+L+
Sbjct: 537 EKLLNGYIAGESIMNEEIDSRTSNDMFDC-------LEENIYQVDNTGASISTACSVSLL 589
Query: 577 HRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCL 636
H YC+ LP D ++TP P+F Y E C L LP NA F+ G +K+ +K+ CL
Sbjct: 590 HCYCDNLPRDMFFTPSPVFFYIDGIEGIICRLILPPNAAFRQADGQPCLSKDEAKRDACL 649
Query: 637 EACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLPGA--GTTKRKELHGTTPIRALSG 694
+AC KLH++GAL D LLP S N +S N S + R+ELH I A+
Sbjct: 650 KACVKLHKLGALTDFLLPG--PGSRKNKVSVTNNSSNNKVEDDSLREELHEML-IPAVLK 706
Query: 695 RWGEKCGVI--LHAYKFNFACSIVTEIYSGFVLLIESELDNDVGNFELELYLV-SKTVKA 751
G K + LH Y F Y F L + + L + +++L+L + VKA
Sbjct: 707 PSGLKLDSLSNLHFYYVKFIPIPEDRRYQMFGLFVINPLPVEAETLQVDLHLARGRIVKA 766
Query: 752 TVSSSGQVHLDADQMSKAKCFQELFFNGLFGKLFVKSKSSGSREFFLKRETNSLWSPSYM 811
+ G++ + ++M A FQE+ K+ + S L + +L S
Sbjct: 767 GIKHLGKIAFEKEKMMLAHKFQEMCL-----KILLDRSEFTSPHVKLGNDV-TLEINSTF 820
Query: 812 YLLLPLEIVNTFGDGSWRINWSGINPCASVVEFIKEKSFLGAAQCNNNGGNSSPCRTSPC 871
YLLLP++ +GD + I+W + C SSP P
Sbjct: 821 YLLLPIK-QKCYGD-RFMIDWPAVERCL-----------------------SSPIFKDPI 855
Query: 872 KTGCHG----KDVIHLANGSVDAKNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGNTD 927
H + + L +G ++ VV + H + + I++ +A S G
Sbjct: 856 DVSVHASYSSNESLRLLDGIFSKTDVVGSVVFSPHNNIFFFVDGILDEINAWSEHSG--- 912
Query: 928 DDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKP 987
T+ +F E++ I L HP QPLL+ KQ N NLL N +G +
Sbjct: 913 ---ATYAEHFKERFRIELSHPEQPLLKAKQIFNLRNLLHNRLPETTESEGREL------L 963
Query: 988 QMHVHMPPEL--LVRVDVPISVVKSLYLLPSVMQRLESLMLASQLRE-EINCHSRNFHIP 1044
+ V +PPEL L + + SL LLPS+M RLE+L++A +L++ ++ I
Sbjct: 964 EHFVELPPELCSLKVIGFSKDMGSSLSLLPSLMYRLENLLVAIELKDVMLSSFPEASQIS 1023
Query: 1045 SSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCN 1104
+S ILEALTT C E S+ER E+LGD+ LKY V H F+TY EGQL+ RRS V N
Sbjct: 1024 ASGILEALTTEKCLERISLERFEVLGDAFLKYVVGRHKFITYEGLDEGQLTRRRSDVVNN 1083
Query: 1105 STLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTK 1164
S L++L +KLQ YIRD F+P ++ APG RP C D +EV L D +
Sbjct: 1084 SHLYELSIRKKLQVYIRDQQFEPTQFFAPG----RPCKVVCNTD-VEVRLHQMDIHPDNR 1138
Query: 1165 VVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDC 1224
C H W+ K IAD E+LIGA+ V GG AA + W+GID D +
Sbjct: 1139 ENCNLRCTRSHHWLHRKVIADVVESLIGAFLVEGGFKAAFAFLHWIGIDVDFNNPALYRV 1198
Query: 1225 ITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQEFY--CYQNL------- 1275
+ +S+ + +I +E IGY+F K LL +A H S + CYQ L
Sbjct: 1199 LDSSSINLSLMDYTDIAGLEELIGYKFKHKGLLLQAFVHPSFSQHSGGCYQRLEFLGDAV 1258
Query: 1276 -------------------------------------------YKHLQHCSTLLLSQITE 1292
+KHL S L S I++
Sbjct: 1259 LEYVITSYLYSTYPDIKPGQITDLRSLAVGNDSLAYAAVEKSIHKHLIKDSNHLTSAISK 1318
Query: 1293 YVKSFPKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTP 1352
+ D PKALGD++ES +GAVL+D+ NL+ VW++ +L P++T
Sbjct: 1319 FEMYVKLSNSEKDLLEEPACPKALGDIVESCIGAVLLDSGFNLNYVWKVMLMLLKPVLTF 1378
Query: 1353 DKLELPPLRELIELCDSLGYFVKENCTLKGE-MVHAELRLQLKDVLLVGEGQERSRKAAK 1411
+ P+REL ELC G+ + +K + H ++ + +K +++ R+ KAA+
Sbjct: 1379 ANMHTNPMRELRELCQCHGFELGLPKPMKADGEYHVKVEVNIKSKIIICTAANRNSKAAR 1438
Query: 1412 GKAASQLLKKLE 1423
AA + L KL+
Sbjct: 1439 KFAAQETLSKLK 1450
|
Involved in the RNA silencing pathway. Cleaves double-stranded RNA to produce small interfering RNAs (siRNAs) which target the selective destruction of complementary RNAs. Required for the production of 21 nucleotide siRNAs. Regulates shoot apical meristem (SAM) initiation and maintenance, leaf polarization and lemma polarity through the trans-acting siRNAS (ta-siRNAs) pathway, which probably modulate the expression of the ARF2, ARF3, ARF4, ARF14 and ARF15 genes. Can process endogenous 21 nucleotide siRNAs derived from an imperfect inverted repeat. May not be involved in microRNAs (miRNAs) production. Oryza sativa subsp. japonica (taxid: 39947) EC: 3 EC: . EC: 1 EC: . EC: 2 EC: 6 EC: . EC: - |
| >sp|Q3EBC8|DCL2_ARATH Endoribonuclease Dicer homolog 2 OS=Arabidopsis thaliana GN=At3g03300 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 567 bits (1460), Expect = e-160, Method: Compositional matrix adjust.
Identities = 445/1425 (31%), Positives = 682/1425 (47%), Gaps = 222/1425 (15%)
Query: 47 RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKK----LIIFLAPT 102
R YQ++ E A ++NTI LETG+GKT+IA+ML++ A F+K +FL P
Sbjct: 25 RSYQVEALEKAIKQNTIVFLETGSGKTLIAIMLLRSYAYL-----FRKPSPCFCVFLVPQ 79
Query: 103 VHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA 162
V LV QQ + +++HTD +V Y+G GVD WDS W++E++K +VLVMTP ILLDALR +
Sbjct: 80 VVLVTQQAEALKMHTDLKVGMYWGDMGVDFWDSSTWKQEVDKYEVLVMTPAILLDALRHS 139
Query: 163 FLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHK-----SDNKPKVFGMTASPVVRKGVS 217
FLSL ++ +++DECHHA G HPY IM+EFYHK + N P++FGMTAS V KG
Sbjct: 140 FLSLSMIKVLIVDECHHAGGKHPYACIMREFYHKELNSGTSNVPRIFGMTASLVKTKG-- 197
Query: 218 SAMDCE-GQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCG---SDLKGK 273
+D +I ELE+ ++S+V+T E+++ + FVP + S ++Y K + L K
Sbjct: 198 ENLDSYWKKIHELETLMNSKVYTCENESVLAGFVPFSTPSFKYYQHIKIPSPKRASLVEK 257
Query: 274 LEVSWSKFDASLSKLQGSQLNCYKDMDDKH-KTLRKQLSDYHAKILYCLDELGLICAYEA 332
LE K SL L D++ ++ K+L + + YCLD+LG++ A +A
Sbjct: 258 LERLTIKHRLSLGTL---------DLNSSTVDSVEKRLLRISSTLTYCLDDLGILLAQKA 308
Query: 333 VKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSAL-----PLADKIFLD---FGF 384
+ S+ Q FL L++ AL A + FL G
Sbjct: 309 AQ----------------SLSASQNDSFLWGELNMFSVALVKKFCSDASQEFLAEIPQGL 352
Query: 385 DYSKA-----VDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKV-P 438
++S A + G ++ K L++ L + + CIIFV+R+I A V+E + ++ P
Sbjct: 353 NWSVANINGNAEAGLLTLKTVCLIETLLGYSSLENIRCIIFVDRVITAIVLESLLAEILP 412
Query: 439 FLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIR 498
+ Y+ G+ + + T K Q E++E FR G VN++ AT ++EEG+ V +C+ VIR
Sbjct: 413 NCNNWKTKYVAGNNSGLQNQTRKKQNEIVEDFRRGLVNIIVATSILEEGLDVQSCNLVIR 472
Query: 499 FDLPKTVSSYIQSRGRARQHNSQFILMLERSERSVTDTAL-------SRDPEACF---LK 548
FD + S+IQSRGRAR NS +++M+E + +T + L R E L
Sbjct: 473 FDPASNICSFIQSRGRARMQNSDYLMMVESGDL-LTQSRLMKYLSGGKRMREESLDHSLV 531
Query: 549 ACTYVKTKS----YIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAY 604
C + S + VESTGA+VT SSV+LI+ YC LPSD+Y+ P P F + +
Sbjct: 532 PCPPLPDDSDEPLFRVESTGATVTLSSSVSLIYHYCSRLPSDEYFKPAPRFDVNKDQGS- 590
Query: 605 ECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNL 664
C L LP + P + + N + KQ VCL+AC +LH+VGAL+DHL+P +
Sbjct: 591 -CTLYLPKSCPVKEV--KAEANNKVLKQAVCLKACIQLHKVGALSDHLVPDMVVAET--- 644
Query: 665 ISKKNESLPGAGTTKRKELHGTTPIR---ALSGRWGEKCGVILHAYKFNFACSIVTEIYS 721
+S+K E + + + P L ++ + H Y + +
Sbjct: 645 VSQKLEKI---------QYNTEQPCYFPPELVSQFSAQPETTYHFYLIRMKPNSPRNFHL 695
Query: 722 GFVLL-IESELDNDVGNFELELYLVSKTVKATVSSSGQVHLDADQMSKAKCFQELFFNGL 780
VLL L++D+GN L T+ T+S G HL +++ + FQ F L
Sbjct: 696 NDVLLGTRVVLEDDIGNTSFRLEDHRGTIAVTLSYVGAFHLTQEEVLFCRRFQITLFRVL 755
Query: 781 FGKLFVKSKSSGSREFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCAS 840
V++ L+ + YLL+P +T + I+W I
Sbjct: 756 LDH-SVENLMEALNGLHLRDGV------ALDYLLVP----STHSHETSLIDWEVIRSVNL 804
Query: 841 VVEFIKEKSFLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSVDAKNLKDMVVLA 900
+ EK C+ NG + ++H +G +++ +V
Sbjct: 805 TSHEVLEKH----ENCSTNGASR----------------ILHTKDGLFCTCVVQNALVYT 844
Query: 901 IHTGRIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHN 960
H G +Y ++NN + S D +T++ Y+ E++GI L +PLL +
Sbjct: 845 PHNGYVYCTKGVLNNLNGNSLLTKRNSGD-QTYIEYYEERHGIQLNFVDEPLLNGRHIFT 903
Query: 961 PHNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISV--VKSLYLLPSVM 1018
H+ L +K + + V +PPEL + PISV + S +PSVM
Sbjct: 904 LHSYL----------HMAKKKKEKEHDREFVELPPELCHVILSPISVDMIYSYTFIPSVM 953
Query: 1019 QRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAV 1078
QR+ESL++A L++ I +IP+ +LEA+TT C + F +E LE LGDS LKYAV
Sbjct: 954 QRIESLLIAYNLKKSI----PKVNIPTIKVLEAITTKKCEDQFHLESLETLGDSFLKYAV 1009
Query: 1079 SCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSL 1138
LF HEG LS ++ + N L + G +KLQG+IRD F+P+ W+ PGQ
Sbjct: 1010 CQQLFQHCHTHHEGLLSTKKDGMISNVMLCQFGCQQKLQGFIRDECFEPKGWMVPGQ--- 1066
Query: 1139 RPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGG 1198
+ L + + V R + K++AD E+LIGAY G
Sbjct: 1067 ---------SSAAYSLVNDTLPESRNIYVA-----SRRNLKRKSVADVVESLIGAYLSEG 1112
Query: 1199 GLIAALYMMKWLGIDADLEVSLVD-DCITRASLRSYVPRINEIKDIESKIGYEFTVKFLL 1257
G +AAL M W+GI D + + D +A ++ + +ES + Y F K LL
Sbjct: 1113 GELAALMFMNWVGIKVDFTTTKIQRDSPIQAE------KLVNVGYMESLLNYSFEDKSLL 1166
Query: 1258 QEAITHASVQ-----------EFY------------------------------------ 1270
EA+TH S EF
Sbjct: 1167 VEALTHGSYMMPEIPRCYQRLEFLGDSVLDYLITKHLYDKYPCLSPGLLTDMRSASVNNE 1226
Query: 1271 CY------QNLYKHLQHCSTLLLSQITEYVKSFPKPGETTDSG--PSMKAPKALGDLLES 1322
CY NL+KH+ + S L I+ V F + + G + PK LGD++ES
Sbjct: 1227 CYALVAVKANLHKHILYASHHLHKHISRTVSEFEQSSLQSTFGWESDISFPKVLGDVIES 1286
Query: 1323 IVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELC 1367
+ GA+ +D+ N + V+ KP+L ++TP+ ++L P+REL ELC
Sbjct: 1287 LAGAIFVDSGYNKEVVFASIKPLLGCMITPETVKLHPVRELTELC 1331
|
Ribonuclease (RNase) III involved in RNA-mediated post-transcriptional gene silencing (PTGS). Involved in the processing of natural small interfering RNAs (nat-siRNAs, derived from cis-natural antisense transcripts) by cleaving small dsRNAs into 24 nucleotide nat-siRNAs. Plays an essential role in transitive silencing of transgenes by processing secondary siRNAs. This pathway, which requires DCL4 and RDR6, amplifies silencing by using the target RNA as substrate to generate secondary siRNAs, providing an efficient mechanism for long-distance silencing. May participate with DCL3 in the production of 24 nucleotide repeat-associated siRNAs (ra-siRNAs) which derive from heterochromatin and DNA repeats such as transposons. Plays a role in antiviral RNA silencing. Involved in the production of viral siRNAs derived from the turnip crinkle virus (TCV) and tobacco rattle virus (TRV). Targeted by the viral silencing suppressor (VSR) protein 2b of the cucumber mosaic virus (CMV) that inactivates DCL2 function in RNA silencing. Does not seem to be involved in microRNAs (miRNAs) processing. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 1 EC: . EC: 2 EC: 6 EC: . EC: - |
| >sp|Q10HL3|DCL2A_ORYSJ Endoribonuclease Dicer homolog 2a OS=Oryza sativa subsp. japonica GN=DCL2A PE=2 SV=1 | Back alignment and function description |
|---|
Score = 565 bits (1456), Expect = e-159, Method: Compositional matrix adjust.
Identities = 433/1433 (30%), Positives = 681/1433 (47%), Gaps = 222/1433 (15%)
Query: 45 IPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVH 104
+ R YQL+ E A R NT+A LETG+GKT+IAVML++ A ++ ++ +FL PTV
Sbjct: 33 MARWYQLEALERAVRGNTLAFLETGSGKTLIAVMLLRAYAHRVRRPDSRRFAVFLVPTVV 92
Query: 105 LVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL 164
LV QQ V+ HTD V+++ G GVD WD+ W+ ++ +VLVMTPQILLD LR +F
Sbjct: 93 LVGQQARVVEQHTDLVVKQFCGEMGVDFWDAATWRSQLEDGEVLVMTPQILLDNLRHSFF 152
Query: 165 SLDIVCFIVIDECHHATGNHPYTKIMKEFYH------KSDNKPKVFGMTASPVVRKGVSS 218
L + ++ DECHHA GN PY I KEFYH SD P++FGM+AS + K ++
Sbjct: 153 RLQDIALLIFDECHHARGNTPYACIFKEFYHPQLNSSASDPLPRIFGMSASLIYSKDLN- 211
Query: 219 AMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKL---- 274
+ QISE+E+ ++S+V+T++ ++ + ++P A +D S S+L +
Sbjct: 212 PHNYSKQISEIENLMNSKVYTVDSESALSEYIPFASTKIVDFDDSNI-SSELHANILSCL 270
Query: 275 -EVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAV 333
++ +A KL GS L + ++++S H +YCL LG+ A +A
Sbjct: 271 NRLNKKHIEALDRKLHGSSL----------ENAKQRISKLHHTFVYCLYNLGVWLAAKAA 320
Query: 334 KICLEKVLKAQEECEIYRQSSLQCKYFLEEVL--HVIGSALPLADKI------FLD---F 382
E + Y ++SL F E L +V G ++++ FL
Sbjct: 321 ------------EVQSYEENSLS---FWGETLDKNVEGFIRNYSEEVHRELSCFLKNGHI 365
Query: 383 GFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTH 442
G + G ++ K+H L++ L + + CI+FVER+I + V+E + + ++
Sbjct: 366 GEKFPADSQDGILTPKVHCLIRTLLQYRHMQDLRCIVFVERVITSIVLEHLLSSIHQMSG 425
Query: 443 LTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLP 502
V ++ GS + + + K E++ESFR GKV+++ AT ++EEG+ VP+C+ VIRFD
Sbjct: 426 WNVKHMAGSRPGLLSQSRKNHTEIVESFRKGKVHIIIATQILEEGLDVPSCNLVIRFDPS 485
Query: 503 KTVSSYIQSRGRARQHNSQFILMLER--------SERSVTDTALSRDPE------ACFLK 548
TV S+IQSRGRAR NS ++L++ R +E+ + + R+ +C
Sbjct: 486 ATVCSFIQSRGRARMENSDYLLLVGRGDVEAQTNAEKFLASGQIMREESLRLGSISCQPL 545
Query: 549 ACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECEL 608
T + Y VEST A VT +SSV LIH +C LPSD+Y+ P P F A C L
Sbjct: 546 ENTLCEDTYYRVESTRAIVTLNSSVPLIHFFCSKLPSDEYFNPLPRFDIDKASGT--CTL 603
Query: 609 TLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKK 668
LP ++P QT+ ++ K+ VCL+AC++LH +GAL D LLP ++ P +
Sbjct: 604 HLPKSSPVQTV--NVEGEGSILKETVCLKACQELHAIGALTDSLLPELDVPCDEE----- 656
Query: 669 NESLPGAGTTKRKELHGTTPIRALSG-RWGEKCGVILHAYKFNFACSIVTEIYSGFVLLI 727
P + E P + R + G I + YK + T + +L +
Sbjct: 657 ----PDIVVENKIEQPSYFPEEFVDNWRSFSRLG-IYYCYKISLEGCPKTASPTDILLAL 711
Query: 728 ESELDNDVGNFELELYLVSKTVKATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKLFVK 787
+ +L +D + +L T+ G +HL+ +Q+ A+ FQ + L G ++
Sbjct: 712 KCDLGSDFTSSSFKLPGGQDNASVTMKYVGIIHLNQEQVIIARRFQTTILSFLIGDDHLE 771
Query: 788 SKSSGSREFFLKRETNSLWSP-SYMYLLLPLEIVNTFGDGSWRINWSGINPCASVVEFIK 846
S+G + F + + P +YLLLPL S RI+W +
Sbjct: 772 V-SNGIKYF------HEMQVPIGVVYLLLPLV--------SGRIDWCSMK---------- 806
Query: 847 EKSFLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSVDAKNLKDMVVLAIHTGRI 906
F + N + + C + C D++ +G LK+ +V H
Sbjct: 807 ---FSSSPIYEANNKHMTHCHS------CKDIDLLQTKDGPFCRCILKNSIVCTPHNNIF 857
Query: 907 YSIVEIVNNSSAESPFDGNT-----DDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNP 961
Y I ++ D N+ D T+ +YF ++G+ L QPLL + +
Sbjct: 858 YVISGFLD-------LDANSCLPQHDGTVVTYKDYFKTRHGLTLTFENQPLL----AGSK 906
Query: 962 HNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISV--VKSLYLLPSVMQ 1019
H + NF S K + G + V +PPEL + P+S + +PS+M
Sbjct: 907 HVKVRNFLHNCYSKKEKEPG-----DRYSVELPPELCRIIMSPVSANNLHIFSYVPSIMF 961
Query: 1020 RLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVS 1079
R++ ++L+ +L+ ++ + F +P ILEALTT C E FS E LE LGDS LKY +
Sbjct: 962 RIQCMLLSVKLKVQLGPTVQQFDVPVLKILEALTTKKCQEEFSQESLETLGDSFLKYVTT 1021
Query: 1080 CHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLR 1139
HLF Y +HEG L+ + + N+ L +L L GYI F+PR W+
Sbjct: 1022 RHLFSEYRLQHEGILTKMKKNLISNAALCQLACSSNLVGYIHAEEFNPRDWI-------- 1073
Query: 1140 PVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDM-GHRWMG--SKTIADCAEALIGAYYV 1196
+PC +D E + K+ P M R M SK IAD EALIGAY
Sbjct: 1074 -IPC---LDYDE--------RDNKKISFLAPNGMYSQRKMSIKSKRIADSVEALIGAYLS 1121
Query: 1197 GGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFL 1256
G AA +MK LG++ + + + ++ ++ +E +GY+F L
Sbjct: 1122 TAGEKAAFLLMKSLGMNIEFHTEIPVERKISMKAEEFI----NVRSLEGMLGYKFNDSLL 1177
Query: 1257 LQEAITHASVQ------------------------EFY---------------------- 1270
L EA+TH S Q E+Y
Sbjct: 1178 LLEALTHGSYQTSGPTSCYQRLEFLGDAILDHLFTEYYYSKYPDCTPELLTDLRSASVNN 1237
Query: 1271 -CYQN------LYKHLQHCSTLLLSQITEYV----KSFPKPGETTDSGPSMKAPKALGDL 1319
CY + L KH+ H S+ L +++ Y+ +SF P ++G + PK LGD+
Sbjct: 1238 NCYAHAAVKSGLNKHILHSSSELHRKMSYYLEEFGQSFTGPSYGWEAGIGL--PKVLGDV 1295
Query: 1320 LESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELCDSLGY 1372
+ESI GA+ +D+K + + VWR K +L P+ TP+ +E P++ L E CD +
Sbjct: 1296 IESIAGAIYLDSKCDKEVVWRSMKRLLEPLATPETIEPDPVKGLQEFCDRRSF 1348
|
Probably involved in the RNA silencing pathway. May cleave double-stranded RNA to produce short 21-24 nucleotides (nt) RNAs which target the selective destruction of complementary RNAs. Oryza sativa subsp. japonica (taxid: 39947) EC: 3 EC: . EC: 1 EC: . EC: 2 EC: 6 EC: . EC: - |
| >sp|Q69LX2|DCL2B_ORYSJ Endoribonuclease Dicer homolog 2b OS=Oryza sativa subsp. japonica GN=DCL2B PE=2 SV=2 | Back alignment and function description |
|---|
Score = 529 bits (1363), Expect = e-149, Method: Compositional matrix adjust.
Identities = 413/1408 (29%), Positives = 663/1408 (47%), Gaps = 212/1408 (15%)
Query: 45 IPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVH 104
+ R YQL+ E A R NT+A LETG+GKT+IAVML++ A ++ ++ +FL PTV
Sbjct: 33 MARWYQLEALERAVRGNTLAFLETGSGKTLIAVMLLRAYAHRVRRPDSRRFAVFLVPTVV 92
Query: 105 LVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL 164
LV QQ V+ HTD V+++ G GVD WD+ W+ ++ +VLVMTPQILLD LR +F
Sbjct: 93 LVGQQARVVEQHTDLVVKQFCGEMGVDFWDAATWRSQLEDGEVLVMTPQILLDNLRHSFF 152
Query: 165 SLDIVCFIVIDECHHATGNHPYTKIMKEFYH------KSDNKPKVFGMTASPVVRKGVSS 218
L + ++ DECHHA GN PY I KEFYH SD P++FGM+AS + K ++
Sbjct: 153 RLQDIALLIFDECHHARGNTPYACIFKEFYHPQLNSSASDPLPRIFGMSASLIYSKDLNQ 212
Query: 219 AMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKL---- 274
+ QISE+E+ ++S+V+T++ ++ + ++P A +D S S+L +
Sbjct: 213 H-NYSKQISEIENLMNSKVYTVDSESALSEYIPFASTKIVHFDDSNI-SSELHANILSCL 270
Query: 275 -EVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAV 333
++ +A KL GS L + ++++S H +YCL LG+ A +A
Sbjct: 271 NRLTKKHIEALDRKLHGSSL----------ENAKQRISKLHRTFVYCLYNLGVWLAAKAA 320
Query: 334 KICLEKVLKAQEECEIYRQSSLQCKYFLEEVL--HVIGSALPLADKI------FLD---F 382
E + Y ++SL F E L +V G ++++ FL
Sbjct: 321 ------------EVQSYEENSLS---FWGETLDKNVEGFIRNYSEEVHRELSCFLKNGHI 365
Query: 383 GFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTH 442
G + G ++ K+H L++ L + + CI+FV+R+I + V+E + + ++
Sbjct: 366 GEKFPADSQDGILTPKVHCLIRTLLQYRHMQDLRCIVFVQRVITSIVLEPLLSSIHQMSG 425
Query: 443 LTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLP 502
V ++ GS + + + K E++ESFR GKV+++ AT ++EEG+ VP+C+ VIRFD
Sbjct: 426 WNVKHMAGSRPGLLSQSRKNHTEIVESFRKGKVHIIIATQILEEGLDVPSCNLVIRFDPS 485
Query: 503 KTVSSYIQSRGRARQHNSQFILMLERSERSVTDTALSRDPEACFLKACTYVKTKSYIVES 562
TV S+IQSRGRAR NS ++L++ R + A FL + ++ +S + S
Sbjct: 486 ATVCSFIQSRGRARMENSDYLLLVGRGDVEAHTNAKK------FLASGQIMREESLRLGS 539
Query: 563 TGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQTIVGP 622
S L + CE D YY + + + + C L LP ++P QT+
Sbjct: 540 I-------SCQPLENTLCE----DTYYRVESTPAFDIDKASGTCTLHLPKSSPVQTV--N 586
Query: 623 TSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLPGAGTTKRKE 682
++ K+ VCL+AC++LH +GAL D LLP ++ P + P + E
Sbjct: 587 VEGEGSILKETVCLKACQELHAIGALTDSLLPELDVPCDEE---------PDIVVENKIE 637
Query: 683 LHGTTPIRALSG-RWGEKCGVILHAYKFNFACSIVTEIYSGFVLLIESELDNDVGNFELE 741
P + R + G I + YK + T + +L ++ +L +D + +
Sbjct: 638 QPSYFPEEFVDNWRSFSRLG-IYYCYKISLEGCPKTASPTDILLALKCDLGSDFTSSSFK 696
Query: 742 LYLVSKTVKATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKLFVKSKSSGSREFFLKRE 801
L T+ G +HL+ +Q+ A+ FQ + L G ++ S+G + F
Sbjct: 697 LPGGQDNASVTMKYVGIIHLNQEQVIIARRFQTTILSFLIGDDHLEV-SNGIKYF----- 750
Query: 802 TNSLWSP-SYMYLLLPLEIVNTFGDGSWRINWSGINPCASVVEFIKEKSFLGAAQCNNNG 860
+ + P +YLLLPL S RI+W + F + N
Sbjct: 751 -HEMQVPIGVVYLLLPLV--------SGRIDWCSMK-------------FSSSPIYEANN 788
Query: 861 GNSSPCRTSPCKTGCHGKDVIHLANGSVDAKNLKDMVVLAIHTGRIYSIVEIVN-NSSAE 919
+ + C + C D++ +G LK+ +V H Y I ++ ++++
Sbjct: 789 KHMTHCHS------CRDIDLLQTKDGPFCRCILKNSIVCTPHNNIFYVISGFLDLDANSR 842
Query: 920 SPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVNFNDGGGSGKGSK 979
P D T+ +YF ++G+ L QPLL + N L N+ G +
Sbjct: 843 LP---QHDGTVVTYKDYFKTRHGLTLTFENQPLLAGSKHVKVRNFLHNYYYKKEKEPGDR 899
Query: 980 SGMNTKKPQMHVHMPPELLVRVDVPISV--VKSLYLLPSVMQRLESLMLASQLREEINCH 1037
V +PPEL + P+S + +PS+M R++ ++L+ +L+ ++
Sbjct: 900 YS---------VELPPELCRIIMSPVSANNLHIFSYVPSIMFRIQCMLLSVKLKVQLGPT 950
Query: 1038 SRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSAR 1097
+ F +P ILEALTT C E FS E LE LGDS LKY + HLF Y +HEG L+
Sbjct: 951 VQQFDVPVLKILEALTTKKCQEEFSQESLETLGDSFLKYVTTRHLFSEYRLQHEGILTKM 1010
Query: 1098 RSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGK 1157
+ + N+ L +L L GYI F+PR W+ +PC L+ G
Sbjct: 1011 KKNLISNAALCQLACSSNLVGYIHAEEFNPRDWI---------IPC------LDYDERG- 1054
Query: 1158 FFTQDTKVVVGKPCDM-GHRWMG--SKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDA 1214
+ K+ P M R M SK IAD EALIGAY G AA +MK LG++
Sbjct: 1055 ----NKKISFLAPNGMYSQRKMSIKSKRIADSVEALIGAYLSTAGEKAAFLLMKSLGMNI 1110
Query: 1215 DLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQ------- 1267
+ + + ++ +++ +E +GY+F LL EA+TH S Q
Sbjct: 1111 EFHTEIPVERKISMKAEEFI----DVRSLEGMLGYKFNDSLLLLEALTHGSYQTSGPTSC 1166
Query: 1268 -----------------EFY-----------------------CYQN------LYKHLQH 1281
E+Y CY + L KH+ H
Sbjct: 1167 YQRLEFLGDAILDHLFTEYYYSKYPDCTPELLTDLRSASVNNNCYAHAAVKSGLNKHILH 1226
Query: 1282 CSTLLLSQITEYV-KSFPKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWR 1340
S+ L +++ Y+ +SF P ++G + PK LGD++ESI GA+ +D+K + + VWR
Sbjct: 1227 SSSELHRKMSYYLGQSFTGPSYGWEAGIGL--PKVLGDVIESIAGAIYLDSKCDKEVVWR 1284
Query: 1341 IFKPILSPIVTPDKLELPPLRELIELCD 1368
K +L P+ TP+ +E P++ L E CD
Sbjct: 1285 SMKRLLEPLATPETIEPDPVKGLQEFCD 1312
|
Probably involved in the RNA silencing pathway. May cleave double-stranded RNA to produce short 21-24 nucleotides (nt) RNAs which target the selective destruction of complementary RNAs. Oryza sativa subsp. japonica (taxid: 39947) EC: 3 EC: . EC: 1 EC: . EC: 2 EC: 6 EC: . EC: - |
| >sp|Q9SP32|DCL1_ARATH Endoribonuclease Dicer homolog 1 OS=Arabidopsis thaliana GN=DCL1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 427 bits (1099), Expect = e-118, Method: Compositional matrix adjust.
Identities = 293/874 (33%), Positives = 437/874 (50%), Gaps = 107/874 (12%)
Query: 47 RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
R YQL V E AK +NTIA LETGAGKT+IA++LIK + + + S K L +FL P V LV
Sbjct: 250 RRYQLDVLEQAKAKNTIAFLETGAGKTLIAILLIKSVHKDLMSQNRKMLSVFLVPKVPLV 309
Query: 107 HQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSL 166
+QQ +VIR T F+V Y G G D WDS+ WQ+E VLVMT QILL+ LR + + +
Sbjct: 310 YQQAEVIRNQTCFQVGHYCGEMGQDFWDSRRWQREFESKQVLVMTAQILLNILRHSIIRM 369
Query: 167 DIVCFIVIDECHHATGNHPYTKIMKEFYHKS--DNKPKVFGMTASPVVRKGVSSAMDCEG 224
+ + +++DECHHA HPY+ +M EFYH + D +P +FGMTASPV KGVSS +DC
Sbjct: 370 ETIDLLILDECHHAVKKHPYSLVMSEFYHTTPKDKRPAIFGMTASPVNLKGVSSQVDCAI 429
Query: 225 QISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDAS 284
+I LE+ LDS V TI+D+ E+E VP E YD++ S + ++ + +A+
Sbjct: 430 KIRNLETKLDSTVCTIKDRKELEKHVPMPSEIVVEYDKAATMWSLHETIKQMIAAVEEAA 489
Query: 285 LSKLQGSQLNCYKDMDDKHKTLRKQL--------SDYHAKIL-------YCLDELGLICA 329
+ + S+ D K +Q+ SD A ++ Y L ELG CA
Sbjct: 490 QASSRKSKWQFMGARDAGAKDELRQVYGVSERTESDGAANLIHKLRAINYTLAELGQWCA 549
Query: 330 YEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSAL----------------- 372
Y+ + L L++ E Q Y L EV+ ++ L
Sbjct: 550 YKVGQSFL-SALQSDERVNFQVDVKFQESY-LSEVVSLLQCELLEGAAAEKVAAEVGKPE 607
Query: 373 -----------PLADKIFLDFGFDYSK----AVDLGYISTKLHELLQLFLSFGKSTQVLC 417
L D + G + AV G ++ K+ L++L L + +
Sbjct: 608 NGNAHDEMEEGELPDDPVVSGGEHVDEVIGAAVADGKVTPKVQSLIKLLLKYQHTADFRA 667
Query: 418 IIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNL 477
I+FVER++AA V+ + ++P L+ + A + G S + + ++Q + + FR G V L
Sbjct: 668 IVFVERVVAALVLPKVFAELPSLSFIRCASMIGHNNSQEMKSSQMQ-DTISKFRDGHVTL 726
Query: 478 LFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERS-------- 529
L AT V EEG+ + C+ V+RFDL KTV +YIQSRGRAR+ S +ILM+ER
Sbjct: 727 LVATSVAEEGLDIRQCNVVMRFDLAKTVLAYIQSRGRARKPGSDYILMVERGNVSHAAFL 786
Query: 530 -----------ERSVTDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHR 578
+ ++ T LS + L + V Y VE+TGA V+ +S+V L+H
Sbjct: 787 RNARNSEETLRKEAIERTDLSHLKDTSRLISIDAVPGTVYKVEATGAMVSLNSAVGLVHF 846
Query: 579 YCEMLPSDKYYTPKPIFKYKSAEE-----AYECELTLPSNAPFQTIVGPTSRNKNLSKQL 633
YC LP D+Y +P F + E+ Y C L LP NAPF+ + GP + L++Q
Sbjct: 847 YCSQLPGDRYAILRPEFSMEKHEKPGGHTEYSCRLQLPCNAPFEILEGPVCSSMRLAQQA 906
Query: 634 VCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLPGAGTTKRKELHGTTPIRALS 693
VCL AC+KLH++GA D LLP + + +E P GT + +E + L
Sbjct: 907 VCLAACKKLHEMGAFTDMLLPDKGSGQDAEKADQDDEGEPVPGTARHREFYPEGVADVLK 966
Query: 694 GRW----GEKC--GVILHAYKFNFAC--------SIVTEIYSGFVLLIESELDNDVGNFE 739
G W E C + H Y +N C ++E+ S F +L +ELD +V +
Sbjct: 967 GEWVSSGKEVCESSKLFHLYMYNVRCVDFGSSKDPFLSEV-SEFAILFGNELDAEVLSMS 1025
Query: 740 LELYLVSKTV-KATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKLFVKSKSSGSREFFL 798
++LY+ + KA+++ G + + +Q+S K F + + L V + S
Sbjct: 1026 MDLYVARAMITKASLAFKGSLDITENQLSSLKKFHVRLMSIV---LDVDVEPS------- 1075
Query: 799 KRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINW 832
+ W P+ YL +P+ NT + INW
Sbjct: 1076 ----TTPWDPAKAYLFVPV-TDNTSMEPIKGINW 1104
|
Ribonuclease (RNase) III involved in RNA-mediated post-transcriptional gene silencing (PTGS). Functions in the microRNAs (miRNAs) biogenesis pathway by cleaving primary miRNAs (pri-miRNAs) and precursor miRNAs (pre-miRNAs). Functions with DRB1/HYL1 and SERRATE proteins for accurate pri-miRNAs to miRNAs processing. Indirectly involved in the production of trans-acting small interfering RNAs (ta-siRNAs) derived from the TAS1, TAS2 or TAS3 endogenous transcripts by participating in the production of their initiating miRNAs. Involved in the processing of natural siRNAs (nat-siRNAs, derived from cis-natural antisense transcripts) by cleaving 24 nucleotide nat-siRNAs into 21 nucleotide nat-siRNAs. Can produce RDR6-dependent endogenous ta-siRNAs derived from TAS1 and TAS2. Required for the production of 30-40 nucleotide bacterial-induced long siRNAs (lsiRNA). Acts redundantly with DICER-LIKE 3 (DCL3) to promote flowering via repression of FLOWERING LOCUS C (FLC). Represses antiviral RNA silencing through negative regulation of the expression of DCL4 and DCL3. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 1 EC: . EC: 2 EC: 6 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1590 | ||||||
| 296081735 | 1688 | unnamed protein product [Vitis vinifera] | 0.996 | 0.938 | 0.641 | 0.0 | |
| 359475987 | 1648 | PREDICTED: endoribonuclease Dicer homolo | 0.988 | 0.953 | 0.645 | 0.0 | |
| 330370549 | 1655 | ribonuclease III family protein DCL3 [Go | 0.972 | 0.934 | 0.627 | 0.0 | |
| 449489290 | 1639 | PREDICTED: LOW QUALITY PROTEIN: endoribo | 0.961 | 0.932 | 0.616 | 0.0 | |
| 255550219 | 1660 | Ribonuclease III, putative [Ricinus comm | 0.979 | 0.938 | 0.595 | 0.0 | |
| 356509849 | 1671 | PREDICTED: endoribonuclease Dicer homolo | 0.980 | 0.932 | 0.587 | 0.0 | |
| 224141703 | 1492 | dicer-like protein [Populus trichocarpa] | 0.892 | 0.951 | 0.599 | 0.0 | |
| 357465903 | 1758 | Endoribonuclease Dicer-like protein [Med | 0.980 | 0.886 | 0.546 | 0.0 | |
| 115441737 | 1651 | Os01g0909200 [Oryza sativa Japonica Grou | 0.946 | 0.911 | 0.493 | 0.0 | |
| 334185717 | 1580 | protein dicer-like 3 [Arabidopsis thalia | 0.937 | 0.943 | 0.493 | 0.0 |
| >gi|296081735|emb|CBI20740.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2087 bits (5406), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1083/1689 (64%), Positives = 1266/1689 (74%), Gaps = 105/1689 (6%)
Query: 1 MHSP--LNSLKRSFGEVHSPNPPDMGSSGHDHAVDGPSSSTNSINFIPRIYQLKVFEVAK 58
MHSP N LKRSF E++ D + PSSS++S PR YQ KVFEVAK
Sbjct: 1 MHSPELANPLKRSFDEMNLKRDAD--DDSNPPPSPLPSSSSSSKELSPRSYQWKVFEVAK 58
Query: 59 RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQ--------QY 110
RRNTIAVL+TG GKTMIA+MLI++I QA+K++G K IIFLAPTVHLV+Q Q+
Sbjct: 59 RRNTIAVLDTGTGKTMIALMLIREIGQAVKADGRKLFIIFLAPTVHLVNQACFFFIFSQF 118
Query: 111 DVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVC 170
VI+ T FEVEEYYGAKGVDEW ++ W+KEI+++DVLVMTPQILLDALRKAFLSL+ VC
Sbjct: 119 KVIKDSTGFEVEEYYGAKGVDEWSAKSWEKEISEHDVLVMTPQILLDALRKAFLSLETVC 178
Query: 171 FIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELE 230
+++DECH ATGNHPYTKIMKEFYHKS +KPK+FGMTASPV+RKGVSS+MDCE QISELE
Sbjct: 179 LMIVDECHRATGNHPYTKIMKEFYHKSVDKPKIFGMTASPVIRKGVSSSMDCENQISELE 238
Query: 231 STLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQG 290
S LD Q++TIED+TE+EVF+PSAKE RFYD S+F DLK KL+ SWSKFD L LQG
Sbjct: 239 SILDCQIYTIEDRTELEVFIPSAKEINRFYDASQFHNLDLKAKLKSSWSKFDNLLLNLQG 298
Query: 291 SQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIY 350
S + YKDMDDK K LRK+LS+ HAKILYCLD+LGLICAYEAVK+C+E V AQEE E Y
Sbjct: 299 SPMTQYKDMDDKLKALRKRLSNDHAKILYCLDDLGLICAYEAVKVCIENVSNAQEEFEFY 358
Query: 351 RQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFG 410
RQSS QCK FL+EVL +IG LP D +L+ D KAVD GYI+ KLHELLQLF SFG
Sbjct: 359 RQSSSQCKCFLQEVLGIIGGYLPHGDGNYLNSESDILKAVDKGYITPKLHELLQLFQSFG 418
Query: 411 KSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESF 470
+ +VLC+IFVERII AKV+ERF+KK+ +L+H TV+YLTGS +SVDAL PK Q+E LESF
Sbjct: 419 VARKVLCLIFVERIITAKVIERFIKKIIYLSHFTVSYLTGSNSSVDALAPKAQRETLESF 478
Query: 471 RGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLE--- 527
R GKVNLLFATDV+EEG+HVPNCS VIRFDLPKTV SY+QSRGRARQ +SQFI+MLE
Sbjct: 479 RSGKVNLLFATDVVEEGIHVPNCSCVIRFDLPKTVRSYVQSRGRARQSDSQFIIMLERGN 538
Query: 528 -----------RSERSVTDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLI 576
RSE S+TDTA +RDP+ LKA T + SY V+STGASVT DSSV+LI
Sbjct: 539 TEQRDQLFDIIRSEYSMTDTATNRDPDGYTLKAYTIEEMDSYFVDSTGASVTADSSVSLI 598
Query: 577 HRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCL 636
HRYCE LP DKY+TPKP F + E YEC+LTLP NA FQTI+GP ++N +LSKQLVCL
Sbjct: 599 HRYCEKLPGDKYFTPKPFFHFTYLEGMYECKLTLPPNAAFQTIIGPGNKNSHLSKQLVCL 658
Query: 637 EACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLPGAGTTKRKELHGTTPIRALSGRW 696
EAC+KLHQ+GAL+DHLLP VEEPSEN++I K S GAGTTKRKELHGTT ALSG W
Sbjct: 659 EACKKLHQMGALDDHLLPYVEEPSENDIIVKSKGSAAGAGTTKRKELHGTTQTCALSGTW 718
Query: 697 GEKC-GVILHAYKFNFACSIVTEIYSGFVLLIESELDNDVGNFELELYLVSKTVKATVSS 755
G+K G I AYK +F+C+IV E+YSGFVLLIES+LD+DVGN E+ELYL+SK V+ +VSS
Sbjct: 719 GDKIDGAIFQAYKIDFSCNIVNELYSGFVLLIESKLDDDVGNIEMELYLISKFVRTSVSS 778
Query: 756 SGQVHLDADQMSKAKCFQELFFNGLFGKLFVKSKSSG-SREFFLKRETNSLWSPSYMYLL 814
GQV LDA+Q+ KA F ELFFN LFG+LF+ SKSSG REF L + SLWS S MYLL
Sbjct: 779 CGQVSLDAEQVMKAMRFHELFFNSLFGRLFIGSKSSGVRREFLLNTQQKSLWSSSNMYLL 838
Query: 815 LPLEIVNTFGDGSWRINWSGINPCASVVEFIKEKSFLGAAQCNNNGGNSSPCRTSPCKTG 874
LP+E N D SWRINW GIN CASVVEF++++S L N++ GN SPC T +T
Sbjct: 839 LPIESSNIPSDESWRINWPGINSCASVVEFLEKRSQLSTGNMNDDTGNPSPCSTGLVETE 898
Query: 875 CHGKDVIHLANGSVDAKNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGNTDDDSK--- 931
C +HLAN SV NLK+MVVLAIHTGRIYSI+++V ++SAESPFDG+ D +S
Sbjct: 899 CKSISTVHLANNSVHVNNLKNMVVLAIHTGRIYSILDVVIDTSAESPFDGSADVNSSNYT 958
Query: 932 TFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMHV 991
TF YF+ KYGIVL++PGQPLL LKQSHN HNLLVNFND GG + M +K Q HV
Sbjct: 959 TFAEYFNNKYGIVLMYPGQPLLLLKQSHNAHNLLVNFNDEGGEALQTGQKMLNEKAQTHV 1018
Query: 992 HMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEA 1051
HMPPELLV ++VPI+V+KS YLLPS++ RLESLMLASQLREEI + I SSLILEA
Sbjct: 1019 HMPPELLVSIEVPITVLKSSYLLPSLIHRLESLMLASQLREEI-AFTTGSQISSSLILEA 1077
Query: 1052 LTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLG 1111
+TTL C ESFSMERLELLGDSVLKYAVSCHLFL YPKKHEGQLSARRSW VCNSTLHKLG
Sbjct: 1078 ITTLRCSESFSMERLELLGDSVLKYAVSCHLFLKYPKKHEGQLSARRSWVVCNSTLHKLG 1137
Query: 1112 TDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPC 1171
TDR LQGYIRD AFDPRRWVAPGQ S+RPVPC CGVD LEVPLDGKF T+DTK+VVGK C
Sbjct: 1138 TDRSLQGYIRDGAFDPRRWVAPGQRSIRPVPCSCGVDALEVPLDGKFQTEDTKIVVGKSC 1197
Query: 1172 DMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLR 1231
D GHRWMGSKTIADC EALIGAYYVGGGL AAL++MKW GID +LE SLVD+ I ASLR
Sbjct: 1198 DRGHRWMGSKTIADCVEALIGAYYVGGGLNAALHLMKWFGIDVELEPSLVDEAIATASLR 1257
Query: 1232 SYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQEF---YCYQ--------------- 1273
+Y+P+ NEI+ +ESKIGYEF+VK LL EAITHA+ QE YCYQ
Sbjct: 1258 TYIPKANEIEILESKIGYEFSVKGLLLEAITHATEQELGVGYCYQRLEFLGDSVLDVLIT 1317
Query: 1274 -----------------------------------NLYKHLQHCSTLLLSQITEYVKSFP 1298
NL +HLQHCS LLL QI EY K
Sbjct: 1318 WHLYQSHRDIDPGELTDLRSASVNNESFAQVAVRRNLQQHLQHCSGLLLGQIKEYAKYLS 1377
Query: 1299 KPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP 1358
+ + S K PKALGDL+ESI GA+LIDTKLNL+EVWRIFKP+LSPIVTPDKLELP
Sbjct: 1378 GSDDVPNPLQSTKGPKALGDLVESIAGAILIDTKLNLNEVWRIFKPLLSPIVTPDKLELP 1437
Query: 1359 PLRELIELCDSLGYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQL 1418
PLREL ELCDSLGYF+KE CT KGE+VHAELRLQ+ DVLLVGEG R++KAAKG+AA+QL
Sbjct: 1438 PLRELNELCDSLGYFIKEKCTNKGELVHAELRLQMIDVLLVGEGCGRNKKAAKGQAAAQL 1497
Query: 1419 LKKLE--------VCEKRISKGA------SNTGKLGDDCRQTTKEDLPEPPSC-KRQKGT 1463
LK LE KR +GA S+ GD C Q+ ED E K+QK T
Sbjct: 1498 LKNLEKRGISYSRSNSKRRKQGADLVGVSSSLNMGGDACGQSNNEDSSELIKFHKKQKTT 1557
Query: 1464 EAAI----PAGDSCKKAYCM-TVGTPVVAPINMKKGGPRTSLFQLCKTMLWPMPTFETTE 1518
+ ++C + C + TPV+ INMKKGGPR+SL++LCK + WPMP+FE+ E
Sbjct: 1558 GMQLCTRTSIANNCLENACKPKLDTPVIKSINMKKGGPRSSLYELCKRLQWPMPSFESKE 1617
Query: 1519 SKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAALIMLHE 1578
+SR ++F EG E+R GF+SF+S I+LHIP G +EC GD RADKKSS DSAAL+MLHE
Sbjct: 1618 QRSRFPIIFGEGSERREGFNSFISSISLHIPNCGVMECRGDHRADKKSSLDSAALVMLHE 1677
Query: 1579 LERQGKIII 1587
L+R+GK+II
Sbjct: 1678 LQRRGKLII 1686
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359475987|ref|XP_002280293.2| PREDICTED: endoribonuclease Dicer homolog 3a-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2077 bits (5381), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1073/1661 (64%), Positives = 1252/1661 (75%), Gaps = 89/1661 (5%)
Query: 1 MHSP--LNSLKRSFGEVHSPNPPDMGSSGHDHAVDGPSSSTNSINFIPRIYQLKVFEVAK 58
MHSP N LKRSF E++ D + PSSS++S PR YQ KVFEVAK
Sbjct: 1 MHSPELANPLKRSFDEMNLKRDAD--DDSNPPPSPLPSSSSSSKELSPRSYQWKVFEVAK 58
Query: 59 RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTD 118
RRNTIAVL+TG GKTMIA+MLI++I QA+K++G K IIFLAPTVHLV+QQ+ VI+ T
Sbjct: 59 RRNTIAVLDTGTGKTMIALMLIREIGQAVKADGRKLFIIFLAPTVHLVNQQFKVIKDSTG 118
Query: 119 FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECH 178
FEVEEYYGAKGVDEW ++ W+KEI+++DVLVMTPQILLDALRKAFLSL+ VC +++DECH
Sbjct: 119 FEVEEYYGAKGVDEWSAKSWEKEISEHDVLVMTPQILLDALRKAFLSLETVCLMIVDECH 178
Query: 179 HATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVF 238
ATGNHPYTKIMKEFYHKS +KPK+FGMTASPV+RKGVSS+MDCE QISELES LD Q++
Sbjct: 179 RATGNHPYTKIMKEFYHKSVDKPKIFGMTASPVIRKGVSSSMDCENQISELESILDCQIY 238
Query: 239 TIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKD 298
TIED+TE+EVF+PSAKE RFYD S+F DLK KL+ SWSKFD L LQGS + YKD
Sbjct: 239 TIEDRTELEVFIPSAKEINRFYDASQFHNLDLKAKLKSSWSKFDNLLLNLQGSPMTQYKD 298
Query: 299 MDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCK 358
MDDK K LRK+LS+ HAKILYCLD+LGLICAYEAVK+C+E V AQEE E YRQSS QCK
Sbjct: 299 MDDKLKALRKRLSNDHAKILYCLDDLGLICAYEAVKVCIENVSNAQEEFEFYRQSSSQCK 358
Query: 359 YFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCI 418
FL+EVL +IG LP D +L+ D KAVD GYI+ KLHELLQLF SFG + +VLC+
Sbjct: 359 CFLQEVLGIIGGYLPHGDGNYLNSESDILKAVDKGYITPKLHELLQLFQSFGVARKVLCL 418
Query: 419 IFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLL 478
IFVERII AKV+ERF+KK+ +L+H TV+YLTGS +SVDAL PK Q+E LESFR GKVNLL
Sbjct: 419 IFVERIITAKVIERFIKKIIYLSHFTVSYLTGSNSSVDALAPKAQRETLESFRSGKVNLL 478
Query: 479 FATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLE----------- 527
FATDV+EEG+HVPNCS VIRFDLPKTV SY+QSRGRARQ +SQFI+MLE
Sbjct: 479 FATDVVEEGIHVPNCSCVIRFDLPKTVRSYVQSRGRARQSDSQFIIMLERGNTEQRDQLF 538
Query: 528 ---RSERSVTDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLP 584
RSE S+TDTA +RDP+ LKA T + SY V+STGASVT DSSV+LIHRYCE LP
Sbjct: 539 DIIRSEYSMTDTATNRDPDGYTLKAYTIEEMDSYFVDSTGASVTADSSVSLIHRYCEKLP 598
Query: 585 SDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQ 644
DKY+TPKP F + E YEC+LTLP NA FQTI+GP ++N +LSKQLVCLEAC+KLHQ
Sbjct: 599 GDKYFTPKPFFHFTYLEGMYECKLTLPPNAAFQTIIGPGNKNSHLSKQLVCLEACKKLHQ 658
Query: 645 VGALNDHLLPSVEEPSENNLISKKNESLPGAGTTKRKELHGTTPIRALSGRWGEKC-GVI 703
+GAL+DHLLP VEEPSEN++I K S GAGTTKRKELHGTT ALSG WG+K G I
Sbjct: 659 MGALDDHLLPYVEEPSENDIIVKSKGSAAGAGTTKRKELHGTTQTCALSGTWGDKIDGAI 718
Query: 704 LHAYKFNFACSIVTEIYSGFVLLIESELDNDVGNFELELYLVSKTVKATVSSSGQVHLDA 763
AYK +F+C+IV E+YSGFVLLIES+LD+DVGN E+ELYL+SK V+ +VSS GQV LDA
Sbjct: 719 FQAYKIDFSCNIVNELYSGFVLLIESKLDDDVGNIEMELYLISKFVRTSVSSCGQVSLDA 778
Query: 764 DQMSKAKCFQELFFNGLFGKLFVKSKSSG-SREFFLKRETNSLWSPSYMYLLLPLEIVNT 822
+Q+ KA F ELFFN LFG+LF+ SKSSG REF L + SLWS S MYLLLP+E N
Sbjct: 779 EQVMKAMRFHELFFNSLFGRLFIGSKSSGVRREFLLNTQQKSLWSSSNMYLLLPIESSNI 838
Query: 823 FGDGSWRINWSGINPCASVVEFIKEKSFLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVIH 882
D SWRINW GIN CASVVEF++++S L N++ GN SPC T +T C +H
Sbjct: 839 PSDESWRINWPGINSCASVVEFLEKRSQLSTGNMNDDTGNPSPCSTGLVETECKSISTVH 898
Query: 883 LANGSVDAKNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGNTDDDSK---TFVNYFSE 939
LAN SV NLK+MVVLAIHTGRIYSI+++V ++SAESPFDG+ D +S TF YF+
Sbjct: 899 LANNSVHVNNLKNMVVLAIHTGRIYSILDVVIDTSAESPFDGSADVNSSNYTTFAEYFNN 958
Query: 940 KYGIVLIHPGQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLV 999
KYGIVL++PGQPLL LKQSHN HNLLVNFND G K M +K Q HVHMPPELLV
Sbjct: 959 KYGIVLMYPGQPLLLLKQSHNAHNLLVNFNDEDALQTGQK--MLNEKAQTHVHMPPELLV 1016
Query: 1000 RVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCE 1059
++VPI+V+KS YLLPS++ RLESLMLASQLREEI + I SSLILEA+TTL C E
Sbjct: 1017 SIEVPITVLKSSYLLPSLIHRLESLMLASQLREEI-AFTTGSQISSSLILEAITTLRCSE 1075
Query: 1060 SFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGY 1119
SFSMERLELLGDSVLKYAVSCHLFL YPKKHEGQLSARRSW VCNSTLHKLGTDR LQGY
Sbjct: 1076 SFSMERLELLGDSVLKYAVSCHLFLKYPKKHEGQLSARRSWVVCNSTLHKLGTDRSLQGY 1135
Query: 1120 IRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMG 1179
IRD AFDPRRWVAPGQ S+RPVPC CGVD LEVPLDGKF T+DTK+VVGK CD GHRWMG
Sbjct: 1136 IRDGAFDPRRWVAPGQRSIRPVPCSCGVDALEVPLDGKFQTEDTKIVVGKSCDRGHRWMG 1195
Query: 1180 SKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINE 1239
SKTIADC EALIGAYYVGGGL AAL++MKW GID +LE SLVD+ I ASLR+Y+P+ NE
Sbjct: 1196 SKTIADCVEALIGAYYVGGGLNAALHLMKWFGIDVELEPSLVDEAIATASLRTYIPKANE 1255
Query: 1240 IKDIESKIGYEFTVKFLLQEAITHASVQEF---YCYQ----------------------- 1273
I+ +ESKIGYEF+VK LL EAITHA+ QE YCYQ
Sbjct: 1256 IEILESKIGYEFSVKGLLLEAITHATEQELGVGYCYQRLEFLGDSVLDVLITWHLYQSHR 1315
Query: 1274 ---------------------------NLYKHLQHCSTLLLSQITEYVKSFPKPGETTDS 1306
NL +HLQHCS LLL QI EY K + +
Sbjct: 1316 DIDPGELTDLRSASVNNESFAQVAVRRNLQQHLQHCSGLLLGQIKEYAKYLSGSDDVPNP 1375
Query: 1307 GPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIEL 1366
S K PKALGDL+ESI GA+LIDTKLNL+EVWRIFKP+LSPIVTPDKLELPPLREL EL
Sbjct: 1376 LQSTKGPKALGDLVESIAGAILIDTKLNLNEVWRIFKPLLSPIVTPDKLELPPLRELNEL 1435
Query: 1367 CDSLGYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEVCE 1426
CDSLGYF+KE CT KGE+VHAELRLQ+ DVLLVGEG R++KAAKG+AA+QLLK LE +
Sbjct: 1436 CDSLGYFIKEKCTNKGELVHAELRLQMIDVLLVGEGCGRNKKAAKGQAAAQLLKNLE--K 1493
Query: 1427 KRISKGASNTGKLGDDCRQTTKEDLPEPPSCKRQKGTEAAIPAGDSCKKAYCMTVGTPVV 1486
+ IS SN+ R+ DL S G + + Y V+
Sbjct: 1494 RGISYSRSNSK------RRKQGADLVGVSSSLNMGGDACGQSNNEDSSENYDFVFA--VI 1545
Query: 1487 APINMKKGGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITL 1546
INMKKGGPR+SL++LCK + WPMP+FE+ E +SR ++F EG E+R GF+SF+S I+L
Sbjct: 1546 KSINMKKGGPRSSLYELCKRLQWPMPSFESKEQRSRFPIIFGEGSERREGFNSFISSISL 1605
Query: 1547 HIPEFGNVECNGDPRADKKSSFDSAALIMLHELERQGKIII 1587
HIP G +EC GD RADKKSS DSAAL+MLHEL+R+GK+II
Sbjct: 1606 HIPNCGVMECRGDHRADKKSSLDSAALVMLHELQRRGKLII 1646
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|330370549|gb|AEC12444.1| ribonuclease III family protein DCL3 [Gossypium hirsutum] | Back alignment and taxonomy information |
|---|
Score = 2008 bits (5202), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1038/1655 (62%), Positives = 1230/1655 (74%), Gaps = 109/1655 (6%)
Query: 33 DGPSSSTNSINFIPR--------------------IYQLKVFEVAKRRNTIAVLETGAGK 72
+ PSSS+ +F PR YQL+V+EVAKRRN IA+L+TG GK
Sbjct: 12 EDPSSSSKPKDFNPRGFALFSFSFLSVVVICVILSFYQLQVYEVAKRRNIIALLDTGVGK 71
Query: 73 TMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDE 132
TMIAVMLIKD QAI+S KKLIIFLAPTVHLV+Q +IR + EVE+YYGAKGVDE
Sbjct: 72 TMIAVMLIKDFGQAIESTESKKLIIFLAPTVHLVNQVCFLIRESLNLEVEQYYGAKGVDE 131
Query: 133 WDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKE 192
W CW+KE ++DVLVMTPQILLDALRKAFLSLD+V ++IDECH ATGNHPY KIMKE
Sbjct: 132 WTLDCWEKETKEHDVLVMTPQILLDALRKAFLSLDMVSLMIIDECHRATGNHPYAKIMKE 191
Query: 193 FYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPS 252
FYHKS+NKPK+FGMTASPVV KGV S+ +C+GQ+SELE LDS ++TIED+TEME VPS
Sbjct: 192 FYHKSNNKPKIFGMTASPVVSKGVLSSNNCDGQMSELECVLDSLIYTIEDRTEMEACVPS 251
Query: 253 AKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSD 312
AKESCRF+D ++F DLK K+E SW K D SLS LQ S +KDMDDK K LRK+LS+
Sbjct: 252 AKESCRFFDPAQFSSLDLKAKVEASWLKTDGSLSNLQSSLQTSHKDMDDKLKNLRKRLSN 311
Query: 313 YHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSAL 372
HAK+L+CLD LGLICAYEAV ICLE +L EE + YR+S LQ K FLEEV IG +L
Sbjct: 312 DHAKVLHCLDNLGLICAYEAVNICLENILDTTEESKAYRESVLQYKNFLEEVQCRIGESL 371
Query: 373 PLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVER 432
PL DK FL+ GFDY KAVDLGYIS KLHELLQLF SFG++ QVLC+IFVERII AKV+ER
Sbjct: 372 PLGDKNFLNSGFDYLKAVDLGYISPKLHELLQLFQSFGETRQVLCLIFVERIITAKVIER 431
Query: 433 FVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPN 492
F KKV L+H V+Y+TGS TSVD+L PK+QKE LESFR GKVNLLF TDV+EEG+HVPN
Sbjct: 432 FAKKVSCLSHFMVSYMTGSNTSVDSLAPKIQKETLESFRSGKVNLLFTTDVVEEGIHVPN 491
Query: 493 CSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLE--------------RSERSVTDTAL 538
C YVIRFDLPKTV SY+QSRGRARQ+NS+FI+MLE RSE S+T++A+
Sbjct: 492 CCYVIRFDLPKTVRSYVQSRGRARQNNSEFIMMLERGNVKQRNQLYDIIRSEYSMTNSAI 551
Query: 539 SRDPEA--CFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFK 596
RDP++ C LK T+ +T +IV++TGASVT DS+V+LIH+YC LP DKYYTPKP F+
Sbjct: 552 KRDPDSDPCLLKDHTFEETNVFIVDATGASVTADSAVSLIHKYCGKLPGDKYYTPKPNFQ 611
Query: 597 YKSAEEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSV 656
+ S+E Y+C+LTLP NA QTIVGP SRN +L+KQLVCLEAC++LHQ+GAL+DHL PS+
Sbjct: 612 FTSSEGLYKCKLTLPVNAAVQTIVGPPSRNSHLAKQLVCLEACKQLHQMGALDDHLTPSI 671
Query: 657 EEPSENNLISKKNES----LPGAGTTKRKELHGTTPIRALSGRWGEKC-GVILHAYKFNF 711
EEPSEN ISK +S GAGTTKRKELHGTT I+AL G WGEK + AYKF+F
Sbjct: 672 EEPSENACISKGKDSGAGAGAGAGTTKRKELHGTTCIQALCGSWGEKSDDAVFFAYKFDF 731
Query: 712 ACSIVTEIYSGFVLLIESELDNDVGNFELELYLVSKTVKATVSSSGQVHLDADQMSKAKC 771
C+I+T +YSGFVLLIES+L +DVGN E++L+L+ K VKA+VSS GQV L+A+QM KAK
Sbjct: 732 KCNIITVVYSGFVLLIESKLADDVGNTEMDLFLIGKMVKASVSSCGQVRLNAEQMMKAKR 791
Query: 772 FQELFFNGLFGKLFVKSKSSGS-REFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRI 830
FQE FFNGLFGKLFV SKSSG+ REF L+ +T+SLWSPS MYLLLPLE +T RI
Sbjct: 792 FQEFFFNGLFGKLFVGSKSSGAPREFLLRDKTSSLWSPSRMYLLLPLEDNST---DELRI 848
Query: 831 NWSGINPCASVVEFIKEKSFLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSVDA 890
+W GI C EF+ + S LG Q ++ G N S T T C ++I AN SVDA
Sbjct: 849 HWPGITACTLAAEFLNKNSLLGTEQSDDGGSNPSLNSTGSPVTDCKETNIIRFANSSVDA 908
Query: 891 KNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGNTDDDSKTFVN---YFSEKYGIVLIH 947
+L++ VVLAIHTGRIY I+E V++ +AES F D S F N YF +KY IVL H
Sbjct: 909 NSLRNTVVLAIHTGRIYCIIEAVSDKTAESSFAETVDTVSSEFANFYEYFYKKYNIVLKH 968
Query: 948 PGQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISV 1007
PGQPL+ LKQSHNPHNLLVNFND G S K S++G+ +KP+ HVHMPPELL+ +DVP+SV
Sbjct: 969 PGQPLMLLKQSHNPHNLLVNFNDEGVSAKASQAGVVNEKPRFHVHMPPELLLVLDVPVSV 1028
Query: 1008 VKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLE 1067
+KSLYLLPS+M RLESLMLA+QLREEIN S N IPSS+ILEALTTL CCESFSMERLE
Sbjct: 1029 LKSLYLLPSLMHRLESLMLANQLREEINFCSSNIDIPSSMILEALTTLRCCESFSMERLE 1088
Query: 1068 LLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDP 1127
LLGDSVLKYAVSCHLFL YP KHEGQLSARRS AVCNSTLHKLGTD K+QGYIRDSAFDP
Sbjct: 1089 LLGDSVLKYAVSCHLFLRYPNKHEGQLSARRSLAVCNSTLHKLGTDHKIQGYIRDSAFDP 1148
Query: 1128 RRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCA 1187
RRWVAPGQ LRPVPC+CGVD+LEVPLD KF T+D KV VGK CD GHRW+ SKTI+DC
Sbjct: 1149 RRWVAPGQRVLRPVPCKCGVDSLEVPLDKKFQTEDPKVKVGKSCDRGHRWLCSKTISDCV 1208
Query: 1188 EALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKI 1247
EALIGAYY+ GGL+AAL++MKWLGIDA+L+ +V + I +ASLR+YVP EI IESK+
Sbjct: 1209 EALIGAYYLSGGLVAALHVMKWLGIDAELDPLVVAEVINQASLRTYVPNY-EIHMIESKV 1267
Query: 1248 GYEFTVKFLLQEAITHASVQEFYCYQ---------------------------------- 1273
GY F+VKF LQEA+TH S+ E YCYQ
Sbjct: 1268 GYNFSVKFFLQEALTHESLHESYCYQRLEFLGDSVLDLLITQYLYNHHTNIDPGELTDLR 1327
Query: 1274 ----------------NLYKHLQHCSTLLLSQITEYVKSFPKPGETTDSGPSMKAPKALG 1317
+L+KHLQHCSTLL +QI+EYV+SF + TT PS+K PKALG
Sbjct: 1328 SASVNNENFAQVAVRHDLHKHLQHCSTLLSNQISEYVQSFTESDNTTRLDPSIKGPKALG 1387
Query: 1318 DLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELCDSLGYFVKEN 1377
DL+ESIVGA+LIDT LNLD+VWRI +P+LSPIVTPDKLELPP REL ELCDSLGYF+KE
Sbjct: 1388 DLVESIVGAILIDTNLNLDKVWRIVEPLLSPIVTPDKLELPPFRELNELCDSLGYFIKEK 1447
Query: 1378 CTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEVCEKRISKGASNTG 1437
C KGE+VHAEL LQL LLVGEG +RSRK AKGKAAS LLK LE ++G S
Sbjct: 1448 CKNKGEVVHAELLLQLDHDLLVGEGFDRSRKVAKGKAASCLLKDLE------NRGISRKK 1501
Query: 1438 KLGD--DCRQTTKEDLPEPPSCKRQKGTEAAIPAGDSCKKAYCMTVGTPVVAPINMKKGG 1495
+ D D QT ++D EP KRQ+ A I D KKA T TPV+ + KKGG
Sbjct: 1502 RKHDCVDSSQTMEDDSLEPTIPKRQR--RAEIQLLDESKKACSATPATPVIVTVKTKKGG 1559
Query: 1496 PRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVE 1555
PRT+LF+LCK +LWPMP+ + TE KS + EG E++ GF SFVSKI L++P + +E
Sbjct: 1560 PRTTLFELCKKLLWPMPSIKATEHKSSAPMEIGEGPERKKGFISFVSKIILNVPGYDIIE 1619
Query: 1556 CNGDPRADKKSSFDSAALIMLHELERQGKIIISSS 1590
C GD +ADKKSS DSAAL ML+ELE++GK+II +
Sbjct: 1620 CTGDAKADKKSSSDSAALFMLYELEQRGKLIIEET 1654
|
Source: Gossypium hirsutum Species: Gossypium hirsutum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449489290|ref|XP_004158269.1| PREDICTED: LOW QUALITY PROTEIN: endoribonuclease Dicer homolog 3a-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1979 bits (5128), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1000/1622 (61%), Positives = 1211/1622 (74%), Gaps = 94/1622 (5%)
Query: 44 FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTV 103
FIPR YQ++VFEV RRNTIAVL TG+GKTMIAVMLIK+I +A+KS+ KKLIIFLAPTV
Sbjct: 37 FIPRRYQMEVFEVGMRRNTIAVLGTGSGKTMIAVMLIKEIGKAMKSSSDKKLIIFLAPTV 96
Query: 104 HLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAF 163
HLVHQQ++VI+ HTDFEV EYYGA GVD+W+ CW+KE ++ DVLVMTPQILLDALRKA+
Sbjct: 97 HLVHQQFNVIKDHTDFEVAEYYGAMGVDDWNMNCWEKETSERDVLVMTPQILLDALRKAY 156
Query: 164 LSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCE 223
L +C ++IDECH ATGNHPYTKIMKEFYHKSD+KPK FGMTASPV+RKGVSS++DCE
Sbjct: 157 FRLGTICLMIIDECHRATGNHPYTKIMKEFYHKSDSKPKXFGMTASPVIRKGVSSSVDCE 216
Query: 224 GQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDA 283
QI++LES LD+QV+ IEDK E+E++VPSAKE C FY+ + +LK K+E W KFDA
Sbjct: 217 CQIADLESILDAQVYAIEDKKEVEIYVPSAKEICIFYEPAMPQTMELKAKIEALWFKFDA 276
Query: 284 SLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKA 343
SLS Q + YKD+D K K L+K+LS H KI YCLDELG++CAYEA+K+ E V
Sbjct: 277 SLSNSQEAMQGHYKDVDSKLKALKKRLSSDHLKITYCLDELGIMCAYEAIKVLFENVSVP 336
Query: 344 QEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELL 403
EE ++YR+S LQ K+FLEE L VIG +L L ++ GFD KAV+LGYIS KL ELL
Sbjct: 337 NEESDVYRESFLQYKHFLEEALLVIGESLSLENENVPTLGFDLWKAVELGYISPKLFELL 396
Query: 404 QLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQ 463
QLF SFG S QVLC+IFVERIIAA V+ER VKKV L+H TV+Y+TG SV AL PKVQ
Sbjct: 397 QLFESFGVSRQVLCLIFVERIIAANVIERIVKKVENLSHFTVSYVTGCDASVGALAPKVQ 456
Query: 464 KEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFI 523
KE LE F GK+NLLF+TDV+EEG+HVPNCS+V+RFDLPKTV SY+QSRGRARQ+NSQ+I
Sbjct: 457 KETLELFCHGKLNLLFSTDVVEEGLHVPNCSFVVRFDLPKTVRSYVQSRGRARQNNSQYI 516
Query: 524 LMLE--------------RSERSVTDTALSRDPEACFLKACTYVKTKSYIVESTGASVTT 569
L+LE RS+RS+TD A+SRD +AC LK + ++T YIVE+TGASVT
Sbjct: 517 LLLERGNLKQRALLFDVIRSDRSMTDAAMSRDLDACVLKPFSLMETDCYIVEATGASVTA 576
Query: 570 DSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQTIVGPTSRNKNL 629
DSSV L+++YC+ LP DKY++PKPIF+ E +YEC+LTLP A QTIVGP++RN NL
Sbjct: 577 DSSVGLVYQYCKKLPGDKYFSPKPIFQLSYGEGSYECQLTLPPTAALQTIVGPSTRNSNL 636
Query: 630 SKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLPGAGTTKRKELHGTTPI 689
SKQLVCLEAC+KLHQ+GALNDHLLPSVEE SE+++ K N S AG+TKRKELHG T I
Sbjct: 637 SKQLVCLEACKKLHQMGALNDHLLPSVEEISESDMGLKSNASTSRAGSTKRKELHGRTAI 696
Query: 690 RALSGRWGEKC-GVILHAYKFNFACSIVTEIYSGFVLLIESELDNDVGNFELELYLVSKT 748
RALSG W E+ G AYKF+F+CS++ E+YSGFVLLIES+LD+DV NFELELYL+SK
Sbjct: 697 RALSGTWEEQVEGTTFQAYKFDFSCSVIYEVYSGFVLLIESKLDDDVSNFELELYLLSKM 756
Query: 749 VKATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKLFVKSKSSG-SREFFLKRETNSLWS 807
VKA+VS G+VHLDA+Q++KAKCFQELFFNGLFG+LF+ SK++G R+F L+++TN LW
Sbjct: 757 VKASVSFGGEVHLDAEQITKAKCFQELFFNGLFGRLFIGSKTTGKKRDFLLQKDTNPLWI 816
Query: 808 PSYMYLLLPLEIVNTFGDGSWRINWSGINPCASVVEFIKEKSFLGAAQCNNNGG--NSSP 865
S MYLLLP+++ + W+I+W I+ C SVVEF+K+ S L A + G +SSP
Sbjct: 817 SSNMYLLLPVDLPDDSTHDLWKIHWRAIDSCVSVVEFLKKNSSLDAERNYGAGAISDSSP 876
Query: 866 CRTSPCKTGCHGKDVIHLANGSVDAKNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGN 925
R + +TG + VIH AN +D +LKD VVLAIHTGRIYSIVE+V+N+SAESPFDGN
Sbjct: 877 SRNNSTETGSNAASVIHFANCVLDVHSLKDRVVLAIHTGRIYSIVEVVSNTSAESPFDGN 936
Query: 926 TDD---DSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGM 982
+D D TF +YF+++YGI L P QPLLRLKQSHNPHNLLVNF D G SG
Sbjct: 937 SDKGPPDYITFADYFNKRYGISLSFPKQPLLRLKQSHNPHNLLVNFKDEGFDKL--PSGP 994
Query: 983 NTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFH 1042
K+PQMHVHMPPEL++ +DVP V+KS YLLPS++ R ESLMLASQLR+EIN HS +
Sbjct: 995 AFKRPQMHVHMPPELVLSMDVPKGVLKSSYLLPSLIHRFESLMLASQLRKEINYHSNSLG 1054
Query: 1043 IPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAV 1102
I SSLILEALTTLG CE+FS+ERLELLGDSVLKYAVSCHLFL +P+KHEGQLS+RR +
Sbjct: 1055 ISSSLILEALTTLGSCENFSLERLELLGDSVLKYAVSCHLFLKFPEKHEGQLSSRRQQVI 1114
Query: 1103 CNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQD 1162
CN+TLH LGT LQGYIRDSAFDPRRWVAPGQ + RPVPC+CGVDT+EVPL KF T+D
Sbjct: 1115 CNATLHALGTKCGLQGYIRDSAFDPRRWVAPGQCTNRPVPCKCGVDTVEVPLHDKFCTED 1174
Query: 1163 TKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVD 1222
KVV+GK CD GHRW+ SKTIADCAEALIGAYYV GG+IAAL++MKWLGID +L+V+LV
Sbjct: 1175 PKVVLGKCCDKGHRWVVSKTIADCAEALIGAYYVDGGIIAALHVMKWLGIDVNLDVALVV 1234
Query: 1223 DCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQEF---YCYQ------ 1273
D IT ASLRS EI +ESKIGY+F VK LL EA+TH S QE YCYQ
Sbjct: 1235 DAITSASLRSCPLGDTEIATLESKIGYDFAVKGLLLEAVTHTSDQEIGVNYCYQRLEFLG 1294
Query: 1274 --------------------------------------------NLYKHLQHCSTLLLSQ 1289
NL +HLQHCS LL+SQ
Sbjct: 1295 DSVLDLLITWHYYQNYSDIDPGELTDLRSASVNNENFAQVAVRRNLQQHLQHCSGLLMSQ 1354
Query: 1290 ITEYVKSFPKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPI 1349
ITEYVK + +T K PK LGD++ESI GA+LIDTKLNLDEVW+I+KP+L+P
Sbjct: 1355 ITEYVKYLSESQDTGKPLHGNKGPKVLGDMVESIAGAILIDTKLNLDEVWKIYKPLLTPF 1414
Query: 1350 VTPDKLELPPLRELIELCDSLGYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKA 1409
VTPDKLELPPLRELIELCDSLGYF+K+ CT KGE HAELRLQL+D LL+GEG ER+RKA
Sbjct: 1415 VTPDKLELPPLRELIELCDSLGYFIKDKCTRKGETFHAELRLQLQDSLLIGEGYERTRKA 1474
Query: 1410 AKGKAASQLLKKLEVCEKRISKGASNTGKLGDDCRQTTKEDLPEPPSCKRQKGTEAAIPA 1469
A+G+AA +LL +LE S+ S K + PS + +P+
Sbjct: 1475 ARGEAAHRLLAQLETRGISYSRSGSKKRK--------------QNPS---HDESAMVLPS 1517
Query: 1470 GDSCKKAYC-MTVGTPVVAPINMKKGGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFC 1528
+C C V TPV+ PIN+KKGGPR++LF+LCK + WPMPTF T E+KSR +
Sbjct: 1518 SVNCSTDACDPNVETPVIGPINLKKGGPRSTLFELCKKLQWPMPTFNTVENKSRVQIEIG 1577
Query: 1529 EGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAALIMLHELERQGKIIIS 1588
EGLEKR GF+SF+S ITL IP G VEC G+ RADKKSSFDSA+L+ML EL++QG++II+
Sbjct: 1578 EGLEKRKGFNSFLSNITLQIPNAGYVECEGEARADKKSSFDSASLVMLQELQQQGRVIIN 1637
Query: 1589 SS 1590
S
Sbjct: 1638 DS 1639
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255550219|ref|XP_002516160.1| Ribonuclease III, putative [Ricinus communis] gi|223544646|gb|EEF46162.1| Ribonuclease III, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1921 bits (4977), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1001/1681 (59%), Positives = 1224/1681 (72%), Gaps = 123/1681 (7%)
Query: 1 MHSPLNSLKRSFGEVHS-PNPPDMGSSGHDHAVDGPSSSTN-----------SINFIPRI 48
M N LKRSF E+++ + DMG +G +H D ++S F PR
Sbjct: 5 MEQDRNPLKRSFNEMNNLQDFVDMGLNGTNHHHDHDAASQKPDSTITTSTTTGKGFNPRS 64
Query: 49 YQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQ 108
YQ+KVFEVA +RNTIAVLETGAGKTMIAVMLI++I QAIKSN FKKLIIFLAPTVHLV+Q
Sbjct: 65 YQVKVFEVAMKRNTIAVLETGAGKTMIAVMLIREIGQAIKSNDFKKLIIFLAPTVHLVNQ 124
Query: 109 QYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDI 168
QY+VI+ +T+F+V EYYGAKG+D W + W+KEIN++DVLVMTPQILLDALRKAFL+L++
Sbjct: 125 QYEVIKDNTNFKVGEYYGAKGIDGWSMKVWEKEINEHDVLVMTPQILLDALRKAFLNLEM 184
Query: 169 VCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISE 228
V ++IDECH TGNHP TKIMKEFYHK NKPK+FGMTASPVV+KGVSSA+DCE QISE
Sbjct: 185 VSLMIIDECHRTTGNHPCTKIMKEFYHKLSNKPKIFGMTASPVVQKGVSSAVDCEDQISE 244
Query: 229 LESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKL 288
LE+ LDSQ++TIED+TEM+V VPSA+E C+FYD ++ SD+K K+E SWSKFDASL L
Sbjct: 245 LETILDSQIYTIEDRTEMDVHVPSAREICKFYDIAQLYSSDIKSKIEASWSKFDASLLSL 304
Query: 289 QGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECE 348
QGS + YKD DD++KTL+++L + ++KIL CL+ELGLICAYEAVKICLE + +
Sbjct: 305 QGSIQSSYKDADDRYKTLQQRLYNDYSKILNCLEELGLICAYEAVKICLENS-PSTAAFD 363
Query: 349 IYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLS 408
IYR+ SL+CKYFLEEVL +IG+ LP D LD GFDY KAV L YIS KL+ELLQ+FLS
Sbjct: 364 IYREISLKCKYFLEEVLSIIGTYLPHGDSYLLDLGFDYLKAVRLSYISPKLYELLQVFLS 423
Query: 409 FGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLE 468
FG +VLC+IFV+RII AKV+ERFVKKV L H TV+Y+TGS TSVDALTPK Q+E +
Sbjct: 424 FGVDKEVLCLIFVDRIITAKVIERFVKKVAALVHFTVSYVTGSNTSVDALTPKTQRETMY 483
Query: 469 SFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLE- 527
+FR GKVNLLF+TDV+ EG+HVPNCS VI FDLPKTV Y QSRGRARQ++SQ+I+ML+
Sbjct: 484 AFRSGKVNLLFSTDVLREGIHVPNCSCVICFDLPKTVCCYAQSRGRARQNDSQYIIMLQR 543
Query: 528 -------------RSERSVTDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVN 574
RSE VT+TA++RDP+ LK C +T++YIV+ TGASVT DSSV
Sbjct: 544 GNVKQRDQLFDFIRSEWLVTNTAINRDPDVWTLKTCVPEETEAYIVDVTGASVTADSSVT 603
Query: 575 LIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLV 634
LI RYC LPSD+Y+TP+P F+++ E++++C++ LP++A FQTIVGP R++ L+KQL
Sbjct: 604 LIQRYCSKLPSDRYFTPRPTFEFECFEQSFQCKMMLPASAAFQTIVGPVCRSQQLAKQLA 663
Query: 635 CLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLPGAGTTKRKELHGTTPIRALSG 694
CLEAC++LHQ+GAL+DHLLPSVEEP+E++ ++ SL GAGTTKRKELHGTTPI ALSG
Sbjct: 664 CLEACKQLHQMGALDDHLLPSVEEPTEDDHTVRRKGSLAGAGTTKRKELHGTTPIHALSG 723
Query: 695 RWGEKC-GVILHAYKFNFACSIVTEIYSGFVLLIESELDNDVGNFELELYLVSKTVKATV 753
WGE G HAYKF F+CSIV+E YSG++LLIES+LD+DVGN EL+L+LV KTV+A+V
Sbjct: 724 SWGENLDGATFHAYKFEFSCSIVSEKYSGYILLIESKLDDDVGNIELDLFLVRKTVRASV 783
Query: 754 SSSGQVHLDADQMSKAKCFQELFFNGLFGKLFVKSKSSGS-REFFLKRETNSLWSPSYMY 812
SS GQVHLDA+QM KAKCF ELFFN LFGKLF SKSS S REF L++ET+ LW S MY
Sbjct: 784 SSCGQVHLDAEQMMKAKCFHELFFNALFGKLFSGSKSSRSPREFLLQKETSLLWILSNMY 843
Query: 813 LLLPLEIVNTFGDGSWRINWSGINPCASVVEFIKEKSFLGAAQCNNNGGNSSPCRTSPCK 872
LLLPLE + D SW+INW G+N C++VVEF+K+ FLGA N R
Sbjct: 844 LLLPLEAFSASSDESWKINWRGVNGCSNVVEFLKKNCFLGAEHYNGE-------RVRSSV 896
Query: 873 TGCHGKDVIHLANGSVDAKNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFD---GNTDDD 929
T C G + +H AN SVD + +KDMVVLAIHTG+IYS+VE+V ++SAESPF+ G
Sbjct: 897 TECSGGNAVHFANISVDVERVKDMVVLAIHTGKIYSVVEVVGDASAESPFEQNVGGAPSK 956
Query: 930 SKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQM 989
TF YF++KYGIVL+ P QPLL LKQSH PHNLL ++ K G+ K +
Sbjct: 957 FSTFSEYFNKKYGIVLLRPRQPLLLLKQSHKPHNLLNPPDE-----DTLKDGLVVAKQRQ 1011
Query: 990 HVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLIL 1049
MPPELLV +DVPI +KS YLLPS+M RLESLMLASQLR+EI C NFHIPS LIL
Sbjct: 1012 FARMPPELLVSIDVPIQTLKSSYLLPSLMYRLESLMLASQLRQEIACQVSNFHIPSLLIL 1071
Query: 1050 EALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHK 1109
EA+TT CE SMERLELLGDSVLKY+VSC LFL YP KHEGQLSA+R+ AVCNSTLH+
Sbjct: 1072 EAITTPRSCEKVSMERLELLGDSVLKYSVSCDLFLRYPTKHEGQLSAQRTRAVCNSTLHQ 1131
Query: 1110 LGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGK 1169
LG KLQGYIRDSAF PR WVAPGQ V C CGVDTLEVPLD KF T+D KV +
Sbjct: 1132 LGIGCKLQGYIRDSAFIPRYWVAPGQQPAFYVSCTCGVDTLEVPLDAKFQTEDPKVQIAI 1191
Query: 1170 PCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRAS 1229
C GHRWM SKTI+DC EA+IGAYYV GGL+AAL++M+WLG+D + + SLVD I AS
Sbjct: 1192 CCSKGHRWMCSKTISDCVEAVIGAYYVSGGLMAALHVMQWLGMDVEFDPSLVDKIIKTAS 1251
Query: 1230 LRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQE---FYCYQ------------- 1273
+RSY P+ +EIK IESK+GY F+VKFLLQEA+THAS+QE YCYQ
Sbjct: 1252 VRSYTPKEDEIKGIESKLGYTFSVKFLLQEAMTHASMQEQGIGYCYQRLEFLGDSVLDLL 1311
Query: 1274 -------------------------------------NLYKHLQHCSTLLLSQITEYVKS 1296
+LYKHLQHCSTLLLSQI EY++S
Sbjct: 1312 ITWHLYQNHTSMDPGELTDLRSACVSNENFAQVVVRRDLYKHLQHCSTLLLSQIKEYLES 1371
Query: 1297 FPKPGETTD-SGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKL 1355
F + E +GP K PKALGDLLESI GA+LID KLNLDEVWRIF P+LSP+ TP L
Sbjct: 1372 FHESDEVAKATGP--KGPKALGDLLESIAGAMLIDAKLNLDEVWRIFMPLLSPLATPQNL 1429
Query: 1356 ELPPLRELIELCDSLGYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAA 1415
ELPPLREL++LC+SLGYF+KE C ++VHAELRLQL DVLLVG G +RSRKAAKGKAA
Sbjct: 1430 ELPPLRELMQLCNSLGYFIKEKCINNNDIVHAELRLQLNDVLLVGNGCDRSRKAAKGKAA 1489
Query: 1416 SQLLKKLEVCEKRISKGASNTGKLGDDCRQTTKEDLPEPP---------SCKRQKGTEAA 1466
+ LLKKLE ++G + + +Q + + P K+ K E
Sbjct: 1490 THLLKKLE------NRGITYSWGHSKRRKQDSNHVVDSSPLDITNDKAKDHKKPKKLENQ 1543
Query: 1467 IPAGDSCKKAYCMTVGTPVVAPINMKKGGPRTSLFQLCKTMLWPMPTFETTESKSRTLLV 1526
PAG ++ ++ INMKKGGPRT LF+LCK + W PT+ +TE+KS T ++
Sbjct: 1544 SPAGSGGDPSF-----AGIIEAINMKKGGPRTDLFELCKKVQWTTPTYSSTENKSSTPIL 1598
Query: 1527 FCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAALIMLHELERQGKII 1586
F EG+E+ ++SFVS ITL+IP +G +EC GDPR DKKSS D+AAL ML+EL++QG +I
Sbjct: 1599 FDEGIER---YNSFVSTITLNIPFYGTIECTGDPRPDKKSSCDTAALAMLYELQKQGLLI 1655
Query: 1587 I 1587
I
Sbjct: 1656 I 1656
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356509849|ref|XP_003523657.1| PREDICTED: endoribonuclease Dicer homolog 3a-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1864 bits (4829), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 989/1683 (58%), Positives = 1213/1683 (72%), Gaps = 124/1683 (7%)
Query: 2 HSPLNSLKRSFGEVHSPNPPDMGSSGHDHAVD------------GPSSSTNSINFIPRIY 49
HS S KR+ + P+ DH D PS + N PR Y
Sbjct: 10 HSQDQSRKRNLPDADDSPAPNFHIDSSDHNQDQSKKRKQPNDEDSPSLESPCSNMNPRRY 69
Query: 50 QLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQ 109
Q++V+EVA+RRNTIAVL+TG+GKT+IAVML+K++ QAIK++G KKLIIFLAPTVHLV+QQ
Sbjct: 70 QIEVYEVARRRNTIAVLDTGSGKTLIAVMLMKEVGQAIKTSGVKKLIIFLAPTVHLVNQQ 129
Query: 110 YDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIV 169
+ I+ TDF+VEEYYGAKGVD W + W+KEI+ NDVLVMTPQILLDALRKAFL ++++
Sbjct: 130 FKNIKFLTDFQVEEYYGAKGVDTWTLKTWEKEISNNDVLVMTPQILLDALRKAFLRMEMI 189
Query: 170 CFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISEL 229
C IVIDECH GNHPYTKIMKEFYH+++ KPK+FGMTASPV +KGVSS MDCE QISEL
Sbjct: 190 CLIVIDECHRTIGNHPYTKIMKEFYHQANEKPKIFGMTASPVGKKGVSSTMDCEDQISEL 249
Query: 230 ESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQ 289
ES LDSQ +T+ED+TEM+ VPSAKESCR+YDQ++F LK K+E KFDA LS+ Q
Sbjct: 250 ESILDSQRYTVEDRTEMDRCVPSAKESCRYYDQARFSALSLKPKIEALSFKFDALLSENQ 309
Query: 290 GSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEI 349
+ YKD+++K KTL +++S+ AKIL+CL++LG++CAYEAVKIC E K++ ECEI
Sbjct: 310 SN----YKDVENKFKTLSQRMSNELAKILHCLEDLGILCAYEAVKICHENFSKSEGECEI 365
Query: 350 YRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSF 409
YR+ LQC FLEEV+ +I +L LADK L+ F+YS+A DLGYIS KL EL++LF SF
Sbjct: 366 YRKGYLQCITFLEEVIKLIEESLHLADKKILEVDFNYSQAEDLGYISPKLIELIKLFQSF 425
Query: 410 GKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLES 469
G+S+QVLC+IFV+RII AKV++RF K VP ++H TV+YLTG+ TSVDAL PK QKE+L+S
Sbjct: 426 GESSQVLCLIFVDRIITAKVIQRFAKTVPNISHFTVSYLTGNNTSVDALAPKRQKEILDS 485
Query: 470 FRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLER- 528
FR GKVNLLF TDV+EEG+HVPNCS VIRFDLPKTV SY+QSRGR+RQ NSQF++MLER
Sbjct: 486 FRSGKVNLLFTTDVLEEGIHVPNCSCVIRFDLPKTVRSYVQSRGRSRQANSQFVVMLERG 545
Query: 529 -------------SERSVTDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNL 575
SERS+TD ++ ++ E+ L+AC KT +Y VESTGAS T DSSV+L
Sbjct: 546 NLKQRDQLFDIIRSERSMTDASIYKEHESS-LRACMVGKTNAYYVESTGASFTLDSSVSL 604
Query: 576 IHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVC 635
IHRYC LP DKY KP F++ S E Y+C+L LPSN+ FQTI+GP+ ++ L+K L C
Sbjct: 605 IHRYCGTLPRDKYSCVKPNFEFLSVEGGYQCKLILPSNSAFQTIIGPSGKDMRLAKHLAC 664
Query: 636 LEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLPGAGTTKRKELHGTTPIRALSGR 695
EAC+KLHQ+GALN+HL+P +E+ SE++ I K ES GAGTTKRKELHG I ALSG
Sbjct: 665 FEACKKLHQMGALNEHLVPLIEDSSEDDHIVKNKESSSGAGTTKRKELHGKANIHALSGA 724
Query: 696 WGEKCG-VILHAYKFNFACSIVTEIYSGFVLLIESELDNDVGNFELELYLVSKTVKATVS 754
WG+K V +AYKF F C+IV+EIYSGF LLIESELD DVGN L+LYLVSK VKA+VS
Sbjct: 725 WGDKLTRVKFNAYKFEFTCNIVSEIYSGFALLIESELDEDVGNVNLDLYLVSKIVKASVS 784
Query: 755 SSGQVHLDADQMSKAKCFQELFFNGLFGKLFVKSKSSGSREFFLKRETNSLWSPSYMYLL 814
S GQV LDA+QM +AKCF ELFFNGLFG+L +KSKS+G REF L+++TNSLWSP ++YLL
Sbjct: 785 SCGQVDLDAEQMMRAKCFHELFFNGLFGRLVLKSKSAGEREFLLQKDTNSLWSPKHLYLL 844
Query: 815 LPLEIVNTFGDGSWRINWSGINPCASVVEFIKEKSFLGAAQCNNNGGNSSPCRTSPCKTG 874
LPLE +N +GS +INW GIN CAS ++F++ K L C++NG +SP TS +
Sbjct: 845 LPLEKLNDICEGSLQINWCGINSCASAIKFLRRKFSLVTGDCDDNGTITSPHDTSSSEME 904
Query: 875 CHGKDVIHLANGSVDAKNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGNTDD--DSKT 932
C G + IH AN VDA N+KD VVLAIHTG+IY I+EI +N SAESPF GN + +S T
Sbjct: 905 CVGANKIHFANCVVDADNIKDRVVLAIHTGKIYCIIEIDSNLSAESPFYGNNEKSKESIT 964
Query: 933 FVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMHVH 992
F +YFS+ YGI L HPGQP+LRLKQSHNPHNLL NF + K SK G K +HVH
Sbjct: 965 FSDYFSKSYGISLRHPGQPMLRLKQSHNPHNLLFNFYE---EDKSSKIGPAASKLPVHVH 1021
Query: 993 MPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEAL 1052
+PPELL +DV V+KSLYLLPS+M R+ESLML+SQLREEI+ + F+I SSLILE+L
Sbjct: 1022 IPPELLYILDVKRDVLKSLYLLPSLMYRIESLMLSSQLREEIDGQTSKFNIRSSLILESL 1081
Query: 1053 TTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGT 1112
TTL C ESFSMERLELLGDSVLKY VSCHLFL YPKKHEGQLSARRS AVCNSTLHKLGT
Sbjct: 1082 TTLRCSESFSMERLELLGDSVLKYVVSCHLFLKYPKKHEGQLSARRSSAVCNSTLHKLGT 1141
Query: 1113 DRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCD 1172
DRKLQGYIRDSAF+PRRWVAPGQ S+ V C+CG++TLEVPLD KF T+D KVVVGK CD
Sbjct: 1142 DRKLQGYIRDSAFEPRRWVAPGQRSIHLVCCDCGLETLEVPLDAKFHTEDPKVVVGKFCD 1201
Query: 1173 MGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRS 1232
GH WM SKTIADC EALIGAYYV GGL A+L +MKWLGI A+LE+SLVD+ IT ASLR+
Sbjct: 1202 RGHCWMCSKTIADCVEALIGAYYVDGGLFASLNVMKWLGIGAELELSLVDEAITAASLRT 1261
Query: 1233 YVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQEF---YCYQ---------------- 1273
+P+ +EI +E KIGYEF+VK LL EAITH S +E CY+
Sbjct: 1262 CLPKESEIASLEKKIGYEFSVKGLLLEAITHLSEKELGIGCCYERLEFLGDSVLDLLITW 1321
Query: 1274 ----------------------------------NLYKHLQHCSTLLLSQITEYVKSFPK 1299
NL++HL H S LLLSQI+EYVK +
Sbjct: 1322 HLYQSHTDIDPGVLTDLRSASVNNDNFAQVAVRHNLHQHLLHSSGLLLSQISEYVKVISE 1381
Query: 1300 PGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPP 1359
S PS+ APKALGD++ESIVGA+LIDTKL+LD+VW +F +LSPIVTPDKLELPP
Sbjct: 1382 SDPR--SLPSISAPKALGDVVESIVGAILIDTKLSLDQVWNVFYSLLSPIVTPDKLELPP 1439
Query: 1360 LRELIELCDSLGYF--VKENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQ 1417
REL ELCDSLGYF VKENC G +H E+ +QL + LLV EG+ ++K AKG+AA
Sbjct: 1440 FRELNELCDSLGYFVKVKENCEKVGSAMHVEVSVQLPNALLVREGKGANKKTAKGEAAFY 1499
Query: 1418 LLKKLEVCEKRISKGA-------------SNTGKLGDDCRQTTKEDLPEPPSCKRQKGTE 1464
LLK LE ++ IS G+ + L D +E EP S KR E
Sbjct: 1500 LLKDLE--KQGISHGSFMSKGKRDNPDHVYGSSHLKMDSSILIEEHSSEPASHKRHILDE 1557
Query: 1465 AAIPAGDSCKKAYCMTVGTPVVAPINMKKGGPRTSLFQLCKTMLWPMPTFETTESKSRTL 1524
+ T + INMKKGGPRT+L+++CK + WP+PTF++TE K R+L
Sbjct: 1558 TNL---------------TAINLSINMKKGGPRTTLYEVCKKLQWPVPTFDSTEYKDRSL 1602
Query: 1525 LVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAALIMLHELERQGK 1584
CEGL+ G + FVSKITL IP +GN+E G+ R+DKK+SFDSAA+ ML EL+R GK
Sbjct: 1603 FESCEGLQGSKGQNCFVSKITLCIPNYGNIESKGEARSDKKTSFDSAAVQMLLELQRLGK 1662
Query: 1585 III 1587
+ I
Sbjct: 1663 VEI 1665
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224141703|ref|XP_002324204.1| dicer-like protein [Populus trichocarpa] gi|222865638|gb|EEF02769.1| dicer-like protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1858 bits (4812), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 965/1610 (59%), Positives = 1150/1610 (71%), Gaps = 191/1610 (11%)
Query: 49 YQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQ 108
YQ KVFEVA +RNTIAVLETGAGKTMIAVMLIK I QA+ +G K+LI+FLAPTVHLV+Q
Sbjct: 1 YQSKVFEVAVKRNTIAVLETGAGKTMIAVMLIKQIGQAVFYSGVKRLILFLAPTVHLVNQ 60
Query: 109 QYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDI 168
I+ T+F V EYYGAKG+DEW + W+KEI+++DVLVMTPQILLDALRKAFL+L +
Sbjct: 61 AC-FIKSQTNFRVGEYYGAKGIDEWSLKSWEKEIDEHDVLVMTPQILLDALRKAFLNLKM 119
Query: 169 VCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISE 228
V +++DECH +TGNHPY KIMK
Sbjct: 120 VSLLILDECHRSTGNHPYKKIMK------------------------------------- 142
Query: 229 LESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKL 288
++TIED+ E+ V+VPSAKE CRFYD++ +LK K+E SWSKFDAS+ L
Sbjct: 143 --------IYTIEDRAEVHVYVPSAKELCRFYDKAWCSYVELKDKIEASWSKFDASMLAL 194
Query: 289 QGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECE 348
QGS +CYKDMDDK K RKQLS HAKIL CL++LGLICAYEA+K+CLE EC+
Sbjct: 195 QGSTQSCYKDMDDKLKATRKQLSKDHAKILNCLEDLGLICAYEAIKVCLENAGNPTGECK 254
Query: 349 IYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLS 408
+Y++ SLQC+YFLE+VLH+IG +L D LD GFD S A+ GYIS KLHELLQLFLS
Sbjct: 255 LYQEISLQCRYFLEDVLHIIGESLLHGDNFSLDHGFDCSAALGFGYISPKLHELLQLFLS 314
Query: 409 FGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLE 468
FG++ +VLC+IFVERII AKVVERF+KKV L H TV+YLTG+ S DAL PK+Q E LE
Sbjct: 315 FGEAREVLCLIFVERIITAKVVERFMKKVEVLAHFTVSYLTGTNASADALAPKMQMETLE 374
Query: 469 SFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLER 528
SFR GKVNLLFATDV+EEG+HVPNCS VIRFDLPKTV SY+QSRGRARQ+NS FI MLER
Sbjct: 375 SFRSGKVNLLFATDVVEEGIHVPNCSCVIRFDLPKTVRSYVQSRGRARQNNSHFITMLER 434
Query: 529 --------------SERSVTDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVN 574
SE S+TDTA++RDP LKAC K+Y+V+ TGASVT DSS
Sbjct: 435 GNTKQRDQLFEIIRSEWSMTDTAINRDPNVWNLKACASEAAKAYVVDVTGASVTADSS-- 492
Query: 575 LIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLV 634
LP NA FQT+VGPT RN+ L+KQLV
Sbjct: 493 -----------------------------------LPPNAAFQTLVGPTCRNQQLAKQLV 517
Query: 635 CLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLPGAGTTKRKELHGTTPIRALSG 694
CLEAC+KLHQ+GAL+DHLLPSVEEPSE ++ K+ S GAGTTKRKELHGT I ALSG
Sbjct: 518 CLEACKKLHQMGALDDHLLPSVEEPSEIAVVKSKSTS-AGAGTTKRKELHGTACIHALSG 576
Query: 695 RWGEKC-GVILHAYKFNFACSIVTEIYSGFVLLIESELDNDVGNFELELYLVSKTVKATV 753
WGEK G HAYKF+F+CSIV++IYSGF+LLIES+LD+DVGN EL+LYLV+K VK+++
Sbjct: 577 SWGEKLDGATFHAYKFDFSCSIVSQIYSGFILLIESKLDDDVGNIELDLYLVAKIVKSSI 636
Query: 754 SSSGQVHLDADQMSKAKCFQELFFNGLFGKLFVKSKSSGSREFFLKRETNSLWSPSYMYL 813
SS G VHLDA QM+KAK FQE FFNGLFGKLF SKSS REF L++ET LWSPS MYL
Sbjct: 637 SSCGVVHLDAAQMTKAKRFQEFFFNGLFGKLFTGSKSS--REFLLQKETTLLWSPSNMYL 694
Query: 814 LLPLEIVNTFGDGSWRINWSGINPCASVVEFIKEKSFLGAAQCNNNGGNSSPCRTSPCKT 873
LLPLE + + +I+W GI C+SVVE++K SFL AA+ + GGN P
Sbjct: 695 LLPLEPWSISSNDWCKIDWKGIEACSSVVEYLK-NSFL-AARSYSGGGNPLPDNVQSSTI 752
Query: 874 GCHGKDVIHLANGSVDAKNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGNTDDDSK-- 931
C+G ++IH AN V+ +N+KDMVVLAIHTGRIYSIV++VN+SSAES F+GN D+ ++
Sbjct: 753 ECNGTNLIHFANALVNVENIKDMVVLAIHTGRIYSIVKVVNDSSAESAFEGNADNVTEFS 812
Query: 932 TFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMHV 991
T+ YF+++YGIVL+HPGQPLLRLKQSHNPHN LVNFND G SK GM +K Q HV
Sbjct: 813 TYTEYFNKRYGIVLMHPGQPLLRLKQSHNPHNHLVNFNDEGLLVCDSKDGMVGRKQQQHV 872
Query: 992 HMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEA 1051
HMPPELL+++DVPISVVKS+YL+PS+M RLE LMLASQLR+EI+CH+ NF+IPSSLILEA
Sbjct: 873 HMPPELLIKIDVPISVVKSIYLMPSLMHRLECLMLASQLRQEIDCHAPNFYIPSSLILEA 932
Query: 1052 LTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLG 1111
+TTL CCESFSMERLELLGDSVLKYAVSCHLFL YP KHEGQLS+ RS AVCNSTLHKLG
Sbjct: 933 ITTLRCCESFSMERLELLGDSVLKYAVSCHLFLKYPNKHEGQLSSWRSGAVCNSTLHKLG 992
Query: 1112 TDRKLQGYIRDSAFDPRRWVAPGQLSLR-PVPCECGVDTLEVPLDGKFFTQDTKVVVGKP 1170
TD K+QGYI DSAFDPRRW APGQ S+R P PC+CGVDTLEVPLD KF T+ V VGKP
Sbjct: 993 TDCKVQGYILDSAFDPRRWAAPGQKSVRTPAPCKCGVDTLEVPLDRKFQTESAIVKVGKP 1052
Query: 1171 CDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASL 1230
CD GHRWMGSKTI+DC E++IGAYYV GGLIAA+++MKW GI+A+L+ SL+ + IT ASL
Sbjct: 1053 CDSGHRWMGSKTISDCVESVIGAYYVSGGLIAAIHVMKWFGINAELDPSLISEAITSASL 1112
Query: 1231 RSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQE---FYCY--------------- 1272
RSY+P+ +EIK +ESK+GY F VKF+LQEA+THAS+QE YCY
Sbjct: 1113 RSYIPKEDEIKSLESKLGYTFGVKFVLQEAMTHASIQEQGVTYCYQRLEFLGDSVLDLLI 1172
Query: 1273 -----------------------------------QNLYKHLQHCSTLLLSQITEYVKSF 1297
QNLY HL HCSTLL SQITEYV SF
Sbjct: 1173 TWHLYQSHTDVDPGELTDLRSASVNNDNFAQVAVKQNLYTHLLHCSTLLQSQITEYVNSF 1232
Query: 1298 PKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLEL 1357
+ + T KAPKALGDL+ESI GA+LIDTK NLD VWRIFKP+LSPIVTP+KLEL
Sbjct: 1233 HESDQGT------KAPKALGDLIESIAGALLIDTKFNLDGVWRIFKPLLSPIVTPEKLEL 1286
Query: 1358 PPLRELIELCDSLGYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQ 1417
PPLREL+ELCDS+G FVKE CT K EMVHA+L +QL + LL GEG E++RKAAKGKAAS
Sbjct: 1287 PPLRELVELCDSIGVFVKEKCTKKAEMVHAQLWVQLDNELLSGEGYEKNRKAAKGKAASC 1346
Query: 1418 LLKKLEVCEKRISKGASNTGKLGDDCRQTTKEDLPEPPSCKRQKGTEAAIPAGDSCKKAY 1477
LLKKL+VC A + E L + P
Sbjct: 1347 LLKKLQVCNSGNCNHAFFCFLMNSIVPSNIVEYLAKSPP--------------------- 1385
Query: 1478 CMTVGTPVVAPINMKKGGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGF 1537
V+ IN KKGGPRTSL+ LCK + W MPTF+TTE+KSRT + F EG +KRTGF
Sbjct: 1386 -----FAVIESINKKKGGPRTSLYDLCKKVQWTMPTFDTTETKSRTAIEFGEGPDKRTGF 1440
Query: 1538 SSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAALIMLHELERQGKIII 1587
+S+VSKI ++IP +G VEC G+ ADKK+S+DSAAL ML+ELE++G++II
Sbjct: 1441 NSYVSKIIMNIPSYGVVECAGEASADKKTSYDSAALAMLNELEKRGQLII 1490
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357465903|ref|XP_003603236.1| Endoribonuclease Dicer-like protein [Medicago truncatula] gi|355492284|gb|AES73487.1| Endoribonuclease Dicer-like protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1774 bits (4594), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 947/1732 (54%), Positives = 1193/1732 (68%), Gaps = 173/1732 (9%)
Query: 7 SLKRSFGEVHS-PNPPDMGSSGHDHAVDGPSSSTNSI-NFIPRIYQLKVFEVAKRRNTIA 64
+LKR F +++ PN D P+ I N +PR QL+ FEVAK+RNTIA
Sbjct: 22 NLKRKFDHLYAKPNVEQ----------DSPAQEETLIANLVPRRDQLEAFEVAKKRNTIA 71
Query: 65 VLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEY 124
+++TG+GKT+IA++LIK+ QAI+S+G KKLI+FLAPTVHL Q I+++TD +VEEY
Sbjct: 72 IMDTGSGKTLIAILLIKETGQAIRSSGVKKLIVFLAPTVHL---QCKNIKLNTDLQVEEY 128
Query: 125 YGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNH 184
YG+KGVD W+ + WQKEI+ NDV+VMTPQILLDA RKAFLS++++C +VIDECH A+GNH
Sbjct: 129 YGSKGVDTWNLKSWQKEISDNDVMVMTPQILLDAFRKAFLSIEMICLMVIDECHWASGNH 188
Query: 185 PYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKT 244
PY KIM EFYH+++ KPK+FGMTASPV ++GVSS + CEGQIS+LE+ LDS+ + ++D+T
Sbjct: 189 PYAKIMAEFYHQANEKPKIFGMTASPVGKRGVSSTLVCEGQISDLENILDSRSYVVKDRT 248
Query: 245 EMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHK 304
EM+V++PSAKESCRFYD ++F LK K+E SWSK D LS+ Q YKDMD K K
Sbjct: 249 EMDVYIPSAKESCRFYDPARFHALSLKPKIEASWSKCDVLLSEFQSD----YKDMDQKFK 304
Query: 305 TLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEV 364
L +++S+ AKILYCL++LGL+CAYEA KIC +K K ECE+YR+++LQC +EEV
Sbjct: 305 ALHQRMSNELAKILYCLEDLGLLCAYEAAKICQQKFSKIHGECEVYRKANLQCVTIIEEV 364
Query: 365 LHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFG-------------- 410
+ +I +L LAD++ LD FD SKAV +GYIS KL EL++LF +FG
Sbjct: 365 IKIIEESLHLADEMILDVEFDCSKAVGMGYISPKLLELIKLFETFGYVFTKVTLALNVFT 424
Query: 411 -----------------KSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTT 453
+ +Q+LC+IFVERII AKV+ERFVKKV ++HLTVAY+TGS T
Sbjct: 425 RTNIGINCISINEYKRVEPSQLLCLIFVERIITAKVIERFVKKVSQISHLTVAYVTGSNT 484
Query: 454 SVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRG 513
S DAL K QKE+L+SFR GKVNLLF TDV+EEG+HVPNCS VIRFDLP TV SYIQSRG
Sbjct: 485 SADALARKRQKEILDSFRSGKVNLLFTTDVLEEGIHVPNCSCVIRFDLPTTVCSYIQSRG 544
Query: 514 RARQHNSQFILMLER--------------SERSVTDTALSRDPEACFLKACTYVKTKSYI 559
R+R+ NSQFILMLER SERS+ D A+S+D E+ L+A T KT+SY
Sbjct: 545 RSRRANSQFILMLERGNLKQRNQLFDIIRSERSMNDAAVSKDHES-NLRAFTVRKTESYC 603
Query: 560 VESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEA-YECELTLPSNAPFQT 618
V+STGASVT DSSV+LI++YCE LP DKY + KP F E + C+L LP NA FQT
Sbjct: 604 VDSTGASVTLDSSVSLINQYCEKLPRDKYSSAKPNFVSLPMEGGGHVCKLILPPNAAFQT 663
Query: 619 IVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLPGAGTT 678
+VGP+ ++ +K LVCLEAC+KLHQ+GALNDHL+P VE+P E + I K ES A
Sbjct: 664 LVGPSGKDVRQAKTLVCLEACKKLHQMGALNDHLVPFVEDPLEADNIIKNKESSAAAAAG 723
Query: 679 ----KRKELHGTTPIRALSGRWGEKC-GVILHAYKFNFACSIVTEIYSGFVLLIESELDN 733
KRKELHGT +RAL G WG+K G HAYKF F C+IV+EIYSGFVLL+ES+LD+
Sbjct: 724 AGTTKRKELHGTASVRALCGSWGDKPDGAKFHAYKFEFKCNIVSEIYSGFVLLVESKLDD 783
Query: 734 DVGNFELELYLVSKTVKATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKLFVKSKS-SG 792
DVGN EL+LYL+SK VK +V S GQV LDA+Q++KAK F ELFFNGLFG+L KS + G
Sbjct: 784 DVGNIELDLYLISKMVKTSVISCGQVDLDAEQVTKAKGFHELFFNGLFGRLIRKSTTVQG 843
Query: 793 SREFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCASVVEFIKEK-SFL 851
REF L++++ LWSP YLLLPLE N S +I+WS IN CAS +EF++++ S +
Sbjct: 844 EREFLLQKDSELLWSPKNSYLLLPLEKSNDICIRSLQIHWSAINSCASAIEFVRQRFSLV 903
Query: 852 GAAQCNNNGGNSSPCRTS-------PCKTG------------------CHGKDVIHLANG 886
+N+ S PC T PC T C ++ H AN
Sbjct: 904 TEVSDDNSKIISPPCDTDNSKIISPPCDTDNRKIISPPCDTRSSSDMECESTNMFHFANC 963
Query: 887 SVDAKNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGNTD----DDSKTFVNYFSEKYG 942
VD ++KD V LAIHTG++Y I+++V+NSSAESPFDGN+D +D TF YF ++YG
Sbjct: 964 VVDVSSVKDNVALAIHTGKVYCIIDVVDNSSAESPFDGNSDKSGAEDKMTFTQYFQKRYG 1023
Query: 943 IVLIHPGQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVD 1002
I L HP QPLLRLKQ HN HNL +N + G K S+ G K +HVH+P ELL +D
Sbjct: 1024 ITLRHPEQPLLRLKQGHNAHNLFLNLPEEDGGDKSSQVGPVAPKVPVHVHIPSELLCLLD 1083
Query: 1003 VPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFS 1062
V V KS+YLLPS+M R+ESLML+SQLR EIN H+ NF IPSSL+LEALTTL CCE FS
Sbjct: 1084 VKRDVYKSMYLLPSLMYRIESLMLSSQLRAEINGHTDNFKIPSSLVLEALTTLRCCEKFS 1143
Query: 1063 MERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRD 1122
MERLELLGDSVLKYAVSCHL+L YPKKHEG LS+ R WAV NSTLHKLGTD LQGYIRD
Sbjct: 1144 MERLELLGDSVLKYAVSCHLYLKYPKKHEGHLSSLRQWAVRNSTLHKLGTDHNLQGYIRD 1203
Query: 1123 SAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKT 1182
SAF+PRRW+APGQ + VPC+CG++TLEVPLD KF T+D KVVVGK CD GHRWM SKT
Sbjct: 1204 SAFEPRRWIAPGQDCIHTVPCDCGLETLEVPLDVKFHTEDPKVVVGKLCDRGHRWMCSKT 1263
Query: 1183 IADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKD 1242
IADC EALIGAYYVGGGLIA+L+MMKWLGID+ LE S+VD IT ASL +Y P++NEI
Sbjct: 1264 IADCVEALIGAYYVGGGLIASLHMMKWLGIDSGLEPSMVDKAITAASLHTYTPKVNEIAS 1323
Query: 1243 IESKIGYEFTVKFLLQEAITHASVQEF---YCYQ-------------------------- 1273
+E+KIGYEF+VK LL EA TH S E CY+
Sbjct: 1324 LEAKIGYEFSVKGLLVEATTHLSESEHGTGCCYERLEFLGDSVLDLLITWHLFQSHTEID 1383
Query: 1274 ------------------------NLYKHLQHCSTLLLSQITEYVKSFPKPGETTDSGPS 1309
NL++HL H S LL SQI EY K +P +
Sbjct: 1384 PGELTDLRSASVNNENFAQAAVRRNLHQHLLHSSGLLQSQILEYAKVISEPEDNAVPLQG 1443
Query: 1310 MKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELCDS 1369
+KAPKALGDL+ESI GA+LIDTKL+LD+VW++F P+LSPIVTP+KLELPPLREL++L DS
Sbjct: 1444 IKAPKALGDLVESIAGAILIDTKLDLDQVWKVFNPLLSPIVTPEKLELPPLRELMQLSDS 1503
Query: 1370 LGYFVKENCT--LKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEVCEK 1427
LGYFVK + KG M H E+R+QL + LV EG+ ++K+AKG AA QLLK LE ++
Sbjct: 1504 LGYFVKVKVSHDKKGTMEHVEIRVQLPNERLVREGKGPNKKSAKGDAAFQLLKDLE--KR 1561
Query: 1428 RISKGASNTGKLGD----DCRQTTKEDLPEPPSCKRQK-------GTEAAIPAGDSCKKA 1476
IS +S K+ D C+ ++ P+P + K+ K E+ D KA
Sbjct: 1562 GISYSSSKGKKVMDYTIPACQ--IEDQPPKPVAIKKPKLDKTNSAADESTGDLKDVSSKA 1619
Query: 1477 YCMTVGTPVVAPINM-KKGGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRT 1535
+ PVV+ I M KKGGPR+ L+++CK LWP+P+F++TE K RTL C+GLE
Sbjct: 1620 SDTSGSIPVVSSIKMNKKGGPRSELYEVCKKKLWPLPSFDSTEYKDRTLFESCKGLEGSK 1679
Query: 1536 GFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAALIMLHELERQGKIII 1587
G + FVSKITL IP +G+++C G+ R+DKKSS+DSAA+ L+EL+R GKI+I
Sbjct: 1680 GLNCFVSKITLGIPGYGDIKCQGEARSDKKSSYDSAAVQALYELQRLGKIMI 1731
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|115441737|ref|NP_001045148.1| Os01g0909200 [Oryza sativa Japonica Group] gi|75321191|sp|Q5N870.1|DCL3A_ORYSJ RecName: Full=Endoribonuclease Dicer homolog 3a; AltName: Full=Dicer-like protein 3a; Short=OsDCL3a gi|56785369|dbj|BAD82327.1| putative Endoribonuclease Dicer homolog [Oryza sativa Japonica Group] gi|113534679|dbj|BAF07062.1| Os01g0909200 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 1489 bits (3856), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 817/1656 (49%), Positives = 1051/1656 (63%), Gaps = 151/1656 (9%)
Query: 43 NFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPT 102
+F PR YQL V+EVA RRNTIA+L+TGAGKTMIAVMLIK+ + ++ K+IIFLAPT
Sbjct: 29 DFTPRRYQLDVYEVAMRRNTIAMLDTGAGKTMIAVMLIKEFGKINRTKNAGKVIIFLAPT 88
Query: 103 VHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA 162
V LV QQ +VI +HTDFEVE+YYGAKGVD+W WQ++I+K V+VMTPQ+ L ALR A
Sbjct: 89 VQLVTQQCEVIEIHTDFEVEQYYGAKGVDQWTGPRWQEQISKYQVMVMTPQVFLQALRNA 148
Query: 163 FLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDC 222
FL LD+V ++ DECHHATGNHPYT+IMKEFYHKS++KP VFGMTASPV+RKG+SS +DC
Sbjct: 149 FLILDMVSLMIFDECHHATGNHPYTRIMKEFYHKSEHKPSVFGMTASPVIRKGISSHLDC 208
Query: 223 EGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFD 282
EGQ ELE+ LD++++T+ D+ E+E VPSAKE CR+YD C DL +L V SK+D
Sbjct: 209 EGQFCELENLLDAKIYTVSDREEIEFCVPSAKEMCRYYDSKPVCFEDLSEELGVLCSKYD 268
Query: 283 ASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEK--- 339
A +++LQ + + YKD DD K +++LS AKI YCLD++GLICA EA KIC+E+
Sbjct: 269 ALITELQNKRSDMYKDADDITKESKRRLSKSIAKICYCLDDVGLICASEATKICIERGQE 328
Query: 340 ------VLKAQEE------CEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYS 387
V+ A ++ ++ ++S F EE LH+I L + L+
Sbjct: 329 KGWLKEVVDATDQQTDANGSRLFAENSALHMKFFEEALHLIDKRLQQGIDMLLNSESGCV 388
Query: 388 KAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAY 447
+A GYIS KL+EL+Q+F SF S C+IFV+R I A+V++R +KK+ L H TV++
Sbjct: 389 EAAKTGYISPKLYELIQIFHSFSNSRHARCLIFVDRKITARVIDRMIKKIGHLAHFTVSF 448
Query: 448 LTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSS 507
LTG +SVDALTPK+QK+ L+SFR GKVNLLF TDV EEG+HVP CS VIRFDLP+T S
Sbjct: 449 LTGGRSSVDALTPKMQKDTLDSFRSGKVNLLFTTDVAEEGIHVPECSCVIRFDLPRTTRS 508
Query: 508 YIQSRGRARQHNSQFILMLE--------------RSERSVTDTALSRDPEACFLKACTYV 553
Y+QSRGRARQ +SQ+ILM+E RSE S+ A SR+
Sbjct: 509 YVQSRGRARQEDSQYILMIERGNVKQNDLISAIVRSETSMVKIASSRESGNLSPGFVPNE 568
Query: 554 KTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSN 613
+ Y V +TGA VT DSS+++++RYCE LP DK Y+PKP F++ ++ Y C L LP +
Sbjct: 569 EINEYHVGTTGAKVTADSSISIVYRYCEKLPQDKCYSPKPTFEFTHHDDGYVCTLALPPS 628
Query: 614 APFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLP 673
A Q +VGP +RN + +KQLVCL+AC+KLH++GAL+DHL SVE+P I KN+
Sbjct: 629 AVLQILVGPKARNMHKAKQLVCLDACKKLHELGALDDHLCLSVEDPVPE--IVSKNKG-T 685
Query: 674 GAGTTKRKELHGTTPIRALSGRW-GEKCGVILHAYKFNFACSIVTEIYSGFVLLIESELD 732
G GTTKRKELHGTT I A SG W +K + L +YK NF C +IYS FVLLI++ L
Sbjct: 686 GIGTTKRKELHGTTRIHAWSGNWVSKKTALKLQSYKMNFVCDQAGQIYSEFVLLIDATLP 745
Query: 733 NDVGNFELELYLVSKTVKATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKLFVKSK-SS 791
++V E++LYL K VK +VSS G + LDA QM +AK FQ L FNGLFGKLF +SK +
Sbjct: 746 DEVATLEIDLYLHDKMVKTSVSSCGLLELDAQQMEQAKLFQGLLFNGLFGKLFTRSKVPN 805
Query: 792 GSREFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCASVVEFIK----- 846
REF L +E +W+ + +YLLLP N D + INWS I+ A+ V+ ++
Sbjct: 806 APREFILNKEDTFVWNTASVYLLLP---TNPSFDSNVCINWSVIDAAATAVKLMRRIYSE 862
Query: 847 -EKSFLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSVDAKNLKDMVVLAIHTGR 905
++ LG + N G D+IHLAN S A +LKDMVVLA+HTG+
Sbjct: 863 NKRELLGIFDSDQNVG-----------------DLIHLANKSCKANSLKDMVVLAVHTGK 905
Query: 906 IYSIVEIVNNSSAESPFDGNTDDDS---KTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPH 962
IY+ ++I S +S FDG +D +TF YF +KYGIVL HP QPLL LK SHNPH
Sbjct: 906 IYTALDIT-ELSGDSAFDGASDKKECKFRTFAEYFKKKYGIVLRHPSQPLLVLKPSHNPH 964
Query: 963 NLLVN-FNDGGGSGKGSKSGMN-TKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQR 1020
NLL + F D G + +G K VHMPPELL+ +D+P+ +++S YL P++M R
Sbjct: 965 NLLSSKFRDEGNVVENMSNGTPVVNKTSNRVHMPPELLIPLDLPVEILRSFYLFPALMYR 1024
Query: 1021 LESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSC 1080
+ESL LASQLR EI N I S LILEA+TTL C E FSMERLELLGDSVLKYAVSC
Sbjct: 1025 IESLTLASQLRSEIGYSDSN--ISSFLILEAITTLRCSEDFSMERLELLGDSVLKYAVSC 1082
Query: 1081 HLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRP 1140
HLFL +P K EGQLS+ R +CN+TL+KLG +R +QGY+RD+AFDPRRW+APGQLS+RP
Sbjct: 1083 HLFLKFPNKDEGQLSSIRCHMICNATLYKLGIERNVQGYVRDAAFDPRRWLAPGQLSIRP 1142
Query: 1141 VPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGL 1200
PCEC V + EV D D +V+GK CD GHRWM SKTIADC EA+IGAYY GGGL
Sbjct: 1143 SPCECPVKS-EVVTDDIHIIDDKAIVLGKACDKGHRWMCSKTIADCVEAIIGAYYAGGGL 1201
Query: 1201 IAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEA 1260
AA+ ++KWLGI A++E L+ I AS+++Y+P+ N + +E+K+GY F+VK LL EA
Sbjct: 1202 RAAMAVLKWLGIGAEIEEDLIVQAILSASVQTYLPKDNVFEMLEAKLGYSFSVKGLLVEA 1261
Query: 1261 ITHASVQEF---YCYQ-------------------------------------------- 1273
+TH S QE YCY+
Sbjct: 1262 LTHPSQQELGAKYCYERLEFLGDAVLDILLTRYLFNSHKDTNEGELTDLRSASVNNENFA 1321
Query: 1274 ------NLYKHLQHCSTLLLSQITEYVK-----SFPKPGETTDSGPSMKAPKALGDLLES 1322
N + LQH S LLL QITEYV S K +D P K PK LGD++ES
Sbjct: 1322 QVAVKHNFHHFLQHSSGLLLDQITEYVNRLEGSSMDKVELLSDGLP--KGPKVLGDIVES 1379
Query: 1323 IVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELCDSLGYFVKENCTLKG 1382
I GA+L+DTKL+LD VW IF+P+LSPIVTP+ LELPP RELIE C GYFV NC +G
Sbjct: 1380 IAGAILLDTKLDLDVVWGIFEPLLSPIVTPENLELPPYRELIEWCGKHGYFVGINCRDQG 1439
Query: 1383 EMVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEVCEKRISKGASNTGKLGDD 1442
+ V A L +QLK+VLLV +G + RK AK A+S LLK LE I K AS T +
Sbjct: 1440 DTVVATLDVQLKEVLLVRQGFSKKRKDAKAHASSLLLKDLEEKGLIIPKNASKTEQFEKH 1499
Query: 1443 CRQTT--------KEDLPEPPSCKRQKGTEAAIPAGDSCKKAYCMTVGTPVVAPINMKKG 1494
C T D P K + A DS + +G P+ + KG
Sbjct: 1500 CGSTNPFNNLHVDAMDTQTPKPTKEKN-------AADS-RNISDPLLGKPLHVIVKTSKG 1551
Query: 1495 GPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCE----GLEKRTGFS-SFVSKITLHIP 1549
GPR +L++LCK + WPMPT E +E + C +K T + +F S ITLHIP
Sbjct: 1552 GPRIALYELCKKLQWPMPTME-SEKVQPSFSSVCSSPGGSSQKATPQAFAFASTITLHIP 1610
Query: 1550 EFGNVECNGDPRADKKSSFDSAALIMLHELERQGKI 1585
+ GD RADKKSS DSAAL +L+EL+R+G +
Sbjct: 1611 NADVISLTGDGRADKKSSQDSAALFLLYELQRRGTL 1646
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334185717|ref|NP_001154662.2| protein dicer-like 3 [Arabidopsis thaliana] gi|322518661|sp|Q9LXW7.2|DCL3_ARATH RecName: Full=Endoribonuclease Dicer homolog 3; AltName: Full=Dicer-like protein 3; Short=AtDCL3 gi|332644322|gb|AEE77843.1| protein dicer-like 3 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1481 bits (3834), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 816/1653 (49%), Positives = 1054/1653 (63%), Gaps = 162/1653 (9%)
Query: 6 NSLKRSFGEVHSPNPPDMGSSGHDHAVDGPSSSTNSINFIPRIYQLKVFEVAKRRNTIAV 65
NSLKR F E+ D SS +G Y+LKV+EVAK RN IAV
Sbjct: 17 NSLKRKFSEIDGDQNLDSVSSPMMTDSNGS-------------YELKVYEVAKNRNIIAV 63
Query: 66 LETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYY 125
L TG K+ I LIK + S+ K+LIIFLAPTV+LV QQ IR + +VEEY+
Sbjct: 64 LGTGIDKSEITKRLIKAMGS---SDTDKRLIIFLAPTVNLVKQQCCEIRALVNLKVEEYF 120
Query: 126 GAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHP 185
GAKGVD+W SQ W +E +K+DVLVMTPQILLD LR AFL L++VC ++IDECHH TGNHP
Sbjct: 121 GAKGVDKWTSQRWDEEFSKHDVLVMTPQILLDVLRSAFLKLEMVCLLIIDECHHTTGNHP 180
Query: 186 YTKIMKEFYHKSDNKPKVFGMTASPVVRKG-VSSAMDCEGQISELESTLDSQVFTIEDKT 244
Y K+MKEFYH+S +KPK+FG+TAS V+RKG VSS + Q+SELE +DS++F E++
Sbjct: 181 YAKLMKEFYHESTSKPKIFGLTASAVIRKGIVSSPSNYAAQVSELERLMDSKIFNPEERE 240
Query: 245 EMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHK 304
+E F + KE Y+ S C +LK KLE S KFDASL +LQ + + +MD+K +
Sbjct: 241 GVEKFATTVKEGPILYNPSPSCSLELKEKLETSHLKFDASLRRLQELGKDSFLNMDNKFE 300
Query: 305 TLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEV 364
T +K+LS + +IL+CLD LGLICA+ A ++CLEK+ +EE E Y++ S+ CK FLE++
Sbjct: 301 TYQKRLSIDYREILHCLDNLGLICAHLAAEVCLEKISDTKEESETYKECSMVCKEFLEDI 360
Query: 365 LHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERI 424
L IG LP DK +D ++ AV G++S KL EL L SF Q C+I VERI
Sbjct: 361 LSTIGVYLPQDDKSLVDLQQNHLSAVISGHVSPKLKELFHLLDSFRGDKQKQCLILVERI 420
Query: 425 IAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVI 484
I AKV+ERFVKK L +L V YLT + S + K+Q E+ + F+ GKVNLLF TDV+
Sbjct: 421 ITAKVIERFVKKEASLAYLNVLYLTENNPSTNVSAQKMQIEIPDLFQHGKVNLLFITDVV 480
Query: 485 EEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERSERSVTD--------T 536
EEG VP+CS ++ FDLPKT+ SY QS+ A+Q NS+ I+ LER D
Sbjct: 481 EEGFQVPDCSCMVCFDLPKTMCSYSQSQKHAKQSNSKSIMFLERGNPKQRDHLHDLMRRE 540
Query: 537 ALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFK 596
L +DPEA LK+C + V+ G+ V DS++ +
Sbjct: 541 VLIQDPEAPNLKSCPPPVKNGHGVKEIGSMVIPDSNITV--------------------- 579
Query: 597 YKSAEEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSV 656
+EEA A QT+ P SRN+ L C+KL L+++LL S
Sbjct: 580 ---SEEA----------ASTQTMSDPPSRNEQLP-------PCKKLR----LDNNLLQS- 614
Query: 657 EEPSENNLISKKNESLPGAGTTKRKELHGTTPIRALSGRWGEKC-GVILHAYKFNFACSI 715
E SK S AG+ KRKELHGTT ALSG WGE G AYKF+F C+I
Sbjct: 615 -NGKEKVASSKSKSSSSAAGSKKRKELHGTTCANALSGTWGENIDGATFQAYKFDFCCNI 673
Query: 716 VTEIYSGFVLLIESELDNDVGNFELELYLVSKTVKATVSSSGQVHLDADQMSKAKCFQEL 775
E+YS F LL+ES L DVG E++LYLV K VKA+VS GQ+ L +++ KAK FQ+
Sbjct: 674 SGEVYSSFSLLLESTLAEDVGKVEMDLYLVRKLVKASVSPCGQIRLSQEELVKAKYFQQF 733
Query: 776 FFNGLFGKLFVKSKSSGS-REFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSG 834
FFNG+FGKLFV SKS G+ REF L+ +T+SLW P++M+LLLP+E N S I+WS
Sbjct: 734 FFNGMFGKLFVGSKSQGTKREFLLQTDTSSLWHPAFMFLLLPVE-TNDLA-SSATIDWSA 791
Query: 835 INPCASVVEFIKEKSFLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSVDAKNLK 894
IN CAS+VEF+K+ S L + N N+S + ++IH AN S D +L+
Sbjct: 792 INSCASIVEFLKKNSLLDLRDSDGNQCNTSSGQEVLLDDKMEETNLIHFANASSDKNSLE 851
Query: 895 DMVVLAIHTGRIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLR 954
++VV+AIHTGRIYSIVE V++SSA SPF+ + T+ YF++KYGIVL HP QPL++
Sbjct: 852 ELVVIAIHTGRIYSIVEAVSDSSAMSPFEVDASSGYATYAEYFNKKYGIVLAHPNQPLMK 911
Query: 955 LKQSHNPHNLLVNFNDGGGSGKGSKSG-MNTKKPQMHVHMPPELLVRVDVPISVVKSLYL 1013
LKQSH+ HNLLV+FN+ K+G + +KP +H H+PPELL R+DVP +V+KS+YL
Sbjct: 912 LKQSHHAHNLLVDFNEEMVVKTEPKAGNVRKRKPNIHAHLPPELLARIDVPRAVLKSIYL 971
Query: 1014 LPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSV 1073
LPSVM RLESLMLASQLREEI+C NF I S+ ILEA+TTL C ESFSMERLELLGDSV
Sbjct: 972 LPSVMHRLESLMLASQLREEIDCSIDNFSISSTSILEAVTTLTCPESFSMERLELLGDSV 1031
Query: 1074 LKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAP 1133
LKY SCHLFL YP K EGQLS +R + NS LH+L T RKLQGYIR+ AF+PRRW AP
Sbjct: 1032 LKYVASCHLFLKYPDKDEGQLSRQRQSIISNSNLHRLTTSRKLQGYIRNGAFEPRRWTAP 1091
Query: 1134 GQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGA 1193
GQ SL PVPC+CG+DT EVPLD KFFT++ + +GK CDMGHRW+ SK+++DCAEALIGA
Sbjct: 1092 GQFSLFPVPCKCGIDTREVPLDPKFFTENMTIKIGKSCDMGHRWVVSKSVSDCAEALIGA 1151
Query: 1194 YYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTV 1253
YYV GGL A+L+MMKWLGID D + +LV + I R SLR Y+P+ +E+ ++E KI +EF+
Sbjct: 1152 YYVSGGLSASLHMMKWLGIDVDFDPNLVVEAINRVSLRCYIPKEDELIELERKIQHEFSA 1211
Query: 1254 KFLLQEAITHASVQEFYCYQ---------------------------------------- 1273
KFLL+EAITH+S++E Y Y+
Sbjct: 1212 KFLLKEAITHSSLRESYSYERLEFLGDSVLDFLITRHLFNTYEQTGPGEMTDLRSACVNN 1271
Query: 1274 ----------NLYKHLQHCSTLLLSQITEYVKSFPKPGETTDSGPSMKAPKALGDLLESI 1323
NL+ HLQ C+T+L +QI +Y+ SF KP ET S PS++ PKALGD++ESI
Sbjct: 1272 ENFAQVAVKNNLHTHLQRCATVLETQINDYLMSFQKPDETGRSIPSIQGPKALGDVVESI 1331
Query: 1324 VGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELCDSLGYFVKENCTLKGE 1383
GA+LIDT+L+LD+VWR+F+P+LSP+VTPDKL+LPP REL ELCDSLGYF + C+ G
Sbjct: 1332 AGALLIDTRLDLDQVWRVFEPLLSPLVTPDKLQLPPYRELNELCDSLGYFFRVKCSNDGV 1391
Query: 1384 MVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEVCEKRISKGASNTGKLGDD- 1442
A ++LQL DVLL G+G E++ K A GKAAS LL +LE ++ IS+ S LGD+
Sbjct: 1392 KAQATIQLQLDDVLLTGDGSEQTNKLALGKAASHLLTQLE--KRNISRKTS----LGDNQ 1445
Query: 1443 --------CRQTTKEDLPEPPSCKRQKGTEAAIPAGDSCKKAYCMTVGTPVVAPINMKKG 1494
C + +E L + + ++ P + PINMKKG
Sbjct: 1446 SSMDVNLACNHSDRETL--------------------TSETTEIQSIVIPFIGPINMKKG 1485
Query: 1495 GPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNV 1554
GPR +L + CK LWPMPTF+T+E KSRT F +G EKRT FSSF S ITL IP V
Sbjct: 1486 GPRGTLHEFCKKHLWPMPTFDTSEEKSRTPFEFIDGGEKRTSFSSFTSTITLRIPNREAV 1545
Query: 1555 ECNGDPRADKKSSFDSAALIMLHELERQGKIII 1587
G+ R DKKSSFDSA + +L+ELER+ +II
Sbjct: 1546 MYAGEARPDKKSSFDSAVVELLYELERRKIVII 1578
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1590 | ||||||
| TAIR|locus:2149259 | 1702 | DCL4 "dicer-like 4" [Arabidops | 0.552 | 0.516 | 0.307 | 7.5e-162 | |
| UNIPROTKB|Q8LMR2 | 1883 | DCL1 "Endoribonuclease Dicer h | 0.239 | 0.202 | 0.362 | 4.3e-151 | |
| UNIPROTKB|A7LFZ6 | 1657 | DCL4 "Endoribonuclease Dicer h | 0.379 | 0.364 | 0.293 | 1.6e-150 | |
| TAIR|locus:2097705 | 1388 | DCL2 "dicer-like 2" [Arabidops | 0.445 | 0.510 | 0.340 | 1.9e-138 | |
| ZFIN|ZDB-GENE-030131-3445 | 1865 | dicer1 "Dicer1, Dcr-1 homolog | 0.194 | 0.166 | 0.314 | 4.7e-96 | |
| UNIPROTKB|F1NJX0 | 1921 | DICER1 "Endoribonuclease Dicer | 0.219 | 0.181 | 0.294 | 4.9e-94 | |
| UNIPROTKB|Q25BN1 | 1921 | DICER1 "Endoribonuclease Dicer | 0.219 | 0.181 | 0.294 | 4.9e-94 | |
| UNIPROTKB|Q9UPY3 | 1922 | DICER1 "Endoribonuclease Dicer | 0.194 | 0.160 | 0.294 | 1.9e-93 | |
| MGI|MGI:2177178 | 1916 | Dicer1 "dicer 1, ribonuclease | 0.194 | 0.161 | 0.300 | 4.1e-93 | |
| UNIPROTKB|E2RIN4 | 1923 | DICER1 "Uncharacterized protei | 0.194 | 0.160 | 0.306 | 4.8e-93 |
| TAIR|locus:2149259 DCL4 "dicer-like 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1021 (364.5 bits), Expect = 7.5e-162, Sum P(4) = 7.5e-162
Identities = 292/949 (30%), Positives = 474/949 (49%)
Query: 45 IPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVH 104
I R YQ+++ + A N I L TG GKT IAVMLI ++ + S K + IFLAPTV
Sbjct: 123 IARRYQVELCKKATEENVIVYLGTGCGKTHIAVMLIYELGHLVLSPK-KSVCIFLAPTVA 181
Query: 105 LVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL 164
LV QQ VI +F+V + G K + + S+ W++EI N+VLVMTPQILL L+ F+
Sbjct: 182 LVEQQAKVIADSVNFKVAIHCGGKRIVKSHSE-WEREIAANEVLVMTPQILLHNLQHCFI 240
Query: 165 SLDIVCFIVIDECHHAT--GNHPYTKIMKEFYHKSDN--KPKVFGMTASPVVRKGVSSAM 220
++ + ++ DECHHA NHPY +IMK FY KS++ +P++FGMTASPVV KG +
Sbjct: 241 KMECISLLIFDECHHAQQQSNHPYAEIMKVFY-KSESLQRPRIFGMTASPVVGKGSFQSE 299
Query: 221 DCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSK 280
+ I+ LE+ L+++V+++E +++ FV S +Y + SD S +
Sbjct: 300 NLSKSINSLENLLNAKVYSVESNVQLDGFVSSPLVKVYYYRSAL---SDASQ----STIR 352
Query: 281 FDASLSKLQGSQLNCYKDMDDKHKT-----LRKQLSDYHAKILYCLDELGLICAYEAVKI 335
++ L ++ L K + D H+T +++ L H ++Y L LGL A +A KI
Sbjct: 353 YENMLEDIKQRCLASLKLLIDTHQTQTLLSMKRLLKRSHDNLIYTLLNLGLWGAIQAAKI 412
Query: 336 CLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYI 395
L Q+E S C +L + S + D+ D + A+
Sbjct: 413 QLNSDHNVQDEPVGKNPKSKICDTYLSMAAEALSSGVA-KDENASDL-LSLA-ALKEPLF 469
Query: 396 STKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSV 455
S KL +L+++ F + CIIFV RI+ A+ + + + L +L G ++ +
Sbjct: 470 SRKLVQLIKILSVFRLEPHMKCIIFVNRIVTARTLSCILNNLELLRSWKSDFLVGLSSGL 529
Query: 456 DALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRA 515
+++ + + +L+ F+ ++NLL AT V EEG+ + C VIR+DLP+TV+S+IQSRGRA
Sbjct: 530 KSMSRRSMETILKRFQSKELNLLVATKVGEEGLDIQTCCLVIRYDLPETVTSFIQSRGRA 589
Query: 516 RQHNSQFILMLERSERSVTDTA----LSRDP---EACFLKA---CTYVKTKSYIVESTGA 565
R S++ +++ D ++ D E + + C + + Y V TGA
Sbjct: 590 RMPQSEYAFLVDSGNEKEMDLIENFKVNEDRMNLEITYRSSEETCPRLDEELYKVHETGA 649
Query: 566 SVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEE--AYECELTLPSNAPFQTIVGPT 623
++ SS++L+++YC LP D+++ PKP F++K +E C +TLP+NAP I
Sbjct: 650 CISGGSSISLLYKYCSRLPHDEFFQPKPEFQFKPVDEFGGTICRITLPANAPISEIESSL 709
Query: 624 SRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNE--SLPGAGTTKRK 681
+ +K+ CL+A +LH +G LND LLP ++ E+ L + + ++ G G ++
Sbjct: 710 LPSTEAAKKDACLKAVHELHNLGVLNDFLLPDSKDEIEDELSDDEFDFDNIKGEGCSRGD 769
Query: 682 ELHGTTPIRALSGRWGEKCGVI-LHAYKFNFACSIVTEIYSGFVLLIESELDNDVGNFEL 740
P+ +W + LH+Y F IY F ++S L + ++
Sbjct: 770 LYEMRVPV-LFKQKWDPSTSCVNLHSYYIMFVPHPADRIYKKFGFFMKSPLPVEAETMDI 828
Query: 741 ELYLXXXXXXXXXXX-XGQVHLDADQMSKAKCFQELFFNGLFGKLFVKSKSSGSREFF-L 798
+L+L G D D++ A+ FQE+ LF + +F L
Sbjct: 829 DLHLAHQRSVSVKIFPSGVTEFDNDEIRLAELFQEIALKVLF------ERGELIPDFVPL 882
Query: 799 KRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCASVVEFIKEKSFLGAAQCNN 858
+ + +S S S YLLLPL + + G+ ++W I C S F K S L
Sbjct: 883 ELQDSSRTSKSTFYLLLPLCLHD--GESVISVDWVTIRNCLSSPIF-KTPSVLVE----- 934
Query: 859 NGGNSSPCRTSPCKTGCHGKDVIHLANGSVDAKNLKDMVVLAIHTGRIYSIVEIVNNSSA 918
+ P P +G H K LANG + ++K+ +V ++ + Y + +I + +
Sbjct: 935 ---DIFP----P--SGSHLK----LANGCWNIDDVKNSLVFTTYSKQFYFVADICHGRNG 981
Query: 919 ESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVN 967
SP + +K+ V + YG+ L HP QPLLR+K + NLL N
Sbjct: 982 FSPVK---ESSTKSHVESIYKLYGVELKHPAQPLLRVKPLCHVRNLLHN 1027
|
|
| UNIPROTKB|Q8LMR2 DCL1 "Endoribonuclease Dicer homolog 1" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 551 (199.0 bits), Expect = 4.3e-151, Sum P(7) = 4.3e-151
Identities = 151/417 (36%), Positives = 222/417 (53%)
Query: 881 IHLANGSVDAKNLKDMVVLAIHTGRIYSIVEIVNNSSAESPF---DGNTDD-DSKTFVNY 936
+ +A+ +AK+L MVV A H+G+ + + I N +AE+ F +G + ++ +Y
Sbjct: 1173 LFMADSCWNAKDLAGMVVTAAHSGKRFYVDCICYNMNAENSFPRKEGYLGPLEYSSYADY 1232
Query: 937 FSEKYGIVLIHPGQPLLRLKQSHNPHNLLV-NFNDXXXXXXXXXXXMNTKKPQMHVHMPP 995
+ +KYG+ LI+ QPL+R + NLL F N K +V++PP
Sbjct: 1233 YKQKYGVELIYRKQPLIRARGVSYCKNLLSPRFEHSDAREGDFSE--NLDKTY-YVYLPP 1289
Query: 996 ELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTL 1055
EL + +P S+V+ LPS+M+R+ES++LA QL++ I+ + +P++ ILEALT
Sbjct: 1290 ELCLVHPLPGSLVRGAQRLPSIMRRVESMLLAVQLKDIID-----YPVPATKILEALTAA 1344
Query: 1056 GCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRK 1115
C E+ ER ELLGD+ LK+ VS LFL YP+KHEGQL+ R V N L++ ++
Sbjct: 1345 SCQETLCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQYALNKT 1404
Query: 1116 LQGYIRDSAFDPRRWVAPGQLSL--------RP-------VPCECGVDTLEVPLDGKFFT 1160
LQ YI+ F P RW APG L + P CE ++ + D
Sbjct: 1405 LQSYIQADRFAPSRWAAPGVLPVFDEESREYEPSIFDEESTGCELQKESYDDYADN--MQ 1462
Query: 1161 QDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSL 1220
+D ++ C +R + SKT+AD EALIG YYV GG IAA ++MKW+GI A+L+
Sbjct: 1463 EDGEIEGDSSC---YRVLSSKTLADVVEALIGVYYVAGGKIAANHLMKWIGIHAELDPEE 1519
Query: 1221 VDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQE--FYCYQNL 1275
+ S + IN ++ +G EF K LL EAITHAS CYQ L
Sbjct: 1520 IPPPKPYDIPESIMRSIN-FDTLKGVLGIEFQNKGLLVEAITHASRPSSGVSCYQRL 1575
|
|
| UNIPROTKB|A7LFZ6 DCL4 "Endoribonuclease Dicer homolog 4" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 570 (205.7 bits), Expect = 1.6e-150, Sum P(5) = 1.6e-150
Identities = 189/645 (29%), Positives = 299/645 (46%)
Query: 214 KGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGK 273
KG S+ ++ I+ LE L ++V ++ D E+E V S FY S+L
Sbjct: 226 KGGSNKLNYTKCINSLEELLHAKVCSV-DNEELESVVASPDMEVYFYGPVNH--SNLT-- 280
Query: 274 LEVSWSKFDASLSKLQGSQL--NCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYE 331
+ + D SL KLQ ++ D D K L K L H I++CL ELG A +
Sbjct: 281 -TICIKELD-SL-KLQSERMLRASLCDFKDSQKKL-KSLWRLHENIIFCLQELGSFGALQ 336
Query: 332 AVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFG-FDYSKAV 390
A + L + E+ S F L+ S L G FD K +
Sbjct: 337 AARTFLSFDGDKLDRREVDLNGSTSS--FAHHYLNGATSILSRNKTDGSHAGSFDLEK-L 393
Query: 391 DLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTG 450
+ + S K L+ + +G + CI+FV+RI A+ + ++ + L +L G
Sbjct: 394 EEPFFSNKFSVLINVLSRYGLQENMKCIVFVKRITVARAISNILQNLKCLEFWKCEFLVG 453
Query: 451 STTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQ 510
+ ++ +++ F G+VNLL AT V EEG+ + C V+RFDLP+TV+S+IQ
Sbjct: 454 CHSGSKNMSRNKMDAIVQRFSSGEVNLLVATSVGEEGLDIQTCCLVVRFDLPETVASFIQ 513
Query: 511 SRGRARQHNSQFILMLERSERS---------VTDTALSRDPEACFLKAC-TYVKTKSYIV 560
SRGRAR S+++++LER +S ++ ++ + ++ ++ Y V
Sbjct: 514 SRGRARMTKSKYVVLLERENQSHEKLLNGYIAGESIMNEEIDSRTSNDMFDCLEENIYQV 573
Query: 561 ESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQTIV 620
++TGAS++T SV+L+H YC+ LP D ++TP P+F Y E C L LP NA F+
Sbjct: 574 DNTGASISTACSVSLLHCYCDNLPRDMFFTPSPVFFYIDGIEGIICRLILPPNAAFRQAD 633
Query: 621 GPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLPGA--GTT 678
G +K+ +K+ CL+AC KLH++GAL D LLP S N +S N S +
Sbjct: 634 GQPCLSKDEAKRDACLKACVKLHKLGALTDFLLPG--PGSRKNKVSVTNNSSNNKVEDDS 691
Query: 679 KRKELHGTTPIRALSGRWGEKCGVI--LHAYKFNFACSIVTEIYSGFVLLIESELDNDVG 736
R+ELH I A+ G K + LH Y F Y F L + + L +
Sbjct: 692 LREELHEML-IPAVLKPSGLKLDSLSNLHFYYVKFIPIPEDRRYQMFGLFVINPLPVEAE 750
Query: 737 NFELELYLXXXXXXXXXXXX-GQVHLDADQMSKAKCFQELFFNGLFGKLFVKSKSSGSRE 795
+++L+L G++ + ++M A FQE+ K+ + S
Sbjct: 751 TLQVDLHLARGRIVKAGIKHLGKIAFEKEKMMLAHKFQEMCL-----KILLDRSEFTSPH 805
Query: 796 FFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCAS 840
L + +L S YLLLP++ +GD + I+W + C S
Sbjct: 806 VKLGNDV-TLEINSTFYLLLPIK-QKCYGD-RFMIDWPAVERCLS 847
|
|
| TAIR|locus:2097705 DCL2 "dicer-like 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 972 (347.2 bits), Expect = 1.9e-138, Sum P(3) = 1.9e-138
Identities = 263/773 (34%), Positives = 412/773 (53%)
Query: 38 STNSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLII 97
S + ++F R YQ++ E A ++NTI LETG+GKT+IA+ML++ A + +
Sbjct: 17 SASPLHFA-RSYQVEALEKAIKQNTIVFLETGSGKTLIAIMLLRSYAYLFRKPS-PCFCV 74
Query: 98 FLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLD 157
FL P V LV QQ + +++HTD +V Y+G GVD WDS W++E++K +VLVMTP ILLD
Sbjct: 75 FLVPQVVLVTQQAEALKMHTDLKVGMYWGDMGVDFWDSSTWKQEVDKYEVLVMTPAILLD 134
Query: 158 ALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHK-----SDNKPKVFGMTASPVV 212
ALR +FLSL ++ +++DECHHA G HPY IM+EFYHK + N P++FGMTAS V
Sbjct: 135 ALRHSFLSLSMIKVLIVDECHHAGGKHPYACIMREFYHKELNSGTSNVPRIFGMTASLVK 194
Query: 213 RKGVSSAMDCEGQ-ISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCG---S 268
KG + +D + I ELE+ ++S+V+T E+++ + FVP + S ++Y K +
Sbjct: 195 TKGEN--LDSYWKKIHELETLMNSKVYTCENESVLAGFVPFSTPSFKYYQHIKIPSPKRA 252
Query: 269 DLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLIC 328
L KLE K SL L LN +D ++ K+L + + YCLD+LG++
Sbjct: 253 SLVEKLERLTIKHRLSLGTLD---LNS-STVD----SVEKRLLRISSTLTYCLDDLGILL 304
Query: 329 AYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSK 388
A +A + + +Q + ++ + ++ +++ LA+ + G ++S
Sbjct: 305 AQKAA----QSLSASQNDSFLWGELNMFSVALVKKFCSDASQEF-LAE---IPQGLNWSV 356
Query: 389 A-----VDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKV-PFLTH 442
A + G ++ K L++ L + + CIIFV+R+I A V+E + ++ P +
Sbjct: 357 ANINGNAEAGLLTLKTVCLIETLLGYSSLENIRCIIFVDRVITAIVLESLLAEILPNCNN 416
Query: 443 LTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLP 502
Y+ G+ + + T K Q E++E FR G VN++ AT ++EEG+ V +C+ VIRFD
Sbjct: 417 WKTKYVAGNNSGLQNQTRKKQNEIVEDFRRGLVNIIVATSILEEGLDVQSCNLVIRFDPA 476
Query: 503 KTVSSYIQSRGRARQHNSQFILMLERSERSVTDTAL-------SRDPEACF---LKACTY 552
+ S+IQSRGRAR NS +++M+E + +T + L R E L C
Sbjct: 477 SNICSFIQSRGRARMQNSDYLMMVESGDL-LTQSRLMKYLSGGKRMREESLDHSLVPCPP 535
Query: 553 VKTKS----YIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECEL 608
+ S + VESTGA+VT SSV+LI+ YC LPSD+Y+ P P F + + C L
Sbjct: 536 LPDDSDEPLFRVESTGATVTLSSSVSLIYHYCSRLPSDEYFKPAPRFDVNKDQGS--CTL 593
Query: 609 TLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKK 668
LP + P + + + NK L KQ VCL+AC +LH+VGAL+DHL+P + +E +S+K
Sbjct: 594 YLPKSCPVKEVKAEAN-NKVL-KQAVCLKACIQLHKVGALSDHLVPDMVV-AET--VSQK 648
Query: 669 NESLPGAGTTKRKELHGTTPIRALSGRWGEKCGVILHAYKFNFACSIVTEIYSGFVLL-I 727
E + E P +S ++ + H Y + + VLL
Sbjct: 649 LEKIQ-----YNTEQPCYFPPELVS-QFSAQPETTYHFYLIRMKPNSPRNFHLNDVLLGT 702
Query: 728 ESELDNDVGNFELELYLXXXXXXXXXXXXGQVHLDADQMSKAKCFQELFFNGL 780
L++D+GN L G HL +++ + FQ F L
Sbjct: 703 RVVLEDDIGNTSFRLEDHRGTIAVTLSYVGAFHLTQEEVLFCRRFQITLFRVL 755
|
|
| ZFIN|ZDB-GENE-030131-3445 dicer1 "Dicer1, Dcr-1 homolog (Drosophila)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 374 (136.7 bits), Expect = 4.7e-96, Sum P(8) = 4.7e-96
Identities = 103/328 (31%), Positives = 163/328 (49%)
Query: 44 FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTV 103
+ PR YQ+++ E A NTI L TG+GKT IAV+LIK+++ I+ K+ + FL
Sbjct: 32 YTPRKYQVELLEAALEHNTIVCLNTGSGKTFIAVLLIKELSHQIRGENGKRTV-FLVNAA 90
Query: 104 HLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAF 163
V QQ +R H+D +V +Y ++ + W + W +E+ +N VLVMT I L L+
Sbjct: 91 SSVAQQASTVRTHSDLQVGDYM-SEDMTSWPEEMWNREMIENQVLVMTCHIFLHVLKNGV 149
Query: 164 LSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCE 223
L L + +V DECH A HPY +IMK + P++ G+TAS + G D E
Sbjct: 150 LPLSKINLLVFDECHLAITGHPYREIMK-ICEGCPSCPRILGLTAS--ILNGKCDPCDLE 206
Query: 224 GQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDA 283
+I LE L S T D ++ + +E D ++ D G E ++ D
Sbjct: 207 EKIQNLEKILQSNAETATDLVVLDRYASQPREEV--LDCGQY--QDQSGLSERLLNELDE 262
Query: 284 SLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKIC---LEKV 340
+L+ L L+ +++ D ++ L+D A L LG CA +A I L+K
Sbjct: 263 ALNFLNDCNLSVHREDRDPTFISKQVLNDCRA----VLTVLGPWCADKAAGIMVRELQKY 318
Query: 341 LKAQEECEIYRQSSLQCKYFLEEVLHVI 368
+K ++E E+ R+ L L ++ H +
Sbjct: 319 IKHEQE-ELNRKFLLFTDTILRKI-HAL 344
|
|
| UNIPROTKB|F1NJX0 DICER1 "Endoribonuclease Dicer" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 371 (135.7 bits), Expect = 4.9e-94, Sum P(8) = 4.9e-94
Identities = 111/377 (29%), Positives = 182/377 (48%)
Query: 1 MHSP-LNSLKRSFGEVHSPNPPDMGSSGHDHAVDGPSSSTNSINFIPRIYQLKVFEVAKR 59
M SP L SL + ++ +P MG + + + + PR YQ+++ E A
Sbjct: 1 MKSPALQSLSMAGLQLMTPASSPMGPF---FGLPWQQEAIHDNIYTPRKYQVELLEAALD 57
Query: 60 RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFK--KLIIFLAPTVHLVHQQYDVIRVHT 117
NTI L TG+GKT IAV+L K+++ I+ + K K +FL + + V QQ +R H+
Sbjct: 58 HNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFNKNGKRTVFLVNSANQVAQQVSAVRTHS 117
Query: 118 DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDEC 177
D +V EY + + W + W +E +K+ VLVMT + L LR +LSL + +V DEC
Sbjct: 118 DLKVGEYSSLEVTESWTKEKWSQEFSKHQVLVMTCHVALTVLRNEYLSLSNINLLVFDEC 177
Query: 178 HHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQV 237
H A +HPY +IMK + P++ G+TAS + G + E +I +LE L S
Sbjct: 178 HLAIQDHPYREIMK-ICEDYPSCPRILGLTAS--ILNGKCDPAELEEKIKKLEKILKSNA 234
Query: 238 FTIEDKTEMEVFVPSAKESCRFYDQSKFCG--SDLKGKLEVSWSKFDASLSKLQGSQLNC 295
E T++ V + C CG +D G + D +L L ++
Sbjct: 235 ---ETATDLVVLDRYTSQPCEIVVD---CGPYTDKSGLYGRLLRELDEALHFLNDCNISV 288
Query: 296 YKDMDDKHKTLRKQLSDYHAKIL----YCLDELGLICAYEAVKICLEKVLKAQEECEIYR 351
+ D ++ LSD A ++ +C D++ + E L+K +K ++E E++R
Sbjct: 289 HSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRE-----LQKYIKHEQE-ELHR 342
Query: 352 QSSLQCKYFLEEVLHVI 368
+ L FL ++ H +
Sbjct: 343 KFLLFTDTFLRKI-HAL 358
|
|
| UNIPROTKB|Q25BN1 DICER1 "Endoribonuclease Dicer" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 371 (135.7 bits), Expect = 4.9e-94, Sum P(8) = 4.9e-94
Identities = 111/377 (29%), Positives = 182/377 (48%)
Query: 1 MHSP-LNSLKRSFGEVHSPNPPDMGSSGHDHAVDGPSSSTNSINFIPRIYQLKVFEVAKR 59
M SP L SL + ++ +P MG + + + + PR YQ+++ E A
Sbjct: 1 MKSPALQSLSMAGLQLMTPASSPMGPF---FGLPWQQEAIHDNIYTPRKYQVELLEAALD 57
Query: 60 RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFK--KLIIFLAPTVHLVHQQYDVIRVHT 117
NTI L TG+GKT IAV+L K+++ I+ + K K +FL + + V QQ +R H+
Sbjct: 58 HNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFNKNGKRTVFLVNSANQVAQQVSAVRTHS 117
Query: 118 DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDEC 177
D +V EY + + W + W +E +K+ VLVMT + L LR +LSL + +V DEC
Sbjct: 118 DLKVGEYSSLEVTESWTKEKWSQEFSKHQVLVMTCHVALTVLRNEYLSLSNINLLVFDEC 177
Query: 178 HHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQV 237
H A +HPY +IMK + P++ G+TAS + G + E +I +LE L S
Sbjct: 178 HLAIQDHPYREIMK-ICEDYPSCPRILGLTAS--ILNGKCDPAELEEKIKKLEKILKSNA 234
Query: 238 FTIEDKTEMEVFVPSAKESCRFYDQSKFCG--SDLKGKLEVSWSKFDASLSKLQGSQLNC 295
E T++ V + C CG +D G + D +L L ++
Sbjct: 235 ---ETATDLVVLDRYTSQPCEIVVD---CGPYTDKSGLYGRLLRELDEALHFLNDCNISV 288
Query: 296 YKDMDDKHKTLRKQLSDYHAKIL----YCLDELGLICAYEAVKICLEKVLKAQEECEIYR 351
+ D ++ LSD A ++ +C D++ + E L+K +K ++E E++R
Sbjct: 289 HSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRE-----LQKYIKHEQE-ELHR 342
Query: 352 QSSLQCKYFLEEVLHVI 368
+ L FL ++ H +
Sbjct: 343 KFLLFTDTFLRKI-HAL 358
|
|
| UNIPROTKB|Q9UPY3 DICER1 "Endoribonuclease Dicer" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 360 (131.8 bits), Expect = 1.9e-93, Sum P(8) = 1.9e-93
Identities = 98/333 (29%), Positives = 167/333 (50%)
Query: 44 FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFK--KLIIFLAP 101
+ PR YQ+++ E A NTI L TG+GKT IAV+L K+++ I+ + + K +FL
Sbjct: 42 YTPRKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFSRNGKRTVFLVN 101
Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
+ + V QQ +R H+D +V EY + W + W +E K+ VL+MT + L+ L+
Sbjct: 102 SANQVAQQVSAVRTHSDLKVGEYSNLEVNASWTKERWNQEFTKHQVLIMTCYVALNVLKN 161
Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMD 221
+LSL + +V DECH A +HPY +IMK + P++ G+TAS + G +
Sbjct: 162 GYLSLSDINLLVFDECHLAILDHPYREIMK-LCENCPSCPRILGLTAS--ILNGKCDPEE 218
Query: 222 CEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCG--SDLKGKLEVSWS 279
E +I +LE L S E T++ V + C CG +D G E
Sbjct: 219 LEEKIQKLEKILKSNA---ETATDLVVLDRYTSQPCEIVVD---CGPFTDRSGLYERLLM 272
Query: 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKIL----YCLDELGLICAYEAVKI 335
+ + +L+ + ++ + D ++ LSD A ++ +C D++ + E
Sbjct: 273 ELEEALNFINDCNISVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRE---- 328
Query: 336 CLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVI 368
L+K +K ++E E++R+ L FL ++ H +
Sbjct: 329 -LQKYIKHEQE-ELHRKFLLFTDTFLRKI-HAL 358
|
|
| MGI|MGI:2177178 Dicer1 "dicer 1, ribonuclease type III" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 357 (130.7 bits), Expect = 4.1e-93, Sum P(9) = 4.1e-93
Identities = 100/333 (30%), Positives = 163/333 (48%)
Query: 44 FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKS--NGFKKLIIFLAP 101
+ PR YQ+++ E A NTI L TG+GKT IAV+L K++A I+ N K +FL
Sbjct: 42 YTPRKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELAHQIRGDLNPHAKRTVFLVN 101
Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
+ + V QQ +R H+D +V EY + W + W +E K+ VL+MT + L L+
Sbjct: 102 SANQVAQQVSAVRTHSDLKVGEYSDLEVNASWTKERWSQEFTKHQVLIMTCYVALTVLKN 161
Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMD 221
+LSL + +V DECH A +HPY +IMK + P++ G+TAS + G +
Sbjct: 162 GYLSLSDINLLVFDECHLAILDHPYREIMK-LCESCPSCPRILGLTAS--ILNGKCDPEE 218
Query: 222 CEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCG--SDLKGKLEVSWS 279
E +I +LE L S E T++ V + C CG +D G E
Sbjct: 219 LEEKIQKLERILRSDA---ETATDLVVLDRYTSQPCEIVVD---CGPFTDRSGLYERLLM 272
Query: 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKIL----YCLDELGLICAYEAVKI 335
+ +A+L + + + D ++ LSD A ++ +C D++ + E
Sbjct: 273 ELEAALDFINDCNVAVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRE---- 328
Query: 336 CLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVI 368
L+K +K ++E E++R+ L L ++ H +
Sbjct: 329 -LQKYIKHEQE-ELHRKFLLFTDTLLRKI-HAL 358
|
|
| UNIPROTKB|E2RIN4 DICER1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 362 (132.5 bits), Expect = 4.8e-93, Sum P(8) = 4.8e-93
Identities = 102/333 (30%), Positives = 168/333 (50%)
Query: 44 FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKS--NGFKKLIIFLAP 101
+ PR YQ+++ E A NTI L TG+GKT IAV+L K+++ I+ N K +FL
Sbjct: 42 YTPRKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFNRNGKRTVFLVN 101
Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
+ + V QQ +R H+D +V EY + W + W +E K+ VLVMT + L+ L+
Sbjct: 102 SANQVAQQVSAVRTHSDLKVGEYSNLEVNASWTKEKWNQEFTKHQVLVMTCYVALNVLKN 161
Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMD 221
+LSL + +V DECH A +HPY +IMK + P++ G+TAS + G +
Sbjct: 162 GYLSLSDINLLVFDECHLAILDHPYREIMK-LCENCPSCPRILGLTAS--ILNGKCDPEE 218
Query: 222 CEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFY-DQSKFCG-SDLKGKLEVSWS 279
E +I +LE L S E T++ V + C D F S L G+L V
Sbjct: 219 LEEKIQKLEKILKSNA---ETATDLVVLDRYTSQPCEIVVDCGPFTDRSGLYGRLLV--- 272
Query: 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKIL----YCLDELGLICAYEAVKI 335
+ + +L+ + ++ + D ++ LSD A ++ +C D++ + E
Sbjct: 273 ELEEALNFINDCNISVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRE---- 328
Query: 336 CLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVI 368
L+K +K ++E E++R+ L FL ++ H +
Sbjct: 329 -LQKYIKHEQE-ELHRKFLLFTDTFLRKI-HAL 358
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LXW7 | DCL3_ARATH | 3, ., 1, ., 2, 6, ., - | 0.4936 | 0.9377 | 0.9436 | yes | no |
| Q5N870 | DCL3A_ORYSJ | 3, ., 1, ., 2, 6, ., - | 0.4933 | 0.9465 | 0.9115 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.6.4 | LOW CONFIDENCE prediction! |
| 3rd Layer | 3.1.26 | 0.691 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1590 | |||
| COG1111 | 542 | COG1111, MPH1, ERCC4-like helicases [DNA replicati | 9e-44 | |
| cd02844 | 135 | cd02844, PAZ_CAF_like, PAZ domain, CAF_like subfam | 2e-37 | |
| cd00593 | 133 | cd00593, RIBOc, RIBOc | 1e-31 | |
| pfam03368 | 91 | pfam03368, dsRNA_bind, Double stranded RNA binding | 6e-30 | |
| PRK13766 | 773 | PRK13766, PRK13766, Hef nuclease; Provisional | 1e-25 | |
| smart00535 | 129 | smart00535, RIBOc, Ribonuclease III family | 3e-23 | |
| smart00487 | 201 | smart00487, DEXDc, DEAD-like helicases superfamily | 4e-23 | |
| cd00046 | 144 | cd00046, DEXDc, DEAD-like helicases superfamily | 3e-20 | |
| pfam00270 | 169 | pfam00270, DEAD, DEAD/DEAH box helicase | 1e-18 | |
| pfam00271 | 78 | pfam00271, Helicase_C, Helicase conserved C-termin | 2e-18 | |
| smart00490 | 82 | smart00490, HELICc, helicase superfamily c-termina | 5e-17 | |
| pfam00636 | 91 | pfam00636, Ribonuclease_3, Ribonuclease III domain | 2e-16 | |
| cd00079 | 131 | cd00079, HELICc, Helicase superfamily c-terminal d | 9e-16 | |
| COG1061 | 442 | COG1061, SSL2, DNA or RNA helicases of superfamily | 2e-14 | |
| smart00949 | 138 | smart00949, PAZ, This domain is named PAZ after th | 4e-14 | |
| COG0571 | 235 | COG0571, Rnc, dsRNA-specific ribonuclease [Transcr | 2e-13 | |
| PRK00102 | 229 | PRK00102, rnc, ribonuclease III; Reviewed | 2e-13 | |
| COG0571 | 235 | COG0571, Rnc, dsRNA-specific ribonuclease [Transcr | 6e-13 | |
| COG0513 | 513 | COG0513, SrmB, Superfamily II DNA and RNA helicase | 7e-13 | |
| TIGR02191 | 220 | TIGR02191, RNaseIII, ribonuclease III, bacterial | 1e-12 | |
| pfam02170 | 114 | pfam02170, PAZ, PAZ domain | 1e-10 | |
| COG1204 | 766 | COG1204, COG1204, Superfamily II helicase [General | 3e-10 | |
| pfam04851 | 100 | pfam04851, ResIII, Type III restriction enzyme, re | 2e-08 | |
| PHA02558 | 501 | PHA02558, uvsW, UvsW helicase; Provisional | 3e-08 | |
| PRK13766 | 773 | PRK13766, PRK13766, Hef nuclease; Provisional | 4e-08 | |
| PRK00102 | 229 | PRK00102, rnc, ribonuclease III; Reviewed | 1e-07 | |
| PRK11192 | 434 | PRK11192, PRK11192, ATP-dependent RNA helicase Srm | 5e-07 | |
| cd00268 | 203 | cd00268, DEADc, DEAD-box helicases | 9e-07 | |
| PRK01297 | 475 | PRK01297, PRK01297, ATP-dependent RNA helicase Rhl | 1e-06 | |
| TIGR02191 | 220 | TIGR02191, RNaseIII, ribonuclease III, bacterial | 2e-06 | |
| PRK12371 | 235 | PRK12371, PRK12371, ribonuclease III; Reviewed | 4e-06 | |
| PRK04837 | 423 | PRK04837, PRK04837, ATP-dependent RNA helicase Rhl | 5e-06 | |
| cd00593 | 133 | cd00593, RIBOc, RIBOc | 7e-06 | |
| COG1061 | 442 | COG1061, SSL2, DNA or RNA helicases of superfamily | 2e-05 | |
| PTZ00110 | 545 | PTZ00110, PTZ00110, helicase; Provisional | 2e-05 | |
| cd02846 | 114 | cd02846, PAZ_argonaute_like, PAZ domain, argonaute | 4e-05 | |
| PRK01297 | 475 | PRK01297, PRK01297, ATP-dependent RNA helicase Rhl | 5e-05 | |
| PLN00206 | 518 | PLN00206, PLN00206, DEAD-box ATP-dependent RNA hel | 6e-05 | |
| TIGR00643 | 630 | TIGR00643, recG, ATP-dependent DNA helicase RecG | 6e-05 | |
| COG4096 | 875 | COG4096, HsdR, Type I site-specific restriction-mo | 1e-04 | |
| PTZ00424 | 401 | PTZ00424, PTZ00424, helicase 45; Provisional | 3e-04 | |
| cd02845 | 117 | cd02845, PAZ_piwi_like, PAZ domain, Piwi_like subf | 3e-04 | |
| COG1200 | 677 | COG1200, RecG, RecG-like helicase [DNA replication | 3e-04 | |
| PRK04537 | 572 | PRK04537, PRK04537, ATP-dependent RNA helicase Rhl | 3e-04 | |
| COG4098 | 441 | COG4098, comFA, Superfamily II DNA/RNA helicase re | 4e-04 | |
| COG0513 | 513 | COG0513, SrmB, Superfamily II DNA and RNA helicase | 5e-04 | |
| PRK11634 | 629 | PRK11634, PRK11634, ATP-dependent RNA helicase Dea | 6e-04 | |
| PRK12372 | 413 | PRK12372, PRK12372, ribonuclease III; Reviewed | 7e-04 | |
| cd02843 | 122 | cd02843, PAZ_dicer_like, PAZ domain, dicer_like su | 0.001 | |
| smart00535 | 129 | smart00535, RIBOc, Ribonuclease III family | 0.002 | |
| TIGR01389 | 591 | TIGR01389, recQ, ATP-dependent DNA helicase RecQ | 0.002 | |
| PRK14718 | 467 | PRK14718, PRK14718, ribonuclease III; Provisional | 0.002 | |
| PRK11057 | 607 | PRK11057, PRK11057, ATP-dependent DNA helicase Rec | 0.004 | |
| pfam00176 | 301 | pfam00176, SNF2_N, SNF2 family N-terminal domain | 0.004 | |
| COG1205 | 851 | COG1205, COG1205, Distinct helicase family with a | 0.004 |
| >gnl|CDD|224036 COG1111, MPH1, ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 168 bits (427), Expect = 9e-44
Identities = 135/535 (25%), Positives = 220/535 (41%), Gaps = 116/535 (21%)
Query: 46 PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
PR+YQL + A +NT+ VL TG GKT IA M+I A + F ++FLAPT L
Sbjct: 16 PRLYQLNIAAKALFKNTLVVLPTGLGKTFIAAMVI-----ANRLRWFGGKVLFLAPTKPL 70
Query: 106 VHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLS 165
V Q + R T +E G E + ++ K V V TPQ++ + L+ +
Sbjct: 71 VLQHAEFCRKVTGIPEDEIAALTG--EVRPEEREELWAKKKVFVATPQVVENDLKAGRID 128
Query: 166 LDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASP-VVRKGVSSAMDCEG 224
LD V ++ DE H A GN+ Y + KE Y +S P + G+TASP + + ++ G
Sbjct: 129 LDDVSLLIFDEAHRAVGNYAYVFVAKE-YLRSAKNPLILGLTASPGSDLEKIQEVVENLG 187
Query: 225 QISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDAS 284
I + +E +TE + V R Y + +V W K
Sbjct: 188 -IEK-----------VEVRTEEDPDV-------RPYVKKI----------KVEWIKV--- 215
Query: 285 LSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAV-KICLEKVLKA 343
D+ ++ K +R L D L L ELG+I + V K L ++ +
Sbjct: 216 -------------DLPEEIKEIRDLLRDALKPRLKPLKELGVIESSSPVSKKDLLELRQI 262
Query: 344 QEEC------EIYR-----QSSLQCKYFLE-------EVLHVI---------GSALPLAD 376
+ + +R +++ + LE + A
Sbjct: 263 RLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAK 322
Query: 377 KIFLDFGFDYSKAVDL-------GYISTKLHELLQL---FLSFGKSTQVLCIIFVE-RII 425
+ D + +A+ L G KL +L ++ L ++V I+F E R
Sbjct: 323 SLLAD--PYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRV--IVFTEYRDT 378
Query: 426 AAKVVERFVK-----KVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFA 480
A ++V K +V F+ + G ++ K QKE+++ FR G+ N+L A
Sbjct: 379 AEEIVNFLKKIGIKARVRFIGQASREGDKG-------MSQKEQKEIIDQFRKGEYNVLVA 431
Query: 481 TDVIEEGMHVPNCSYVIRFDLPKTVSS---YIQSRGR-ARQHNSQFILMLERSER 531
T V EEG+ +P VI ++ V S IQ +GR R+ + ++++ R
Sbjct: 432 TSVGEEGLDIPEVDLVIFYE---PVPSEIRSIQRKGRTGRKRKGRVVVLVTEGTR 483
|
Length = 542 |
| >gnl|CDD|239210 cd02844, PAZ_CAF_like, PAZ domain, CAF_like subfamily | Back alignment and domain information |
|---|
Score = 137 bits (347), Expect = 2e-37
Identities = 55/129 (42%), Positives = 72/129 (55%), Gaps = 11/129 (8%)
Query: 878 KDVIHLANGSVDAKNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYF 937
D++HLA+GS A +LK VV A H GR Y I I++ +A S F G T+ YF
Sbjct: 16 SDLLHLADGSFCACDLKGSVVTAPHNGRFYVISGILD-LNANSSFPGKEGLGYATYAEYF 74
Query: 938 SEKYGIVLIHPGQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKK--PQMHVHMPP 995
EKYGIVL HP QPLL+ KQ N HNLL N + + G + +K + V +PP
Sbjct: 75 KEKYGIVLNHPNQPLLKGKQIFNLHNLLHNRFE--------EKGESEEKEKDRYFVELPP 126
Query: 996 ELLVRVDVP 1004
EL +D+P
Sbjct: 127 ELCSVIDLP 135
|
CAF (for carpel factory) is a plant homolog of Dicer. CAF has been implicated in flower morphogenesis and in early Arabidopsis development and might function through posttranscriptional regulation of specific mRNA molecules. PAZ domains are named after the proteins Piwi, Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes. Length = 135 |
| >gnl|CDD|238333 cd00593, RIBOc, RIBOc | Back alignment and domain information |
|---|
Score = 120 bits (304), Expect = 1e-31
Identities = 51/168 (30%), Positives = 68/168 (40%), Gaps = 48/168 (28%)
Query: 1046 SLILEALTTLGCCE---SFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAV 1102
SL+LEALT F+ ERLE LGD+VL+ V+ +LF +P EG L+ RS V
Sbjct: 1 SLLLEALTHPSYANEHGRFNNERLEFLGDAVLELVVTEYLFKKFPDLSEGDLTRLRSALV 60
Query: 1103 CNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQD 1162
N TL +L + L Y+R
Sbjct: 61 SNETLARLARELGLGKYLR----------------------------------------- 79
Query: 1163 TKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWL 1210
+GK + + K +AD EALIGA Y+ GG AA + L
Sbjct: 80 ----LGKGEEKSGGRLRPKILADVFEALIGAIYLDGGFEAARKFLLRL 123
|
Ribonuclease III C terminal domain. This group consists of eukaryotic, bacterial and archeal ribonuclease III (RNAse III) proteins. RNAse III is a double stranded RNA-specific endonuclease. Prokaryotic RNAse III is important in post-transcriptional control of mRNA stability and translational efficiency. It is involved in the processing of ribosomal RNA precursors. Prokaryotic RNAse III also plays a role in the maturation of tRNA precursors and in the processing of phage and plasmid transcripts. Eukaryotic RNase III's participate (through direct cleavage) in rRNA processing, in processing of small nucleolar RNAs (snoRNAs) and snRNA's (components of the spliceosome). In eukaryotes RNase III or RNaseIII like enzymes such as Dicer are involved in RNAi (RNA interference) and miRNA (micro-RNA) gene silencing. Length = 133 |
| >gnl|CDD|190615 pfam03368, dsRNA_bind, Double stranded RNA binding domain | Back alignment and domain information |
|---|
Score = 113 bits (286), Expect = 6e-30
Identities = 38/88 (43%), Positives = 57/88 (64%)
Query: 572 SVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQTIVGPTSRNKNLSK 631
++ L++RYC LPSD + + +P F + + Y C + LP N+P + IVG R+K L+K
Sbjct: 1 AIQLLNRYCATLPSDPFTSLRPEFSVEPVDGGYVCTVILPLNSPVREIVGKPMRSKRLAK 60
Query: 632 QLVCLEACEKLHQVGALNDHLLPSVEEP 659
Q +AC+KLH++G LNDHLLP +E
Sbjct: 61 QSAAFKACKKLHELGELNDHLLPIGKER 88
|
This domain is a divergent double stranded RNA-binding domain. It is found in members of the Dicer protein family which function in RNA interference, an evolutionarily conserved mechanism for gene silencing using double-stranded RNA (dsRNA) molecules. Length = 91 |
| >gnl|CDD|237496 PRK13766, PRK13766, Hef nuclease; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 1e-25
Identities = 59/176 (33%), Positives = 88/176 (50%), Gaps = 23/176 (13%)
Query: 43 NFI-PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAP 101
N I R+YQ + A ++NT+ VL TG GKT IA+++I A+ + G K ++ LAP
Sbjct: 12 NTIEARLYQQLLAATALKKNTLVVLPTGLGKTAIALLVI---AERLHKKGGK--VLILAP 66
Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYG-------AKGVDEWDSQCWQKEINKNDVLVMTPQI 154
T LV Q + R + E+ K + W+ K V+V TPQ+
Sbjct: 67 TKPLVEQHAEFFRKFLNIPEEKIVVFTGEVSPEKRAELWE---------KAKVIVATPQV 117
Query: 155 LLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASP 210
+ + L +SL+ V ++ DE H A GN+ Y I + YH+ P V G+TASP
Sbjct: 118 IENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAER-YHEDAKNPLVLGLTASP 172
|
Length = 773 |
| >gnl|CDD|197778 smart00535, RIBOc, Ribonuclease III family | Back alignment and domain information |
|---|
Score = 96.5 bits (241), Expect = 3e-23
Identities = 51/173 (29%), Positives = 64/173 (36%), Gaps = 47/173 (27%)
Query: 1046 SLILEALTTLGCCESF-SMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCN 1104
SL+L ALT ERLE LGD+VL+ V+ +L+ YP EG LS RS V N
Sbjct: 1 SLLLRALTHASYSNEHEHNERLEFLGDAVLELVVTEYLYKKYPDLSEGDLSRLRSALVSN 60
Query: 1105 STLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTK 1164
TL +L L +IR + R P
Sbjct: 61 ETLARLAKKLGLGEFIRLGRGEAIS-------GGRDKP---------------------- 91
Query: 1165 VVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGL-IAALYMMKWLGIDADL 1216
K +AD EALIGA Y+ GL A ++ LG D
Sbjct: 92 ----------------KILADVFEALIGAIYLDSGLEAAREFIRDLLGPRLDE 128
|
Length = 129 |
| >gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 98.7 bits (246), Expect = 4e-23
Identities = 42/173 (24%), Positives = 73/173 (42%), Gaps = 15/173 (8%)
Query: 44 FIPRIYQLKVFEVAKR--RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAP 101
R YQ + E R+ I TG+GKT+ A++ +A+K + ++ L P
Sbjct: 7 EPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPA---LEALKRGKGGR-VLVLVP 62
Query: 102 TVHLVHQQYDVIRVHTDFE----VEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLD 157
T L Q + ++ V Y G ++ + E K D+LV TP LLD
Sbjct: 63 TRELAEQWAEELKKLGPSLGLKVVGLYGGDSKREQLR----KLESGKTDILVTTPGRLLD 118
Query: 158 ALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASP 210
L LSL V +++DE H + + +++ ++ ++A+P
Sbjct: 119 LLENDKLSLSNVDLVILDEAHR-LLDGGFGDQLEKLLKLLPKNVQLLLLSATP 170
|
Length = 201 |
| >gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 88.5 bits (220), Expect = 3e-20
Identities = 38/153 (24%), Positives = 69/153 (45%), Gaps = 11/153 (7%)
Query: 60 RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDF 119
R+ + TG+GKT+ A++ I + + S + ++ LAPT L +Q + ++
Sbjct: 1 RDVLLAAPTGSGKTLAALLPI---LELLDSLKGGQ-VLVLAPTRELANQVAERLKELFGE 56
Query: 120 --EVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDEC 177
+V G Q + K D++V TP LLD L + LSL + +++DE
Sbjct: 57 GIKVGYLIG----GTSIKQQEKLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEA 112
Query: 178 HHATGNHPYTKIMKEFYHKSDNKPKVFGMTASP 210
H N + + + K +V ++A+P
Sbjct: 113 HR-LLNQGFGLLGLKILLKLPKDRQVLLLSATP 144
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. Length = 144 |
| >gnl|CDD|215832 pfam00270, DEAD, DEAD/DEAH box helicase | Back alignment and domain information |
|---|
Score = 84.6 bits (210), Expect = 1e-18
Identities = 35/135 (25%), Positives = 57/135 (42%), Gaps = 11/135 (8%)
Query: 49 YQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVH 107
Q + ++ + TG+GKT+ ++ I QA+ + LAPT L
Sbjct: 3 IQAQAIPAILSGKDVLVQAPTGSGKTLAFLL---PILQALLPKKGGPQALVLAPTRELAE 59
Query: 108 QQYDVIRV---HTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL 164
Q Y+ ++ V G + E + + + D+LV TP LLD LR+ L
Sbjct: 60 QIYEELKKLFKILGLRVALLTGGTSLKEQARKLKKGKA---DILVGTPGRLLDLLRRGKL 116
Query: 165 SL-DIVCFIVIDECH 178
L + +V+DE H
Sbjct: 117 KLLKNLKLLVLDEAH 131
|
Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. Length = 169 |
| >gnl|CDD|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain | Back alignment and domain information |
|---|
Score = 81.0 bits (201), Expect = 2e-18
Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 6/74 (8%)
Query: 442 HLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDL 501
+ VA L G + + ++E+LE FR GK +L ATDV G+ +P+ + VI +DL
Sbjct: 7 GIKVARLHGGLS------QEEREEILEDFRNGKSKVLVATDVAGRGIDLPDVNLVINYDL 60
Query: 502 PKTVSSYIQSRGRA 515
P +SYIQ GRA
Sbjct: 61 PWNPASYIQRIGRA 74
|
The Prosite family is restricted to DEAD/H helicases, whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. Length = 78 |
| >gnl|CDD|197757 smart00490, HELICc, helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Score = 77.3 bits (191), Expect = 5e-17
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 6/74 (8%)
Query: 442 HLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDL 501
+ VA L G L+ + ++E+L+ F GK+ +L ATDV E G+ +P VI +DL
Sbjct: 11 GIKVARLHGG------LSQEEREEILDKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDL 64
Query: 502 PKTVSSYIQSRGRA 515
P + +SYIQ GRA
Sbjct: 65 PWSPASYIQRIGRA 78
|
Length = 82 |
| >gnl|CDD|216036 pfam00636, Ribonuclease_3, Ribonuclease III domain | Back alignment and domain information |
|---|
Score = 75.7 bits (187), Expect = 2e-16
Identities = 39/136 (28%), Positives = 51/136 (37%), Gaps = 45/136 (33%)
Query: 1064 ERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDS 1123
ERLE LGD+VL+ VS +L+ +P EG+L RS V N L KL L Y+R+
Sbjct: 1 ERLEFLGDAVLELYVSEYLYEKFPDLSEGELHRLRSALVSNEALAKLARKLGLDKYLREG 60
Query: 1124 AFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTI 1183
D + + K +
Sbjct: 61 EGDIVK---------------------------------------------RASVKDKVL 75
Query: 1184 ADCAEALIGAYYVGGG 1199
AD EALIGA Y+ GG
Sbjct: 76 ADAFEALIGALYLDGG 91
|
Length = 91 |
| >gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 9e-16
Identities = 40/115 (34%), Positives = 59/115 (51%), Gaps = 14/115 (12%)
Query: 401 ELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTP 460
ELL+ L G +IF + ++K + VA L G +
Sbjct: 19 ELLKEHLKKGGKV----LIFCPSKKMLDELAELLRK----PGIKVAALHGD------GSQ 64
Query: 461 KVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRA 515
+ ++EVL+ FR G++ +L ATDVI G+ +PN S VI +DLP + SSY+Q GRA
Sbjct: 65 EEREEVLKDFREGEIVVLVATDVIARGIDLPNVSVVINYDLPWSPSSYLQRIGRA 119
|
Length = 131 |
| >gnl|CDD|223989 COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 77.1 bits (190), Expect = 2e-14
Identities = 50/214 (23%), Positives = 81/214 (37%), Gaps = 44/214 (20%)
Query: 43 NFIPRIYQ-------LKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKL 95
F R YQ +K +R + VL TGAGKT++A + IA+ +S
Sbjct: 34 EFELRPYQEEALDALVKNRRTERRG--VIVLPTGAGKTVVA---AEAIAELKRS------ 82
Query: 96 IIFLAPTVHLVHQQYDVIRVHTDF--EVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQ 153
+ L PT L+ Q + ++ E+ Y G + KE+ V V T Q
Sbjct: 83 TLVLVPTKELLDQWAEALKKFLLLNDEIGIYGGGE-----------KELEPAKVTVATVQ 131
Query: 154 ILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVR 213
L + I+ DE HH Y +I++ G+TA+P R
Sbjct: 132 TLARRQLLDEFLGNEFGLIIFDEVHHL-PAPSYRRILELLSAAY----PRLGLTATP-ER 185
Query: 214 KGVSSAMDCEGQISELESTLDSQVFTIEDKTEME 247
+ G+I +L + V+ + K ++
Sbjct: 186 EDG-------GRIGDLFDLIGPIVYEVSLKELID 212
|
Length = 442 |
| >gnl|CDD|198017 smart00949, PAZ, This domain is named PAZ after the proteins Piwi Argonaut and Zwille | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 4e-14
Identities = 37/131 (28%), Positives = 55/131 (41%), Gaps = 22/131 (16%)
Query: 890 AKNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPG 949
AK+LK ++VL + + Y I +I N + +S F+ + D TFV Y+ +KY I + P
Sbjct: 24 AKDLKGLIVLTRYNNKTYRIDDIDWNLAPKSTFEKS-DGSEITFVEYYKQKYNITIRDPN 82
Query: 950 QPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVK 1009
QPLL S K N V +PPEL + + K
Sbjct: 83 QPLLV---SRP------------------KRRRNQNGKGEPVLLPPELCFITGLTDRMRK 121
Query: 1010 SLYLLPSVMQR 1020
L+ S+ R
Sbjct: 122 DFMLMKSIADR 132
|
This domain is found in two families of proteins that are involved in post-transcriptional gene silencing. These are the Piwi family and the Dicer family, that includes the Carpel factory protein. The function of the domains is unknown but has been suggested to mediate complex formation between proteins of the Piwi and Dicer families by hetero-dimerisation. The three-dimensional structure of this domain has been solved. The PAZ domain is composed of two subdomains. One subdomain is similar to the OB fold, albeit with a different topology. The OB-fold is well known as a single-stranded nucleic acid binding fold. The second subdomain is composed of a beta-hairpin followed by an alpha-helix. The PAZ domains shows low-affinity nucleic acid binding and appears to interact with the 3' ends of single-stranded regions of RNA in the cleft between the two subdomains. PAZ can bind the characteristic two-base 3' overhangs of siRNAs, indicating that although PAZ may not be a primary nucleic acid binding site in Dicer or RISC, it may contribute to the specific and productive incorporation of siRNAs and miRNAs into the RNAi pathway. Length = 138 |
| >gnl|CDD|223644 COG0571, Rnc, dsRNA-specific ribonuclease [Transcription] | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 2e-13
Identities = 59/231 (25%), Positives = 92/231 (39%), Gaps = 53/231 (22%)
Query: 1240 IKDIESKIGYEFTVKFLLQEAITHAS-VQEFYCYQN-------------------LYKHL 1279
++ +E K+GY F K LL++A+TH S E +N L+K
Sbjct: 8 LEALEKKLGYTFKDKELLEQALTHRSYANEHKAVENNERLEFLGDAVLGLVVAEYLFKKY 67
Query: 1280 QHCS----TLL---------LSQITEYVKSFPK-----PGETTDSGPSMKAPKALGDLLE 1321
+ + L L++I + GE G L D E
Sbjct: 68 PNLPEGELSKLRAALVSEESLAEIAREL-GLGDYLRLGKGEEKSGGRRR--ESILADAFE 124
Query: 1322 SIVGAVLIDTKLNLDEVW--RIFKPILSPIVTPDKLELPPLRELIELCDSLG-----YF- 1373
+++GA+ +D+ L + ++F P L I D+ + P L EL + G Y
Sbjct: 125 ALIGAIYLDSGLEAARKFILKLFLPRLEEIDAGDQFKDPK-TRLQELLQAQGLVLPEYRL 183
Query: 1374 VKENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEV 1424
VKE + E+ + K +G G+ RS+K A+ AA Q LKKL V
Sbjct: 184 VKEEGPAHDKEFTVEVAVGGK---ELGTGKGRSKKEAEQAAAEQALKKLGV 231
|
Length = 235 |
| >gnl|CDD|234633 PRK00102, rnc, ribonuclease III; Reviewed | Back alignment and domain information |
|---|
Score = 71.3 bits (176), Expect = 2e-13
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 12/84 (14%)
Query: 1046 SLILEALTTLGCCESFSM--------ERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSAR 1097
L+++ALT S++ ERLE LGD+VL+ VS +LF +P EG LS
Sbjct: 20 ELLIQALTH----RSYANENKGLKHNERLEFLGDAVLELVVSEYLFKRFPDLDEGDLSKL 75
Query: 1098 RSWAVCNSTLHKLGTDRKLQGYIR 1121
R+ V +L ++ + L Y+
Sbjct: 76 RAALVREESLAEIARELGLGEYLL 99
|
Length = 229 |
| >gnl|CDD|223644 COG0571, Rnc, dsRNA-specific ribonuclease [Transcription] | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 6e-13
Identities = 41/157 (26%), Positives = 57/157 (36%), Gaps = 51/157 (32%)
Query: 1064 ERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDS 1123
ERLE LGD+VL V+ +LF YP EG+LS R+ V +L ++ + L Y+R
Sbjct: 45 ERLEFLGDAVLGLVVAEYLFKKYPNLPEGELSKLRAALVSEESLAEIARELGLGDYLRLG 104
Query: 1124 AFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTI 1183
G + +
Sbjct: 105 KG--------------------------EEKSGGR---------RRE----------SIL 119
Query: 1184 ADCAEALIGAYYVGGGL------IAALYMMKWLGIDA 1214
AD EALIGA Y+ GL I L++ + IDA
Sbjct: 120 ADAFEALIGAIYLDSGLEAARKFILKLFLPRLEEIDA 156
|
Length = 235 |
| >gnl|CDD|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 72.9 bits (179), Expect = 7e-13
Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 12/115 (10%)
Query: 401 ELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTP 460
ELL L + I+FV + + ++K F VA L G L
Sbjct: 262 ELLLKLLKDEDEGR--VIVFVRTKRLVEELAESLRKRGFK----VAALHGD------LPQ 309
Query: 461 KVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRA 515
+ + LE F+ G++ +L ATDV G+ +P+ S+VI +DLP Y+ GR
Sbjct: 310 EERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRT 364
|
Length = 513 |
| >gnl|CDD|233772 TIGR02191, RNaseIII, ribonuclease III, bacterial | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 1e-12
Identities = 21/58 (36%), Positives = 33/58 (56%)
Query: 1064 ERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIR 1121
ERLE LGD+VL V+ +LF +P EG+LS R+ V +L ++ + L ++
Sbjct: 36 ERLEFLGDAVLGLVVAEYLFKNFPDLSEGELSKLRAALVSEESLAEVARELGLGKFLL 93
|
This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family [Transcription, RNA processing]. Length = 220 |
| >gnl|CDD|216914 pfam02170, PAZ, PAZ domain | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 1e-10
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Query: 890 AKNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGNTDDDSK--TFVNYFSEKYGIVLIH 947
K LK ++V + R Y I I + + S F D + YF EKY I L +
Sbjct: 26 TKALKGLIVETTYNNRTYRIDGITWDPTPNSTFP---LKDGGEISVAEYFKEKYNITLKY 82
Query: 948 PGQPLLRLKQ 957
P PLL + +
Sbjct: 83 PNLPLLVVGR 92
|
This domain is named PAZ after the proteins Piwi Argonaut and Zwille. This domain is found in two families of proteins that are involved in post-transcriptional gene silencing. These are the Piwi family and the Dicer family, that includes the Carpel factory protein. The function of the domains is unknown but has been suggested to mediate complex formation between proteins of the Piwi and Dicer families by hetero-dimerisation. The three-dimensional structure of this domain has been solved. The PAZ domain is composed of two subdomains. One subdomain is similar to the OB fold, albeit with a different topology. The OB-fold is well known as a single-stranded nucleic acid binding fold. The second subdomain is composed of a beta-hairpin followed by an alpha-helix. The PAZ domains shows low-affinity nucleic acid binding and appears to interact with the 3' ends of single-stranded regions of RNA in the cleft between the two subdomains. PAZ can bind the characteristic two-base 3' overhangs of siRNAs, indicating that although PAZ may not be a primary nucleic acid binding site in Dicer or RISC, it may contribute to the specific and productive incorporation of siRNAs and miRNAs into the RNAi pathway. Length = 114 |
| >gnl|CDD|224125 COG1204, COG1204, Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 3e-10
Identities = 35/131 (26%), Positives = 60/131 (45%), Gaps = 13/131 (9%)
Query: 50 QLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQ 108
Q V + N + TG+GKT+IA++ I + G K ++++ P L +
Sbjct: 37 QEAVEKGLLSDENVLISAPTGSGKTLIALLAI---LSTLLEGGGK--VVYIVPLKALAEE 91
Query: 109 QYDVIRVHTDFEVEEYYGAK-GVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLD 167
+Y+ +F E G + G+ D + + + DV+V TP+ L RK ++
Sbjct: 92 KYE------EFSRLEELGIRVGISTGDYDLDDERLARYDVIVTTPEKLDSLTRKRPSWIE 145
Query: 168 IVCFIVIDECH 178
V +VIDE H
Sbjct: 146 EVDLVVIDEIH 156
|
Length = 766 |
| >gnl|CDD|218292 pfam04851, ResIII, Type III restriction enzyme, res subunit | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 2e-08
Identities = 32/169 (18%), Positives = 57/169 (33%), Gaps = 72/169 (42%)
Query: 43 NFIPRIYQLKVFE-VAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAP 101
R YQ + E + +++ + V+ TG+GKT+ A LI +A+ K ++F+ P
Sbjct: 1 KLELRPYQEEAIERLLEKKRGLIVMATGSGKTLTAAALIARLAKGKKK------VLFVVP 54
Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
L+ Q +I +DE
Sbjct: 55 RKDLLEQALVII----------------IDE----------------------------- 69
Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASP 210
HH++ Y KI+++F + G+TA+P
Sbjct: 70 ---------------AHHSSAKTKYRKILEKF-----KPAFLLGLTATP 98
|
Length = 100 |
| >gnl|CDD|222875 PHA02558, uvsW, UvsW helicase; Provisional | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 3e-08
Identities = 51/181 (28%), Positives = 73/181 (40%), Gaps = 26/181 (14%)
Query: 46 PRIYQLK-VFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVH 104
P YQ V+E K + L T AGK++I +L + + + K LII PT
Sbjct: 115 PHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLENYEG---KVLII--VPTTS 169
Query: 105 LVHQQYDVIRVHTDFEVEEYYGAK-GVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAF 163
LV Q D + F E + G K+ + ++V T Q + ++ F
Sbjct: 170 LVTQMIDDFVDYRLFPREAMHKIYSGTA--------KDTDA-PIVVSTWQSAVKQPKEWF 220
Query: 164 LSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCE 223
IV DECH TG T I+ K DN FG+T S R G ++ +
Sbjct: 221 DQFG--MVIV-DECHLFTGKS-LTSIIT----KLDNCKFKFGLTGSL--RDGKANILQYV 270
Query: 224 G 224
G
Sbjct: 271 G 271
|
Length = 501 |
| >gnl|CDD|237496 PRK13766, PRK13766, Hef nuclease; Provisional | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 4e-08
Identities = 39/134 (29%), Positives = 65/134 (48%), Gaps = 29/134 (21%)
Query: 398 KLHELLQLFLSFGKSTQVLCIIFVE-RIIAAKVVE----------RFVKKVPFLTHLTVA 446
KL E+++ L +++ I+F + R A K+V+ RFV +
Sbjct: 351 KLREIVKEQLGKNPDSRI--IVFTQYRDTAEKIVDLLEKEGIKAVRFVGQ---------- 398
Query: 447 YLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFD-LPKTV 505
S ++ K Q E+L+ FR G+ N+L +T V EEG+ +P+ VI ++ +P +
Sbjct: 399 ---ASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEI 455
Query: 506 SSYIQSRGRA-RQH 518
S IQ +GR RQ
Sbjct: 456 RS-IQRKGRTGRQE 468
|
Length = 773 |
| >gnl|CDD|234633 PRK00102, rnc, ribonuclease III; Reviewed | Back alignment and domain information |
|---|
Score = 54.0 bits (131), Expect = 1e-07
Identities = 60/250 (24%), Positives = 94/250 (37%), Gaps = 85/250 (34%)
Query: 1236 RINEIKDIESKIGYEFTVKFLLQEAITHASVQEFYCYQNLYKHLQHC--------STLLL 1287
++++++ K+GY F LL +A+TH S Y N K L+H + L L
Sbjct: 1 MKKDLEELQKKLGYTFKDPELLIQALTHRS------YANENKGLKHNERLEFLGDAVLEL 54
Query: 1288 SQITEYV-KSFPK-----------------------------------PGETTDSGPSMK 1311
++EY+ K FP GE G +
Sbjct: 55 V-VSEYLFKRFPDLDEGDLSKLRAALVREESLAEIARELGLGEYLLLGKGEEKSGG--RR 111
Query: 1312 APKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELI------- 1364
P L D E+++GA+ +D L+ + + P ++E L +L+
Sbjct: 112 RPSILADAFEALIGAIYLDQ--GLEAARKFILRLFEP-----RIEEIDLGDLVKDYKTRL 164
Query: 1365 -ELCDSLG-----YF-VKENCTLKGEM----VHAELRLQLKDVLLVGEGQERSRKAAKGK 1413
EL G Y VKE +G E+ + K +GEG S+K A+
Sbjct: 165 QELLQGRGLPLPEYELVKE----EGPAHDKEFTVEVTVNGK---ELGEGTGSSKKEAEQA 217
Query: 1414 AASQLLKKLE 1423
AA Q LKKL+
Sbjct: 218 AAKQALKKLK 227
|
Length = 229 |
| >gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 5e-07
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 4/59 (6%)
Query: 462 VQK---EVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR-AR 516
VQ E ++ G+VN+L ATDV G+ + + S+VI FD+P++ +Y+ GR R
Sbjct: 280 VQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGR 338
|
Length = 434 |
| >gnl|CDD|238167 cd00268, DEADc, DEAD-box helicases | Back alignment and domain information |
|---|
Score = 50.9 bits (123), Expect = 9e-07
Identities = 40/124 (32%), Positives = 62/124 (50%), Gaps = 14/124 (11%)
Query: 60 RNTIAVLETGAGKTMIAV--MLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRV-- 115
R+ I +TG+GKT + +L K + + K +G + LI LAPT L Q +V R
Sbjct: 37 RDVIGQAQTGSGKTAAFLIPILEK-LDPSPKKDGPQALI--LAPTRELALQIAEVARKLG 93
Query: 116 -HTDFEVEEYYGAKGVDEWDSQCWQKEINKN-DVLVMTPQILLDALRKAFLSLDIVCFIV 173
HT+ +V YG G +++ + ++V TP LLD L + L L V ++V
Sbjct: 94 KHTNLKVVVIYG--GTSIDKQI---RKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLV 148
Query: 174 IDEC 177
+DE
Sbjct: 149 LDEA 152
|
A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. Length = 203 |
| >gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 53.0 bits (127), Expect = 1e-06
Identities = 22/57 (38%), Positives = 32/57 (56%)
Query: 465 EVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQ 521
+ LE FR GK+ +L ATDV G+H+ S+VI F LP+ Y+ GR + +
Sbjct: 376 KTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGAS 432
|
Length = 475 |
| >gnl|CDD|233772 TIGR02191, RNaseIII, ribonuclease III, bacterial | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 2e-06
Identities = 51/234 (21%), Positives = 91/234 (38%), Gaps = 68/234 (29%)
Query: 1243 IESKIGYEFTVKFLLQEAITHASVQEFYCYQNLYKHLQHCSTL---------LLSQITEY 1293
+E ++GY+F K LL++A+TH+S Y ++ +K +++ L L+ + EY
Sbjct: 1 LEKRLGYKFKNKELLEQALTHSS----YANEH-HKGVKNNERLEFLGDAVLGLV--VAEY 53
Query: 1294 V-KSFPK-----------------------------------PGETTDSGPSMKAPKALG 1317
+ K+FP GE G L
Sbjct: 54 LFKNFPDLSEGELSKLRAALVSEESLAEVARELGLGKFLLLGKGEEKSGGRRR--ESILA 111
Query: 1318 DLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLR---ELIELCDSLG--- 1371
D E+++GA+ +D+ L+ + +L P + + E L E + G
Sbjct: 112 DAFEALIGAIYLDS--GLEAARKFILKLLIPRIDAIEKEETLKDYKTALQEWAQARGKPL 169
Query: 1372 --Y-FVKENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKL 1422
Y +KE + E+ + + GEG+ +S+K A+ AA L+KL
Sbjct: 170 PEYRLIKEEGPDHDKEFTVEVSVNGE---PYGEGKGKSKKEAEQNAAKAALEKL 220
|
This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family [Transcription, RNA processing]. Length = 220 |
| >gnl|CDD|171444 PRK12371, PRK12371, ribonuclease III; Reviewed | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 4e-06
Identities = 39/140 (27%), Positives = 51/140 (36%), Gaps = 45/140 (32%)
Query: 1064 ERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDS 1123
ERLE LGD VL V+ LF +P EG+LS R + V T + + L IR +
Sbjct: 47 ERLEFLGDRVLGLCVAEMLFEAFPDASEGELSVRLNQLVNAETCAAIADEIGLHDLIR-T 105
Query: 1124 AFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTI 1183
D ++ L++R
Sbjct: 106 GSDVKKLTGKRLLNVR-------------------------------------------- 121
Query: 1184 ADCAEALIGAYYVGGGLIAA 1203
AD EALI A Y+ GGL AA
Sbjct: 122 ADVVEALIAAIYLDGGLEAA 141
|
Length = 235 |
| >gnl|CDD|235314 PRK04837, PRK04837, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 5e-06
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 446 AYLTGSTTSVDALTPKV-QKE---VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDL 501
+L V LT V QK+ +LE F G +++L ATDV G+H+P ++V +DL
Sbjct: 273 GHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFNYDL 332
Query: 502 PKTVSSYIQSRGR 514
P Y+ GR
Sbjct: 333 PDDCEDYVHRIGR 345
|
Length = 423 |
| >gnl|CDD|238333 cd00593, RIBOc, RIBOc | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 7e-06
Identities = 26/134 (19%), Positives = 43/134 (32%), Gaps = 40/134 (29%)
Query: 1256 LLQEAITHASVQEF---YCYQNL----------------YKHLQHCS----TLLLSQI-- 1290
LL EA+TH S + + L +K S T L S +
Sbjct: 2 LLLEALTHPSYANEHGRFNNERLEFLGDAVLELVVTEYLFKKFPDLSEGDLTRLRSALVS 61
Query: 1291 ----TEYVKS-------FPKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVW 1339
+ GE G PK L D+ E+++GA+ +D +
Sbjct: 62 NETLARLARELGLGKYLRLGKGEEKSGG--RLRPKILADVFEALIGAIYLDG--GFEAAR 117
Query: 1340 RIFKPILSPIVTPD 1353
+ +L P++
Sbjct: 118 KFLLRLLGPLIEEI 131
|
Ribonuclease III C terminal domain. This group consists of eukaryotic, bacterial and archeal ribonuclease III (RNAse III) proteins. RNAse III is a double stranded RNA-specific endonuclease. Prokaryotic RNAse III is important in post-transcriptional control of mRNA stability and translational efficiency. It is involved in the processing of ribosomal RNA precursors. Prokaryotic RNAse III also plays a role in the maturation of tRNA precursors and in the processing of phage and plasmid transcripts. Eukaryotic RNase III's participate (through direct cleavage) in rRNA processing, in processing of small nucleolar RNAs (snoRNAs) and snRNA's (components of the spliceosome). In eukaryotes RNase III or RNaseIII like enzymes such as Dicer are involved in RNAi (RNA interference) and miRNA (micro-RNA) gene silencing. Length = 133 |
| >gnl|CDD|223989 COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 2e-05
Identities = 27/126 (21%), Positives = 50/126 (39%), Gaps = 13/126 (10%)
Query: 389 AVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYL 448
K+ + L L + + +IF + A + + FL V +
Sbjct: 260 RRIAIASERKIAAVRGLLLKHARGDKT--LIFASDVEHAYEIAKL-----FLAPGIVEAI 312
Query: 449 TGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSY 508
TG T + ++ +LE FR G + +L V++EG+ +P+ +I + +
Sbjct: 313 TGETP------KEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLF 366
Query: 509 IQSRGR 514
IQ GR
Sbjct: 367 IQRLGR 372
|
Length = 442 |
| >gnl|CDD|240273 PTZ00110, PTZ00110, helicase; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 2e-05
Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 461 KVQKE---VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514
K Q+E VL F+ GK ++ ATDV G+ V + YVI FD P + Y+ GR
Sbjct: 411 KKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGR 467
|
Length = 545 |
| >gnl|CDD|239212 cd02846, PAZ_argonaute_like, PAZ domain, argonaute_like subfamily | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 4e-05
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 893 LKDMVVLAIH---TGRIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPG 949
LK + V H T R Y I + +++ F+ + + +YF EKY I L +P
Sbjct: 32 LKGLKVEVTHRGNTNRKYKIKGLSAEPASQQTFELKDGEKEISVADYFKEKYNIRLKYPN 91
Query: 950 QPLLRLKQSHNP 961
P L++ + P
Sbjct: 92 LPCLQVGRKGKP 103
|
Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes. Length = 114 |
| >gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 47.2 bits (112), Expect = 5e-05
Identities = 51/162 (31%), Positives = 76/162 (46%), Gaps = 21/162 (12%)
Query: 60 RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKK--------LIIFLAPTVHLVHQ-QY 110
+ I +TG GKT A LI I Q +++ K+ LII APT LV Q
Sbjct: 125 HDAIGRAQTGTGKT--AAFLISIINQLLQTPPPKERYMGEPRALII--APTRELVVQIAK 180
Query: 111 DVIRV--HTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDI 168
D + +T V + G G+D +D Q Q E D+LV TP LLD ++ + LD+
Sbjct: 181 DAAALTKYTGLNVMTFVG--GMD-FDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDM 237
Query: 169 VCFIVIDECHHA--TGNHPYTK-IMKEFYHKSDNKPKVFGMT 207
V +V+DE G P + I+++ K + + +F T
Sbjct: 238 VEVMVLDEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSAT 279
|
Length = 475 |
| >gnl|CDD|215103 PLN00206, PLN00206, DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 6e-05
Identities = 22/55 (40%), Positives = 34/55 (61%)
Query: 461 KVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRA 515
K ++EV++SF G+V ++ AT V+ G+ + VI FD+P T+ YI GRA
Sbjct: 405 KERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRA 459
|
Length = 518 |
| >gnl|CDD|233069 TIGR00643, recG, ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 6e-05
Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 20/105 (19%)
Query: 443 LTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVI----- 497
V L G + ++ V+E FR G+V++L AT VIE G+ VPN + ++
Sbjct: 483 YNVGLLHGR------MKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVIEDAE 536
Query: 498 RFDLPKTVSSYIQSRGR-AR-QHNSQFILMLERSERSVTDTALSR 540
RF L S Q RGR R H S +L+ + +++A R
Sbjct: 537 RFGL----SQLHQLRGRVGRGDHQSYCLLV---YKNPKSESAKKR 574
|
[DNA metabolism, DNA replication, recombination, and repair]. Length = 630 |
| >gnl|CDD|226581 COG4096, HsdR, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 1e-04
Identities = 39/146 (26%), Positives = 56/146 (38%), Gaps = 29/146 (19%)
Query: 46 PRIYQL----KVFE-VAKRRNTI-AVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFL 99
PR YQ+ +V E +K +N V+ TG GKT A+ +I + IKS K+ ++FL
Sbjct: 166 PRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIID---RLIKSGWVKR-VLFL 221
Query: 100 APTVHLVHQQYDVIRVHTDFE-----VEEYYGAKGVDEWDS--QCWQKEINKNDVLVMTP 152
A LV Q Y F +E+ G + + S Q I + +
Sbjct: 222 ADRNALVDQAYGAFEDFLPFGTKMNKIEDKKGDTSSEIYLSTYQTMTGRIEQKEDEYRR- 280
Query: 153 QILLDALRKAFLSLDIVCFIVIDECH 178
IVIDE H
Sbjct: 281 -----------FGPGFFDLIVIDEAH 295
|
Length = 875 |
| >gnl|CDD|185609 PTZ00424, PTZ00424, helicase 45; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 3e-04
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 435 KKVPFLT-HLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNC 493
+KV +LT + T S D + K + ++ FR G +L TD++ G+ V
Sbjct: 278 RKVDYLTKKMHERDFTVSCMHGD-MDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQV 336
Query: 494 SYVIRFDLPKTVSSYIQSRGRA 515
S VI +DLP + +YI GR+
Sbjct: 337 SLVINYDLPASPENYIHRIGRS 358
|
Length = 401 |
| >gnl|CDD|239211 cd02845, PAZ_piwi_like, PAZ domain, Piwi_like subfamily | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 3e-04
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 891 KNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQ 950
K L +VL + + Y I +I + + S F +D TFV Y+ ++Y I + Q
Sbjct: 26 KELIGSIVLTRYNNKTYRIDDIDFDKTPLSTFK-KSDGTEITFVEYYKKQYNIEITDLNQ 84
Query: 951 PLL 953
PLL
Sbjct: 85 PLL 87
|
In multi-cellular organisms, the Piwi protein appears to be essential for the maintenance of germline stem cells. In the Drosophila male germline, Piwi was shown to be involved in the silencing of retrotransposons in the male gametes. The Piwi proteins share their domain architecture with other members of the argonaute family. The PAZ domain has been named after the proteins Piwi, Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes. Length = 117 |
| >gnl|CDD|224121 COG1200, RecG, RecG-like helicase [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 3e-04
Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 17/111 (15%)
Query: 422 ERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFAT 481
E++ E + + FL L V + G + P + V+E+F+ G++++L AT
Sbjct: 487 EKLELQAAEELYEELKSFLPELKVGLVHGR------MKPAEKDAVMEAFKEGEIDILVAT 540
Query: 482 DVIEEGMHVPNCSY-VI----RFDLPKTVSSYIQSRGR-AR-QHNSQFILM 525
VIE G+ VPN + VI RF L + Q RGR R S +L+
Sbjct: 541 TVIEVGVDVPNATVMVIENAERFGL----AQLHQLRGRVGRGDLQSYCVLL 587
|
Length = 677 |
| >gnl|CDD|235307 PRK04537, PRK04537, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 3e-04
Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 18/97 (18%)
Query: 419 IFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKE-VLESFRGGKVNL 477
FVER+ A+ +ER V L+G P+ ++E +L F+ G++ +
Sbjct: 268 AFVERV--ARTLER--------HGYRVGVLSGDV-------PQKKRESLLNRFQKGQLEI 310
Query: 478 LFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514
L ATDV G+H+ YV +DLP Y+ GR
Sbjct: 311 LVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGR 347
|
Length = 572 |
| >gnl|CDD|226583 COG4098, comFA, Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 4e-04
Identities = 36/138 (26%), Positives = 61/138 (44%), Gaps = 18/138 (13%)
Query: 384 FDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAA-KVVERFVKKVPFLTH 442
+++K + + KL L+ + T +IF I +V KK+P T
Sbjct: 279 GNWNKKLQRNKLPLKLKRWLE----KQRKTGRPVLIFFPEIETMEQVAAALKKKLPKETI 334
Query: 443 LTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCS-YVIRFDL 501
+V S D + +KE +E+FR GK+ LL T ++E G+ PN +V+ +
Sbjct: 335 ASVH-------SED----QHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEH 383
Query: 502 PK-TVSSYIQSRGRARQH 518
T S+ +Q GR +
Sbjct: 384 RVFTESALVQIAGRVGRS 401
|
Length = 441 |
| >gnl|CDD|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 5e-04
Identities = 39/136 (28%), Positives = 61/136 (44%), Gaps = 18/136 (13%)
Query: 50 QLKVFEVA-KRRNTIAVLETGAGKTMIAVML--IKDIAQAIKSNGFKKLIIFLAPTVHLV 106
QL + R+ + +TG GKT A +L ++ I ++++ LI LAPT L
Sbjct: 56 QLAAIPLILAGRDVLGQAQTGTGKTA-AFLLPLLQKILKSVERKYVSALI--LAPTRELA 112
Query: 107 HQQYDVIR----VHTDFEVEEYYGAKGVDEWDSQCWQKEINKN--DVLVMTPQILLDALR 160
Q + +R V YG + + Q E K D++V TP LLD ++
Sbjct: 113 VQIAEELRKLGKNLGGLRVAVVYGGVSIRK------QIEALKRGVDIVVATPGRLLDLIK 166
Query: 161 KAFLSLDIVCFIVIDE 176
+ L L V +V+DE
Sbjct: 167 RGKLDLSGVETLVLDE 182
|
Length = 513 |
| >gnl|CDD|236941 PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 6e-04
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 462 VQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQ--HN 519
++++ LE + G++++L ATDV G+ V S V+ +D+P SY+ GR +
Sbjct: 283 LREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRA 342
Query: 520 SQFILMLERSER 531
+ +L +E ER
Sbjct: 343 GRALLFVENRER 354
|
Length = 629 |
| >gnl|CDD|237081 PRK12372, PRK12372, ribonuclease III; Reviewed | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 7e-04
Identities = 35/88 (39%), Positives = 46/88 (52%), Gaps = 15/88 (17%)
Query: 1026 LASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSM---ERLELLGDSVLKYAVSCHL 1082
L S+LR E RN + L+ +ALT S S ERLE LGDSVL AV+ L
Sbjct: 6 LESRLRYEF----RN----AELLRQALTH----RSHSATHNERLEFLGDSVLNCAVAALL 53
Query: 1083 FLTYPKKHEGQLSARRSWAVCNSTLHKL 1110
F + K EG LS R+ V +L+++
Sbjct: 54 FQRFGKLDEGDLSRVRANLVKQQSLYEI 81
|
Length = 413 |
| >gnl|CDD|239209 cd02843, PAZ_dicer_like, PAZ domain, dicer_like subfamily | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.001
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 907 YSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLL 965
+ + EI + S F G + +TF Y+ +KY + + + QPLL + + NLL
Sbjct: 59 FYVAEICTDLRPLSKFPGP---EYETFEEYYKKKYKLDIQNLNQPLLDVDHTSTRLNLL 114
|
Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes. Length = 122 |
| >gnl|CDD|197778 smart00535, RIBOc, Ribonuclease III family | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.002
Identities = 29/133 (21%), Positives = 45/133 (33%), Gaps = 42/133 (31%)
Query: 1256 LLQEAITHASVQ-EFYCYQNL----------------YKHLQHCSTLLLS---------- 1288
LL A+THAS E + L YK S LS
Sbjct: 2 LLLRALTHASYSNEHEHNERLEFLGDAVLELVVTEYLYKKYPDLSEGDLSRLRSALVSNE 61
Query: 1289 ---------QITEYVKSFPKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVW 1339
+ E+++ GE G PK L D+ E+++GA+ +D L+
Sbjct: 62 TLARLAKKLGLGEFIRL--GRGEAISGG--RDKPKILADVFEALIGAIYLD--SGLEAAR 115
Query: 1340 RIFKPILSPIVTP 1352
+ +L P +
Sbjct: 116 EFIRDLLGPRLDE 128
|
Length = 129 |
| >gnl|CDD|130456 TIGR01389, recQ, ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 0.002
Identities = 22/58 (37%), Positives = 32/58 (55%)
Query: 458 LTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRA 515
L+ KV+ E E F V ++ AT+ G+ PN +VI +D+P + SY Q GRA
Sbjct: 258 LSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRA 315
|
The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ [DNA metabolism, DNA replication, recombination, and repair]. Length = 591 |
| >gnl|CDD|173181 PRK14718, PRK14718, ribonuclease III; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (98), Expect = 0.002
Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 5/87 (5%)
Query: 1025 MLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFL 1084
M SQL + RN + L+ +ALT + + ERLE LGDSVL AV+ LF
Sbjct: 1 MPLSQLESRLRYEFRN----AELLRQALTHRSHSATHN-ERLEFLGDSVLNCAVAALLFQ 55
Query: 1085 TYPKKHEGQLSARRSWAVCNSTLHKLG 1111
+ K EG LS R+ V +L+++
Sbjct: 56 RFGKLDEGDLSRVRANLVKQQSLYEIA 82
|
Length = 467 |
| >gnl|CDD|182933 PRK11057, PRK11057, ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.004
Identities = 18/51 (35%), Positives = 31/51 (60%)
Query: 465 EVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRA 515
+V E+F+ + ++ AT G++ PN +V+ FD+P+ + SY Q GRA
Sbjct: 277 DVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRA 327
|
Length = 607 |
| >gnl|CDD|215770 pfam00176, SNF2_N, SNF2 family N-terminal domain | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.004
Identities = 28/142 (19%), Positives = 50/142 (35%), Gaps = 18/142 (12%)
Query: 49 YQLK-----VFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTV 103
YQL+ + + I E G GKT+ + L+ + + + + P
Sbjct: 1 YQLEGVNWLISLESNGLGGILADEMGLGKTLQTIALLA--TYLKEGKDRRGPTLVVCPLS 58
Query: 104 HLVHQQYDVIRVHT-DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA 162
+H + V Y+G Q K ++ DV++ T + LRK
Sbjct: 59 -TLHNWLNEFEKWAPALRVVVYHGDGRERSKLRQSMAKRLDTYDVVITT----YEVLRKD 113
Query: 163 FLSLDIVC-----FIVIDECHH 179
L ++ +V+DE H
Sbjct: 114 KKLLSLLNKVEWDRVVLDEAHR 135
|
This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g. ERCC6, RAD16, RAD5), DNA recombination (e.g. RAD54), and chromatin unwinding (e.g. ISWI) as well as a variety of other proteins with little functional information (e.g. lodestar, ETL1). Length = 301 |
| >gnl|CDD|224126 COG1205, COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.004
Identities = 32/168 (19%), Positives = 64/168 (38%), Gaps = 36/168 (21%)
Query: 31 AVDGPSSSTNSINFIPRIY--QLKVFEVAKR-RNTIAVLETGAGKT---MIAVMLIKDIA 84
D S I R+Y Q+ + + RN + TG+GKT ++ + +
Sbjct: 54 LRDESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPI-----LD 108
Query: 85 QAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEW-------DSQC 137
++ + L+++ PT L + Q + +R + + D+
Sbjct: 109 HLLRDPSARALLLY--PTNALANDQAERLRE---------LISDLPGKVTFGRYTGDTPP 157
Query: 138 WQKE---INKNDVLVMTPQIL-LDALRKAFLSLDI---VCFIVIDECH 178
++ N D+L+ P +L LR L + + ++V+DE H
Sbjct: 158 EERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELH 205
|
Length = 851 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1590 | |||
| KOG0701 | 1606 | consensus dsRNA-specific nuclease Dicer and relate | 100.0 | |
| COG1111 | 542 | MPH1 ERCC4-like helicases [DNA replication, recomb | 100.0 | |
| KOG0354 | 746 | consensus DEAD-box like helicase [General function | 100.0 | |
| PRK13766 | 773 | Hef nuclease; Provisional | 100.0 | |
| KOG0331 | 519 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| PTZ00110 | 545 | helicase; Provisional | 100.0 | |
| PLN00206 | 518 | DEAD-box ATP-dependent RNA helicase; Provisional | 100.0 | |
| PRK04837 | 423 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| KOG0330 | 476 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| PRK11192 | 434 | ATP-dependent RNA helicase SrmB; Provisional | 100.0 | |
| PRK11776 | 460 | ATP-dependent RNA helicase DbpA; Provisional | 100.0 | |
| PRK10590 | 456 | ATP-dependent RNA helicase RhlE; Provisional | 100.0 | |
| KOG1817 | 533 | consensus Ribonuclease [RNA processing and modific | 100.0 | |
| PRK01297 | 475 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| COG0571 | 235 | Rnc dsRNA-specific ribonuclease [Transcription] | 100.0 | |
| PRK11634 | 629 | ATP-dependent RNA helicase DeaD; Provisional | 100.0 | |
| PRK04537 | 572 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| KOG0701 | 1606 | consensus dsRNA-specific nuclease Dicer and relate | 100.0 | |
| PTZ00424 | 401 | helicase 45; Provisional | 100.0 | |
| PRK14718 | 467 | ribonuclease III; Provisional | 100.0 | |
| PRK12371 | 235 | ribonuclease III; Reviewed | 100.0 | |
| TIGR00603 | 732 | rad25 DNA repair helicase rad25. All proteins in t | 100.0 | |
| PRK12372 | 413 | ribonuclease III; Reviewed | 100.0 | |
| KOG0338 | 691 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| COG0513 | 513 | SrmB Superfamily II DNA and RNA helicases [DNA rep | 100.0 | |
| TIGR00614 | 470 | recQ_fam ATP-dependent DNA helicase, RecQ family. | 100.0 | |
| TIGR03817 | 742 | DECH_helic helicase/secretion neighborhood putativ | 100.0 | |
| KOG0345 | 567 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0340 | 442 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| PLN03137 | 1195 | ATP-dependent DNA helicase; Q4-like; Provisional | 100.0 | |
| KOG0328 | 400 | consensus Predicted ATP-dependent RNA helicase FAL | 100.0 | |
| PHA02558 | 501 | uvsW UvsW helicase; Provisional | 100.0 | |
| PRK11057 | 607 | ATP-dependent DNA helicase RecQ; Provisional | 100.0 | |
| PRK04914 | 956 | ATP-dependent helicase HepA; Validated | 99.98 | |
| KOG0326 | 459 | consensus ATP-dependent RNA helicase [RNA processi | 99.98 | |
| KOG0333 | 673 | consensus U5 snRNP-like RNA helicase subunit [RNA | 99.98 | |
| KOG0343 | 758 | consensus RNA Helicase [RNA processing and modific | 99.98 | |
| TIGR01389 | 591 | recQ ATP-dependent DNA helicase RecQ. The ATP-depe | 99.98 | |
| PRK13767 | 876 | ATP-dependent helicase; Provisional | 99.98 | |
| COG1061 | 442 | SSL2 DNA or RNA helicases of superfamily II [Trans | 99.97 | |
| KOG0335 | 482 | consensus ATP-dependent RNA helicase [RNA processi | 99.97 | |
| PRK02362 | 737 | ski2-like helicase; Provisional | 99.97 | |
| TIGR00580 | 926 | mfd transcription-repair coupling factor (mfd). Al | 99.97 | |
| KOG0342 | 543 | consensus ATP-dependent RNA helicase pitchoune [RN | 99.97 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 99.97 | |
| PRK00102 | 229 | rnc ribonuclease III; Reviewed | 99.97 | |
| TIGR00643 | 630 | recG ATP-dependent DNA helicase RecG. | 99.97 | |
| PRK00254 | 720 | ski2-like helicase; Provisional | 99.96 | |
| PLN03142 | 1033 | Probable chromatin-remodeling complex ATPase chain | 99.96 | |
| PRK01172 | 674 | ski2-like helicase; Provisional | 99.96 | |
| KOG0348 | 708 | consensus ATP-dependent RNA helicase [RNA processi | 99.96 | |
| KOG0339 | 731 | consensus ATP-dependent RNA helicase [RNA processi | 99.96 | |
| KOG0347 | 731 | consensus RNA helicase [RNA processing and modific | 99.96 | |
| TIGR02191 | 220 | RNaseIII ribonuclease III, bacterial. This family | 99.96 | |
| PRK10689 | 1147 | transcription-repair coupling factor; Provisional | 99.96 | |
| KOG0350 | 620 | consensus DEAD-box ATP-dependent RNA helicase [RNA | 99.96 | |
| KOG0385 | 971 | consensus Chromatin remodeling complex WSTF-ISWI, | 99.96 | |
| KOG0341 | 610 | consensus DEAD-box protein abstrakt [RNA processin | 99.96 | |
| KOG0336 | 629 | consensus ATP-dependent RNA helicase [RNA processi | 99.96 | |
| COG1201 | 814 | Lhr Lhr-like helicases [General function predictio | 99.96 | |
| KOG0332 | 477 | consensus ATP-dependent RNA helicase [RNA processi | 99.96 | |
| KOG4284 | 980 | consensus DEAD box protein [Transcription] | 99.95 | |
| KOG0346 | 569 | consensus RNA helicase [RNA processing and modific | 99.95 | |
| PRK09751 | 1490 | putative ATP-dependent helicase Lhr; Provisional | 99.95 | |
| COG0514 | 590 | RecQ Superfamily II DNA helicase [DNA replication, | 99.95 | |
| TIGR02621 | 844 | cas3_GSU0051 CRISPR-associated helicase Cas3, Anae | 99.95 | |
| COG1204 | 766 | Superfamily II helicase [General function predicti | 99.95 | |
| PRK11448 | 1123 | hsdR type I restriction enzyme EcoKI subunit R; Pr | 99.95 | |
| KOG0384 | 1373 | consensus Chromodomain-helicase DNA-binding protei | 99.94 | |
| TIGR01587 | 358 | cas3_core CRISPR-associated helicase Cas3. This mo | 99.94 | |
| KOG0344 | 593 | consensus ATP-dependent RNA helicase [RNA processi | 99.94 | |
| TIGR03158 | 357 | cas3_cyano CRISPR-associated helicase, Cyano-type. | 99.94 | |
| COG1202 | 830 | Superfamily II helicase, archaea-specific [General | 99.94 | |
| TIGR01970 | 819 | DEAH_box_HrpB ATP-dependent helicase HrpB. This mo | 99.94 | |
| KOG0334 | 997 | consensus RNA helicase [RNA processing and modific | 99.94 | |
| KOG0392 | 1549 | consensus SNF2 family DNA-dependent ATPase domain- | 99.94 | |
| PRK11664 | 812 | ATP-dependent RNA helicase HrpB; Provisional | 99.93 | |
| PHA02653 | 675 | RNA helicase NPH-II; Provisional | 99.93 | |
| KOG0387 | 923 | consensus Transcription-coupled repair protein CSB | 99.93 | |
| COG1200 | 677 | RecG RecG-like helicase [DNA replication, recombin | 99.93 | |
| KOG0389 | 941 | consensus SNF2 family DNA-dependent ATPase [Chroma | 99.93 | |
| PRK09401 | 1176 | reverse gyrase; Reviewed | 99.92 | |
| KOG0327 | 397 | consensus Translation initiation factor 4F, helica | 99.92 | |
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 99.92 | |
| COG1205 | 851 | Distinct helicase family with a unique C-terminal | 99.92 | |
| KOG0390 | 776 | consensus DNA repair protein, SNF2 family [Replica | 99.92 | |
| KOG0337 | 529 | consensus ATP-dependent RNA helicase [RNA processi | 99.92 | |
| TIGR03714 | 762 | secA2 accessory Sec system translocase SecA2. Memb | 99.91 | |
| TIGR00595 | 505 | priA primosomal protein N'. All proteins in this f | 99.91 | |
| PRK14701 | 1638 | reverse gyrase; Provisional | 99.91 | |
| PRK09200 | 790 | preprotein translocase subunit SecA; Reviewed | 99.91 | |
| PF03368 | 90 | Dicer_dimer: Dicer dimerisation domain; InterPro: | 99.91 | |
| COG1197 | 1139 | Mfd Transcription-repair coupling factor (superfam | 99.9 | |
| TIGR00963 | 745 | secA preprotein translocase, SecA subunit. The pro | 99.89 | |
| PRK12898 | 656 | secA preprotein translocase subunit SecA; Reviewed | 99.89 | |
| KOG0952 | 1230 | consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup | 99.89 | |
| PRK11131 | 1294 | ATP-dependent RNA helicase HrpA; Provisional | 99.89 | |
| KOG0329 | 387 | consensus ATP-dependent RNA helicase [RNA processi | 99.89 | |
| TIGR01054 | 1171 | rgy reverse gyrase. Generally, these gyrases are e | 99.88 | |
| KOG0351 | 941 | consensus ATP-dependent DNA helicase [Replication, | 99.88 | |
| COG4096 | 875 | HsdR Type I site-specific restriction-modification | 99.88 | |
| TIGR01967 | 1283 | DEAH_box_HrpA ATP-dependent helicase HrpA. This mo | 99.88 | |
| KOG0352 | 641 | consensus ATP-dependent DNA helicase [Replication, | 99.88 | |
| PRK09694 | 878 | helicase Cas3; Provisional | 99.87 | |
| TIGR00348 | 667 | hsdR type I site-specific deoxyribonuclease, HsdR | 99.87 | |
| PF14622 | 128 | Ribonucleas_3_3: Ribonuclease-III-like; PDB: 1O0W_ | 99.86 | |
| smart00535 | 129 | RIBOc Ribonuclease III family. | 99.84 | |
| cd00593 | 133 | RIBOc RIBOc. Ribonuclease III C terminal domain. T | 99.84 | |
| PRK14718 | 467 | ribonuclease III; Provisional | 99.84 | |
| PRK12371 | 235 | ribonuclease III; Reviewed | 99.84 | |
| COG4581 | 1041 | Superfamily II RNA helicase [DNA replication, reco | 99.83 | |
| KOG0948 | 1041 | consensus Nuclear exosomal RNA helicase MTR4, DEAD | 99.83 | |
| KOG3732 | 339 | consensus Staufen and related double-stranded-RNA- | 99.83 | |
| PRK12372 | 413 | ribonuclease III; Reviewed | 99.83 | |
| KOG1123 | 776 | consensus RNA polymerase II transcription initiati | 99.83 | |
| KOG0388 | 1185 | consensus SNF2 family DNA-dependent ATPase [Replic | 99.83 | |
| KOG0386 | 1157 | consensus Chromatin remodeling complex SWI/SNF, co | 99.83 | |
| KOG0353 | 695 | consensus ATP-dependent DNA helicase [General func | 99.82 | |
| PF00636 | 114 | Ribonuclease_3: Ribonuclease III domain; InterPro: | 99.82 | |
| COG4889 | 1518 | Predicted helicase [General function prediction on | 99.81 | |
| COG4098 | 441 | comFA Superfamily II DNA/RNA helicase required for | 99.81 | |
| KOG0391 | 1958 | consensus SNF2 family DNA-dependent ATPase [Genera | 99.81 | |
| KOG0947 | 1248 | consensus Cytoplasmic exosomal RNA helicase SKI2, | 99.81 | |
| KOG0951 | 1674 | consensus RNA helicase BRR2, DEAD-box superfamily | 99.8 | |
| KOG1002 | 791 | consensus Nucleotide excision repair protein RAD16 | 99.8 | |
| COG1643 | 845 | HrpA HrpA-like helicases [DNA replication, recombi | 99.78 | |
| KOG1817 | 533 | consensus Ribonuclease [RNA processing and modific | 99.77 | |
| KOG1000 | 689 | consensus Chromatin remodeling protein HARP/SMARCA | 99.77 | |
| PRK13104 | 896 | secA preprotein translocase subunit SecA; Reviewed | 99.76 | |
| PF00270 | 169 | DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 | 99.76 | |
| cd00268 | 203 | DEADc DEAD-box helicases. A diverse family of prot | 99.76 | |
| PRK12906 | 796 | secA preprotein translocase subunit SecA; Reviewed | 99.76 | |
| COG1198 | 730 | PriA Primosomal protein N' (replication factor Y) | 99.75 | |
| KOG0949 | 1330 | consensus Predicted helicase, DEAD-box superfamily | 99.75 | |
| KOG0920 | 924 | consensus ATP-dependent RNA helicase A [RNA proces | 99.73 | |
| KOG4439 | 901 | consensus RNA polymerase II transcription terminat | 99.72 | |
| cd02844 | 135 | PAZ_CAF_like PAZ domain, CAF_like subfamily. CAF ( | 99.72 | |
| PRK00102 | 229 | rnc ribonuclease III; Reviewed | 99.72 | |
| PF04851 | 184 | ResIII: Type III restriction enzyme, res subunit; | 99.71 | |
| PRK12904 | 830 | preprotein translocase subunit SecA; Reviewed | 99.71 | |
| TIGR00631 | 655 | uvrb excinuclease ABC, B subunit. This family is b | 99.71 | |
| KOG0922 | 674 | consensus DEAH-box RNA helicase [RNA processing an | 99.69 | |
| KOG0349 | 725 | consensus Putative DEAD-box RNA helicase DDX1 [RNA | 99.69 | |
| KOG0950 | 1008 | consensus DNA polymerase theta/eta, DEAD-box super | 99.69 | |
| TIGR02191 | 220 | RNaseIII ribonuclease III, bacterial. This family | 99.68 | |
| COG0553 | 866 | HepA Superfamily II DNA/RNA helicases, SNF2 family | 99.67 | |
| cd02843 | 122 | PAZ_dicer_like PAZ domain, dicer_like subfamily. D | 99.66 | |
| COG1203 | 733 | CRISPR-associated helicase Cas3 [Defense mechanism | 99.65 | |
| PRK13107 | 908 | preprotein translocase subunit SecA; Reviewed | 99.65 | |
| KOG0926 | 1172 | consensus DEAH-box RNA helicase [RNA processing an | 99.63 | |
| PRK05298 | 652 | excinuclease ABC subunit B; Provisional | 99.63 | |
| KOG1015 | 1567 | consensus Transcription regulator XNP/ATRX, DEAD-b | 99.63 | |
| COG0556 | 663 | UvrB Helicase subunit of the DNA excision repair c | 99.61 | |
| smart00487 | 201 | DEXDc DEAD-like helicases superfamily. | 99.61 | |
| PRK12899 | 970 | secA preprotein translocase subunit SecA; Reviewed | 99.6 | |
| KOG0924 | 1042 | consensus mRNA splicing factor ATP-dependent RNA h | 99.58 | |
| KOG0923 | 902 | consensus mRNA splicing factor ATP-dependent RNA h | 99.58 | |
| PRK12900 | 1025 | secA preprotein translocase subunit SecA; Reviewed | 99.55 | |
| cd00046 | 144 | DEXDc DEAD-like helicases superfamily. A diverse f | 99.52 | |
| PF00271 | 78 | Helicase_C: Helicase conserved C-terminal domain; | 99.49 | |
| TIGR01407 | 850 | dinG_rel DnaQ family exonuclease/DinG family helic | 99.48 | |
| cd00079 | 131 | HELICc Helicase superfamily c-terminal domain; ass | 99.45 | |
| COG1110 | 1187 | Reverse gyrase [DNA replication, recombination, an | 99.44 | |
| TIGR00596 | 814 | rad1 DNA repair protein (rad1). This family is bas | 99.42 | |
| PF14709 | 80 | DND1_DSRM: double strand RNA binding domain from D | 99.41 | |
| PF00176 | 299 | SNF2_N: SNF2 family N-terminal domain; InterPro: I | 99.34 | |
| PHA02701 | 183 | ORF020 dsRNA-binding PKR inhibitor; Provisional | 99.3 | |
| COG0571 | 235 | Rnc dsRNA-specific ribonuclease [Transcription] | 99.28 | |
| smart00490 | 82 | HELICc helicase superfamily c-terminal domain. | 99.26 | |
| KOG4150 | 1034 | consensus Predicted ATP-dependent RNA helicase [RN | 99.25 | |
| cd00048 | 68 | DSRM Double-stranded RNA binding motif. Binding is | 99.23 | |
| PRK12326 | 764 | preprotein translocase subunit SecA; Reviewed | 99.22 | |
| PRK07246 | 820 | bifunctional ATP-dependent DNA helicase/DNA polyme | 99.21 | |
| PRK08074 | 928 | bifunctional ATP-dependent DNA helicase/DNA polyme | 99.21 | |
| PRK13103 | 913 | secA preprotein translocase subunit SecA; Reviewed | 99.2 | |
| cd02845 | 117 | PAZ_piwi_like PAZ domain, Piwi_like subfamily. In | 99.18 | |
| smart00358 | 67 | DSRM Double-stranded RNA binding motif. | 99.17 | |
| PHA03103 | 183 | double-strand RNA-binding protein; Provisional | 99.17 | |
| KOG1001 | 674 | consensus Helicase-like transcription factor HLTF/ | 99.16 | |
| KOG0925 | 699 | consensus mRNA splicing factor ATP-dependent RNA h | 99.16 | |
| PRK14873 | 665 | primosome assembly protein PriA; Provisional | 99.15 | |
| KOG3769 | 333 | consensus Ribonuclease III domain proteins [Transl | 99.14 | |
| KOG3732 | 339 | consensus Staufen and related double-stranded-RNA- | 99.07 | |
| KOG1016 | 1387 | consensus Predicted DNA helicase, DEAD-box superfa | 99.06 | |
| PF07652 | 148 | Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR | 99.04 | |
| TIGR02562 | 1110 | cas3_yersinia CRISPR-associated helicase Cas3. The | 99.02 | |
| KOG0951 | 1674 | consensus RNA helicase BRR2, DEAD-box superfamily | 99.0 | |
| PRK12903 | 925 | secA preprotein translocase subunit SecA; Reviewed | 99.0 | |
| PF00035 | 67 | dsrm: Double-stranded RNA binding motif; InterPro: | 98.99 | |
| KOG0953 | 700 | consensus Mitochondrial RNA helicase SUV3, DEAD-bo | 98.99 | |
| PRK11747 | 697 | dinG ATP-dependent DNA helicase DinG; Provisional | 98.98 | |
| COG0610 | 962 | Type I site-specific restriction-modification syst | 98.95 | |
| PF02170 | 135 | PAZ: PAZ domain; InterPro: IPR003100 This domain i | 98.94 | |
| TIGR03117 | 636 | cas_csf4 CRISPR-associated DEAD/DEAH-box helicase | 98.83 | |
| PF14622 | 128 | Ribonucleas_3_3: Ribonuclease-III-like; PDB: 1O0W_ | 98.82 | |
| COG1199 | 654 | DinG Rad3-related DNA helicases [Transcription / D | 98.81 | |
| CHL00122 | 870 | secA preprotein translocase subunit SecA; Validate | 98.76 | |
| smart00488 | 289 | DEXDc2 DEAD-like helicases superfamily. | 98.74 | |
| smart00489 | 289 | DEXDc3 DEAD-like helicases superfamily. | 98.74 | |
| smart00535 | 129 | RIBOc Ribonuclease III family. | 98.7 | |
| PHA03103 | 183 | double-strand RNA-binding protein; Provisional | 98.66 | |
| PHA02701 | 183 | ORF020 dsRNA-binding PKR inhibitor; Provisional | 98.64 | |
| cd00593 | 133 | RIBOc RIBOc. Ribonuclease III C terminal domain. T | 98.63 | |
| PRK12902 | 939 | secA preprotein translocase subunit SecA; Reviewed | 98.61 | |
| PF00035 | 67 | dsrm: Double-stranded RNA binding motif; InterPro: | 98.61 | |
| PRK12901 | 1112 | secA preprotein translocase subunit SecA; Reviewed | 98.54 | |
| smart00358 | 67 | DSRM Double-stranded RNA binding motif. | 98.54 | |
| cd00048 | 68 | DSRM Double-stranded RNA binding motif. Binding is | 98.52 | |
| PF02399 | 824 | Herpes_ori_bp: Origin of replication binding prote | 98.47 | |
| KOG1042 | 845 | consensus Germ-line stem cell division protein Hiw | 98.46 | |
| KOG0383 | 696 | consensus Predicted helicase [General function pre | 98.3 | |
| PRK15483 | 986 | type III restriction-modification system StyLTI en | 98.25 | |
| cd02825 | 115 | PAZ PAZ domain, named PAZ after the proteins Piwi | 98.2 | |
| PF07517 | 266 | SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011 | 98.17 | |
| PF13086 | 236 | AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV | 98.0 | |
| KOG2777 | 542 | consensus tRNA-specific adenosine deaminase 1 [RNA | 97.9 | |
| TIGR00604 | 705 | rad3 DNA repair helicase (rad3). All proteins in t | 97.85 | |
| KOG0298 | 1394 | consensus DEAD box-containing helicase-like transc | 97.83 | |
| KOG3769 | 333 | consensus Ribonuclease III domain proteins [Transl | 97.71 | |
| PF13872 | 303 | AAA_34: P-loop containing NTP hydrolase pore-1 | 97.67 | |
| KOG0921 | 1282 | consensus Dosage compensation complex, subunit MLE | 97.52 | |
| KOG0952 | 1230 | consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup | 97.5 | |
| KOG0921 | 1282 | consensus Dosage compensation complex, subunit MLE | 97.49 | |
| PF14709 | 80 | DND1_DSRM: double strand RNA binding domain from D | 97.46 | |
| KOG4334 | 650 | consensus Uncharacterized conserved protein, conta | 97.46 | |
| cd02846 | 114 | PAZ_argonaute_like PAZ domain, argonaute_like subf | 97.39 | |
| KOG1803 | 649 | consensus DNA helicase [Replication, recombination | 97.39 | |
| KOG1802 | 935 | consensus RNA helicase nonsense mRNA reducing fact | 97.37 | |
| TIGR00376 | 637 | DNA helicase, putative. The gene product may repre | 97.36 | |
| PF09848 | 352 | DUF2075: Uncharacterized conserved protein (DUF207 | 97.34 | |
| PF12340 | 229 | DUF3638: Protein of unknown function (DUF3638); In | 97.33 | |
| PF02562 | 205 | PhoH: PhoH-like protein; InterPro: IPR003714 PhoH | 97.32 | |
| PF13604 | 196 | AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL | 97.18 | |
| PF13401 | 131 | AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S | 97.15 | |
| COG0653 | 822 | SecA Preprotein translocase subunit SecA (ATPase, | 97.08 | |
| PF06862 | 442 | DUF1253: Protein of unknown function (DUF1253); In | 97.06 | |
| PF13245 | 76 | AAA_19: Part of AAA domain | 96.89 | |
| PF03368 | 90 | Dicer_dimer: Dicer dimerisation domain; InterPro: | 96.88 | |
| PF00636 | 114 | Ribonuclease_3: Ribonuclease III domain; InterPro: | 96.83 | |
| COG3587 | 985 | Restriction endonuclease [Defense mechanisms] | 96.79 | |
| PF13307 | 167 | Helicase_C_2: Helicase C-terminal domain; PDB: 4A1 | 96.77 | |
| PRK10536 | 262 | hypothetical protein; Provisional | 96.67 | |
| KOG1132 | 945 | consensus Helicase of the DEAD superfamily [Replic | 96.67 | |
| COG3421 | 812 | Uncharacterized protein conserved in bacteria [Fun | 96.64 | |
| KOG2340 | 698 | consensus Uncharacterized conserved protein [Funct | 96.56 | |
| PLN03202 | 900 | protein argonaute; Provisional | 96.37 | |
| COG1875 | 436 | NYN ribonuclease and ATPase of PhoH family domains | 96.21 | |
| TIGR01448 | 720 | recD_rel helicase, putative, RecD/TraA family. Thi | 96.19 | |
| PRK06526 | 254 | transposase; Provisional | 96.15 | |
| PRK10875 | 615 | recD exonuclease V subunit alpha; Provisional | 96.05 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 95.95 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 95.79 | |
| TIGR01447 | 586 | recD exodeoxyribonuclease V, alpha subunit. This f | 95.75 | |
| KOG1131 | 755 | consensus RNA polymerase II transcription initiati | 95.68 | |
| PRK04296 | 190 | thymidine kinase; Provisional | 95.67 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 95.45 | |
| TIGR02768 | 744 | TraA_Ti Ti-type conjugative transfer relaxase TraA | 95.27 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 95.21 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 95.2 | |
| PRK08727 | 233 | hypothetical protein; Validated | 95.18 | |
| KOG1805 | 1100 | consensus DNA replication helicase [Replication, r | 95.07 | |
| PRK05703 | 424 | flhF flagellar biosynthesis regulator FlhF; Valida | 95.05 | |
| PRK08084 | 235 | DNA replication initiation factor; Provisional | 95.04 | |
| PRK08181 | 269 | transposase; Validated | 95.02 | |
| PF00580 | 315 | UvrD-helicase: UvrD/REP helicase N-terminal domain | 94.94 | |
| PRK06835 | 329 | DNA replication protein DnaC; Validated | 94.93 | |
| PRK06893 | 229 | DNA replication initiation factor; Validated | 94.87 | |
| PTZ00112 | 1164 | origin recognition complex 1 protein; Provisional | 94.84 | |
| PRK05642 | 234 | DNA replication initiation factor; Validated | 94.84 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 94.83 | |
| PRK13889 | 988 | conjugal transfer relaxase TraA; Provisional | 94.59 | |
| COG1939 | 132 | Ribonuclease III family protein [Replication, reco | 94.57 | |
| TIGR03420 | 226 | DnaA_homol_Hda DnaA regulatory inactivator Hda. Me | 94.39 | |
| PRK07952 | 244 | DNA replication protein DnaC; Validated | 94.38 | |
| KOG2777 | 542 | consensus tRNA-specific adenosine deaminase 1 [RNA | 94.37 | |
| TIGR03015 | 269 | pepcterm_ATPase putative secretion ATPase, PEP-CTE | 94.27 | |
| COG1419 | 407 | FlhF Flagellar GTP-binding protein [Cell motility | 94.23 | |
| smart00492 | 141 | HELICc3 helicase superfamily c-terminal domain. | 94.09 | |
| PRK00149 | 450 | dnaA chromosomal replication initiation protein; R | 94.04 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 94.02 | |
| KOG0989 | 346 | consensus Replication factor C, subunit RFC4 [Repl | 93.99 | |
| TIGR00604 | 705 | rad3 DNA repair helicase (rad3). All proteins in t | 93.71 | |
| PF13871 | 278 | Helicase_C_4: Helicase_C-like | 93.69 | |
| TIGR02928 | 365 | orc1/cdc6 family replication initiation protein. M | 93.55 | |
| smart00491 | 142 | HELICc2 helicase superfamily c-terminal domain. | 93.52 | |
| TIGR00362 | 405 | DnaA chromosomal replication initiator protein Dna | 93.44 | |
| PRK14087 | 450 | dnaA chromosomal replication initiation protein; P | 93.06 | |
| PRK14088 | 440 | dnaA chromosomal replication initiation protein; P | 92.97 | |
| PRK13826 | 1102 | Dtr system oriT relaxase; Provisional | 92.9 | |
| COG1474 | 366 | CDC6 Cdc6-related protein, AAA superfamily ATPase | 92.88 | |
| PRK00411 | 394 | cdc6 cell division control protein 6; Reviewed | 92.77 | |
| PF02456 | 369 | Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR | 92.7 | |
| KOG4334 | 650 | consensus Uncharacterized conserved protein, conta | 92.6 | |
| PRK14086 | 617 | dnaA chromosomal replication initiation protein; P | 92.55 | |
| PF05970 | 364 | PIF1: PIF1-like helicase; InterPro: IPR010285 This | 92.44 | |
| PF05621 | 302 | TniB: Bacterial TniB protein; InterPro: IPR008868 | 92.33 | |
| PF00308 | 219 | Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 | 92.31 | |
| PRK14956 | 484 | DNA polymerase III subunits gamma and tau; Provisi | 92.07 | |
| PRK14723 | 767 | flhF flagellar biosynthesis regulator FlhF; Provis | 92.05 | |
| PRK06731 | 270 | flhF flagellar biosynthesis regulator FlhF; Valida | 91.88 | |
| PRK12402 | 337 | replication factor C small subunit 2; Reviewed | 91.87 | |
| PRK00771 | 437 | signal recognition particle protein Srp54; Provisi | 91.84 | |
| PRK08116 | 268 | hypothetical protein; Validated | 91.7 | |
| KOG1513 | 1300 | consensus Nuclear helicase MOP-3/SNO (DEAD-box sup | 91.66 | |
| PRK11054 | 684 | helD DNA helicase IV; Provisional | 91.65 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 91.61 | |
| PRK12377 | 248 | putative replication protein; Provisional | 91.43 | |
| PF13177 | 162 | DNA_pol3_delta2: DNA polymerase III, delta subunit | 91.3 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 91.25 | |
| PRK12422 | 445 | chromosomal replication initiation protein; Provis | 91.25 | |
| PF01695 | 178 | IstB_IS21: IstB-like ATP binding protein; InterPro | 91.11 | |
| PRK08903 | 227 | DnaA regulatory inactivator Hda; Validated | 91.1 | |
| PRK10919 | 672 | ATP-dependent DNA helicase Rep; Provisional | 90.98 | |
| PRK12727 | 559 | flagellar biosynthesis regulator FlhF; Provisional | 90.96 | |
| PHA02533 | 534 | 17 large terminase protein; Provisional | 90.8 | |
| PRK12726 | 407 | flagellar biosynthesis regulator FlhF; Provisional | 90.7 | |
| cd01122 | 271 | GP4d_helicase GP4d_helicase is a homohexameric 5'- | 90.67 | |
| PRK14949 | 944 | DNA polymerase III subunits gamma and tau; Provisi | 90.66 | |
| TIGR03499 | 282 | FlhF flagellar biosynthetic protein FlhF. | 90.56 | |
| PF05876 | 557 | Terminase_GpA: Phage terminase large subunit (GpA) | 90.52 | |
| TIGR02881 | 261 | spore_V_K stage V sporulation protein K. Members o | 90.48 | |
| PRK12724 | 432 | flagellar biosynthesis regulator FlhF; Provisional | 90.4 | |
| PLN03025 | 319 | replication factor C subunit; Provisional | 90.38 | |
| PRK07764 | 824 | DNA polymerase III subunits gamma and tau; Validat | 90.34 | |
| PRK14964 | 491 | DNA polymerase III subunits gamma and tau; Provisi | 90.03 | |
| PRK13833 | 323 | conjugal transfer protein TrbB; Provisional | 89.49 | |
| PF00004 | 132 | AAA: ATPase family associated with various cellula | 89.48 | |
| PRK14960 | 702 | DNA polymerase III subunits gamma and tau; Provisi | 89.3 | |
| TIGR00959 | 428 | ffh signal recognition particle protein. This mode | 89.2 | |
| PRK05707 | 328 | DNA polymerase III subunit delta'; Validated | 89.16 | |
| COG1484 | 254 | DnaC DNA replication protein [DNA replication, rec | 88.94 | |
| COG3973 | 747 | Superfamily I DNA and RNA helicases [General funct | 88.86 | |
| COG0593 | 408 | DnaA ATPase involved in DNA replication initiation | 88.7 | |
| PF05707 | 193 | Zot: Zonular occludens toxin (Zot); InterPro: IPR0 | 88.48 | |
| PRK13894 | 319 | conjugal transfer ATPase TrbB; Provisional | 88.43 | |
| PRK11331 | 459 | 5-methylcytosine-specific restriction enzyme subun | 88.41 | |
| TIGR02782 | 299 | TrbB_P P-type conjugative transfer ATPase TrbB. Th | 88.34 | |
| cd00984 | 242 | DnaB_C DnaB helicase C terminal domain. The hexame | 88.28 | |
| COG2256 | 436 | MGS1 ATPase related to the helicase subunit of the | 88.17 | |
| PRK14721 | 420 | flhF flagellar biosynthesis regulator FlhF; Provis | 88.15 | |
| PHA03333 | 752 | putative ATPase subunit of terminase; Provisional | 88.09 | |
| TIGR01425 | 429 | SRP54_euk signal recognition particle protein SRP5 | 88.05 | |
| PRK07003 | 830 | DNA polymerase III subunits gamma and tau; Validat | 88.03 | |
| TIGR01074 | 664 | rep ATP-dependent DNA helicase Rep. Designed to id | 88.01 | |
| PRK04195 | 482 | replication factor C large subunit; Provisional | 87.63 | |
| COG1219 | 408 | ClpX ATP-dependent protease Clp, ATPase subunit [P | 87.56 | |
| PF08423 | 256 | Rad51: Rad51; InterPro: IPR013632 This domain is f | 87.38 | |
| PRK12323 | 700 | DNA polymerase III subunits gamma and tau; Provisi | 87.31 | |
| PRK14958 | 509 | DNA polymerase III subunits gamma and tau; Provisi | 87.29 | |
| PRK14963 | 504 | DNA polymerase III subunits gamma and tau; Provisi | 87.29 | |
| PRK10867 | 433 | signal recognition particle protein; Provisional | 87.24 | |
| TIGR02760 | 1960 | TraI_TIGR conjugative transfer relaxase protein Tr | 87.23 | |
| PRK11773 | 721 | uvrD DNA-dependent helicase II; Provisional | 87.01 | |
| PRK14959 | 624 | DNA polymerase III subunits gamma and tau; Provisi | 86.97 | |
| PRK08691 | 709 | DNA polymerase III subunits gamma and tau; Validat | 86.92 | |
| PHA03368 | 738 | DNA packaging terminase subunit 1; Provisional | 86.9 | |
| TIGR01075 | 715 | uvrD DNA helicase II. Designed to identify uvrD me | 86.84 | |
| PF03354 | 477 | Terminase_1: Phage Terminase ; InterPro: IPR005021 | 86.72 | |
| PRK08769 | 319 | DNA polymerase III subunit delta'; Validated | 86.62 | |
| PRK06921 | 266 | hypothetical protein; Provisional | 86.59 | |
| TIGR00064 | 272 | ftsY signal recognition particle-docking protein F | 86.42 | |
| TIGR02688 | 449 | conserved hypothetical protein TIGR02688. Members | 86.28 | |
| PRK14961 | 363 | DNA polymerase III subunits gamma and tau; Provisi | 86.2 | |
| PTZ00293 | 211 | thymidine kinase; Provisional | 86.06 | |
| KOG0344 | 593 | consensus ATP-dependent RNA helicase [RNA processi | 85.89 | |
| PF13173 | 128 | AAA_14: AAA domain | 85.81 | |
| PRK06964 | 342 | DNA polymerase III subunit delta'; Validated | 85.8 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 85.77 | |
| TIGR02785 | 1232 | addA_Gpos recombination helicase AddA, Firmicutes | 85.6 | |
| cd03115 | 173 | SRP The signal recognition particle (SRP) mediates | 85.53 | |
| PRK00440 | 319 | rfc replication factor C small subunit; Reviewed | 85.31 | |
| PRK14962 | 472 | DNA polymerase III subunits gamma and tau; Provisi | 85.29 | |
| KOG0442 | 892 | consensus Structure-specific endonuclease ERCC1-XP | 84.92 | |
| PRK14952 | 584 | DNA polymerase III subunits gamma and tau; Provisi | 84.88 | |
| PRK09112 | 351 | DNA polymerase III subunit delta'; Validated | 84.66 | |
| PRK08506 | 472 | replicative DNA helicase; Provisional | 84.55 | |
| PHA00729 | 226 | NTP-binding motif containing protein | 84.53 | |
| PRK06645 | 507 | DNA polymerase III subunits gamma and tau; Validat | 84.52 | |
| PRK14957 | 546 | DNA polymerase III subunits gamma and tau; Provisi | 84.47 | |
| PRK14712 | 1623 | conjugal transfer nickase/helicase TraI; Provision | 84.34 | |
| TIGR03117 | 636 | cas_csf4 CRISPR-associated DEAD/DEAH-box helicase | 84.29 | |
| COG1435 | 201 | Tdk Thymidine kinase [Nucleotide transport and met | 84.19 | |
| PRK07994 | 647 | DNA polymerase III subunits gamma and tau; Validat | 83.98 | |
| PRK08451 | 535 | DNA polymerase III subunits gamma and tau; Validat | 83.76 | |
| TIGR03600 | 421 | phage_DnaB phage replicative helicase, DnaB family | 83.71 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 83.62 | |
| KOG1807 | 1025 | consensus Helicases [Replication, recombination an | 83.62 | |
| PRK06090 | 319 | DNA polymerase III subunit delta'; Validated | 83.59 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 83.58 | |
| CHL00095 | 821 | clpC Clp protease ATP binding subunit | 83.4 | |
| PRK05563 | 559 | DNA polymerase III subunits gamma and tau; Validat | 83.4 | |
| PHA00350 | 399 | putative assembly protein | 83.39 | |
| PF06733 | 174 | DEAD_2: DEAD_2; InterPro: IPR010614 This represent | 83.09 | |
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 83.08 | |
| PRK09183 | 259 | transposase/IS protein; Provisional | 83.06 | |
| PRK14965 | 576 | DNA polymerase III subunits gamma and tau; Provisi | 83.03 | |
| PRK14948 | 620 | DNA polymerase III subunits gamma and tau; Provisi | 82.84 | |
| PLN03187 | 344 | meiotic recombination protein DMC1 homolog; Provis | 82.7 | |
| TIGR03689 | 512 | pup_AAA proteasome ATPase. In the Actinobacteria, | 82.5 | |
| PRK05896 | 605 | DNA polymerase III subunits gamma and tau; Validat | 82.14 | |
| PRK14955 | 397 | DNA polymerase III subunits gamma and tau; Provisi | 81.94 | |
| PRK05748 | 448 | replicative DNA helicase; Provisional | 81.71 | |
| KOG0349 | 725 | consensus Putative DEAD-box RNA helicase DDX1 [RNA | 81.68 | |
| PF11469 | 120 | Ribonucleas_3_2: Ribonuclease III; InterPro: IPR02 | 81.6 | |
| PRK08939 | 306 | primosomal protein DnaI; Reviewed | 81.56 | |
| TIGR02639 | 731 | ClpA ATP-dependent Clp protease ATP-binding subuni | 81.45 | |
| COG1702 | 348 | PhoH Phosphate starvation-inducible protein PhoH, | 81.43 | |
| KOG0739 | 439 | consensus AAA+-type ATPase [Posttranslational modi | 81.38 | |
| PRK06871 | 325 | DNA polymerase III subunit delta'; Validated | 81.35 | |
| TIGR00767 | 415 | rho transcription termination factor Rho. Members | 81.32 | |
| PF01637 | 234 | Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 | 81.2 | |
| PF14617 | 252 | CMS1: U3-containing 90S pre-ribosomal complex subu | 81.14 | |
| PRK14951 | 618 | DNA polymerase III subunits gamma and tau; Provisi | 80.97 | |
| TIGR00678 | 188 | holB DNA polymerase III, delta' subunit. At positi | 80.91 | |
| COG4626 | 546 | Phage terminase-like protein, large subunit [Gener | 80.89 | |
| TIGR01073 | 726 | pcrA ATP-dependent DNA helicase PcrA. Designed to | 80.48 | |
| PRK06647 | 563 | DNA polymerase III subunits gamma and tau; Validat | 80.46 | |
| PRK14950 | 585 | DNA polymerase III subunits gamma and tau; Provisi | 80.4 | |
| PRK07471 | 365 | DNA polymerase III subunit delta'; Validated | 80.29 | |
| PRK13709 | 1747 | conjugal transfer nickase/helicase TraI; Provision | 80.2 | |
| KOG3792 | 816 | consensus Transcription factor NFAT, subunit NF90 | 80.13 |
| >KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-62 Score=633.60 Aligned_cols=1294 Identities=23% Similarity=0.280 Sum_probs=779.4
Q ss_pred HHHhhcCCceEEEecCCCCCccchHHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCC-CcHHHHH
Q 000384 112 VIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGN-HPYTKIM 190 (1590)
Q Consensus 112 ~i~~~~~~~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~-~~~~~im 190 (1590)
....++...+...++......|+..+|.......++.++|+..+++.+.+++..+.+..++++||||+.... |++...|
T Consensus 6 ~~~~~~~~~~l~~~~~e~~~~~~s~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (1606)
T KOG0701|consen 6 FKSTHTPLKVLEVFPLESRGLSTSKRHKQECTHHHVSILTAIGALNLLFGGYLLLSDRVLLVFDECHNLVMDAHPRRHFM 85 (1606)
T ss_pred hhhcccccccccccccccccccchhhhhhhhhhcccchhhhhhhhhhhcCchhhhhhhhhhccccccccccccCcchhhh
Confidence 344556677777777777777776688888899999999999999999999999999999999999999865 7888877
Q ss_pred HHHHhcC-CCCCcEEEEeccCCccCCCCChhcHHHHHHHHHhhcCCeeEeecchhhhhhcccCcceeeEeccCCCCcccc
Q 000384 191 KEFYHKS-DNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSD 269 (1590)
Q Consensus 191 ~~~~~~~-~~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~~~~~~~~l~~~~~~p~~~~~~y~~~~~~~~~ 269 (1590)
...-... ...||++|+||.+.+.. .........+..+|..+.+.+.+.++...+..+...|.+.+...-....
T Consensus 86 ~~~~~~~~~s~pr~~~~~a~~~~~~--~~~~~~~~~~k~~e~~~~~~~~t~~~~v~~~~~t~~~~~vm~~~~~~~~---- 159 (1606)
T KOG0701|consen 86 DLSSSGPSFSVPRILGLTASLLNDK--FWLEELDEDLKKLEYLSESRIETASDLVSLVRYTSNPFEVMVCCLDAEY---- 159 (1606)
T ss_pred hcccccCCCCcchhhhccCCCcCCC--cchhhhhHHHHHHHHHHHhChhhhccceEeeeccCCCeEEeeehhhhhh----
Confidence 7543221 36799999999998654 5566777888999999988888888887777788777776644311100
Q ss_pred hhhhHHHhhhhhhhhHHHHHhhhhhhhccchh-hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHhHHHHHH
Q 000384 270 LKGKLEVSWSKFDASLSKLQGSQLNCYKDMDD-KHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECE 348 (1590)
Q Consensus 270 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~ 348 (1590)
.+..+ ..+ .....+ ..++ .+.+. +.........-..|+||....+.....++........
T Consensus 160 ----~~~~~-~~~--------~~~~~~-~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 220 (1606)
T KOG0701|consen 160 ----GPLLI-NKD--------KLICVF-LIPDCIVITF-----QKQYTLLKVLFKKGPWCSVKWIAQDVRELPKVIAGNP 220 (1606)
T ss_pred ----hhhhc-ccc--------ceeEEe-ccCcceeeec-----cccchhhhhhcccCcchhhHHHHHHHhhcceeecCCH
Confidence 00000 000 000000 0000 00000 0011112233456677766555444433322110000
Q ss_pred ---HH-----hhhhHHHHHHHHHHHHHHhhhcCcchh--hhcc--ccCCccccccCCCCCHHHHHHHHHHHhcCCCCCcE
Q 000384 349 ---IY-----RQSSLQCKYFLEEVLHVIGSALPLADK--IFLD--FGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVL 416 (1590)
Q Consensus 349 ---~~-----~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~--~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~k 416 (1590)
.+ .........-+....+........... ..+. ...+...-+ .....+-+.. +.++.. .-..
T Consensus 221 ~~~~~~~e~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~l~-~~~~~~~v~k--~~l~~~---~~l~ 294 (1606)
T KOG0701|consen 221 AELHYCEEVFSDSELRFLMSIPRLLERLRDSKHEYIHQFEVLRKYEPHDVFRLI-HESVCPLVDK--EYLEKI---ETLS 294 (1606)
T ss_pred HHhhhhhhhcCcHHHHHHHhHHHHHHHhhhcchhhhcccceeeeecccccceee-hhhcCchhhH--HHHHhh---hhhh
Confidence 00 000000000001111111110000000 0000 000000000 0000111111 122221 1246
Q ss_pred EEEEEehHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCC--C---CCCHHHHHHHHHHhcCCCceEEEEcccccccccCC
Q 000384 417 CIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSV--D---ALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVP 491 (1590)
Q Consensus 417 ~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~--~---~~~~~~r~~vl~~Fr~g~~~vLVaT~vleeGIDip 491 (1590)
+||||+.+.++..+.+++... .-..+..+.|..... . ......|.+++..|+..++|+|++|++++||+|++
T Consensus 295 ~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~ 371 (1606)
T KOG0701|consen 295 GIIFVDQRYTAYVLLELLREI---FSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVP 371 (1606)
T ss_pred heeecccchHHHHHHHHHHHh---hccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchh
Confidence 799999999999999988874 223444466643211 0 11223478999999999999999999999999999
Q ss_pred CccEEEEccCCCCHHHHHHHhccccccCceEEEEeccchHH-hhhhhhcCChhhhhhhccccccccceee-cCCCceecc
Q 000384 492 NCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERSERS-VTDTALSRDPEACFLKACTYVKTKSYIV-ESTGASVTT 569 (1590)
Q Consensus 492 ~~~~VI~fD~p~s~~~yiQr~GRA~R~gs~~ivlv~~~E~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~v-~~tga~lt~ 569 (1590)
.|+.|+++|.|...++|+|+.||+++.++.++++....... +.. +-...... ...+++.. ...|
T Consensus 372 ~~~~~~~~~~~~~~~~~vq~~~r~~~~~~~~~i~~~t~~~~~~~~------~s~~~~~~---i~~~~l~~~~~~~----- 437 (1606)
T KOG0701|consen 372 KCNLVVLFDAPTYYRSYVQKKGRARAADSYLVILGETLSAVSLKN------PSYAYTEQ---IPRPQLFLRLDAN----- 437 (1606)
T ss_pred hhhhheeccCcchHHHHHHhhcccccchhhHHHHHhhhhhhhhcC------hhHhHHhh---cccchhhcccccc-----
Confidence 99999999999999999999999999999988887653322 221 11100000 01122221 1111
Q ss_pred cChHHHHHHHhhhCCCCCCCCCcceEEEEecCCeEEEEEEccCCCCcc-eeecCCccCHHHHHHHHHHHHHHHHHhcCCC
Q 000384 570 DSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQ-TIVGPTSRNKNLSKQLVCLEACEKLHQVGAL 648 (1590)
Q Consensus 570 ~~ai~ll~~yc~~Lp~d~~~~~~P~~~~~~~~~~~~~~v~LP~~~~l~-~~~g~~~~sk~~Ak~~AAf~Ac~~L~~~g~l 648 (1590)
++.||+..-... ...+..+|.||.++|.+ .+.| +|.+||+.|++
T Consensus 438 ------v~~~~~~~e~~~-------------~~~~~~~v~~~~~~p~~~~~~~----------------~~~~l~~~~~~ 482 (1606)
T KOG0701|consen 438 ------VNKYCARAELLK-------------HVPFLSTVVLPVNSPLKMCIVG----------------LCLKLHKIGEL 482 (1606)
T ss_pred ------hHHHHHHHHhcc-------------CCCcceeEEEecCchHHHHHHH----------------hHHHHHHhhhh
Confidence 889998643211 12345678899888876 3444 99999999999
Q ss_pred CCCCCCCCCCccc----ccccccc---CCCCCCCCCccccccccccccccccCcccCCCceeEEEEEEEee--eccccc-
Q 000384 649 NDHLLPSVEEPSE----NNLISKK---NESLPGAGTTKRKELHGTTPIRALSGRWGEKCGVILHAYKFNFA--CSIVTE- 718 (1590)
Q Consensus 649 dd~L~P~~~~~~~----~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~--~~~~~~- 718 (1590)
||+|+|.++++.. -+....+ ....+.+|+++|++.|.+..++.+.+..... +.+++.|.+... ++.++.
T Consensus 483 d~~~~~~gk~~~~~~~~~~~~~~ee~~~~~~~~~~~s~~~~~~~k~~~~~~~~~~~~~-~~~c~~~~~~~~~~~~~~e~~ 561 (1606)
T KOG0701|consen 483 DDCLHPKGKEPKACLEEVDTEEEEEVLQGFEPRPGSSKRRQQYLKHIARERNDSVPKA-DQPCYLYVIGLELTMPLPEER 561 (1606)
T ss_pred hhhhcccccchHHhhhhhccccchhhccccCCCCCcccccccccchhHHHhcccccCC-CCceeeeeeccceecCCchhc
Confidence 9999999987521 1110000 1234578899999988887777666555432 455566654422 211111
Q ss_pred ------------cccceEEeeccccCCcCCCceeeEeeecceeEEEEecCcc-cccCHHHHHHHHHHHHHHHHHhhhhch
Q 000384 719 ------------IYSGFVLLIESELDNDVGNFELELYLVSKTVKATVSSSGQ-VHLDADQMSKAKCFQELFFNGLFGKLF 785 (1590)
Q Consensus 719 ------------~~~~~~ll~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~f~~~~f~~~~~~~~ 785 (1590)
....|++++-..+|. ...++++...|.++++...... ..+..++++....|+..+|..+.. +
T Consensus 562 n~~~r~~~~~~~~~~~~~~l~~~~i~~---~~~~~~a~~sG~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~v~~-~- 636 (1606)
T KOG0701|consen 562 NFERRKLYPPEDLTYCFGILTAKLIPK---IPHFPVATRSGEVKVSLLLAFSEALVKSEQLDEIQEFLNYIFTEVLR-L- 636 (1606)
T ss_pred ccccccccCchhhhhhhcccchhhhcc---cccccceeccCchhHHHHHhhhhhhcchhhccCcchhcccchhhhhh-h-
Confidence 123577777777775 3356777777766665443221 235677888888899988888764 2
Q ss_pred hcccCCCCcchhhcccccCCCCCCceEEEEeccccccCCCCCcccccCccccccchhhHhhhhccccccccCCCCCCCCC
Q 000384 786 VKSKSSGSREFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCASVVEFIKEKSFLGAAQCNNNGGNSSP 865 (1590)
Q Consensus 786 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Pl~~~~~~~~~~~~IDw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 865 (1590)
.+.. .+| +.. .....+.++|++... ....+.|+|.+|+.+..-..+ ...|+.
T Consensus 637 --~~~~--~~~---~~~----~~~l~~~llp~~~~~--~~~~~~i~~k~l~~iv~~~~~---------------~~~~~~ 688 (1606)
T KOG0701|consen 637 --AKIN--LEF---DPK----TAELIETLLPLNVLA--DKRAIIIVRKFLEAIVAPSDL---------------MPIPSK 688 (1606)
T ss_pred --hccc--ccc---CCc----hhhHHHHhccccccc--ccchhhhHHHHHHHHhCcccc---------------cCCCCh
Confidence 1111 122 110 123457788876432 112367888888653321111 111111
Q ss_pred CCCCCCCCCCCCCcceeccCCCcCcccccCcEEEeccC-CceEEEEEecCCCCCCCCCCCCCCCCCchHHHHHhhhcccc
Q 000384 866 CRTSPCKTGCHGKDVIHLANGSVDAKNLKDMVVLAIHT-GRIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIV 944 (1590)
Q Consensus 866 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~vV~~~~~-~~~y~v~~i~~d~~p~spf~~~~~~~~~ty~~yy~~k~~~~ 944 (1590)
+.. .....++..++++++++-... ..-|++.++.+...|.+.|++. .+.|+..||..+|+..
T Consensus 689 ~~~--------------~~~~~f~~~~~~~~~~~~rn~~~~~~~~~~v~~~~~pss~~~g~---~~~~~~~v~~~~~~~~ 751 (1606)
T KOG0701|consen 689 DEV--------------RKAKYFDGEDSQDAVGMYRNDDQPQFYVAEVLPLLAPSSLFPGL---DYETFNEVYRFKYALT 751 (1606)
T ss_pred hhh--------------hhhhhcccccchhhhhhhhcccccceeeeeeeeeccchhcCCCc---chheeeeeeeccccch
Confidence 110 112345666777877772221 2356999999999999999965 7999999999999999
Q ss_pred ccCCCCceEEeeccCCccccccccCCCCCCCCCCCCCCCCCCCCceeeeccccceeccccHHHHHHHhhcHHHHHHHHHH
Q 000384 945 LIHPGQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESL 1024 (1590)
Q Consensus 945 i~~~~QPlL~~~~~~~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pe~~~~~~~p~~~~~~~~~lPsi~~rl~~~ 1024 (1590)
+....||++.++....|.|++.++................++ ....-.-+-..+++.++++|+.+-++|.+++|++..
T Consensus 752 i~~~~q~~~~~~~~~s~l~~~~~r~~~~~~~~l~~~s~~~e~--~~~es~~~~~~~h~~~~s~~~~~~~~p~~v~~v~~t 829 (1606)
T KOG0701|consen 752 ITSLNQSLLDVDHTSSRLNLLVPRGDNQKGSALPNSSSETER--LKDESLEHSLIIHPALASLWRRAVCLPEILYRVLLT 829 (1606)
T ss_pred hhhccccccccccchhhhcccCchhhccccceeecccchhhh--hhHHHhhccCCCCcCcchhhhhhccCcchheeeccc
Confidence 999999999999999999999998644332111110000000 000011111237888999999999999999988432
Q ss_pred HhHHHHHH------------HHh-cccC----------------------------------------------------
Q 000384 1025 MLASQLRE------------EIN-CHSR---------------------------------------------------- 1039 (1590)
Q Consensus 1025 l~a~~l~~------------~l~-~~~~---------------------------------------------------- 1039 (1590)
++..+. .+. ..|.
T Consensus 830 --g~~~s~~ta~~li~~~~~~i~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~av~l~~~~~~~ 907 (1606)
T KOG0701|consen 830 --GALVSLSTAVDLIPHDFSSILSKSFEKEASKSDKNKDEYSCDLALPKENPVKQVLGKANQLDKVNQQAVELQECIQLH 907 (1606)
T ss_pred --cceeeeecccchhhhhhhhccchhhccccccCCCCccccceeecccCCCchhhhhchhhhhhHHHhhhhhhhhhhhhh
Confidence 111100 000 0000
Q ss_pred --------------------------------------------------------------------------------
Q 000384 1040 -------------------------------------------------------------------------------- 1039 (1590)
Q Consensus 1040 -------------------------------------------------------------------------------- 1039 (1590)
T Consensus 908 ~~~~~~d~~~~n~~~~~~~~~~~~~i~~a~~p~~~~~~~~~~~~~s~~~~n~l~~~~~~~~~~~s~~~~~~~~~E~~e~i 987 (1606)
T KOG0701|consen 908 EVGALDDHLVFNKGVADQVLAKRESISLATRPELVSPFIPEPPTTSHLISNRLSPSSPSNSDLNSLLPNKRSDWEAVEKI 987 (1606)
T ss_pred cccccccccccCccccchhhhhccccccccCcccccccccCCchhhhhhhhhcCccCCCCCCcccccccccccccccccc
Confidence
Q ss_pred -C----CCCC-------hHHHHHhhcCCCCCCCCCcchhhhhhhhhHhHHHHHHHHhhCCCCCcchhHHHHHHhhchHHH
Q 000384 1040 -N----FHIP-------SSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTL 1107 (1590)
Q Consensus 1040 -~----~~~~-------~~lll~AlT~~s~~~~~n~ErLE~LGDs~Lk~~~s~~l~~~~p~~~eg~ls~~r~~~v~N~~L 1107 (1590)
| |.+. .++|+||||+++|.+.++|||||+|||++||++++.+||.+||..+||+|+.+|+..++|.+|
T Consensus 988 ~n~~~~Fs~~~~~i~~~~s~LLEAlT~~~~~~s~s~Erle~Lgds~Lk~avsr~l~L~ypd~~Egqls~lr~~~~~~~nl 1067 (1606)
T KOG0701|consen 988 LNFRYVFSISLASIALSTSLLLEALTTSSCQDSFSLERLELLGDSLLKLAVSRHLFLTYPDLDEGQLSRLRDVNVSNDNL 1067 (1606)
T ss_pred cccceeccccccccccchhHHHHHhhcCccccchhHHHHHhhHHHHHHHHHHHHHHHhCCcccchhHHHHHHhcccccch
Confidence 0 0011 379999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCccccccccCCCCcccCCCccCCCCCCCCCCCCc------ccccCCCcccccccceecCCcCCCC--ccccc
Q 000384 1108 HKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDT------LEVPLDGKFFTQDTKVVVGKPCDMG--HRWMG 1179 (1590)
Q Consensus 1108 ~~~a~~~gl~~~i~~~~f~~~~w~pp~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 1179 (1590)
+++|+..||++|++.+.|.|..|..|+.....+.+|+++... .++....+...+....+.+..+..+ +.|..
T Consensus 1068 ~~la~~~gl~~~~~~~~fep~~~~~p~~~~~~~~~~k~~~~~~~~~~~~e~~e~~~df~e~~~~~~~~~~~~~~~~~~~~ 1147 (1606)
T KOG0701|consen 1068 ARLAVKKGLYSYLRHEGFEPSRWWVPGQLDVNNVDCKDLSGDQNYILYKELDEKIKDFQEAMEKEDGDSRSKGGDHDWLA 1147 (1606)
T ss_pred hhhhhcccchhhcccccccccccccccccccccccccccccccccccccchhhhhhHHHHhhhccCCcccccccccceec
Confidence 999999999999999999998655555566677777765221 1111111111112222333444444 68999
Q ss_pred cchhhhHHHHHHHHhhhccChhHHH-----HHHHHhCCCccccchhhhhhhhcccccccCCChHHHHHHHHHhCC--ccC
Q 000384 1180 SKTIADCAEALIGAYYVGGGLIAAL-----YMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGY--EFT 1252 (1590)
Q Consensus 1180 ~K~iAD~vEAliGA~~~~~G~~~a~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~lgy--~F~ 1252 (1590)
.|++||++|||+||+|+|||...+. ++|+|.++.+++++............+........+..+|..++| +|.
T Consensus 1148 ~ks~adl~eaLlga~~vD~~~~~~~~~~~~~~lk~~~~~~dy~~~e~~~~~~~~~~~s~~~~~~~~~~ler~l~~~~~~~ 1227 (1606)
T KOG0701|consen 1148 PKSPADLLEALLGAIYVDGGLLETFETIGDSFLKWSITNYDYDTLEPKHAGKLSFRRSKIVKKKNLDRLERELGLKFKFL 1227 (1606)
T ss_pred CCCHHHHHHHHHHhhhhhccchhhhhHHHHHHHhhhhhhhhhhcccccchhhhhhhhhhHhhhhhHHHHHHhhcccchhh
Confidence 9999999999999999999999888 999999999988877665444333333333334467899999999 999
Q ss_pred CHHHHHHHHccCCCCC--CcchHHH----------------HHHhcccChHHHHHHH-----------------------
Q 000384 1253 VKFLLQEAITHASVQE--FYCYQNL----------------YKHLQHCSTLLLSQIT----------------------- 1291 (1590)
Q Consensus 1253 ~~~LL~~AlTH~S~~~--~~~ye~L----------------~~~~~~~~~~~~~~i~----------------------- 1291 (1590)
...++.+|++|+|... ..+||.+ +.-+.....+.++.+.
T Consensus 1228 ~~~l~~~~~~~~s~~~~~ld~~erl~~~~d~vld~l~~~~~~~~~~~~~~~~lt~~~~~~v~~l~e~~~~~~v~~~l~~~ 1307 (1606)
T KOG0701|consen 1228 EAALLVQAFIHCSLRAEGLDATERLEFLGDAVLDKLSDKHPFEVFIRLDGGELTDLREAGVNTLNENDLNVKVPKSLPYN 1307 (1606)
T ss_pred hhhcchhhcccccccccccchHHHHHhhHHHHHHHHHHhhhHhhhhcccCcchhhhhhhhhhhhhhcccccccCCcceee
Confidence 9999999999999986 4557722 2223333333333222
Q ss_pred -------------HHHHcCCCCCCCC-C---CCCCCCCCchhhhHHHHHHhceeecCCCChHHHHHHHHh-----hhccc
Q 000384 1292 -------------EYVKSFPKPGETT-D---SGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKP-----ILSPI 1349 (1590)
Q Consensus 1292 -------------~~~~~~~~~~~~~-~---~~~~~~~~k~l~D~~Ea~iGAi~lDsg~~~~~~~~~~~~-----~l~~~ 1349 (1590)
.++..+.+..... + .....+.|+.++|+.|+++++.++|.+..+-.+|++..+ .+++.
T Consensus 1308 l~~~s~~~~K~i~d~v~sli~~~~~~~~~~s~l~~~~~~~~l~~i~es~~~~~~~~~~~~l~~~~~~e~~l~y~f~~~~~ 1387 (1606)
T KOG0701|consen 1308 LLDQSSVLEKSIADSVEALIGASLSEGGPSSALLFMDWPPILLDIPESIASPDSIDELRQLLSFGKFEEKLNYRFKLKPY 1387 (1606)
T ss_pred ehhhccCccchHHHHHHHhhhhhhhccCCCccccccccccccccccccccccchhHHHHHHHHHHhhhcccchhhhhhhc
Confidence 2222211111100 0 112346689999999999999999999988889988877 67777
Q ss_pred cCCCCCCCChhhHHHHHHHhcCCcceeeeeeeCceEEEEEEEEEcCeEEEEEEEeCCHHHHHHH---HHHHHHHH-hhhh
Q 000384 1350 VTPDKLELPPLRELIELCDSLGYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGK---AASQLLKK-LEVC 1425 (1590)
Q Consensus 1350 i~~~~~~~~P~~~L~e~~~~~~~~~~~~~~~~g~~~~~~~~v~~~g~~~~~~g~g~skk~Ak~~---AA~~AL~~-L~~~ 1425 (1590)
+...+...+|.......|.+...++...+...+-..+-...+...+ .|...-.+.|+.. .|..|++. +.++
T Consensus 1388 l~~a~th~s~~~~~~~~C~qrleflgd~vld~~it~hl~~~~~~~s-----p~~~td~rsa~vnn~~~a~~av~~~~~K~ 1462 (1606)
T KOG0701|consen 1388 LTQATTHASYIYNRITDCYQRLEFLGDAVLDYLITKHLYEDPRQHS-----PGVLTDLRSALVNNTIFASLAVKADLHKF 1462 (1606)
T ss_pred ccccccccccccCccchhhhhHHHhHHhhhhhhhhhcccccccccC-----chhhhhhhhHhhccccchhhHHhhcchhH
Confidence 7777777788888888887655433211111100000001111111 1222222222222 22222222 1111
Q ss_pred hhhcccCCCCCCcCCC-------ccccCCCCCCCCCcccccccCccccccCCCccccccccc--CCCccccccccccCCc
Q 000384 1426 EKRISKGASNTGKLGD-------DCRQTTKEDLPEPPSCKRQKGTEAAIPAGDSCKKAYCMT--VGTPVVAPINMKKGGP 1496 (1590)
Q Consensus 1426 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 1496 (1590)
.. ...+.+.+ .+.+.+..... ..++-++. ...++...+.......
T Consensus 1463 ~~------~~~~~l~~~I~~~v~~~~q~~~~~~~--------------------~~~edievpKa~gdi~esiagai~~d 1516 (1606)
T KOG0701|consen 1463 II------AASPGLIHNIDRFVSFQLQSNLDSLF--------------------GWEEDIEVPKALGDIFESIAGAIKLD 1516 (1606)
T ss_pred HH------hhccccccchHHHHHHHHhhccccCC--------------------CchhhcccchhhhhhhhcccceeecC
Confidence 00 01111111 11110000000 00000000 0113444555556778
Q ss_pred hhhHHHHHHhCCCCCCceeEeecccccccccccCCcccccce---------eeEEEEEEEecCCceEEEeCCCCCCccch
Q 000384 1497 RTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFS---------SFVSKITLHIPEFGNVECNGDPRADKKSS 1567 (1590)
Q Consensus 1497 k~~L~e~~~~~~~~~P~y~~~~~~~~~~~~~~~Gp~h~~~~~---------~F~~~v~i~~~~~~~~~~~g~~~~sKK~A 1567 (1590)
++-+.+.|..+.|++|.+.++++ .++.|.+.+. .+.+.+++.+.+.+.+...|....++|.|
T Consensus 1517 sg~~~~~~~~~~~a~p~~s~~~E---------~~~~h~~~~~~~~~~k~~d~~~~~~tv~~~~~~~~~~~g~~~~~aK~s 1587 (1606)
T KOG0701|consen 1517 SGNMMEPCIEKFWALPPRSPIRE---------LLELHPERALFGKCEKVADAGKVRVTVDVFNKEVFAGEGRNYRIAKAS 1587 (1606)
T ss_pred cccccchHhhcCcCCCCccchhh---------hccccceeeccchhhhhhhccceEEEEEecccchhhhcchhhhhhhhh
Confidence 89999999999999999999998 7888863221 13344555555445555557666666777
Q ss_pred hhhHHHHHHHHHHHcC
Q 000384 1568 FDSAALIMLHELERQG 1583 (1590)
Q Consensus 1568 ~~~AA~~~l~~l~~~~ 1583 (1590)
+..||.+.+..+..++
T Consensus 1588 ~~k~A~~ll~~~~~~~ 1603 (1606)
T KOG0701|consen 1588 AAKAALKLLKKLGLQK 1603 (1606)
T ss_pred HHHHHHHHHHHhhhhh
Confidence 6666666666665544
|
|
| >COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-51 Score=467.77 Aligned_cols=433 Identities=27% Similarity=0.376 Sum_probs=290.0
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHhcCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHh
Q 000384 36 SSSTNSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRV 115 (1590)
Q Consensus 36 ~~~~~~~~~~pR~yQ~e~le~~~~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~ 115 (1590)
...-.+..+++|.||..+...++.+|++|++|||.|||+||++.|...+. +.++ ++|||+||++||.|+++.+++
T Consensus 6 ~~~i~p~~ie~R~YQ~~i~a~al~~NtLvvlPTGLGKT~IA~~V~~~~l~----~~~~-kvlfLAPTKPLV~Qh~~~~~~ 80 (542)
T COG1111 6 HPLIKPNTIEPRLYQLNIAAKALFKNTLVVLPTGLGKTFIAAMVIANRLR----WFGG-KVLFLAPTKPLVLQHAEFCRK 80 (542)
T ss_pred ccccccccccHHHHHHHHHHHHhhcCeEEEecCCccHHHHHHHHHHHHHH----hcCC-eEEEecCCchHHHHHHHHHHH
Confidence 44556778999999999999999999999999999999999999988776 3444 799999999999999999999
Q ss_pred hcCC---ceEEEecCCCCCccchHHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCCCcHHHHHHH
Q 000384 116 HTDF---EVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKE 192 (1590)
Q Consensus 116 ~~~~---~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~~~~~~im~~ 192 (1590)
.+++ .+..++|....+. ....|. +.+|+|+|||++.+.+.+|.+.+.++.+||||||||+.|+++|..++++
T Consensus 81 v~~ip~~~i~~ltGev~p~~-R~~~w~----~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~ 155 (542)
T COG1111 81 VTGIPEDEIAALTGEVRPEE-REELWA----KKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKE 155 (542)
T ss_pred HhCCChhheeeecCCCChHH-HHHHHh----hCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHH
Confidence 9986 5778999887654 344565 7899999999999999999999999999999999999999999999997
Q ss_pred HHhcCCCCCcEEEEeccCCccCCCCChhcHHHHHHHHHhhcCCeeEee--cchhhhhhcccCcceeeEeccCCCCcccch
Q 000384 193 FYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTI--EDKTEMEVFVPSAKESCRFYDQSKFCGSDL 270 (1590)
Q Consensus 193 ~~~~~~~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~~~--~~~~~l~~~~~~p~~~~~~y~~~~~~~~~l 270 (1590)
+ ......|+||||||||... .+.+.++...|+-.-..+ .+..++..|+...+...+.-+ +
T Consensus 156 y-~~~~k~~~ilgLTASPGs~---------~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~--------l 217 (542)
T COG1111 156 Y-LRSAKNPLILGLTASPGSD---------LEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVD--------L 217 (542)
T ss_pred H-HHhccCceEEEEecCCCCC---------HHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEecc--------C
Confidence 5 4455679999999999854 355777777777533322 244567777766544333322 1
Q ss_pred hhhHHHhhhhhhhhHHHHHhhhhh-hhccchh---h--HHHHH-H-------------HHHHHH------HHHHHHHHHh
Q 000384 271 KGKLEVSWSKFDASLSKLQGSQLN-CYKDMDD---K--HKTLR-K-------------QLSDYH------AKILYCLDEL 324 (1590)
Q Consensus 271 ~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~---~--~~~~~-~-------------~l~~~~------~~~~~~~~~l 324 (1590)
...+......+...+......+.+ .+..... + +-.+. . ++...+ ......++..
T Consensus 218 p~e~~~ir~~l~~~l~~~Lk~L~~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletq 297 (542)
T COG1111 218 PEEIKEIRDLLRDALKPRLKPLKELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQ 297 (542)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 111222211111111111111100 0000000 0 00000 0 000000 0011111222
Q ss_pred hhhHHHHHHHHHHHHhHhHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcCcchhhhccccCCccccccCCCCCHHHHHHHH
Q 000384 325 GLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQ 404 (1590)
Q Consensus 325 g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~ 404 (1590)
|.-..++++..+.+.-.. .............+....+..+. .....+..+||+..+.+
T Consensus 298 Gi~~~~~Yl~~l~e~~~~----~~sk~a~~l~~d~~~~~al~~~~------------------~~~~~~v~HPKl~~l~e 355 (542)
T COG1111 298 GIRPFYQYLEKLEEEATK----GGSKAAKSLLADPYFKRALRLLI------------------RADESGVEHPKLEKLRE 355 (542)
T ss_pred ChHHHHHHHHHHHHHhcc----cchHHHHHHhcChhhHHHHHHHH------------------HhccccCCCccHHHHHH
Confidence 222222222211111000 00000000000000000000000 01123455899999999
Q ss_pred HHHh-cCCCCCcEEEEEEehHHHHHHHHHHHhhCCCCCCeeEEEEEcCCC--CCCCCCHHHHHHHHHHhcCCCceEEEEc
Q 000384 405 LFLS-FGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTT--SVDALTPKVQKEVLESFRGGKVNLLFAT 481 (1590)
Q Consensus 405 lL~~-~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~--~~~~~~~~~r~~vl~~Fr~g~~~vLVaT 481 (1590)
++.+ +....+.|+|||++.|.||+.+.+.|.... .... ..+.|.++ +..+|++++|.+++++||+|++|+||||
T Consensus 356 ilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~--~~~~-~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaT 432 (542)
T COG1111 356 ILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIG--IKAR-VRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVAT 432 (542)
T ss_pred HHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcC--Ccce-eEEeeccccccccccCHHHHHHHHHHHhcCCceEEEEc
Confidence 9964 445667899999999999999999999852 1222 36667653 3468999999999999999999999999
Q ss_pred ccccccccCCCccEEEEccCCCCHHHHHHHhccccccCce
Q 000384 482 DVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQ 521 (1590)
Q Consensus 482 ~vleeGIDip~~~~VI~fD~p~s~~~yiQr~GRA~R~gs~ 521 (1590)
||+|||||||+|++||+||+..|...+|||+||+||..++
T Consensus 433 SVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~r~G 472 (542)
T COG1111 433 SVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRKRKG 472 (542)
T ss_pred ccccccCCCCcccEEEEecCCcHHHHHHHhhCccccCCCC
Confidence 9999999999999999999999999999999999997655
|
|
| >KOG0354 consensus DEAD-box like helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-48 Score=470.38 Aligned_cols=451 Identities=26% Similarity=0.367 Sum_probs=294.2
Q ss_pred CCCCCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHH
Q 000384 28 HDHAVDGPSSSTNSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVH 107 (1590)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~pR~yQ~e~le~~~~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~ 107 (1590)
+..+.+..+.+.++.++.+|+||.|+.+.|+++|+||++|||+|||+||+..+...++ +.++.+|+|+||++.||.
T Consensus 45 ~~~~~s~~~~~~~p~~~~lR~YQ~eivq~ALgkNtii~lPTG~GKTfIAa~Vm~nh~r----w~p~~KiVF~aP~~pLv~ 120 (746)
T KOG0354|consen 45 HSLDESAAQRWIYPTNLELRNYQEELVQPALGKNTIIALPTGSGKTFIAAVIMKNHFE----WRPKGKVVFLAPTRPLVN 120 (746)
T ss_pred CCCChhhhccccccCcccccHHHHHHhHHhhcCCeEEEeecCCCccchHHHHHHHHHh----cCCcceEEEeeCCchHHH
Confidence 3344444488889999999999999999999999999999999999999999999887 556678999999999999
Q ss_pred HHHHHHHhhc-CCceEEEecCCCCCccchHHHHHhcCCCcEEEEcHHHHHHHHHhcCcCc-cceeEEEEeccccccCCCc
Q 000384 108 QQYDVIRVHT-DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSL-DIVCFIVIDECHHATGNHP 185 (1590)
Q Consensus 108 Qq~~~i~~~~-~~~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~~~~~l-~~i~lII~DEaH~~~~~~~ 185 (1590)
||.+.+...+ +..+....|+.....-....| ...+|+|+|||+|.+.|.++...- +.|.+||||||||+.++|+
T Consensus 121 QQ~a~~~~~~~~~~~T~~l~~~~~~~~r~~i~----~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~ 196 (746)
T KOG0354|consen 121 QQIACFSIYLIPYSVTGQLGDTVPRSNRGEIV----ASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHP 196 (746)
T ss_pred HHHHHHhhccCcccceeeccCccCCCchhhhh----cccceEEeChHhhhhhcccccccccceEEEEEEccccccccccc
Confidence 9998887765 455666666644332222333 479999999999999998876554 8999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCcEEEEeccCCccCCCCChhcHHHHHHHHHhhcCCeeEeec--chhhhhhcccCcceeeEeccCC
Q 000384 186 YTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIE--DKTEMEVFVPSAKESCRFYDQS 263 (1590)
Q Consensus 186 ~~~im~~~~~~~~~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~~~~--~~~~l~~~~~~p~~~~~~y~~~ 263 (1590)
|+.+|..+.......+|||||||||. .+..++...+..|...|+.+....- ..+++.++...|.. .....
T Consensus 197 Y~~Vmr~~l~~k~~~~qILgLTASpG-----~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~-~~~~~-- 268 (746)
T KOG0354|consen 197 YNNIMREYLDLKNQGNQILGLTASPG-----SKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVD-LSLCE-- 268 (746)
T ss_pred HHHHHHHHHHhhhccccEEEEecCCC-----ccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCc-HHHhh--
Confidence 99999987766666679999999998 3356777888888877776433221 22333333333322 11111
Q ss_pred CCcccchhhhHHHhhhhhhhhHHHHHhhh-------hhhhc------------cchhhHH-HHHHHHHHHHHHHHHHHHH
Q 000384 264 KFCGSDLKGKLEVSWSKFDASLSKLQGSQ-------LNCYK------------DMDDKHK-TLRKQLSDYHAKILYCLDE 323 (1590)
Q Consensus 264 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~-------~~~~~------------~~~~~~~-~~~~~l~~~~~~~~~~~~~ 323 (1590)
..+.+.+..... +.+..++... ...|. .....-. .+. ......-....+..
T Consensus 269 ----~~~~~~f~~~i~---p~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~--~~~~~~~~~~ll~~ 339 (746)
T KOG0354|consen 269 ----RDIEDPFGMIIE---PLLQQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFY--ALHLRKYNLALLIS 339 (746)
T ss_pred ----hhhhhhHHHHHH---HHHHHHHhcCccccccccccccchhhhhhhhhccCCCccchhhHH--HHHHHHHHHHHHhh
Confidence 111111111110 1111111000 00010 0000000 000 00000000001111
Q ss_pred hhhh--HHHHHHHHHHHHhHhHHHHHHHHh-hhhHH---HHHHHHHHHHHHhhhcCcchhhhccccCCccccccCCCCCH
Q 000384 324 LGLI--CAYEAVKICLEKVLKAQEECEIYR-QSSLQ---CKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYIST 397 (1590)
Q Consensus 324 lg~~--~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 397 (1590)
-|.- .++.+.....++. ...+ .+... ...++......+... ......-++
T Consensus 340 ~gir~~~~l~~~~~f~~e~-------~~~k~~~~~~e~~~~~~~~~~m~~~~~l-----------------~~~~~~~np 395 (746)
T KOG0354|consen 340 DGIRFVDALDYLEDFYEEV-------ALKKYLKLELEARLIRNFTENMNELEHL-----------------SLDPPKENP 395 (746)
T ss_pred cchhhHHHHhhhhhhcccc-------chhHHHHHHhcchhhHHHHHHHHhhhhh-----------------hcCCCccCh
Confidence 1111 1111111100000 0000 00000 000111111111110 011224589
Q ss_pred HHHHHHHHH-HhcCCCCCcEEEEEEehHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCC--CCCCCHHHHHHHHHHhcCCC
Q 000384 398 KLHELLQLF-LSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTS--VDALTPKVQKEVLESFRGGK 474 (1590)
Q Consensus 398 K~~~L~~lL-~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~--~~~~~~~~r~~vl~~Fr~g~ 474 (1590)
|+..|.+++ +.|...++.|+||||++|..|..|..+|.+. ...++++..+.|.+.+ ..+|++++|.+++++|++|+
T Consensus 396 kle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~-~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~ 474 (746)
T KOG0354|consen 396 KLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQL-HELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGE 474 (746)
T ss_pred hHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhh-hhcccccceeeeccccccccccCHHHHHHHHHHHhCCC
Confidence 999999977 4566677899999999999999999999862 2256788999987643 35899999999999999999
Q ss_pred ceEEEEcccccccccCCCccEEEEccCCCCHHHHHHHhccccccCceEEEEecc
Q 000384 475 VNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLER 528 (1590)
Q Consensus 475 ~~vLVaT~vleeGIDip~~~~VI~fD~p~s~~~yiQr~GRA~R~gs~~ivlv~~ 528 (1590)
+|+||||+|+||||||+.||+||+||...|+...+||+||+|..++++++++..
T Consensus 475 ~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGRgRa~ns~~vll~t~ 528 (746)
T KOG0354|consen 475 INVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGRGRARNSKCVLLTTG 528 (746)
T ss_pred ccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhccccccCCeEEEEEcc
Confidence 999999999999999999999999999999999999999966677777777664
|
|
| >PRK13766 Hef nuclease; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=402.60 Aligned_cols=445 Identities=24% Similarity=0.352 Sum_probs=276.2
Q ss_pred CCCCCCcHHHHHHHHHHhcCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhhcCC-
Q 000384 41 SINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDF- 119 (1590)
Q Consensus 41 ~~~~~pR~yQ~e~le~~~~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~~~- 119 (1590)
+..++||+||.+++..++++|+||++|||+|||++|++++..++. .+++++|||+||++|+.||.+.++.+++.
T Consensus 11 ~~~~~~r~yQ~~~~~~~l~~n~lv~~ptG~GKT~~a~~~i~~~l~-----~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~ 85 (773)
T PRK13766 11 PNTIEARLYQQLLAATALKKNTLVVLPTGLGKTAIALLVIAERLH-----KKGGKVLILAPTKPLVEQHAEFFRKFLNIP 85 (773)
T ss_pred cCcCCccHHHHHHHHHHhcCCeEEEcCCCccHHHHHHHHHHHHHH-----hCCCeEEEEeCcHHHHHHHHHHHHHHhCCC
Confidence 356899999999999999999999999999999999998888764 34567999999999999999999998876
Q ss_pred --ceEEEecCCCCCccchHHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCCCcHHHHHHHHHhcC
Q 000384 120 --EVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS 197 (1590)
Q Consensus 120 --~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~~~~~~im~~~~~~~ 197 (1590)
++..++|+...+. +.....+++|+|+||+++.+.+..+.+.+.++++||||||||+.+++.|..++..|...
T Consensus 86 ~~~v~~~~g~~~~~~-----r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~- 159 (773)
T PRK13766 86 EEKIVVFTGEVSPEK-----RAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHED- 159 (773)
T ss_pred CceEEEEeCCCCHHH-----HHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhc-
Confidence 7888888765432 23334578999999999999888888899999999999999999999999998876543
Q ss_pred CCCCcEEEEeccCCccCCCCChhcHHHHHHHHHhhcCCeeEeec--chhhhhhcccCcceeeEeccCCCCcccchhhhHH
Q 000384 198 DNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIE--DKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLE 275 (1590)
Q Consensus 198 ~~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~~~~--~~~~l~~~~~~p~~~~~~y~~~~~~~~~l~~~~~ 275 (1590)
...|+++||||||..+ ...+..+...|+....... ....+..++..+....+.... .+.+.
T Consensus 160 ~~~~~il~lTaTP~~~---------~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l--------~~~~~ 222 (773)
T PRK13766 160 AKNPLVLGLTASPGSD---------EEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVEL--------PEELK 222 (773)
T ss_pred CCCCEEEEEEcCCCCC---------HHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCC--------cHHHH
Confidence 4578999999999754 2345555555554333222 234555555544332222111 11111
Q ss_pred HhhhhhhhhHHHHHhhhhh-----hhcc-ch-hhHHHHHHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHhHhHHHHH
Q 000384 276 VSWSKFDASLSKLQGSQLN-----CYKD-MD-DKHKTLRKQLSDYHAKILYCLDELGLIC-AYEAVKICLEKVLKAQEEC 347 (1590)
Q Consensus 276 ~~~~~~~~~~~~l~~~~~~-----~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~~lg~~~-a~~~~~~~~~~~~~~~~~~ 347 (1590)
.....+...+......+.. .... +. ..+....+.+.... .. .|. .+.......+ ........
T Consensus 223 ~i~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l-------~~--~~~~~~~~~~~~~~-~~~l~~~~ 292 (773)
T PRK13766 223 EIRDLLNEALKDRLKKLKELGVIVSISPDVSKKELLGLQKKLQQEI-------AN--DDSEGYEAISILAE-AMKLRHAV 292 (773)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCcccCCCCcCHHHHHHHHHHHHHHh-------hc--CchHHHHHHHHHHH-HHHHHHHH
Confidence 1111111111111000000 0000 00 00000011111000 00 000 0000000000 00000000
Q ss_pred H-HHhhhhHHHHHHHHHHHHHHhhhc-Ccchhhhccc-cC--CccccccCCCCCHHHHHHHHHHHhcC-CCCCcEEEEEE
Q 000384 348 E-IYRQSSLQCKYFLEEVLHVIGSAL-PLADKIFLDF-GF--DYSKAVDLGYISTKLHELLQLFLSFG-KSTQVLCIIFV 421 (1590)
Q Consensus 348 ~-~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~-~~--~~~~~~~~~~~s~K~~~L~~lL~~~~-~~~~~k~IIFv 421 (1590)
. ...........|+........... ......+... .. ...........++|+..|.++|.+.. ..++.++||||
T Consensus 293 ~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~ 372 (773)
T PRK13766 293 ELLETQGVEALRRYLERLREEARSSGGSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFT 372 (773)
T ss_pred HHHHHhCHHHHHHHHHHHHhhccccCCcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEe
Confidence 0 000000111111111110000000 0000000000 00 00000011234799999999997542 24567999999
Q ss_pred ehHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCC--CCCCCHHHHHHHHHHhcCCCceEEEEcccccccccCCCccEEEEc
Q 000384 422 ERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTS--VDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRF 499 (1590)
Q Consensus 422 ~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~--~~~~~~~~r~~vl~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~f 499 (1590)
+++.++..|.+.|.. .++.+..++|.+.. ..+|++.+|.+++++|++|++++||||++++||+|+|+|++||+|
T Consensus 373 ~~~~t~~~L~~~L~~----~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~y 448 (773)
T PRK13766 373 QYRDTAEKIVDLLEK----EGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFY 448 (773)
T ss_pred CcHHHHHHHHHHHHh----CCCceEEEEccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEe
Confidence 999999999999976 56778889987432 246899999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHhccccccCce-EEEEec
Q 000384 500 DLPKTVSSYIQSRGRARQHNSQ-FILMLE 527 (1590)
Q Consensus 500 D~p~s~~~yiQr~GRA~R~gs~-~ivlv~ 527 (1590)
|+|+|+..|+||+||+||.|.. .++|+.
T Consensus 449 d~~~s~~r~iQR~GR~gR~~~~~v~~l~~ 477 (773)
T PRK13766 449 EPVPSEIRSIQRKGRTGRQEEGRVVVLIA 477 (773)
T ss_pred CCCCCHHHHHHHhcccCcCCCCEEEEEEe
Confidence 9999999999999999997654 444443
|
|
| >KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=367.03 Aligned_cols=322 Identities=22% Similarity=0.298 Sum_probs=246.1
Q ss_pred CCCCCCcHHHHHHHHHHh-cCCEEEEeCCCChHHHHHHHHHHHHHHH---HHhCCCCeEEEEEecChhhHHHHHHHHHhh
Q 000384 41 SINFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQA---IKSNGFKKLIIFLAPTVHLVHQQYDVIRVH 116 (1590)
Q Consensus 41 ~~~~~pR~yQ~e~le~~~-~~n~Ii~~~TGsGKTliailli~~~l~~---~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~ 116 (1590)
...-.|.|.|...+..++ ++++|..+.||||||+.+++++...+.. ....+..+++|||+||++|+.|..++++.+
T Consensus 109 ~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~~~~ 188 (519)
T KOG0331|consen 109 QGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEAREF 188 (519)
T ss_pred cCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHHHHHH
Confidence 345679999999999998 6999999999999999999987766652 123455778999999999999999999887
Q ss_pred c---CCceEEEecCCCCCccchHHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCCCcHHHHHHHH
Q 000384 117 T---DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEF 193 (1590)
Q Consensus 117 ~---~~~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~~~~~~im~~~ 193 (1590)
. +++...++|+..... +...+..+.+|+|+||++|.+++..+.+.+.++.++|+|||+++.+- .|..-++.+
T Consensus 189 ~~~~~~~~~cvyGG~~~~~----Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMldm-GFe~qI~~I 263 (519)
T KOG0331|consen 189 GKSLRLRSTCVYGGAPKGP----QLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLDM-GFEPQIRKI 263 (519)
T ss_pred cCCCCccEEEEeCCCCccH----HHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhhhcc-ccHHHHHHH
Confidence 5 466888999876543 23445567999999999999999999999999999999999999875 466666666
Q ss_pred HhcCCCCC-cEEEEeccCCccCCCCChhcHHHHHHHHHhhcCCeeEeecchhhhhhcccCcceeeEeccCCCCcccchhh
Q 000384 194 YHKSDNKP-KVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKG 272 (1590)
Q Consensus 194 ~~~~~~~p-riLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~~~~~~~~l~~~~~~p~~~~~~y~~~~~~~~~l~~ 272 (1590)
....++.. +.+..|||=- ..+..|-.. ++..|....+-+..
T Consensus 264 l~~i~~~~rQtlm~saTwp------------~~v~~lA~~----------------fl~~~~~i~ig~~~---------- 305 (519)
T KOG0331|consen 264 LSQIPRPDRQTLMFSATWP------------KEVRQLAED----------------FLNNPIQINVGNKK---------- 305 (519)
T ss_pred HHhcCCCcccEEEEeeecc------------HHHHHHHHH----------------HhcCceEEEecchh----------
Confidence 66664444 5788888821 112222211 11111111100000
Q ss_pred hHHHhhhhhhhhHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHhHHHHHHHHhh
Q 000384 273 KLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQ 352 (1590)
Q Consensus 273 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~ 352 (1590)
. +. +.
T Consensus 306 --------------------------------~----~~-----------------a~---------------------- 310 (519)
T KOG0331|consen 306 --------------------------------E----LK-----------------AN---------------------- 310 (519)
T ss_pred --------------------------------h----hh-----------------hh----------------------
Confidence 0 00 00
Q ss_pred hhHHHHHHHHHHHHHHhhhcCcchhhhccccCCccccccCCCCCHHHHHHHHHHHhcCCCCCcEEEEEEehHHHHHHHHH
Q 000384 353 SSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVER 432 (1590)
Q Consensus 353 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~ta~~L~~ 432 (1590)
..+. ++-... ....|...|.++|..+..+.+.|+||||+++.+++.|..
T Consensus 311 ---------~~i~-qive~~---------------------~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~ 359 (519)
T KOG0331|consen 311 ---------HNIR-QIVEVC---------------------DETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELAR 359 (519)
T ss_pred ---------cchh-hhhhhc---------------------CHHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHH
Confidence 0000 000000 015678888888887766667899999999999999999
Q ss_pred HHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCceEEEEcccccccccCCCccEEEEccCCCCHHHHHHHh
Q 000384 433 FVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSR 512 (1590)
Q Consensus 433 ~L~~~~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fD~p~s~~~yiQr~ 512 (1590)
.+.. .++.+..+||+ .++.+|..+|+.||+|+++|||||+|+++|||||++++||+||+|.+..+|+||+
T Consensus 360 ~l~~----~~~~a~~iHGd------~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRi 429 (519)
T KOG0331|consen 360 NLRR----KGWPAVAIHGD------KSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRI 429 (519)
T ss_pred HHHh----cCcceeeeccc------ccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEeCCCCCCHHHHHhhc
Confidence 9988 46899999999 8999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCce
Q 000384 513 GRARQHNSQ 521 (1590)
Q Consensus 513 GRA~R~gs~ 521 (1590)
||+||.|.+
T Consensus 430 GRTGRa~~~ 438 (519)
T KOG0331|consen 430 GRTGRAGKK 438 (519)
T ss_pred CccccCCCC
Confidence 999996654
|
|
| >PTZ00110 helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-36 Score=375.61 Aligned_cols=326 Identities=20% Similarity=0.250 Sum_probs=238.1
Q ss_pred CCCCcHHHHHHHHHHh-cCCEEEEeCCCChHHHHHHHHHHHHHHHH--HhCCCCeEEEEEecChhhHHHHHHHHHhhc--
Q 000384 43 NFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAI--KSNGFKKLIIFLAPTVHLVHQQYDVIRVHT-- 117 (1590)
Q Consensus 43 ~~~pR~yQ~e~le~~~-~~n~Ii~~~TGsGKTliailli~~~l~~~--~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~-- 117 (1590)
...|+++|.++++.++ ++|+|+++|||||||+++++++...+... ...+.+..+|||+||++||.|+.++++.+.
T Consensus 150 ~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~ 229 (545)
T PTZ00110 150 FTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFGAS 229 (545)
T ss_pred CCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHHhcc
Confidence 3469999999999998 59999999999999999998765543211 112345679999999999999999998864
Q ss_pred -CCceEEEecCCCCCccchHHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCCCcHHHHHHHHHhc
Q 000384 118 -DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHK 196 (1590)
Q Consensus 118 -~~~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~~~~~~im~~~~~~ 196 (1590)
++++..++|+.... ..+.....+++|+|+||++|.+++.++...+.++++||+||||++... .|...+..+...
T Consensus 230 ~~i~~~~~~gg~~~~----~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~-gf~~~i~~il~~ 304 (545)
T PTZ00110 230 SKIRNTVAYGGVPKR----GQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDM-GFEPQIRKIVSQ 304 (545)
T ss_pred cCccEEEEeCCCCHH----HHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhc-chHHHHHHHHHh
Confidence 57788888876432 234445568999999999999999998889999999999999999875 455555555555
Q ss_pred CCCCCcEEEEeccCCccCCCCChhcHHHHHHHHHhhcCCeeEeecchhhhhhcccCcceeeEeccCCCCcccchhhhHHH
Q 000384 197 SDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEV 276 (1590)
Q Consensus 197 ~~~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~~~~~~~~l~~~~~~p~~~~~~y~~~~~~~~~l~~~~~~ 276 (1590)
..+..+++++|||... .+..+...+.. ..|.. +.........
T Consensus 305 ~~~~~q~l~~SAT~p~------------~v~~l~~~l~~---------------~~~v~--i~vg~~~l~~--------- 346 (545)
T PTZ00110 305 IRPDRQTLMWSATWPK------------EVQSLARDLCK---------------EEPVH--VNVGSLDLTA--------- 346 (545)
T ss_pred CCCCCeEEEEEeCCCH------------HHHHHHHHHhc---------------cCCEE--EEECCCcccc---------
Confidence 5677899999999531 11222211100 00000 0000000000
Q ss_pred hhhhhhhhHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHhHHHHHHHHhhhhHH
Q 000384 277 SWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQ 356 (1590)
Q Consensus 277 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (1590)
...
T Consensus 347 -------------------~~~---------------------------------------------------------- 349 (545)
T PTZ00110 347 -------------------CHN---------------------------------------------------------- 349 (545)
T ss_pred -------------------CCC----------------------------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHhhhcCcchhhhccccCCccccccCCCCCHHHHHHHHHHHhcCCCCCcEEEEEEehHHHHHHHHHHHhh
Q 000384 357 CKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKK 436 (1590)
Q Consensus 357 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~ 436 (1590)
+.+. + ..-....|...|.+++.... ..+.++||||+++.+++.|++.|..
T Consensus 350 -----------i~q~-------~-----------~~~~~~~k~~~L~~ll~~~~-~~~~k~LIF~~t~~~a~~l~~~L~~ 399 (545)
T PTZ00110 350 -----------IKQE-------V-----------FVVEEHEKRGKLKMLLQRIM-RDGDKILIFVETKKGADFLTKELRL 399 (545)
T ss_pred -----------eeEE-------E-----------EEEechhHHHHHHHHHHHhc-ccCCeEEEEecChHHHHHHHHHHHH
Confidence 0000 0 00000234455555555433 1456999999999999999999986
Q ss_pred CCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCceEEEEcccccccccCCCccEEEEccCCCCHHHHHHHhcccc
Q 000384 437 VPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRAR 516 (1590)
Q Consensus 437 ~~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fD~p~s~~~yiQr~GRA~ 516 (1590)
.++.+..+||+ |++++|.+++++|++|+++|||||+++++|||+|+|++||+||+|.+..+|+||+||+|
T Consensus 400 ----~g~~~~~ihg~------~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtG 469 (545)
T PTZ00110 400 ----DGWPALCIHGD------KKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTG 469 (545)
T ss_pred ----cCCcEEEEECC------CcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccc
Confidence 57888999998 89999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCce--EEEEecc
Q 000384 517 QHNSQ--FILMLER 528 (1590)
Q Consensus 517 R~gs~--~ivlv~~ 528 (1590)
|.|.. .+.++..
T Consensus 470 R~G~~G~ai~~~~~ 483 (545)
T PTZ00110 470 RAGAKGASYTFLTP 483 (545)
T ss_pred cCCCCceEEEEECc
Confidence 99865 4455544
|
|
| >PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=371.89 Aligned_cols=325 Identities=23% Similarity=0.324 Sum_probs=232.7
Q ss_pred CCCCcHHHHHHHHHHh-cCCEEEEeCCCChHHHHHHHHHHHHHHHHH----hCCCCeEEEEEecChhhHHHHHHHHHhh-
Q 000384 43 NFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIK----SNGFKKLIIFLAPTVHLVHQQYDVIRVH- 116 (1590)
Q Consensus 43 ~~~pR~yQ~e~le~~~-~~n~Ii~~~TGsGKTliailli~~~l~~~~----~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~- 116 (1590)
...|+++|.++++.++ ++|+|+++|||||||+++++++...+.... ....+.+++||+||++|+.|+.+.++.+
T Consensus 141 ~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~ 220 (518)
T PLN00206 141 YEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVLG 220 (518)
T ss_pred CCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHHHh
Confidence 3579999999999998 589999999999999999998766543211 1224568999999999999998887765
Q ss_pred --cCCceEEEecCCCCCccchHHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCCCcHHHHHHHHH
Q 000384 117 --TDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFY 194 (1590)
Q Consensus 117 --~~~~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~~~~~~im~~~~ 194 (1590)
+++++..++|+..... .......+++|+|+||+.|.+++..+.+.+.++.+|||||||++.+.. |...+...+
T Consensus 221 ~~~~~~~~~~~gG~~~~~----q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~~g-f~~~i~~i~ 295 (518)
T PLN00206 221 KGLPFKTALVVGGDAMPQ----QLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERG-FRDQVMQIF 295 (518)
T ss_pred CCCCceEEEEECCcchHH----HHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHhhcc-hHHHHHHHH
Confidence 3577777888755332 223344678999999999999999888899999999999999998764 433333333
Q ss_pred hcCCCCCcEEEEeccCCccCCCCChhcHHHHHHHHHhhcCCeeEeecchhhhhhcccCcceeeEeccCCCCcccchhhhH
Q 000384 195 HKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKL 274 (1590)
Q Consensus 195 ~~~~~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~~~~~~~~l~~~~~~p~~~~~~y~~~~~~~~~l~~~~ 274 (1590)
... +.++++++|||.... +..+...+......+ ...........+.+
T Consensus 296 ~~l-~~~q~l~~SATl~~~------------v~~l~~~~~~~~~~i------------------~~~~~~~~~~~v~q-- 342 (518)
T PLN00206 296 QAL-SQPQVLLFSATVSPE------------VEKFASSLAKDIILI------------------SIGNPNRPNKAVKQ-- 342 (518)
T ss_pred HhC-CCCcEEEEEeeCCHH------------HHHHHHHhCCCCEEE------------------EeCCCCCCCcceeE--
Confidence 333 468999999996421 222322221110000 00000000000000
Q ss_pred HHhhhhhhhhHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHhHHHHHHHHhhhh
Q 000384 275 EVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSS 354 (1590)
Q Consensus 275 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (1590)
.+ .|
T Consensus 343 --------------------~~-----------------------------~~--------------------------- 346 (518)
T PLN00206 343 --------------------LA-----------------------------IW--------------------------- 346 (518)
T ss_pred --------------------EE-----------------------------Ee---------------------------
Confidence 00 00
Q ss_pred HHHHHHHHHHHHHHhhhcCcchhhhccccCCccccccCCCCCHHHHHHHHHHHhcCCCCCcEEEEEEehHHHHHHHHHHH
Q 000384 355 LQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFV 434 (1590)
Q Consensus 355 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L 434 (1590)
-....|...|.+++.... ....++||||+++..++.|++.|
T Consensus 347 --------------------------------------~~~~~k~~~l~~~l~~~~-~~~~~~iVFv~s~~~a~~l~~~L 387 (518)
T PLN00206 347 --------------------------------------VETKQKKQKLFDILKSKQ-HFKPPAVVFVSSRLGADLLANAI 387 (518)
T ss_pred --------------------------------------ccchhHHHHHHHHHHhhc-ccCCCEEEEcCCchhHHHHHHHH
Confidence 000123334444444322 11247999999999999999998
Q ss_pred hhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCceEEEEcccccccccCCCccEEEEccCCCCHHHHHHHhcc
Q 000384 435 KKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514 (1590)
Q Consensus 435 ~~~~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fD~p~s~~~yiQr~GR 514 (1590)
... .++.+..+||. |+.++|.+++++|++|+++|||||+++++|||+|++++||+||+|.+..+|+||+||
T Consensus 388 ~~~---~g~~~~~~Hg~------~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGR 458 (518)
T PLN00206 388 TVV---TGLKALSIHGE------KSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGR 458 (518)
T ss_pred hhc---cCcceEEeeCC------CCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccc
Confidence 753 46788999998 899999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCce--EEEEeccc
Q 000384 515 ARQHNSQ--FILMLERS 529 (1590)
Q Consensus 515 A~R~gs~--~ivlv~~~ 529 (1590)
|||.|.. .++++..+
T Consensus 459 aGR~g~~G~ai~f~~~~ 475 (518)
T PLN00206 459 ASRMGEKGTAIVFVNEE 475 (518)
T ss_pred cccCCCCeEEEEEEchh
Confidence 9998864 55555543
|
|
| >PRK04837 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=366.41 Aligned_cols=323 Identities=20% Similarity=0.238 Sum_probs=235.7
Q ss_pred CCCCCcHHHHHHHHHHh-cCCEEEEeCCCChHHHHHHHHHHHHHHHHHh----CCCCeEEEEEecChhhHHHHHHHHHhh
Q 000384 42 INFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKS----NGFKKLIIFLAPTVHLVHQQYDVIRVH 116 (1590)
Q Consensus 42 ~~~~pR~yQ~e~le~~~-~~n~Ii~~~TGsGKTliailli~~~l~~~~~----~~~~~~vl~LvPt~~Lv~Qq~~~i~~~ 116 (1590)
....|+++|.++++.++ ++|+|+.+|||||||+++++++.+.+..... .....++|||+||++|+.|+++.+...
T Consensus 27 g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~l 106 (423)
T PRK04837 27 GFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADAEPL 106 (423)
T ss_pred CCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHHHHHHH
Confidence 34578999999999987 5899999999999999999988765542111 123467999999999999998877764
Q ss_pred ---cCCceEEEecCCCCCccchHHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCCCcHHHHHHHH
Q 000384 117 ---TDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEF 193 (1590)
Q Consensus 117 ---~~~~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~~~~~~im~~~ 193 (1590)
+++++..++|+.+.+. .+.....+++|+|+||+.|.+++.++.+.+.++++||+||||++... .|...+..+
T Consensus 107 ~~~~~~~v~~~~gg~~~~~----~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad~l~~~-~f~~~i~~i 181 (423)
T PRK04837 107 AQATGLKLGLAYGGDGYDK----QLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMFDL-GFIKDIRWL 181 (423)
T ss_pred hccCCceEEEEECCCCHHH----HHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecHHHHhhc-ccHHHHHHH
Confidence 5789999999765432 23333457899999999999999999999999999999999999765 444555555
Q ss_pred HhcCCC--CCcEEEEeccCCccCCCCChhcHHHHHHHHH-hhcCCeeEeecchhhhhhcccCcceeeEeccCCCCcccch
Q 000384 194 YHKSDN--KPKVFGMTASPVVRKGVSSAMDCEGQISELE-STLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDL 270 (1590)
Q Consensus 194 ~~~~~~--~priLgLTATP~~~~~~~~~~~~~~~i~~Le-~~l~~~i~~~~~~~~l~~~~~~p~~~~~~y~~~~~~~~~l 270 (1590)
+...+. ....+++|||.... +..+. ..+. .|.... ..+.......+
T Consensus 182 ~~~~~~~~~~~~~l~SAT~~~~------------~~~~~~~~~~-----------------~p~~i~--v~~~~~~~~~i 230 (423)
T PRK04837 182 FRRMPPANQRLNMLFSATLSYR------------VRELAFEHMN-----------------NPEYVE--VEPEQKTGHRI 230 (423)
T ss_pred HHhCCCccceeEEEEeccCCHH------------HHHHHHHHCC-----------------CCEEEE--EcCCCcCCCce
Confidence 544432 23458999996421 11111 1111 111100 00000000000
Q ss_pred hhhHHHhhhhhhhhHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHhHHHHHHHH
Q 000384 271 KGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIY 350 (1590)
Q Consensus 271 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~ 350 (1590)
...+
T Consensus 231 ----------------------~~~~------------------------------------------------------ 234 (423)
T PRK04837 231 ----------------------KEEL------------------------------------------------------ 234 (423)
T ss_pred ----------------------eEEE------------------------------------------------------
Confidence 0000
Q ss_pred hhhhHHHHHHHHHHHHHHhhhcCcchhhhccccCCccccccCCCCCHHHHHHHHHHHhcCCCCCcEEEEEEehHHHHHHH
Q 000384 351 RQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVV 430 (1590)
Q Consensus 351 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~ta~~L 430 (1590)
.......|...|..++... ...++||||+++..++.+
T Consensus 235 ----------------------------------------~~~~~~~k~~~l~~ll~~~---~~~~~lVF~~t~~~~~~l 271 (423)
T PRK04837 235 ----------------------------------------FYPSNEEKMRLLQTLIEEE---WPDRAIIFANTKHRCEEI 271 (423)
T ss_pred ----------------------------------------EeCCHHHHHHHHHHHHHhc---CCCeEEEEECCHHHHHHH
Confidence 0000123455555555432 245899999999999999
Q ss_pred HHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCceEEEEcccccccccCCCccEEEEccCCCCHHHHHH
Q 000384 431 ERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQ 510 (1590)
Q Consensus 431 ~~~L~~~~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fD~p~s~~~yiQ 510 (1590)
.+.|.. .++.+..+||+ |++++|.+++++|++|++++||||+++++|||+|+|++||+||+|.+..+|+|
T Consensus 272 ~~~L~~----~g~~v~~lhg~------~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiq 341 (423)
T PRK04837 272 WGHLAA----DGHRVGLLTGD------VAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVH 341 (423)
T ss_pred HHHHHh----CCCcEEEecCC------CChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEEEeCCCCchhheEe
Confidence 999987 57889999998 89999999999999999999999999999999999999999999999999999
Q ss_pred HhccccccCce--EEEEeccc
Q 000384 511 SRGRARQHNSQ--FILMLERS 529 (1590)
Q Consensus 511 r~GRA~R~gs~--~ivlv~~~ 529 (1590)
|+||+||.|.. .+.++.+.
T Consensus 342 R~GR~gR~G~~G~ai~~~~~~ 362 (423)
T PRK04837 342 RIGRTGRAGASGHSISLACEE 362 (423)
T ss_pred ccccccCCCCCeeEEEEeCHH
Confidence 99999999864 55555443
|
|
| >KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=331.30 Aligned_cols=320 Identities=21% Similarity=0.293 Sum_probs=249.3
Q ss_pred CCCCCcHHHHHHHHHHh-cCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhh---c
Q 000384 42 INFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVH---T 117 (1590)
Q Consensus 42 ~~~~pR~yQ~e~le~~~-~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~---~ 117 (1590)
....|.+.|.++++.++ ++++|..+.||||||.+++++|.+.+- .......++||+||++|+.|.++.+... +
T Consensus 80 ~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL---~~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~i 156 (476)
T KOG0330|consen 80 GWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLL---QEPKLFFALVLTPTRELAQQIAEQFEALGSGI 156 (476)
T ss_pred CcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHH---cCCCCceEEEecCcHHHHHHHHHHHHHhcccc
Confidence 46789999999999998 599999999999999999998876543 2344578999999999999999999886 5
Q ss_pred CCceEEEecCCCCCccchHHHHHhcCCCcEEEEcHHHHHHHHH-hcCcCccceeEEEEeccccccCCCcHHHHHHHHHhc
Q 000384 118 DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALR-KAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHK 196 (1590)
Q Consensus 118 ~~~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~-~~~~~l~~i~lII~DEaH~~~~~~~~~~im~~~~~~ 196 (1590)
|+++..+.|+++... .-.....+++|+|+||+.|++.+. .+.++++++..+|+|||+++.+. .|...+..++..
T Consensus 157 glr~~~lvGG~~m~~----q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrlLd~-dF~~~ld~ILk~ 231 (476)
T KOG0330|consen 157 GLRVAVLVGGMDMML----QANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRLLDM-DFEEELDYILKV 231 (476)
T ss_pred CeEEEEEecCchHHH----HHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHhhhhh-hhHHHHHHHHHh
Confidence 899999999886432 234566789999999999999998 66789999999999999999876 777777777777
Q ss_pred CCCCCcEEEEeccCCccCCCCChhcHHHHHHHHHhhcCCeeEeecchhhhhhcccCcceeeEeccCCCCcccchhhhHHH
Q 000384 197 SDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEV 276 (1590)
Q Consensus 197 ~~~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~~~~~~~~l~~~~~~p~~~~~~y~~~~~~~~~l~~~~~~ 276 (1590)
.+...+.++.|||...+ +.+|... .+..|.....
T Consensus 232 ip~erqt~LfsATMt~k------------v~kL~ra----------------sl~~p~~v~~------------------ 265 (476)
T KOG0330|consen 232 IPRERQTFLFSATMTKK------------VRKLQRA----------------SLDNPVKVAV------------------ 265 (476)
T ss_pred cCccceEEEEEeecchh------------hHHHHhh----------------ccCCCeEEec------------------
Confidence 77788899999995422 3333311 1111111100
Q ss_pred hhhhhhhhHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHhHHHHHHHHhhhhHH
Q 000384 277 SWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQ 356 (1590)
Q Consensus 277 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (1590)
.+.|.+++. +
T Consensus 266 ----------------s~ky~tv~~----l-------------------------------------------------- 275 (476)
T KOG0330|consen 266 ----------------SSKYQTVDH----L-------------------------------------------------- 275 (476)
T ss_pred ----------------cchhcchHH----h--------------------------------------------------
Confidence 001111100 0
Q ss_pred HHHHHHHHHHHHhhhcCcchhhhccccCCccccccCCCCCHHHHHHHHHHHhcCCCCCcEEEEEEehHHHHHHHHHHHhh
Q 000384 357 CKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKK 436 (1590)
Q Consensus 357 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~ 436 (1590)
.+.|+ .++ ...|...|+.+|.+.. +...||||++..++..++-+|..
T Consensus 276 kQ~yl---------fv~---------------------~k~K~~yLV~ll~e~~---g~s~iVF~~t~~tt~~la~~L~~ 322 (476)
T KOG0330|consen 276 KQTYL---------FVP---------------------GKDKDTYLVYLLNELA---GNSVIVFCNTCNTTRFLALLLRN 322 (476)
T ss_pred hhheE---------ecc---------------------ccccchhHHHHHHhhc---CCcEEEEEeccchHHHHHHHHHh
Confidence 00000 000 0235567777887654 35799999999999999999998
Q ss_pred CCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCceEEEEcccccccccCCCccEEEEccCCCCHHHHHHHhcccc
Q 000384 437 VPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRAR 516 (1590)
Q Consensus 437 ~~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fD~p~s~~~yiQr~GRA~ 516 (1590)
+ ++.+..+||. |+++.|...+++|++|.++|||||+|+++|+|+|.+++||+||.|.+..+||||+||++
T Consensus 323 l----g~~a~~LhGq------msq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRta 392 (476)
T KOG0330|consen 323 L----GFQAIPLHGQ------MSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTA 392 (476)
T ss_pred c----Ccceecccch------hhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEecCCCCcHHHHHHHccccc
Confidence 4 7889999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCce--EEEEecc
Q 000384 517 QHNSQ--FILMLER 528 (1590)
Q Consensus 517 R~gs~--~ivlv~~ 528 (1590)
|.|.. .+-+|..
T Consensus 393 RaGrsG~~ItlVtq 406 (476)
T KOG0330|consen 393 RAGRSGKAITLVTQ 406 (476)
T ss_pred ccCCCcceEEEEeh
Confidence 98853 5555543
|
|
| >PRK11192 ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=368.43 Aligned_cols=325 Identities=20% Similarity=0.278 Sum_probs=239.1
Q ss_pred CCCCCcHHHHHHHHHHh-cCCEEEEeCCCChHHHHHHHHHHHHHHHHH-hCCCCeEEEEEecChhhHHHHHHHHHhh---
Q 000384 42 INFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIK-SNGFKKLIIFLAPTVHLVHQQYDVIRVH--- 116 (1590)
Q Consensus 42 ~~~~pR~yQ~e~le~~~-~~n~Ii~~~TGsGKTliailli~~~l~~~~-~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~--- 116 (1590)
...+|+++|.++++.++ ++|+|+.+|||+|||+++++++.+.+.... ...+..++|||+||++|+.|+++.++.+
T Consensus 20 g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~~~ 99 (434)
T PRK11192 20 GYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQARELAKH 99 (434)
T ss_pred CCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHHHHHcc
Confidence 34569999999999988 489999999999999999998776654221 1233457999999999999998877764
Q ss_pred cCCceEEEecCCCCCccchHHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCCCcHHHHHHHHHhc
Q 000384 117 TDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHK 196 (1590)
Q Consensus 117 ~~~~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~~~~~~im~~~~~~ 196 (1590)
+++++..++|+.....+ ......+++|+|+||++|++.+.++.+.+.++++|||||||++... .+...+..+...
T Consensus 100 ~~~~v~~~~gg~~~~~~----~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l~~-~~~~~~~~i~~~ 174 (434)
T PRK11192 100 THLDIATITGGVAYMNH----AEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRMLDM-GFAQDIETIAAE 174 (434)
T ss_pred CCcEEEEEECCCCHHHH----HHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHhCC-CcHHHHHHHHHh
Confidence 57899999998765431 2233457899999999999999988888999999999999999865 455666655555
Q ss_pred CCCCCcEEEEeccCCccCCCCChhcHHHHHHHHHhhcCCeeEeecchhhhhhcccCcceeeEeccCCCCcccchhhhHHH
Q 000384 197 SDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEV 276 (1590)
Q Consensus 197 ~~~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~~~~~~~~l~~~~~~p~~~~~~y~~~~~~~~~l~~~~~~ 276 (1590)
.....+++++|||+... .+..+...+. ..|.... ..+...... .+
T Consensus 175 ~~~~~q~~~~SAT~~~~-----------~~~~~~~~~~----------------~~~~~i~--~~~~~~~~~----~i-- 219 (434)
T PRK11192 175 TRWRKQTLLFSATLEGD-----------AVQDFAERLL----------------NDPVEVE--AEPSRRERK----KI-- 219 (434)
T ss_pred CccccEEEEEEeecCHH-----------HHHHHHHHHc----------------cCCEEEE--ecCCccccc----Cc--
Confidence 56668899999997521 1222222111 0110000 000000000 00
Q ss_pred hhhhhhhhHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHhHHHHHHHHhhhhHH
Q 000384 277 SWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQ 356 (1590)
Q Consensus 277 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (1590)
...+.
T Consensus 220 ----------------~~~~~----------------------------------------------------------- 224 (434)
T PRK11192 220 ----------------HQWYY----------------------------------------------------------- 224 (434)
T ss_pred ----------------eEEEE-----------------------------------------------------------
Confidence 00000
Q ss_pred HHHHHHHHHHHHhhhcCcchhhhccccCCccccccCCCCCHHHHHHHHHHHhcCCCCCcEEEEEEehHHHHHHHHHHHhh
Q 000384 357 CKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKK 436 (1590)
Q Consensus 357 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~ 436 (1590)
.......|...|..++.. ....++||||+++..+..|++.|..
T Consensus 225 ----------------------------------~~~~~~~k~~~l~~l~~~---~~~~~~lVF~~s~~~~~~l~~~L~~ 267 (434)
T PRK11192 225 ----------------------------------RADDLEHKTALLCHLLKQ---PEVTRSIVFVRTRERVHELAGWLRK 267 (434)
T ss_pred ----------------------------------EeCCHHHHHHHHHHHHhc---CCCCeEEEEeCChHHHHHHHHHHHh
Confidence 000012344455555543 2346899999999999999999987
Q ss_pred CCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCceEEEEcccccccccCCCccEEEEccCCCCHHHHHHHhcccc
Q 000384 437 VPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRAR 516 (1590)
Q Consensus 437 ~~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fD~p~s~~~yiQr~GRA~ 516 (1590)
.++.+..+||+ |++.+|..++++|++|+++|||||+++++|||+|++++||+||+|.+...|+||+||+|
T Consensus 268 ----~~~~~~~l~g~------~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~g 337 (434)
T PRK11192 268 ----AGINCCYLEGE------MVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTG 337 (434)
T ss_pred ----CCCCEEEecCC------CCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEEECCCCCHHHHhhcccccc
Confidence 57889999998 99999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCce--EEEEecc
Q 000384 517 QHNSQ--FILMLER 528 (1590)
Q Consensus 517 R~gs~--~ivlv~~ 528 (1590)
|.|.. .++++..
T Consensus 338 R~g~~g~ai~l~~~ 351 (434)
T PRK11192 338 RAGRKGTAISLVEA 351 (434)
T ss_pred cCCCCceEEEEecH
Confidence 98875 4555544
|
|
| >PRK11776 ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=368.10 Aligned_cols=320 Identities=19% Similarity=0.253 Sum_probs=240.0
Q ss_pred CCCCcHHHHHHHHHHh-cCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhhc----
Q 000384 43 NFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT---- 117 (1590)
Q Consensus 43 ~~~pR~yQ~e~le~~~-~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~---- 117 (1590)
...|+++|.++++.++ ++|+|+++|||||||+++++++.+.+. .......++||+||++|+.|++++++...
T Consensus 24 ~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~---~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~ 100 (460)
T PRK11776 24 YTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLD---VKRFRVQALVLCPTRELADQVAKEIRRLARFIP 100 (460)
T ss_pred CCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhh---hccCCceEEEEeCCHHHHHHHHHHHHHHHhhCC
Confidence 4469999999999987 589999999999999999998887664 22234469999999999999999998753
Q ss_pred CCceEEEecCCCCCccchHHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCCCcHHHHHHHHHhcC
Q 000384 118 DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS 197 (1590)
Q Consensus 118 ~~~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~~~~~~im~~~~~~~ 197 (1590)
++++..++|+.+.+. .+.....+++|+|+||+.|.+.+.++.+.+.++++||+||||++... .|...+...+...
T Consensus 101 ~~~v~~~~Gg~~~~~----~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~l~~-g~~~~l~~i~~~~ 175 (460)
T PRK11776 101 NIKVLTLCGGVPMGP----QIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLDM-GFQDAIDAIIRQA 175 (460)
T ss_pred CcEEEEEECCCChHH----HHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHHhCc-CcHHHHHHHHHhC
Confidence 688889999876543 22333467899999999999999998889999999999999999765 4444555555566
Q ss_pred CCCCcEEEEeccCCccCCCCChhcHHHHHHHHHhhcCCeeEeecchhhhhhcccCcceeeEeccCCCCcccchhhhHHHh
Q 000384 198 DNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVS 277 (1590)
Q Consensus 198 ~~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~~~~~~~~l~~~~~~p~~~~~~y~~~~~~~~~l~~~~~~~ 277 (1590)
+...+++++|||+.. .+..+...+ ...|...... ..... .. +
T Consensus 176 ~~~~q~ll~SAT~~~------------~~~~l~~~~----------------~~~~~~i~~~-~~~~~--~~----i--- 217 (460)
T PRK11776 176 PARRQTLLFSATYPE------------GIAAISQRF----------------QRDPVEVKVE-STHDL--PA----I--- 217 (460)
T ss_pred CcccEEEEEEecCcH------------HHHHHHHHh----------------cCCCEEEEEC-cCCCC--CC----e---
Confidence 667889999999742 122222211 1111111000 00000 00 0
Q ss_pred hhhhhhhHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHhHHHHHHHHhhhhHHH
Q 000384 278 WSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQC 357 (1590)
Q Consensus 278 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (1590)
...|..
T Consensus 218 ---------------~~~~~~----------------------------------------------------------- 223 (460)
T PRK11776 218 ---------------EQRFYE----------------------------------------------------------- 223 (460)
T ss_pred ---------------eEEEEE-----------------------------------------------------------
Confidence 000000
Q ss_pred HHHHHHHHHHHhhhcCcchhhhccccCCccccccCCCCCHHHHHHHHHHHhcCCCCCcEEEEEEehHHHHHHHHHHHhhC
Q 000384 358 KYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKV 437 (1590)
Q Consensus 358 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~ 437 (1590)
-....|...|..++.... ..++||||+++..++.+++.|..
T Consensus 224 -----------------------------------~~~~~k~~~l~~ll~~~~---~~~~lVF~~t~~~~~~l~~~L~~- 264 (460)
T PRK11776 224 -----------------------------------VSPDERLPALQRLLLHHQ---PESCVVFCNTKKECQEVADALNA- 264 (460)
T ss_pred -----------------------------------eCcHHHHHHHHHHHHhcC---CCceEEEECCHHHHHHHHHHHHh-
Confidence 000225555666665432 35799999999999999999987
Q ss_pred CCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCceEEEEcccccccccCCCccEEEEccCCCCHHHHHHHhccccc
Q 000384 438 PFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQ 517 (1590)
Q Consensus 438 ~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fD~p~s~~~yiQr~GRA~R 517 (1590)
.++.+..+||+ |++++|.+++++|++|++++||||+++++|||+|++++||+||.|.+..+|+||+||+||
T Consensus 265 ---~~~~v~~~hg~------~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR 335 (460)
T PRK11776 265 ---QGFSALALHGD------LEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGR 335 (460)
T ss_pred ---CCCcEEEEeCC------CCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEEecCCCCHhHhhhhcccccC
Confidence 57889999998 999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCce--EEEEeccch
Q 000384 518 HNSQ--FILMLERSE 530 (1590)
Q Consensus 518 ~gs~--~ivlv~~~E 530 (1590)
.|+. .+.++...|
T Consensus 336 ~g~~G~ai~l~~~~e 350 (460)
T PRK11776 336 AGSKGLALSLVAPEE 350 (460)
T ss_pred CCCcceEEEEEchhH
Confidence 8864 444544433
|
|
| >PRK10590 ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=366.28 Aligned_cols=323 Identities=19% Similarity=0.208 Sum_probs=233.6
Q ss_pred CCCCCcHHHHHHHHHHhc-CCEEEEeCCCChHHHHHHHHHHHHHHHHHh---CCCCeEEEEEecChhhHHHHHHHHHhh-
Q 000384 42 INFIPRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKS---NGFKKLIIFLAPTVHLVHQQYDVIRVH- 116 (1590)
Q Consensus 42 ~~~~pR~yQ~e~le~~~~-~n~Ii~~~TGsGKTliailli~~~l~~~~~---~~~~~~vl~LvPt~~Lv~Qq~~~i~~~- 116 (1590)
....|+++|.++++.++. +|+|+.+|||||||+++++++.+.+..... .....++|||+||++|+.|+.+.++.+
T Consensus 20 g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~~~~ 99 (456)
T PRK10590 20 GYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYS 99 (456)
T ss_pred CCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHHHHHHh
Confidence 345799999999999884 999999999999999999988776642111 112346999999999999999999875
Q ss_pred --cCCceEEEecCCCCCccchHHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCCCcHHHHHHHHH
Q 000384 117 --TDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFY 194 (1590)
Q Consensus 117 --~~~~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~~~~~~im~~~~ 194 (1590)
.++++..++|+.+.+. .+......++|+|+||+.|++.+.+..+.++++++||+||||++.... |...+...+
T Consensus 100 ~~~~~~~~~~~gg~~~~~----~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~ll~~~-~~~~i~~il 174 (456)
T PRK10590 100 KYLNIRSLVVFGGVSINP----QMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMG-FIHDIRRVL 174 (456)
T ss_pred ccCCCEEEEEECCcCHHH----HHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHHhccc-cHHHHHHHH
Confidence 4678888888875432 234445678999999999999999888899999999999999998764 333334444
Q ss_pred hcCCCCCcEEEEeccCCccCCCCChhcHHHHHHHHHhhcCCeeEeecchhhhhhcccCcceeeEeccCCCCcccchhhhH
Q 000384 195 HKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKL 274 (1590)
Q Consensus 195 ~~~~~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~~~~~~~~l~~~~~~p~~~~~~y~~~~~~~~~l~~~~ 274 (1590)
.......+++++|||+... +..+...+. ..|....+....... ..+
T Consensus 175 ~~l~~~~q~l~~SAT~~~~------------~~~l~~~~~----------------~~~~~i~~~~~~~~~--~~i---- 220 (456)
T PRK10590 175 AKLPAKRQNLLFSATFSDD------------IKALAEKLL----------------HNPLEIEVARRNTAS--EQV---- 220 (456)
T ss_pred HhCCccCeEEEEeCCCcHH------------HHHHHHHHc----------------CCCeEEEEecccccc--cce----
Confidence 4555667899999996421 222222111 111111000000000 000
Q ss_pred HHhhhhhhhhHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHhHHHHHHHHhhhh
Q 000384 275 EVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSS 354 (1590)
Q Consensus 275 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (1590)
...+...
T Consensus 221 ------------------~~~~~~~------------------------------------------------------- 227 (456)
T PRK10590 221 ------------------TQHVHFV------------------------------------------------------- 227 (456)
T ss_pred ------------------eEEEEEc-------------------------------------------------------
Confidence 0000000
Q ss_pred HHHHHHHHHHHHHHhhhcCcchhhhccccCCccccccCCCCCHHHHHHHHHHHhcCCCCCcEEEEEEehHHHHHHHHHHH
Q 000384 355 LQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFV 434 (1590)
Q Consensus 355 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L 434 (1590)
....|...|..++.. ....++||||+++..++.|++.|
T Consensus 228 ---------------------------------------~~~~k~~~l~~l~~~---~~~~~~lVF~~t~~~~~~l~~~L 265 (456)
T PRK10590 228 ---------------------------------------DKKRKRELLSQMIGK---GNWQQVLVFTRTKHGANHLAEQL 265 (456)
T ss_pred ---------------------------------------CHHHHHHHHHHHHHc---CCCCcEEEEcCcHHHHHHHHHHH
Confidence 000111222222222 22357999999999999999999
Q ss_pred hhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCceEEEEcccccccccCCCccEEEEccCCCCHHHHHHHhcc
Q 000384 435 KKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514 (1590)
Q Consensus 435 ~~~~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fD~p~s~~~yiQr~GR 514 (1590)
.. .++.+..+||. |++++|.+++++|++|+++|||||+++++|||+|++++||+||+|.++.+|+||+||
T Consensus 266 ~~----~g~~~~~lhg~------~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GR 335 (456)
T PRK10590 266 NK----DGIRSAAIHGN------KSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGR 335 (456)
T ss_pred HH----CCCCEEEEECC------CCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhccc
Confidence 87 57889999998 899999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCce--EEEEecc
Q 000384 515 ARQHNSQ--FILMLER 528 (1590)
Q Consensus 515 A~R~gs~--~ivlv~~ 528 (1590)
|||.|.. .++++..
T Consensus 336 aGR~g~~G~ai~l~~~ 351 (456)
T PRK10590 336 TGRAAATGEALSLVCV 351 (456)
T ss_pred cccCCCCeeEEEEecH
Confidence 9998864 4444443
|
|
| >KOG1817 consensus Ribonuclease [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-36 Score=330.31 Aligned_cols=385 Identities=23% Similarity=0.273 Sum_probs=298.0
Q ss_pred CceeeeccccceeccccHHHHHHHhhcHHHHHHHHHHHhHHHHHHHHhcccCCCCCChHHHHHhhcCCCCCCC-------
Q 000384 988 QMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCES------- 1060 (1590)
Q Consensus 988 ~~~~~l~pe~~~~~~~p~~~~~~~~~lPsi~~rl~~~l~a~~l~~~l~~~~~~~~~~~~lll~AlT~~s~~~~------- 1060 (1590)
+.++.++.+-+....|-.++++.++++|.+.|+|.......-|.+.|+|.|.| ..++.-||||||+...
T Consensus 4 ~~~~~~~~~gf~~tg~~~dv~~h~~m~~~~~~hir~~~~l~~~e~~i~y~f~~----r~~~~lal~h~s~~~~~Gt~~dh 79 (533)
T KOG1817|consen 4 NVTVELSSQGFWKTGIRSDVCQHAMMLPVLTHHIRYHQSLDHLEELIGYTFQD----RCLLQLALTHPSHKLNYGTNPDH 79 (533)
T ss_pred ceeEeeccchHHHhCcchHHHHHHHHHHHHhhhhhHHHhHHHHHHHhCeeecc----hHHHHHHhcCchHHhhCCCCchh
Confidence 34556777778888999999999999999999999999999999999999998 8899999999985210
Q ss_pred --------------------------------------------------CCcchhhhhhhhhHhHHHHHHHHhhCCCCC
Q 000384 1061 --------------------------------------------------FSMERLELLGDSVLKYAVSCHLFLTYPKKH 1090 (1590)
Q Consensus 1061 --------------------------------------------------~n~ErLE~LGDs~Lk~~~s~~l~~~~p~~~ 1090 (1590)
..+||||||||++..+++|.++|..+|...
T Consensus 80 ~kns~tncg~r~~~yg~~~~~~~~kr~~gin~li~imk~l~~~~~~~s~i~hnErle~lgdavve~~ss~hl~~~~~r~~ 159 (533)
T KOG1817|consen 80 AKNSLTNCGIRQPKYGDRKEHIMTKRKLGINTLINIMKRLGVIQPTHSVIKHNERLEFLGDAVVELLSSNHLYFMFPRLE 159 (533)
T ss_pred hhccccccCcCCcccchhHHHHHHHHHhhhhHHHHHHhhccCCCCchhHhHHHHHHHHHhhccHHHHHHHHHHHcccccc
Confidence 168999999999999999999999999999
Q ss_pred cchhHHHHHHhhchHHHHHHHHhCCCccccccccCCCCcccCCCccCCCCCCCCCCCCcccccCCCcccccccceecCCc
Q 000384 1091 EGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKP 1170 (1590)
Q Consensus 1091 eg~ls~~r~~~v~N~~L~~~a~~~gl~~~i~~~~f~~~~w~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1170 (1590)
||.|...|..+|.|.+|+.+|+++.++.|+.-.. |+.
T Consensus 160 eggLatyrta~vqnr~la~lakklrkd~fl~yah---------g~d---------------------------------- 196 (533)
T KOG1817|consen 160 EGGLATYRTAIVQNRHLAKLAKKLRKDEFLLYAH---------GYD---------------------------------- 196 (533)
T ss_pred ccchhHHHHHHHHhHHHHHHHHHHHHHHHHHHhc---------Ccc----------------------------------
Confidence 9999999999999999999999999999987542 110
Q ss_pred CCCCccccccchhhhHHHHHHHHhhhccChhHHHHHHHHhCCC--ccccchhhh---------hhhhcccccccCCChHH
Q 000384 1171 CDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGID--ADLEVSLVD---------DCITRASLRSYVPRINE 1239 (1590)
Q Consensus 1171 ~~~~~~~~~~K~iAD~vEAliGA~~~~~G~~~a~~~~~~~~~~--~~~~~~~~~---------~~~~~~~~~~~~~~~~~ 1239 (1590)
..+-.=....+|+||||+|||.|++||...+....+..... ......|.. +...+......+|....
T Consensus 197 --l~~~~E~Kha~an~feavi~a~~l~g~~~~~e~lfs~~~~~~epvlee~w~~~~ehelq~~ep~gDr~~~~~~Ppllp 274 (533)
T KOG1817|consen 197 --LCFETELKHAMANCFEAVIGAKYLDGGLVVAEKLFSRALFVYEPVLEEEWEHEPEHELQEQEPAGDRVLITKYPPLLP 274 (533)
T ss_pred --hhhHHHHHHHHHHHHHHHhHHHHHhcchHHHHHHHHHHhhccCchhhccccCCCcCcccccCCCccccccccCCCCCc
Confidence 00000124579999999999999999998887654332221 111111110 11122223334455556
Q ss_pred HHHHHHHhCCccCCHHHHHHHHccCCCCC----CcchH----------------HHHHHhcccChHHHHHHHHHHHcCCC
Q 000384 1240 IKDIESKIGYEFTVKFLLQEAITHASVQE----FYCYQ----------------NLYKHLQHCSTLLLSQITEYVKSFPK 1299 (1590)
Q Consensus 1240 ~~~le~~lgy~F~~~~LL~~AlTH~S~~~----~~~ye----------------~L~~~~~~~~~~~~~~i~~~~~~~~~ 1299 (1590)
+.++|+++|..|.+.++|.+|||-+|.+. ..+|| .||.+||+.+||.++-++.-++.-+.
T Consensus 275 ~~~~e~~~g~vF~Hirlla~aft~rs~~~n~Lt~gHNqRLEFLGDSilqlv~T~ily~kFPdhhEGhLSlLRssLVsNet 354 (533)
T KOG1817|consen 275 LTQFEEIIGIVFIHIRLLARAFTLRSIPFNHLTLGHNQRLEFLGDSILQLVMTEILYRKFPDHHEGHLSLLRSSLVSNET 354 (533)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhccCCCchhhhhhhhHHHHHhHHHHHHHHHHHHHHHhCCccccchHHHHHHHHhccHH
Confidence 78999999999999999999999999873 46777 79999999999999988877776222
Q ss_pred CCC------------CCCCC--CCCCCCchhhhHHHHHHhceeecCCCChHHHHHHHHhhhccccCCCCCC---CChhhH
Q 000384 1300 PGE------------TTDSG--PSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLE---LPPLRE 1362 (1590)
Q Consensus 1300 ~~~------------~~~~~--~~~~~~k~l~D~~Ea~iGAi~lDsg~~~~~~~~~~~~~l~~~i~~~~~~---~~P~~~ 1362 (1590)
... ..... .....-|.++|+|||+|||+|+|.|. +.+++|+..++.|.|...+.. .+|++.
T Consensus 355 qakva~~lgf~e~li~n~~~k~~~~lk~K~~ADlfEAfiGaLyvD~~l--e~~~qf~~~l~~Prl~~fi~nq~wndpksk 432 (533)
T KOG1817|consen 355 QAKVADDLGFHEYLITNFDLKDFQNLKLKDYADLFEAFIGALYVDKGL--EYCRQFLRVLFFPRLKEFIRNQDWNDPKSK 432 (533)
T ss_pred HHHHHHHhCCchhhhhCcchhhhhhhhHHHHHHHHHHHHHHHhhcCCc--HHHHHHHHHHhhHHHHHHHHhhhccCcHHH
Confidence 110 00001 12234689999999999999999877 888888777777766543332 489999
Q ss_pred HHHHHHhcCCc------ce-eeeee-eCce--EEEEEEEEEcCeEEEEEEEeCCHHHHHHHHHHHHHHHhhh
Q 000384 1363 LIELCDSLGYF------VK-ENCTL-KGEM--VHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEV 1424 (1590)
Q Consensus 1363 L~e~~~~~~~~------~~-~~~~~-~g~~--~~~~~~v~~~g~~~~~~g~g~skk~Ak~~AA~~AL~~L~~ 1424 (1590)
|+.+|-...+. ++ +++.. .|+. +.|+|+|+++|. .+|+|.|+|.|.|+.+||++||+.++.
T Consensus 433 Lqq~cl~~rys~~~epdip~y~V~~~~gpa~~r~y~Vavyf~gk-rlat~~G~nik~Ae~rAA~~ALe~~~~ 503 (533)
T KOG1817|consen 433 LQQCCLTLRYSLGGEPDIPLYKVLGAKGPANDRNYKVAVYFKGK-RLATGVGSNIKQAEMRAAMQALENLKM 503 (533)
T ss_pred HHHHHHHHhcccCCCCCCceEEEecccCCCCCCceEEEEEECCE-EEeeccCchHhHHHHHHHHHHHHHHHh
Confidence 99999876653 33 33443 3443 679999999995 999999999999999999999999985
|
|
| >PRK01297 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=362.37 Aligned_cols=324 Identities=22% Similarity=0.261 Sum_probs=230.8
Q ss_pred CCCCcHHHHHHHHHHh-cCCEEEEeCCCChHHHHHHHHHHHHHHHHHh----CCCCeEEEEEecChhhHHHHHHHHHhh-
Q 000384 43 NFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKS----NGFKKLIIFLAPTVHLVHQQYDVIRVH- 116 (1590)
Q Consensus 43 ~~~pR~yQ~e~le~~~-~~n~Ii~~~TGsGKTliailli~~~l~~~~~----~~~~~~vl~LvPt~~Lv~Qq~~~i~~~- 116 (1590)
...|+++|.++++.++ ++|+|+.++||||||+++++++.+.+..... ..+..++|||+||++|+.||++.++.+
T Consensus 107 ~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~~~~~~l~ 186 (475)
T PRK01297 107 FPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALT 186 (475)
T ss_pred CCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHHHHHHHhh
Confidence 3558999999999987 5899999999999999999987665531110 012457999999999999999988875
Q ss_pred --cCCceEEEecCCCCCccchHHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCCCcHHHHHHHHH
Q 000384 117 --TDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFY 194 (1590)
Q Consensus 117 --~~~~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~~~~~~im~~~~ 194 (1590)
+++++..++|+...+. +.+......++|+|+||++|++.+.++...++++++|||||||++.+.+ +...++.+.
T Consensus 187 ~~~~~~v~~~~gg~~~~~---~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEah~l~~~~-~~~~l~~i~ 262 (475)
T PRK01297 187 KYTGLNVMTFVGGMDFDK---QLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMG-FIPQVRQII 262 (475)
T ss_pred ccCCCEEEEEEccCChHH---HHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEechHHHHHhcc-cHHHHHHHH
Confidence 4788888998754322 2222223568999999999999998888889999999999999998753 333333333
Q ss_pred hcC--CCCCcEEEEeccCCccCCCCChhcHHHHHHHHHhhcCCeeEeecchhhhhhcccCcceeeEeccCCCCcccchhh
Q 000384 195 HKS--DNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKG 272 (1590)
Q Consensus 195 ~~~--~~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~~~~~~~~l~~~~~~p~~~~~~y~~~~~~~~~l~~ 272 (1590)
... ...++++++|||.... +..+...+ ...|....+ .+.......+
T Consensus 263 ~~~~~~~~~q~i~~SAT~~~~------------~~~~~~~~----------------~~~~~~v~~--~~~~~~~~~~-- 310 (475)
T PRK01297 263 RQTPRKEERQTLLFSATFTDD------------VMNLAKQW----------------TTDPAIVEI--EPENVASDTV-- 310 (475)
T ss_pred HhCCCCCCceEEEEEeecCHH------------HHHHHHHh----------------ccCCEEEEe--ccCcCCCCcc--
Confidence 332 2346899999996421 11111111 001100000 0000000000
Q ss_pred hHHHhhhhhhhhHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHhHHHHHHHHhh
Q 000384 273 KLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQ 352 (1590)
Q Consensus 273 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~ 352 (1590)
T Consensus 311 -------------------------------------------------------------------------------- 310 (475)
T PRK01297 311 -------------------------------------------------------------------------------- 310 (475)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHHHHHHHhhhcCcchhhhccccCCccccccCCCCCHHHHHHHHHHHhcCCCCCcEEEEEEehHHHHHHHHH
Q 000384 353 SSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVER 432 (1590)
Q Consensus 353 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~ta~~L~~ 432 (1590)
... + ..-..+.|...|.+++.. ....++||||+++.+++.+++
T Consensus 311 ----------------~~~-------~-----------~~~~~~~k~~~l~~ll~~---~~~~~~IVF~~s~~~~~~l~~ 353 (475)
T PRK01297 311 ----------------EQH-------V-----------YAVAGSDKYKLLYNLVTQ---NPWERVMVFANRKDEVRRIEE 353 (475)
T ss_pred ----------------cEE-------E-----------EEecchhHHHHHHHHHHh---cCCCeEEEEeCCHHHHHHHHH
Confidence 000 0 000012344444444443 234589999999999999999
Q ss_pred HHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCceEEEEcccccccccCCCccEEEEccCCCCHHHHHHHh
Q 000384 433 FVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSR 512 (1590)
Q Consensus 433 ~L~~~~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fD~p~s~~~yiQr~ 512 (1590)
.|.. .++.+..++|. ++.++|.+++++|++|++++||||+++++|||+|+|++||+||.|.|..+|+||+
T Consensus 354 ~L~~----~~~~~~~~~g~------~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~ 423 (475)
T PRK01297 354 RLVK----DGINAAQLSGD------VPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRI 423 (475)
T ss_pred HHHH----cCCCEEEEECC------CCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEEeCCCCCHHHHHHhh
Confidence 9987 46788899998 8999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCce--EEEEeccc
Q 000384 513 GRARQHNSQ--FILMLERS 529 (1590)
Q Consensus 513 GRA~R~gs~--~ivlv~~~ 529 (1590)
|||||.|+. .++++.++
T Consensus 424 GRaGR~g~~g~~i~~~~~~ 442 (475)
T PRK01297 424 GRTGRAGASGVSISFAGED 442 (475)
T ss_pred CccCCCCCCceEEEEecHH
Confidence 999999875 44444443
|
|
| >COG0571 Rnc dsRNA-specific ribonuclease [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-36 Score=327.27 Aligned_cols=93 Identities=31% Similarity=0.449 Sum_probs=86.7
Q ss_pred HHHHHHHHhcccCCCCCChHHHHHhhcCCCCCCC----CCcchhhhhhhhhHhHHHHHHHHhhCCCCCcchhHHHHHHhh
Q 000384 1027 ASQLREEINCHSRNFHIPSSLILEALTTLGCCES----FSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAV 1102 (1590)
Q Consensus 1027 a~~l~~~l~~~~~~~~~~~~lll~AlT~~s~~~~----~n~ErLE~LGDs~Lk~~~s~~l~~~~p~~~eg~ls~~r~~~v 1102 (1590)
...|.+.+++.|.| ++++.+||||+|+... .||||||||||+||.++++.+||.+||+.+||.||.+|+.+|
T Consensus 8 ~~~l~~~lg~~f~~----~~lL~~AltH~S~~~e~~~~~~nERLEFLGDavL~l~vae~Lf~~yP~~~EG~Ls~~ra~lV 83 (235)
T COG0571 8 LEALEKKLGYTFKD----KELLEQALTHRSYANEHKAVENNERLEFLGDAVLGLVVAEYLFKKYPNLPEGELSKLRAALV 83 (235)
T ss_pred HHHHHHHhCCCcCC----HHHHHHHhcCcchhccccCCcchHHHHhhHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 35577889999988 8999999999999654 489999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHhCCCccccccc
Q 000384 1103 CNSTLHKLGTDRKLQGYIRDS 1123 (1590)
Q Consensus 1103 ~N~~L~~~a~~~gl~~~i~~~ 1123 (1590)
|+..|+.+|+.+||+.||+..
T Consensus 84 ~~~~La~ia~~l~l~~~l~lg 104 (235)
T COG0571 84 SEESLAEIARELGLGDYLRLG 104 (235)
T ss_pred HHHHHHHHHHHhCccchhhcc
Confidence 999999999999999999865
|
|
| >PRK11634 ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=367.13 Aligned_cols=322 Identities=21% Similarity=0.267 Sum_probs=239.1
Q ss_pred CCCCCcHHHHHHHHHHh-cCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhhc---
Q 000384 42 INFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT--- 117 (1590)
Q Consensus 42 ~~~~pR~yQ~e~le~~~-~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~--- 117 (1590)
...+|+++|.++++.++ ++++|+.+|||||||+++++++.+.+. .......+|||+||++|+.|+++++..+.
T Consensus 25 G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~---~~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~ 101 (629)
T PRK11634 25 GYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLD---PELKAPQILVLAPTRELAVQVAEAMTDFSKHM 101 (629)
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhh---hccCCCeEEEEeCcHHHHHHHHHHHHHHHhhc
Confidence 34579999999999998 489999999999999999998776654 22334579999999999999999988753
Q ss_pred -CCceEEEecCCCCCccchHHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCCCcHHHHHHHHHhc
Q 000384 118 -DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHK 196 (1590)
Q Consensus 118 -~~~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~~~~~~im~~~~~~ 196 (1590)
++.+..++|+...+.+ ......+++|+|+||+.|++.+.++.+.++++.+||+||||++... .|...+..+...
T Consensus 102 ~~i~v~~~~gG~~~~~q----~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ml~~-gf~~di~~Il~~ 176 (629)
T PRK11634 102 RGVNVVALYGGQRYDVQ----LRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRM-GFIEDVETIMAQ 176 (629)
T ss_pred CCceEEEEECCcCHHHH----HHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHHhhc-ccHHHHHHHHHh
Confidence 6888889988654321 2233457899999999999999999999999999999999998765 343334444445
Q ss_pred CCCCCcEEEEeccCCccCCCCChhcHHHHHHHHHhhcCCeeEeecchhhhhhcccCcceeeEeccCCCCcccchhhhHHH
Q 000384 197 SDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEV 276 (1590)
Q Consensus 197 ~~~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~~~~~~~~l~~~~~~p~~~~~~y~~~~~~~~~l~~~~~~ 276 (1590)
.+...+++++|||.... +..+... +...|....+....... .
T Consensus 177 lp~~~q~llfSAT~p~~------------i~~i~~~----------------~l~~~~~i~i~~~~~~~--~-------- 218 (629)
T PRK11634 177 IPEGHQTALFSATMPEA------------IRRITRR----------------FMKEPQEVRIQSSVTTR--P-------- 218 (629)
T ss_pred CCCCCeEEEEEccCChh------------HHHHHHH----------------HcCCCeEEEccCccccC--C--------
Confidence 56678899999996321 2222211 11111111100000000 0
Q ss_pred hhhhhhhhHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHhHHHHHHHHhhhhHH
Q 000384 277 SWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQ 356 (1590)
Q Consensus 277 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (1590)
.+...|.
T Consensus 219 --------------~i~q~~~----------------------------------------------------------- 225 (629)
T PRK11634 219 --------------DISQSYW----------------------------------------------------------- 225 (629)
T ss_pred --------------ceEEEEE-----------------------------------------------------------
Confidence 0000000
Q ss_pred HHHHHHHHHHHHhhhcCcchhhhccccCCccccccCCCCCHHHHHHHHHHHhcCCCCCcEEEEEEehHHHHHHHHHHHhh
Q 000384 357 CKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKK 436 (1590)
Q Consensus 357 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~ 436 (1590)
......|...|.++|... ...++||||+++..+..|++.|..
T Consensus 226 -----------------------------------~v~~~~k~~~L~~~L~~~---~~~~~IVF~~tk~~a~~l~~~L~~ 267 (629)
T PRK11634 226 -----------------------------------TVWGMRKNEALVRFLEAE---DFDAAIIFVRTKNATLEVAEALER 267 (629)
T ss_pred -----------------------------------EechhhHHHHHHHHHHhc---CCCCEEEEeccHHHHHHHHHHHHh
Confidence 000123556666666543 234799999999999999999987
Q ss_pred CCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCceEEEEcccccccccCCCccEEEEccCCCCHHHHHHHhcccc
Q 000384 437 VPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRAR 516 (1590)
Q Consensus 437 ~~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fD~p~s~~~yiQr~GRA~ 516 (1590)
.++.+..+||+ |++.+|.+++++|++|+++|||||+++++|||+|++++||+||.|.++.+|+||+||+|
T Consensus 268 ----~g~~~~~lhgd------~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtG 337 (629)
T PRK11634 268 ----NGYNSAALNGD------MNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTG 337 (629)
T ss_pred ----CCCCEEEeeCC------CCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhcccc
Confidence 57889999998 89999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCce--EEEEeccch
Q 000384 517 QHNSQ--FILMLERSE 530 (1590)
Q Consensus 517 R~gs~--~ivlv~~~E 530 (1590)
|.|.. .++++...|
T Consensus 338 RaGr~G~ai~~v~~~e 353 (629)
T PRK11634 338 RAGRAGRALLFVENRE 353 (629)
T ss_pred CCCCcceEEEEechHH
Confidence 99863 666665543
|
|
| >PRK04537 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=363.21 Aligned_cols=322 Identities=20% Similarity=0.250 Sum_probs=232.9
Q ss_pred CCCCCcHHHHHHHHHHh-cCCEEEEeCCCChHHHHHHHHHHHHHHHHH----hCCCCeEEEEEecChhhHHHHHHHHHhh
Q 000384 42 INFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIK----SNGFKKLIIFLAPTVHLVHQQYDVIRVH 116 (1590)
Q Consensus 42 ~~~~pR~yQ~e~le~~~-~~n~Ii~~~TGsGKTliailli~~~l~~~~----~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~ 116 (1590)
....|+++|.++++.++ ++|+|+.+|||||||+++++++.+.+.... ......++|||+||++|+.|+++.+..+
T Consensus 28 g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~~~l 107 (572)
T PRK04537 28 GFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVKF 107 (572)
T ss_pred CCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHHHHHH
Confidence 45679999999999998 589999999999999999998776553111 1112357999999999999999998876
Q ss_pred ---cCCceEEEecCCCCCccchHHHHHhcCCCcEEEEcHHHHHHHHHhc-CcCccceeEEEEeccccccCCCcHHHHHHH
Q 000384 117 ---TDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA-FLSLDIVCFIVIDECHHATGNHPYTKIMKE 192 (1590)
Q Consensus 117 ---~~~~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~~-~~~l~~i~lII~DEaH~~~~~~~~~~im~~ 192 (1590)
.++++..++|+...+.+ ......+++|+|+||+.|++.+.+. .+.+..+++|||||||++... .|...+..
T Consensus 108 ~~~~~i~v~~l~Gg~~~~~q----~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh~lld~-gf~~~i~~ 182 (572)
T PRK04537 108 GADLGLRFALVYGGVDYDKQ----RELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDL-GFIKDIRF 182 (572)
T ss_pred hccCCceEEEEECCCCHHHH----HHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCHHHHhhc-chHHHHHH
Confidence 46889999998654321 1222346899999999999998764 577899999999999999765 34444444
Q ss_pred HHhcCCC--CCcEEEEeccCCccCCCCChhcHHHHHHHH-HhhcCCeeEeecchhhhhhcccCcceeeEeccCCCCcccc
Q 000384 193 FYHKSDN--KPKVFGMTASPVVRKGVSSAMDCEGQISEL-ESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSD 269 (1590)
Q Consensus 193 ~~~~~~~--~priLgLTATP~~~~~~~~~~~~~~~i~~L-e~~l~~~i~~~~~~~~l~~~~~~p~~~~~~y~~~~~~~~~ 269 (1590)
++..... ..+++++|||.... +..+ ...+. .|........ ......
T Consensus 183 il~~lp~~~~~q~ll~SATl~~~------------v~~l~~~~l~-----------------~p~~i~v~~~--~~~~~~ 231 (572)
T PRK04537 183 LLRRMPERGTRQTLLFSATLSHR------------VLELAYEHMN-----------------EPEKLVVETE--TITAAR 231 (572)
T ss_pred HHHhcccccCceEEEEeCCccHH------------HHHHHHHHhc-----------------CCcEEEeccc--cccccc
Confidence 4433332 56899999996421 1111 11111 1111000000 000000
Q ss_pred hhhhHHHhhhhhhhhHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHhHHHHHHH
Q 000384 270 LKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEI 349 (1590)
Q Consensus 270 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~ 349 (1590)
T Consensus 232 -------------------------------------------------------------------------------- 231 (572)
T PRK04537 232 -------------------------------------------------------------------------------- 231 (572)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhhhHHHHHHHHHHHHHHhhhcCcchhhhccccCCccccccCCCCCHHHHHHHHHHHhcCCCCCcEEEEEEehHHHHHH
Q 000384 350 YRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKV 429 (1590)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~ta~~ 429 (1590)
+... + .......|+..|..++.. ..+.++||||+++..++.
T Consensus 232 ------------------i~q~-------~-----------~~~~~~~k~~~L~~ll~~---~~~~k~LVF~nt~~~ae~ 272 (572)
T PRK04537 232 ------------------VRQR-------I-----------YFPADEEKQTLLLGLLSR---SEGARTMVFVNTKAFVER 272 (572)
T ss_pred ------------------eeEE-------E-----------EecCHHHHHHHHHHHHhc---ccCCcEEEEeCCHHHHHH
Confidence 0000 0 000012344555555543 235689999999999999
Q ss_pred HHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCceEEEEcccccccccCCCccEEEEccCCCCHHHHH
Q 000384 430 VERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYI 509 (1590)
Q Consensus 430 L~~~L~~~~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fD~p~s~~~yi 509 (1590)
|++.|.. .++.+..+||. |+..+|.+++++|++|+++|||||+++++|||+|++++||+||.|.+..+|+
T Consensus 273 l~~~L~~----~g~~v~~lhg~------l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VInyd~P~s~~~yv 342 (572)
T PRK04537 273 VARTLER----HGYRVGVLSGD------VPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYV 342 (572)
T ss_pred HHHHHHH----cCCCEEEEeCC------CCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEEcCCCCCHHHHh
Confidence 9999987 47889999998 8999999999999999999999999999999999999999999999999999
Q ss_pred HHhccccccCce--EEEEecc
Q 000384 510 QSRGRARQHNSQ--FILMLER 528 (1590)
Q Consensus 510 Qr~GRA~R~gs~--~ivlv~~ 528 (1590)
||+||+||.|.. .+.++.+
T Consensus 343 qRiGRaGR~G~~G~ai~~~~~ 363 (572)
T PRK04537 343 HRIGRTARLGEEGDAISFACE 363 (572)
T ss_pred hhhcccccCCCCceEEEEecH
Confidence 999999998864 5555544
|
|
| >KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-37 Score=397.72 Aligned_cols=1172 Identities=20% Similarity=0.196 Sum_probs=621.1
Q ss_pred HHhcCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhhcCCceEEEecCCCCCccch
Q 000384 56 VAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDS 135 (1590)
Q Consensus 56 ~~~~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~~~~v~~~~G~~~~d~~~~ 135 (1590)
.+...+++....++-+++++.......+..........--.+|.|+.+..+.+..+.++..+...+..++|..+.+.|+.
T Consensus 255 ~~~~~e~~~~~~~~~~~~l~~~~~~~~v~k~~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~ 334 (1606)
T KOG0701|consen 255 YIHQFEVLRKYEPHDVFRLIHESVCPLVDKEYLEKIETLSGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKS 334 (1606)
T ss_pred hhcccceeeeecccccceeehhhcCchhhHHHHHhhhhhhheeecccchHHHHHHHHHHHhhccCcceeeccccCccchh
Confidence 33447889999999999998855433332211112222346889999999999999999998888888999999999999
Q ss_pred HHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCCCcHHHHHHHHHhcCC--CCCcEEEEeccCCcc
Q 000384 136 QCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSD--NKPKVFGMTASPVVR 213 (1590)
Q Consensus 136 ~~w~~~~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~~~~~~im~~~~~~~~--~~priLgLTATP~~~ 213 (1590)
..|...+....|+..+.+..++.|.+..+.+..+++...++||+....+.|+..+..+.+... ...-++|+|..++.-
T Consensus 335 ~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~vq~~~r~~~~~~~~~i~~~t~~~~~~ 414 (1606)
T KOG0701|consen 335 FKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKCNLVVLFDAPTYYRSYVQKKGRARAADSYLVILGETLSAVSL 414 (1606)
T ss_pred hHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhhhhheeccCcchHHHHHHhhcccccchhhHHHHHhhhhhhhh
Confidence 999999999999999999999999998888999999999999999998999999998877653 346678888887765
Q ss_pred CCCCChhcHHHHHHHHHhhcCCeeEeecchhhhhhcccCcceeeEeccCCCC-cccchhhhHHHhhhhhhhhH-------
Q 000384 214 KGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKF-CGSDLKGKLEVSWSKFDASL------- 285 (1590)
Q Consensus 214 ~~~~~~~~~~~~i~~Le~~l~~~i~~~~~~~~l~~~~~~p~~~~~~y~~~~~-~~~~l~~~~~~~~~~~~~~~------- 285 (1590)
++.+...........|....++.+.....+.+...+++-+....+.+..... .....-..+... ...+..+
T Consensus 415 ~~~s~~~~~~i~~~~l~~~~~~~v~~~~~~~e~~~~~~~~~~v~~~~~~p~~~~~~~~~~~l~~~-~~~d~~~~~~gk~~ 493 (1606)
T KOG0701|consen 415 KNPSYAYTEQIPRPQLFLRLDANVNKYCARAELLKHVPFLSTVVLPVNSPLKMCIVGLCLKLHKI-GELDDCLHPKGKEP 493 (1606)
T ss_pred cChhHhHHhhcccchhhcccccchHHHHHHHHhccCCCcceeEEEecCchHHHHHHHhHHHHHHh-hhhhhhhcccccch
Confidence 5422222333334555555555555555566666666666655555542110 000000000000 0000000
Q ss_pred -HHHH---hhhhhh----hccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHhHHHHHH---HHh-hh
Q 000384 286 -SKLQ---GSQLNC----YKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECE---IYR-QS 353 (1590)
Q Consensus 286 -~~l~---~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~---~~~-~~ 353 (1590)
..+. ....+. +.--...-+..+..++.............|-||....+..............+ .+. ..
T Consensus 494 ~~~~~~~~~~~~ee~~~~~~~~~~~s~~~~~~~k~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~e~~n~~~r~~~~~~~ 573 (1606)
T KOG0701|consen 494 KACLEEVDTEEEEEVLQGFEPRPGSSKRRQQYLKHIARERNDSVPKADQPCYLYVIGLELTMPLPEERNFERRKLYPPED 573 (1606)
T ss_pred HHhhhhhccccchhhccccCCCCCcccccccccchhHHHhcccccCCCCceeeeeeccceecCCchhcccccccccCchh
Confidence 0000 000000 00000000000001111112222222333334432222111111000000000 000 00
Q ss_pred hHHHHHH---------------------HHHHHHHHhhhcCcc---hh-----hhccccCCccccccCCCCCHHHHHHHH
Q 000384 354 SLQCKYF---------------------LEEVLHVIGSALPLA---DK-----IFLDFGFDYSKAVDLGYISTKLHELLQ 404 (1590)
Q Consensus 354 ~~~~~~~---------------------~~~~~~~i~~~~~~~---~~-----~~~~~~~~~~~~~~~~~~s~K~~~L~~ 404 (1590)
...+... .-..+......+... +. .....+... -......+.++...|+.
T Consensus 574 ~~~~~~~l~~~~i~~~~~~~~a~~sG~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~v~~-~~~~~~~~~~~~~~l~~ 652 (1606)
T KOG0701|consen 574 LTYCFGILTAKLIPKIPHFPVATRSGEVKVSLLLAFSEALVKSEQLDEIQEFLNYIFTEVLR-LAKINLEFDPKTAELIE 652 (1606)
T ss_pred hhhhhcccchhhhcccccccceeccCchhHHHHHhhhhhhcchhhccCcchhcccchhhhhh-hhccccccCCchhhHHH
Confidence 0000000 000000000000000 00 000000000 11122344668888888
Q ss_pred HHHhcCCCCCcEEEEEEehHHHHHHHHHHHhhCCCCCCeeEE-EEEcCCCCCCCCCHHHHHHHHHHhcCCCceEEEEccc
Q 000384 405 LFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVA-YLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDV 483 (1590)
Q Consensus 405 lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~-~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~~vLVaT~v 483 (1590)
.+.-+....+.++++|+..--++-++-..+...+.....+.. ++.+..+ +.+....|......|+.+++.++++|+.
T Consensus 653 ~llp~~~~~~~~~~~i~~k~l~~iv~~~~~~~~~~~~~~~~~~~f~~~~~--~~~~~~~rn~~~~~~~~~~v~~~~~pss 730 (1606)
T KOG0701|consen 653 TLLPLNVLADKRAIIIVRKFLEAIVAPSDLMPIPSKDEVRKAKYFDGEDS--QDAVGMYRNDDQPQFYVAEVLPLLAPSS 730 (1606)
T ss_pred HhcccccccccchhhhHHHHHHHHhCcccccCCCChhhhhhhhhcccccc--hhhhhhhhcccccceeeeeeeeeccchh
Confidence 776555566778999888766665554444333333334323 3333221 1233447888899999999999999999
Q ss_pred ccccccCCCccEEEEccCCCCHHHHHHHhccccccCceEEEEeccc--------------hHHhhhhhhcC----Chhhh
Q 000384 484 IEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERS--------------ERSVTDTALSR----DPEAC 545 (1590)
Q Consensus 484 leeGIDip~~~~VI~fD~p~s~~~yiQr~GRA~R~gs~~ivlv~~~--------------E~~~~~~~~~~----~~~~~ 545 (1590)
+.+|.|+..|+.|+++|.-.+..+++|++||++..++.+.+|+++. ++.+++....+ .|...
T Consensus 731 ~~~g~~~~~~~~v~~~~~~~~i~~~~q~~~~~~~~~s~l~~~~~r~~~~~~~~l~~~s~~~e~~~~es~~~~~~~h~~~~ 810 (1606)
T KOG0701|consen 731 LFPGLDYETFNEVYRFKYALTITSLNQSLLDVDHTSSRLNLLVPRGDNQKGSALPNSSSETERLKDESLEHSLIIHPALA 810 (1606)
T ss_pred cCCCcchheeeeeeeccccchhhhccccccccccchhhhcccCchhhccccceeecccchhhhhhHHHhhccCCCCcCcc
Confidence 9999999999999999999999999999999999999999999761 12222211110 11111
Q ss_pred h-hhccccccccceeecCCCceecccChHHHHHHHhhhCCCCCCCCCcceEEEEecCCeEEEEEEccCCCCcceeecCCc
Q 000384 546 F-LKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQTIVGPTS 624 (1590)
Q Consensus 546 ~-l~~~~~~~~~~~~v~~tga~lt~~~ai~ll~~yc~~Lp~d~~~~~~P~~~~~~~~~~~~~~v~LP~~~~l~~~~g~~~ 624 (1590)
. .......+...|.+..||+.++...|..+|.+||+.+++..|...++.. ......|.|.+.+|..+|+..+.|...
T Consensus 811 s~~~~~~~~p~~v~~v~~tg~~~s~~ta~~li~~~~~~i~~~~f~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 888 (1606)
T KOG0701|consen 811 SLWRRAVCLPEILYRVLLTGALVSLSTAVDLIPHDFSSILSKSFEKEASKS--DKNKDEYSCDLALPKENPVKQVLGKAN 888 (1606)
T ss_pred hhhhhhccCcchheeeccccceeeeecccchhhhhhhhccchhhccccccC--CCCccccceeecccCCCchhhhhchhh
Confidence 1 0111122345688899999999999999999999877777776554432 123368999999999999998899999
Q ss_pred cCHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccccccccCCCCCCCCCccccccccccccccccCcccCCCceeE
Q 000384 625 RNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLPGAGTTKRKELHGTTPIRALSGRWGEKCGVIL 704 (1590)
Q Consensus 625 ~sk~~Ak~~AAf~Ac~~L~~~g~ldd~L~P~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 704 (1590)
...+.++++++++||..||++|.++|++.|......... +.......+ + + + ....+.....+...
T Consensus 889 ~~~~~~q~av~l~~~~~~~~~~~~~d~~~~n~~~~~~~~---~~~~~i~~a-~--~--------p-~~~~~~~~~~~~~s 953 (1606)
T KOG0701|consen 889 QLDKVNQQAVELQECIQLHEVGALDDHLVFNKGVADQVL---AKRESISLA-T--R--------P-ELVSPFIPEPPTTS 953 (1606)
T ss_pred hhhHHHhhhhhhhhhhhhhcccccccccccCccccchhh---hhccccccc-c--C--------c-ccccccccCCchhh
Confidence 999999999999999999999999999998653211000 000000000 0 0 0 01111111111112
Q ss_pred EEEEEEeeeccccccccceEEeeccccCCcCCCceeeEeeecceeEEEEecCcccccCHHHHHHHHHHHHHHHHHhhhhc
Q 000384 705 HAYKFNFACSIVTEIYSGFVLLIESELDNDVGNFELELYLVSKTVKATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKL 784 (1590)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~f~~~~~~~ 784 (1590)
|.|.....+...+. .+...+.+...- .++-..-..+..-..+++. ..+.+++. .|...+ +..
T Consensus 954 ~~~~n~l~~~~~~~--~~~~s~~~~~~~----~~E~~e~i~n~~~~Fs~~~-~~i~~~~s----------~LLEAl-T~~ 1015 (1606)
T KOG0701|consen 954 HLISNRLSPSSPSN--SDLNSLLPNKRS----DWEAVEKILNFRYVFSISL-ASIALSTS----------LLLEAL-TTS 1015 (1606)
T ss_pred hhhhhhcCccCCCC--CCcccccccccc----cccccccccccceeccccc-cccccchh----------HHHHHh-hcC
Confidence 22221111110000 011111111000 0000000000000000000 00111111 111110 000
Q ss_pred hhcccCCCCcchhhcccccCCCCCCceEEEEeccccccCCCCCcccccCccccccchhhHhhhhccccccccCCCCCCCC
Q 000384 785 FVKSKSSGSREFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCASVVEFIKEKSFLGAAQCNNNGGNSS 864 (1590)
Q Consensus 785 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Pl~~~~~~~~~~~~IDw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 (1590)
.+. .++..+-.. .-+.+.++|..... -++......+.+
T Consensus 1016 -~~~----------------------~s~s~Erle----~Lgds~Lk~avsr~-----l~L~ypd~~Egq---------- 1053 (1606)
T KOG0701|consen 1016 -SCQ----------------------DSFSLERLE----LLGDSLLKLAVSRH-----LFLTYPDLDEGQ---------- 1053 (1606)
T ss_pred -ccc----------------------cchhHHHHH----hhHHHHHHHHHHHH-----HHHhCCcccchh----------
Confidence 000 000000000 00112233332211 000000000000
Q ss_pred CCCCCCCCCCCCCCcceeccCCCcCcccccCcEEEeccCCc-eEEEEE-------ecCCCCCCCCCCCC--CCCCCchHH
Q 000384 865 PCRTSPCKTGCHGKDVIHLANGSVDAKNLKDMVVLAIHTGR-IYSIVE-------IVNNSSAESPFDGN--TDDDSKTFV 934 (1590)
Q Consensus 865 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~vV~~~~~~~-~y~v~~-------i~~d~~p~spf~~~--~~~~~~ty~ 934 (1590)
.-+.++.-++.+.+ ..+....|. -|+..+ +.+.. .+.++.. ....--+|.
T Consensus 1054 ---------------ls~lr~~~~~~~nl---~~la~~~gl~~~~~~~~fep~~~~~p~~--~~~~~~~~k~~~~~~~~~ 1113 (1606)
T KOG0701|consen 1054 ---------------LSRLRDVNVSNDNL---ARLAVKKGLYSYLRHEGFEPSRWWVPGQ--LDVNNVDCKDLSGDQNYI 1113 (1606)
T ss_pred ---------------HHHHHHhcccccch---hhhhhcccchhhcccccccccccccccc--cccccccccccccccccc
Confidence 00000000000000 000000010 011000 00100 0111100 000112333
Q ss_pred HHHhhhccccccCCCCceEEeeccCCccccccccCCCCCCCCCCCCCCCCCCC-Cceeeecccccee-----ccccHHHH
Q 000384 935 NYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKP-QMHVHMPPELLVR-----VDVPISVV 1008 (1590)
Q Consensus 935 ~yy~~k~~~~i~~~~QPlL~~~~~~~~~n~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~pe~~~~-----~~~p~~~~ 1008 (1590)
+|+.....+ +.+... . + ...+....+. ...+.+++.++.+ -.+-.+.-
T Consensus 1114 ~~~e~~e~~-------~df~e~----------~----~-----~~~~~~~~~~~~~~~~~~ks~adl~eaLlga~~vD~~ 1167 (1606)
T KOG0701|consen 1114 LYKELDEKI-------KDFQEA----------M----E-----KEDGDSRSKGGDHDWLAPKSPADLLEALLGAIYVDGG 1167 (1606)
T ss_pred cccchhhhh-------hHHHHh----------h----h-----ccCCcccccccccceecCCCHHHHHHHHHHhhhhhcc
Confidence 332211100 000000 0 0 0000000000 0112122222111 12333334
Q ss_pred HHHhhcHHHHHHHHHHHhHHHHH---------------------------HHHhcccCCCCCChHHHHHhhcCCCCCC-C
Q 000384 1009 KSLYLLPSVMQRLESLMLASQLR---------------------------EEINCHSRNFHIPSSLILEALTTLGCCE-S 1060 (1590)
Q Consensus 1009 ~~~~~lPsi~~rl~~~l~a~~l~---------------------------~~l~~~~~~~~~~~~lll~AlT~~s~~~-~ 1060 (1590)
..+.+.+.+.+.|.-..+..+.. +.+++.+. .....++.+|++|++... +
T Consensus 1168 ~~~~~~~~~~~~lk~~~~~~dy~~~e~~~~~~~~~~~s~~~~~~~~~~ler~l~~~~~--~~~~~l~~~~~~~~s~~~~~ 1245 (1606)
T KOG0701|consen 1168 LLETFETIGDSFLKWSITNYDYDTLEPKHAGKLSFRRSKIVKKKNLDRLERELGLKFK--FLEAALLVQAFIHCSLRAEG 1245 (1606)
T ss_pred chhhhhHHHHHHHhhhhhhhhhhcccccchhhhhhhhhhHhhhhhHHHHHHhhcccch--hhhhhcchhhcccccccccc
Confidence 44455666666666444333321 22222000 223678899999998743 3
Q ss_pred CC-cchhhhhhhhhHhHHHHHHHHhhCCCCCcchhHHHHHHhhc--hHHHHHHHHhCCCccccccccCCCCcccCCCccC
Q 000384 1061 FS-MERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVC--NSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLS 1137 (1590)
Q Consensus 1061 ~n-~ErLE~LGDs~Lk~~~s~~l~~~~p~~~eg~ls~~r~~~v~--N~~L~~~a~~~gl~~~i~~~~f~~~~w~pp~~~~ 1137 (1590)
.+ +||++|+||++|++.++.+.|..+.....|.++..|..-++ |.+++..+....|+.++++..
T Consensus 1246 ld~~erl~~~~d~vld~l~~~~~~~~~~~~~~~~lt~~~~~~v~~l~e~~~~~~v~~~l~~~l~~~s------------- 1312 (1606)
T KOG0701|consen 1246 LDATERLEFLGDAVLDKLSDKHPFEVFIRLDGGELTDLREAGVNTLNENDLNVKVPKSLPYNLLDQS------------- 1312 (1606)
T ss_pred cchHHHHHhhHHHHHHHHHHhhhHhhhhcccCcchhhhhhhhhhhhhhcccccccCCcceeeehhhc-------------
Confidence 34 89999999999999999999999999999999999999999 888887777777776666542
Q ss_pred CCCCCCCCCCCcccccCCCcccccccceecCCcCCCCccccccchhhhHHHHHHHHhhhccChhHHHHHHHHhCCCcccc
Q 000384 1138 LRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLE 1217 (1590)
Q Consensus 1138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~iAD~vEAliGA~~~~~G~~~a~~~~~~~~~~~~~~ 1217 (1590)
.+.+|.++|++|++||++...+|...++-+|+|.+....+.
T Consensus 1313 ---------------------------------------~~~~K~i~d~v~sli~~~~~~~~~~s~l~~~~~~~~l~~i~ 1353 (1606)
T KOG0701|consen 1313 ---------------------------------------SVLEKSIADSVEALIGASLSEGGPSSALLFMDWPPILLDIP 1353 (1606)
T ss_pred ---------------------------------------cCccchHHHHHHHhhhhhhhccCCCcccccccccccccccc
Confidence 25689999999999999999999999998887776555443
Q ss_pred chhhhhhhhcccccccCCChHHHHHHHHHhCCccCCHHHHHHHHccCCCCC---CcchH---------------------
Q 000384 1218 VSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQE---FYCYQ--------------------- 1273 (1590)
Q Consensus 1218 ~~~~~~~~~~~~~~~~~~~~~~~~~le~~lgy~F~~~~LL~~AlTH~S~~~---~~~ye--------------------- 1273 (1590)
........ .... .....+..+|+.+||.|.++.++.+|+||.||.. ..|||
T Consensus 1354 es~~~~~~----~~~~-~~l~~~~~~e~~l~y~f~~~~~l~~a~th~s~~~~~~~~C~qrleflgd~vld~~it~hl~~~ 1428 (1606)
T KOG0701|consen 1354 ESIASPDS----IDEL-RQLLSFGKFEEKLNYRFKLKPYLTQATTHASYIYNRITDCYQRLEFLGDAVLDYLITKHLYED 1428 (1606)
T ss_pred ccccccch----hHHH-HHHHHHHhhhcccchhhhhhhcccccccccccccCccchhhhhHHHhHHhhhhhhhhhccccc
Confidence 32111000 0000 0112377889999999999999999999999976 67888
Q ss_pred -----------------------------HHHHHhcccChHHHHHHHHHHHcCCC--CCCCCCCCCCCCCCchhhhHHHH
Q 000384 1274 -----------------------------NLYKHLQHCSTLLLSQITEYVKSFPK--PGETTDSGPSMKAPKALGDLLES 1322 (1590)
Q Consensus 1274 -----------------------------~L~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~k~l~D~~Ea 1322 (1590)
.+++++.+.++++...|..+...... .....++.+.+..||++||++|+
T Consensus 1429 ~~~~sp~~~td~rsa~vnn~~~a~~av~~~~~K~~~~~~~~l~~~I~~~v~~~~q~~~~~~~~~~edievpKa~gdi~es 1508 (1606)
T KOG0701|consen 1429 PRQHSPGVLTDLRSALVNNTIFASLAVKADLHKFIIAASPGLIHNIDRFVSFQLQSNLDSLFGWEEDIEVPKALGDIFES 1508 (1606)
T ss_pred ccccCchhhhhhhhHhhccccchhhHHhhcchhHHHhhccccccchHHHHHHHHhhccccCCCchhhcccchhhhhhhhc
Confidence 34444555555544444444433211 11112456778999999999999
Q ss_pred HHhceeecCCCChHHHHHHHHhhhccccCCCCCCCChhhHHHHHHHhcCCcceeeeeeeCceEEEEEEEEEcCeEEEEEE
Q 000384 1323 IVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELCDSLGYFVKENCTLKGEMVHAELRLQLKDVLLVGEG 1402 (1590)
Q Consensus 1323 ~iGAi~lDsg~~~~~~~~~~~~~l~~~i~~~~~~~~P~~~L~e~~~~~~~~~~~~~~~~g~~~~~~~~v~~~g~~~~~~g 1402 (1590)
+.||||+|+|...+.+..-+.+.......++....||++.+...+.+. .+++..+ +.|.+.+. -...|
T Consensus 1509 iagai~~dsg~~~~~~~~~~~a~p~~s~~~E~~~~h~~~~~~~~~~k~---------~d~~~~~--~tv~~~~~-~~~~~ 1576 (1606)
T KOG0701|consen 1509 IAGAIKLDSGNMMEPCIEKFWALPPRSPIRELLELHPERALFGKCEKV---------ADAGKVR--VTVDVFNK-EVFAG 1576 (1606)
T ss_pred ccceeecCcccccchHhhcCcCCCCccchhhhccccceeeccchhhhh---------hhccceE--EEEEeccc-chhhh
Confidence 999999999965555544333333222223334445555444333321 1222223 33433343 34579
Q ss_pred EeCCHHHHHHHHHHHHHHHhhhh
Q 000384 1403 QERSRKAAKGKAASQLLKKLEVC 1425 (1590)
Q Consensus 1403 ~g~skk~Ak~~AA~~AL~~L~~~ 1425 (1590)
.|.+++.||..|++.|++.|...
T Consensus 1577 ~g~~~~~aK~s~~k~A~~ll~~~ 1599 (1606)
T KOG0701|consen 1577 EGRNYRIAKASAAKAALKLLKKL 1599 (1606)
T ss_pred cchhhhhhhhhHHHHHHHHHHHh
Confidence 99999999999999999999874
|
|
| >PTZ00424 helicase 45; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-34 Score=351.10 Aligned_cols=321 Identities=21% Similarity=0.277 Sum_probs=232.2
Q ss_pred CCCCcHHHHHHHHHHh-cCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhhc---C
Q 000384 43 NFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT---D 118 (1590)
Q Consensus 43 ~~~pR~yQ~e~le~~~-~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~---~ 118 (1590)
...|+++|.++++.++ ++|+|+.+|||||||+++++++...+. ......++|||+|+++|+.|+.+.++... +
T Consensus 48 ~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~---~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~ 124 (401)
T PTZ00424 48 FEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLID---YDLNACQALILAPTRELAQQIQKVVLALGDYLK 124 (401)
T ss_pred CCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhc---CCCCCceEEEECCCHHHHHHHHHHHHHHhhhcC
Confidence 3469999999999997 589999999999999999998777654 22345679999999999999999888764 4
Q ss_pred CceEEEecCCCCCccchHHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCCCcHHHHHHHHHhcCC
Q 000384 119 FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSD 198 (1590)
Q Consensus 119 ~~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~~~~~~im~~~~~~~~ 198 (1590)
..+..+.|+... ...|.....+.+|+|+||+.|.+.+.++...++++++||+||||++... .|...+...+....
T Consensus 125 ~~~~~~~g~~~~----~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~~~~-~~~~~~~~i~~~~~ 199 (401)
T PTZ00424 125 VRCHACVGGTVV----RDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEMLSR-GFKGQIYDVFKKLP 199 (401)
T ss_pred ceEEEEECCcCH----HHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHHHhc-chHHHHHHHHhhCC
Confidence 566667776542 2334555567899999999999999988888999999999999999765 34444444555566
Q ss_pred CCCcEEEEeccCCccCCCCChhcHHHHHHHHHhhcCCeeEeecchhhhhhcccCcceeeEeccCCCCcccchhhhHHHhh
Q 000384 199 NKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSW 278 (1590)
Q Consensus 199 ~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~~~~~~~~l~~~~~~p~~~~~~y~~~~~~~~~l~~~~~~~~ 278 (1590)
..++++++|||+... +..+... +...|............ ..
T Consensus 200 ~~~~~i~~SAT~~~~------------~~~~~~~----------------~~~~~~~~~~~~~~~~~--~~--------- 240 (401)
T PTZ00424 200 PDVQVALFSATMPNE------------ILELTTK----------------FMRDPKRILVKKDELTL--EG--------- 240 (401)
T ss_pred CCcEEEEEEecCCHH------------HHHHHHH----------------HcCCCEEEEeCCCCccc--CC---------
Confidence 778999999997421 1111111 11111111000000000 00
Q ss_pred hhhhhhHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHhHHHHHHHHhhhhHHHH
Q 000384 279 SKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCK 358 (1590)
Q Consensus 279 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (1590)
....+....
T Consensus 241 -------------~~~~~~~~~---------------------------------------------------------- 249 (401)
T PTZ00424 241 -------------IRQFYVAVE---------------------------------------------------------- 249 (401)
T ss_pred -------------ceEEEEecC----------------------------------------------------------
Confidence 000000000
Q ss_pred HHHHHHHHHHhhhcCcchhhhccccCCccccccCCCCCHHHHHHHHHHHhcCCCCCcEEEEEEehHHHHHHHHHHHhhCC
Q 000384 359 YFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVP 438 (1590)
Q Consensus 359 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~ 438 (1590)
....+...+.+++.. ....++||||+++..++.+++.|..
T Consensus 250 -----------------------------------~~~~~~~~l~~~~~~---~~~~~~ivF~~t~~~~~~l~~~l~~-- 289 (401)
T PTZ00424 250 -----------------------------------KEEWKFDTLCDLYET---LTITQAIIYCNTRRKVDYLTKKMHE-- 289 (401)
T ss_pred -----------------------------------hHHHHHHHHHHHHHh---cCCCeEEEEecCcHHHHHHHHHHHH--
Confidence 000122222233322 1234799999999999999999987
Q ss_pred CCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCceEEEEcccccccccCCCccEEEEccCCCCHHHHHHHhcccccc
Q 000384 439 FLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQH 518 (1590)
Q Consensus 439 ~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fD~p~s~~~yiQr~GRA~R~ 518 (1590)
.++.+..+||+ |+.++|..++++|++|+++|||||+++++|||+|++++||+||.|.+..+|+||+|||||.
T Consensus 290 --~~~~~~~~h~~------~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~ 361 (401)
T PTZ00424 290 --RDFTVSCMHGD------MDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRF 361 (401)
T ss_pred --CCCcEEEEeCC------CCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEEECCCCCHHHEeecccccccC
Confidence 47789999998 8999999999999999999999999999999999999999999999999999999999998
Q ss_pred Cce--EEEEeccc
Q 000384 519 NSQ--FILMLERS 529 (1590)
Q Consensus 519 gs~--~ivlv~~~ 529 (1590)
|.. .++++.+.
T Consensus 362 g~~G~~i~l~~~~ 374 (401)
T PTZ00424 362 GRKGVAINFVTPD 374 (401)
T ss_pred CCCceEEEEEcHH
Confidence 754 55566543
|
|
| >PRK14718 ribonuclease III; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=334.53 Aligned_cols=212 Identities=27% Similarity=0.354 Sum_probs=179.7
Q ss_pred HHHHHHHhcccCCCCCChHHHHHhhcCCCCCCCCCcchhhhhhhhhHhHHHHHHHHhhCCCCCcchhHHHHHHhhchHHH
Q 000384 1028 SQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTL 1107 (1590)
Q Consensus 1028 ~~l~~~l~~~~~~~~~~~~lll~AlT~~s~~~~~n~ErLE~LGDs~Lk~~~s~~l~~~~p~~~eg~ls~~r~~~v~N~~L 1107 (1590)
..|+++|+|.|.| ++||.+||||+|+.. .||||||||||+||+++++.+||.+||+++||.||.+|+.+|||.+|
T Consensus 4 ~~LEkrLGY~Fkn----~~LL~eALTH~Sys~-e~NERLEFLGDAVL~liVse~Lf~~fPdl~EGeLT~LRS~LVSnetL 78 (467)
T PRK14718 4 SQLESRLRYEFRN----AELLRQALTHRSHSA-THNERLEFLGDSVLNCAVAALLFQRFGKLDEGDLSRVRANLVKQQSL 78 (467)
T ss_pred HHHHHHhCCCcCC----HHHHHHHHhccCcCc-ccHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHhhhHHH
Confidence 4578899999988 899999999999865 48999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCccccccccCCCCcccCCCccCCCCCCCCCCCCcccccCCCcccccccceecCCcCCCCccccccchhhhHH
Q 000384 1108 HKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCA 1187 (1590)
Q Consensus 1108 ~~~a~~~gl~~~i~~~~f~~~~w~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~iAD~v 1187 (1590)
+++|+++||..||+... +.
T Consensus 79 A~IAr~LGL~d~Lrlg~---------gE---------------------------------------------------- 97 (467)
T PRK14718 79 YEIAQALNISDGLRLGE---------GE---------------------------------------------------- 97 (467)
T ss_pred HHHHHHcCchHHHhhCC---------cc----------------------------------------------------
Confidence 99999999999998542 00
Q ss_pred HHHHHHhhhccChhHHHHHHHHhCCCccccchhhhhhhhcccccccCCChHHHHHHHHHhCCccCCHHHHHHHHccCCCC
Q 000384 1188 EALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQ 1267 (1590)
Q Consensus 1188 EAliGA~~~~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~lgy~F~~~~LL~~AlTH~S~~ 1267 (1590)
T Consensus 98 -------------------------------------------------------------------------------- 97 (467)
T PRK14718 98 -------------------------------------------------------------------------------- 97 (467)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcchHHHHHHhcccChHHHHHHHHHHHcCCCCCCCCCCCCCCCCCchhhhHHHHHHhceeecCCCChHHHHHHHHhhhc
Q 000384 1268 EFYCYQNLYKHLQHCSTLLLSQITEYVKSFPKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILS 1347 (1590)
Q Consensus 1268 ~~~~ye~L~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~l~D~~Ea~iGAi~lDsg~~~~~~~~~~~~~l~ 1347 (1590)
........+++|+|+|||||||||+|+|+ +.++.|+..++.
T Consensus 98 -------------------------------------~~sgG~~~~sILADvFEALIGAIYLDsG~--e~a~~fI~~ll~ 138 (467)
T PRK14718 98 -------------------------------------LRSGGFRRPSILADAFEAIIGAVFLDGGF--EAAQGVIKRLYV 138 (467)
T ss_pred -------------------------------------cccCCCCChhHHHHHHHHHHHHHHHccCH--HHHHHHHHHHHH
Confidence 00011346788889999999999999887 778888888887
Q ss_pred cccCC---CCCCCChhhHHHHHHHhcCCcceeeee--eeCce--EEEEEEEEEcCeEEEEEEEeCCHHHHHHHHHHHHHH
Q 000384 1348 PIVTP---DKLELPPLRELIELCDSLGYFVKENCT--LKGEM--VHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLK 1420 (1590)
Q Consensus 1348 ~~i~~---~~~~~~P~~~L~e~~~~~~~~~~~~~~--~~g~~--~~~~~~v~~~g~~~~~~g~g~skk~Ak~~AA~~AL~ 1420 (1590)
+.+.. ....+|||+.||||||+++...+.|.. ..|+. +.|++.|+++|..+.+.|.|.|||+|++.||+.||+
T Consensus 139 p~i~~~d~~~~~kDyKS~LQE~~Qk~~~~~PeY~li~esGPdH~k~F~V~V~v~g~~~~G~G~G~SKKeAEQ~AAk~AL~ 218 (467)
T PRK14718 139 PILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLDIKVSGSGASRRAAEQAAAKKALD 218 (467)
T ss_pred HHHhhhcccccccCHHHHHHHHHHhcCCCCCeeEEeeeecCCCCCeEEEEEEECCeeeEEEEEcCCHHHHHHHHHHHHHH
Confidence 76643 234579999999999999988774433 45665 789999999997677999999999999999999999
Q ss_pred Hhhh
Q 000384 1421 KLEV 1424 (1590)
Q Consensus 1421 ~L~~ 1424 (1590)
.|..
T Consensus 219 kL~~ 222 (467)
T PRK14718 219 EVTA 222 (467)
T ss_pred Hhcc
Confidence 9975
|
|
| >PRK12371 ribonuclease III; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-35 Score=322.76 Aligned_cols=212 Identities=24% Similarity=0.267 Sum_probs=171.3
Q ss_pred HHHHHHHhcccCCCCCChHHHHHhhcCCCCCC--CCCcchhhhhhhhhHhHHHHHHHHhhCCCCCcchhHHHHHHhhchH
Q 000384 1028 SQLREEINCHSRNFHIPSSLILEALTTLGCCE--SFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNS 1105 (1590)
Q Consensus 1028 ~~l~~~l~~~~~~~~~~~~lll~AlT~~s~~~--~~n~ErLE~LGDs~Lk~~~s~~l~~~~p~~~eg~ls~~r~~~v~N~ 1105 (1590)
.+|++.|+|.|.| ++++.+||||+|+.. ..||||||||||+||+++++.+||.+||+++||.||.+|+.+|||.
T Consensus 13 ~~le~~lgy~F~~----~~Ll~~AlTH~S~~~~~~~~~eRLEFLGDavL~l~vs~~Lf~~~p~~~eG~Lt~~rs~lV~n~ 88 (235)
T PRK12371 13 SILEERTGHRFAN----KERLERALTHSSARASKQGNYERLEFLGDRVLGLCVAEMLFEAFPDASEGELSVRLNQLVNAE 88 (235)
T ss_pred HHHHHHHCCCCCC----HHHHHHHHcCcCcccCCccchHhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhChH
Confidence 4578889999988 899999999999864 4699999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCccccccccCCCCcccCCCccCCCCCCCCCCCCcccccCCCcccccccceecCCcCCCCccccccchhhh
Q 000384 1106 TLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIAD 1185 (1590)
Q Consensus 1106 ~L~~~a~~~gl~~~i~~~~f~~~~w~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~iAD 1185 (1590)
+|+++|.++||++||+..+ +.. .
T Consensus 89 ~La~ia~~lgL~~~i~~~~---------~~~-----------------------------------~------------- 111 (235)
T PRK12371 89 TCAAIADEIGLHDLIRTGS---------DVK-----------------------------------K------------- 111 (235)
T ss_pred HHHHHHHHCCcHHHhccCc---------chh-----------------------------------h-------------
Confidence 9999999999999998542 000 0
Q ss_pred HHHHHHHHhhhccChhHHHHHHHHhCCCccccchhhhhhhhcccccccCCChHHHHHHHHHhCCccCCHHHHHHHHccCC
Q 000384 1186 CAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHAS 1265 (1590)
Q Consensus 1186 ~vEAliGA~~~~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~lgy~F~~~~LL~~AlTH~S 1265 (1590)
T Consensus 112 -------------------------------------------------------------------------------- 111 (235)
T PRK12371 112 -------------------------------------------------------------------------------- 111 (235)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcchHHHHHHhcccChHHHHHHHHHHHcCCCCCCCCCCCCCCCCCchhhhHHHHHHhceeecCCCChHHHHHHHHhh
Q 000384 1266 VQEFYCYQNLYKHLQHCSTLLLSQITEYVKSFPKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPI 1345 (1590)
Q Consensus 1266 ~~~~~~ye~L~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~l~D~~Ea~iGAi~lDsg~~~~~~~~~~~~~ 1345 (1590)
......+|+++|+|||+|||||+|+|+ +.+++|+..+
T Consensus 112 -----------------------------------------~~~~~~~~ilad~~EAliGAiylD~G~--~~a~~~i~~~ 148 (235)
T PRK12371 112 -----------------------------------------LTGKRLLNVRADVVEALIAAIYLDGGL--EAARPFIQRY 148 (235)
T ss_pred -----------------------------------------cCCcccchHHHHHHHHHHHHHHHcCCH--HHHHHHHHHH
Confidence 000123466677777777777777665 6666776666
Q ss_pred hccccCC-CCCCCChhhHHHHHHHhcCCcce-eee-eeeCce--EEEEEEEEEcCeEEEEEEEeCCHHHHHHHHHHHHHH
Q 000384 1346 LSPIVTP-DKLELPPLRELIELCDSLGYFVK-ENC-TLKGEM--VHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLK 1420 (1590)
Q Consensus 1346 l~~~i~~-~~~~~~P~~~L~e~~~~~~~~~~-~~~-~~~g~~--~~~~~~v~~~g~~~~~~g~g~skk~Ak~~AA~~AL~ 1420 (1590)
+.+.+.. .....|||+.||||||+.+...| +.+ ...|+. +.|+|.|+++|. ..+.|.|.|||+|++.||+.||+
T Consensus 149 ~~~~~~~~~~~~~d~Ks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~~~-~~~~g~G~sKK~Ae~~AA~~al~ 227 (235)
T PRK12371 149 WQKRALETDAARRDAKTELQEWAHAQFGVTPVYRVDSRSGPDHDPRFTVEVEVKGF-APETGEGRSKRAAEQVAAEKMLE 227 (235)
T ss_pred HHHHHhccccccCCHHHHHHHHHHhcCCCCCeEEEEEeecCCCCCeEEEEEEECCE-EEEEeeeCCHHHHHHHHHHHHHH
Confidence 6665543 23456999999999998766555 333 345665 789999999997 68999999999999999999999
Q ss_pred Hhhh
Q 000384 1421 KLEV 1424 (1590)
Q Consensus 1421 ~L~~ 1424 (1590)
.|..
T Consensus 228 ~~~~ 231 (235)
T PRK12371 228 REGV 231 (235)
T ss_pred Hhhh
Confidence 9875
|
|
| >TIGR00603 rad25 DNA repair helicase rad25 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=350.87 Aligned_cols=320 Identities=18% Similarity=0.243 Sum_probs=222.0
Q ss_pred CCCCCCcHHHHHHHHHHhc----CCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhh
Q 000384 41 SINFIPRIYQLKVFEVAKR----RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVH 116 (1590)
Q Consensus 41 ~~~~~pR~yQ~e~le~~~~----~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~ 116 (1590)
...+.+|+||.++++++.+ +++||++|||+|||++++.++..+ ++++|||||+..|+.||.++|.++
T Consensus 251 ~~~~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l---------~k~tLILvps~~Lv~QW~~ef~~~ 321 (732)
T TIGR00603 251 KPTTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTV---------KKSCLVLCTSAVSVEQWKQQFKMW 321 (732)
T ss_pred ccCCCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHh---------CCCEEEEeCcHHHHHHHHHHHHHh
Confidence 3468899999999999873 478999999999999999877654 244999999999999999999998
Q ss_pred cC---CceEEEecCCCCCccchHHHHHhcCCCcEEEEcHHHHHHHHHh--------cCcCccceeEEEEeccccccCCCc
Q 000384 117 TD---FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK--------AFLSLDIVCFIVIDECHHATGNHP 185 (1590)
Q Consensus 117 ~~---~~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~--------~~~~l~~i~lII~DEaH~~~~~~~ 185 (1590)
+. ..+..++|+.... + .....|+|+|++++.....+ ..+.-..|+|||+|||||+... .
T Consensus 322 ~~l~~~~I~~~tg~~k~~------~---~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA~-~ 391 (732)
T TIGR00603 322 STIDDSQICRFTSDAKER------F---HGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPAA-M 391 (732)
T ss_pred cCCCCceEEEEecCcccc------c---ccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccHH-H
Confidence 74 4466666653221 1 12578999999998643221 1233457899999999999653 4
Q ss_pred HHHHHHHHHhcCCCCCcEEEEeccCCccCCCCChhcHHHHHHHHHhhcCCeeEeecchhhh-hhcccCcceeeEeccCCC
Q 000384 186 YTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEM-EVFVPSAKESCRFYDQSK 264 (1590)
Q Consensus 186 ~~~im~~~~~~~~~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~~~~~~~~l-~~~~~~p~~~~~~y~~~~ 264 (1590)
|++++..+ ..+++|||||||.+.++. +..|..+++..+|...-.+.+ ..++.++.-..+...
T Consensus 392 fr~il~~l-----~a~~RLGLTATP~ReD~~---------~~~L~~LiGP~vye~~~~eLi~~G~LA~~~~~ev~v~--- 454 (732)
T TIGR00603 392 FRRVLTIV-----QAHCKLGLTATLVREDDK---------ITDLNFLIGPKLYEANWMELQKKGFIANVQCAEVWCP--- 454 (732)
T ss_pred HHHHHHhc-----CcCcEEEEeecCcccCCc---------hhhhhhhcCCeeeecCHHHHHhCCccccceEEEEEec---
Confidence 66666543 457899999999987642 334566667666655433322 233333221111111
Q ss_pred CcccchhhhHHHhhhhhhhhHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHhHH
Q 000384 265 FCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQ 344 (1590)
Q Consensus 265 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~ 344 (1590)
+.... +...+ ...
T Consensus 455 ----------------------------------~t~~~--~~~yl---------------------------~~~---- 467 (732)
T TIGR00603 455 ----------------------------------MTPEF--YREYL---------------------------REN---- 467 (732)
T ss_pred ----------------------------------CCHHH--HHHHH---------------------------Hhc----
Confidence 00000 00000 000
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHhhhcCcchhhhccccCCccccccCCCCCHHHHHHHHHHHhcCCCCCcEEEEEEehH
Q 000384 345 EECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERI 424 (1590)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r 424 (1590)
.. ... .+.. .-..|+..+..++..+. ..+.++||||+..
T Consensus 468 ----------~~-~k~---~l~~--------------------------~np~K~~~~~~Li~~he-~~g~kiLVF~~~~ 506 (732)
T TIGR00603 468 ----------SR-KRM---LLYV--------------------------MNPNKFRACQFLIRFHE-QRGDKIIVFSDNV 506 (732)
T ss_pred ----------ch-hhh---HHhh--------------------------hChHHHHHHHHHHHHHh-hcCCeEEEEeCCH
Confidence 00 000 0000 00346777666665432 4567999999999
Q ss_pred HHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCC-CceEEEEcccccccccCCCccEEEEccCC-
Q 000384 425 IAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGG-KVNLLFATDVIEEGMHVPNCSYVIRFDLP- 502 (1590)
Q Consensus 425 ~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g-~~~vLVaT~vleeGIDip~~~~VI~fD~p- 502 (1590)
..+..+++.|. +.+++|. ++..+|.+++++|++| .+++||+|+|+.+|||+|++++||+++.|
T Consensus 507 ~~l~~~a~~L~---------~~~I~G~------ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~~s~~~ 571 (732)
T TIGR00603 507 FALKEYAIKLG---------KPFIYGP------TSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQISSHY 571 (732)
T ss_pred HHHHHHHHHcC---------CceEECC------CCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCCEEEEeCCCC
Confidence 88888877662 3468898 8999999999999975 78999999999999999999999999987
Q ss_pred CCHHHHHHHhccccccC
Q 000384 503 KTVSSYIQSRGRARQHN 519 (1590)
Q Consensus 503 ~s~~~yiQr~GRA~R~g 519 (1590)
.|..+|+||+||++|.+
T Consensus 572 gS~~q~iQRlGRilR~~ 588 (732)
T TIGR00603 572 GSRRQEAQRLGRILRAK 588 (732)
T ss_pred CCHHHHHHHhcccccCC
Confidence 59999999999999976
|
All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK12372 ribonuclease III; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=329.40 Aligned_cols=212 Identities=27% Similarity=0.349 Sum_probs=178.0
Q ss_pred HHHHHHHhcccCCCCCChHHHHHhhcCCCCCCCCCcchhhhhhhhhHhHHHHHHHHhhCCCCCcchhHHHHHHhhchHHH
Q 000384 1028 SQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTL 1107 (1590)
Q Consensus 1028 ~~l~~~l~~~~~~~~~~~~lll~AlT~~s~~~~~n~ErLE~LGDs~Lk~~~s~~l~~~~p~~~eg~ls~~r~~~v~N~~L 1107 (1590)
.+|+++|+|.|.| ++||.+||||+|+.. .||||||||||+||+++++.+||.+||+++||.||.+|+.+|||.+|
T Consensus 4 ~~LEk~LGY~Fkn----~~LL~eALTH~Sy~~-~~NERLEFLGDAVL~liVse~Lf~~fP~~~EG~LT~lRS~LVsn~tL 78 (413)
T PRK12372 4 SQLESRLRYEFRN----AELLRQALTHRSHSA-THNERLEFLGDSVLNCAVAALLFQRFGKLDEGDLSRVRANLVKQQSL 78 (413)
T ss_pred HHHHHHhCCCcCC----HHHHHHHHhcccccc-ccHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhHHH
Confidence 3578899999988 899999999999865 48999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCccccccccCCCCcccCCCccCCCCCCCCCCCCcccccCCCcccccccceecCCcCCCCccccccchhhhHH
Q 000384 1108 HKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCA 1187 (1590)
Q Consensus 1108 ~~~a~~~gl~~~i~~~~f~~~~w~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~iAD~v 1187 (1590)
+.+|.++||..||+... +.
T Consensus 79 A~IA~~LgL~~~Lrlg~---------ge---------------------------------------------------- 97 (413)
T PRK12372 79 YEIAQALNISEGLRLGE---------GE---------------------------------------------------- 97 (413)
T ss_pred HHHHHHcCchHhhhcCc---------ch----------------------------------------------------
Confidence 99999999999987531 00
Q ss_pred HHHHHHhhhccChhHHHHHHHHhCCCccccchhhhhhhhcccccccCCChHHHHHHHHHhCCccCCHHHHHHHHccCCCC
Q 000384 1188 EALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQ 1267 (1590)
Q Consensus 1188 EAliGA~~~~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~lgy~F~~~~LL~~AlTH~S~~ 1267 (1590)
T Consensus 98 -------------------------------------------------------------------------------- 97 (413)
T PRK12372 98 -------------------------------------------------------------------------------- 97 (413)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcchHHHHHHhcccChHHHHHHHHHHHcCCCCCCCCCCCCCCCCCchhhhHHHHHHhceeecCCCChHHHHHHHHhhhc
Q 000384 1268 EFYCYQNLYKHLQHCSTLLLSQITEYVKSFPKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILS 1347 (1590)
Q Consensus 1268 ~~~~ye~L~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~l~D~~Ea~iGAi~lDsg~~~~~~~~~~~~~l~ 1347 (1590)
........+++|+|+|||+|||||+|+|+ +.++.|+..++.
T Consensus 98 -------------------------------------~~sgg~~~~kILADvfEALIGAIYLDsG~--e~a~~fV~~ll~ 138 (413)
T PRK12372 98 -------------------------------------LRSGGFRRPSILADAFEAIIGAVFLDGGF--EAAQGVIKRLYV 138 (413)
T ss_pred -------------------------------------hhcCCCCCccHHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHH
Confidence 00011346788888888888888888887 677888877777
Q ss_pred cccCC---CCCCCChhhHHHHHHHhcCCcceeee--eeeCce--EEEEEEEEEcCeEEEEEEEeCCHHHHHHHHHHHHHH
Q 000384 1348 PIVTP---DKLELPPLRELIELCDSLGYFVKENC--TLKGEM--VHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLK 1420 (1590)
Q Consensus 1348 ~~i~~---~~~~~~P~~~L~e~~~~~~~~~~~~~--~~~g~~--~~~~~~v~~~g~~~~~~g~g~skk~Ak~~AA~~AL~ 1420 (1590)
++++. ....+|||+.||||||+++...+.|. ...|+. ..|+|.|+++|..+.+.|.|.|||+|++.||+.||+
T Consensus 139 p~l~~~~~~~~~~D~KS~LQE~~Q~~~~~~P~Y~lv~e~Gp~h~~~F~V~V~v~g~~~~g~G~G~SKKeAEQ~AAr~AL~ 218 (413)
T PRK12372 139 PILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLDVKVSGSGASRRAAEQAAAKKALD 218 (413)
T ss_pred HHHhhcccccccCCHHHHHHHHHHhcCCCCCeeEEeeeecCCCCceEEEEEEECCeEEEEEEEeCCHHHHHHHHHHHHHH
Confidence 76643 23457999999999999998877443 345654 789999999997677899999999999999999999
Q ss_pred Hhhh
Q 000384 1421 KLEV 1424 (1590)
Q Consensus 1421 ~L~~ 1424 (1590)
+|..
T Consensus 219 kL~~ 222 (413)
T PRK12372 219 EVMA 222 (413)
T ss_pred HHhc
Confidence 9985
|
|
| >KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-34 Score=322.12 Aligned_cols=331 Identities=24% Similarity=0.307 Sum_probs=250.0
Q ss_pred CCCCCcHHHHHHHHHHh-cCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHh---hc
Q 000384 42 INFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRV---HT 117 (1590)
Q Consensus 42 ~~~~pR~yQ~e~le~~~-~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~---~~ 117 (1590)
.-..|.|.|...++-++ +++++.++.||||||.+++++|.+.+.....+-+.-+|||||||++|+.|.+.++++ ++
T Consensus 200 Gy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV~~qlaqFt 279 (691)
T KOG0338|consen 200 GYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELAIQVHSVTKQLAQFT 279 (691)
T ss_pred CCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHHHHHHHHHHHHHhhc
Confidence 45679999999999775 899999999999999999999988665443344556899999999999999888776 57
Q ss_pred CCceEEEecCCCCCccchHHHHHhcCCCcEEEEcHHHHHHHHHhc-CcCccceeEEEEeccccccCCCcHHHHHHHHHhc
Q 000384 118 DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA-FLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHK 196 (1590)
Q Consensus 118 ~~~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~~-~~~l~~i~lII~DEaH~~~~~~~~~~im~~~~~~ 196 (1590)
++.++...|+.++.. +-..+...++|+|+||+.|.+.+++. .+.++++.++|+|||+++... .|..-|+++...
T Consensus 280 ~I~~~L~vGGL~lk~----QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRMLee-gFademnEii~l 354 (691)
T KOG0338|consen 280 DITVGLAVGGLDLKA----QEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRMLEE-GFADEMNEIIRL 354 (691)
T ss_pred cceeeeeecCccHHH----HHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHHHHHH-HHHHHHHHHHHh
Confidence 899999999987654 22344568999999999999999765 578899999999999999875 788889998888
Q ss_pred CCCCCcEEEEeccCCccCCCCChhcHHHHHHHHHhhcCCeeEeecchhhhhhcccCcceeeEeccCCCCcccchhhhHHH
Q 000384 197 SDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEV 276 (1590)
Q Consensus 197 ~~~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~~~~~~~~l~~~~~~p~~~~~~y~~~~~~~~~l~~~~~~ 276 (1590)
.+...+-+++|||.. ..+.+|-++ .+.+|.. ++.++..-..
T Consensus 355 cpk~RQTmLFSATMt------------eeVkdL~sl----------------SL~kPvr--ifvd~~~~~a--------- 395 (691)
T KOG0338|consen 355 CPKNRQTMLFSATMT------------EEVKDLASL----------------SLNKPVR--IFVDPNKDTA--------- 395 (691)
T ss_pred ccccccceeehhhhH------------HHHHHHHHh----------------hcCCCeE--EEeCCccccc---------
Confidence 888888999999953 234444332 1222321 1111111000
Q ss_pred hhhhhhhhHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHhHHHHHHHHhhhhHH
Q 000384 277 SWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQ 356 (1590)
Q Consensus 277 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (1590)
..|
T Consensus 396 -------------------------------~~L---------------------------------------------- 398 (691)
T KOG0338|consen 396 -------------------------------PKL---------------------------------------------- 398 (691)
T ss_pred -------------------------------hhh----------------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHhhhcCcchhhhccccCCccccccCCCCCHHHHHHHHHHH-hcCCCCCcEEEEEEehHHHHHHHHHHHh
Q 000384 357 CKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFL-SFGKSTQVLCIIFVERIIAAKVVERFVK 435 (1590)
Q Consensus 357 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~-~~~~~~~~k~IIFv~~r~ta~~L~~~L~ 435 (1590)
-++|+ .+.. +.-..+-..|..++. .| ..++||||.++..|..|.-+|-
T Consensus 399 tQEFi-----RIR~----------------------~re~dRea~l~~l~~rtf----~~~~ivFv~tKk~AHRl~IllG 447 (691)
T KOG0338|consen 399 TQEFI-----RIRP----------------------KREGDREAMLASLITRTF----QDRTIVFVRTKKQAHRLRILLG 447 (691)
T ss_pred hHHHh-----eecc----------------------ccccccHHHHHHHHHHhc----ccceEEEEehHHHHHHHHHHHH
Confidence 00111 0000 000112223333333 23 2479999999999999987775
Q ss_pred hCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCceEEEEcccccccccCCCccEEEEccCCCCHHHHHHHhccc
Q 000384 436 KVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRA 515 (1590)
Q Consensus 436 ~~~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fD~p~s~~~yiQr~GRA 515 (1590)
- -+++++-+||+ +++.+|.+.+++|+++++++||||+|+.+||||+.+..||+|++|.+...|+||+||+
T Consensus 448 L----lgl~agElHGs------LtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRT 517 (691)
T KOG0338|consen 448 L----LGLKAGELHGS------LTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRT 517 (691)
T ss_pred H----hhchhhhhccc------ccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEeccCchhHHHHHHHhhhh
Confidence 4 58899999999 9999999999999999999999999999999999999999999999999999999998
Q ss_pred cccCc--eEEEEeccchHHhh
Q 000384 516 RQHNS--QFILMLERSERSVT 534 (1590)
Q Consensus 516 ~R~gs--~~ivlv~~~E~~~~ 534 (1590)
.|+|. ..|.++.+.|+.+-
T Consensus 518 ARAGRaGrsVtlvgE~dRkll 538 (691)
T KOG0338|consen 518 ARAGRAGRSVTLVGESDRKLL 538 (691)
T ss_pred hhcccCcceEEEeccccHHHH
Confidence 88775 47778877666543
|
|
| >COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=343.60 Aligned_cols=325 Identities=23% Similarity=0.282 Sum_probs=247.3
Q ss_pred CCCCCCcHHHHHHHHHHh-cCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeE-EEEEecChhhHHHHHHHHHhh--
Q 000384 41 SINFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKL-IIFLAPTVHLVHQQYDVIRVH-- 116 (1590)
Q Consensus 41 ~~~~~pR~yQ~e~le~~~-~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~-vl~LvPt~~Lv~Qq~~~i~~~-- 116 (1590)
.....|.++|..+++.++ ++|+|+.+.||||||+++.+++.+.+... ...... +|||+||++|+.|.+++++.+
T Consensus 47 ~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~--~~~~~~~aLil~PTRELA~Qi~~~~~~~~~ 124 (513)
T COG0513 47 LGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKS--VERKYVSALILAPTRELAVQIAEELRKLGK 124 (513)
T ss_pred cCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcc--cccCCCceEEECCCHHHHHHHHHHHHHHHh
Confidence 456789999999999998 59999999999999999999888765421 111112 899999999999999998875
Q ss_pred -c-CCceEEEecCCCCCccchHHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCCCcHHHHHHHHH
Q 000384 117 -T-DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFY 194 (1590)
Q Consensus 117 -~-~~~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~~~~~~im~~~~ 194 (1590)
. ++++..++|+.+..... ...-.+++|+|+||++|++++.++.+.+.++.++|+|||+++.+- .|...+....
T Consensus 125 ~~~~~~~~~i~GG~~~~~q~----~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADrmLd~-Gf~~~i~~I~ 199 (513)
T COG0513 125 NLGGLRVAVVYGGVSIRKQI----EALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRMLDM-GFIDDIEKIL 199 (513)
T ss_pred hcCCccEEEEECCCCHHHHH----HHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhhhhcC-CCHHHHHHHH
Confidence 4 57899999997655321 222236999999999999999999999999999999999999987 6666666666
Q ss_pred hcCCCCCcEEEEeccCCccCCCCChhcHHHHHHHHHhhcCCeeEeecchhhhhhcccCcceeeEeccCCCCcccchhhhH
Q 000384 195 HKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKL 274 (1590)
Q Consensus 195 ~~~~~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~~~~~~~~l~~~~~~p~~~~~~y~~~~~~~~~l~~~~ 274 (1590)
...+...+.+.+|||.-. .+..|...+ ...|....+.- .....
T Consensus 200 ~~~p~~~qtllfSAT~~~------------~i~~l~~~~----------------l~~p~~i~v~~-~~~~~-------- 242 (513)
T COG0513 200 KALPPDRQTLLFSATMPD------------DIRELARRY----------------LNDPVEIEVSV-EKLER-------- 242 (513)
T ss_pred HhCCcccEEEEEecCCCH------------HHHHHHHHH----------------ccCCcEEEEcc-ccccc--------
Confidence 666667889999999642 133332211 11222111100 00000
Q ss_pred HHhhhhhhhhHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHhHHHHHHHHhhhh
Q 000384 275 EVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSS 354 (1590)
Q Consensus 275 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (1590)
T Consensus 243 -------------------------------------------------------------------------------- 242 (513)
T COG0513 243 -------------------------------------------------------------------------------- 242 (513)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHhhhcCcchhhhccccCCccccccCCCCCHHHHHHHHHHHhcCCCCCcEEEEEEehHHHHHHHHHHH
Q 000384 355 LQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFV 434 (1590)
Q Consensus 355 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L 434 (1590)
....+.+.. .. ......|+..|..++.... ..++||||+++..++.|+..|
T Consensus 243 ---------~~~~i~q~~-------~~----------v~~~~~k~~~L~~ll~~~~---~~~~IVF~~tk~~~~~l~~~l 293 (513)
T COG0513 243 ---------TLKKIKQFY-------LE----------VESEEEKLELLLKLLKDED---EGRVIVFVRTKRLVEELAESL 293 (513)
T ss_pred ---------cccCceEEE-------EE----------eCCHHHHHHHHHHHHhcCC---CCeEEEEeCcHHHHHHHHHHH
Confidence 000000000 00 0000147888888887644 237999999999999999999
Q ss_pred hhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCceEEEEcccccccccCCCccEEEEccCCCCHHHHHHHhcc
Q 000384 435 KKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514 (1590)
Q Consensus 435 ~~~~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fD~p~s~~~yiQr~GR 514 (1590)
.. .++++..+||+ |++++|.+++++|++|+++|||||+|+.+|||||++++||+||.|.+...|+||+||
T Consensus 294 ~~----~g~~~~~lhG~------l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGR 363 (513)
T COG0513 294 RK----RGFKVAALHGD------LPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGR 363 (513)
T ss_pred HH----CCCeEEEecCC------CCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEEccCCCCHHHheeccCc
Confidence 98 57999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCce--EEEEecc
Q 000384 515 ARQHNSQ--FILMLER 528 (1590)
Q Consensus 515 A~R~gs~--~ivlv~~ 528 (1590)
+||.|.. .+.++.+
T Consensus 364 TgRaG~~G~ai~fv~~ 379 (513)
T COG0513 364 TGRAGRKGVAISFVTE 379 (513)
T ss_pred cccCCCCCeEEEEeCc
Confidence 9999875 6666654
|
|
| >TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-32 Score=339.66 Aligned_cols=315 Identities=17% Similarity=0.254 Sum_probs=219.1
Q ss_pred CCCCcHHHHHHHHHHh-cCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhhcCCce
Q 000384 43 NFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEV 121 (1590)
Q Consensus 43 ~~~pR~yQ~e~le~~~-~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~~~~v 121 (1590)
.-.+||+|.++++.++ ++|+++++|||+|||+++++++.. ..+.++||+|+++|+.||.+.++. .++.+
T Consensus 9 ~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~---------~~~~~lVi~P~~~L~~dq~~~l~~-~gi~~ 78 (470)
T TIGR00614 9 LSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALC---------SDGITLVISPLISLMEDQVLQLKA-SGIPA 78 (470)
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHH---------cCCcEEEEecHHHHHHHHHHHHHH-cCCcE
Confidence 3468999999999987 589999999999999999887653 134589999999999999999985 48888
Q ss_pred EEEecCCCCCccchHHHHHh-cCCCcEEEEcHHHHHHHH-HhcCc-CccceeEEEEeccccccCC-CcHHHHHHHH--Hh
Q 000384 122 EEYYGAKGVDEWDSQCWQKE-INKNDVLVMTPQILLDAL-RKAFL-SLDIVCFIVIDECHHATGN-HPYTKIMKEF--YH 195 (1590)
Q Consensus 122 ~~~~G~~~~d~~~~~~w~~~-~~~~~VlV~T~q~L~~~l-~~~~~-~l~~i~lII~DEaH~~~~~-~~~~~im~~~--~~ 195 (1590)
..+.|+...+. ....+... ....+|+++||+.+.... ....+ ...++++|||||||++..+ |.++.....+ +.
T Consensus 79 ~~l~~~~~~~~-~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l~ 157 (470)
T TIGR00614 79 TFLNSSQSKEQ-QKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGSLK 157 (470)
T ss_pred EEEeCCCCHHH-HHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHHHH
Confidence 88887654332 11223322 245899999999975422 11112 4678999999999999865 4444443322 12
Q ss_pred cCCCCCcEEEEeccCCccCCCCChhcHHHHHHHHHhhcCCeeEeecchhhhhhcccCcceeeEeccCCCCcccchhhhHH
Q 000384 196 KSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLE 275 (1590)
Q Consensus 196 ~~~~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~~~~~~~~l~~~~~~p~~~~~~y~~~~~~~~~l~~~~~ 275 (1590)
...+..++++||||+.... ...+...++. ..|......+.....
T Consensus 158 ~~~~~~~~l~lTAT~~~~~-----------~~di~~~l~l---------------~~~~~~~~s~~r~nl---------- 201 (470)
T TIGR00614 158 QKFPNVPIMALTATASPSV-----------REDILRQLNL---------------KNPQIFCTSFDRPNL---------- 201 (470)
T ss_pred HHcCCCceEEEecCCCHHH-----------HHHHHHHcCC---------------CCCcEEeCCCCCCCc----------
Confidence 2234567999999986321 1222222211 001000000000000
Q ss_pred HhhhhhhhhHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHhHHHHHHHHhhhhH
Q 000384 276 VSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSL 355 (1590)
Q Consensus 276 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (1590)
.|. +.
T Consensus 202 -------------------~~~-v~------------------------------------------------------- 206 (470)
T TIGR00614 202 -------------------YYE-VR------------------------------------------------------- 206 (470)
T ss_pred -------------------EEE-EE-------------------------------------------------------
Confidence 000 00
Q ss_pred HHHHHHHHHHHHHhhhcCcchhhhccccCCccccccCCCCCHHHHHHHHHHHhcCCCCCcEEEEEEehHHHHHHHHHHHh
Q 000384 356 QCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVK 435 (1590)
Q Consensus 356 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~ 435 (1590)
......+..+.+.+... ..+.++||||+++..++.++..|.
T Consensus 207 -------------------------------------~~~~~~~~~l~~~l~~~--~~~~~~IIF~~s~~~~e~la~~L~ 247 (470)
T TIGR00614 207 -------------------------------------RKTPKILEDLLRFIRKE--FKGKSGIIYCPSRKKSEQVTASLQ 247 (470)
T ss_pred -------------------------------------eCCccHHHHHHHHHHHh--cCCCceEEEECcHHHHHHHHHHHH
Confidence 00001222333333321 234568999999999999999998
Q ss_pred hCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCceEEEEcccccccccCCCccEEEEccCCCCHHHHHHHhccc
Q 000384 436 KVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRA 515 (1590)
Q Consensus 436 ~~~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fD~p~s~~~yiQr~GRA 515 (1590)
. .++.+..+||+ |+.++|.+++++|++|+++|||||+++++|||+|++++||+||+|.+...|+||+|||
T Consensus 248 ~----~g~~~~~~H~~------l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRa 317 (470)
T TIGR00614 248 N----LGIAAGAYHAG------LEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRA 317 (470)
T ss_pred h----cCCCeeEeeCC------CCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCCCHHHHHhhhcCc
Confidence 7 57889999998 9999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCce--EEEEecc
Q 000384 516 RQHNSQ--FILMLER 528 (1590)
Q Consensus 516 ~R~gs~--~ivlv~~ 528 (1590)
||.|.. .+++...
T Consensus 318 GR~G~~~~~~~~~~~ 332 (470)
T TIGR00614 318 GRDGLPSECHLFYAP 332 (470)
T ss_pred CCCCCCceEEEEech
Confidence 998854 5555444
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-32 Score=350.60 Aligned_cols=327 Identities=18% Similarity=0.243 Sum_probs=222.1
Q ss_pred CCCCcHHHHHHHHHHh-cCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhhc--CC
Q 000384 43 NFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT--DF 119 (1590)
Q Consensus 43 ~~~pR~yQ~e~le~~~-~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~--~~ 119 (1590)
...|+++|.++++.++ ++|+|+.+|||||||+++.+++.+.+. ..++.++|||+||++|+.||.++++.+. ++
T Consensus 34 ~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~----~~~~~~aL~l~PtraLa~q~~~~l~~l~~~~i 109 (742)
T TIGR03817 34 IHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALA----DDPRATALYLAPTKALAADQLRAVRELTLRGV 109 (742)
T ss_pred CCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHh----hCCCcEEEEEcChHHHHHHHHHHHHHhccCCe
Confidence 4479999999999998 599999999999999999998877664 2345679999999999999999999874 67
Q ss_pred ceEEEecCCCCCccchHHHHHhcCCCcEEEEcHHHHHHHHHh----cCcCccceeEEEEeccccccCCC--cHHHHHHHH
Q 000384 120 EVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK----AFLSLDIVCFIVIDECHHATGNH--PYTKIMKEF 193 (1590)
Q Consensus 120 ~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~----~~~~l~~i~lII~DEaH~~~~~~--~~~~im~~~ 193 (1590)
++..+.|+...+. . .....+++|+|+||++|...+-. ....++++++||+||||.+.+.. ....++...
T Consensus 110 ~v~~~~Gdt~~~~---r--~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g~fg~~~~~il~rL 184 (742)
T TIGR03817 110 RPATYDGDTPTEE---R--RWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRGVFGSHVALVLRRL 184 (742)
T ss_pred EEEEEeCCCCHHH---H--HHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccCccHHHHHHHHHHH
Confidence 8888888765321 1 22335689999999998653311 11226889999999999987531 123333332
Q ss_pred H---hcCCCCCcEEEEeccCCccCCCCChhcHHHHHHHHHhhcCCeeEeecchhhhhhcccCcceeeEeccCCCCcccch
Q 000384 194 Y---HKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDL 270 (1590)
Q Consensus 194 ~---~~~~~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~~~~~~~~l~~~~~~p~~~~~~y~~~~~~~~~l 270 (1590)
. ......|+++++|||..+. . ...+..++..+..+... ..+........+.+....
T Consensus 185 ~ri~~~~g~~~q~i~~SATi~n~---------~---~~~~~l~g~~~~~i~~~-----~~~~~~~~~~~~~p~~~~---- 243 (742)
T TIGR03817 185 RRLCARYGASPVFVLASATTADP---------A---AAASRLIGAPVVAVTED-----GSPRGARTVALWEPPLTE---- 243 (742)
T ss_pred HHHHHhcCCCCEEEEEecCCCCH---------H---HHHHHHcCCCeEEECCC-----CCCcCceEEEEecCCccc----
Confidence 1 2234578999999996532 1 11223333222111100 001111111111110000
Q ss_pred hhhHHHhhhhhhhhHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHhHHHHHHHH
Q 000384 271 KGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIY 350 (1590)
Q Consensus 271 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~ 350 (1590)
... ..+
T Consensus 244 ----------------------------~~~---------------------~~~------------------------- 249 (742)
T TIGR03817 244 ----------------------------LTG---------------------ENG------------------------- 249 (742)
T ss_pred ----------------------------ccc---------------------ccc-------------------------
Confidence 000 000
Q ss_pred hhhhHHHHHHHHHHHHHHhhhcCcchhhhccccCCccccccCCCCCHHHHHHHHHHHhcCCCCCcEEEEEEehHHHHHHH
Q 000384 351 RQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVV 430 (1590)
Q Consensus 351 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~ta~~L 430 (1590)
. .........+...|.+++.. +.++||||++|..++.|
T Consensus 250 ---------------------~----------------~~r~~~~~~~~~~l~~l~~~-----~~~~IVF~~sr~~ae~l 287 (742)
T TIGR03817 250 ---------------------A----------------PVRRSASAEAADLLADLVAE-----GARTLTFVRSRRGAELV 287 (742)
T ss_pred ---------------------c----------------ccccchHHHHHHHHHHHHHC-----CCCEEEEcCCHHHHHHH
Confidence 0 00000001233444444432 45899999999999999
Q ss_pred HHHHhhCC----CCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCceEEEEcccccccccCCCccEEEEccCCCCHH
Q 000384 431 ERFVKKVP----FLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVS 506 (1590)
Q Consensus 431 ~~~L~~~~----~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fD~p~s~~ 506 (1590)
+..+.... ...+.++..+||+ +++++|.+++++|++|++++||||+++++|||||++++||+||.|.+..
T Consensus 288 ~~~l~~~l~~~~~~l~~~v~~~hgg------~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~ 361 (742)
T TIGR03817 288 AAIARRLLGEVDPDLAERVAAYRAG------YLPEDRRELERALRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRA 361 (742)
T ss_pred HHHHHHHHHhhccccccchhheecC------CCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccEEEEeCCCCCHH
Confidence 98876521 0113567788887 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccccccCce
Q 000384 507 SYIQSRGRARQHNSQ 521 (1590)
Q Consensus 507 ~yiQr~GRA~R~gs~ 521 (1590)
+|+||+|||||.|..
T Consensus 362 ~y~qRiGRaGR~G~~ 376 (742)
T TIGR03817 362 SLWQQAGRAGRRGQG 376 (742)
T ss_pred HHHHhccccCCCCCC
Confidence 999999999998864
|
A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA. |
| >KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=308.72 Aligned_cols=333 Identities=21% Similarity=0.294 Sum_probs=244.9
Q ss_pred CCCCcHHHHHHHHHHh-cCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCC--eEEEEEecChhhHHHHHHHHHhh---
Q 000384 43 NFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFK--KLIIFLAPTVHLVHQQYDVIRVH--- 116 (1590)
Q Consensus 43 ~~~pR~yQ~e~le~~~-~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~--~~vl~LvPt~~Lv~Qq~~~i~~~--- 116 (1590)
--...|.|...++..+ ++++++-++||||||+++++++.+++.......+. --+|||+||++|+.|..+++..+
T Consensus 26 F~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~~~F~~~ 105 (567)
T KOG0345|consen 26 FEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREVAQPFLEH 105 (567)
T ss_pred CcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHHHHHHHHHh
Confidence 4457899999999887 59999999999999999999999988544433333 36899999999999999988765
Q ss_pred -cCCceEEEecCCCCCccchHHHHHhcCCCcEEEEcHHHHHHHHHhc--CcCccceeEEEEeccccccCCCcHHHHHHHH
Q 000384 117 -TDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA--FLSLDIVCFIVIDECHHATGNHPYTKIMKEF 193 (1590)
Q Consensus 117 -~~~~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~~--~~~l~~i~lII~DEaH~~~~~~~~~~im~~~ 193 (1590)
.++++..+.|+.+++. +...+. -.+++|+|+||+.|.+++++. .+.+..+.++|+|||+++.+- .|..-+..+
T Consensus 106 l~~l~~~l~vGG~~v~~-Di~~fk--ee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrLldm-gFe~~~n~I 181 (567)
T KOG0345|consen 106 LPNLNCELLVGGRSVEE-DIKTFK--EEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRLLDM-GFEASVNTI 181 (567)
T ss_pred hhccceEEEecCccHHH-HHHHHH--HhCCcEEEeCchhHHHHHhchhhhccccccceEEecchHhHhcc-cHHHHHHHH
Confidence 4688999999977764 222222 257899999999999999884 445669999999999999875 566666666
Q ss_pred HhcCCCCCcEEEEeccCCccCCCCChhcHHHHHHHHHhhcCCeeEeecchhhhhhcccCcceeeEeccCCCCcccchhhh
Q 000384 194 YHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGK 273 (1590)
Q Consensus 194 ~~~~~~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~~~~~~~~l~~~~~~p~~~~~~y~~~~~~~~~l~~~ 273 (1590)
+...+.+.|.=++|||-... ..+|-. ..+..|....+.-......
T Consensus 182 Ls~LPKQRRTGLFSATq~~~------------v~dL~r----------------aGLRNpv~V~V~~k~~~~t------- 226 (567)
T KOG0345|consen 182 LSFLPKQRRTGLFSATQTQE------------VEDLAR----------------AGLRNPVRVSVKEKSKSAT------- 226 (567)
T ss_pred HHhcccccccccccchhhHH------------HHHHHH----------------hhccCceeeeecccccccC-------
Confidence 66677777777789984321 112211 0111111111100000000
Q ss_pred HHHhhhhhhhhHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHhHHHHHHHHhhh
Q 000384 274 LEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQS 353 (1590)
Q Consensus 274 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 353 (1590)
.+.+...|.
T Consensus 227 ---------------PS~L~~~Y~-------------------------------------------------------- 235 (567)
T KOG0345|consen 227 ---------------PSSLALEYL-------------------------------------------------------- 235 (567)
T ss_pred ---------------chhhcceee--------------------------------------------------------
Confidence 000000000
Q ss_pred hHHHHHHHHHHHHHHhhhcCcchhhhccccCCccccccCCCCCHHHHHHHHHHHhcCCCCCcEEEEEEehHHHHHHHHHH
Q 000384 354 SLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERF 433 (1590)
Q Consensus 354 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~ 433 (1590)
+ -....|+..|+++|... ...+||||..+-..+++...+
T Consensus 236 -------------------------v-------------~~a~eK~~~lv~~L~~~---~~kK~iVFF~TCasVeYf~~~ 274 (567)
T KOG0345|consen 236 -------------------------V-------------CEADEKLSQLVHLLNNN---KDKKCIVFFPTCASVEYFGKL 274 (567)
T ss_pred -------------------------E-------------ecHHHHHHHHHHHHhcc---ccccEEEEecCcchHHHHHHH
Confidence 0 00145888888888763 456999999999999999999
Q ss_pred HhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCceEEEEcccccccccCCCccEEEEccCCCCHHHHHHHhc
Q 000384 434 VKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRG 513 (1590)
Q Consensus 434 L~~~~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fD~p~s~~~yiQr~G 513 (1590)
+..+ +....+..+||. |.++.|..+++.|++..-.+|+||+|+.+|||||++++||+||+|.++.+|+||.|
T Consensus 275 ~~~~--l~~~~i~~iHGK------~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~G 346 (567)
T KOG0345|consen 275 FSRL--LKKREIFSIHGK------MSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCG 346 (567)
T ss_pred HHHH--hCCCcEEEecch------hcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcc
Confidence 9885 356788899999 99999999999999988889999999999999999999999999999999999999
Q ss_pred cccccCce--EEEEeccc-hHHhh
Q 000384 514 RARQHNSQ--FILMLERS-ERSVT 534 (1590)
Q Consensus 514 RA~R~gs~--~ivlv~~~-E~~~~ 534 (1590)
|++|.|.. .++++.+. |.+..
T Consensus 347 RTaR~gr~G~Aivfl~p~E~aYve 370 (567)
T KOG0345|consen 347 RTARAGREGNAIVFLNPREEAYVE 370 (567)
T ss_pred hhhhccCccceEEEecccHHHHHH
Confidence 99998864 56666544 44433
|
|
| >KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=298.58 Aligned_cols=318 Identities=20% Similarity=0.248 Sum_probs=239.6
Q ss_pred CCCCCcHHHHHHHHHHh-cCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhh---c
Q 000384 42 INFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVH---T 117 (1590)
Q Consensus 42 ~~~~pR~yQ~e~le~~~-~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~---~ 117 (1590)
...+|.|.|...+++++ ++|+|-++-||||||.++.++|.+.+. ....+--++|+.||++|+.|.++.|... .
T Consensus 26 ~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLs---edP~giFalvlTPTrELA~QiaEQF~alGk~l 102 (442)
T KOG0340|consen 26 GIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLS---EDPYGIFALVLTPTRELALQIAEQFIALGKLL 102 (442)
T ss_pred cCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhc---cCCCcceEEEecchHHHHHHHHHHHHHhcccc
Confidence 46789999999999998 599999999999999999999887664 3334556899999999999999988764 5
Q ss_pred CCceEEEecCCCCCccchHHHHHhcCCCcEEEEcHHHHHHHHHhc----CcCccceeEEEEeccccccCCCcHHHHHHHH
Q 000384 118 DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA----FLSLDIVCFIVIDECHHATGNHPYTKIMKEF 193 (1590)
Q Consensus 118 ~~~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~~----~~~l~~i~lII~DEaH~~~~~~~~~~im~~~ 193 (1590)
++++.+++|++..-. .-..+..+.+|+|+||+.+.+.+... .+.+.++.++|+|||+++... .|..++...
T Consensus 103 ~lK~~vivGG~d~i~----qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrvL~~-~f~d~L~~i 177 (442)
T KOG0340|consen 103 NLKVSVIVGGTDMIM----QAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRVLAG-CFPDILEGI 177 (442)
T ss_pred cceEEEEEccHHHhh----hhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchhhhhcc-chhhHHhhh
Confidence 799999999875332 12344568999999999999888754 345788999999999999765 788888877
Q ss_pred HhcCCCCCcEEEEeccCCccCCCCChhcHHHHHHHHHhhcCCeeEeecchhhhhhcccCcceeeEeccCCCCcccchhhh
Q 000384 194 YHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGK 273 (1590)
Q Consensus 194 ~~~~~~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~~~~~~~~l~~~~~~p~~~~~~y~~~~~~~~~l~~~ 273 (1590)
....+...+-+.+|||...+ +..+.. .. ...+ ....+..... ....+.
T Consensus 178 ~e~lP~~RQtLlfSATitd~------------i~ql~~---~~-------------i~k~--~a~~~e~~~~--vstvet 225 (442)
T KOG0340|consen 178 EECLPKPRQTLLFSATITDT------------IKQLFG---CP-------------ITKS--IAFELEVIDG--VSTVET 225 (442)
T ss_pred hccCCCccceEEEEeehhhH------------HHHhhc---CC-------------cccc--cceEEeccCC--CCchhh
Confidence 66666656789999995422 222211 00 0000 0111111000 000000
Q ss_pred HHHhhhhhhhhHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHhHHHHHHHHhhh
Q 000384 274 LEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQS 353 (1590)
Q Consensus 274 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 353 (1590)
+.
T Consensus 226 L~------------------------------------------------------------------------------ 227 (442)
T KOG0340|consen 226 LY------------------------------------------------------------------------------ 227 (442)
T ss_pred hh------------------------------------------------------------------------------
Confidence 00
Q ss_pred hHHHHHHHHHHHHHHhhhcCcchhhhccccCCccccccCCCCCHHHHHHHHHHHhcCCCCCcEEEEEEehHHHHHHHHHH
Q 000384 354 SLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERF 433 (1590)
Q Consensus 354 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~ 433 (1590)
+.|+ .-....|-..|..+|..|....+..++|||++..++..|+..
T Consensus 228 ----q~yI------------------------------~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~ 273 (442)
T KOG0340|consen 228 ----QGYI------------------------------LVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMT 273 (442)
T ss_pred ----hhee------------------------------ecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHH
Confidence 0000 000123445677777777655667899999999999999999
Q ss_pred HhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCceEEEEcccccccccCCCccEEEEccCCCCHHHHHHHhc
Q 000384 434 VKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRG 513 (1590)
Q Consensus 434 L~~~~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fD~p~s~~~yiQr~G 513 (1590)
|+.+ .+++..+||. |++++|...+.+||++..++||||+|+++|+|||.+++||+||.|.++..||||+|
T Consensus 274 l~~l----e~r~~~lHs~------m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvG 343 (442)
T KOG0340|consen 274 LKNL----EVRVVSLHSQ------MPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVG 343 (442)
T ss_pred Hhhh----ceeeeehhhc------chHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhc
Confidence 9884 6889999998 99999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCce
Q 000384 514 RARQHNSQ 521 (1590)
Q Consensus 514 RA~R~gs~ 521 (1590)
|..|+|..
T Consensus 344 RtARAGR~ 351 (442)
T KOG0340|consen 344 RTARAGRK 351 (442)
T ss_pred chhcccCC
Confidence 97666643
|
|
| >PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-32 Score=343.69 Aligned_cols=314 Identities=18% Similarity=0.254 Sum_probs=216.4
Q ss_pred CCCCcHHHHHHHHHHh-cCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhhcCCce
Q 000384 43 NFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEV 121 (1590)
Q Consensus 43 ~~~pR~yQ~e~le~~~-~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~~~~v 121 (1590)
.-.+|++|.++++.++ ++|+|+.+|||+|||+++++++... .+.+|||+|+++|+.+|...+.. .++++
T Consensus 458 ~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~---------~GiTLVISPLiSLmqDQV~~L~~-~GI~A 527 (1195)
T PLN03137 458 NHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC---------PGITLVISPLVSLIQDQIMNLLQ-ANIPA 527 (1195)
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc---------CCcEEEEeCHHHHHHHHHHHHHh-CCCeE
Confidence 4578999999999988 5999999999999999999987532 24699999999999988777765 48888
Q ss_pred EEEecCCCCCccchHHHHHh---cCCCcEEEEcHHHHHH--HHHhcC---cCccceeEEEEeccccccCC-CcHHHHHHH
Q 000384 122 EEYYGAKGVDEWDSQCWQKE---INKNDVLVMTPQILLD--ALRKAF---LSLDIVCFIVIDECHHATGN-HPYTKIMKE 192 (1590)
Q Consensus 122 ~~~~G~~~~d~~~~~~w~~~---~~~~~VlV~T~q~L~~--~l~~~~---~~l~~i~lII~DEaH~~~~~-~~~~~im~~ 192 (1590)
..+.|+...... ...+... ....+|+++||++|.. .+.+.. .....+.+|||||||++..+ |.|+..++.
T Consensus 528 a~L~s~~s~~eq-~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~ 606 (1195)
T PLN03137 528 ASLSAGMEWAEQ-LEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQG 606 (1195)
T ss_pred EEEECCCCHHHH-HHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccchHHHHHH
Confidence 888887754331 1222222 2568999999999852 121111 12345889999999999876 555544332
Q ss_pred H--HhcCCCCCcEEEEeccCCccCCCCChhcHHHHHHHHHhhcCCeeEeecchhhhhhcccCcceeeEeccCCCCcccch
Q 000384 193 F--YHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDL 270 (1590)
Q Consensus 193 ~--~~~~~~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~~~~~~~~l~~~~~~p~~~~~~y~~~~~~~~~l 270 (1590)
. +....+..++++||||..... . ..+...|... +...+.....+|. +.|..
T Consensus 607 L~~Lr~~fp~vPilALTATAT~~V--------~---eDI~~~L~l~-----~~~vfr~Sf~RpN---L~y~V-------- 659 (1195)
T PLN03137 607 LGILKQKFPNIPVLALTATATASV--------K---EDVVQALGLV-----NCVVFRQSFNRPN---LWYSV-------- 659 (1195)
T ss_pred HHHHHHhCCCCCeEEEEecCCHHH--------H---HHHHHHcCCC-----CcEEeecccCccc---eEEEE--------
Confidence 1 122234566899999965321 1 1222222110 0000000001110 00000
Q ss_pred hhhHHHhhhhhhhhHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHhHHHHHHHH
Q 000384 271 KGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIY 350 (1590)
Q Consensus 271 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~ 350 (1590)
...
T Consensus 660 ----------------------------v~k------------------------------------------------- 662 (1195)
T PLN03137 660 ----------------------------VPK------------------------------------------------- 662 (1195)
T ss_pred ----------------------------ecc-------------------------------------------------
Confidence 000
Q ss_pred hhhhHHHHHHHHHHHHHHhhhcCcchhhhccccCCccccccCCCCCHHHHHHHHHHHhcCCCCCcEEEEEEehHHHHHHH
Q 000384 351 RQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVV 430 (1590)
Q Consensus 351 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~ta~~L 430 (1590)
....+..+.+++... ..+.++||||.+|..++.+
T Consensus 663 --------------------------------------------~kk~le~L~~~I~~~--~~~esgIIYC~SRke~E~L 696 (1195)
T PLN03137 663 --------------------------------------------TKKCLEDIDKFIKEN--HFDECGIIYCLSRMDCEKV 696 (1195)
T ss_pred --------------------------------------------chhHHHHHHHHHHhc--ccCCCceeEeCchhHHHHH
Confidence 000011222222211 1134689999999999999
Q ss_pred HHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCceEEEEcccccccccCCCccEEEEccCCCCHHHHHH
Q 000384 431 ERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQ 510 (1590)
Q Consensus 431 ~~~L~~~~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fD~p~s~~~yiQ 510 (1590)
++.|.. .++.+..+||+ |+.++|..++++|++|+++|||||+++++|||+|++++||+||+|.++.+|+|
T Consensus 697 Ae~L~~----~Gika~~YHAG------Ls~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQ 766 (1195)
T PLN03137 697 AERLQE----FGHKAAFYHGS------MDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQ 766 (1195)
T ss_pred HHHHHH----CCCCeeeeeCC------CCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEEcCCCCCHHHHHh
Confidence 999987 57889999998 99999999999999999999999999999999999999999999999999999
Q ss_pred HhccccccCce--EEEEec
Q 000384 511 SRGRARQHNSQ--FILMLE 527 (1590)
Q Consensus 511 r~GRA~R~gs~--~ivlv~ 527 (1590)
|+|||||.|.. ++++..
T Consensus 767 riGRAGRDG~~g~cILlys 785 (1195)
T PLN03137 767 ECGRAGRDGQRSSCVLYYS 785 (1195)
T ss_pred hhcccCCCCCCceEEEEec
Confidence 99999999864 444443
|
|
| >KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=287.64 Aligned_cols=320 Identities=21% Similarity=0.283 Sum_probs=241.5
Q ss_pred CCCCcHHHHHHHHHHh-cCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhh---cC
Q 000384 43 NFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVH---TD 118 (1590)
Q Consensus 43 ~~~pR~yQ~e~le~~~-~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~---~~ 118 (1590)
.-.|...|..++..++ ++|+|+.+-.|+|||..+..-+.+.+ .-....-.+++|.||++|+.|..+++... ++
T Consensus 47 fekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~---d~~~r~tQ~lilsPTRELa~Qi~~vi~alg~~mn 123 (400)
T KOG0328|consen 47 FEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSL---DISVRETQALILSPTRELAVQIQKVILALGDYMN 123 (400)
T ss_pred cCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeec---ccccceeeEEEecChHHHHHHHHHHHHHhccccc
Confidence 3468899999998876 69999999999999986544322221 12233456999999999999999998874 57
Q ss_pred CceEEEecCCCCCccchHHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCCCcHHHHHHHHHhcCC
Q 000384 119 FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSD 198 (1590)
Q Consensus 119 ~~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~~~~~~im~~~~~~~~ 198 (1590)
+++..+.|+.+..+- .+..--+.+|+.+||+.+++++.++.+.-..+.++|+|||+.+... .+...+-..|...+
T Consensus 124 vq~hacigg~n~ged----ikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDemL~k-gfk~Qiydiyr~lp 198 (400)
T KOG0328|consen 124 VQCHACIGGKNLGED----IKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADEMLNK-GFKEQIYDIYRYLP 198 (400)
T ss_pred ceEEEEecCCccchh----hhhhcccceEeeCCCchHHHHHHhccccccceeEEEeccHHHHHHh-hHHHHHHHHHHhCC
Confidence 899999999876541 1223357899999999999999999999999999999999999876 66666666778888
Q ss_pred CCCcEEEEeccCCccCCCCChhcHHHHHHHHHhhcCCeeEeecchhhhhhcccCcceeeEeccCCCCcccchhhhHHHhh
Q 000384 199 NKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSW 278 (1590)
Q Consensus 199 ~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~~~~~~~~l~~~~~~p~~~~~~y~~~~~~~~~l~~~~~~~~ 278 (1590)
+..+++.+|||... +-++ ...+|.+.|....+.-+.... .+
T Consensus 199 ~~~Qvv~~SATlp~-----------eile-----------------mt~kfmtdpvrilvkrdeltl--Eg--------- 239 (400)
T KOG0328|consen 199 PGAQVVLVSATLPH-----------EILE-----------------MTEKFMTDPVRILVKRDELTL--EG--------- 239 (400)
T ss_pred CCceEEEEeccCcH-----------HHHH-----------------HHHHhcCCceeEEEecCCCch--hh---------
Confidence 89999999999542 1111 122333333222111100000 00
Q ss_pred hhhhhhHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHhHHHHHHHHhhhhHHHH
Q 000384 279 SKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCK 358 (1590)
Q Consensus 279 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (1590)
.+
T Consensus 240 ------------------------------------------------------------------------------IK 241 (400)
T KOG0328|consen 240 ------------------------------------------------------------------------------IK 241 (400)
T ss_pred ------------------------------------------------------------------------------hh
Confidence 00
Q ss_pred HHHHHHHHHHhhhcCcchhhhccccCCccccccCCCCCHHHHHHHHHHHhcCCCCCcEEEEEEehHHHHHHHHHHHhhCC
Q 000384 359 YFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVP 438 (1590)
Q Consensus 359 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~ 438 (1590)
.|+ .. ...-..|...|.++.+... -.+++|||+++..++.|.+.+..
T Consensus 242 qf~-----------v~-----------------ve~EewKfdtLcdLYd~Lt---ItQavIFcnTk~kVdwLtekm~~-- 288 (400)
T KOG0328|consen 242 QFF-----------VA-----------------VEKEEWKFDTLCDLYDTLT---ITQAVIFCNTKRKVDWLTEKMRE-- 288 (400)
T ss_pred hhe-----------ee-----------------echhhhhHhHHHHHhhhhe---hheEEEEecccchhhHHHHHHHh--
Confidence 000 00 0011347777777766543 35799999999999999999988
Q ss_pred CCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCceEEEEcccccccccCCCccEEEEccCCCCHHHHHHHhcccccc
Q 000384 439 FLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQH 518 (1590)
Q Consensus 439 ~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fD~p~s~~~yiQr~GRA~R~ 518 (1590)
.++.+..+||+ |.+++|.++++.||+|+.++||+|+|-.+|||+|.+++||+||+|.+...||||+||.||.
T Consensus 289 --~nftVssmHGD------m~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRF 360 (400)
T KOG0328|consen 289 --ANFTVSSMHGD------MEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRF 360 (400)
T ss_pred --hCceeeeccCC------cchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEecCCCccHHHHhhhhcccccc
Confidence 68899999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred Cce--EEEEecc
Q 000384 519 NSQ--FILMLER 528 (1590)
Q Consensus 519 gs~--~ivlv~~ 528 (1590)
|.+ .+-++..
T Consensus 361 GRkGvainFVk~ 372 (400)
T KOG0328|consen 361 GRKGVAINFVKS 372 (400)
T ss_pred CCcceEEEEecH
Confidence 987 3334433
|
|
| >PHA02558 uvsW UvsW helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-31 Score=329.73 Aligned_cols=324 Identities=22% Similarity=0.259 Sum_probs=216.3
Q ss_pred CCCCcHHHHHHHHHHh-cCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhhcCC--
Q 000384 43 NFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDF-- 119 (1590)
Q Consensus 43 ~~~pR~yQ~e~le~~~-~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~~~-- 119 (1590)
.+.||+||.+++..++ ++++|+++|||+|||+++..+++..+. ....++||||||++|+.||.++++++...
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~-----~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~ 186 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLE-----NYEGKVLIIVPTTSLVTQMIDDFVDYRLFPR 186 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHh-----cCCCeEEEEECcHHHHHHHHHHHHHhccccc
Confidence 4799999999998877 477999999999999998877665544 22336999999999999999999987642
Q ss_pred -ceEEEecCCCCCccchHHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCCCcHHHHHHHHHhcCC
Q 000384 120 -EVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSD 198 (1590)
Q Consensus 120 -~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~~~~~~im~~~~~~~~ 198 (1590)
.+..+.|+.... ...+|+|+|+|.+.+.... .+.++++||+|||||+.+. .+..++..+ .
T Consensus 187 ~~~~~i~~g~~~~-----------~~~~I~VaT~qsl~~~~~~---~~~~~~~iIvDEaH~~~~~-~~~~il~~~----~ 247 (501)
T PHA02558 187 EAMHKIYSGTAKD-----------TDAPIVVSTWQSAVKQPKE---WFDQFGMVIVDECHLFTGK-SLTSIITKL----D 247 (501)
T ss_pred cceeEEecCcccC-----------CCCCEEEeeHHHHhhchhh---hccccCEEEEEchhcccch-hHHHHHHhh----h
Confidence 333444443211 2579999999999764432 3578999999999999764 566666543 3
Q ss_pred CCCcEEEEeccCCccCCCCChhcHHHHHHHHHhhcCCeeEeecchhhhh-hcccCcceeeEeccCCCCcccchhhhHHHh
Q 000384 199 NKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEME-VFVPSAKESCRFYDQSKFCGSDLKGKLEVS 277 (1590)
Q Consensus 199 ~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~~~~~~~~l~-~~~~~p~~~~~~y~~~~~~~~~l~~~~~~~ 277 (1590)
+.++++||||||...... ...+...++...+.++..+.+. .++..+....+.......
T Consensus 248 ~~~~~lGLTATp~~~~~~---------~~~~~~~fG~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~------------ 306 (501)
T PHA02558 248 NCKFKFGLTGSLRDGKAN---------ILQYVGLFGDIFKPVTTSQLMEEGQVTDLKINSIFLRYPDE------------ 306 (501)
T ss_pred ccceEEEEeccCCCcccc---------HHHHHHhhCCceEEecHHHHHhCCCcCCceEEEEeccCCHH------------
Confidence 457899999999643311 1223334444333332211111 111111111000000000
Q ss_pred hhhhhhhHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHhHHHHHHHHhhhhHHH
Q 000384 278 WSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQC 357 (1590)
Q Consensus 278 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (1590)
... .+. -+.|.
T Consensus 307 ------------------------~~~----~~~------------~~~~~----------------------------- 317 (501)
T PHA02558 307 ------------------------DRV----KLK------------GEDYQ----------------------------- 317 (501)
T ss_pred ------------------------Hhh----hhc------------ccchH-----------------------------
Confidence 000 000 00000
Q ss_pred HHHHHHHHHHHhhhcCcchhhhccccCCccccccCCCCCHHHHHHHHHHHhcCCCCCcEEEEEEehHHHHHHHHHHHhhC
Q 000384 358 KYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKV 437 (1590)
Q Consensus 358 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~ 437 (1590)
+....+. ....+...+.+++.... ..+.+++||++++.+++.|++.|+.
T Consensus 318 -----~~~~~l~------------------------~~~~Rn~~I~~~~~~~~-~~~~~~lV~~~~~~h~~~L~~~L~~- 366 (501)
T PHA02558 318 -----EEIKYIT------------------------SHTKRNKWIANLALKLA-KKGENTFVMFKYVEHGKPLYEMLKK- 366 (501)
T ss_pred -----HHHHHHh------------------------ccHHHHHHHHHHHHHHH-hcCCCEEEEEEEHHHHHHHHHHHHH-
Confidence 0000000 00112222223222222 2345788888999999999999998
Q ss_pred CCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCceEEEEc-ccccccccCCCccEEEEccCCCCHHHHHHHhcccc
Q 000384 438 PFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFAT-DVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRAR 516 (1590)
Q Consensus 438 ~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~~vLVaT-~vleeGIDip~~~~VI~fD~p~s~~~yiQr~GRA~ 516 (1590)
.+..+..+||. |+.++|..+++.|++|+..+|||| ++++||+|+|++++||.++++.+...|+||+||++
T Consensus 367 ---~g~~v~~i~G~------~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~ 437 (501)
T PHA02558 367 ---VYDKVYYVSGE------VDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVL 437 (501)
T ss_pred ---cCCCEEEEeCC------CCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEEEecCCcchhhhhhhhhccc
Confidence 46789999998 899999999999999999999998 89999999999999999999999999999999999
Q ss_pred ccCc
Q 000384 517 QHNS 520 (1590)
Q Consensus 517 R~gs 520 (1590)
|.+.
T Consensus 438 R~~~ 441 (501)
T PHA02558 438 RKHG 441 (501)
T ss_pred cCCC
Confidence 9764
|
|
| >PRK11057 ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-31 Score=338.65 Aligned_cols=313 Identities=17% Similarity=0.249 Sum_probs=216.6
Q ss_pred CCCcHHHHHHHHHHh-cCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhhcCCceE
Q 000384 44 FIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVE 122 (1590)
Q Consensus 44 ~~pR~yQ~e~le~~~-~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~~~~v~ 122 (1590)
-.+|++|.++++.++ ++|+++++|||+|||+++++++... .+.++|++|+++|+.||.+.++.. ++.+.
T Consensus 24 ~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~---------~g~tlVisPl~sL~~dqv~~l~~~-gi~~~ 93 (607)
T PRK11057 24 QQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL---------DGLTLVVSPLISLMKDQVDQLLAN-GVAAA 93 (607)
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc---------CCCEEEEecHHHHHHHHHHHHHHc-CCcEE
Confidence 368999999999987 5899999999999999998876532 235899999999999999999865 77777
Q ss_pred EEecCCCCCccchHHHHHh-cCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCC-CcHHHHHHHH--HhcCC
Q 000384 123 EYYGAKGVDEWDSQCWQKE-INKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGN-HPYTKIMKEF--YHKSD 198 (1590)
Q Consensus 123 ~~~G~~~~d~~~~~~w~~~-~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~-~~~~~im~~~--~~~~~ 198 (1590)
.+.+....+.. ...+... ....+++++||+.|........+...++++||+||||++..+ |.++..+..+ +....
T Consensus 94 ~~~s~~~~~~~-~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~~ 172 (607)
T PRK11057 94 CLNSTQTREQQ-LEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQRF 172 (607)
T ss_pred EEcCCCCHHHH-HHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcccHHHHHHHHHHHhC
Confidence 77766543321 1222222 245789999999986422212234467899999999999865 4444332221 11222
Q ss_pred CCCcEEEEeccCCccCCCCChhcHHHHHHHHHhhcCCeeEeecchhhhhhcccCcceeeEeccCCCCcccchhhhHHHhh
Q 000384 199 NKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSW 278 (1590)
Q Consensus 199 ~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~~~~~~~~l~~~~~~p~~~~~~y~~~~~~~~~l~~~~~~~~ 278 (1590)
+..++++||||+.... ...+...++. ..|......+.....
T Consensus 173 p~~~~v~lTAT~~~~~-----------~~di~~~l~l---------------~~~~~~~~~~~r~nl------------- 213 (607)
T PRK11057 173 PTLPFMALTATADDTT-----------RQDIVRLLGL---------------NDPLIQISSFDRPNI------------- 213 (607)
T ss_pred CCCcEEEEecCCChhH-----------HHHHHHHhCC---------------CCeEEEECCCCCCcc-------------
Confidence 4567899999976321 1111111110 001000000000000
Q ss_pred hhhhhhHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHhHHHHHHHHhhhhHHHH
Q 000384 279 SKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCK 358 (1590)
Q Consensus 279 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (1590)
.|....
T Consensus 214 ----------------~~~v~~---------------------------------------------------------- 219 (607)
T PRK11057 214 ----------------RYTLVE---------------------------------------------------------- 219 (607)
T ss_pred ----------------eeeeee----------------------------------------------------------
Confidence 000000
Q ss_pred HHHHHHHHHHhhhcCcchhhhccccCCccccccCCCCCHHHHHHHHHHHhcCCCCCcEEEEEEehHHHHHHHHHHHhhCC
Q 000384 359 YFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVP 438 (1590)
Q Consensus 359 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~ 438 (1590)
...++..+...+.. ..+.++||||+++..++.+++.|..
T Consensus 220 ------------------------------------~~~~~~~l~~~l~~---~~~~~~IIFc~tr~~~e~la~~L~~-- 258 (607)
T PRK11057 220 ------------------------------------KFKPLDQLMRYVQE---QRGKSGIIYCNSRAKVEDTAARLQS-- 258 (607)
T ss_pred ------------------------------------ccchHHHHHHHHHh---cCCCCEEEEECcHHHHHHHHHHHHh--
Confidence 00112223333332 2345799999999999999999988
Q ss_pred CCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCceEEEEcccccccccCCCccEEEEccCCCCHHHHHHHhcccccc
Q 000384 439 FLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQH 518 (1590)
Q Consensus 439 ~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fD~p~s~~~yiQr~GRA~R~ 518 (1590)
.++.+..+||+ |+.++|.+++++|++|+++|||||+++++|||+|++++||+||.|.|..+|+||+|||||.
T Consensus 259 --~g~~v~~~Ha~------l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~ 330 (607)
T PRK11057 259 --RGISAAAYHAG------LDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRD 330 (607)
T ss_pred --CCCCEEEecCC------CCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCC
Confidence 57889999998 9999999999999999999999999999999999999999999999999999999999998
Q ss_pred Cc--eEEEEeccc
Q 000384 519 NS--QFILMLERS 529 (1590)
Q Consensus 519 gs--~~ivlv~~~ 529 (1590)
|. ..++++...
T Consensus 331 G~~~~~ill~~~~ 343 (607)
T PRK11057 331 GLPAEAMLFYDPA 343 (607)
T ss_pred CCCceEEEEeCHH
Confidence 85 355555443
|
|
| >PRK04914 ATP-dependent helicase HepA; Validated | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.1e-31 Score=342.19 Aligned_cols=429 Identities=16% Similarity=0.178 Sum_probs=236.2
Q ss_pred CCCCCCcHHHHHHHHHHhc---CCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhhc
Q 000384 41 SINFIPRIYQLKVFEVAKR---RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT 117 (1590)
Q Consensus 41 ~~~~~pR~yQ~e~le~~~~---~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~ 117 (1590)
...+.|.|||.+++..+.. .++|+++++|.|||+.|.+++.+++. .+..+++|||||+ .|+.||..++.+.+
T Consensus 148 ~~~~~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~----~g~~~rvLIVvP~-sL~~QW~~El~~kF 222 (956)
T PRK04914 148 GARASLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLL----TGRAERVLILVPE-TLQHQWLVEMLRRF 222 (956)
T ss_pred cCCCCCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHH----cCCCCcEEEEcCH-HHHHHHHHHHHHHh
Confidence 3578899999999988754 57999999999999999999988765 3455679999998 89999999999988
Q ss_pred CCceEEEecCCCCCccchHHHHHhcCCCcEEEEcHHHHHHHH-HhcCcCccceeEEEEeccccccCC--Cc---HHHHHH
Q 000384 118 DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL-RKAFLSLDIVCFIVIDECHHATGN--HP---YTKIMK 191 (1590)
Q Consensus 118 ~~~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l-~~~~~~l~~i~lII~DEaH~~~~~--~~---~~~im~ 191 (1590)
++.+.++.++.....+... ...+...+++|+|++.+...- ....+.-..|++||+|||||+... .+ |..+ .
T Consensus 223 ~l~~~i~~~~~~~~~~~~~--~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v-~ 299 (956)
T PRK04914 223 NLRFSLFDEERYAEAQHDA--DNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVV-E 299 (956)
T ss_pred CCCeEEEcCcchhhhcccc--cCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHH-H
Confidence 9888777655322111000 012236789999999986521 111223357999999999999721 11 3322 2
Q ss_pred HHHhcCCCCCcEEEEeccCCccCCCCChhcHHHHHHHHHhhcCCeeEeecchhhhhh----cccCcceeeEeccCCCCcc
Q 000384 192 EFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEV----FVPSAKESCRFYDQSKFCG 267 (1590)
Q Consensus 192 ~~~~~~~~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~~~~~~~~l~~----~~~~p~~~~~~y~~~~~~~ 267 (1590)
.+ ....+++|+|||||++++. ..+-.+-.+|+...+. +...+.. |.+.............. .
T Consensus 300 ~L---a~~~~~~LLLTATP~q~~~--------~e~falL~lLdP~~f~--~~~~F~~e~~~~~~~a~~v~~l~~~~~~-~ 365 (956)
T PRK04914 300 QL---AEVIPGVLLLTATPEQLGQ--------ESHFARLRLLDPDRFH--DYEAFVEEQQQYRPVADAVQALLAGEKL-S 365 (956)
T ss_pred HH---hhccCCEEEEEcCcccCCc--------HHHHHhhhhhCCCcCC--CHHHHHHHHHhhHHHHHHHHHHhcCCcC-C
Confidence 22 2346899999999998652 1122333455543321 1111100 00000000000000000 0
Q ss_pred cchhhhHHHhhhhhhhhHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHhHhHHHH
Q 000384 268 SDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICA-YEAVKICLEKVLKAQEE 346 (1590)
Q Consensus 268 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~a-~~~~~~~~~~~~~~~~~ 346 (1590)
....+.+...... ..+..+...+...-..-......+.+. .++..|.--. .+.-+............
T Consensus 366 ~~~~~~l~~ll~~--~~~~~l~~~~~~~~~~~~~~~~~~i~~----------L~d~hg~~rvm~RntR~~v~~fp~R~~~ 433 (956)
T PRK04914 366 DDALNALGELLGE--QDIEPLLQAANSDSEEAQAARQELISE----------LLDRHGTGRVLFRNTRAAVKGFPKRELH 433 (956)
T ss_pred HHHHHHHHHHhcc--cchhHHHhhhcccccccHHHHHHHHHH----------HHhhcCcceEEEeccHHhhcCCCcCcee
Confidence 0000000000000 000000000000000000000000000 0000000000 00000000000000000
Q ss_pred HHHHhhhhHHHHHHHH-HHHHHHhhhcCcchhhhccccCCccccccCCCCCHHHHHHHHHHHhcCCCCCcEEEEEEehHH
Q 000384 347 CEIYRQSSLQCKYFLE-EVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERII 425 (1590)
Q Consensus 347 ~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~ 425 (1590)
. ..-.....+...+. .........+.. ...... . .........++|+..|.+++.... +.|+||||+++.
T Consensus 434 ~-~~l~~~~~y~~~~~~~~~~~~~~~l~p-e~~~~~--~--~~~~~~~~~d~Ki~~L~~~L~~~~---~~KvLVF~~~~~ 504 (956)
T PRK04914 434 P-IPLPLPEQYQTAIKVSLEARARDMLYP-EQIYQE--F--EDNATWWNFDPRVEWLIDFLKSHR---SEKVLVICAKAA 504 (956)
T ss_pred E-eecCCCHHHHHHHHHhHHHHHHhhcCH-HHHHHH--H--hhhhhccccCHHHHHHHHHHHhcC---CCeEEEEeCcHH
Confidence 0 00000000000000 000000000000 000000 0 000001124789999999998643 569999999999
Q ss_pred HHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCC--CceEEEEcccccccccCCCccEEEEccCCC
Q 000384 426 AAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGG--KVNLLFATDVIEEGMHVPNCSYVIRFDLPK 503 (1590)
Q Consensus 426 ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g--~~~vLVaT~vleeGIDip~~~~VI~fD~p~ 503 (1590)
++..|.+.|... .++.+..+||+ |+..+|.++++.|+++ .++|||||+++++|+|++.|++||+||+||
T Consensus 505 t~~~L~~~L~~~---~Gi~~~~ihG~------~s~~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~ 575 (956)
T PRK04914 505 TALQLEQALRER---EGIRAAVFHEG------MSIIERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPF 575 (956)
T ss_pred HHHHHHHHHhhc---cCeeEEEEECC------CCHHHHHHHHHHHhcCCCCccEEEechhhccCCCcccccEEEEecCCC
Confidence 999999999542 57899999998 9999999999999985 599999999999999999999999999999
Q ss_pred CHHHHHHHhccccccCce
Q 000384 504 TVSSYIQSRGRARQHNSQ 521 (1590)
Q Consensus 504 s~~~yiQr~GRA~R~gs~ 521 (1590)
|+..|+||+||++|.|++
T Consensus 576 nP~~~eQRIGR~~RiGQ~ 593 (956)
T PRK04914 576 NPDLLEQRIGRLDRIGQK 593 (956)
T ss_pred CHHHHHHHhcccccCCCC
Confidence 999999999999999986
|
|
| >KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.98 E-value=9.9e-33 Score=294.70 Aligned_cols=320 Identities=21% Similarity=0.285 Sum_probs=247.7
Q ss_pred CCCcHHHHHHHHHHh-cCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHH---HHHhhcCC
Q 000384 44 FIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYD---VIRVHTDF 119 (1590)
Q Consensus 44 ~~pR~yQ~e~le~~~-~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~---~i~~~~~~ 119 (1590)
-.|.|.|.|.++.++ ++|+++-+..|+|||-+++.++.+.+. .....-.++++|||++|+-|..+ ++.+++++
T Consensus 106 ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid---~~~~~IQ~~ilVPtrelALQtSqvc~~lskh~~i 182 (459)
T KOG0326|consen 106 EKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKID---PKKNVIQAIILVPTRELALQTSQVCKELSKHLGI 182 (459)
T ss_pred CCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcC---ccccceeEEEEeecchhhHHHHHHHHHHhcccCe
Confidence 358899999999988 699999999999999999998877664 33444568999999999887655 45567899
Q ss_pred ceEEEecCCCCCccchHHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCCCcHHHHHHHHHhcCCC
Q 000384 120 EVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDN 199 (1590)
Q Consensus 120 ~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~~~~~~im~~~~~~~~~ 199 (1590)
.|...+|+.+..+ ...+..+..+++|+||+.++++...+-..+++..++|+|||+.+... .|..++.......+.
T Consensus 183 ~vmvttGGT~lrD----DI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKlLs~-~F~~~~e~li~~lP~ 257 (459)
T KOG0326|consen 183 KVMVTTGGTSLRD----DIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKLLSV-DFQPIVEKLISFLPK 257 (459)
T ss_pred EEEEecCCccccc----ceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhhhhhch-hhhhHHHHHHHhCCc
Confidence 9999999987543 12234457899999999999999999999999999999999999875 788888888888888
Q ss_pred CCcEEEEeccCCccCCCCChhcHHHHHHHHHhhcCCeeEeecchhhhhhcccCcceeeEeccCCCCcccchhhhHHHhhh
Q 000384 200 KPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWS 279 (1590)
Q Consensus 200 ~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~~~~~~~~l~~~~~~p~~~~~~y~~~~~~~~~l~~~~~~~~~ 279 (1590)
..+++..|||--.. -..-+.+++.+|-+....
T Consensus 258 ~rQillySATFP~t----------------------------Vk~Fm~~~l~kPy~INLM-------------------- 289 (459)
T KOG0326|consen 258 ERQILLYSATFPLT----------------------------VKGFMDRHLKKPYEINLM-------------------- 289 (459)
T ss_pred cceeeEEecccchh----------------------------HHHHHHHhccCcceeehh--------------------
Confidence 99999999993210 011222334444221110
Q ss_pred hhhhhHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHhHHHHHHHHhhhhHHHHH
Q 000384 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKY 359 (1590)
Q Consensus 280 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (1590)
++|-+... .++..
T Consensus 290 ------------------------------------------~eLtl~Gv-------------------------tQyYa 302 (459)
T KOG0326|consen 290 ------------------------------------------EELTLKGV-------------------------TQYYA 302 (459)
T ss_pred ------------------------------------------hhhhhcch-------------------------hhhee
Confidence 00000000 00000
Q ss_pred HHHHHHHHHhhhcCcchhhhccccCCccccccCCCCCHHHHHHHHHHHhcCCCCCcEEEEEEehHHHHHHHHHHHhhCCC
Q 000384 360 FLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPF 439 (1590)
Q Consensus 360 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~ 439 (1590)
|. ..+.|+..|-.++.... -.++||||++...++.|++.+..+
T Consensus 303 fV--------------------------------~e~qKvhCLntLfskLq---INQsIIFCNS~~rVELLAkKITel-- 345 (459)
T KOG0326|consen 303 FV--------------------------------EERQKVHCLNTLFSKLQ---INQSIIFCNSTNRVELLAKKITEL-- 345 (459)
T ss_pred ee--------------------------------chhhhhhhHHHHHHHhc---ccceEEEeccchHhHHHHHHHHhc--
Confidence 00 01567877777776654 237999999999999999998884
Q ss_pred CCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCceEEEEcccccccccCCCccEEEEccCCCCHHHHHHHhccccccC
Q 000384 440 LTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHN 519 (1590)
Q Consensus 440 ~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fD~p~s~~~yiQr~GRA~R~g 519 (1590)
++.|.++|.. |.++.|..++..||+|.|+.||||+.+.+|||+|++|+||+||.|.+..+|.||+||+||.|
T Consensus 346 --GyscyyiHak------M~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFG 417 (459)
T KOG0326|consen 346 --GYSCYYIHAK------MAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFG 417 (459)
T ss_pred --cchhhHHHHH------HHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCC
Confidence 7889999998 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred ce--EEEEeccchH
Q 000384 520 SQ--FILMLERSER 531 (1590)
Q Consensus 520 s~--~ivlv~~~E~ 531 (1590)
.- .+-++.-+++
T Consensus 418 hlGlAInLityedr 431 (459)
T KOG0326|consen 418 HLGLAINLITYEDR 431 (459)
T ss_pred CcceEEEEEehhhh
Confidence 74 4445543443
|
|
| >KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.2e-31 Score=304.21 Aligned_cols=345 Identities=22% Similarity=0.305 Sum_probs=236.9
Q ss_pred CCCCCcHHHHHHHHHHh-cCCEEEEeCCCChHHHHHHHHHHHHHHHHH------hCCCCeEEEEEecChhhHHHHHHHHH
Q 000384 42 INFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIK------SNGFKKLIIFLAPTVHLVHQQYDVIR 114 (1590)
Q Consensus 42 ~~~~pR~yQ~e~le~~~-~~n~Ii~~~TGsGKTliailli~~~l~~~~------~~~~~~~vl~LvPt~~Lv~Qq~~~i~ 114 (1590)
.-..|.|.|..++...+ .+|+|.+++||||||..+++++...+..+. ..-.++.+++|+||++|+.|..++-.
T Consensus 264 ~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~ 343 (673)
T KOG0333|consen 264 GYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETN 343 (673)
T ss_pred CCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHH
Confidence 34678999999999776 499999999999999999987776654222 23346779999999999999988766
Q ss_pred hh---cCCceEEEecCCCCCccchHHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCC---CcHHH
Q 000384 115 VH---TDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGN---HPYTK 188 (1590)
Q Consensus 115 ~~---~~~~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~---~~~~~ 188 (1590)
++ +++++..+.|+.+.++.. ..+..+|+|+|+||+.|.+.|.+.++.+++...+|+|||+++.+- ..+..
T Consensus 344 kf~~~lg~r~vsvigg~s~EEq~----fqls~gceiviatPgrLid~Lenr~lvl~qctyvvldeadrmiDmgfE~dv~~ 419 (673)
T KOG0333|consen 344 KFGKPLGIRTVSVIGGLSFEEQG----FQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMIDMGFEPDVQK 419 (673)
T ss_pred HhcccccceEEEEecccchhhhh----hhhhccceeeecCchHHHHHHHHHHHHhccCceEeccchhhhhcccccHHHHH
Confidence 65 579999999998766522 234568999999999999999999999999999999999999853 22455
Q ss_pred HHHHHHhcCCCCCcEEEEeccCCccCCCCChhcHHHHHHHHHhhcCCeeEeecchhhhhhcccCcceeeEeccCCCCccc
Q 000384 189 IMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGS 268 (1590)
Q Consensus 189 im~~~~~~~~~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~~~~~~~~l~~~~~~p~~~~~~y~~~~~~~~ 268 (1590)
++... |..+....+.. .+.-..+-..+ ...+ +|..+..++.
T Consensus 420 iL~~m----------------Pssn~k~~tde--~~~~~~~~~~~-----------------~~~k----~yrqT~mfta 460 (673)
T KOG0333|consen 420 ILEQM----------------PSSNAKPDTDE--KEGEERVRKNF-----------------SSSK----KYRQTVMFTA 460 (673)
T ss_pred HHHhC----------------CccccCCCccc--hhhHHHHHhhc-----------------cccc----ceeEEEEEec
Confidence 54421 22221100000 00000111111 0000 1111111111
Q ss_pred chhhhHHHhhhhhhhhHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHhHHHHHH
Q 000384 269 DLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECE 348 (1590)
Q Consensus 269 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~ 348 (1590)
+ ++..+..+.+.+...+.-+. ...+|
T Consensus 461 t-----------------------------m~p~verlar~ylr~pv~vt--ig~~g----------------------- 486 (673)
T KOG0333|consen 461 T-----------------------------MPPAVERLARSYLRRPVVVT--IGSAG----------------------- 486 (673)
T ss_pred C-----------------------------CChHHHHHHHHHhhCCeEEE--eccCC-----------------------
Confidence 1 11111111111100000000 00000
Q ss_pred HHhhhhHHHHHHHHHHHHHHhhhcCcchhhhccccCCccccccCCCCCHHHHHHHHHHHhcCCCCCcEEEEEEehHHHHH
Q 000384 349 IYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAK 428 (1590)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~ta~ 428 (1590)
.....+++ .+..-..+.|..+|+++|+... +..+|||||++..++
T Consensus 487 --------------k~~~rveQ------------------~v~m~~ed~k~kkL~eil~~~~---~ppiIIFvN~kk~~d 531 (673)
T KOG0333|consen 487 --------------KPTPRVEQ------------------KVEMVSEDEKRKKLIEILESNF---DPPIIIFVNTKKGAD 531 (673)
T ss_pred --------------CCccchhe------------------EEEEecchHHHHHHHHHHHhCC---CCCEEEEEechhhHH
Confidence 00000000 0111233788999999998763 457999999999999
Q ss_pred HHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCceEEEEcccccccccCCCccEEEEccCCCCHHHH
Q 000384 429 VVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSY 508 (1590)
Q Consensus 429 ~L~~~L~~~~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fD~p~s~~~y 508 (1590)
.|++.|.+ .++++..+||+ -++++|+.+|+.||+|..+|||||+|+++|||||++.+||+||++.+...|
T Consensus 532 ~lAk~LeK----~g~~~~tlHg~------k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDY 601 (673)
T KOG0333|consen 532 ALAKILEK----AGYKVTTLHGG------KSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDY 601 (673)
T ss_pred HHHHHHhh----ccceEEEeeCC------ccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHH
Confidence 99999999 57999999998 589999999999999999999999999999999999999999999999999
Q ss_pred HHHhccccccCce--EEEEecc
Q 000384 509 IQSRGRARQHNSQ--FILMLER 528 (1590)
Q Consensus 509 iQr~GRA~R~gs~--~ivlv~~ 528 (1590)
+||+||+||+|.. .+.++..
T Consensus 602 tHRIGRTgRAGk~GtaiSflt~ 623 (673)
T KOG0333|consen 602 THRIGRTGRAGKSGTAISFLTP 623 (673)
T ss_pred HHHhccccccccCceeEEEecc
Confidence 9999999999974 5566644
|
|
| >KOG0343 consensus RNA Helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.7e-31 Score=302.40 Aligned_cols=334 Identities=19% Similarity=0.267 Sum_probs=252.0
Q ss_pred CCCCCcHHHHHHHHHHh-cCCEEEEeCCCChHHHHHHHHHHHHHHH-HHhCCCCeEEEEEecChhhHHHHHHHHHh---h
Q 000384 42 INFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQA-IKSNGFKKLIIFLAPTVHLVHQQYDVIRV---H 116 (1590)
Q Consensus 42 ~~~~pR~yQ~e~le~~~-~~n~Ii~~~TGsGKTliailli~~~l~~-~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~---~ 116 (1590)
.-+.+.+.|...+..++ ++++|.++-||||||++++.++.+.+.. ......+--+|||.||++|+.|.++++.+ +
T Consensus 88 ~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtFevL~kvgk~ 167 (758)
T KOG0343|consen 88 KFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQTFEVLNKVGKH 167 (758)
T ss_pred CCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHHHHHHHHHHHHHHhhc
Confidence 45678999999999887 6999999999999999999988776542 22334455599999999999999999877 5
Q ss_pred cCCceEEEecCCCCCccchHHHHHhcCCCcEEEEcHHHHHHHHHhc-CcCccceeEEEEeccccccCCCcHHHHHHHHHh
Q 000384 117 TDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA-FLSLDIVCFIVIDECHHATGNHPYTKIMKEFYH 195 (1590)
Q Consensus 117 ~~~~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~~-~~~l~~i~lII~DEaH~~~~~~~~~~im~~~~~ 195 (1590)
.++..+.+.|+..+.. -...+.+.+|+||||+.|+..+... .+.-.++.++|+|||+++.+- .|...|..+..
T Consensus 168 h~fSaGLiiGG~~~k~-----E~eRi~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR~LDM-GFk~tL~~Ii~ 241 (758)
T KOG0343|consen 168 HDFSAGLIIGGKDVKF-----ELERISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADRMLDM-GFKKTLNAIIE 241 (758)
T ss_pred cccccceeecCchhHH-----HHHhhhcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHHHHHH-hHHHHHHHHHH
Confidence 6899999999986543 2344568999999999999998765 556688999999999999875 67777877777
Q ss_pred cCCCCCcEEEEeccCCccCCCCChhcHHHHHHHHHhhcCCeeEeecchhhhhhcccCcceeeEeccCCCCcccchhhhHH
Q 000384 196 KSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLE 275 (1590)
Q Consensus 196 ~~~~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~~~~~~~~l~~~~~~p~~~~~~y~~~~~~~~~l~~~~~ 275 (1590)
..+...+.|++|||+..+ ..+|.++ .+..|.- +..+.......
T Consensus 242 ~lP~~RQTLLFSATqt~s------------vkdLaRL----------------sL~dP~~-vsvhe~a~~at-------- 284 (758)
T KOG0343|consen 242 NLPKKRQTLLFSATQTKS------------VKDLARL----------------SLKDPVY-VSVHENAVAAT-------- 284 (758)
T ss_pred hCChhheeeeeecccchh------------HHHHHHh----------------hcCCCcE-EEEeccccccC--------
Confidence 778888899999998643 2333322 0011111 11111000000
Q ss_pred HhhhhhhhhHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHhHHHHHHHHhhhhH
Q 000384 276 VSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSL 355 (1590)
Q Consensus 276 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (1590)
...++..|..
T Consensus 285 -------------P~~L~Q~y~~--------------------------------------------------------- 294 (758)
T KOG0343|consen 285 -------------PSNLQQSYVI--------------------------------------------------------- 294 (758)
T ss_pred -------------hhhhhheEEE---------------------------------------------------------
Confidence 0000000000
Q ss_pred HHHHHHHHHHHHHhhhcCcchhhhccccCCccccccCCCCCHHHHHHHHHHHhcCCCCCcEEEEEEehHHHHHHHHHHHh
Q 000384 356 QCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVK 435 (1590)
Q Consensus 356 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~ 435 (1590)
-....|+..|...+..+. ..+.|||+.+-..+..+++.+.
T Consensus 295 -------------------------------------v~l~~Ki~~L~sFI~shl---k~K~iVF~SscKqvkf~~e~F~ 334 (758)
T KOG0343|consen 295 -------------------------------------VPLEDKIDMLWSFIKSHL---KKKSIVFLSSCKQVKFLYEAFC 334 (758)
T ss_pred -------------------------------------EehhhHHHHHHHHHHhcc---ccceEEEEehhhHHHHHHHHHH
Confidence 012457777777776643 4689999999999999999999
Q ss_pred hCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCceEEEEcccccccccCCCccEEEEccCCCCHHHHHHHhccc
Q 000384 436 KVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRA 515 (1590)
Q Consensus 436 ~~~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fD~p~s~~~yiQr~GRA 515 (1590)
++. +++....+||. |+++.|.++..+|-...--||+||+|+.+|||+|++|.||.+|.|.++.+||||+||+
T Consensus 335 rlr--pg~~l~~L~G~------~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRt 406 (758)
T KOG0343|consen 335 RLR--PGIPLLALHGT------MSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRT 406 (758)
T ss_pred hcC--CCCceeeeccc------hhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhh
Confidence 874 68889999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCc---eEEEEeccc-hHHhhhh
Q 000384 516 RQHNS---QFILMLERS-ERSVTDT 536 (1590)
Q Consensus 516 ~R~gs---~~ivlv~~~-E~~~~~~ 536 (1590)
.|.+. .+++++..+ |..+.+.
T Consensus 407 AR~~~~G~sll~L~psEeE~~l~~L 431 (758)
T KOG0343|consen 407 ARYKERGESLLMLTPSEEEAMLKKL 431 (758)
T ss_pred hcccCCCceEEEEcchhHHHHHHHH
Confidence 88543 466665555 3344443
|
|
| >TIGR01389 recQ ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.2e-31 Score=336.64 Aligned_cols=309 Identities=20% Similarity=0.260 Sum_probs=219.8
Q ss_pred CCcHHHHHHHHHHh-cCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhhcCCceEE
Q 000384 45 IPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEE 123 (1590)
Q Consensus 45 ~pR~yQ~e~le~~~-~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~~~~v~~ 123 (1590)
.+|++|.++++.++ ++|+++++|||+|||+++.+++.. . .+.++||+|+++|+.||.+.++.. ++.+..
T Consensus 13 ~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~--~-------~g~~lVisPl~sL~~dq~~~l~~~-gi~~~~ 82 (591)
T TIGR01389 13 DFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALL--L-------KGLTVVISPLISLMKDQVDQLRAA-GVAAAY 82 (591)
T ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHH--c-------CCcEEEEcCCHHHHHHHHHHHHHc-CCcEEE
Confidence 58999999999988 599999999999999999887542 1 235899999999999999999874 888888
Q ss_pred EecCCCCCccchHHHHH-hcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCC-CcHHHHHHH---HHhcCC
Q 000384 124 YYGAKGVDEWDSQCWQK-EINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGN-HPYTKIMKE---FYHKSD 198 (1590)
Q Consensus 124 ~~G~~~~d~~~~~~w~~-~~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~-~~~~~im~~---~~~~~~ 198 (1590)
++|+...+.. ...+.. .....+|+++||+.|........+...++++|||||||++..+ |.++..+.. +....+
T Consensus 83 ~~s~~~~~~~-~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~~~~ 161 (591)
T TIGR01389 83 LNSTLSAKEQ-QDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAERFP 161 (591)
T ss_pred EeCCCCHHHH-HHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHHHhCC
Confidence 8887654432 222333 2356899999999996544444556678999999999999865 444332222 222233
Q ss_pred CCCcEEEEeccCCccCCCCChhcHHHHHHHHHhhcCCeeEeecchhhhhhcccCcceeeEecc-CCCCcccchhhhHHHh
Q 000384 199 NKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYD-QSKFCGSDLKGKLEVS 277 (1590)
Q Consensus 199 ~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~~~~~~~~l~~~~~~p~~~~~~y~-~~~~~~~~l~~~~~~~ 277 (1590)
..| +++||||+.... ...+...++.. .+......+. +...
T Consensus 162 ~~~-vi~lTAT~~~~~-----------~~~i~~~l~~~---------------~~~~~~~~~~r~nl~------------ 202 (591)
T TIGR01389 162 QVP-RIALTATADAET-----------RQDIRELLRLA---------------DANEFITSFDRPNLR------------ 202 (591)
T ss_pred CCC-EEEEEeCCCHHH-----------HHHHHHHcCCC---------------CCCeEecCCCCCCcE------------
Confidence 344 999999975321 12222222110 0000000000 0000
Q ss_pred hhhhhhhHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHhHHHHHHHHhhhhHHH
Q 000384 278 WSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQC 357 (1590)
Q Consensus 278 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (1590)
|. .
T Consensus 203 ------------------~~-v---------------------------------------------------------- 205 (591)
T TIGR01389 203 ------------------FS-V---------------------------------------------------------- 205 (591)
T ss_pred ------------------EE-E----------------------------------------------------------
Confidence 00 0
Q ss_pred HHHHHHHHHHHhhhcCcchhhhccccCCccccccCCCCCHHHHHHHHHHHhcCCCCCcEEEEEEehHHHHHHHHHHHhhC
Q 000384 358 KYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKV 437 (1590)
Q Consensus 358 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~ 437 (1590)
. ....+...+.+.+.... +.++||||+++..++.+++.|..
T Consensus 206 --------------------------------~---~~~~~~~~l~~~l~~~~---~~~~IIf~~sr~~~e~la~~L~~- 246 (591)
T TIGR01389 206 --------------------------------V---KKNNKQKFLLDYLKKHR---GQSGIIYASSRKKVEELAERLES- 246 (591)
T ss_pred --------------------------------E---eCCCHHHHHHHHHHhcC---CCCEEEEECcHHHHHHHHHHHHh-
Confidence 0 00112333444444322 45799999999999999999987
Q ss_pred CCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCceEEEEcccccccccCCCccEEEEccCCCCHHHHHHHhccccc
Q 000384 438 PFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQ 517 (1590)
Q Consensus 438 ~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fD~p~s~~~yiQr~GRA~R 517 (1590)
.++.+..+||+ |+.++|..++++|++|+++|||||+++++|||+|++++||+||+|.|+.+|+|++|||||
T Consensus 247 ---~g~~~~~~H~~------l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR 317 (591)
T TIGR01389 247 ---QGISALAYHAG------LSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGR 317 (591)
T ss_pred ---CCCCEEEEECC------CCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccC
Confidence 57888999998 999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCce--EEEEecc
Q 000384 518 HNSQ--FILMLER 528 (1590)
Q Consensus 518 ~gs~--~ivlv~~ 528 (1590)
.|.. .+++...
T Consensus 318 ~G~~~~~il~~~~ 330 (591)
T TIGR01389 318 DGLPAEAILLYSP 330 (591)
T ss_pred CCCCceEEEecCH
Confidence 8853 4444433
|
The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. |
| >PRK13767 ATP-dependent helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.4e-30 Score=343.66 Aligned_cols=328 Identities=19% Similarity=0.185 Sum_probs=215.6
Q ss_pred CCCcHHHHHHHHHHh-cCCEEEEeCCCChHHHHHHHHHHHHHHHHHhC---CCCeEEEEEecChhhHHHHHHHHHh----
Q 000384 44 FIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSN---GFKKLIIFLAPTVHLVHQQYDVIRV---- 115 (1590)
Q Consensus 44 ~~pR~yQ~e~le~~~-~~n~Ii~~~TGsGKTliailli~~~l~~~~~~---~~~~~vl~LvPt~~Lv~Qq~~~i~~---- 115 (1590)
-.|+++|.++++.++ ++|+|+++|||||||++|.+++...+...... ..+..+++|+|+++|+.|+++.+..
T Consensus 31 ~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~~l~~ 110 (876)
T PRK13767 31 GTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEEPLTE 110 (876)
T ss_pred CCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHHHHHH
Confidence 359999999999987 58999999999999999999877655422111 2345799999999999999886552
Q ss_pred ---h-------c-CCceEEEecCCCCCccchHHHHHhcCCCcEEEEcHHHHHHHHHhcCc--CccceeEEEEeccccccC
Q 000384 116 ---H-------T-DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL--SLDIVCFIVIDECHHATG 182 (1590)
Q Consensus 116 ---~-------~-~~~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~~~~--~l~~i~lII~DEaH~~~~ 182 (1590)
. + ++++...+|+..... ........++|+|+||+.|..++....+ .+.++++||+||||++.+
T Consensus 111 i~~~~~~~g~~~~~i~v~v~~Gdt~~~~----r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVIDE~H~l~~ 186 (876)
T PRK13767 111 IREIAKERGEELPEIRVAIRTGDTSSYE----KQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWVIVDEIHSLAE 186 (876)
T ss_pred HHHHHHhcCCCcCCeeEEEEcCCCCHHH----HHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEEechhhhcc
Confidence 1 1 567888889875432 1122334789999999999877765432 468899999999999985
Q ss_pred CCc---HHHHHHHHHhcCCCCCcEEEEeccCCccCCCCChhcHHHHHHHHHhhcCCeeEeecchhhhhhcccCcceeeE-
Q 000384 183 NHP---YTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCR- 258 (1590)
Q Consensus 183 ~~~---~~~im~~~~~~~~~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~~~~~~~~l~~~~~~p~~~~~- 258 (1590)
+.. +...+..+.......++++|||||+... ..+...+...... ...++...+.
T Consensus 187 ~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~-------------~~va~~L~~~~~~---------~~~r~~~iv~~ 244 (876)
T PRK13767 187 NKRGVHLSLSLERLEELAGGEFVRIGLSATIEPL-------------EEVAKFLVGYEDD---------GEPRDCEIVDA 244 (876)
T ss_pred CccHHHHHHHHHHHHHhcCCCCeEEEEecccCCH-------------HHHHHHhcCcccc---------CCCCceEEEcc
Confidence 432 2222333322234568899999997531 1222222110000 0000000000
Q ss_pred eccCCCCcccchhhhHHHhhhhhhhhHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 000384 259 FYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLE 338 (1590)
Q Consensus 259 ~y~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~a~~~~~~~~~ 338 (1590)
.+.. .. .+. + ......+..
T Consensus 245 ~~~k-~~---~i~--v------------------~~p~~~l~~------------------------------------- 263 (876)
T PRK13767 245 RFVK-PF---DIK--V------------------ISPVDDLIH------------------------------------- 263 (876)
T ss_pred CCCc-cc---eEE--E------------------eccCccccc-------------------------------------
Confidence 0000 00 000 0 000000000
Q ss_pred HhHhHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcCcchhhhccccCCccccccCCCCCHHHHHHHHHHHhcCCCCCcEEE
Q 000384 339 KVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCI 418 (1590)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~k~I 418 (1590)
.............|.+++.. +.++|
T Consensus 264 --------------------------------------------------~~~~~~~~~l~~~L~~~i~~-----~~~~L 288 (876)
T PRK13767 264 --------------------------------------------------TPAEEISEALYETLHELIKE-----HRTTL 288 (876)
T ss_pred --------------------------------------------------cccchhHHHHHHHHHHHHhc-----CCCEE
Confidence 00000000111222333322 34799
Q ss_pred EEEehHHHHHHHHHHHhhCCC--CCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCceEEEEcccccccccCCCccEE
Q 000384 419 IFVERIIAAKVVERFVKKVPF--LTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYV 496 (1590)
Q Consensus 419 IFv~~r~ta~~L~~~L~~~~~--~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~~vLVaT~vleeGIDip~~~~V 496 (1590)
|||+++..|+.++..|..... ..+..+..+||+ |++++|.+++++|++|++++||||+++++|||+|++++|
T Consensus 289 VF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~------ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~V 362 (876)
T PRK13767 289 IFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSS------LSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLV 362 (876)
T ss_pred EEeCCHHHHHHHHHHHHHhchhhccccceeeeeCC------CCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEE
Confidence 999999999999998876321 123567888888 999999999999999999999999999999999999999
Q ss_pred EEccCCCCHHHHHHHhccccccC
Q 000384 497 IRFDLPKTVSSYIQSRGRARQHN 519 (1590)
Q Consensus 497 I~fD~p~s~~~yiQr~GRA~R~g 519 (1590)
|+||.|.+..+|+||+|||||.+
T Consensus 363 I~~~~P~sv~~ylQRiGRaGR~~ 385 (876)
T PRK13767 363 VLLGSPKSVSRLLQRIGRAGHRL 385 (876)
T ss_pred EEeCCCCCHHHHHHhcccCCCCC
Confidence 99999999999999999999864
|
|
| >COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-30 Score=316.13 Aligned_cols=336 Identities=22% Similarity=0.315 Sum_probs=235.1
Q ss_pred CCCCCCCcHHHHHHHHHHhc-----CCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHH
Q 000384 40 NSINFIPRIYQLKVFEVAKR-----RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIR 114 (1590)
Q Consensus 40 ~~~~~~pR~yQ~e~le~~~~-----~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~ 114 (1590)
....++||+||.++++.+.+ +.+++++|||+|||++++..|..+.. .++||||+.+|+.||++.+.
T Consensus 31 ~~~~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~~---------~~Lvlv~~~~L~~Qw~~~~~ 101 (442)
T COG1061 31 VAFEFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELKR---------STLVLVPTKELLDQWAEALK 101 (442)
T ss_pred cccCCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhcC---------CEEEEECcHHHHHHHHHHHH
Confidence 56788999999999999864 67999999999999999999887632 29999999999999999999
Q ss_pred hhcCCc--eEEEecCCCCCccchHHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCCCcHHHHHHH
Q 000384 115 VHTDFE--VEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKE 192 (1590)
Q Consensus 115 ~~~~~~--v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~~~~~~im~~ 192 (1590)
+.++.. ++.+.|+...- ....|.|+|+|++........+..+.+++||||||||...+ .|..+...
T Consensus 102 ~~~~~~~~~g~~~~~~~~~-----------~~~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~-~~~~~~~~ 169 (442)
T COG1061 102 KFLLLNDEIGIYGGGEKEL-----------EPAKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAP-SYRRILEL 169 (442)
T ss_pred HhcCCccccceecCceecc-----------CCCcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcH-HHHHHHHh
Confidence 988774 55555543211 01479999999997753222334457999999999999765 67777665
Q ss_pred HHhcCCCCCc-EEEEeccCCccCCCCChhcHHHHHHHHHhhcCCeeEeecchhhhh-hcccCcceeeEeccCCCCcccch
Q 000384 193 FYHKSDNKPK-VFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEME-VFVPSAKESCRFYDQSKFCGSDL 270 (1590)
Q Consensus 193 ~~~~~~~~pr-iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~~~~~~~~l~-~~~~~p~~~~~~y~~~~~~~~~l 270 (1590)
+ ..++ +|||||||.+.++ ..+..+...++..++...-.+.+. .++.++....+.......
T Consensus 170 ~-----~~~~~~LGLTATp~R~D~--------~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~----- 231 (442)
T COG1061 170 L-----SAAYPRLGLTATPEREDG--------GRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTED----- 231 (442)
T ss_pred h-----hcccceeeeccCceeecC--------CchhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEeccchH-----
Confidence 5 3345 9999999987652 235667777777788877666655 444443332222211100
Q ss_pred hhhHHHhhhhhhhhHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHhHHHHHHHH
Q 000384 271 KGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIY 350 (1590)
Q Consensus 271 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~ 350 (1590)
.. ..|...... ....+.. .+.
T Consensus 232 ---~~------------------~~~~~~~~~---~~~~~~~-----------~~~------------------------ 252 (442)
T COG1061 232 ---EE------------------REYAKESAR---FRELLRA-----------RGT------------------------ 252 (442)
T ss_pred ---HH------------------HHhhhhhhh---hhhhhhh-----------hhh------------------------
Confidence 00 000000000 0000000 000
Q ss_pred hhhhHHHHHHHHHHHHHHhhhcCcchhhhccccCCccccccCCCCCHHHHHHHHHHHhcCCCCCcEEEEEEehHHHHHHH
Q 000384 351 RQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVV 430 (1590)
Q Consensus 351 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~ta~~L 430 (1590)
.+...... .. ......|+..+..++.... .+.+++||+....++..+
T Consensus 253 --------~~~~~~~~---~~--------------------~~~~~~~~~~~~~~~~~~~--~~~~~lif~~~~~~a~~i 299 (442)
T COG1061 253 --------LRAENEAR---RI--------------------AIASERKIAAVRGLLLKHA--RGDKTLIFASDVEHAYEI 299 (442)
T ss_pred --------hhHHHHHH---HH--------------------hhccHHHHHHHHHHHHHhc--CCCcEEEEeccHHHHHHH
Confidence 00000000 00 0011345566666665443 456899999999999999
Q ss_pred HHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCceEEEEcccccccccCCCccEEEEccCCCCHHHHHH
Q 000384 431 ERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQ 510 (1590)
Q Consensus 431 ~~~L~~~~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fD~p~s~~~yiQ 510 (1590)
+..+.. ++. +..+.|. .+..+|.+++++|+.|++++||++.|+.||+|+|+++++|......|...|+|
T Consensus 300 ~~~~~~----~~~-~~~it~~------t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q 368 (442)
T COG1061 300 AKLFLA----PGI-VEAITGE------TPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQ 368 (442)
T ss_pred HHHhcC----CCc-eEEEECC------CCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHH
Confidence 999987 344 7888888 69999999999999999999999999999999999999999999999999999
Q ss_pred Hhccccc
Q 000384 511 SRGRARQ 517 (1590)
Q Consensus 511 r~GRA~R 517 (1590)
|.||.-|
T Consensus 369 ~lGR~LR 375 (442)
T COG1061 369 RLGRGLR 375 (442)
T ss_pred Hhhhhcc
Confidence 9999998
|
|
| >KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.6e-31 Score=304.30 Aligned_cols=332 Identities=22% Similarity=0.301 Sum_probs=238.0
Q ss_pred CCCCCCCCCcHHHHHHHHHHh-cCCEEEEeCCCChHHHHHHHHHHHHHHHHH-----h--CCCCeEEEEEecChhhHHHH
Q 000384 38 STNSINFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIK-----S--NGFKKLIIFLAPTVHLVHQQ 109 (1590)
Q Consensus 38 ~~~~~~~~pR~yQ~e~le~~~-~~n~Ii~~~TGsGKTliailli~~~l~~~~-----~--~~~~~~vl~LvPt~~Lv~Qq 109 (1590)
........|.|+|+-.++.+. +++.+++++||+|||.+++++|...+.... . .+..+.+++++||++||.|.
T Consensus 89 i~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi 168 (482)
T KOG0335|consen 89 IKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQI 168 (482)
T ss_pred cccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHH
Confidence 344566789999999999887 589999999999999999998777654221 1 11246799999999999999
Q ss_pred HHHHHhhc---CCceEEEecCCCCCccchHHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCCCcH
Q 000384 110 YDVIRVHT---DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPY 186 (1590)
Q Consensus 110 ~~~i~~~~---~~~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~~~~ 186 (1590)
+++.+++. ++++...+|+..... .-+....+++|+|+||+.|.+.+..+.+.|+++.++|+|||+++.+.-.|
T Consensus 169 ~nea~k~~~~s~~~~~~~ygg~~~~~----q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEADrMlD~mgF 244 (482)
T KOG0335|consen 169 YNEARKFSYLSGMKSVVVYGGTDLGA----QLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEADRMLDEMGF 244 (482)
T ss_pred HHHHHhhcccccceeeeeeCCcchhh----hhhhhccCccEEEecCchhhhhhhcceeehhhCcEEEecchHHhhhhccc
Confidence 99999975 577888888854432 22344568999999999999999999999999999999999999875444
Q ss_pred HHHHHHHHhcC----CCCCcEEEEeccCCccCCCCChhcHHHHHHHHHhhcCCeeEeecchhhhhhcccCcceeeEeccC
Q 000384 187 TKIMKEFYHKS----DNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQ 262 (1590)
Q Consensus 187 ~~im~~~~~~~----~~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~~~~~~~~l~~~~~~p~~~~~~y~~ 262 (1590)
.--++...... ....+-+.+|||--.. +..+-..+ +.. ..+++..
T Consensus 245 ~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~------------iq~l~~~f----------------l~~---~yi~laV 293 (482)
T KOG0335|consen 245 EPQIRKIVEQLGMPPKNNRQTLLFSATFPKE------------IQRLAADF----------------LKD---NYIFLAV 293 (482)
T ss_pred cccHHHHhcccCCCCccceeEEEEeccCChh------------hhhhHHHH----------------hhc---cceEEEE
Confidence 33333333222 1345568888883211 11110000 000 0000000
Q ss_pred CCCcccchhhhHHHhhhhhhhhHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHh
Q 000384 263 SKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLK 342 (1590)
Q Consensus 263 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~ 342 (1590)
..+..
T Consensus 294 ~rvg~--------------------------------------------------------------------------- 298 (482)
T KOG0335|consen 294 GRVGS--------------------------------------------------------------------------- 298 (482)
T ss_pred eeecc---------------------------------------------------------------------------
Confidence 00000
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHhhhcCcchhhhccccCCccccccCCCCCHHHHHHHHHHHhcCC------CCCcE
Q 000384 343 AQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGK------STQVL 416 (1590)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~------~~~~k 416 (1590)
.. .+....+..-.-..|...|+++|..... ....+
T Consensus 299 ----------------------------~~-----------~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~ 339 (482)
T KOG0335|consen 299 ----------------------------TS-----------ENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEK 339 (482)
T ss_pred ----------------------------cc-----------ccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccce
Confidence 00 0000000000114466666666653221 11248
Q ss_pred EEEEEehHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCceEEEEcccccccccCCCccEE
Q 000384 417 CIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYV 496 (1590)
Q Consensus 417 ~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~~vLVaT~vleeGIDip~~~~V 496 (1590)
++|||+++..+..|..+|.. .++.+..+||. -++.+|.+.++.|++|.+.+||||+|+++|||||++.+|
T Consensus 340 tlvFvEt~~~~d~l~~~l~~----~~~~~~sIhg~------~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hV 409 (482)
T KOG0335|consen 340 TLVFVETKRGADELAAFLSS----NGYPAKSIHGD------RTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHV 409 (482)
T ss_pred EEEEeeccchhhHHHHHHhc----CCCCceeecch------hhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCcee
Confidence 99999999999999999988 68889999998 689999999999999999999999999999999999999
Q ss_pred EEccCCCCHHHHHHHhccccccCc--eEEEEecc
Q 000384 497 IRFDLPKTVSSYIQSRGRARQHNS--QFILMLER 528 (1590)
Q Consensus 497 I~fD~p~s~~~yiQr~GRA~R~gs--~~ivlv~~ 528 (1590)
|+||+|.+..+|+||+||+||.|. ..+.+++.
T Consensus 410 InyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~ 443 (482)
T KOG0335|consen 410 INYDMPADIDDYVHRIGRTGRVGNGGRATSFFNE 443 (482)
T ss_pred EEeecCcchhhHHHhccccccCCCCceeEEEecc
Confidence 999999999999999999999885 36666664
|
|
| >PRK02362 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-29 Score=333.35 Aligned_cols=324 Identities=19% Similarity=0.276 Sum_probs=223.2
Q ss_pred CCCCcHHHHHHHHHH-h-cCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhh--cC
Q 000384 43 NFIPRIYQLKVFEVA-K-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVH--TD 118 (1590)
Q Consensus 43 ~~~pR~yQ~e~le~~-~-~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~--~~ 118 (1590)
..+|+|+|.++++.. . ++|+++++|||||||++|.++|...+. .+++++|++|+++|+.|+++.++.+ ++
T Consensus 21 ~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~------~~~kal~i~P~raLa~q~~~~~~~~~~~g 94 (737)
T PRK02362 21 IEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIA------RGGKALYIVPLRALASEKFEEFERFEELG 94 (737)
T ss_pred CCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHh------cCCcEEEEeChHHHHHHHHHHHHHhhcCC
Confidence 457999999999984 3 689999999999999999998777654 3456999999999999999999975 37
Q ss_pred CceEEEecCCCCCccchHHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCCCc---HHHHHHHHHh
Q 000384 119 FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHP---YTKIMKEFYH 195 (1590)
Q Consensus 119 ~~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~~~---~~~im~~~~~ 195 (1590)
+++..++|+...+. ..+..++|+|+||+.+..+++++...+.++++||+||+|.+..... +..++..+ .
T Consensus 95 ~~v~~~tGd~~~~~-------~~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~rg~~le~il~rl-~ 166 (737)
T PRK02362 95 VRVGISTGDYDSRD-------EWLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSANRGPTLEVTLAKL-R 166 (737)
T ss_pred CEEEEEeCCcCccc-------cccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCcchHHHHHHHHHH-H
Confidence 89999999865432 1235789999999999998887666678999999999999875322 22233322 2
Q ss_pred cCCCCCcEEEEeccCCccCCCCChhcHHHHHHHHHhhcCCeeEeecchhhhhhcccCcceeeEeccCCCCcccchhhhHH
Q 000384 196 KSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLE 275 (1590)
Q Consensus 196 ~~~~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~~~~~~~~l~~~~~~p~~~~~~y~~~~~~~~~l~~~~~ 275 (1590)
.....++++|||||+.+. .++...+++..+... +.+.+....+++.....
T Consensus 167 ~~~~~~qii~lSATl~n~-------------~~la~wl~~~~~~~~-------~rpv~l~~~v~~~~~~~---------- 216 (737)
T PRK02362 167 RLNPDLQVVALSATIGNA-------------DELADWLDAELVDSE-------WRPIDLREGVFYGGAIH---------- 216 (737)
T ss_pred hcCCCCcEEEEcccCCCH-------------HHHHHHhCCCcccCC-------CCCCCCeeeEecCCeec----------
Confidence 234568999999997532 234444443221111 00111111111110000
Q ss_pred HhhhhhhhhHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHhHHHHHHHHhhhhH
Q 000384 276 VSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSL 355 (1590)
Q Consensus 276 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (1590)
+ ...
T Consensus 217 --------------------~---~~~----------------------------------------------------- 220 (737)
T PRK02362 217 --------------------F---DDS----------------------------------------------------- 220 (737)
T ss_pred --------------------c---ccc-----------------------------------------------------
Confidence 0 000
Q ss_pred HHHHHHHHHHHHHhhhcCcchhhhccccCCccccccCCCCCHHHHHHHHHHHhcCCCCCcEEEEEEehHHHHHHHHHHHh
Q 000384 356 QCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVK 435 (1590)
Q Consensus 356 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~ 435 (1590)
...+. ......++..+.+.+. .+.++||||++|..+..++..|.
T Consensus 221 -------------~~~~~------------------~~~~~~~~~~~~~~~~-----~~~~~LVF~~sr~~~~~~a~~L~ 264 (737)
T PRK02362 221 -------------QREVE------------------VPSKDDTLNLVLDTLE-----EGGQCLVFVSSRRNAEGFAKRAA 264 (737)
T ss_pred -------------cccCC------------------CccchHHHHHHHHHHH-----cCCCeEEEEeCHHHHHHHHHHHH
Confidence 00000 0000122333333332 24579999999999888877765
Q ss_pred hCCC-----------------C---C------------CeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCceEEEEccc
Q 000384 436 KVPF-----------------L---T------------HLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDV 483 (1590)
Q Consensus 436 ~~~~-----------------~---~------------~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~~vLVaT~v 483 (1590)
.... + . ...++++||+ |+..+|..+++.|++|.++|||||++
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHag------l~~~eR~~ve~~Fr~G~i~VLvaT~t 338 (737)
T PRK02362 265 SALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAG------LSREHRELVEDAFRDRLIKVISSTPT 338 (737)
T ss_pred HHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCC------CCHHHHHHHHHHHHcCCCeEEEechh
Confidence 4210 0 0 0235667776 99999999999999999999999999
Q ss_pred ccccccCCCccEEEE----cc-----CCCCHHHHHHHhccccccCc----eEEEEecc
Q 000384 484 IEEGMHVPNCSYVIR----FD-----LPKTVSSYIQSRGRARQHNS----QFILMLER 528 (1590)
Q Consensus 484 leeGIDip~~~~VI~----fD-----~p~s~~~yiQr~GRA~R~gs----~~ivlv~~ 528 (1590)
+++|+|+|+.++||+ || .|.+..+|.||+|||||.|. ..+++...
T Consensus 339 la~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~ 396 (737)
T PRK02362 339 LAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKS 396 (737)
T ss_pred hhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCceEEEEecC
Confidence 999999999999997 87 58899999999999999874 24555543
|
|
| >TIGR00580 mfd transcription-repair coupling factor (mfd) | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.6e-30 Score=331.08 Aligned_cols=304 Identities=19% Similarity=0.283 Sum_probs=214.6
Q ss_pred CCCCCCcHHHHHHHHHHhc-------CCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHH
Q 000384 41 SINFIPRIYQLKVFEVAKR-------RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVI 113 (1590)
Q Consensus 41 ~~~~~pR~yQ~e~le~~~~-------~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i 113 (1590)
...++|+++|.++++.++. +|.++++|||+|||.+|+.++...+. .+..++|||||++|+.|+++.|
T Consensus 447 ~~~f~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~------~g~qvlvLvPT~~LA~Q~~~~f 520 (926)
T TIGR00580 447 SFPFEETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVL------DGKQVAVLVPTTLLAQQHFETF 520 (926)
T ss_pred hCCCCCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHH------hCCeEEEEeCcHHHHHHHHHHH
Confidence 3567899999999999874 58999999999999999988776654 2356999999999999999999
Q ss_pred Hhhc---CCceEEEecCCCCCccchHHHHHhc-CCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCCCcHHHH
Q 000384 114 RVHT---DFEVEEYYGAKGVDEWDSQCWQKEI-NKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKI 189 (1590)
Q Consensus 114 ~~~~---~~~v~~~~G~~~~d~~~~~~w~~~~-~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~~~~~~i 189 (1590)
++.+ ++++..++|..+.... ...+.... .+.+|+|+||..+ +..+.+.++++||+||+|+.... ....
T Consensus 521 ~~~~~~~~i~v~~Lsg~~~~~e~-~~~~~~l~~g~~dIVIGTp~ll-----~~~v~f~~L~llVIDEahrfgv~--~~~~ 592 (926)
T TIGR00580 521 KERFANFPVTIELLSRFRSAKEQ-NEILKELASGKIDILIGTHKLL-----QKDVKFKDLGLLIIDEEQRFGVK--QKEK 592 (926)
T ss_pred HHHhccCCcEEEEEeccccHHHH-HHHHHHHHcCCceEEEchHHHh-----hCCCCcccCCEEEeecccccchh--HHHH
Confidence 9864 5778888887654321 22233222 3589999999644 23567889999999999997431 2222
Q ss_pred HHHHHhcCCCCCcEEEEeccCCccCCCCChhcHHHHHHH-HHhhcCCeeEeecchhhhhhcccCcce--eeEeccCCCCc
Q 000384 190 MKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISE-LESTLDSQVFTIEDKTEMEVFVPSAKE--SCRFYDQSKFC 266 (1590)
Q Consensus 190 m~~~~~~~~~~priLgLTATP~~~~~~~~~~~~~~~i~~-Le~~l~~~i~~~~~~~~l~~~~~~p~~--~~~~y~~~~~~ 266 (1590)
+ ......+++|+|||||.... +.. +....+..+.. ..|.. .+..|
T Consensus 593 L----~~~~~~~~vL~~SATpiprt-----------l~~~l~g~~d~s~I~-----------~~p~~R~~V~t~------ 640 (926)
T TIGR00580 593 L----KELRTSVDVLTLSATPIPRT-----------LHMSMSGIRDLSIIA-----------TPPEDRLPVRTF------ 640 (926)
T ss_pred H----HhcCCCCCEEEEecCCCHHH-----------HHHHHhcCCCcEEEe-----------cCCCCccceEEE------
Confidence 2 23345789999999997431 100 00001100000 00000 00000
Q ss_pred ccchhhhHHHhhhhhhhhHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHhHHHH
Q 000384 267 GSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEE 346 (1590)
Q Consensus 267 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~ 346 (1590)
+....
T Consensus 641 -----------------------------v~~~~---------------------------------------------- 645 (926)
T TIGR00580 641 -----------------------------VMEYD---------------------------------------------- 645 (926)
T ss_pred -----------------------------EEecC----------------------------------------------
Confidence 00000
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHhhhcCcchhhhccccCCccccccCCCCCHHH-HHHHHHHHhcCCCCCcEEEEEEehHH
Q 000384 347 CEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKL-HELLQLFLSFGKSTQVLCIIFVERII 425 (1590)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~-~~L~~lL~~~~~~~~~k~IIFv~~r~ 425 (1590)
...+ ..+.+.+ ..+.+++|||+++.
T Consensus 646 -------------------------------------------------~~~i~~~i~~el-----~~g~qv~if~n~i~ 671 (926)
T TIGR00580 646 -------------------------------------------------PELVREAIRREL-----LRGGQVFYVHNRIE 671 (926)
T ss_pred -------------------------------------------------HHHHHHHHHHHH-----HcCCeEEEEECCcH
Confidence 0000 0011111 12458999999999
Q ss_pred HHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCceEEEEcccccccccCCCccEEEEccCCC-C
Q 000384 426 AAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPK-T 504 (1590)
Q Consensus 426 ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fD~p~-s 504 (1590)
+++.+++.|+.. ++++++..+||. |+.++|.+++++|++|+++|||||+++++|||+|++++||++|.+. +
T Consensus 672 ~~e~l~~~L~~~--~p~~~v~~lHG~------m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a~~~g 743 (926)
T TIGR00580 672 SIEKLATQLREL--VPEARIAIAHGQ------MTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIERADKFG 743 (926)
T ss_pred HHHHHHHHHHHh--CCCCeEEEecCC------CCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEecCCCCC
Confidence 999999999874 246789999999 9999999999999999999999999999999999999999999865 6
Q ss_pred HHHHHHHhccccccCce-EEEEec
Q 000384 505 VSSYIQSRGRARQHNSQ-FILMLE 527 (1590)
Q Consensus 505 ~~~yiQr~GRA~R~gs~-~ivlv~ 527 (1590)
..+|.||+||+||.|.+ +++++.
T Consensus 744 ls~l~Qr~GRvGR~g~~g~aill~ 767 (926)
T TIGR00580 744 LAQLYQLRGRVGRSKKKAYAYLLY 767 (926)
T ss_pred HHHHHHHhcCCCCCCCCeEEEEEE
Confidence 78999999999998864 444443
|
All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families. |
| >KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.9e-30 Score=289.54 Aligned_cols=329 Identities=17% Similarity=0.230 Sum_probs=240.2
Q ss_pred CCCCcHHHHHHHHHHh-cCCEEEEeCCCChHHHHHHHHHHHHHHHHHh-CCCCeEEEEEecChhhHHHHHHHHHhhc---
Q 000384 43 NFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKS-NGFKKLIIFLAPTVHLVHQQYDVIRVHT--- 117 (1590)
Q Consensus 43 ~~~pR~yQ~e~le~~~-~~n~Ii~~~TGsGKTliailli~~~l~~~~~-~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~--- 117 (1590)
.-.+.+.|...+..++ ++++++.+-||+|||+++++++.+++.+.+. ...+-.++|++||++|+.|.+.+.+..+
T Consensus 102 F~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~eak~Ll~~h 181 (543)
T KOG0342|consen 102 FETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEAKELLKYH 181 (543)
T ss_pred ccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHHHHHHHhhC
Confidence 3457889998888876 5899999999999999999998887764432 2344569999999999999999988854
Q ss_pred -CCceEEEecCCCCCccchHHHHHhcCCCcEEEEcHHHHHHHHHhcC-cCccceeEEEEeccccccCCCcHHHHHHHHHh
Q 000384 118 -DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAF-LSLDIVCFIVIDECHHATGNHPYTKIMKEFYH 195 (1590)
Q Consensus 118 -~~~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~~~-~~l~~i~lII~DEaH~~~~~~~~~~im~~~~~ 195 (1590)
++.+..+.|+.+-.. .-++....++|+|+||+.|++.+++.. +....+.++|+|||+|+..- .|..-|.....
T Consensus 182 ~~~~v~~viGG~~~~~----e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEADrlLd~-GF~~di~~Ii~ 256 (543)
T KOG0342|consen 182 ESITVGIVIGGNNFSV----EADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEADRLLDI-GFEEDVEQIIK 256 (543)
T ss_pred CCcceEEEeCCccchH----HHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecchhhhhc-ccHHHHHHHHH
Confidence 567888999875432 223444589999999999999998642 23455689999999999865 66777776666
Q ss_pred cCCCCCcEEEEeccCCccCCCCChhcHHHHHHHHHhhcCCeeEeecchhhhhhcccCcceeeEeccCCCCcccchhhhHH
Q 000384 196 KSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLE 275 (1590)
Q Consensus 196 ~~~~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~~~~~~~~l~~~~~~p~~~~~~y~~~~~~~~~l~~~~~ 275 (1590)
..+...+-+++|||-. ..+++|....- .+ ....+........
T Consensus 257 ~lpk~rqt~LFSAT~~------------~kV~~l~~~~L----------------~~-d~~~v~~~d~~~~--------- 298 (543)
T KOG0342|consen 257 ILPKQRQTLLFSATQP------------SKVKDLARGAL----------------KR-DPVFVNVDDGGER--------- 298 (543)
T ss_pred hccccceeeEeeCCCc------------HHHHHHHHHhh----------------cC-CceEeecCCCCCc---------
Confidence 6677788899999943 12344433210 00 0000000000000
Q ss_pred HhhhhhhhhHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHhHHHHHHHHhhhhH
Q 000384 276 VSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSL 355 (1590)
Q Consensus 276 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (1590)
T Consensus 299 -------------------------------------------------------------------------------- 298 (543)
T KOG0342|consen 299 -------------------------------------------------------------------------------- 298 (543)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHhhhcCcchhhhccccCCccccccCCCCCHHHHHHHHHHHhcCCCCCcEEEEEEehHHHHHHHHHHHh
Q 000384 356 QCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVK 435 (1590)
Q Consensus 356 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~ 435 (1590)
...+.+++ . .+ ......++..|..+|.+... +.++||||.+...+..++++|+
T Consensus 299 -------~The~l~Q----g--yv------------v~~~~~~f~ll~~~LKk~~~--~~KiiVF~sT~~~vk~~~~lL~ 351 (543)
T KOG0342|consen 299 -------ETHERLEQ----G--YV------------VAPSDSRFSLLYTFLKKNIK--RYKIIVFFSTCMSVKFHAELLN 351 (543)
T ss_pred -------chhhcccc----e--EE------------eccccchHHHHHHHHHHhcC--CceEEEEechhhHHHHHHHHHh
Confidence 00000000 0 00 00113345667777766542 2799999999999999999998
Q ss_pred hCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCceEEEEcccccccccCCCccEEEEccCCCCHHHHHHHhccc
Q 000384 436 KVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRA 515 (1590)
Q Consensus 436 ~~~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fD~p~s~~~yiQr~GRA 515 (1590)
. -.+.|..+||. +++..|..+...|++.+.-|||||+|+.+|+|+|+++.||+||+|.++.+||||+||+
T Consensus 352 ~----~dlpv~eiHgk------~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRT 421 (543)
T KOG0342|consen 352 Y----IDLPVLEIHGK------QKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRT 421 (543)
T ss_pred h----cCCchhhhhcC------CcccccchHHHHHhhcccceEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccc
Confidence 6 46788899998 8999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCce--EEEEeccchH
Q 000384 516 RQHNSQ--FILMLERSER 531 (1590)
Q Consensus 516 ~R~gs~--~ivlv~~~E~ 531 (1590)
+|.|.. .++++-+.|.
T Consensus 422 aR~gk~G~alL~l~p~El 439 (543)
T KOG0342|consen 422 AREGKEGKALLLLAPWEL 439 (543)
T ss_pred cccCCCceEEEEeChhHH
Confidence 997754 4555544443
|
|
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-29 Score=326.10 Aligned_cols=312 Identities=20% Similarity=0.273 Sum_probs=213.2
Q ss_pred CCCCCCCCCcHHHHHHHHHHhc-------CCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHH
Q 000384 38 STNSINFIPRIYQLKVFEVAKR-------RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQY 110 (1590)
Q Consensus 38 ~~~~~~~~pR~yQ~e~le~~~~-------~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~ 110 (1590)
......|+|+++|.++++.+.. .|.++.+|||||||++|++++...+. .+..++|++||++|+.|++
T Consensus 254 ~~~~l~f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~------~g~q~lilaPT~~LA~Q~~ 327 (681)
T PRK10917 254 FLASLPFELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE------AGYQAALMAPTEILAEQHY 327 (681)
T ss_pred HHHhCCCCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH------cCCeEEEEeccHHHHHHHH
Confidence 3345688999999999998864 48999999999999999998877654 3456999999999999999
Q ss_pred HHHHhhc---CCceEEEecCCCCCccchHHHHHhc-CCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCCCcH
Q 000384 111 DVIRVHT---DFEVEEYYGAKGVDEWDSQCWQKEI-NKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPY 186 (1590)
Q Consensus 111 ~~i~~~~---~~~v~~~~G~~~~d~~~~~~w~~~~-~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~~~~ 186 (1590)
+.+++++ ++++..++|+..... ....+.... ..++|+|+|++.+.+ .+.+.++++||+||+|+.... .
T Consensus 328 ~~l~~l~~~~~i~v~ll~G~~~~~~-r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvVIDE~Hrfg~~-q- 399 (681)
T PRK10917 328 ENLKKLLEPLGIRVALLTGSLKGKE-RREILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVIIDEQHRFGVE-Q- 399 (681)
T ss_pred HHHHHHHhhcCcEEEEEcCCCCHHH-HHHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceEEEechhhhhHH-H-
Confidence 9999875 689999999876443 223333333 369999999987743 345788999999999997432 1
Q ss_pred HHHHHHHHhcCCCCCcEEEEeccCCccCCCCChhcHHHHHHHHHhhcCCeeEeecchhhhhhcccCcceeeEeccCCCCc
Q 000384 187 TKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFC 266 (1590)
Q Consensus 187 ~~im~~~~~~~~~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~~~~~~~~l~~~~~~p~~~~~~y~~~~~~ 266 (1590)
...+ ......|++|+|||||.... + .+...-+-.+....... ....|... .+.
T Consensus 400 r~~l----~~~~~~~~iL~~SATp~prt-----------l-~~~~~g~~~~s~i~~~p----~~r~~i~~--~~~----- 452 (681)
T PRK10917 400 RLAL----REKGENPHVLVMTATPIPRT-----------L-AMTAYGDLDVSVIDELP----PGRKPITT--VVI----- 452 (681)
T ss_pred HHHH----HhcCCCCCEEEEeCCCCHHH-----------H-HHHHcCCCceEEEecCC----CCCCCcEE--EEe-----
Confidence 1122 12234689999999997421 0 01000000000000000 00000000 000
Q ss_pred ccchhhhHHHhhhhhhhhHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHhHHHH
Q 000384 267 GSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEE 346 (1590)
Q Consensus 267 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~ 346 (1590)
.
T Consensus 453 ---------------------------------~---------------------------------------------- 453 (681)
T PRK10917 453 ---------------------------------P---------------------------------------------- 453 (681)
T ss_pred ---------------------------------C----------------------------------------------
Confidence 0
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHhhhcCcchhhhccccCCccccccCCCCCHHHHHHHHHHHhcCCCCCcEEEEEEehH--
Q 000384 347 CEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERI-- 424 (1590)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r-- 424 (1590)
..+...+.+.+.... ..+.+++|||+.+
T Consensus 454 -------------------------------------------------~~~~~~~~~~i~~~~-~~g~q~~v~~~~ie~ 483 (681)
T PRK10917 454 -------------------------------------------------DSRRDEVYERIREEI-AKGRQAYVVCPLIEE 483 (681)
T ss_pred -------------------------------------------------cccHHHHHHHHHHHH-HcCCcEEEEEccccc
Confidence 000001111111100 2345799999853
Q ss_pred ------HHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCceEEEEcccccccccCCCccEEEE
Q 000384 425 ------IAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIR 498 (1590)
Q Consensus 425 ------~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~ 498 (1590)
..+..+++.|... +.++.+..+||+ |+.++|.+++++|++|+++|||||+++++|||+|++++||+
T Consensus 484 s~~l~~~~~~~~~~~L~~~--~~~~~v~~lHG~------m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi 555 (681)
T PRK10917 484 SEKLDLQSAEETYEELQEA--FPELRVGLLHGR------MKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMVI 555 (681)
T ss_pred ccchhHHHHHHHHHHHHHH--CCCCcEEEEeCC------CCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEEE
Confidence 3455566666653 234789999999 99999999999999999999999999999999999999999
Q ss_pred ccCCC-CHHHHHHHhccccccCce-EEEEec
Q 000384 499 FDLPK-TVSSYIQSRGRARQHNSQ-FILMLE 527 (1590)
Q Consensus 499 fD~p~-s~~~yiQr~GRA~R~gs~-~ivlv~ 527 (1590)
||.|. ...++.|++||+||.|.. +++++.
T Consensus 556 ~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~ 586 (681)
T PRK10917 556 ENAERFGLAQLHQLRGRVGRGAAQSYCVLLY 586 (681)
T ss_pred eCCCCCCHHHHHHHhhcccCCCCceEEEEEE
Confidence 99987 578899999999998853 444443
|
|
| >PRK00102 rnc ribonuclease III; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-30 Score=293.75 Aligned_cols=212 Identities=28% Similarity=0.397 Sum_probs=175.9
Q ss_pred HHHHHHHhcccCCCCCChHHHHHhhcCCCCC----CCCCcchhhhhhhhhHhHHHHHHHHhhCCCCCcchhHHHHHHhhc
Q 000384 1028 SQLREEINCHSRNFHIPSSLILEALTTLGCC----ESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVC 1103 (1590)
Q Consensus 1028 ~~l~~~l~~~~~~~~~~~~lll~AlT~~s~~----~~~n~ErLE~LGDs~Lk~~~s~~l~~~~p~~~eg~ls~~r~~~v~ 1103 (1590)
..|+++|+|.|.| +.++++||||+|+. ...||||||||||++|+++++.+||.+||+.++|.|+.+|+.+||
T Consensus 6 ~~l~~~lg~~f~~----~~ll~~Alth~S~~~~~~~~~~nerLefLGDavl~~~v~~~l~~~~p~~~~g~l~~~~~~lvs 81 (229)
T PRK00102 6 EELQKKLGYTFKD----PELLIQALTHRSYANENKGLKHNERLEFLGDAVLELVVSEYLFKRFPDLDEGDLSKLRAALVR 81 (229)
T ss_pred HHHHHHhCCCCCC----HHHHHHHhCccchhccCCCcccchhHHHHHHHHHHHHHHHHHHHHCCCCChhHHHHHHHHHhC
Confidence 4578899999988 89999999999984 356999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhCCCccccccccCCCCcccCCCccCCCCCCCCCCCCcccccCCCcccccccceecCCcCCCCccccccchh
Q 000384 1104 NSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTI 1183 (1590)
Q Consensus 1104 N~~L~~~a~~~gl~~~i~~~~f~~~~w~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~i 1183 (1590)
|.+|+.+|.++||+.||+..+ +. .
T Consensus 82 n~~la~~a~~lgl~~~i~~~~---------~~----------------------------------------~------- 105 (229)
T PRK00102 82 EESLAEIARELGLGEYLLLGK---------GE----------------------------------------E------- 105 (229)
T ss_pred HHHHHHHHHHCCcHHHHccCc---------HH----------------------------------------H-------
Confidence 999999999999999998542 00 0
Q ss_pred hhHHHHHHHHhhhccChhHHHHHHHHhCCCccccchhhhhhhhcccccccCCChHHHHHHHHHhCCccCCHHHHHHHHcc
Q 000384 1184 ADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITH 1263 (1590)
Q Consensus 1184 AD~vEAliGA~~~~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~lgy~F~~~~LL~~AlTH 1263 (1590)
T Consensus 106 -------------------------------------------------------------------------------- 105 (229)
T PRK00102 106 -------------------------------------------------------------------------------- 105 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCcchHHHHHHhcccChHHHHHHHHHHHcCCCCCCCCCCCCCCCCCchhhhHHHHHHhceeecCCCChHHHHHHHH
Q 000384 1264 ASVQEFYCYQNLYKHLQHCSTLLLSQITEYVKSFPKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFK 1343 (1590)
Q Consensus 1264 ~S~~~~~~ye~L~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~l~D~~Ea~iGAi~lDsg~~~~~~~~~~~ 1343 (1590)
. ......+|+++|+|||+|||||+|+|+ +.+++|+.
T Consensus 106 -------------------------------~-----------~~~~~~~k~~ad~~EA~iGAiyld~g~--~~~~~~i~ 141 (229)
T PRK00102 106 -------------------------------K-----------SGGRRRPSILADAFEALIGAIYLDQGL--EAARKFIL 141 (229)
T ss_pred -------------------------------H-----------cCCCCCccHHHHHHHHHHHHHHHhCCH--HHHHHHHH
Confidence 0 000124677888888888888888876 67788877
Q ss_pred hhhccccCCC---CCCCChhhHHHHHHHhcCCcceee-e-eeeCce--EEEEEEEEEcCeEEEEEEEeCCHHHHHHHHHH
Q 000384 1344 PILSPIVTPD---KLELPPLRELIELCDSLGYFVKEN-C-TLKGEM--VHAELRLQLKDVLLVGEGQERSRKAAKGKAAS 1416 (1590)
Q Consensus 1344 ~~l~~~i~~~---~~~~~P~~~L~e~~~~~~~~~~~~-~-~~~g~~--~~~~~~v~~~g~~~~~~g~g~skk~Ak~~AA~ 1416 (1590)
.++.|.+... ....||++.|+|+|++.+...+.+ + ...|+. +.|+|.|+++|. .++.|.|.|||+||..||+
T Consensus 142 ~~~~~~l~~~~~~~~~~~pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~i~~~-~~~~g~g~skk~Ae~~AA~ 220 (229)
T PRK00102 142 RLFEPRIEEIDLGDLVKDYKTRLQELLQGRGLPLPEYELVKEEGPAHDKEFTVEVTVNGK-ELGEGTGSSKKEAEQAAAK 220 (229)
T ss_pred HHHHHHHHhhccccccCCHHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEECCE-EEEEeeeCCHHHHHHHHHH
Confidence 7777766542 345799999999999988776533 3 334543 689999999986 8999999999999999999
Q ss_pred HHHHHhhh
Q 000384 1417 QLLKKLEV 1424 (1590)
Q Consensus 1417 ~AL~~L~~ 1424 (1590)
+||+.|+.
T Consensus 221 ~Al~~l~~ 228 (229)
T PRK00102 221 QALKKLKE 228 (229)
T ss_pred HHHHHHhh
Confidence 99999875
|
|
| >TIGR00643 recG ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.6e-29 Score=320.20 Aligned_cols=312 Identities=22% Similarity=0.311 Sum_probs=212.8
Q ss_pred CCCCCCcHHHHHHHHHHhc-------CCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHH
Q 000384 41 SINFIPRIYQLKVFEVAKR-------RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVI 113 (1590)
Q Consensus 41 ~~~~~pR~yQ~e~le~~~~-------~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i 113 (1590)
...|+|+++|.++++.+.. .|.++.+|||||||++|++++...+. .+..++|++||++|+.|+++.+
T Consensus 231 ~lpf~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~------~g~qvlilaPT~~LA~Q~~~~~ 304 (630)
T TIGR00643 231 SLPFKLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE------AGYQVALMAPTEILAEQHYNSL 304 (630)
T ss_pred hCCCCCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHH------cCCcEEEECCHHHHHHHHHHHH
Confidence 4678999999999998864 36899999999999999988777655 3456999999999999999999
Q ss_pred Hhhc---CCceEEEecCCCCCccchHHHHHhc-CCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCCCcHHHH
Q 000384 114 RVHT---DFEVEEYYGAKGVDEWDSQCWQKEI-NKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKI 189 (1590)
Q Consensus 114 ~~~~---~~~v~~~~G~~~~d~~~~~~w~~~~-~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~~~~~~i 189 (1590)
++++ ++++..++|+..... ....|.... .+.+|+|+|+..+.+ .+.+.++++||+||+|+.... ....+
T Consensus 305 ~~l~~~~gi~v~lltg~~~~~~-r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVIDEaH~fg~~-qr~~l 377 (630)
T TIGR00643 305 RNLLAPLGIEVALLTGSLKGKR-RKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVIIDEQHRFGVE-QRKKL 377 (630)
T ss_pred HHHhcccCcEEEEEecCCCHHH-HHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEEechhhccHH-HHHHH
Confidence 9875 689999999876543 222343333 468999999998753 355788999999999997432 22222
Q ss_pred HHHHHhcCCCCCcEEEEeccCCccCCCCChhcHHHHHHHHHhhcCCeeEeecchhhhhhcccCcceeeEeccCCCCcccc
Q 000384 190 MKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSD 269 (1590)
Q Consensus 190 m~~~~~~~~~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~~~~~~~~l~~~~~~p~~~~~~y~~~~~~~~~ 269 (1590)
.... .....|++|+|||||.... +...+.... +...+ ...+.....+..+
T Consensus 378 ~~~~--~~~~~~~~l~~SATp~prt--------------l~l~~~~~l----~~~~i-~~~p~~r~~i~~~--------- 427 (630)
T TIGR00643 378 REKG--QGGFTPHVLVMSATPIPRT--------------LALTVYGDL----DTSII-DELPPGRKPITTV--------- 427 (630)
T ss_pred HHhc--ccCCCCCEEEEeCCCCcHH--------------HHHHhcCCc----ceeee-ccCCCCCCceEEE---------
Confidence 2211 0012689999999997431 000000000 00000 0000000000000
Q ss_pred hhhhHHHhhhhhhhhHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHhHHHHHHH
Q 000384 270 LKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEI 349 (1590)
Q Consensus 270 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~ 349 (1590)
T Consensus 428 -------------------------------------------------------------------------------- 427 (630)
T TIGR00643 428 -------------------------------------------------------------------------------- 427 (630)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhhhHHHHHHHHHHHHHHhhhcCcchhhhccccCCccccccCCCCCHHHHHHHHHHHhcCCCCCcEEEEEEehH-----
Q 000384 350 YRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERI----- 424 (1590)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r----- 424 (1590)
+ . ..+.+ ..+.+.+.... ..+.+++|||+..
T Consensus 428 -----------------------------~----------~---~~~~~-~~~~~~i~~~l-~~g~q~~v~~~~i~~s~~ 463 (630)
T TIGR00643 428 -----------------------------L----------I---KHDEK-DIVYEFIEEEI-AKGRQAYVVYPLIEESEK 463 (630)
T ss_pred -----------------------------E----------e---CcchH-HHHHHHHHHHH-HhCCcEEEEEcccccccc
Confidence 0 0 00000 11122221110 2345799999865
Q ss_pred ---HHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCceEEEEcccccccccCCCccEEEEccC
Q 000384 425 ---IAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDL 501 (1590)
Q Consensus 425 ---~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fD~ 501 (1590)
..+..+++.|... +.++.+..+||+ |+.++|.+++++|++|+++|||||+++++|||+|++++||+||.
T Consensus 464 ~~~~~a~~~~~~L~~~--~~~~~v~~lHG~------m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi~~~ 535 (630)
T TIGR00643 464 LDLKAAEALYERLKKA--FPKYNVGLLHGR------MKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVIEDA 535 (630)
T ss_pred chHHHHHHHHHHHHhh--CCCCcEEEEeCC------CCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEEeCC
Confidence 4566667777653 256789999999 99999999999999999999999999999999999999999999
Q ss_pred CC-CHHHHHHHhccccccCce-EEEEec
Q 000384 502 PK-TVSSYIQSRGRARQHNSQ-FILMLE 527 (1590)
Q Consensus 502 p~-s~~~yiQr~GRA~R~gs~-~ivlv~ 527 (1590)
|. +..+|.|++||+||.|.. +++++.
T Consensus 536 ~r~gls~lhQ~~GRvGR~g~~g~~il~~ 563 (630)
T TIGR00643 536 ERFGLSQLHQLRGRVGRGDHQSYCLLVY 563 (630)
T ss_pred CcCCHHHHHHHhhhcccCCCCcEEEEEE
Confidence 86 788999999999998853 444443
|
|
| >PRK00254 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-28 Score=320.32 Aligned_cols=323 Identities=18% Similarity=0.233 Sum_probs=215.2
Q ss_pred CCCCCcHHHHHHHHHH-h-cCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhh--c
Q 000384 42 INFIPRIYQLKVFEVA-K-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVH--T 117 (1590)
Q Consensus 42 ~~~~pR~yQ~e~le~~-~-~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~--~ 117 (1590)
....|+++|.++++.. . ++|+|+++|||||||++|.++|...+. ..+.+++||+|+++|+.|+++.++.+ +
T Consensus 20 g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~-----~~~~~~l~l~P~~aLa~q~~~~~~~~~~~ 94 (720)
T PRK00254 20 GIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLL-----REGGKAVYLVPLKALAEEKYREFKDWEKL 94 (720)
T ss_pred CCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHH-----hcCCeEEEEeChHHHHHHHHHHHHHHhhc
Confidence 3457999999999863 3 699999999999999999887765543 13457999999999999999999864 4
Q ss_pred CCceEEEecCCCCCccchHHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCCCcHHHHHHHHHhcC
Q 000384 118 DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS 197 (1590)
Q Consensus 118 ~~~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~~~~~~im~~~~~~~ 197 (1590)
++++..++|+...+ ..| ..+++|+|+||+.+..+++++...++++++||+||+|.+..... ...+.......
T Consensus 95 g~~v~~~~Gd~~~~----~~~---~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~~r-g~~le~il~~l 166 (720)
T PRK00254 95 GLRVAMTTGDYDST----DEW---LGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSYDR-GATLEMILTHM 166 (720)
T ss_pred CCEEEEEeCCCCCc----hhh---hccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCccc-hHHHHHHHHhc
Confidence 78999999986543 123 35789999999999998887666689999999999999865422 22233333334
Q ss_pred CCCCcEEEEeccCCccCCCCChhcHHHHHHHHHhhcCCeeEeecchhhhhhcccCcceeeEeccCCCCcccchhhhHHHh
Q 000384 198 DNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVS 277 (1590)
Q Consensus 198 ~~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~~~~~~~~l~~~~~~p~~~~~~y~~~~~~~~~l~~~~~~~ 277 (1590)
...++++|||||+.+. .++...++...+.... .+.|....+.+.....
T Consensus 167 ~~~~qiI~lSATl~n~-------------~~la~wl~~~~~~~~~-------rpv~l~~~~~~~~~~~------------ 214 (720)
T PRK00254 167 LGRAQILGLSATVGNA-------------EELAEWLNAELVVSDW-------RPVKLRKGVFYQGFLF------------ 214 (720)
T ss_pred CcCCcEEEEEccCCCH-------------HHHHHHhCCccccCCC-------CCCcceeeEecCCeee------------
Confidence 5679999999997532 2333444432211110 0111000011100000
Q ss_pred hhhhhhhHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHhHHHHHHHHhhhhHHH
Q 000384 278 WSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQC 357 (1590)
Q Consensus 278 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (1590)
+.. .... .
T Consensus 215 ------------------~~~--~~~~----~------------------------------------------------ 222 (720)
T PRK00254 215 ------------------WED--GKIE----R------------------------------------------------ 222 (720)
T ss_pred ------------------ccC--cchh----c------------------------------------------------
Confidence 000 0000 0
Q ss_pred HHHHHHHHHHHhhhcCcchhhhccccCCccccccCCCCCHHHHHHHHHHHhcCCCCCcEEEEEEehHHHHHHHHHHHhhC
Q 000384 358 KYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKV 437 (1590)
Q Consensus 358 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~ 437 (1590)
........+.+.+. .+.++||||++|..+..++..|...
T Consensus 223 ------------------------------------~~~~~~~~~~~~i~-----~~~~vLVF~~sr~~~~~~a~~l~~~ 261 (720)
T PRK00254 223 ------------------------------------FPNSWESLVYDAVK-----KGKGALVFVNTRRSAEKEALELAKK 261 (720)
T ss_pred ------------------------------------chHHHHHHHHHHHH-----hCCCEEEEEcChHHHHHHHHHHHHH
Confidence 00000111122222 2347999999999887766555321
Q ss_pred -----------------------CCC------CCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCceEEEEcccccccc
Q 000384 438 -----------------------PFL------THLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGM 488 (1590)
Q Consensus 438 -----------------------~~~------~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~~vLVaT~vleeGI 488 (1590)
+.. -...+.++||+ |++++|..+++.|++|.++|||||+++++|+
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHag------l~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gv 335 (720)
T PRK00254 262 IKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAG------LGRTERVLIEDAFREGLIKVITATPTLSAGI 335 (720)
T ss_pred HHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCC------CCHHHHHHHHHHHHCCCCeEEEeCcHHhhhc
Confidence 000 01236777777 9999999999999999999999999999999
Q ss_pred cCCCccEEEE-------ccCCC-CHHHHHHHhccccccC----ceEEEEecc
Q 000384 489 HVPNCSYVIR-------FDLPK-TVSSYIQSRGRARQHN----SQFILMLER 528 (1590)
Q Consensus 489 Dip~~~~VI~-------fD~p~-s~~~yiQr~GRA~R~g----s~~ivlv~~ 528 (1590)
|+|+.++||+ |+.|. +..+|+||+|||||.| +..++++..
T Consensus 336 nipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~ 387 (720)
T PRK00254 336 NLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATT 387 (720)
T ss_pred CCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEecC
Confidence 9999999994 55444 5679999999999976 235555543
|
|
| >PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-28 Score=316.23 Aligned_cols=413 Identities=18% Similarity=0.186 Sum_probs=235.6
Q ss_pred CCCCcHHHHHHHHHHh-----cCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhhc
Q 000384 43 NFIPRIYQLKVFEVAK-----RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT 117 (1590)
Q Consensus 43 ~~~pR~yQ~e~le~~~-----~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~ 117 (1590)
..++|+||.+++.++. +.++|+++++|+|||++++.++..+.. ..+..+.+|||||. +|+.||.++|++++
T Consensus 167 ~~~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~---~~~~~gp~LIVvP~-SlL~nW~~Ei~kw~ 242 (1033)
T PLN03142 167 KGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHE---YRGITGPHMVVAPK-STLGNWMNEIRRFC 242 (1033)
T ss_pred ccchHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHH---hcCCCCCEEEEeCh-HHHHHHHHHHHHHC
Confidence 3579999999999875 478999999999999999998877644 22334458999997 77799999999998
Q ss_pred C-CceEEEecCCCCCccchHHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCCCc-HHHHHHHHHh
Q 000384 118 D-FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHP-YTKIMKEFYH 195 (1590)
Q Consensus 118 ~-~~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~~~-~~~im~~~~~ 195 (1590)
+ +++..++|........... ......++|+|+|++++.+... .+.-..|++||+||||+++.... ..+.++.+
T Consensus 243 p~l~v~~~~G~~~eR~~~~~~-~~~~~~~dVvITSYe~l~~e~~--~L~k~~W~~VIvDEAHrIKN~~Sklskalr~L-- 317 (1033)
T PLN03142 243 PVLRAVKFHGNPEERAHQREE-LLVAGKFDVCVTSFEMAIKEKT--ALKRFSWRYIIIDEAHRIKNENSLLSKTMRLF-- 317 (1033)
T ss_pred CCCceEEEeCCHHHHHHHHHH-HhcccCCCcceecHHHHHHHHH--HhccCCCCEEEEcCccccCCHHHHHHHHHHHh--
Confidence 5 6788888754211100000 0112468999999999976432 23345689999999999976322 33344433
Q ss_pred cCCCCCcEEEEeccCCccCCCCChhcHHHHHHHHHhhcCCeeEeecchhhhhhcccCcceeeEeccCCCCcccchhhhHH
Q 000384 196 KSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLE 275 (1590)
Q Consensus 196 ~~~~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~~~~~~~~l~~~~~~p~~~~~~y~~~~~~~~~l~~~~~ 275 (1590)
...++|+|||||+.|+ ...+..|-..+...++. +...+..+....... . .......+...+.
T Consensus 318 ---~a~~RLLLTGTPlqNn--------l~ELwsLL~FL~P~~f~--s~~~F~~~f~~~~~~----~-~~e~i~~L~~~L~ 379 (1033)
T PLN03142 318 ---STNYRLLITGTPLQNN--------LHELWALLNFLLPEIFS--SAETFDEWFQISGEN----D-QQEVVQQLHKVLR 379 (1033)
T ss_pred ---hcCcEEEEecCCCCCC--------HHHHHHHHhcCCCCcCC--CHHHHHHHHcccccc----c-hHHHHHHHHHHhh
Confidence 3567899999999886 12222222223222211 111111111110000 0 0000000000010
Q ss_pred Hhh-hhhhhhHH-HHHhhh-hhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHhHHHHHHHHhh
Q 000384 276 VSW-SKFDASLS-KLQGSQ-LNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQ 352 (1590)
Q Consensus 276 ~~~-~~~~~~~~-~l~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~ 352 (1590)
... ......+. .+.... ...+..+...-+.+...+.. .....+...+. ... .+ .....
T Consensus 380 pf~LRR~KsdV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~---k~~~~l~~g~~---~~~---Ll----------nilmq 440 (1033)
T PLN03142 380 PFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQ---KDLDVVNAGGE---RKR---LL----------NIAMQ 440 (1033)
T ss_pred HHHhhhhHHHHhhhCCCceeEEEeeCCCHHHHHHHHHHHH---HHHHHHhcccc---HHH---HH----------HHHHH
Confidence 000 00000000 000000 00001111111111000000 00000000000 000 00 00000
Q ss_pred hhHHHHHHHHHHHHHHhhhcCcchhhhccccCCccccccCCCCCHHHHHHHHHHHhcCCCCCcEEEEEEehHHHHHHHHH
Q 000384 353 SSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVER 432 (1590)
Q Consensus 353 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~ta~~L~~ 432 (1590)
....|. .. ..+....+. .........-..|.|+..|.++|.... ..+.++|||++...+.+.|.+
T Consensus 441 LRk~cn----HP-~L~~~~ep~---------~~~~~~e~lie~SgKl~lLdkLL~~Lk-~~g~KVLIFSQft~~LdiLed 505 (1033)
T PLN03142 441 LRKCCN----HP-YLFQGAEPG---------PPYTTGEHLVENSGKMVLLDKLLPKLK-ERDSRVLIFSQMTRLLDILED 505 (1033)
T ss_pred HHHHhC----CH-Hhhhccccc---------CcccchhHHhhhhhHHHHHHHHHHHHH-hcCCeEEeehhHHHHHHHHHH
Confidence 000000 00 000000000 000000001123789999999887765 457899999999999999999
Q ss_pred HHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCC---CceEEEEcccccccccCCCccEEEEccCCCCHHHHH
Q 000384 433 FVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGG---KVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYI 509 (1590)
Q Consensus 433 ~L~~~~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g---~~~vLVaT~vleeGIDip~~~~VI~fD~p~s~~~yi 509 (1590)
+|.. .++.+..++|. ++..+|..++++|+.. ...+|++|.++++|||++.++.||+||++||+....
T Consensus 506 ~L~~----~g~~y~rIdGs------ts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~ 575 (1033)
T PLN03142 506 YLMY----RGYQYCRIDGN------TGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVILYDSDWNPQVDL 575 (1033)
T ss_pred HHHH----cCCcEEEECCC------CCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEEEeCCCCChHHHH
Confidence 9976 57788889998 7999999999999753 356899999999999999999999999999999999
Q ss_pred HHhccccccCceEEEEe
Q 000384 510 QSRGRARQHNSQFILML 526 (1590)
Q Consensus 510 Qr~GRA~R~gs~~ivlv 526 (1590)
|++|||+|.|++--|.|
T Consensus 576 QAidRaHRIGQkk~V~V 592 (1033)
T PLN03142 576 QAQDRAHRIGQKKEVQV 592 (1033)
T ss_pred HHHHHhhhcCCCceEEE
Confidence 99999999999744443
|
|
| >PRK01172 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-28 Score=318.34 Aligned_cols=310 Identities=18% Similarity=0.201 Sum_probs=211.2
Q ss_pred CCCCCcHHHHHHHHHHh-cCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhh--cC
Q 000384 42 INFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVH--TD 118 (1590)
Q Consensus 42 ~~~~pR~yQ~e~le~~~-~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~--~~ 118 (1590)
..++++++|.++++.+. ++|+++++|||||||+++.++|.+.+. .+++++|++|+++|+.|++++++++ .|
T Consensus 19 ~~~~l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~------~~~k~v~i~P~raLa~q~~~~~~~l~~~g 92 (674)
T PRK01172 19 NDFELYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFL------AGLKSIYIVPLRSLAMEKYEELSRLRSLG 92 (674)
T ss_pred CCCCCCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHH------hCCcEEEEechHHHHHHHHHHHHHHhhcC
Confidence 45789999999999987 489999999999999999998877654 2346899999999999999999864 47
Q ss_pred CceEEEecCCCCCccchHHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCCC---cHHHHHHHHHh
Q 000384 119 FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNH---PYTKIMKEFYH 195 (1590)
Q Consensus 119 ~~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~~---~~~~im~~~~~ 195 (1590)
.++...+|+...+. ..+..++|+|+||+.+..++.++...+.++++||+||||++.+.. .+..++.. ..
T Consensus 93 ~~v~~~~G~~~~~~-------~~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~-~~ 164 (674)
T PRK01172 93 MRVKISIGDYDDPP-------DFIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRGPTLETVLSS-AR 164 (674)
T ss_pred CeEEEEeCCCCCCh-------hhhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCccHHHHHHHHH-HH
Confidence 78888888764321 123578999999999998888776668899999999999986432 12333322 22
Q ss_pred cCCCCCcEEEEeccCCccCCCCChhcHHHHHHHHHhhcCCeeEeecchhhhhhcccCcceeeEeccCCCCcccchhhhHH
Q 000384 196 KSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLE 275 (1590)
Q Consensus 196 ~~~~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~~~~~~~~l~~~~~~p~~~~~~y~~~~~~~~~l~~~~~ 275 (1590)
......+++|||||+.+. .++...+++..+... +.+.|....+.|....+.
T Consensus 165 ~~~~~~riI~lSATl~n~-------------~~la~wl~~~~~~~~-------~r~vpl~~~i~~~~~~~~--------- 215 (674)
T PRK01172 165 YVNPDARILALSATVSNA-------------NELAQWLNASLIKSN-------FRPVPLKLGILYRKRLIL--------- 215 (674)
T ss_pred hcCcCCcEEEEeCccCCH-------------HHHHHHhCCCccCCC-------CCCCCeEEEEEecCeeee---------
Confidence 234568999999997532 233444443221110 111111111111100000
Q ss_pred HhhhhhhhhHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHhHHHHHHHHhhhhH
Q 000384 276 VSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSL 355 (1590)
Q Consensus 276 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (1590)
....
T Consensus 216 ----------------------~~~~------------------------------------------------------ 219 (674)
T PRK01172 216 ----------------------DGYE------------------------------------------------------ 219 (674)
T ss_pred ----------------------cccc------------------------------------------------------
Confidence 0000
Q ss_pred HHHHHHHHHHHHHhhhcCcchhhhccccCCccccccCCCCCHHHHHHHHHHHhcCCCCCcEEEEEEehHHHHHHHHHHHh
Q 000384 356 QCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVK 435 (1590)
Q Consensus 356 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~ 435 (1590)
.. ... +..++.... ..+.++||||+++..+..++..|.
T Consensus 220 ------------------------------------~~--~~~---~~~~i~~~~-~~~~~vLVF~~sr~~~~~~a~~L~ 257 (674)
T PRK01172 220 ------------------------------------RS--QVD---INSLIKETV-NDGGQVLVFVSSRKNAEDYAEMLI 257 (674)
T ss_pred ------------------------------------cc--ccc---HHHHHHHHH-hCCCcEEEEeccHHHHHHHHHHHH
Confidence 00 000 001111100 124579999999999998888776
Q ss_pred hCC-CCCC--------------------eeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCceEEEEcccccccccCCCcc
Q 000384 436 KVP-FLTH--------------------LTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCS 494 (1590)
Q Consensus 436 ~~~-~~~~--------------------~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~~vLVaT~vleeGIDip~~~ 494 (1590)
... .... ..+.++||+ |+.++|..+++.|++|.++|||||+++++|+|+|+..
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hag------l~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~ 331 (674)
T PRK01172 258 QHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAG------LSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARL 331 (674)
T ss_pred HhhhhcccccccccccccccHHHHHHHhcCEEEecCC------CCHHHHHHHHHHHHcCCCeEEEecchhhccCCCcceE
Confidence 531 1001 125566776 9999999999999999999999999999999999865
Q ss_pred EEEEcc---------CCCCHHHHHHHhccccccC
Q 000384 495 YVIRFD---------LPKTVSSYIQSRGRARQHN 519 (1590)
Q Consensus 495 ~VI~fD---------~p~s~~~yiQr~GRA~R~g 519 (1590)
+|| +| .|.+..+|.||+|||||.|
T Consensus 332 VII-~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g 364 (674)
T PRK01172 332 VIV-RDITRYGNGGIRYLSNMEIKQMIGRAGRPG 364 (674)
T ss_pred EEE-cCceEeCCCCceeCCHHHHHHHhhcCCCCC
Confidence 554 33 2568889999999999987
|
|
| >KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-28 Score=280.01 Aligned_cols=358 Identities=20% Similarity=0.286 Sum_probs=228.1
Q ss_pred CCCCcHHHHHHHHHHh-cCCEEEEeCCCChHHHHHHHHHHHHHHHHHh---CCCCeEEEEEecChhhHHHHHHHHHhhcC
Q 000384 43 NFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKS---NGFKKLIIFLAPTVHLVHQQYDVIRVHTD 118 (1590)
Q Consensus 43 ~~~pR~yQ~e~le~~~-~~n~Ii~~~TGsGKTliailli~~~l~~~~~---~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~~ 118 (1590)
.-.|...|..+++.++ +++++|-+.||||||++++++|-+.++.... ...+.-+||||||++||.|.++.+.+...
T Consensus 157 i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~ 236 (708)
T KOG0348|consen 157 ISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQKLLK 236 (708)
T ss_pred cCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHHHHHHhc
Confidence 3468899999999988 5999999999999999999999888764321 34456799999999999999999999763
Q ss_pred ----CceEEEecCCCCCccchHHHHHhcCCCcEEEEcHHHHHHHHHhc-CcCccceeEEEEeccccccCC---CcHHHHH
Q 000384 119 ----FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA-FLSLDIVCFIVIDECHHATGN---HPYTKIM 190 (1590)
Q Consensus 119 ----~~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~~-~~~l~~i~lII~DEaH~~~~~---~~~~~im 190 (1590)
+-.+.+.|+.. .+..-.++..+.+|+|+||+.|++.|.+. -+.+.++.+|||||++++..- .....|+
T Consensus 237 ~~hWIVPg~lmGGEk----kKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaDrlleLGfekdit~Il 312 (708)
T KOG0348|consen 237 PFHWIVPGVLMGGEK----KKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEADRLLELGFEKDITQIL 312 (708)
T ss_pred CceEEeeceeecccc----cccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEecchhHHHhccchhhHHHHH
Confidence 33444555443 22334556679999999999999998764 567888999999999999743 2344444
Q ss_pred HHHHhc-C-----CC---CCcEEEEeccCCccCCCCChhcHHHHHHHHHh-hcCCeeEeecchhhhhhcccCcceeeEec
Q 000384 191 KEFYHK-S-----DN---KPKVFGMTASPVVRKGVSSAMDCEGQISELES-TLDSQVFTIEDKTEMEVFVPSAKESCRFY 260 (1590)
Q Consensus 191 ~~~~~~-~-----~~---~priLgLTATP~~~~~~~~~~~~~~~i~~Le~-~l~~~i~~~~~~~~l~~~~~~p~~~~~~y 260 (1590)
+..-.. . .. +-.-+++|||.... +.+|-. .|+..++.-.|.... ... |..
T Consensus 313 ~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~------------V~rLa~~sLkDpv~I~ld~s~~-~~~--p~~----- 372 (708)
T KOG0348|consen 313 KAVHSIQNAECKDPKLPHQLQNMLLSATLTDG------------VNRLADLSLKDPVYISLDKSHS-QLN--PKD----- 372 (708)
T ss_pred HHHhhccchhcccccccHHHHhHhhhhhhHHH------------HHHHhhccccCceeeeccchhh-hcC--cch-----
Confidence 432110 0 11 12448899996532 233322 121111111110000 000 000
Q ss_pred cCCCCcccchhhhHHHhhhhhhhhHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Q 000384 261 DQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKV 340 (1590)
Q Consensus 261 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~ 340 (1590)
+.+++.... .+. ++ ++.++
T Consensus 373 -----------~a~~ev~~~--------------~~~---~~---------------------l~~~~------------ 391 (708)
T KOG0348|consen 373 -----------KAVQEVDDG--------------PAG---DK---------------------LDSFA------------ 391 (708)
T ss_pred -----------hhhhhcCCc--------------ccc---cc---------------------ccccc------------
Confidence 000000000 000 00 00000
Q ss_pred HhHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcCcchhhhccccCCccccccCCCCCHHH--HHHHHHHH-hcCCCCCcEE
Q 000384 341 LKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKL--HELLQLFL-SFGKSTQVLC 417 (1590)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~--~~L~~lL~-~~~~~~~~k~ 417 (1590)
..+.++.. ...+.+|+ -.|..+|. .+......+.
T Consensus 392 -------------------iPeqL~qr------------------------y~vVPpKLRLV~Laa~L~~~~k~~~~qk~ 428 (708)
T KOG0348|consen 392 -------------------IPEQLLQR------------------------YTVVPPKLRLVALAALLLNKVKFEEKQKM 428 (708)
T ss_pred -------------------CcHHhhhc------------------------eEecCCchhHHHHHHHHHHHhhhhhhcee
Confidence 00000000 00112232 33444332 2233445689
Q ss_pred EEEEehHHHHHHHHHHHhhC-----------C-------CCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCceEEE
Q 000384 418 IIFVERIIAAKVVERFVKKV-----------P-------FLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLF 479 (1590)
Q Consensus 418 IIFv~~r~ta~~L~~~L~~~-----------~-------~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~~vLV 479 (1590)
|||+.+.+.++.=+.+|... + .+.+.++..+||+ |++++|..+++.|+...-.||+
T Consensus 429 iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGs------m~QeeRts~f~~Fs~~~~~VLL 502 (708)
T KOG0348|consen 429 IVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGS------MEQEERTSVFQEFSHSRRAVLL 502 (708)
T ss_pred EEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCc------hhHHHHHHHHHhhccccceEEE
Confidence 99999999888777766532 0 1224567788998 9999999999999999888999
Q ss_pred EcccccccccCCCccEEEEccCCCCHHHHHHHhccccccCce--EEEEecc-chHHhh
Q 000384 480 ATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQ--FILMLER-SERSVT 534 (1590)
Q Consensus 480 aT~vleeGIDip~~~~VI~fD~p~s~~~yiQr~GRA~R~gs~--~ivlv~~-~E~~~~ 534 (1590)
||+|+++|||+|.+.+||.||.|.++..|+||+||+.|.|-+ .++++-+ +++++.
T Consensus 503 cTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alLfL~P~Eaey~~ 560 (708)
T KOG0348|consen 503 CTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALLFLLPSEAEYVN 560 (708)
T ss_pred ehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEEEecccHHHHHH
Confidence 999999999999999999999999999999999998887754 4444444 434444
|
|
| >KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-28 Score=277.96 Aligned_cols=317 Identities=20% Similarity=0.289 Sum_probs=241.9
Q ss_pred CCCCCcHHHHHHHHHHh-cCCEEEEeCCCChHHHHHHHHHHHHHH-HHH-hCCCCeEEEEEecChhhHHHHHHHHHhh--
Q 000384 42 INFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQ-AIK-SNGFKKLIIFLAPTVHLVHQQYDVIRVH-- 116 (1590)
Q Consensus 42 ~~~~pR~yQ~e~le~~~-~~n~Ii~~~TGsGKTliailli~~~l~-~~~-~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~-- 116 (1590)
.-.+|++.|.++++.++ ++++|-.+-||||||-+++.++.-.+. +-. ..+.++..||+|||++|+.|.+.+.+++
T Consensus 242 Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K 321 (731)
T KOG0339|consen 242 EYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGK 321 (731)
T ss_pred hcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhh
Confidence 45689999999999987 699999999999999999987655442 111 2366788999999999999999999887
Q ss_pred -cCCceEEEecCCCCCccchHHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCCCcHHHHHHHHHh
Q 000384 117 -TDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYH 195 (1590)
Q Consensus 117 -~~~~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~~~~~~im~~~~~ 195 (1590)
.++++..+||+.+..+ . ...+-.++.|+|+||++|++++..+-..+.++++|||||++++..- .|....+.+..
T Consensus 322 ~ygl~~v~~ygGgsk~e--Q--~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdm-Gfe~qVrSI~~ 396 (731)
T KOG0339|consen 322 AYGLRVVAVYGGGSKWE--Q--SKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDM-GFEPQVRSIKQ 396 (731)
T ss_pred hccceEEEeecCCcHHH--H--HHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhcc-ccHHHHHHHHh
Confidence 4899999999876432 2 2233368999999999999999999999999999999999998754 44444444444
Q ss_pred cCCCCCcEEEEeccCCccCCCCChhcHHHHHHHHHhh-cCCeeEeecchhhhhhcccCcceeeEeccCCCCcccchhhhH
Q 000384 196 KSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELEST-LDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKL 274 (1590)
Q Consensus 196 ~~~~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~-l~~~i~~~~~~~~l~~~~~~p~~~~~~y~~~~~~~~~l~~~~ 274 (1590)
...+..+-|.++||-- ..+..|-+- |...+..+. -+...
T Consensus 397 hirpdrQtllFsaTf~------------~kIe~lard~L~dpVrvVq------------------g~vge---------- 436 (731)
T KOG0339|consen 397 HIRPDRQTLLFSATFK------------KKIEKLARDILSDPVRVVQ------------------GEVGE---------- 436 (731)
T ss_pred hcCCcceEEEeeccch------------HHHHHHHHHHhcCCeeEEE------------------eehhc----------
Confidence 4566778899999942 334444321 111100000 00000
Q ss_pred HHhhhhhhhhHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHhHHHHHHHHhhhh
Q 000384 275 EVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSS 354 (1590)
Q Consensus 275 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (1590)
...
T Consensus 437 ------------------------an~----------------------------------------------------- 439 (731)
T KOG0339|consen 437 ------------------------ANE----------------------------------------------------- 439 (731)
T ss_pred ------------------------ccc-----------------------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHhhhcCcchhhhccccCCccccccCCCCCHHHHHHHHHHHhcCCCCCcEEEEEEehHHHHHHHHHHH
Q 000384 355 LQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFV 434 (1590)
Q Consensus 355 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L 434 (1590)
.+.+ ....+ ..-..|+.+|+..|..+.. ..++||||.-+..++.+...|
T Consensus 440 --------dITQ-~V~V~--------------------~s~~~Kl~wl~~~L~~f~S--~gkvlifVTKk~~~e~i~a~L 488 (731)
T KOG0339|consen 440 --------DITQ-TVSVC--------------------PSEEKKLNWLLRHLVEFSS--EGKVLIFVTKKADAEEIAANL 488 (731)
T ss_pred --------chhh-eeeec--------------------cCcHHHHHHHHHHhhhhcc--CCcEEEEEeccCCHHHHHHHh
Confidence 0000 00000 0114588888888887753 348999999999999999988
Q ss_pred hhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCceEEEEcccccccccCCCccEEEEccCCCCHHHHHHHhcc
Q 000384 435 KKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514 (1590)
Q Consensus 435 ~~~~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fD~p~s~~~yiQr~GR 514 (1590)
+- .++.+..+||+ |.+.+|+++|.+|+++.+.|||||+|+.+|+|||....||+||.-.+...|.||+||
T Consensus 489 kl----k~~~v~llhgd------kdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~ardIdththrigr 558 (731)
T KOG0339|consen 489 KL----KGFNVSLLHGD------KDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGR 558 (731)
T ss_pred cc----ccceeeeecCc------hhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecccccchhHHHHHHhhh
Confidence 75 78999999999 899999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCce
Q 000384 515 ARQHNSQ 521 (1590)
Q Consensus 515 A~R~gs~ 521 (1590)
.||.|.+
T Consensus 559 tgRag~k 565 (731)
T KOG0339|consen 559 TGRAGEK 565 (731)
T ss_pred ccccccc
Confidence 9999976
|
|
| >KOG0347 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-29 Score=285.25 Aligned_cols=336 Identities=21% Similarity=0.301 Sum_probs=228.1
Q ss_pred CCCCCcHHHHHHHHHHhc--CCEEEEeCCCChHHHHHHHHHHHHHH----------HHHhCCCCeEEEEEecChhhHHHH
Q 000384 42 INFIPRIYQLKVFEVAKR--RNTIAVLETGAGKTMIAVMLIKDIAQ----------AIKSNGFKKLIIFLAPTVHLVHQQ 109 (1590)
Q Consensus 42 ~~~~pR~yQ~e~le~~~~--~n~Ii~~~TGsGKTliailli~~~l~----------~~~~~~~~~~vl~LvPt~~Lv~Qq 109 (1590)
..-.|.+.|.-.+..+.. .+++-+++||||||+++.++|.+.+. .....+.....||++||++|+.|.
T Consensus 200 gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~LV~tPTRELa~QV 279 (731)
T KOG0347|consen 200 GFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIALVVTPTRELAHQV 279 (731)
T ss_pred CCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeEEecChHHHHHHH
Confidence 345789999999988873 79999999999999999998877321 112244555799999999999999
Q ss_pred HHHHHh---hcCCceEEEecCCCCCccchHHHHHhcCCCcEEEEcHHHHHHHHHhcCc---CccceeEEEEeccccccCC
Q 000384 110 YDVIRV---HTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL---SLDIVCFIVIDECHHATGN 183 (1590)
Q Consensus 110 ~~~i~~---~~~~~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~~~~---~l~~i~lII~DEaH~~~~~ 183 (1590)
.+.|.. .+++++..++|+..+... .+.+-...+|+|+||++|+.++..+.. .+.+++++|+||++++...
T Consensus 280 ~~Hl~ai~~~t~i~v~si~GGLavqKQ----qRlL~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaDRmvek 355 (731)
T KOG0347|consen 280 KQHLKAIAEKTQIRVASITGGLAVQKQ----QRLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEADRMVEK 355 (731)
T ss_pred HHHHHHhccccCeEEEEeechhHHHHH----HHHHhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHHHHhhh
Confidence 888776 468999999999876431 123334789999999999999976643 5688999999999999865
Q ss_pred CcH---HHHHHHHH-hcCCCCCcEEEEeccCCccCCCCChhcHHHHHHHHHhhcCCeeEeecchhhhhhcccCcceeeEe
Q 000384 184 HPY---TKIMKEFY-HKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRF 259 (1590)
Q Consensus 184 ~~~---~~im~~~~-~~~~~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~~~~~~~~l~~~~~~p~~~~~~ 259 (1590)
.-| ..+++.+. .+.+...+-|.+|||..-.-. ..+......
T Consensus 356 ghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~--------~~~~~~~k~--------------------------- 400 (731)
T KOG0347|consen 356 GHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQ--------QPLSSSRKK--------------------------- 400 (731)
T ss_pred ccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhc--------ChhHHhhhc---------------------------
Confidence 333 44444332 112334566888888532100 000000000
Q ss_pred ccCCCCcccchhhhHHHhhhhhhhhHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 000384 260 YDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEK 339 (1590)
Q Consensus 260 y~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~a~~~~~~~~~~ 339 (1590)
. .+ + ...-..+...+..+|....-
T Consensus 401 -----------------------------------~-------~k----~-~~~~~kiq~Lmk~ig~~~kp--------- 424 (731)
T KOG0347|consen 401 -----------------------------------K-------DK----E-DELNAKIQHLMKKIGFRGKP--------- 424 (731)
T ss_pred -----------------------------------c-------ch----h-hhhhHHHHHHHHHhCccCCC---------
Confidence 0 00 0 00001111112222211100
Q ss_pred hHhHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcCcchhhhccccCCccccccCCCCCHHHHHHHHHHHhcC---------
Q 000384 340 VLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFG--------- 410 (1590)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~--------- 410 (1590)
+.++....+.-...|.+-+-.+.
T Consensus 425 ------------------------------------------------kiiD~t~q~~ta~~l~Es~I~C~~~eKD~yly 456 (731)
T KOG0347|consen 425 ------------------------------------------------KIIDLTPQSATASTLTESLIECPPLEKDLYLY 456 (731)
T ss_pred ------------------------------------------------eeEecCcchhHHHHHHHHhhcCCccccceeEE
Confidence 00000011111122222111110
Q ss_pred ---CCCCcEEEEEEehHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCceEEEEccccccc
Q 000384 411 ---KSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEG 487 (1590)
Q Consensus 411 ---~~~~~k~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~~vLVaT~vleeG 487 (1590)
..-..++|||||++..+..|.-+|+.+ ++.+..+|.. |.+++|.+.+++|++..--|||||+|+.+|
T Consensus 457 Yfl~ryPGrTlVF~NsId~vKRLt~~L~~L----~i~p~~LHA~------M~QKqRLknLEkF~~~~~~VLiaTDVAARG 526 (731)
T KOG0347|consen 457 YFLTRYPGRTLVFCNSIDCVKRLTVLLNNL----DIPPLPLHAS------MIQKQRLKNLEKFKQSPSGVLIATDVAARG 526 (731)
T ss_pred EEEeecCCceEEEechHHHHHHHHHHHhhc----CCCCchhhHH------HHHHHHHHhHHHHhcCCCeEEEeehhhhcc
Confidence 011358999999999999999999885 5677788988 999999999999999999999999999999
Q ss_pred ccCCCccEEEEccCCCCHHHHHHHhccccccCce--EEEEeccch
Q 000384 488 MHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQ--FILMLERSE 530 (1590)
Q Consensus 488 IDip~~~~VI~fD~p~s~~~yiQr~GRA~R~gs~--~ivlv~~~E 530 (1590)
||||++.+||+|-.|.+..-|+||.||+.|+++. -++|+.+.|
T Consensus 527 LDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e 571 (731)
T KOG0347|consen 527 LDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQE 571 (731)
T ss_pred CCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChHH
Confidence 9999999999999999999999999999999986 444444443
|
|
| >TIGR02191 RNaseIII ribonuclease III, bacterial | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-29 Score=282.30 Aligned_cols=208 Identities=25% Similarity=0.352 Sum_probs=169.1
Q ss_pred HHHHHhcccCCCCCChHHHHHhhcCCCCCC-----CCCcchhhhhhhhhHhHHHHHHHHhhCCCCCcchhHHHHHHhhch
Q 000384 1030 LREEINCHSRNFHIPSSLILEALTTLGCCE-----SFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCN 1104 (1590)
Q Consensus 1030 l~~~l~~~~~~~~~~~~lll~AlT~~s~~~-----~~n~ErLE~LGDs~Lk~~~s~~l~~~~p~~~eg~ls~~r~~~v~N 1104 (1590)
|+++|+|.|.| ++++.+||||+|+.. ..||||||||||++|+++++.++|.+||+.++|.|+.+|+.+|||
T Consensus 1 ~e~~lgy~F~~----~~ll~~Alth~S~~~~~~~~~~~nerLe~lGd~vl~~~~~~~l~~~~p~~~~~~l~~~~~~lvsn 76 (220)
T TIGR02191 1 LEKRLGYKFKN----KELLEQALTHSSYANEHHKGVKNNERLEFLGDAVLGLVVAEYLFKNFPDLSEGELSKLRAALVSE 76 (220)
T ss_pred ChHHhCCCcCC----HHHHHHHhcCcccccccccCccchHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCH
Confidence 46789999988 999999999999853 359999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCccccccccCCCCcccCCCccCCCCCCCCCCCCcccccCCCcccccccceecCCcCCCCccccccchhh
Q 000384 1105 STLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIA 1184 (1590)
Q Consensus 1105 ~~L~~~a~~~gl~~~i~~~~f~~~~w~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~iA 1184 (1590)
.+|+.+|.++||+.||+..+ +.. .
T Consensus 77 ~~la~~a~~~gl~~~i~~~~---------~~~------------------------------------~----------- 100 (220)
T TIGR02191 77 ESLAEVARELGLGKFLLLGK---------GEE------------------------------------K----------- 100 (220)
T ss_pred HHHHHHHHHCCcHHHhccCc---------hHh------------------------------------h-----------
Confidence 99999999999999998542 000 0
Q ss_pred hHHHHHHHHhhhccChhHHHHHHHHhCCCccccchhhhhhhhcccccccCCChHHHHHHHHHhCCccCCHHHHHHHHccC
Q 000384 1185 DCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHA 1264 (1590)
Q Consensus 1185 D~vEAliGA~~~~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~lgy~F~~~~LL~~AlTH~ 1264 (1590)
T Consensus 101 -------------------------------------------------------------------------------- 100 (220)
T TIGR02191 101 -------------------------------------------------------------------------------- 100 (220)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcchHHHHHHhcccChHHHHHHHHHHHcCCCCCCCCCCCCCCCCCchhhhHHHHHHhceeecCCCChHHHHHHHHh
Q 000384 1265 SVQEFYCYQNLYKHLQHCSTLLLSQITEYVKSFPKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKP 1344 (1590)
Q Consensus 1265 S~~~~~~ye~L~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~l~D~~Ea~iGAi~lDsg~~~~~~~~~~~~ 1344 (1590)
......+|+++|+|||+|||||+|+|+ +.+++|+..
T Consensus 101 ------------------------------------------~~~~~~~k~~ad~~eAliGAiyld~g~--~~~~~~i~~ 136 (220)
T TIGR02191 101 ------------------------------------------SGGRRRESILADAFEALIGAIYLDSGL--EAARKFILK 136 (220)
T ss_pred ------------------------------------------cCCcccchHHHHHHHHHHHHHHHhCCH--HHHHHHHHH
Confidence 000224677888888888888888874 777777777
Q ss_pred hhccccCC---CCCCCChhhHHHHHHHhcCCcce-eeee-eeCce--EEEEEEEEEcCeEEEEEEEeCCHHHHHHHHHHH
Q 000384 1345 ILSPIVTP---DKLELPPLRELIELCDSLGYFVK-ENCT-LKGEM--VHAELRLQLKDVLLVGEGQERSRKAAKGKAASQ 1417 (1590)
Q Consensus 1345 ~l~~~i~~---~~~~~~P~~~L~e~~~~~~~~~~-~~~~-~~g~~--~~~~~~v~~~g~~~~~~g~g~skk~Ak~~AA~~ 1417 (1590)
++.|.+.. .....||++.|+|+|++.+...+ +.+. ..|+. +.|.|.|+++|. ..++|.|.|||+||..||++
T Consensus 137 ~~~~~~~~~~~~~~~~~pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~~~~~-~~~~g~g~skk~A~~~AA~~ 215 (220)
T TIGR02191 137 LLIPRIDAIEKEETLKDYKTALQEWAQARGKPLPEYRLIKEEGPDHDKEFTVEVSVNGE-PYGEGKGKSKKEAEQNAAKA 215 (220)
T ss_pred HHHHHHHhhhcccccCChHHHHHHHHHHcCCCCceEEEecccCCCCCceEEEEEEECCE-EEEEeeeCCHHHHHHHHHHH
Confidence 77666543 23457999999999998766444 3333 33543 689999999986 89999999999999999999
Q ss_pred HHHHh
Q 000384 1418 LLKKL 1422 (1590)
Q Consensus 1418 AL~~L 1422 (1590)
||++|
T Consensus 216 Al~~l 220 (220)
T TIGR02191 216 ALEKL 220 (220)
T ss_pred HHHhC
Confidence 99875
|
This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family. |
| >PRK10689 transcription-repair coupling factor; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-28 Score=323.95 Aligned_cols=309 Identities=17% Similarity=0.264 Sum_probs=212.7
Q ss_pred CCCCCCCCcHHHHHHHHHHhc-------CCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHH
Q 000384 39 TNSINFIPRIYQLKVFEVAKR-------RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYD 111 (1590)
Q Consensus 39 ~~~~~~~pR~yQ~e~le~~~~-------~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~ 111 (1590)
.....|+|++.|.++++.++. +|++++++||+|||.+|+.++...+. .++.++|||||++|+.|+++
T Consensus 594 ~~~~~~~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~------~g~qvlvLvPT~eLA~Q~~~ 667 (1147)
T PRK10689 594 CDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE------NHKQVAVLVPTTLLAQQHYD 667 (1147)
T ss_pred HHhCCCCCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH------cCCeEEEEeCcHHHHHHHHH
Confidence 345678999999999999874 68999999999999999877655443 34569999999999999999
Q ss_pred HHHhhc---CCceEEEecCCCCCccchHHHHHhc-CCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCCCcHH
Q 000384 112 VIRVHT---DFEVEEYYGAKGVDEWDSQCWQKEI-NKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYT 187 (1590)
Q Consensus 112 ~i~~~~---~~~v~~~~G~~~~d~~~~~~w~~~~-~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~~~~~ 187 (1590)
.++..+ ++++..++|..+... ..+.|.... ...+|+|+||+.+ +..+.+.++++||+||+|++.. ...
T Consensus 668 ~f~~~~~~~~v~i~~l~g~~s~~e-~~~il~~l~~g~~dIVVgTp~lL-----~~~v~~~~L~lLVIDEahrfG~--~~~ 739 (1147)
T PRK10689 668 NFRDRFANWPVRIEMLSRFRSAKE-QTQILAEAAEGKIDILIGTHKLL-----QSDVKWKDLGLLIVDEEHRFGV--RHK 739 (1147)
T ss_pred HHHHhhccCCceEEEEECCCCHHH-HHHHHHHHHhCCCCEEEECHHHH-----hCCCCHhhCCEEEEechhhcch--hHH
Confidence 999754 467778888765443 222333322 3689999999755 2345678999999999999832 122
Q ss_pred HHHHHHHhcCCCCCcEEEEeccCCccCCCCChhcHHHHHHH-HHhhcCCeeEeecchhhhhhcccCcceeeEeccCCCCc
Q 000384 188 KIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISE-LESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFC 266 (1590)
Q Consensus 188 ~im~~~~~~~~~~priLgLTATP~~~~~~~~~~~~~~~i~~-Le~~l~~~i~~~~~~~~l~~~~~~p~~~~~~y~~~~~~ 266 (1590)
..+ ......+++|+|||||.... +.. +....+..+... .|.. ..
T Consensus 740 e~l----k~l~~~~qvLl~SATpiprt-----------l~l~~~gl~d~~~I~~-----------~p~~--------r~- 784 (1147)
T PRK10689 740 ERI----KAMRADVDILTLTATPIPRT-----------LNMAMSGMRDLSIIAT-----------PPAR--------RL- 784 (1147)
T ss_pred HHH----HhcCCCCcEEEEcCCCCHHH-----------HHHHHhhCCCcEEEec-----------CCCC--------CC-
Confidence 222 33356789999999997431 100 001111110000 0000 00
Q ss_pred ccchhhhHHHhhhhhhhhHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHhHHHH
Q 000384 267 GSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEE 346 (1590)
Q Consensus 267 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~ 346 (1590)
. +.. .+.....
T Consensus 785 --~----v~~------------------~~~~~~~--------------------------------------------- 795 (1147)
T PRK10689 785 --A----VKT------------------FVREYDS--------------------------------------------- 795 (1147)
T ss_pred --C----ceE------------------EEEecCc---------------------------------------------
Confidence 0 000 0000000
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHhhhcCcchhhhccccCCccccccCCCCCHHHHHHHHHHHhcCCCCCcEEEEEEehHHH
Q 000384 347 CEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIA 426 (1590)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~t 426 (1590)
...|...+.++. .+.+++|||+++..
T Consensus 796 ------------------------------------------------~~~k~~il~el~------r~gqv~vf~n~i~~ 821 (1147)
T PRK10689 796 ------------------------------------------------LVVREAILREIL------RGGQVYYLYNDVEN 821 (1147)
T ss_pred ------------------------------------------------HHHHHHHHHHHh------cCCeEEEEECCHHH
Confidence 000001111111 23479999999999
Q ss_pred HHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCceEEEEcccccccccCCCccEEEEccCC-CCH
Q 000384 427 AKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLP-KTV 505 (1590)
Q Consensus 427 a~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fD~p-~s~ 505 (1590)
++.+++.|... +++..+..+||. |++++|.+++++|++|+++|||||+++++|||+|++++||..+.. .++
T Consensus 822 ie~la~~L~~~--~p~~~v~~lHG~------m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~fgl 893 (1147)
T PRK10689 822 IQKAAERLAEL--VPEARIAIGHGQ------MRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGL 893 (1147)
T ss_pred HHHHHHHHHHh--CCCCcEEEEeCC------CCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEecCCCCCH
Confidence 99999999874 246788899998 999999999999999999999999999999999999999955442 356
Q ss_pred HHHHHHhccccccCce-EEEEec
Q 000384 506 SSYIQSRGRARQHNSQ-FILMLE 527 (1590)
Q Consensus 506 ~~yiQr~GRA~R~gs~-~ivlv~ 527 (1590)
.+|+||+||+||.|.+ +++++.
T Consensus 894 aq~~Qr~GRvGR~g~~g~a~ll~ 916 (1147)
T PRK10689 894 AQLHQLRGRVGRSHHQAYAWLLT 916 (1147)
T ss_pred HHHHHHhhccCCCCCceEEEEEe
Confidence 6899999999998865 555553
|
|
| >KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.8e-29 Score=279.65 Aligned_cols=355 Identities=22% Similarity=0.296 Sum_probs=218.5
Q ss_pred CCCCcHHHHHHHHHHh----------cCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHH
Q 000384 43 NFIPRIYQLKVFEVAK----------RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDV 112 (1590)
Q Consensus 43 ~~~pR~yQ~e~le~~~----------~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~ 112 (1590)
.-..-|.|..++..++ .+++.|.+|||||||++++++|.+.+.. ..-+.-+++||+||+.|+.|.+++
T Consensus 157 is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~--R~v~~LRavVivPtr~L~~QV~~~ 234 (620)
T KOG0350|consen 157 ISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSS--RPVKRLRAVVIVPTRELALQVYDT 234 (620)
T ss_pred cccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHcc--CCccceEEEEEeeHHHHHHHHHHH
Confidence 3456788888887774 2789999999999999999999988752 123446799999999999999999
Q ss_pred HHhhc---CCceEEEecCCCCCccchHHHHHhcC----CCcEEEEcHHHHHHHHH-hcCcCccceeEEEEeccccccCCC
Q 000384 113 IRVHT---DFEVEEYYGAKGVDEWDSQCWQKEIN----KNDVLVMTPQILLDALR-KAFLSLDIVCFIVIDECHHATGNH 184 (1590)
Q Consensus 113 i~~~~---~~~v~~~~G~~~~d~~~~~~w~~~~~----~~~VlV~T~q~L~~~l~-~~~~~l~~i~lII~DEaH~~~~~~ 184 (1590)
|..+. |+.|....|..+... +..+..-. ..+|+|+||++|.+.++ ...+.++++.++|+|||+++.+.
T Consensus 235 f~~~~~~tgL~V~~~sgq~sl~~---E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll~q- 310 (620)
T KOG0350|consen 235 FKRLNSGTGLAVCSLSGQNSLED---EARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLLDQ- 310 (620)
T ss_pred HHHhccCCceEEEecccccchHH---HHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHHHHHHH-
Confidence 99985 678888888765432 22122222 34999999999999998 45678999999999999999754
Q ss_pred cHHHHHHHHHhcCC------CCCcEEEEec--cCCccCCCCChhcHHHHHHHHHhhcCCeeEeecchhhhhhcccCccee
Q 000384 185 PYTKIMKEFYHKSD------NKPKVFGMTA--SPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKES 256 (1590)
Q Consensus 185 ~~~~im~~~~~~~~------~~priLgLTA--TP~~~~~~~~~~~~~~~i~~Le~~l~~~i~~~~~~~~l~~~~~~p~~~ 256 (1590)
.|...+........ ..-.+|-++- +|.. +..+.+.++
T Consensus 311 sfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~-------------~~e~~t~~~---------------------- 355 (620)
T KOG0350|consen 311 SFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTV-------------LSELLTKLG---------------------- 355 (620)
T ss_pred HHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchh-------------hHHHHhhcC----------------------
Confidence 33332222111110 0111222221 1211 111111110
Q ss_pred eEeccCCCC--cccchhhhHHHhhhhhhhhHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHH-HhhhhHHHHHH
Q 000384 257 CRFYDQSKF--CGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLD-ELGLICAYEAV 333 (1590)
Q Consensus 257 ~~~y~~~~~--~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~lg~~~a~~~~ 333 (1590)
..|.+... ++. ++.. .+.++..+.... ++ +..+.. ..|.+..
T Consensus 356 -~~~~~l~kL~~sa---------------tLsq-----------dP~Kl~~l~l~~---Pr-l~~v~~~~~~rysl---- 400 (620)
T KOG0350|consen 356 -KLYPPLWKLVFSA---------------TLSQ-----------DPSKLKDLTLHI---PR-LFHVSKPLIGRYSL---- 400 (620)
T ss_pred -CcCchhHhhhcch---------------hhhc-----------ChHHHhhhhcCC---Cc-eEEeecccceeeec----
Confidence 00111100 000 0000 000000000000 00 000000 0000000
Q ss_pred HHHHHHhHhHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcCcchhhhccccCCccccccCCCCCHHHHHHHHHHHhcCCCC
Q 000384 334 KICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKST 413 (1590)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~ 413 (1590)
+ ..+ .... .+ ...--|...+..++..+ +
T Consensus 401 -----------------------p-~~l-------~~~~----------------vv--~~~~~kpl~~~~lI~~~---k 428 (620)
T KOG0350|consen 401 -----------------------P-SSL-------SHRL----------------VV--TEPKFKPLAVYALITSN---K 428 (620)
T ss_pred -----------------------C-hhh-------hhce----------------ee--cccccchHhHHHHHHHh---h
Confidence 0 000 0000 00 00012334444455443 3
Q ss_pred CcEEEEEEehHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCceEEEEcccccccccCCCc
Q 000384 414 QVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNC 493 (1590)
Q Consensus 414 ~~k~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~~vLVaT~vleeGIDip~~ 493 (1590)
..++|+|+++..++..|.+.|+-...-.+.++..+.|. ++.+.|.+.+++|+.|++++|||++++.+|||+-++
T Consensus 429 ~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~------l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v 502 (620)
T KOG0350|consen 429 LNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQ------LNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDV 502 (620)
T ss_pred cceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhh------hhHHHHHHHHHHHhcCCceEEEehhhhhcCCccccc
Confidence 56899999999999999999983222245666677787 899999999999999999999999999999999999
Q ss_pred cEEEEccCCCCHHHHHHHhccccccCce---EEEEeccchH
Q 000384 494 SYVIRFDLPKTVSSYIQSRGRARQHNSQ---FILMLERSER 531 (1590)
Q Consensus 494 ~~VI~fD~p~s~~~yiQr~GRA~R~gs~---~ivlv~~~E~ 531 (1590)
+.||+||+|.+..+|+||+||++|+|+. +.++...++.
T Consensus 503 ~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~tll~~~~~r 543 (620)
T KOG0350|consen 503 DNVINYDPPASDKTYVHRAGRTARAGQDGYAITLLDKHEKR 543 (620)
T ss_pred ceEeecCCCchhhHHHHhhcccccccCCceEEEeeccccch
Confidence 9999999999999999999999888864 4344344443
|
|
| >KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.6e-28 Score=287.00 Aligned_cols=418 Identities=19% Similarity=0.219 Sum_probs=260.3
Q ss_pred CCCCCcHHHHHHHHHHh-----cCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhh
Q 000384 42 INFIPRIYQLKVFEVAK-----RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVH 116 (1590)
Q Consensus 42 ~~~~pR~yQ~e~le~~~-----~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~ 116 (1590)
..-.+|+||.+.++++. +-|+|+++++|.|||+++|.++..+.. ..+-.+.-+|+||...| .+|.++|+++
T Consensus 164 ~~g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~---~~~~~GPfLVi~P~StL-~NW~~Ef~rf 239 (971)
T KOG0385|consen 164 KGGELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKG---RKGIPGPFLVIAPKSTL-DNWMNEFKRF 239 (971)
T ss_pred cCCccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHH---hcCCCCCeEEEeeHhhH-HHHHHHHHHh
Confidence 34789999999999885 478999999999999999998877654 22323347999999887 5699999999
Q ss_pred c-CCceEEEecCCCCCccchHHHHHhc--CCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCCC-cHHHHHHH
Q 000384 117 T-DFEVEEYYGAKGVDEWDSQCWQKEI--NKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNH-PYTKIMKE 192 (1590)
Q Consensus 117 ~-~~~v~~~~G~~~~d~~~~~~w~~~~--~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~~-~~~~im~~ 192 (1590)
+ ++++..|+|+... .....+..+ ...+|+|+|+++.++. ..++.--.|.+||+||||+++..+ -..+++++
T Consensus 240 ~P~l~~~~~~Gdk~e---R~~~~r~~~~~~~fdV~iTsYEi~i~d--k~~lk~~~W~ylvIDEaHRiKN~~s~L~~~lr~ 314 (971)
T KOG0385|consen 240 TPSLNVVVYHGDKEE---RAALRRDIMLPGRFDVCITSYEIAIKD--KSFLKKFNWRYLVIDEAHRIKNEKSKLSKILRE 314 (971)
T ss_pred CCCcceEEEeCCHHH---HHHHHHHhhccCCCceEeehHHHHHhh--HHHHhcCCceEEEechhhhhcchhhHHHHHHHH
Confidence 8 5999999997521 111222222 3689999999999775 445566779999999999998653 35677887
Q ss_pred HHhcCCCCCcEEEEeccCCccCCCCChhcHHHHHHHHHhhcCC---eeEeecchhhhhhcccCcceeeEeccCCCCcccc
Q 000384 193 FYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDS---QVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSD 269 (1590)
Q Consensus 193 ~~~~~~~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~---~i~~~~~~~~l~~~~~~p~~~~~~y~~~~~~~~~ 269 (1590)
| ..+..|++|+||.+|+ +.+|.++|+- .+++ +.+.+..++..- .. ..
T Consensus 315 f-----~~~nrLLlTGTPLQNN-----------L~ELWaLLnFllPdiF~--~~e~F~swF~~~----------~~--~~ 364 (971)
T KOG0385|consen 315 F-----KTDNRLLLTGTPLQNN-----------LHELWALLNFLLPDIFN--SAEDFDSWFDFT----------NC--EG 364 (971)
T ss_pred h-----cccceeEeeCCccccc-----------HHHHHHHHHhhchhhcc--CHHHHHHHHccc----------cc--cc
Confidence 7 5688999999999987 5666666642 1111 112222221110 00 00
Q ss_pred hhhhHHHhhhhhhhhHHH-HHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHH----HH--HHHHHHHHhHh
Q 000384 270 LKGKLEVSWSKFDASLSK-LQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICA----YE--AVKICLEKVLK 342 (1590)
Q Consensus 270 l~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~a----~~--~~~~~~~~~~~ 342 (1590)
-.+.+.....-+.+++.+ +....... ++.+ .++-.++. .+ +-......+..
T Consensus 365 ~~e~v~~Lh~vL~pFlLRR~K~dVe~s---LppK-------------------kE~~iyvgms~mQkk~Y~~iL~kdl~~ 422 (971)
T KOG0385|consen 365 DQELVSRLHKVLRPFLLRRIKSDVEKS---LPPK-------------------KELIIYVGMSSMQKKWYKAILMKDLDA 422 (971)
T ss_pred CHHHHHHHHhhhhHHHHHHHHHhHhhc---CCCc-------------------ceeeEeccchHHHHHHHHHHHHhcchh
Confidence 000111111111111111 00000000 0000 00000000 00 00000011100
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHhhhcCcchhhh-ccccCCccccccCCCCCHHHHHHHHHHHhcCCCCCcEEEEEE
Q 000384 343 AQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIF-LDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFV 421 (1590)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv 421 (1590)
...+. ......+.+++-++++-.....-+. ...+.........-.-|.|+..|-++|.... ..+.|++||.
T Consensus 423 ~n~~~-------~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv~nSGKm~vLDkLL~~Lk-~~GhRVLIFS 494 (971)
T KOG0385|consen 423 LNGEG-------KGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLVTNSGKMLVLDKLLPKLK-EQGHRVLIFS 494 (971)
T ss_pred hcccc-------cchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHHHhcCcceehHHHHHHHHH-hCCCeEEEeH
Confidence 00000 0011223333333333222111000 0000000001111234889999999998776 5688999999
Q ss_pred ehHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCC---CceEEEEcccccccccCCCccEEEE
Q 000384 422 ERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGG---KVNLLFATDVIEEGMHVPNCSYVIR 498 (1590)
Q Consensus 422 ~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g---~~~vLVaT~vleeGIDip~~~~VI~ 498 (1590)
+...+.+.|.+++.- +++....+.|+ ++.++|...++.|... ..-+|++|.+++-|||+.++++||.
T Consensus 495 Qmt~mLDILeDyc~~----R~y~ycRiDGS------t~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIl 564 (971)
T KOG0385|consen 495 QMTRMLDILEDYCML----RGYEYCRLDGS------TSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVIL 564 (971)
T ss_pred HHHHHHHHHHHHHHh----cCceeEeecCC------CCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEEEE
Confidence 999999999988864 78899999998 7999999999999864 3668999999999999999999999
Q ss_pred ccCCCCHHHHHHHhccccccCceEEEEecc-------chHHhhhhhh
Q 000384 499 FDLPKTVSSYIQSRGRARQHNSQFILMLER-------SERSVTDTAL 538 (1590)
Q Consensus 499 fD~p~s~~~yiQr~GRA~R~gs~~ivlv~~-------~E~~~~~~~~ 538 (1590)
||..||+..-.|.+.||+|.|++--|.|.+ +|..+++...
T Consensus 565 yDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe~IveRA~~ 611 (971)
T KOG0385|consen 565 YDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVEEKIVERAAA 611 (971)
T ss_pred ecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHHHHHHHHHHH
Confidence 999999999999999999999974444433 4555555433
|
|
| >KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-29 Score=274.10 Aligned_cols=323 Identities=20% Similarity=0.310 Sum_probs=235.0
Q ss_pred CCCCCCcHHHHHHHHHHh-cCCEEEEeCCCChHHHHHHHHHHHHH--HHHH---hCCCCeEEEEEecChhhHHHHHHHHH
Q 000384 41 SINFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIA--QAIK---SNGFKKLIIFLAPTVHLVHQQYDVIR 114 (1590)
Q Consensus 41 ~~~~~pR~yQ~e~le~~~-~~n~Ii~~~TGsGKTliailli~~~l--~~~~---~~~~~~~vl~LvPt~~Lv~Qq~~~i~ 114 (1590)
.....|.|.|.+.++.++ +++.|-.+-||||||+++++++.-+. +... ..+.++..|++||+++|+.|.++.+.
T Consensus 188 KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie 267 (610)
T KOG0341|consen 188 KGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIE 267 (610)
T ss_pred cCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHH
Confidence 456889999999999887 69999999999999999988655433 2111 24556678999999999999999988
Q ss_pred hhc---------CCceEEEecCCCCCccchHHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCCCc
Q 000384 115 VHT---------DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHP 185 (1590)
Q Consensus 115 ~~~---------~~~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~~~ 185 (1590)
.++ .++...+.|+..+.+ .......+.+|+|+||+.|.++|....++++-..++.+|||+++.+- .
T Consensus 268 ~~~~~L~e~g~P~lRs~LciGG~~v~e----ql~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDm-G 342 (610)
T KOG0341|consen 268 QYVAALQEAGYPELRSLLCIGGVPVRE----QLDVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDM-G 342 (610)
T ss_pred HHHHHHHhcCChhhhhhhhhcCccHHH----HHHHHhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhc-c
Confidence 753 257777888877653 33445568999999999999999999999999999999999999854 3
Q ss_pred HHHHHHHHHhcCCCCCcEEEEeccCCccCCCCChhcHHHHHHHHHhhcCCeeEeecchhhhhhcccCcceeeEeccCCCC
Q 000384 186 YTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKF 265 (1590)
Q Consensus 186 ~~~im~~~~~~~~~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~~~~~~~~l~~~~~~p~~~~~~y~~~~~ 265 (1590)
|..-++..+...+...+.|++|||.-.. |......- +-+|... .......
T Consensus 343 FEddir~iF~~FK~QRQTLLFSATMP~K------------IQ~FAkSA----------------LVKPvtv--NVGRAGA 392 (610)
T KOG0341|consen 343 FEDDIRTIFSFFKGQRQTLLFSATMPKK------------IQNFAKSA----------------LVKPVTV--NVGRAGA 392 (610)
T ss_pred chhhHHHHHHHHhhhhheeeeeccccHH------------HHHHHHhh----------------cccceEE--ecccccc
Confidence 3333333333335567889999994311 11111100 0011000 0000000
Q ss_pred cccchhhhHHHhhhhhhhhHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHhHHH
Q 000384 266 CGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQE 345 (1590)
Q Consensus 266 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~ 345 (1590)
....+
T Consensus 393 --------------------------------------------------AsldV------------------------- 397 (610)
T KOG0341|consen 393 --------------------------------------------------ASLDV------------------------- 397 (610)
T ss_pred --------------------------------------------------cchhH-------------------------
Confidence 00000
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHhhhcCcchhhhccccCCccccccCCCCCHHHHHHHHHHHhcCCCCCcEEEEEEehHH
Q 000384 346 ECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERII 425 (1590)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~ 425 (1590)
.+..+|.. ...|+-.|++-|.. ....++||++.+.
T Consensus 398 ---------iQevEyVk--------------------------------qEaKiVylLeCLQK----T~PpVLIFaEkK~ 432 (610)
T KOG0341|consen 398 ---------IQEVEYVK--------------------------------QEAKIVYLLECLQK----TSPPVLIFAEKKA 432 (610)
T ss_pred ---------HHHHHHHH--------------------------------hhhhhhhHHHHhcc----CCCceEEEecccc
Confidence 00001110 02355556665543 2347999999999
Q ss_pred HHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCceEEEEcccccccccCCCccEEEEccCCCCH
Q 000384 426 AAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTV 505 (1590)
Q Consensus 426 ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fD~p~s~ 505 (1590)
.++.+.++|-- .++.+..+||. -.+++|...++.||.|+-.|||||+|++.|+|+|++.+||+||+|...
T Consensus 433 DVD~IhEYLLl----KGVEavaIHGG------KDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP~eI 502 (610)
T KOG0341|consen 433 DVDDIHEYLLL----KGVEAVAIHGG------KDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMPEEI 502 (610)
T ss_pred ChHHHHHHHHH----ccceeEEeecC------cchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCChHHH
Confidence 99999998865 78999999998 589999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccccccCce--EEEEecc
Q 000384 506 SSYIQSRGRARQHNSQ--FILMLER 528 (1590)
Q Consensus 506 ~~yiQr~GRA~R~gs~--~ivlv~~ 528 (1590)
..|+||+||+||.|.+ ...+++.
T Consensus 503 ENYVHRIGRTGRsg~~GiATTfINK 527 (610)
T KOG0341|consen 503 ENYVHRIGRTGRSGKTGIATTFINK 527 (610)
T ss_pred HHHHHHhcccCCCCCcceeeeeecc
Confidence 9999999999999986 4455554
|
|
| >KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.3e-28 Score=267.51 Aligned_cols=324 Identities=20% Similarity=0.251 Sum_probs=228.8
Q ss_pred CCCCCcHHHHHHHHHHh-cCCEEEEeCCCChHHHHHHHHHHHHH--H-HHHhCCCCeEEEEEecChhhHHHHHHHHHhhc
Q 000384 42 INFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIA--Q-AIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT 117 (1590)
Q Consensus 42 ~~~~pR~yQ~e~le~~~-~~n~Ii~~~TGsGKTliailli~~~l--~-~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~ 117 (1590)
..-+|.|.|.++++.++ +.++|.++-||+|||++++++-.-.+ + ....+..+..+|++.||++|+.|..-+..++.
T Consensus 239 GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kys 318 (629)
T KOG0336|consen 239 GFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYS 318 (629)
T ss_pred cCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhh
Confidence 45679999999999987 69999999999999999998532211 1 11224455669999999999999988887753
Q ss_pred --CCceEEEecCCCCCccchHHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCCCcHHHHHHHHHh
Q 000384 118 --DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYH 195 (1590)
Q Consensus 118 --~~~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~~~~~~im~~~~~ 195 (1590)
+.+...++|+.+.+. .-...-.+.+|+++||+.|.++...+.+.+..+.++|+|||+++.+-.---+|++- +.
T Consensus 319 yng~ksvc~ygggnR~e----qie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqIrki-ll 393 (629)
T KOG0336|consen 319 YNGLKSVCVYGGGNRNE----QIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQIRKI-LL 393 (629)
T ss_pred hcCcceEEEecCCCchh----HHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHHHHHH-hh
Confidence 777777888765443 23444568999999999999999999999999999999999999865333444443 23
Q ss_pred cCCCCCcEEEEeccCCccCCCCChhcHHHHHHHHHhhcCCeeEeecchhhhhhcccCcceeeEeccCC-CCcccchhhhH
Q 000384 196 KSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQS-KFCGSDLKGKL 274 (1590)
Q Consensus 196 ~~~~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~~~~~~~~l~~~~~~p~~~~~~y~~~-~~~~~~l~~~~ 274 (1590)
...+..+.+.-|||=- ..++.|.. .|...|.. .|... ....
T Consensus 394 diRPDRqtvmTSATWP------------~~VrrLa~----------------sY~Kep~~---v~vGsLdL~a------- 435 (629)
T KOG0336|consen 394 DIRPDRQTVMTSATWP------------EGVRRLAQ----------------SYLKEPMI---VYVGSLDLVA------- 435 (629)
T ss_pred hcCCcceeeeecccCc------------hHHHHHHH----------------HhhhCceE---EEecccceee-------
Confidence 3345556677777721 11233322 12222211 11100 0000
Q ss_pred HHhhhhhhhhHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHhHHHHHHHHhhhh
Q 000384 275 EVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSS 354 (1590)
Q Consensus 275 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (1590)
T Consensus 436 -------------------------------------------------------------------------------- 435 (629)
T KOG0336|consen 436 -------------------------------------------------------------------------------- 435 (629)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHhhhcCcchhhhccccCCccccccCCCCCHHHHHHHHHHHhcCCCCCcEEEEEEehHHHHHHHHHHH
Q 000384 355 LQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFV 434 (1590)
Q Consensus 355 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L 434 (1590)
...+.+ + +.....+.|+.....++.... .+.++||||.++..|+-|..-|
T Consensus 436 ----------~~sVkQ-------~-----------i~v~~d~~k~~~~~~f~~~ms--~ndKvIiFv~~K~~AD~LSSd~ 485 (629)
T KOG0336|consen 436 ----------VKSVKQ-------N-----------IIVTTDSEKLEIVQFFVANMS--SNDKVIIFVSRKVMADHLSSDF 485 (629)
T ss_pred ----------eeeeee-------e-----------EEecccHHHHHHHHHHHHhcC--CCceEEEEEechhhhhhccchh
Confidence 000000 0 000111344444444444443 3558999999999988877655
Q ss_pred hhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCceEEEEcccccccccCCCccEEEEccCCCCHHHHHHHhcc
Q 000384 435 KKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514 (1590)
Q Consensus 435 ~~~~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fD~p~s~~~yiQr~GR 514 (1590)
. +.++....+||. -.+.+|+..++.|++|+++|||||+++.+|||+|++.+|++||.|.+...|+||+||
T Consensus 486 ~----l~gi~~q~lHG~------r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGr 555 (629)
T KOG0336|consen 486 C----LKGISSQSLHGN------REQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGR 555 (629)
T ss_pred h----hcccchhhccCC------hhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcc
Confidence 4 378999999998 588999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCce--EEEEecc
Q 000384 515 ARQHNSQ--FILMLER 528 (1590)
Q Consensus 515 A~R~gs~--~ivlv~~ 528 (1590)
.||.|.+ .+.++..
T Consensus 556 tGRaGr~G~sis~lt~ 571 (629)
T KOG0336|consen 556 TGRAGRTGTSISFLTR 571 (629)
T ss_pred cccCCCCcceEEEEeh
Confidence 9998875 4444444
|
|
| >COG1201 Lhr Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-27 Score=297.18 Aligned_cols=329 Identities=18% Similarity=0.184 Sum_probs=229.8
Q ss_pred CCCCcHHHHHHHHHHh-cCCEEEEeCCCChHHHHHHHHHHHHHHHHH--hCCCCeEEEEEecChhhHHHHHHHHHhh---
Q 000384 43 NFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIK--SNGFKKLIIFLAPTVHLVHQQYDVIRVH--- 116 (1590)
Q Consensus 43 ~~~pR~yQ~e~le~~~-~~n~Ii~~~TGsGKTliailli~~~l~~~~--~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~--- 116 (1590)
-..|++.|.++++.+. ++|++|.+|||||||.+|++++...+.... ....+-.+|+|.|.+||.+...+.++..
T Consensus 20 ~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~~~~~ 99 (814)
T COG1201 20 FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEEPLRE 99 (814)
T ss_pred cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHHHHHH
Confidence 4679999999999997 699999999999999999998887665331 1223467999999999999999888874
Q ss_pred cCCceEEEecCCCCCccchHHHHHhcCCCcEEEEcHHHHHHHHHhcC--cCccceeEEEEeccccccCCCcHHHH---HH
Q 000384 117 TDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAF--LSLDIVCFIVIDECHHATGNHPYTKI---MK 191 (1590)
Q Consensus 117 ~~~~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~~~--~~l~~i~lII~DEaH~~~~~~~~~~i---m~ 191 (1590)
+|+.+.+-+|++.... .-+...+-++|+++||+.|.-++.... -.+.++..+|+||.|.+..+....++ +.
T Consensus 100 ~G~~v~vRhGDT~~~e----r~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKRG~~Lsl~Le 175 (814)
T COG1201 100 LGIEVAVRHGDTPQSE----KQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKRGVQLALSLE 175 (814)
T ss_pred cCCccceecCCCChHH----hhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccccchhhhhhHH
Confidence 6899988999875432 223334568999999999987775432 23688999999999999866443333 22
Q ss_pred HHHhcCCCCCcEEEEeccCCccCCCCChhcHHHHHHHHHhhcCCe-----eEeecchhhhhhcccCcceeeEeccCCCCc
Q 000384 192 EFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQ-----VFTIEDKTEMEVFVPSAKESCRFYDQSKFC 266 (1590)
Q Consensus 192 ~~~~~~~~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~-----i~~~~~~~~l~~~~~~p~~~~~~y~~~~~~ 266 (1590)
++-.... .++++|||||... ...+...|... +..+.. .+..+..+.......
T Consensus 176 RL~~l~~-~~qRIGLSATV~~-------------~~~varfL~g~~~~~~Iv~~~~--------~k~~~i~v~~p~~~~- 232 (814)
T COG1201 176 RLRELAG-DFQRIGLSATVGP-------------PEEVAKFLVGFGDPCEIVDVSA--------AKKLEIKVISPVEDL- 232 (814)
T ss_pred HHHhhCc-ccEEEeehhccCC-------------HHHHHHHhcCCCCceEEEEccc--------CCcceEEEEecCCcc-
Confidence 2212223 7999999999652 12222222110 111100 000000000000000
Q ss_pred ccchhhhHHHhhhhhhhhHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHhHHHH
Q 000384 267 GSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEE 346 (1590)
Q Consensus 267 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~ 346 (1590)
. |.
T Consensus 233 ---------------------------------~--------------------------~~------------------ 235 (814)
T COG1201 233 ---------------------------------I--------------------------YD------------------ 235 (814)
T ss_pred ---------------------------------c--------------------------cc------------------
Confidence 0 00
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHhhhcCcchhhhccccCCccccccCCCCCHHHHHHHHHHHhcCCCCCcEEEEEEehHHH
Q 000384 347 CEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIA 426 (1590)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~t 426 (1590)
......-...+.+++++. ..++||+|+|.+
T Consensus 236 ---------------------------------------------~~~~~~~~~~i~~~v~~~-----~ttLIF~NTR~~ 265 (814)
T COG1201 236 ---------------------------------------------EELWAALYERIAELVKKH-----RTTLIFTNTRSG 265 (814)
T ss_pred ---------------------------------------------cchhHHHHHHHHHHHhhc-----CcEEEEEeChHH
Confidence 000011233344444433 269999999999
Q ss_pred HHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCceEEEEcccccccccCCCccEEEEccCCCCHH
Q 000384 427 AKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVS 506 (1590)
Q Consensus 427 a~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fD~p~s~~ 506 (1590)
|+.+...|++. ....+..-||+ ++.+.|.++.++|++|+++++|||+.+|-|||+..+++||+|..|.++.
T Consensus 266 aE~l~~~L~~~---~~~~i~~HHgS------lSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVIq~~SP~sV~ 336 (814)
T COG1201 266 AERLAFRLKKL---GPDIIEVHHGS------LSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVIQLGSPKSVN 336 (814)
T ss_pred HHHHHHHHHHh---cCCceeeeccc------ccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEEEEeCCcHHHH
Confidence 99999999885 22556667777 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccccccC---ceEEEEeccchHHhh
Q 000384 507 SYIQSRGRARQHN---SQFILMLERSERSVT 534 (1590)
Q Consensus 507 ~yiQr~GRA~R~g---s~~ivlv~~~E~~~~ 534 (1590)
.++||+||+|+.- |+.+++..+.++.++
T Consensus 337 r~lQRiGRsgHr~~~~Skg~ii~~~r~dllE 367 (814)
T COG1201 337 RFLQRIGRAGHRLGEVSKGIIIAEDRDDLLE 367 (814)
T ss_pred HHhHhccccccccCCcccEEEEecCHHHHHH
Confidence 9999999998743 566666655444443
|
|
| >KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-28 Score=268.40 Aligned_cols=316 Identities=21% Similarity=0.271 Sum_probs=222.4
Q ss_pred CCcHHHHHHHHHHhc---CCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhhcCC--
Q 000384 45 IPRIYQLKVFEVAKR---RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDF-- 119 (1590)
Q Consensus 45 ~pR~yQ~e~le~~~~---~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~~~-- 119 (1590)
.|...|..+++-++. +|.|..+-.|+|||.++++.+..... .....+.++.|+||++|+.|.-+++.....+
T Consensus 112 kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd---~~~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ 188 (477)
T KOG0332|consen 112 KPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVD---PDVVVPQCICLAPTRELAPQTGEVVEEMGKFTE 188 (477)
T ss_pred CcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcC---ccccCCCceeeCchHHHHHHHHHHHHHhcCcee
Confidence 478899999998874 89999999999999999886654322 2233455788999999999999999875433
Q ss_pred -ceEEEecCCCCCccchHHHHHhcCCCcEEEEcHHHHHHHHHh-cCcCccceeEEEEeccccccCCCcHHHHHHHHHhcC
Q 000384 120 -EVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK-AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS 197 (1590)
Q Consensus 120 -~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~-~~~~l~~i~lII~DEaH~~~~~~~~~~im~~~~~~~ 197 (1590)
++....-+... -+...-..+|++.||+.+++++.. ..+.+..+..+|+|||+++.....+...-...++..
T Consensus 189 ita~yair~sk~-------~rG~~i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~l 261 (477)
T KOG0332|consen 189 LTASYAIRGSKA-------KRGNKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSL 261 (477)
T ss_pred eeEEEEecCccc-------ccCCcchhheeeCCCccHHHHHHHHHhhChhhceEEEecchhhhhhcccccccchhhhhhc
Confidence 33222211111 011223568999999999999887 788899999999999999986544333222233344
Q ss_pred CCCCcEEEEeccCCccCCCCChhcHHHHHHHHHhhcCCeeEeecchhhhhhcccCcceeeEeccCCCCcccchhhhHHHh
Q 000384 198 DNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVS 277 (1590)
Q Consensus 198 ~~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~~~~~~~~l~~~~~~p~~~~~~y~~~~~~~~~l~~~~~~~ 277 (1590)
++..+.+..|||-... ... -..+.++.|....+.-+....
T Consensus 262 P~~~QllLFSATf~e~------------V~~----------------Fa~kivpn~n~i~Lk~eel~L------------ 301 (477)
T KOG0332|consen 262 PRNQQLLLFSATFVEK------------VAA----------------FALKIVPNANVIILKREELAL------------ 301 (477)
T ss_pred CCcceEEeeechhHHH------------HHH----------------HHHHhcCCCceeeeehhhccc------------
Confidence 5678899999994311 111 111222322221111000000
Q ss_pred hhhhhhhHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHhHHHHHHHHhhhhHHH
Q 000384 278 WSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQC 357 (1590)
Q Consensus 278 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (1590)
T Consensus 302 -------------------------------------------------------------------------------- 301 (477)
T KOG0332|consen 302 -------------------------------------------------------------------------------- 301 (477)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHhhhcCcchhhhccccCCccccccCCCCCHHHHHHHHHHHhcCCCCCcEEEEEEehHHHHHHHHHHHhhC
Q 000384 358 KYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKV 437 (1590)
Q Consensus 358 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~ 437 (1590)
..+.++.- .+ .....|...|.++..-. .-.+.||||.++.+|..|+..+..
T Consensus 302 --------~~IkQlyv-----~C------------~~~~~K~~~l~~lyg~~---tigqsiIFc~tk~ta~~l~~~m~~- 352 (477)
T KOG0332|consen 302 --------DNIKQLYV-----LC------------ACRDDKYQALVNLYGLL---TIGQSIIFCHTKATAMWLYEEMRA- 352 (477)
T ss_pred --------cchhhhee-----ec------------cchhhHHHHHHHHHhhh---hhhheEEEEeehhhHHHHHHHHHh-
Confidence 00000000 00 01145777777765432 234689999999999999999988
Q ss_pred CCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCceEEEEcccccccccCCCccEEEEccCCC------CHHHHHHH
Q 000384 438 PFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPK------TVSSYIQS 511 (1590)
Q Consensus 438 ~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fD~p~------s~~~yiQr 511 (1590)
.|..+..+||+ |...+|..++++||.|..+|||+|+|..+|||++.+++||+||+|- .+..|+||
T Consensus 353 ---~Gh~V~~l~G~------l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHR 423 (477)
T KOG0332|consen 353 ---EGHQVSLLHGD------LTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHR 423 (477)
T ss_pred ---cCceeEEeecc------chhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHH
Confidence 68899999999 9999999999999999999999999999999999999999999986 77899999
Q ss_pred hccccccCce--EEEEecc
Q 000384 512 RGRARQHNSQ--FILMLER 528 (1590)
Q Consensus 512 ~GRA~R~gs~--~ivlv~~ 528 (1590)
+||+||.|.+ .+-|+++
T Consensus 424 iGRtGRFGkkG~a~n~v~~ 442 (477)
T KOG0332|consen 424 IGRTGRFGKKGLAINLVDD 442 (477)
T ss_pred hcccccccccceEEEeecc
Confidence 9999999987 4445554
|
|
| >KOG4284 consensus DEAD box protein [Transcription] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.5e-28 Score=280.74 Aligned_cols=328 Identities=18% Similarity=0.271 Sum_probs=247.7
Q ss_pred CCCCCcHHHHHHHHHHh-cCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhh----
Q 000384 42 INFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVH---- 116 (1590)
Q Consensus 42 ~~~~pR~yQ~e~le~~~-~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~---- 116 (1590)
.-..|.+.|..+++.++ +-+.||.+-.|+|||+++..++.+-+. .......++|++||++++.|..+.|+..
T Consensus 44 ~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~---~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf 120 (980)
T KOG4284|consen 44 AFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLD---SRSSHIQKVIVTPTREIAVQIKETVRKVAPSF 120 (980)
T ss_pred cccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcC---cccCcceeEEEecchhhhhHHHHHHHHhcccc
Confidence 44578999999999987 589999999999999998776555432 3344556899999999999999999874
Q ss_pred cCCceEEEecCCCCCccchHHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCCCcHHHHHHHHHhc
Q 000384 117 TDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHK 196 (1590)
Q Consensus 117 ~~~~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~~~~~~im~~~~~~ 196 (1590)
.|+++.++.|+..... -...+..++|+|+||+.+..++..+.+.+..++|+|+|||+.+.....+...+..++..
T Consensus 121 ~g~~csvfIGGT~~~~-----d~~rlk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADkL~~t~sfq~~In~ii~s 195 (980)
T KOG4284|consen 121 TGARCSVFIGGTAHKL-----DLIRLKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADKLMDTESFQDDINIIINS 195 (980)
T ss_pred cCcceEEEecCchhhh-----hhhhhhhceEEecCchHHHHHHHhcCCCccceeEEEeccHHhhhchhhHHHHHHHHHHh
Confidence 5899999999886542 12345688999999999999999999999999999999999998877888877777777
Q ss_pred CCCCCcEEEEeccCCccCCCCChhcHHHHHHHHHhhcCCeeEeecchhhhhhcccCcceeeEeccCCCCcccchhhhHHH
Q 000384 197 SDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEV 276 (1590)
Q Consensus 197 ~~~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~~~~~~~~l~~~~~~p~~~~~~y~~~~~~~~~l~~~~~~ 276 (1590)
.+...+++..|||--++ +.++ +.+++..|......-+ .....+|++.+..
T Consensus 196 lP~~rQv~a~SATYp~n------------Ldn~----------------Lsk~mrdp~lVr~n~~--d~~L~GikQyv~~ 245 (980)
T KOG4284|consen 196 LPQIRQVAAFSATYPRN------------LDNL----------------LSKFMRDPALVRFNAD--DVQLFGIKQYVVA 245 (980)
T ss_pred cchhheeeEEeccCchh------------HHHH----------------HHHHhcccceeecccC--Cceeechhheeee
Confidence 88888999999994322 1111 2222222221111100 0000011110000
Q ss_pred hhhhhhhhHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHhHHHHHHHHhhhhHH
Q 000384 277 SWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQ 356 (1590)
Q Consensus 277 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (1590)
..+. .
T Consensus 246 ~~s~-------------------n-------------------------------------------------------- 250 (980)
T KOG4284|consen 246 KCSP-------------------N-------------------------------------------------------- 250 (980)
T ss_pred ccCC-------------------c--------------------------------------------------------
Confidence 0000 0
Q ss_pred HHHHHHHHHHHHhhhcCcchhhhccccCCccccccCCCCCHHHHHHHHHHHhcCCCCCcEEEEEEehHHHHHHHHHHHhh
Q 000384 357 CKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKK 436 (1590)
Q Consensus 357 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~ 436 (1590)
........|++.|-+++... +-.++||||+....|+-++..|..
T Consensus 251 ---------------------------------nsveemrlklq~L~~vf~~i---py~QAlVF~~~~sra~~~a~~L~s 294 (980)
T KOG4284|consen 251 ---------------------------------NSVEEMRLKLQKLTHVFKSI---PYVQALVFCDQISRAEPIATHLKS 294 (980)
T ss_pred ---------------------------------chHHHHHHHHHHHHHHHhhC---chHHHHhhhhhhhhhhHHHHHhhc
Confidence 00000022555555555543 245799999999999999999988
Q ss_pred CCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCceEEEEcccccccccCCCccEEEEccCCCCHHHHHHHhcccc
Q 000384 437 VPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRAR 516 (1590)
Q Consensus 437 ~~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fD~p~s~~~yiQr~GRA~ 516 (1590)
.|+.+.++.|. |++++|..+++++|+-.++|||+|+...+|||-+.+|+||+.|.|.+-..|.||+||||
T Consensus 295 ----sG~d~~~ISga------M~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAg 364 (980)
T KOG4284|consen 295 ----SGLDVTFISGA------MSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAG 364 (980)
T ss_pred ----cCCCeEEeccc------cchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEEecCCCcchHHHHHHhhhcc
Confidence 79999999998 99999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCce--EEEEecc
Q 000384 517 QHNSQ--FILMLER 528 (1590)
Q Consensus 517 R~gs~--~ivlv~~ 528 (1590)
|.|+. .|.++++
T Consensus 365 RFG~~G~aVT~~~~ 378 (980)
T KOG4284|consen 365 RFGAHGAAVTLLED 378 (980)
T ss_pred cccccceeEEEecc
Confidence 99987 5555554
|
|
| >KOG0346 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.2e-27 Score=263.37 Aligned_cols=325 Identities=22% Similarity=0.291 Sum_probs=232.6
Q ss_pred CCCCCcHHHHHHHHHHh-cCCEEEEeCCCChHHHHHHHHHHHHHHHHH---hCCCCeEEEEEecChhhHHHHHHHHHhhc
Q 000384 42 INFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIK---SNGFKKLIIFLAPTVHLVHQQYDVIRVHT 117 (1590)
Q Consensus 42 ~~~~pR~yQ~e~le~~~-~~n~Ii~~~TGsGKTliailli~~~l~~~~---~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~ 117 (1590)
.--.|.-.|..+++-++ ++|++.-+.||||||.++++++.+.+-..+ ....+..+++||||++|+.|.+.+|.+..
T Consensus 38 G~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQvy~viekL~ 117 (569)
T KOG0346|consen 38 GWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQVYKVIEKLV 117 (569)
T ss_pred CcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechHHHHHHHHHHHHHHH
Confidence 34568899999999998 589999999999999999998877553222 23345679999999999999999999853
Q ss_pred -----CCceEEEecCCCCCccchHHHHHhcCCCcEEEEcHHHHHHHHHhcC-cCccceeEEEEeccccccCCCcHHHHHH
Q 000384 118 -----DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAF-LSLDIVCFIVIDECHHATGNHPYTKIMK 191 (1590)
Q Consensus 118 -----~~~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~~~-~~l~~i~lII~DEaH~~~~~~~~~~im~ 191 (1590)
.+++.-++.+++... ......+.++|+|+||..++.++..+. ..++.+.++|+|||+.+... .|..-|+
T Consensus 118 ~~c~k~lr~~nl~s~~sdsv----~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDEADLllsf-GYeedlk 192 (569)
T KOG0346|consen 118 EYCSKDLRAINLASSMSDSV----NSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDEADLLLSF-GYEEDLK 192 (569)
T ss_pred HHHHHhhhhhhhhcccchHH----HHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEechhhhhhhc-ccHHHHH
Confidence 355655665544221 123455789999999999999999887 67789999999999998775 7888888
Q ss_pred HHHhcCCCCCcEEEEeccCCccCCCCChhcHHHHHHHHHhhcC-C-eeEeecchhhhhhcccCcceeeEeccCCCCcccc
Q 000384 192 EFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLD-S-QVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSD 269 (1590)
Q Consensus 192 ~~~~~~~~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~-~-~i~~~~~~~~l~~~~~~p~~~~~~y~~~~~~~~~ 269 (1590)
......++.-+-|+||||.. ..+..|..++. . .+...++.+. +.|.
T Consensus 193 ~l~~~LPr~~Q~~LmSATl~------------dDv~~LKkL~l~nPviLkl~e~el-----~~~d--------------- 240 (569)
T KOG0346|consen 193 KLRSHLPRIYQCFLMSATLS------------DDVQALKKLFLHNPVILKLTEGEL-----PNPD--------------- 240 (569)
T ss_pred HHHHhCCchhhheeehhhhh------------hHHHHHHHHhccCCeEEEeccccC-----CCcc---------------
Confidence 77666676777799999954 22344443321 1 1111111100 0000
Q ss_pred hhhhHHHhhhhhhhhHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHhHHHHHHH
Q 000384 270 LKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEI 349 (1590)
Q Consensus 270 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~ 349 (1590)
.+...|..++
T Consensus 241 ---qL~Qy~v~cs------------------------------------------------------------------- 250 (569)
T KOG0346|consen 241 ---QLTQYQVKCS------------------------------------------------------------------- 250 (569)
T ss_pred ---cceEEEEEec-------------------------------------------------------------------
Confidence 0000000000
Q ss_pred HhhhhHHHHHHHHHHHHHHhhhcCcchhhhccccCCccccccCCCCCHHHHHHHHHHHhcCCCCCcEEEEEEehHHHHHH
Q 000384 350 YRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKV 429 (1590)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~ta~~ 429 (1590)
-.+|+..+..+|+-- --..+.|||||+.+.+..
T Consensus 251 ---------------------------------------------e~DKflllyallKL~--LI~gKsliFVNtIdr~Yr 283 (569)
T KOG0346|consen 251 ---------------------------------------------EEDKFLLLYALLKLR--LIRGKSLIFVNTIDRCYR 283 (569)
T ss_pred ---------------------------------------------cchhHHHHHHHHHHH--HhcCceEEEEechhhhHH
Confidence 012333333322210 012479999999999999
Q ss_pred HHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCceEEEEcc---------------------------
Q 000384 430 VERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATD--------------------------- 482 (1590)
Q Consensus 430 L~~~L~~~~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~~vLVaT~--------------------------- 482 (1590)
|.-+|.+ -|++...+.|. |+...|..++++|..|-..++|||+
T Consensus 284 LkLfLeq----FGiksciLNse------LP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkks 353 (569)
T KOG0346|consen 284 LKLFLEQ----FGIKSCILNSE------LPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKS 353 (569)
T ss_pred HHHHHHH----hCcHhhhhccc------ccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCcccc
Confidence 9999988 37888888888 9999999999999999999999999
Q ss_pred --------cccccccCCCccEEEEccCCCCHHHHHHHhccccccCce--EEEEeccch
Q 000384 483 --------VIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQ--FILMLERSE 530 (1590)
Q Consensus 483 --------vleeGIDip~~~~VI~fD~p~s~~~yiQr~GRA~R~gs~--~ivlv~~~E 530 (1590)
-..+|||+..+++||+||+|.++.+||||+||++|.+.+ .+-++...|
T Consensus 354 kkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e 411 (569)
T KOG0346|consen 354 KKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKE 411 (569)
T ss_pred ccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchH
Confidence 124799999999999999999999999999999998865 334444433
|
|
| >PRK09751 putative ATP-dependent helicase Lhr; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.9e-27 Score=312.88 Aligned_cols=313 Identities=19% Similarity=0.218 Sum_probs=197.8
Q ss_pred EEeCCCChHHHHHHHHHHHHHHHHH-------hCCCCeEEEEEecChhhHHHHHHHHHh---------------hcCCce
Q 000384 64 AVLETGAGKTMIAVMLIKDIAQAIK-------SNGFKKLIIFLAPTVHLVHQQYDVIRV---------------HTDFEV 121 (1590)
Q Consensus 64 i~~~TGsGKTliailli~~~l~~~~-------~~~~~~~vl~LvPt~~Lv~Qq~~~i~~---------------~~~~~v 121 (1590)
|++|||||||++|.+++...+.... ....+.++|||+|+++|+.|+.+.++. ..+++|
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 5799999999999996554432111 012346799999999999999998864 246889
Q ss_pred EEEecCCCCCccchHHHHHhcCCCcEEEEcHHHHHHHHHhc-CcCccceeEEEEeccccccCCC---cHHHHHHHHHhcC
Q 000384 122 EEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA-FLSLDIVCFIVIDECHHATGNH---PYTKIMKEFYHKS 197 (1590)
Q Consensus 122 ~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~~-~~~l~~i~lII~DEaH~~~~~~---~~~~im~~~~~~~ 197 (1590)
...+|+...+. .++...+.++|+|+||+.|..++.+. ...+.++++||+||+|.+.+.. .+...+..+....
T Consensus 81 ~vrtGDt~~~e----R~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~ 156 (1490)
T PRK09751 81 GIRTGDTPAQE----RSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALL 156 (1490)
T ss_pred EEEECCCCHHH----HHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhC
Confidence 99999876543 22223357899999999998887643 3357999999999999998642 2344454444444
Q ss_pred CCCCcEEEEeccCCccCCCCChhcHHHHHHHHHhhcCC--eeEeecchhhhhhcccCcceeeEeccCCCCcccchhhhHH
Q 000384 198 DNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDS--QVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLE 275 (1590)
Q Consensus 198 ~~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~--~i~~~~~~~~l~~~~~~p~~~~~~y~~~~~~~~~l~~~~~ 275 (1590)
...++++|||||..+. ..+...|.. .+..+... ..++....+....... .
T Consensus 157 ~~~~QrIgLSATI~n~-------------eevA~~L~g~~pv~Iv~~~------~~r~~~l~v~vp~~d~---------~ 208 (1490)
T PRK09751 157 HTSAQRIGLSATVRSA-------------SDVAAFLGGDRPVTVVNPP------AMRHPQIRIVVPVANM---------D 208 (1490)
T ss_pred CCCCeEEEEEeeCCCH-------------HHHHHHhcCCCCEEEECCC------CCcccceEEEEecCch---------h
Confidence 5668999999996431 122222321 00000000 0000000000000000 0
Q ss_pred HhhhhhhhhHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHhHHHHHHHHhhhhH
Q 000384 276 VSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSL 355 (1590)
Q Consensus 276 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (1590)
.+.... ...+ . .
T Consensus 209 -------------------~~~~~~---------------------~~~~----------------------~---~--- 220 (1490)
T PRK09751 209 -------------------DVSSVA---------------------SGTG----------------------E---D--- 220 (1490)
T ss_pred -------------------hccccc---------------------cccc----------------------c---c---
Confidence 000000 0000 0 0
Q ss_pred HHHHHHHHHHHHHhhhcCcchhhhccccCCccccccCCCCCHHH-HHHHHHHHhcCCCCCcEEEEEEehHHHHHHHHHHH
Q 000384 356 QCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKL-HELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFV 434 (1590)
Q Consensus 356 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~-~~L~~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L 434 (1590)
.. ........+.+ ..+++.+. ...++||||++|..|+.+...|
T Consensus 221 ---~~----------------------------~~r~~~i~~~v~~~il~~i~-----~~~stLVFvNSR~~AE~La~~L 264 (1490)
T PRK09751 221 ---SH----------------------------AGREGSIWPYIETGILDEVL-----RHRSTIVFTNSRGLAEKLTARL 264 (1490)
T ss_pred ---cc----------------------------hhhhhhhhHHHHHHHHHHHh-----cCCCEEEECCCHHHHHHHHHHH
Confidence 00 00000000011 12222222 2357999999999999999888
Q ss_pred hhCCC---------------C--------------CCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCceEEEEccccc
Q 000384 435 KKVPF---------------L--------------THLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIE 485 (1590)
Q Consensus 435 ~~~~~---------------~--------------~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~~vLVaT~vle 485 (1590)
++... + ....+..+||+ |++++|..++++|++|++++||||++++
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGs------LSkeeR~~IE~~fK~G~LrvLVATssLE 338 (1490)
T PRK09751 265 NELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGS------VSKEQRAITEQALKSGELRCVVATSSLE 338 (1490)
T ss_pred HHhhhhhccccccccchhhhhhhccccchhccccccceeeeecccc------CCHHHHHHHHHHHHhCCceEEEeCcHHH
Confidence 76310 0 01224456676 9999999999999999999999999999
Q ss_pred ccccCCCccEEEEccCCCCHHHHHHHhcccccc
Q 000384 486 EGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQH 518 (1590)
Q Consensus 486 eGIDip~~~~VI~fD~p~s~~~yiQr~GRA~R~ 518 (1590)
.||||+++++||+||.|.+..+|+||+|||||.
T Consensus 339 LGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~ 371 (1490)
T PRK09751 339 LGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQ 371 (1490)
T ss_pred ccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCC
Confidence 999999999999999999999999999999996
|
|
| >COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.9e-27 Score=283.79 Aligned_cols=314 Identities=18% Similarity=0.268 Sum_probs=223.5
Q ss_pred CCcHHHHHHHHHHh-cCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhhcCCceEE
Q 000384 45 IPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEE 123 (1590)
Q Consensus 45 ~pR~yQ~e~le~~~-~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~~~~v~~ 123 (1590)
..|+-|.++++.++ ++|+|+.+|||.||++++.++..-+ .+.+|||.|..+|...|.+.++.. |+.+..
T Consensus 17 ~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~---------~G~TLVVSPLiSLM~DQV~~l~~~-Gi~A~~ 86 (590)
T COG0514 17 SFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL---------EGLTLVVSPLISLMKDQVDQLEAA-GIRAAY 86 (590)
T ss_pred ccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc---------CCCEEEECchHHHHHHHHHHHHHc-Cceeeh
Confidence 46889999999998 5999999999999999999875532 236899999999999999999977 688888
Q ss_pred EecCCCCCccchHHHHHhc-CCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCC-CcHHHHHHHH--HhcCCC
Q 000384 124 YYGAKGVDEWDSQCWQKEI-NKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGN-HPYTKIMKEF--YHKSDN 199 (1590)
Q Consensus 124 ~~G~~~~d~~~~~~w~~~~-~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~-~~~~~im~~~--~~~~~~ 199 (1590)
+.+..+.++|. ..|.... ...+++..+|+.|..-.-...+....+.++|+||||++..| |.|+.-.... ++..-+
T Consensus 87 lnS~l~~~e~~-~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~~~ 165 (590)
T COG0514 87 LNSTLSREERQ-QVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLRAGLP 165 (590)
T ss_pred hhcccCHHHHH-HHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHHHHhhCC
Confidence 88877666543 3334333 45899999999986543333444677899999999999987 5554433332 122234
Q ss_pred CCcEEEEeccCCccCCCCChhcHHHHHHHHHhhcCCeeEeecchhhhhhcccCcceeeEeccCCCCcccchhhhHHHhhh
Q 000384 200 KPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWS 279 (1590)
Q Consensus 200 ~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~~~~~~~~l~~~~~~p~~~~~~y~~~~~~~~~l~~~~~~~~~ 279 (1590)
.+.+++||||-... ...++...|...-. ..+...+.+|+ ++|.. .
T Consensus 166 ~~p~~AlTATA~~~-----------v~~DI~~~L~l~~~-----~~~~~sfdRpN---i~~~v------------~---- 210 (590)
T COG0514 166 NPPVLALTATATPR-----------VRDDIREQLGLQDA-----NIFRGSFDRPN---LALKV------------V---- 210 (590)
T ss_pred CCCEEEEeCCCChH-----------HHHHHHHHhcCCCc-----ceEEecCCCch---hhhhh------------h----
Confidence 78999999985421 12333333321100 00000000000 00000 0
Q ss_pred hhhhhHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHhHHHHHHHHhhhhHHHHH
Q 000384 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKY 359 (1590)
Q Consensus 280 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (1590)
T Consensus 211 -------------------------------------------------------------------------------- 210 (590)
T COG0514 211 -------------------------------------------------------------------------------- 210 (590)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhhhcCcchhhhccccCCccccccCCCCCHHHHHHHHHHHhcCCCCCcEEEEEEehHHHHHHHHHHHhhCCC
Q 000384 360 FLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPF 439 (1590)
Q Consensus 360 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~ 439 (1590)
. ......++..+.+ .....+..+||||.+|..++.+++.|..
T Consensus 211 ----------~---------------------~~~~~~q~~fi~~----~~~~~~~~GIIYc~sRk~~E~ia~~L~~--- 252 (590)
T COG0514 211 ----------E---------------------KGEPSDQLAFLAT----VLPQLSKSGIIYCLTRKKVEELAEWLRK--- 252 (590)
T ss_pred ----------h---------------------cccHHHHHHHHHh----hccccCCCeEEEEeeHHhHHHHHHHHHH---
Confidence 0 0000001111111 0112344689999999999999999998
Q ss_pred CCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCceEEEEcccccccccCCCccEEEEccCCCCHHHHHHHhccccccC
Q 000384 440 LTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHN 519 (1590)
Q Consensus 440 ~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fD~p~s~~~yiQr~GRA~R~g 519 (1590)
.++.+..+||+ |+.++|+.+.++|..+++.|+|||.+.+.|||-|++..|||||+|.|+.+|.|-.|||||.|
T Consensus 253 -~g~~a~~YHaG------l~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG 325 (590)
T COG0514 253 -NGISAGAYHAG------LSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDG 325 (590)
T ss_pred -CCCceEEecCC------CCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCC
Confidence 58999999998 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred ce--EEEEeccc
Q 000384 520 SQ--FILMLERS 529 (1590)
Q Consensus 520 s~--~ivlv~~~ 529 (1590)
.. .+++....
T Consensus 326 ~~a~aill~~~~ 337 (590)
T COG0514 326 LPAEAILLYSPE 337 (590)
T ss_pred CcceEEEeeccc
Confidence 65 45554443
|
|
| >TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-26 Score=292.29 Aligned_cols=302 Identities=18% Similarity=0.235 Sum_probs=198.1
Q ss_pred CCCCcHHHHHHHHHHhc-C-CEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhhc---
Q 000384 43 NFIPRIYQLKVFEVAKR-R-NTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT--- 117 (1590)
Q Consensus 43 ~~~pR~yQ~e~le~~~~-~-n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~--- 117 (1590)
.|+|+|||.++++.++. + ++++.+|||||||.++..++..+.. .....++++|+|||++|+.|.+++++++.
T Consensus 13 G~~PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~~---~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l 89 (844)
T TIGR02621 13 GYSPFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVEI---GAKVPRRLVYVVNRRTVVDQVTEEAEKIGERL 89 (844)
T ss_pred CCCCCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccccc---cccccceEEEeCchHHHHHHHHHHHHHHHHHh
Confidence 46699999999999985 4 5778899999999865433332211 12234467778899999999999998754
Q ss_pred -----------------------CCceEEEecCCCCCccchHHHHHhcCCCcEEEEcHHHHHHHHHhcCc----------
Q 000384 118 -----------------------DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL---------- 164 (1590)
Q Consensus 118 -----------------------~~~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~~~~---------- 164 (1590)
++++..++|+...+ ..|...-.+++|+|+|++.+ .++.+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~----~q~~~l~~~p~IIVgT~D~i----~sr~L~~gYg~~~~~ 161 (844)
T TIGR02621 90 PDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADN----DEWMLDPHRPAVIVGTVDMI----GSRLLFSGYGCGFKS 161 (844)
T ss_pred cccchhhhhhhhhhccccccccCCeEEEEEECCCChH----HHHHhcCCCCcEEEECHHHH----cCCcccccccccccc
Confidence 26788889987643 45777778899999996544 33333
Q ss_pred ------CccceeEEEEeccccccCCCcHHHHHHHHHhcC--CC---CCcEEEEeccCCccCCCCChhcHHHHHHHHHhhc
Q 000384 165 ------SLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS--DN---KPKVFGMTASPVVRKGVSSAMDCEGQISELESTL 233 (1590)
Q Consensus 165 ------~l~~i~lII~DEaH~~~~~~~~~~im~~~~~~~--~~---~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l 233 (1590)
.+.++.+||+||||.. ..|...+..+.... .. ..++++||||+-.. +..+...+
T Consensus 162 ~pi~ag~L~~v~~LVLDEADLd---~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~e------------i~~l~~~~ 226 (844)
T TIGR02621 162 RPLHAGFLGQDALIVHDEAHLE---PAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTD------------GPDRTTLL 226 (844)
T ss_pred ccchhhhhccceEEEEehhhhc---cccHHHHHHHHHhcccCcccccceEEEEecCCCcc------------HHHHHHHH
Confidence 2678999999999932 24666666655532 22 14799999997421 11121111
Q ss_pred CCeeEeecchhhhhhcccCcceeeEeccCCCCcccchhhhHHHhhhhhhhhHHHHHhhhhhhhccchhhHHHHHHHHHHH
Q 000384 234 DSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDY 313 (1590)
Q Consensus 234 ~~~i~~~~~~~~l~~~~~~p~~~~~~y~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 313 (1590)
...-+.. ........... +.. |.....
T Consensus 227 ~~~p~~i---~V~~~~l~a~k--i~q------------------------------------~v~v~~------------ 253 (844)
T TIGR02621 227 SAEDYKH---PVLKKRLAAKK--IVK------------------------------------LVPPSD------------ 253 (844)
T ss_pred ccCCcee---ecccccccccc--eEE------------------------------------EEecCh------------
Confidence 1000000 00000000000 000 000000
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhHhHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcCcchhhhccccCCccccccCC
Q 000384 314 HAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLG 393 (1590)
Q Consensus 314 ~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (1590)
..
T Consensus 254 ------------------------------------------------------------------------------e~ 255 (844)
T TIGR02621 254 ------------------------------------------------------------------------------EK 255 (844)
T ss_pred ------------------------------------------------------------------------------HH
Confidence 00
Q ss_pred CCCHHHHHHHHHHHhcCCCCCcEEEEEEehHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHH-----HHHH
Q 000384 394 YISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQK-----EVLE 468 (1590)
Q Consensus 394 ~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~~~~~~r~-----~vl~ 468 (1590)
....++..+..++. ..+.++||||+++..+..|++.|... ++ ..+||. |++.+|. ++++
T Consensus 256 Kl~~lv~~L~~ll~----e~g~~vLVF~NTv~~Aq~L~~~L~~~----g~--~lLHG~------m~q~dR~~~~~~~il~ 319 (844)
T TIGR02621 256 FLSTMVKELNLLMK----DSGGAILVFCRTVKHVRKVFAKLPKE----KF--ELLTGT------LRGAERDDLVKKEIFN 319 (844)
T ss_pred HHHHHHHHHHHHHh----hCCCcEEEEECCHHHHHHHHHHHHhc----CC--eEeeCC------CCHHHHhhHHHHHHHH
Confidence 00001111112221 23458999999999999999999873 33 789999 9999999 8899
Q ss_pred HhcC----CC-------ceEEEEcccccccccCCCccEEEEccCCCCHHHHHHHhccccccCc
Q 000384 469 SFRG----GK-------VNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNS 520 (1590)
Q Consensus 469 ~Fr~----g~-------~~vLVaT~vleeGIDip~~~~VI~fD~p~s~~~yiQr~GRA~R~gs 520 (1590)
+|++ |. .+|||||+++|+||||+. ++||+++.| ..+|+||+||++|.|.
T Consensus 320 ~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~ 379 (844)
T TIGR02621 320 RFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGE 379 (844)
T ss_pred HHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCC
Confidence 9987 54 789999999999999986 899998766 6899999999999886
|
This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs. |
| >COG1204 Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-26 Score=295.32 Aligned_cols=320 Identities=21% Similarity=0.280 Sum_probs=217.3
Q ss_pred CCcHHHHHHHHHHh--cCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHH--hhcCCc
Q 000384 45 IPRIYQLKVFEVAK--RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIR--VHTDFE 120 (1590)
Q Consensus 45 ~pR~yQ~e~le~~~--~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~--~~~~~~ 120 (1590)
++.+.|+++++... ++|+||++|||||||++|.+.|...+. ..+.+++++||+++|+.|.+++++ ..+|++
T Consensus 31 el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~-----~~~~k~vYivPlkALa~Ek~~~~~~~~~~Gir 105 (766)
T COG1204 31 ELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLL-----EGGGKVVYIVPLKALAEEKYEEFSRLEELGIR 105 (766)
T ss_pred HhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHH-----hcCCcEEEEeChHHHHHHHHHHhhhHHhcCCE
Confidence 88999999998876 489999999999999999998887665 125669999999999999999999 568999
Q ss_pred eEEEecCCCCCccchHHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCCC--c-HHHHHHHHHhcC
Q 000384 121 VEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNH--P-YTKIMKEFYHKS 197 (1590)
Q Consensus 121 v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~~--~-~~~im~~~~~~~ 197 (1590)
|...+|+...+. ..+.+++|+|+|||.+...+++....+..+++||+||+|.+.+.. + .-.|... .+..
T Consensus 106 V~~~TgD~~~~~-------~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r-~~~~ 177 (766)
T COG1204 106 VGISTGDYDLDD-------ERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLESIVAR-MRRL 177 (766)
T ss_pred EEEecCCcccch-------hhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCceehhHHHH-HHhh
Confidence 999999876442 345689999999999999998887788999999999999997652 2 2222222 1222
Q ss_pred CCCCcEEEEeccCCccCCCCChhcHHHHHHHHHhhcCCeeEeecchhhhhhcccCcceeeEeccCCCCcccchhhhHHHh
Q 000384 198 DNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVS 277 (1590)
Q Consensus 198 ~~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~~~~~~~~l~~~~~~p~~~~~~y~~~~~~~~~l~~~~~~~ 277 (1590)
....||+|||||..+ ..++-..+++..... .+.+.|-...+.|...-.
T Consensus 178 ~~~~rivgLSATlpN-------------~~evA~wL~a~~~~~-------~~rp~~l~~~v~~~~~~~------------ 225 (766)
T COG1204 178 NELIRIVGLSATLPN-------------AEEVADWLNAKLVES-------DWRPVPLRRGVPYVGAFL------------ 225 (766)
T ss_pred CcceEEEEEeeecCC-------------HHHHHHHhCCccccc-------CCCCcccccCCccceEEE------------
Confidence 334899999999653 234455555432200 000000000000000000
Q ss_pred hhhhhhhHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHhHHHHHHHHhhhhHHH
Q 000384 278 WSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQC 357 (1590)
Q Consensus 278 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (1590)
......+
T Consensus 226 --------------------~~~~~~k----------------------------------------------------- 232 (766)
T COG1204 226 --------------------GADGKKK----------------------------------------------------- 232 (766)
T ss_pred --------------------EecCccc-----------------------------------------------------
Confidence 0000000
Q ss_pred HHHHHHHHHHHhhhcCcchhhhccccCCccccccCCCCCHHHHHHHH-HHHhcCCCCCcEEEEEEehHHHHHHHHHHHhh
Q 000384 358 KYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQ-LFLSFGKSTQVLCIIFVERIIAAKVVERFVKK 436 (1590)
Q Consensus 358 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~-lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~ 436 (1590)
.+...+-...++ ++... ..+.+++|||++|..+...++.+..
T Consensus 233 -----------------------------------~~~~~~~~~~~~~v~~~~--~~~~qvLvFv~sR~~a~~~A~~l~~ 275 (766)
T COG1204 233 -----------------------------------TWPLLIDNLALELVLESL--AEGGQVLVFVHSRKEAEKTAKKLRI 275 (766)
T ss_pred -----------------------------------cccccchHHHHHHHHHHH--hcCCeEEEEEecCchHHHHHHHHHH
Confidence 000000011111 11111 3456899999999888777777662
Q ss_pred ----CC------CCC----Cee-------------EEEEEcCCCCCCCCCHHHHHHHHHHhcCCCceEEEEccccccccc
Q 000384 437 ----VP------FLT----HLT-------------VAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMH 489 (1590)
Q Consensus 437 ----~~------~~~----~~~-------------~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~~vLVaT~vleeGID 489 (1590)
.. ... .+. -....|.+.++.+|+.++|.-+.+.||.|.++||+||+.+..|+|
T Consensus 276 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVN 355 (766)
T COG1204 276 KMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVN 355 (766)
T ss_pred HHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcC
Confidence 10 000 000 111234445667899999999999999999999999999999999
Q ss_pred CCCccEEE----Ecc-----CCCCHHHHHHHhccccccC
Q 000384 490 VPNCSYVI----RFD-----LPKTVSSYIQSRGRARQHN 519 (1590)
Q Consensus 490 ip~~~~VI----~fD-----~p~s~~~yiQr~GRA~R~g 519 (1590)
+|+=.+|| +|| .+-+.-.++|+.|||||.|
T Consensus 356 LPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg 394 (766)
T COG1204 356 LPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPG 394 (766)
T ss_pred CcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCC
Confidence 99877776 577 5568889999999999987
|
|
| >PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-26 Score=303.85 Aligned_cols=351 Identities=19% Similarity=0.287 Sum_probs=206.1
Q ss_pred CCCCcHHHHHHHHHHh------cCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhh
Q 000384 43 NFIPRIYQLKVFEVAK------RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVH 116 (1590)
Q Consensus 43 ~~~pR~yQ~e~le~~~------~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~ 116 (1590)
.+.+|+||.++++.+. +++++|+++||||||++++.++..++. .+..++||||||+.+|+.|+.+.|+.+
T Consensus 411 ~~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~----~~~~~rVLfLvDR~~L~~Qa~~~F~~~ 486 (1123)
T PRK11448 411 GLGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLK----AKRFRRILFLVDRSALGEQAEDAFKDT 486 (1123)
T ss_pred CCCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHh----cCccCeEEEEecHHHHHHHHHHHHHhc
Confidence 4689999999998774 267999999999999999988887765 234467999999999999999999976
Q ss_pred cCC---ceEEEecCCCCCccchHHHHHhcCCCcEEEEcHHHHHHHHHhc-----CcCccceeEEEEeccccccCC-----
Q 000384 117 TDF---EVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA-----FLSLDIVCFIVIDECHHATGN----- 183 (1590)
Q Consensus 117 ~~~---~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~~-----~~~l~~i~lII~DEaH~~~~~----- 183 (1590)
... .+..+++...... ...-...+|+|+|+|.|.+.+... ...+.++++||+|||||....
T Consensus 487 ~~~~~~~~~~i~~i~~L~~------~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~ 560 (1123)
T PRK11448 487 KIEGDQTFASIYDIKGLED------KFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMS 560 (1123)
T ss_pred ccccccchhhhhchhhhhh------hcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccc
Confidence 311 1111222111000 001235799999999998765321 245688999999999997421
Q ss_pred -------------CcHHHHHHHHHhcCCCCCcEEEEeccCCccCCCCChhcHHHHHHHHHhhcCCeeEeecchhhhhh-c
Q 000384 184 -------------HPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEV-F 249 (1590)
Q Consensus 184 -------------~~~~~im~~~~~~~~~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~~~~~~~~l~~-~ 249 (1590)
..|+.++..| ...+|||||||.... ...++..++..+-.+.+.. +
T Consensus 561 ~~~~~~~~~~~~~~~yr~iL~yF------dA~~IGLTATP~r~t---------------~~~FG~pv~~Ysl~eAI~DG~ 619 (1123)
T PRK11448 561 EGELQFRDQLDYVSKYRRVLDYF------DAVKIGLTATPALHT---------------TEIFGEPVYTYSYREAVIDGY 619 (1123)
T ss_pred cchhccchhhhHHHHHHHHHhhc------CccEEEEecCCccch---------------hHHhCCeeEEeeHHHHHhcCC
Confidence 2455665533 367899999997432 2233444554443333322 2
Q ss_pred ccCcceeeEeccCCCCcccchhhhHHHhhhhhhhhHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 000384 250 VPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICA 329 (1590)
Q Consensus 250 ~~~p~~~~~~y~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~a 329 (1590)
+... +....|.. .+...++.-.-.. ....|..... .+.. ..+
T Consensus 620 Lv~~-~~p~~i~t-~~~~~gi~~~~~e---------------~~~~~~~~~~-------~i~~---------~~l----- 661 (1123)
T PRK11448 620 LIDH-EPPIRIET-RLSQEGIHFEKGE---------------EVEVINTQTG-------EIDL---------ATL----- 661 (1123)
T ss_pred cccC-cCCEEEEE-Eeccccccccccc---------------hhhhcchhhh-------hhhh---------ccC-----
Confidence 2111 00011110 0000000000000 0000000000 0000 000
Q ss_pred HHHHHHHHHHhHhHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcCcchhhhccccCCccccccCCCCCHHHHHHHHHHHhc
Q 000384 330 YEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSF 409 (1590)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~ 409 (1590)
. ++.. + ....+...+. .. . ....-+..+.+.+..
T Consensus 662 -----------~---d~~~-~-----~~~~~~~~vi---~~-----~-----------------~~~~i~~~l~~~l~~- 695 (1123)
T PRK11448 662 -----------E---DEVD-F-----EVEDFNRRVI---TE-----S-----------------FNRVVCEELAKYLDP- 695 (1123)
T ss_pred -----------c---HHHh-h-----hHHHHHHHHh---hH-----H-----------------HHHHHHHHHHHHHhc-
Confidence 0 0000 0 0000000000 00 0 000011222333322
Q ss_pred CCCCCcEEEEEEehHHHHHHHHHHHhhC-----CCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCc-eEEEEccc
Q 000384 410 GKSTQVLCIIFVERIIAAKVVERFVKKV-----PFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKV-NLLFATDV 483 (1590)
Q Consensus 410 ~~~~~~k~IIFv~~r~ta~~L~~~L~~~-----~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~-~vLVaT~v 483 (1590)
..+.++||||.++.+|..+.+.|... +...+..+..++|. + .++.+++++|+++.. +|+|++++
T Consensus 696 --~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~------~--~~~~~li~~Fk~~~~p~IlVsvdm 765 (1123)
T PRK11448 696 --TGEGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGS------I--DKPDQLIRRFKNERLPNIVVTVDL 765 (1123)
T ss_pred --cCCCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCC------c--cchHHHHHHHhCCCCCeEEEEecc
Confidence 22468999999999999988887653 22223345567887 2 345789999999986 79999999
Q ss_pred ccccccCCCccEEEEccCCCCHHHHHHHhcccccc
Q 000384 484 IEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQH 518 (1590)
Q Consensus 484 leeGIDip~~~~VI~fD~p~s~~~yiQr~GRA~R~ 518 (1590)
+.+|+|+|.|++||.++++.|...|+|++||+.|.
T Consensus 766 L~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~ 800 (1123)
T PRK11448 766 LTTGIDVPSICNLVFLRRVRSRILYEQMLGRATRL 800 (1123)
T ss_pred cccCCCcccccEEEEecCCCCHHHHHHHHhhhccC
Confidence 99999999999999999999999999999999995
|
|
| >KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-26 Score=286.90 Aligned_cols=402 Identities=18% Similarity=0.192 Sum_probs=254.7
Q ss_pred CCCCCCCCCcHHHHHHHHHHh-----cCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHH
Q 000384 38 STNSINFIPRIYQLKVFEVAK-----RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDV 112 (1590)
Q Consensus 38 ~~~~~~~~pR~yQ~e~le~~~-----~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~ 112 (1590)
+......++|+||.+.+++++ ++|+|+++++|.|||+..+.++..+....+..+ ..|++||...+ ..|.++
T Consensus 363 p~~~~g~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~g---pflvvvplst~-~~W~~e 438 (1373)
T KOG0384|consen 363 PEYKGGNELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQIHG---PFLVVVPLSTI-TAWERE 438 (1373)
T ss_pred ccccccchhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhccC---CeEEEeehhhh-HHHHHH
Confidence 334445899999999998875 599999999999999999999888876333322 37999998665 559999
Q ss_pred HHhhcCCceEEEecCCCCCccchHHHHHhc------CCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCC--C
Q 000384 113 IRVHTDFEVEEYYGAKGVDEWDSQCWQKEI------NKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGN--H 184 (1590)
Q Consensus 113 i~~~~~~~v~~~~G~~~~d~~~~~~w~~~~------~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~--~ 184 (1590)
|..+++.++..|+|+..... -.+.+.... -+.+++++|+++++..- .++.--.|..+++||||+++.. +
T Consensus 439 f~~w~~mn~i~y~g~~~sr~-~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk--~~L~~i~w~~~~vDeahrLkN~~~~ 515 (1373)
T KOG0384|consen 439 FETWTDMNVIVYHGNLESRQ-LIRQYEFYHSSNTKKLKFNALLTTYEIVLKDK--AELSKIPWRYLLVDEAHRLKNDESK 515 (1373)
T ss_pred HHHHhhhceeeeecchhHHH-HHHHHHheecCCccccccceeehhhHHHhccH--hhhccCCcceeeecHHhhcCchHHH
Confidence 99999999999999764321 111111111 15799999999997643 3455567889999999999843 2
Q ss_pred cHHHHHHHHHhcCCCCCcEEEEeccCCccCCCCChhcHHHHHHHHHhhcCCeeEeecc---hhhhhhcccCcceeeEecc
Q 000384 185 PYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIED---KTEMEVFVPSAKESCRFYD 261 (1590)
Q Consensus 185 ~~~~im~~~~~~~~~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~~~~~---~~~l~~~~~~p~~~~~~y~ 261 (1590)
-|.. +..| ...+.|++|+||.+|+ +.+|.++++=. -|.. .+++..-..
T Consensus 516 l~~~-l~~f-----~~~~rllitgTPlQNs-----------ikEL~sLl~Fl--~P~kf~~~~~f~~~~~---------- 566 (1373)
T KOG0384|consen 516 LYES-LNQF-----KMNHRLLITGTPLQNS-----------LKELWSLLHFL--MPGKFDSWDEFLEEFD---------- 566 (1373)
T ss_pred HHHH-HHHh-----cccceeeecCCCcccc-----------HHHHHHHhccc--CCCCCCcHHHHHHhhc----------
Confidence 2333 4444 4567899999999987 67777666411 1110 011100000
Q ss_pred CCCCcccchhhhHHHhhhhhhhhHH-HHHhhhhhhhccch-----hhHHHHHHHHH-----HHHH-----------HHHH
Q 000384 262 QSKFCGSDLKGKLEVSWSKFDASLS-KLQGSQLNCYKDMD-----DKHKTLRKQLS-----DYHA-----------KILY 319 (1590)
Q Consensus 262 ~~~~~~~~l~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~-----~~~~~~~~~l~-----~~~~-----------~~~~ 319 (1590)
..-...+..+...+.+.+. ++.......+..-. -.+..+++++. +++. .+++
T Consensus 567 ------~~~e~~~~~L~~~L~P~~lRr~kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLN 640 (1373)
T KOG0384|consen 567 ------EETEEQVRKLQQILKPFLLRRLKKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLN 640 (1373)
T ss_pred ------chhHHHHHHHHHHhhHHHHHHHHhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHH
Confidence 0000011111112222221 11111111111000 00111222211 1111 1233
Q ss_pred HHHHhhhhHHHHHHHHHHHHhHhHHHHHHHHhhhhHHHHH-HHHHHHHHHhhhcCcchhhhccccCCccccccCCCCCHH
Q 000384 320 CLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKY-FLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTK 398 (1590)
Q Consensus 320 ~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K 398 (1590)
+..+|.-.|...+...-.++ .+...... ..+..+..+ -..|.|
T Consensus 641 immELkKccNHpyLi~gaee------------~~~~~~~~~~~d~~L~~l------------------------I~sSGK 684 (1373)
T KOG0384|consen 641 IMMELKKCCNHPYLIKGAEE------------KILGDFRDKMRDEALQAL------------------------IQSSGK 684 (1373)
T ss_pred HHHHHHHhcCCccccCcHHH------------HHHHhhhhcchHHHHHHH------------------------HHhcCc
Confidence 33333333322211100000 00000000 000111110 012667
Q ss_pred HHHHHHHHHhcCCCCCcEEEEEEehHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcC---CCc
Q 000384 399 LHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRG---GKV 475 (1590)
Q Consensus 399 ~~~L~~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~---g~~ 475 (1590)
+-.|-++|.... ..++|++||.+.+.+.+.|+++|.. .++....+.|. +..+.|+.+|+.|.. ..+
T Consensus 685 lVLLDKLL~rLk-~~GHrVLIFSQMVRmLDIL~eYL~~----r~ypfQRLDGs------vrgelRq~AIDhFnap~SddF 753 (1373)
T KOG0384|consen 685 LVLLDKLLPRLK-EGGHRVLIFSQMVRMLDILAEYLSL----RGYPFQRLDGS------VRGELRQQAIDHFNAPDSDDF 753 (1373)
T ss_pred EEeHHHHHHHHh-cCCceEEEhHHHHHHHHHHHHHHHH----cCCcceeccCC------cchHHHHHHHHhccCCCCCce
Confidence 777777777766 5679999999999999999999987 78999999998 789999999999985 358
Q ss_pred eEEEEcccccccccCCCccEEEEccCCCCHHHHHHHhccccccCceEEEEecc
Q 000384 476 NLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLER 528 (1590)
Q Consensus 476 ~vLVaT~vleeGIDip~~~~VI~fD~p~s~~~yiQr~GRA~R~gs~~ivlv~~ 528 (1590)
.+|+||.+++-|||+-.++.||.||..||+..-+|...||+|.|++-.|+|++
T Consensus 754 vFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYR 806 (1373)
T KOG0384|consen 754 VFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYR 806 (1373)
T ss_pred EEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEE
Confidence 89999999999999999999999999999999999999999999998888876
|
|
| >TIGR01587 cas3_core CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.9e-26 Score=274.67 Aligned_cols=296 Identities=17% Similarity=0.163 Sum_probs=189.8
Q ss_pred CEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhhcCCceEEEecCCCCCc----cch-
Q 000384 61 NTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDE----WDS- 135 (1590)
Q Consensus 61 n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~~~~v~~~~G~~~~d~----~~~- 135 (1590)
.++|.+|||||||.++++++.+.+. .+...+++|++|+++|+.|+++.++..++..++.++|...... .+.
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~----~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~ 76 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIK----SQKADRVIIALPTRATINAMYRRAKELFGSNLGLLHSSSSFKRIKEMGDSE 76 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHh----hCCCCeEEEEeehHHHHHHHHHHHHHHhCcccEEeeccHHHHHHhccCCch
Confidence 4799999999999999998887654 2345679999999999999999999988877777777543110 000
Q ss_pred ---HHHHHh------cCCCcEEEEcHHHHHHHHHhcC----cCcc--ceeEEEEeccccccCCC--cHHHHHHHHHhcCC
Q 000384 136 ---QCWQKE------INKNDVLVMTPQILLDALRKAF----LSLD--IVCFIVIDECHHATGNH--PYTKIMKEFYHKSD 198 (1590)
Q Consensus 136 ---~~w~~~------~~~~~VlV~T~q~L~~~l~~~~----~~l~--~i~lII~DEaH~~~~~~--~~~~im~~~~~~~~ 198 (1590)
..|... ....+|+|+||+.++..+.+++ +.+. ..++|||||||.+.... .+..+++.+ ..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~~l---~~ 153 (358)
T TIGR01587 77 EFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLALILAVLEVL---KD 153 (358)
T ss_pred hHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHHHH---HH
Confidence 111111 1246899999999988776521 1112 23789999999987531 122222211 13
Q ss_pred CCCcEEEEeccCCccCCCCChhcHHHHHHHHHhhcCCeeEeecchhhhhhcccCcceeeEeccCCCCcccchhhhHHHhh
Q 000384 199 NKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSW 278 (1590)
Q Consensus 199 ~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~~~~~~~~l~~~~~~p~~~~~~y~~~~~~~~~l~~~~~~~~ 278 (1590)
...++++||||+.. .+..+....... . . + ..+...... ...
T Consensus 154 ~~~~~i~~SATlp~------------~l~~~~~~~~~~---~-~----------~----~~~~~~~~~------~~~--- 194 (358)
T TIGR01587 154 NDVPILLMSATLPK------------FLKEYAEKIGYV---E-F----------N----EPLDLKEER------RFE--- 194 (358)
T ss_pred cCCCEEEEecCchH------------HHHHHHhcCCCc---c-c----------c----cCCCCcccc------ccc---
Confidence 46789999999631 111111110000 0 0 0 000000000 000
Q ss_pred hhhhhhHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHhHHHHHHHHhhhhHHHH
Q 000384 279 SKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCK 358 (1590)
Q Consensus 279 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (1590)
...+.
T Consensus 195 --------------~~~~~------------------------------------------------------------- 199 (358)
T TIGR01587 195 --------------RHRFI------------------------------------------------------------- 199 (358)
T ss_pred --------------cccce-------------------------------------------------------------
Confidence 00000
Q ss_pred HHHHHHHHHHhhhcCcchhhhccccCCccccccCCCCCHHHHHHHHHHHhcCCCCCcEEEEEEehHHHHHHHHHHHhhCC
Q 000384 359 YFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVP 438 (1590)
Q Consensus 359 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~ 438 (1590)
. .......|...+.+++.... .+.++||||+++..+..+++.|....
T Consensus 200 -----------~--------------------~~~~~~~~~~~l~~l~~~~~--~~~~~lVf~~t~~~~~~~~~~L~~~~ 246 (358)
T TIGR01587 200 -----------K--------------------IESDKVGEISSLERLLEFIK--KGGKIAIIVNTVDRAQEFYQQLKENA 246 (358)
T ss_pred -----------e--------------------eccccccCHHHHHHHHHHhh--CCCeEEEEECCHHHHHHHHHHHHhhc
Confidence 0 00000112233333333221 34689999999999999999998731
Q ss_pred CCCCeeEEEEEcCCCCCCCCCHHHHHH----HHHHhcCCCceEEEEcccccccccCCCccEEEEccCCCCHHHHHHHhcc
Q 000384 439 FLTHLTVAYLTGSTTSVDALTPKVQKE----VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514 (1590)
Q Consensus 439 ~~~~~~~~~l~G~~~~~~~~~~~~r~~----vl~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fD~p~s~~~yiQr~GR 514 (1590)
....+..+||. ++..+|.+ ++++|++|+.++||||+++++|||++ +++||+++.| +.+|+||+||
T Consensus 247 --~~~~~~~~h~~------~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~~~~iqr~GR 315 (358)
T TIGR01587 247 --PEEEIMLLHSR------FTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--IDSLIQRLGR 315 (358)
T ss_pred --CCCeEEEEECC------CCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--HHHHHHHhcc
Confidence 23468899998 88888865 58999999999999999999999996 8999998876 7899999999
Q ss_pred ccccCce
Q 000384 515 ARQHNSQ 521 (1590)
Q Consensus 515 A~R~gs~ 521 (1590)
+||.|.+
T Consensus 316 ~gR~g~~ 322 (358)
T TIGR01587 316 LHRYGRK 322 (358)
T ss_pred ccCCCCC
Confidence 9998753
|
This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model. |
| >KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.4e-26 Score=265.09 Aligned_cols=325 Identities=22% Similarity=0.272 Sum_probs=226.2
Q ss_pred CCCCCcHHHHHHHHHHh-cCCEEEEeCCCChHHHHHHHHHHHHHHHHHh--CCCCeEEEEEecChhhHHHHHHHHHhhc-
Q 000384 42 INFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKS--NGFKKLIIFLAPTVHLVHQQYDVIRVHT- 117 (1590)
Q Consensus 42 ~~~~pR~yQ~e~le~~~-~~n~Ii~~~TGsGKTliailli~~~l~~~~~--~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~- 117 (1590)
..-.|.+.|.+++.-.+ +++++.++|||+|||+.+.++|...+..... ...+-+++|+.|+++|+.|.+.+++.+.
T Consensus 155 ~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~ 234 (593)
T KOG0344|consen 155 GFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYSI 234 (593)
T ss_pred CCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcCC
Confidence 45568999999999887 5999999999999999999998877764431 2344579999999999999999999875
Q ss_pred ----CCceEEEecCCCCCccchHHHHHhcCCCcEEEEcHHHHHHHHHhcC--cCccceeEEEEeccccccCCCcHHHHHH
Q 000384 118 ----DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAF--LSLDIVCFIVIDECHHATGNHPYTKIMK 191 (1590)
Q Consensus 118 ----~~~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~~~--~~l~~i~lII~DEaH~~~~~~~~~~im~ 191 (1590)
++++..+......+. ..-......++|+|.||-.+...+..+. +.+..+.++|+||++.+.....+.....
T Consensus 235 ~~~t~~~a~~~~~~~~~~q---k~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla 311 (593)
T KOG0344|consen 235 DEGTSLRAAQFSKPAYPSQ---KPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEPEFFVEQLA 311 (593)
T ss_pred CCCCchhhhhcccccchhh---ccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhhChhhHHHHHH
Confidence 334443433322111 0111112367999999999999998775 6789999999999999987634444444
Q ss_pred HHHhcC-CCCCcEEEEeccCCccCCCCChhcHHHHHHHHHhhcCCeeEeecchhhhhhcccCcceeeEeccCCCCcccch
Q 000384 192 EFYHKS-DNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDL 270 (1590)
Q Consensus 192 ~~~~~~-~~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~~~~~~~~l~~~~~~p~~~~~~y~~~~~~~~~l 270 (1590)
..|... .+..++=.+|||-... +++.....-..+-..++...+..
T Consensus 312 ~I~sac~s~~i~~a~FSat~~~~--------VEE~~~~i~~~~~~vivg~~~sa-------------------------- 357 (593)
T KOG0344|consen 312 DIYSACQSPDIRVALFSATISVY--------VEEWAELIKSDLKRVIVGLRNSA-------------------------- 357 (593)
T ss_pred HHHHHhcCcchhhhhhhccccHH--------HHHHHHHhhccceeEEEecchhH--------------------------
Confidence 455433 3444555566763211 11111111000000000000000
Q ss_pred hhhHHHhhhhhhhhHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHhHHHHHHHH
Q 000384 271 KGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIY 350 (1590)
Q Consensus 271 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~ 350 (1590)
T Consensus 358 -------------------------------------------------------------------------------- 357 (593)
T KOG0344|consen 358 -------------------------------------------------------------------------------- 357 (593)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhHHHHHHHHHHHHHHhhhcCcchhhhccccCCccccccCCCCCHHHHHHHHHHHhcCCCCCcEEEEEEehHHHHHHH
Q 000384 351 RQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVV 430 (1590)
Q Consensus 351 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~ta~~L 430 (1590)
...+.+.+ +--+....|+..+.+++..-- ...++||+++...|..|
T Consensus 358 --------------~~~V~Qel-----------------vF~gse~~K~lA~rq~v~~g~---~PP~lIfVQs~eRak~L 403 (593)
T KOG0344|consen 358 --------------NETVDQEL-----------------VFCGSEKGKLLALRQLVASGF---KPPVLIFVQSKERAKQL 403 (593)
T ss_pred --------------hhhhhhhh-----------------eeeecchhHHHHHHHHHhccC---CCCeEEEEecHHHHHHH
Confidence 00000000 000111456667777775432 34689999999999999
Q ss_pred HHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCceEEEEcccccccccCCCccEEEEccCCCCHHHHHH
Q 000384 431 ERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQ 510 (1590)
Q Consensus 431 ~~~L~~~~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fD~p~s~~~yiQ 510 (1590)
.+.|.. +.++.+..+||. .++.+|.+++++||.|++.+||||+++++|||+.++|+||+||.|.+..+|+|
T Consensus 404 ~~~L~~---~~~i~v~vIh~e------~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VInyD~p~s~~syih 474 (593)
T KOG0344|consen 404 FEELEI---YDNINVDVIHGE------RSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIH 474 (593)
T ss_pred HHHhhh---ccCcceeeEecc------cchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEEecCCCchhHHHHH
Confidence 999963 478999999998 78999999999999999999999999999999999999999999999999999
Q ss_pred HhccccccCce--EEEEe
Q 000384 511 SRGRARQHNSQ--FILML 526 (1590)
Q Consensus 511 r~GRA~R~gs~--~ivlv 526 (1590)
|+||.||+|.. .+.+.
T Consensus 475 rIGRtgRag~~g~Aitfy 492 (593)
T KOG0344|consen 475 RIGRTGRAGRSGKAITFY 492 (593)
T ss_pred HhhccCCCCCCcceEEEe
Confidence 99999998864 44443
|
|
| >TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.6e-25 Score=264.44 Aligned_cols=315 Identities=17% Similarity=0.239 Sum_probs=189.0
Q ss_pred HHHHHHHHHhcC---CEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhhc-------C
Q 000384 49 YQLKVFEVAKRR---NTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT-------D 118 (1590)
Q Consensus 49 yQ~e~le~~~~~---n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~-------~ 118 (1590)
||.++++.+.+. ++++++|||+|||.++++++.. ...+++|++|+++|++||++.++.++ +
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~---------~~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~ 71 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLH---------GENDTIALYPTNALIEDQTEAIKEFVDVFKPERD 71 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHH---------cCCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCC
Confidence 699999999853 4789999999999999887653 12247999999999999999999875 5
Q ss_pred CceEEEecCCCCC--ccc--------h----HHHHH--hcCCCcEEEEcHHHHHHHHHhcCc--------CccceeEEEE
Q 000384 119 FEVEEYYGAKGVD--EWD--------S----QCWQK--EINKNDVLVMTPQILLDALRKAFL--------SLDIVCFIVI 174 (1590)
Q Consensus 119 ~~v~~~~G~~~~d--~~~--------~----~~w~~--~~~~~~VlV~T~q~L~~~l~~~~~--------~l~~i~lII~ 174 (1590)
..+..+.|+...+ .|. . ..++. ....+.|+++||++|..++.+.+. .+..+++|||
T Consensus 72 ~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~ 151 (357)
T TIGR03158 72 VNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIF 151 (357)
T ss_pred ceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEE
Confidence 6677777763322 111 0 01111 124688999999999877655322 1478999999
Q ss_pred eccccccCCCc-----HHHHHHHHHhcCCCCCcEEEEeccCCccCCCCChhcHHHHHHHHHhh--cCCeeEeecchhhhh
Q 000384 175 DECHHATGNHP-----YTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELEST--LDSQVFTIEDKTEME 247 (1590)
Q Consensus 175 DEaH~~~~~~~-----~~~im~~~~~~~~~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~--l~~~i~~~~~~~~l~ 247 (1590)
||+|.+..... +...+..+ ......+++++|||||.. .....|+.. ++..+..+....
T Consensus 152 DE~H~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~i~lSAT~~~-----------~~~~~l~~~~~~~~~~~~v~g~~--- 216 (357)
T TIGR03158 152 DEFHLYDAKQLVGMLFLLAYMQLI-RFFECRRKFVFLSATPDP-----------ALILRLQNAKQAGVKIAPIDGEK--- 216 (357)
T ss_pred ecccccCcccchhhhhhhHHHHHH-HhhhcCCcEEEEecCCCH-----------HHHHHHHhccccCceeeeecCcc---
Confidence 99999875321 11222211 111234899999999852 223334433 222211111100
Q ss_pred hcccCcceeeEeccCCCCcccchhhhHHHhhhhhhhhHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 000384 248 VFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLI 327 (1590)
Q Consensus 248 ~~~~~p~~~~~~y~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~ 327 (1590)
+.+...+- +...... ..|.
T Consensus 217 ----------~~~~~~~~----~~~~~~~-----------------~~~~------------------------------ 235 (357)
T TIGR03158 217 ----------YQFPDNPE----LEADNKT-----------------QSFR------------------------------ 235 (357)
T ss_pred ----------cccCCChh----hhccccc-----------------cccc------------------------------
Confidence 00000000 0000000 0000
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcCcchhhhccccCCccccccCCCCCHHHHHHHHHH-
Q 000384 328 CAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLF- 406 (1590)
Q Consensus 328 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL- 406 (1590)
.++..+... .. . ........+..+.+.+
T Consensus 236 -----------------------------------~~~~~i~~~-------~~-------~--~~~~~~~~l~~l~~~i~ 264 (357)
T TIGR03158 236 -----------------------------------PVLPPVELE-------LI-------P--APDFKEEELSELAEEVI 264 (357)
T ss_pred -----------------------------------eeccceEEE-------EE-------e--CCchhHHHHHHHHHHHH
Confidence 000000000 00 0 0000001112222222
Q ss_pred HhcCCCCCcEEEEEEehHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCceEEEEcccccc
Q 000384 407 LSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEE 486 (1590)
Q Consensus 407 ~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~~vLVaT~vlee 486 (1590)
+.+....+.++||||+++..++.+++.|+... .++.+..+||. +++.+|.++ ++..+||||+++++
T Consensus 265 ~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~--~~~~~~~l~g~------~~~~~R~~~------~~~~iLVaTdv~~r 330 (357)
T TIGR03158 265 ERFRQLPGERGAIILDSLDEVNRLSDLLQQQG--LGDDIGRITGF------APKKDRERA------MQFDILLGTSTVDV 330 (357)
T ss_pred HHHhccCCCeEEEEECCHHHHHHHHHHHhhhC--CCceEEeeecC------CCHHHHHHh------ccCCEEEEecHHhc
Confidence 11212345689999999999999999998731 23567788998 788777544 47899999999999
Q ss_pred cccCCCccEEEEccCCCCHHHHHHHhcccc
Q 000384 487 GMHVPNCSYVIRFDLPKTVSSYIQSRGRAR 516 (1590)
Q Consensus 487 GIDip~~~~VI~fD~p~s~~~yiQr~GRA~ 516 (1590)
|||+|.. .|| ++ |.+..+|+||+||+|
T Consensus 331 GiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 331 GVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred ccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 9999976 666 56 899999999999997
|
subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system. |
| >COG1202 Superfamily II helicase, archaea-specific [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.2e-26 Score=260.00 Aligned_cols=318 Identities=19% Similarity=0.206 Sum_probs=224.6
Q ss_pred CCCCCcHHHHHHHHHHh--cCCEEEEeCCCChHHHHHHHH-HHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhh--
Q 000384 42 INFIPRIYQLKVFEVAK--RRNTIAVLETGAGKTMIAVML-IKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVH-- 116 (1590)
Q Consensus 42 ~~~~pR~yQ~e~le~~~--~~n~Ii~~~TGsGKTliaill-i~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~-- 116 (1590)
..-++.|.|.-+++.-+ +.|.+|+.+|+||||+++-+. |..++. .+++.+||||.++|++|-++.|+..
T Consensus 213 G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~------~g~KmlfLvPLVALANQKy~dF~~rYs 286 (830)
T COG1202 213 GIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS------GGKKMLFLVPLVALANQKYEDFKERYS 286 (830)
T ss_pred CcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHh------CCCeEEEEehhHHhhcchHHHHHHHhh
Confidence 46778999999999865 699999999999999999874 444433 4567999999999999999999874
Q ss_pred -cCCceEEEecCCCCCccchHHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCCCc---HHHHHHH
Q 000384 117 -TDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHP---YTKIMKE 192 (1590)
Q Consensus 117 -~~~~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~~~---~~~im~~ 192 (1590)
+++++.+-.|.........-.-.....+++|+|+||+-+.-+|+.| -.+.++..||+||+|.+..... .-.++.+
T Consensus 287 ~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiGtVVIDEiHtL~deERG~RLdGLI~R 365 (830)
T COG1202 287 KLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIGTVVIDEIHTLEDEERGPRLDGLIGR 365 (830)
T ss_pred cccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-CcccccceEEeeeeeeccchhcccchhhHHHH
Confidence 5788888888654443211111122347899999999998888887 6789999999999999875422 2222222
Q ss_pred HHhcCCCCCcEEEEeccCCccCCCCChhcHHHHHHHHHhhcCCeeEeecchhhhhhcccCcceeeEeccCCCCcccchhh
Q 000384 193 FYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKG 272 (1590)
Q Consensus 193 ~~~~~~~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~~~~~~~~l~~~~~~p~~~~~~y~~~~~~~~~l~~ 272 (1590)
. ...-+..++++||||..+. ..|-..|+++......+ |.|-+..+.+.....
T Consensus 366 L-r~l~~~AQ~i~LSATVgNp-------------~elA~~l~a~lV~y~~R-------PVplErHlvf~~~e~------- 417 (830)
T COG1202 366 L-RYLFPGAQFIYLSATVGNP-------------EELAKKLGAKLVLYDER-------PVPLERHLVFARNES------- 417 (830)
T ss_pred H-HHhCCCCeEEEEEeecCCh-------------HHHHHHhCCeeEeecCC-------CCChhHeeeeecCch-------
Confidence 1 1223468999999997654 34555666554433322 222222222111000
Q ss_pred hHHHhhhhhhhhHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHhHHHHHHHHhh
Q 000384 273 KLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQ 352 (1590)
Q Consensus 273 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~ 352 (1590)
T Consensus 418 -------------------------------------------------------------------------------- 417 (830)
T COG1202 418 -------------------------------------------------------------------------------- 417 (830)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHHHHHHHhhhcCcchhhhccccCCccccccCCCCCHHHHHHHHHHH-----hcCCCCCcEEEEEEehHHHH
Q 000384 353 SSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFL-----SFGKSTQVLCIIFVERIIAA 427 (1590)
Q Consensus 353 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~-----~~~~~~~~k~IIFv~~r~ta 427 (1590)
.|...+.++.+ .....-..++|||+++|..+
T Consensus 418 --------------------------------------------eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~ 453 (830)
T COG1202 418 --------------------------------------------EKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRC 453 (830)
T ss_pred --------------------------------------------HHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhH
Confidence 00000000000 00001124799999999999
Q ss_pred HHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCceEEEEcccccccccCCCccEEE---Ecc-CCC
Q 000384 428 KVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVI---RFD-LPK 503 (1590)
Q Consensus 428 ~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~~vLVaT~vleeGIDip~~~~VI---~fD-~p~ 503 (1590)
..|+..|.. .++++..+|++ |+..+|..+...|.++++.++|+|.+++-|+|+|+-.+|+ -++ -.-
T Consensus 454 h~lA~~L~~----kG~~a~pYHaG------L~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEsLaMG~~WL 523 (830)
T COG1202 454 HELADALTG----KGLKAAPYHAG------LPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFESLAMGIEWL 523 (830)
T ss_pred HHHHHHhhc----CCcccccccCC------CcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHHHHcccccC
Confidence 999999987 68999999988 9999999999999999999999999999999999755432 122 345
Q ss_pred CHHHHHHHhccccccCc----eEEEEecc
Q 000384 504 TVSSYIQSRGRARQHNS----QFILMLER 528 (1590)
Q Consensus 504 s~~~yiQr~GRA~R~gs----~~ivlv~~ 528 (1590)
|+..|.|+.|||||.+- +.++|++.
T Consensus 524 s~~EF~QM~GRAGRp~yHdrGkVyllvep 552 (830)
T COG1202 524 SVREFQQMLGRAGRPDYHDRGKVYLLVEP 552 (830)
T ss_pred CHHHHHHHhcccCCCCcccCceEEEEecC
Confidence 99999999999999874 46677765
|
|
| >TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.4e-25 Score=284.65 Aligned_cols=308 Identities=17% Similarity=0.166 Sum_probs=204.6
Q ss_pred HHHHHHHHHHh-cCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhhcCCceEEEec
Q 000384 48 IYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYG 126 (1590)
Q Consensus 48 ~yQ~e~le~~~-~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~~~~v~~~~G 126 (1590)
.+-.++++.+. ++++|+.++||||||.++..+|.+... .+.++++++|++.++.|.++.+.+.++..++...|
T Consensus 5 ~~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~------~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VG 78 (819)
T TIGR01970 5 AVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG------IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVG 78 (819)
T ss_pred HHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc------cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEE
Confidence 34445666665 478999999999999999987765432 23469999999999999999998776654443333
Q ss_pred CC-CCCccchHHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEecccc-ccCCCcHHHHHHHHHhcCCCCCcEE
Q 000384 127 AK-GVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHH-ATGNHPYTKIMKEFYHKSDNKPKVF 204 (1590)
Q Consensus 127 ~~-~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~-~~~~~~~~~im~~~~~~~~~~priL 204 (1590)
-. ..+. ..-.+.+|+|+|+++|++.+.+. ..+.++++|||||+|. .....-...+++..........+++
T Consensus 79 y~vr~~~-------~~s~~t~I~v~T~G~Llr~l~~d-~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlI 150 (819)
T TIGR01970 79 YRVRGEN-------KVSRRTRLEVVTEGILTRMIQDD-PELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKIL 150 (819)
T ss_pred EEEcccc-------ccCCCCcEEEECCcHHHHHHhhC-cccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEE
Confidence 11 1110 11235799999999999998764 5789999999999995 4332121223333333345568999
Q ss_pred EEeccCCccCCCCChhcHHHHHHHHHhhcC-CeeEeecchhhhhhcccCcceeeEeccCCCCcccchhhhHHHhhhhhhh
Q 000384 205 GMTASPVVRKGVSSAMDCEGQISELESTLD-SQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDA 283 (1590)
Q Consensus 205 gLTATP~~~~~~~~~~~~~~~i~~Le~~l~-~~i~~~~~~~~l~~~~~~p~~~~~~y~~~~~~~~~l~~~~~~~~~~~~~ 283 (1590)
.||||.... .+...++ +.+.....+. .| ...+|.+.
T Consensus 151 lmSATl~~~--------------~l~~~l~~~~vI~~~gr~-------~p--Ve~~y~~~-------------------- 187 (819)
T TIGR01970 151 AMSATLDGE--------------RLSSLLPDAPVVESEGRS-------FP--VEIRYLPL-------------------- 187 (819)
T ss_pred EEeCCCCHH--------------HHHHHcCCCcEEEecCcc-------ee--eeeEEeec--------------------
Confidence 999997521 1233332 1111111100 00 00111000
Q ss_pred hHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHhHHHHHHHHhhhhHHHHHHHHH
Q 000384 284 SLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEE 363 (1590)
Q Consensus 284 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (1590)
... .++.
T Consensus 188 ----------------~~~--------------------------------------------------------~~~~- 194 (819)
T TIGR01970 188 ----------------RGD--------------------------------------------------------QRLE- 194 (819)
T ss_pred ----------------chh--------------------------------------------------------hhHH-
Confidence 000 0000
Q ss_pred HHHHHhhhcCcchhhhccccCCccccccCCCCCHHHHHHHHHHHhcCCCCCcEEEEEEehHHHHHHHHHHHhhCCCCCCe
Q 000384 364 VLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHL 443 (1590)
Q Consensus 364 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~~~~~ 443 (1590)
......+..++.. ...++|||++++..++.+++.|..... .++
T Consensus 195 --------------------------------~~v~~~l~~~l~~----~~g~iLVFlpg~~eI~~l~~~L~~~~~-~~~ 237 (819)
T TIGR01970 195 --------------------------------DAVSRAVEHALAS----ETGSILVFLPGQAEIRRVQEQLAERLD-SDV 237 (819)
T ss_pred --------------------------------HHHHHHHHHHHHh----cCCcEEEEECCHHHHHHHHHHHHhhcC-CCc
Confidence 0000111122221 134699999999999999999986311 368
Q ss_pred eEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCceEEEEcccccccccCCCccEEEEccCCC------------------CH
Q 000384 444 TVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPK------------------TV 505 (1590)
Q Consensus 444 ~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fD~p~------------------s~ 505 (1590)
.+..+||. |+.++|.++++.|++|+.+|||||+++|.|||||++++||+++.+. |-
T Consensus 238 ~v~pLHg~------L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSk 311 (819)
T TIGR01970 238 LICPLYGE------LSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQ 311 (819)
T ss_pred EEEEecCC------CCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECH
Confidence 88999998 9999999999999999999999999999999999999999999875 23
Q ss_pred HHHHHHhccccccCceEEEEecc
Q 000384 506 SSYIQSRGRARQHNSQFILMLER 528 (1590)
Q Consensus 506 ~~yiQr~GRA~R~gs~~ivlv~~ 528 (1590)
.+++||+|||||.+.+.++-+..
T Consensus 312 asa~QR~GRAGR~~~G~cyrL~t 334 (819)
T TIGR01970 312 ASATQRAGRAGRLEPGVCYRLWS 334 (819)
T ss_pred HHHHhhhhhcCCCCCCEEEEeCC
Confidence 56999999999987765554444
|
This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >KOG0334 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.5e-26 Score=282.12 Aligned_cols=320 Identities=22% Similarity=0.282 Sum_probs=227.5
Q ss_pred CCCcHHHHHHHHHHh-cCCEEEEeCCCChHHHHHHHHHHHHHHHH--HhCCCCeEEEEEecChhhHHHHHHHHHhh---c
Q 000384 44 FIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAI--KSNGFKKLIIFLAPTVHLVHQQYDVIRVH---T 117 (1590)
Q Consensus 44 ~~pR~yQ~e~le~~~-~~n~Ii~~~TGsGKTliailli~~~l~~~--~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~---~ 117 (1590)
-.|++.|..|++.++ ++++|.++.||||||+.+++++....... ...+.++.++|++||++|+.|..+.++++ +
T Consensus 386 ~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l 465 (997)
T KOG0334|consen 386 EKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRKFLKLL 465 (997)
T ss_pred CCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhc
Confidence 478999999999997 79999999999999999988765433211 13456789999999999999999988876 5
Q ss_pred CCceEEEecCCCCCccchHHHHHhcCCCcEEEEcHHHHHHHHHhcCc---CccceeEEEEeccccccCC--Cc-HHHHHH
Q 000384 118 DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL---SLDIVCFIVIDECHHATGN--HP-YTKIMK 191 (1590)
Q Consensus 118 ~~~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~~~~---~l~~i~lII~DEaH~~~~~--~~-~~~im~ 191 (1590)
++.+..++|+.+... ....+-.++.|+||||+.+.+.+-...- .+.++..+|+|||+++..- .| -..|++
T Consensus 466 ~ir~v~vygg~~~~~----qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~ 541 (997)
T KOG0334|consen 466 GIRVVCVYGGSGISQ----QIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRILQ 541 (997)
T ss_pred CceEEEecCCccHHH----HHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccchHHh
Confidence 899999999865432 2334445799999999999998754333 4556669999999998621 11 111332
Q ss_pred HHHhcCCCCCcEEEEeccCCccCCCCChhcHHHHHHHHHhhcCCeeEeecchhhhhhcccCcceeeEeccCCCCcccchh
Q 000384 192 EFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLK 271 (1590)
Q Consensus 192 ~~~~~~~~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~~~~~~~~l~~~~~~p~~~~~~y~~~~~~~~~l~ 271 (1590)
. ..+..+.+..|||-.+ .+..|.. .....|-+..+-+...-.
T Consensus 542 n----lrpdrQtvlfSatfpr------------~m~~la~----------------~vl~~Pveiiv~~~svV~------ 583 (997)
T KOG0334|consen 542 N----LRPDRQTVLFSATFPR------------SMEALAR----------------KVLKKPVEIIVGGRSVVC------ 583 (997)
T ss_pred h----cchhhhhhhhhhhhhH------------HHHHHHH----------------HhhcCCeeEEEccceeEe------
Confidence 2 1222333444444210 0111110 001122221111110000
Q ss_pred hhHHHhhhhhhhhHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHhHHHHHHHHh
Q 000384 272 GKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYR 351 (1590)
Q Consensus 272 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~ 351 (1590)
T Consensus 584 -------------------------------------------------------------------------------- 583 (997)
T KOG0334|consen 584 -------------------------------------------------------------------------------- 583 (997)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhHHHHHHHHHHHHHHhhhcCcchhhhccccCCccccccCCCCCHHHHHHHHHHHhcCCCCCcEEEEEEehHHHHHHHH
Q 000384 352 QSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVE 431 (1590)
Q Consensus 352 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~ta~~L~ 431 (1590)
..+.+ ....-...+.|+..|+++|..+.. +.++||||.....++.|.
T Consensus 584 --------------k~V~q-----------------~v~V~~~e~eKf~kL~eLl~e~~e--~~~tiiFv~~qe~~d~l~ 630 (997)
T KOG0334|consen 584 --------------KEVTQ-----------------VVRVCAIENEKFLKLLELLGERYE--DGKTIIFVDKQEKADALL 630 (997)
T ss_pred --------------ccceE-----------------EEEEecCchHHHHHHHHHHHHHhh--cCCEEEEEcCchHHHHHH
Confidence 00000 000011236799999999987753 568999999999999999
Q ss_pred HHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCceEEEEcccccccccCCCccEEEEccCCCCHHHHHHH
Q 000384 432 RFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQS 511 (1590)
Q Consensus 432 ~~L~~~~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fD~p~s~~~yiQr 511 (1590)
+-|.+ .++.+..+||. .++.+|..++++||+|.+++||||+++.+|||++...+||+||.|.....|++|
T Consensus 631 ~~L~~----ag~~~~slHGg------v~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR 700 (997)
T KOG0334|consen 631 RDLQK----AGYNCDSLHGG------VDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHR 700 (997)
T ss_pred HHHHh----cCcchhhhcCC------CchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEEcccchhHHHHHHH
Confidence 99987 57888889998 789999999999999999999999999999999999999999999999999999
Q ss_pred hccccccCce--EEEEecc
Q 000384 512 RGRARQHNSQ--FILMLER 528 (1590)
Q Consensus 512 ~GRA~R~gs~--~ivlv~~ 528 (1590)
.||+||.|.+ .++++..
T Consensus 701 ~gRTgragrkg~AvtFi~p 719 (997)
T KOG0334|consen 701 VGRTGRAGRKGAAVTFITP 719 (997)
T ss_pred hcccccCCccceeEEEeCh
Confidence 9999887754 5555554
|
|
| >KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.6e-25 Score=270.02 Aligned_cols=441 Identities=17% Similarity=0.183 Sum_probs=253.9
Q ss_pred CCCCCCCCcHHHHHHHHHHh-----cCCEEEEeCCCChHHHHHHHHHHHHHHHHHhC---CCCeEEEEEecChhhHHHHH
Q 000384 39 TNSINFIPRIYQLKVFEVAK-----RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSN---GFKKLIIFLAPTVHLVHQQY 110 (1590)
Q Consensus 39 ~~~~~~~pR~yQ~e~le~~~-----~~n~Ii~~~TGsGKTliailli~~~l~~~~~~---~~~~~vl~LvPt~~Lv~Qq~ 110 (1590)
+.+....+|.||+|.++++. +=+.|+++++|.|||++++-++..-....+.. -.....+|+||. .|+.-|.
T Consensus 969 p~pI~a~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~ 1047 (1549)
T KOG0392|consen 969 PVPISAKLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWK 1047 (1549)
T ss_pred ccchhHHHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHH
Confidence 34566789999999999874 36899999999999999888665433222111 122238999998 9999999
Q ss_pred HHHHhhcCC-ceEEEecCCCCCccchHHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCC-CcHHH
Q 000384 111 DVIRVHTDF-EVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGN-HPYTK 188 (1590)
Q Consensus 111 ~~i~~~~~~-~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~-~~~~~ 188 (1590)
.++.+++++ +|..|.|.-. .+..-+..+.+++|+|++|+++.+.+. ++.-.+|+++|+||.|-++.. .-..+
T Consensus 1048 ~E~~kf~pfL~v~~yvg~p~----~r~~lR~q~~~~~iiVtSYDv~RnD~d--~l~~~~wNYcVLDEGHVikN~ktkl~k 1121 (1549)
T KOG0392|consen 1048 SEVKKFFPFLKVLQYVGPPA----ERRELRDQYKNANIIVTSYDVVRNDVD--YLIKIDWNYCVLDEGHVIKNSKTKLTK 1121 (1549)
T ss_pred HHHHHhcchhhhhhhcCChH----HHHHHHhhccccceEEeeHHHHHHHHH--HHHhcccceEEecCcceecchHHHHHH
Confidence 999999874 8888888543 223345667789999999999987654 233467899999999998653 11222
Q ss_pred HHHHHHhcCCCCCcEEEEeccCCccCCCCChhcHHHHHHHHHhhcCCeeEeecchhhhhhcccCcceeeEeccCCCCccc
Q 000384 189 IMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGS 268 (1590)
Q Consensus 189 im~~~~~~~~~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~~~~~~~~l~~~~~~p~~~~~~y~~~~~~~~ 268 (1590)
.++.. ..-++|.||+||++|+. ..+..|-..|....... +++--.+|.. |-.. .+.......
T Consensus 1122 avkqL-----~a~hRLILSGTPIQNnv--------leLWSLFdFLMPGfLGt-EKqFqsrf~k-pI~a---sRd~K~Ssk 1183 (1549)
T KOG0392|consen 1122 AVKQL-----RANHRLILSGTPIQNNV--------LELWSLFDFLMPGFLGT-EKQFQSRFGK-PILA---SRDPKSSSK 1183 (1549)
T ss_pred HHHHH-----hhcceEEeeCCCcccCH--------HHHHHHHHHhcccccCc-HHHHHHHhcc-hhhh---hcCcccchh
Confidence 33322 34688999999999872 22333333333322222 2221112221 1000 000000001
Q ss_pred chh---hhHHHhhhhhhhhHHHHHhhhhhhhccchhhH--------HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 000384 269 DLK---GKLEVSWSKFDASLSKLQGSQLNCYKDMDDKH--------KTLRKQLSDYHAKILYCLDELGLICAYEAVKICL 337 (1590)
Q Consensus 269 ~l~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~~lg~~~a~~~~~~~~ 337 (1590)
+.. -.++....+.-+++.+.. ..+.+.+++.++ ..+++++.+++..-..+..+
T Consensus 1184 e~EaG~lAleaLHKqVLPF~LRRl--KedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~-------------- 1247 (1549)
T KOG0392|consen 1184 EQEAGVLALEALHKQVLPFLLRRL--KEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVS-------------- 1247 (1549)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHH--HHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccc--------------
Confidence 110 122333333333332111 112222222221 12233333332221100000
Q ss_pred HHhHhHHHHHHH-HhhhhHHHHHHHHHHHHHHhhhcCc--ch-hhhccccCCccccccCCCCCHHHHHHHHHHHhcCCC-
Q 000384 338 EKVLKAQEECEI-YRQSSLQCKYFLEEVLHVIGSALPL--AD-KIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKS- 412 (1590)
Q Consensus 338 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~--~~-~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~- 412 (1590)
.......+... ......+..+|+...-.-..-.+.. .+ ..+...-.........-..++|+.+|.++|.+++..
T Consensus 1248 -~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~ 1326 (1549)
T KOG0392|consen 1248 -SQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLTPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGN 1326 (1549)
T ss_pred -cccccchhccCcchHHHHHHHHHHHHhcCCcceeeCCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCC
Confidence 00000000000 0000001111111100000000000 00 000000000000000112389999999999877633
Q ss_pred ------------CCcEEEEEEehHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCC-CceE-E
Q 000384 413 ------------TQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGG-KVNL-L 478 (1590)
Q Consensus 413 ------------~~~k~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g-~~~v-L 478 (1590)
.++|++|||+-+.+.+.+.+-|.+- ..+.+....+.|+ .++.+|.+++++|.++ .+.+ |
T Consensus 1327 ~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~-~mpsVtymRLDGS------Vpp~~R~kiV~~FN~DptIDvLl 1399 (1549)
T KOG0392|consen 1327 NSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKK-YMPSVTYMRLDGS------VPPGDRQKIVERFNEDPTIDVLL 1399 (1549)
T ss_pred CCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhh-hcCceeEEEecCC------CCcHHHHHHHHHhcCCCceeEEE
Confidence 4689999999999999998876652 1233444566777 8999999999999999 5765 5
Q ss_pred EEcccccccccCCCccEEEEccCCCCHHHHHHHhccccccCceEEEEecc
Q 000384 479 FATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLER 528 (1590)
Q Consensus 479 VaT~vleeGIDip~~~~VI~fD~p~s~~~yiQr~GRA~R~gs~~ivlv~~ 528 (1590)
.+|.|++-|+|+.+++.||.++..||+..-.|.+.||+|.|++.+|=|++
T Consensus 1400 LTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVNVyR 1449 (1549)
T KOG0392|consen 1400 LTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYR 1449 (1549)
T ss_pred EeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeeeeee
Confidence 56799999999999999999999999999999999999999998888877
|
|
| >PRK11664 ATP-dependent RNA helicase HrpB; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.3e-25 Score=284.14 Aligned_cols=305 Identities=17% Similarity=0.188 Sum_probs=200.8
Q ss_pred HHHHHHHHHHh-cCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhhcCCce----E
Q 000384 48 IYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEV----E 122 (1590)
Q Consensus 48 ~yQ~e~le~~~-~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~~~~v----~ 122 (1590)
.+=.++++.+. ++++|+.++||||||.++.+++.+.. ....++++++||+.++.|.++.+...++..+ +
T Consensus 8 ~~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~------~~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VG 81 (812)
T PRK11664 8 AVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHG------GINGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVG 81 (812)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcC------CcCCeEEEECChHHHHHHHHHHHHHHhCcccCceEE
Confidence 34445666665 48899999999999999987665431 1224699999999999999999987765444 3
Q ss_pred EEecCCCCCccchHHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCCCc-HHHHHHHHHhcCCCCC
Q 000384 123 EYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHP-YTKIMKEFYHKSDNKP 201 (1590)
Q Consensus 123 ~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~~~-~~~im~~~~~~~~~~p 201 (1590)
...+.... .-.+.+|+|+|+++|++.+... ..++++++|||||+|...-+.. .-.+++..........
T Consensus 82 y~vr~~~~----------~~~~t~I~v~T~G~Llr~l~~d-~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~l 150 (812)
T PRK11664 82 YRMRAESK----------VGPNTRLEVVTEGILTRMIQRD-PELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDL 150 (812)
T ss_pred EEecCccc----------cCCCCcEEEEChhHHHHHHhhC-CCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccc
Confidence 33332211 1125689999999999988764 5789999999999997432212 1122222323334567
Q ss_pred cEEEEeccCCccCCCCChhcHHHHHHHHHhhcC-CeeEeecchhhhhhcccCcceeeEeccCCCCcccchhhhHHHhhhh
Q 000384 202 KVFGMTASPVVRKGVSSAMDCEGQISELESTLD-SQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSK 280 (1590)
Q Consensus 202 riLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~-~~i~~~~~~~~l~~~~~~p~~~~~~y~~~~~~~~~l~~~~~~~~~~ 280 (1590)
++++||||+.. ..+...+. +.+.....+. .| ...+|.+
T Consensus 151 qlilmSATl~~--------------~~l~~~~~~~~~I~~~gr~-------~p--V~~~y~~------------------ 189 (812)
T PRK11664 151 KLLIMSATLDN--------------DRLQQLLPDAPVIVSEGRS-------FP--VERRYQP------------------ 189 (812)
T ss_pred eEEEEecCCCH--------------HHHHHhcCCCCEEEecCcc-------cc--ceEEecc------------------
Confidence 99999999742 12223332 1111110000 00 0001100
Q ss_pred hhhhHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHhHHHHHHHHhhhhHHHHHH
Q 000384 281 FDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYF 360 (1590)
Q Consensus 281 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (1590)
.... .+
T Consensus 190 ------------------~~~~--------------------------------------------------------~~ 195 (812)
T PRK11664 190 ------------------LPAH--------------------------------------------------------QR 195 (812)
T ss_pred ------------------Cchh--------------------------------------------------------hh
Confidence 0000 00
Q ss_pred HHHHHHHHhhhcCcchhhhccccCCccccccCCCCCHHHHHHHHHHHhcCCCCCcEEEEEEehHHHHHHHHHHHhhCCCC
Q 000384 361 LEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFL 440 (1590)
Q Consensus 361 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~~ 440 (1590)
+... -...+.+++.. ....+|||++++..++.+++.|.... .
T Consensus 196 ~~~~---------------------------------v~~~l~~~l~~----~~g~iLVFlpg~~ei~~l~~~L~~~~-~ 237 (812)
T PRK11664 196 FDEA---------------------------------VARATAELLRQ----ESGSLLLFLPGVGEIQRVQEQLASRV-A 237 (812)
T ss_pred HHHH---------------------------------HHHHHHHHHHh----CCCCEEEEcCCHHHHHHHHHHHHHhc-c
Confidence 0000 00011112211 13479999999999999999998621 1
Q ss_pred CCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCceEEEEcccccccccCCCccEEEEccCCCC----------------
Q 000384 441 THLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKT---------------- 504 (1590)
Q Consensus 441 ~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fD~p~s---------------- 504 (1590)
.++.+..+||. |+.++|.++++.|++|+.+|||||+++|.|||||++++||+++.+..
T Consensus 238 ~~~~v~~Lhg~------l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~ 311 (812)
T PRK11664 238 SDVLLCPLYGA------LSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQR 311 (812)
T ss_pred CCceEEEeeCC------CCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEe
Confidence 35788899998 99999999999999999999999999999999999999999776643
Q ss_pred --HHHHHHHhccccccCceEEEEecc
Q 000384 505 --VSSYIQSRGRARQHNSQFILMLER 528 (1590)
Q Consensus 505 --~~~yiQr~GRA~R~gs~~ivlv~~ 528 (1590)
-.+|+||+|||||.+.+.++-+..
T Consensus 312 iSkasa~QR~GRaGR~~~G~cyrL~t 337 (812)
T PRK11664 312 ISQASMTQRAGRAGRLEPGICLHLYS 337 (812)
T ss_pred echhhhhhhccccCCCCCcEEEEecC
Confidence 358999999999987765555544
|
|
| >PHA02653 RNA helicase NPH-II; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-24 Score=273.40 Aligned_cols=314 Identities=18% Similarity=0.221 Sum_probs=195.0
Q ss_pred HHHHHHHHHHh-cCCEEEEeCCCChHHHHHHHHHHH---------HHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhhc
Q 000384 48 IYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKD---------IAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT 117 (1590)
Q Consensus 48 ~yQ~e~le~~~-~~n~Ii~~~TGsGKTliailli~~---------~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~ 117 (1590)
..|.++++.++ ++++|+.++||||||.+.-.++.+ .+.........+.+++++||++|+.|...++.+..
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~v 246 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKSL 246 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHHh
Confidence 36666777776 599999999999999874333322 11111112334579999999999999999998754
Q ss_pred C------CceEEEecCCCCCccchHHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCCCcHHHHHH
Q 000384 118 D------FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMK 191 (1590)
Q Consensus 118 ~------~~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~~~~~~im~ 191 (1590)
+ .++...+|+... ..+.......+|+|+|++... ..+.++++||+||||....... ++.
T Consensus 247 g~~~~~g~~v~v~~Gg~~~-----~~~~t~~k~~~Ilv~T~~L~l-------~~L~~v~~VVIDEaHEr~~~~D---llL 311 (675)
T PHA02653 247 GFDEIDGSPISLKYGSIPD-----ELINTNPKPYGLVFSTHKLTL-------NKLFDYGTVIIDEVHEHDQIGD---III 311 (675)
T ss_pred CccccCCceEEEEECCcch-----HHhhcccCCCCEEEEeCcccc-------cccccCCEEEccccccCccchh---HHH
Confidence 3 456778887652 112223346799999976421 2467899999999999865432 222
Q ss_pred HHHhcC-CCCCcEEEEeccCCccCCCCChhcHHHHHHHHHhhcC-CeeEeecchhhhhhcccCcceeeEeccCCCCcccc
Q 000384 192 EFYHKS-DNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLD-SQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSD 269 (1590)
Q Consensus 192 ~~~~~~-~~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~-~~i~~~~~~~~l~~~~~~p~~~~~~y~~~~~~~~~ 269 (1590)
.+.... ...++++.||||+... +..+...++ +....+..+ ...|. ...|-......
T Consensus 312 ~llk~~~~~~rq~ILmSATl~~d------------v~~l~~~~~~p~~I~I~gr------t~~pV--~~~yi~~~~~~-- 369 (675)
T PHA02653 312 AVARKHIDKIRSLFLMTATLEDD------------RDRIKEFFPNPAFVHIPGG------TLFPI--SEVYVKNKYNP-- 369 (675)
T ss_pred HHHHHhhhhcCEEEEEccCCcHh------------HHHHHHHhcCCcEEEeCCC------cCCCe--EEEEeecCccc--
Confidence 222222 2335899999997421 223333332 111111100 00000 01110000000
Q ss_pred hhhhHHHhhhhhhhhHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHhHHHHHHH
Q 000384 270 LKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEI 349 (1590)
Q Consensus 270 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~ 349 (1590)
...
T Consensus 370 ------------------------------~~~----------------------------------------------- 372 (675)
T PHA02653 370 ------------------------------KNK----------------------------------------------- 372 (675)
T ss_pred ------------------------------ccc-----------------------------------------------
Confidence 000
Q ss_pred HhhhhHHHHHHHHHHHHHHhhhcCcchhhhccccCCccccccCCCCCHHHHHHHHHHHhcCCCCCcEEEEEEehHHHHHH
Q 000384 350 YRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKV 429 (1590)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~ta~~ 429 (1590)
..+.. ..| ..+.+.+.......+.++|||++++..++.
T Consensus 373 --------~~y~~---------------------------------~~k-~~~l~~L~~~~~~~~g~iLVFlpg~~ei~~ 410 (675)
T PHA02653 373 --------RAYIE---------------------------------EEK-KNIVTALKKYTPPKGSSGIVFVASVSQCEE 410 (675)
T ss_pred --------hhhhH---------------------------------HHH-HHHHHHHHHhhcccCCcEEEEECcHHHHHH
Confidence 00000 000 001111111111223479999999999999
Q ss_pred HHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHh-cCCCceEEEEcccccccccCCCccEEEEcc---CCC--
Q 000384 430 VERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESF-RGGKVNLLFATDVIEEGMHVPNCSYVIRFD---LPK-- 503 (1590)
Q Consensus 430 L~~~L~~~~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~F-r~g~~~vLVaT~vleeGIDip~~~~VI~fD---~p~-- 503 (1590)
+.+.|.+.. +++.+..+||. |++. ++++++| ++|+.+|||||+++|+|||||++++||++| .|.
T Consensus 411 l~~~L~~~~--~~~~v~~LHG~------Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~ 480 (675)
T PHA02653 411 YKKYLEKRL--PIYDFYIIHGK------VPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPF 480 (675)
T ss_pred HHHHHHhhc--CCceEEeccCC------cCHH--HHHHHHHhccCceeEEeccChhhccccccCeeEEEECCCccCCCcc
Confidence 999998731 36889999998 7764 4677887 789999999999999999999999999998 555
Q ss_pred -------CHHHHHHHhccccccCceEEEEec
Q 000384 504 -------TVSSYIQSRGRARQHNSQFILMLE 527 (1590)
Q Consensus 504 -------s~~~yiQr~GRA~R~gs~~ivlv~ 527 (1590)
|..+|+||+|||||..++.++-+.
T Consensus 481 ~g~~~~iSkasa~QRaGRAGR~~~G~c~rLy 511 (675)
T PHA02653 481 GGKEMFISKSMRTQRKGRVGRVSPGTYVYFY 511 (675)
T ss_pred cCcccccCHHHHHHhccCcCCCCCCeEEEEE
Confidence 888999999999998766444443
|
|
| >KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.1e-25 Score=261.72 Aligned_cols=424 Identities=16% Similarity=0.161 Sum_probs=248.1
Q ss_pred CCCcHHHHHHHHHHh-----cCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhhc-
Q 000384 44 FIPRIYQLKVFEVAK-----RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT- 117 (1590)
Q Consensus 44 ~~pR~yQ~e~le~~~-----~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~- 117 (1590)
-.+.+||++.++++. +...|+.+++|.|||.+.+.++..+.... .-.+.+|||||. .++.||.+++.++.
T Consensus 204 ~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~---k~~~paLIVCP~-Tii~qW~~E~~~w~p 279 (923)
T KOG0387|consen 204 SKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSG---KLTKPALIVCPA-TIIHQWMKEFQTWWP 279 (923)
T ss_pred HHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcc---cccCceEEEccH-HHHHHHHHHHHHhCc
Confidence 457899999999885 36789999999999999999888876621 122569999997 88999999999986
Q ss_pred CCceEEEecCCCCCc----cchHHHHHh-----cCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCCCc-HH
Q 000384 118 DFEVEEYYGAKGVDE----WDSQCWQKE-----INKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHP-YT 187 (1590)
Q Consensus 118 ~~~v~~~~G~~~~d~----~~~~~w~~~-----~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~~~-~~ 187 (1590)
.++|.+++|...... -....|... .....|+++|+..|.- ....+.-..|+++|+||.|++...+. ..
T Consensus 280 ~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~--~~d~l~~~~W~y~ILDEGH~IrNpns~is 357 (923)
T KOG0387|consen 280 PFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRI--QGDDLLGILWDYVILDEGHRIRNPNSKIS 357 (923)
T ss_pred ceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcc--cCcccccccccEEEecCcccccCCccHHH
Confidence 589999988655211 112224432 3467899999998833 22234446789999999999986433 33
Q ss_pred HHHHHHHhcCCCCCcEEEEeccCCccCCCCChhcHHHHHHHHHhhcCCeeEee-cchhhhhhcccCcceeeEeccCCCCc
Q 000384 188 KIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTI-EDKTEMEVFVPSAKESCRFYDQSKFC 266 (1590)
Q Consensus 188 ~im~~~~~~~~~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~~~-~~~~~l~~~~~~p~~~~~~y~~~~~~ 266 (1590)
..++.+ ..+++++||+||++|+ +.+|.+++|-..-.. .....+.+.+.-|-.. --|....
T Consensus 358 lackki-----~T~~RiILSGTPiQNn-----------L~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~-GgyaNAs-- 418 (923)
T KOG0387|consen 358 LACKKI-----RTVHRIILSGTPIQNN-----------LTELWSLFDFVFPGKLGTLPVFQQNFEHPINR-GGYANAS-- 418 (923)
T ss_pred HHHHhc-----cccceEEeeCccccch-----------HHHHHHHhhhccCCcccchHHHHhhhhhheec-cccCCCC--
Confidence 334433 5688999999999987 677777766321100 0111111111111000 0010000
Q ss_pred ccchhhhHHHhhhhhhhhHHHHHhhhhhhhccchhhHHHH-HHHHHHHHHH-HHHHHHHhhhhHHHHHHHHHHHH-hHhH
Q 000384 267 GSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTL-RKQLSDYHAK-ILYCLDELGLICAYEAVKICLEK-VLKA 343 (1590)
Q Consensus 267 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~l~~~~~~-~~~~~~~lg~~~a~~~~~~~~~~-~~~~ 343 (1590)
.. .++..+. +. ..+...+..+ ..+++.+... .+.--++.=+||........+.. ....
T Consensus 419 --~~--qv~~ayk-ca--------------~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s 479 (923)
T KOG0387|consen 419 --PR--QVQTAYK-CA--------------VALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNS 479 (923)
T ss_pred --HH--HHHHHHH-HH--------------HHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhh
Confidence 00 0000000 00 0000001111 1111111111 00000111123321111110000 0000
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHhhhcCcchhhhcccc----CCccccccCCCCCHHHHHHHHHHHhcCCCCCcEEEE
Q 000384 344 QEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFG----FDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCII 419 (1590)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~----~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~k~II 419 (1590)
.+-..+.. ....+..-+ ..+.......+ +.... ............|.|++.+.++|..+. ..+.++++
T Consensus 480 ~~v~~i~n-g~~~~l~Gi----~iLrkICnHPd--ll~~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~-kqg~rvll 551 (923)
T KOG0387|consen 480 SEVNKILN-GKRNCLSGI----DILRKICNHPD--LLDRRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWK-KQGDRVLL 551 (923)
T ss_pred HHHHHHHc-CCccceech----HHHHhhcCCcc--cccCcccccccCCCcCCChhhcchHHHHHHHHHHHh-hCCCEEEE
Confidence 00000000 000000000 00111100000 00000 000000011224789999999998776 34569999
Q ss_pred EEehHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCC--ceEEEEcccccccccCCCccEEE
Q 000384 420 FVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGK--VNLLFATDVIEEGMHVPNCSYVI 497 (1590)
Q Consensus 420 Fv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~--~~vLVaT~vleeGIDip~~~~VI 497 (1590)
|.+++.+.+.|..+|... .++.+..+.|. .+...|...+++|.+++ .-+|++|.|++-|+|+..+|-||
T Consensus 552 Fsqs~~mLdilE~fL~~~---~~ysylRmDGt------T~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVI 622 (923)
T KOG0387|consen 552 FSQSRQMLDILESFLRRA---KGYSYLRMDGT------TPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVI 622 (923)
T ss_pred ehhHHHHHHHHHHHHHhc---CCceEEEecCC------CccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEE
Confidence 999999999999999863 68999999998 57889999999999887 45899999999999999999999
Q ss_pred EccCCCCHHHHHHHhccccccCceEEEEecc
Q 000384 498 RFDLPKTVSSYIQSRGRARQHNSQFILMLER 528 (1590)
Q Consensus 498 ~fD~p~s~~~yiQr~GRA~R~gs~~ivlv~~ 528 (1590)
.||+.||+..-.|++-||.|.|++--|.|++
T Consensus 623 IfDPdWNPStD~QAreRawRiGQkkdV~VYR 653 (923)
T KOG0387|consen 623 IFDPDWNPSTDNQARERAWRIGQKKDVVVYR 653 (923)
T ss_pred EECCCCCCccchHHHHHHHhhcCccceEEEE
Confidence 9999999999999999999999984444444
|
|
| >COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-24 Score=261.16 Aligned_cols=311 Identities=21% Similarity=0.304 Sum_probs=216.7
Q ss_pred CCCCCCCcHHHHHHHHHHhc-------CCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHH
Q 000384 40 NSINFIPRIYQLKVFEVAKR-------RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDV 112 (1590)
Q Consensus 40 ~~~~~~pR~yQ~e~le~~~~-------~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~ 112 (1590)
....|+++..|.+++..+.. .|-++.++.|||||++|++.+..... .+..+.+++||--|++|.++.
T Consensus 257 ~~LPF~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~------~G~Q~ALMAPTEILA~QH~~~ 330 (677)
T COG1200 257 AALPFKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIE------AGYQAALMAPTEILAEQHYES 330 (677)
T ss_pred HhCCCCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHH------cCCeeEEeccHHHHHHHHHHH
Confidence 45689999999999999863 57799999999999999999888776 455689999999999999999
Q ss_pred HHhhc---CCceEEEecCCCCCccchHHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCCCcHHHH
Q 000384 113 IRVHT---DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKI 189 (1590)
Q Consensus 113 i~~~~---~~~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~~~~~~i 189 (1590)
+.+++ +++|..++|...........-...-...+|+|+|...+.+ .+.+.++.|+|+||=|+..-. -+..
T Consensus 331 ~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd-----~V~F~~LgLVIiDEQHRFGV~--QR~~ 403 (677)
T COG1200 331 LRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQD-----KVEFHNLGLVIIDEQHRFGVH--QRLA 403 (677)
T ss_pred HHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhc-----ceeecceeEEEEeccccccHH--HHHH
Confidence 99985 7899999998865542222222223458999999987744 567899999999999998542 1111
Q ss_pred HHHHHhcCCC-CCcEEEEeccCCccCCCCChhcHHHHHHHHHhhcCCeeEeecchhhhhhcccCcceeeEeccCCCCccc
Q 000384 190 MKEFYHKSDN-KPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGS 268 (1590)
Q Consensus 190 m~~~~~~~~~-~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~~~~~~~~l~~~~~~p~~~~~~y~~~~~~~~ 268 (1590)
+..... .|++|.|||||+...-. .....+| + -..+.. .|.....+..+
T Consensus 404 ----L~~KG~~~Ph~LvMTATPIPRTLA------lt~fgDl----d--------vS~IdE-lP~GRkpI~T~-------- 452 (677)
T COG1200 404 ----LREKGEQNPHVLVMTATPIPRTLA------LTAFGDL----D--------VSIIDE-LPPGRKPITTV-------- 452 (677)
T ss_pred ----HHHhCCCCCcEEEEeCCCchHHHH------HHHhccc----c--------chhhcc-CCCCCCceEEE--------
Confidence 112233 69999999999965300 0000000 0 000000 00000000000
Q ss_pred chhhhHHHhhhhhhhhHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHhHHHHHH
Q 000384 269 DLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECE 348 (1590)
Q Consensus 269 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~ 348 (1590)
T Consensus 453 -------------------------------------------------------------------------------- 452 (677)
T COG1200 453 -------------------------------------------------------------------------------- 452 (677)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhhhHHHHHHHHHHHHHHhhhcCcchhhhccccCCccccccCCCCCHHHHHHHHHH-HhcCCCCCcEEEEEEehHH--
Q 000384 349 IYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLF-LSFGKSTQVLCIIFVERII-- 425 (1590)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL-~~~~~~~~~k~IIFv~~r~-- 425 (1590)
.+ ...+...+.+.+ .+. ..+.++.|.|+.+.
T Consensus 453 ----------------------------------------~i----~~~~~~~v~e~i~~ei--~~GrQaY~VcPLIeES 486 (677)
T COG1200 453 ----------------------------------------VI----PHERRPEVYERIREEI--AKGRQAYVVCPLIEES 486 (677)
T ss_pred ----------------------------------------Ee----ccccHHHHHHHHHHHH--HcCCEEEEEecccccc
Confidence 00 001111111111 111 23557777776543
Q ss_pred ------HHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCceEEEEcccccccccCCCccEEEEc
Q 000384 426 ------AAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRF 499 (1590)
Q Consensus 426 ------ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~f 499 (1590)
.|..++..|+.. +++++++.+||. |+..++.+++++|++|+++|||||.|.|.|||+|++++.|..
T Consensus 487 E~l~l~~a~~~~~~L~~~--~~~~~vgL~HGr------m~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVIe 558 (677)
T COG1200 487 EKLELQAAEELYEELKSF--LPELKVGLVHGR------MKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVIE 558 (677)
T ss_pred ccchhhhHHHHHHHHHHH--cccceeEEEecC------CChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEEe
Confidence 556666777743 568899999999 999999999999999999999999999999999999999998
Q ss_pred cCCC-CHHHHHHHhccccccCc-eEEEEecc
Q 000384 500 DLPK-TVSSYIQSRGRARQHNS-QFILMLER 528 (1590)
Q Consensus 500 D~p~-s~~~yiQr~GRA~R~gs-~~ivlv~~ 528 (1590)
|.-. -+.+.-|-|||+||-+. .|++++..
T Consensus 559 ~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~ 589 (677)
T COG1200 559 NAERFGLAQLHQLRGRVGRGDLQSYCVLLYK 589 (677)
T ss_pred chhhhhHHHHHHhccccCCCCcceEEEEEeC
Confidence 8644 78899999999999664 36666654
|
|
| >KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.3e-24 Score=253.27 Aligned_cols=451 Identities=19% Similarity=0.183 Sum_probs=258.4
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHh-----cCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHH
Q 000384 36 SSSTNSINFIPRIYQLKVFEVAK-----RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQY 110 (1590)
Q Consensus 36 ~~~~~~~~~~pR~yQ~e~le~~~-----~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~ 110 (1590)
+.......+++.+||.-.++++. +-|+|+++++|.|||.+++.++..+.+ ...+ +.=||+||...| +.|.
T Consensus 390 qp~~l~s~i~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvIaFlayLkq---~g~~-gpHLVVvPsSTl-eNWl 464 (941)
T KOG0389|consen 390 QPKLLSSGIQLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVIAFLAYLKQ---IGNP-GPHLVVVPSSTL-ENWL 464 (941)
T ss_pred CccccCCCCcccchhhhhHHHHHHHHHccccceehhhccCcchhHHHHHHHHHHH---cCCC-CCcEEEecchhH-HHHH
Confidence 34444567889999999999874 468899999999999999998777765 2222 335899999777 6799
Q ss_pred HHHHhhcC-CceEEEecCCCCCccchHHHHHhcCCCcEEEEcHHHHHHH-HHhcCcCccceeEEEEeccccccCC--CcH
Q 000384 111 DVIRVHTD-FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDA-LRKAFLSLDIVCFIVIDECHHATGN--HPY 186 (1590)
Q Consensus 111 ~~i~~~~~-~~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~-l~~~~~~l~~i~lII~DEaH~~~~~--~~~ 186 (1590)
++|++|++ ++|..|+|.......-+......-..++|+|+||+..-.- -.+.+++-.+|+++|+||+|.++.. ..|
T Consensus 465 rEf~kwCPsl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~SeRy 544 (941)
T KOG0389|consen 465 REFAKWCPSLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRTSERY 544 (941)
T ss_pred HHHHHhCCceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccchHHH
Confidence 99999995 8999999975321111111222223789999999987432 2345667788999999999999754 347
Q ss_pred HHHHHHHHhcCCCCCcEEEEeccCCccCCCCChhcHHHHHHHHHhhc---CCeeEeec--chhhhhhcccCcceeeEecc
Q 000384 187 TKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTL---DSQVFTIE--DKTEMEVFVPSAKESCRFYD 261 (1590)
Q Consensus 187 ~~im~~~~~~~~~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l---~~~i~~~~--~~~~l~~~~~~p~~~~~~y~ 261 (1590)
..+|+- +...+|+||+||.+|+ +.+|-++| -..++.-. +...+.+.-..+.
T Consensus 545 ~~LM~I------~An~RlLLTGTPLQNN-----------L~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d------- 600 (941)
T KOG0389|consen 545 KHLMSI------NANFRLLLTGTPLQNN-----------LKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSD------- 600 (941)
T ss_pred HHhccc------cccceEEeeCCccccc-----------HHHHHHHHHHHhhHhhhccchHHHHHHhccCCcc-------
Confidence 777762 4567899999999986 23333322 22222211 1112211111110
Q ss_pred CCCCcccch-hhhHHHhhhhhhhhHHH-HHhhhhhhhccchhhHH--------HHHHHHHHHHHHHH-------------
Q 000384 262 QSKFCGSDL-KGKLEVSWSKFDASLSK-LQGSQLNCYKDMDDKHK--------TLRKQLSDYHAKIL------------- 318 (1590)
Q Consensus 262 ~~~~~~~~l-~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~--------~~~~~l~~~~~~~~------------- 318 (1590)
.......+ ++.+...-.-+.+++.+ +... .+..++.++. ..++++........
T Consensus 601 -~d~e~~~l~qerIsrAK~im~PFILRR~K~q---VL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~ 676 (941)
T KOG0389|consen 601 -GDIENALLSQERISRAKTIMKPFILRRLKSQ---VLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSEL 676 (941)
T ss_pred -chhhHHHHHHHHHHHHHHhhhHHHHHHHHHH---HHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhcccccccccc
Confidence 00000000 11122211122222211 1111 1111111110 00111111100000
Q ss_pred ---HHHHHhhhhHHHHHHH------HHHHHhHhHHHHHHHHhhhhHH-H---HHHHH--HHHHHHhhhcCcchhhhcccc
Q 000384 319 ---YCLDELGLICAYEAVK------ICLEKVLKAQEECEIYRQSSLQ-C---KYFLE--EVLHVIGSALPLADKIFLDFG 383 (1590)
Q Consensus 319 ---~~~~~lg~~~a~~~~~------~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~--~~~~~i~~~~~~~~~~~~~~~ 383 (1590)
.++..|.-.+...... ..+....+.--....|.....+ . -.++. ++...+.++- ...+
T Consensus 677 ~~~~vlmqlRK~AnHPLL~R~~Y~de~L~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~-~~~~------ 749 (941)
T KOG0389|consen 677 KSGNVLMQLRKAANHPLLFRSIYTDEKLRKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFR-HLSK------ 749 (941)
T ss_pred ccchHHHHHHHHhcChhHHHHhccHHHHHHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcC-CCcc------
Confidence 0011111000000000 0000000000000001000000 0 00000 0111111110 0000
Q ss_pred CCccccccCCCCCHHHHHHHHHHHhcCCCCCcEEEEEEehHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHH
Q 000384 384 FDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQ 463 (1590)
Q Consensus 384 ~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~~~~~~r 463 (1590)
+ .-....-..|.|+..|..+|.... ..+.|++||.+...+.+.|..+|.. .++....+.|. ..-..|
T Consensus 750 f--~L~d~~~mdSgK~r~L~~LLp~~k-~~G~RVLiFSQFTqmLDILE~~L~~----l~~~ylRLDGs------TqV~~R 816 (941)
T KOG0389|consen 750 F--QLKDDLWMDSGKCRKLKELLPKIK-KKGDRVLIFSQFTQMLDILEVVLDT----LGYKYLRLDGS------TQVNDR 816 (941)
T ss_pred c--ccCCchhhhhhhHhHHHHHHHHHh-hcCCEEEEeeHHHHHHHHHHHHHHh----cCceEEeecCC------ccchHH
Confidence 0 000011124899999999998876 4568999999999999999999988 47888889998 578999
Q ss_pred HHHHHHhcCCC--ceEEEEcccccccccCCCccEEEEccCCCCHHHHHHHhccccccCceEEEEecc------chHHhhh
Q 000384 464 KEVLESFRGGK--VNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLER------SERSVTD 535 (1590)
Q Consensus 464 ~~vl~~Fr~g~--~~vLVaT~vleeGIDip~~~~VI~fD~p~s~~~yiQr~GRA~R~gs~~ivlv~~------~E~~~~~ 535 (1590)
+.+++.|...+ .-+|++|.+++-|||+..+|.||.||...|+-.-.|.-.||+|.|++--|.|.+ -|+.|.+
T Consensus 817 Q~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~TIEE~I~~ 896 (941)
T KOG0389|consen 817 QDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKSTIEEGILR 896 (941)
T ss_pred HHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEecCcHHHHHHH
Confidence 99999999876 568999999999999999999999999999999999999999999974444433 4555555
Q ss_pred hhhc
Q 000384 536 TALS 539 (1590)
Q Consensus 536 ~~~~ 539 (1590)
.+..
T Consensus 897 lA~~ 900 (941)
T KOG0389|consen 897 LAKT 900 (941)
T ss_pred HHHH
Confidence 4443
|
|
| >PRK09401 reverse gyrase; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.3e-24 Score=283.79 Aligned_cols=299 Identities=17% Similarity=0.187 Sum_probs=196.9
Q ss_pred CCCCCcHHHHHHHHHHh-cCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhhc---
Q 000384 42 INFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT--- 117 (1590)
Q Consensus 42 ~~~~pR~yQ~e~le~~~-~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~--- 117 (1590)
..+.|+++|.++++.++ ++|+++++|||+|||..++.++..+ . ..+.+++||+||++|+.|+++.++.+.
T Consensus 77 ~G~~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f~l~~~~~l-~-----~~g~~alIL~PTreLa~Qi~~~l~~l~~~~ 150 (1176)
T PRK09401 77 TGSKPWSLQRTWAKRLLLGESFAIIAPTGVGKTTFGLVMSLYL-A-----KKGKKSYIIFPTRLLVEQVVEKLEKFGEKV 150 (1176)
T ss_pred cCCCCcHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHHHHHHH-H-----hcCCeEEEEeccHHHHHHHHHHHHHHhhhc
Confidence 45799999999999887 5899999999999997544433322 2 134569999999999999999999874
Q ss_pred CCceEEEecCCCCCcc-chHHHHHhc-CCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCCC-c---------
Q 000384 118 DFEVEEYYGAKGVDEW-DSQCWQKEI-NKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNH-P--------- 185 (1590)
Q Consensus 118 ~~~v~~~~G~~~~d~~-~~~~w~~~~-~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~~-~--------- 185 (1590)
++.+..++|+.+...- ..+.+.... ..++|+|+||+.|.+.+. .+....+++||+||||++.++. .
T Consensus 151 ~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~~~k~id~~l~~lG 228 (1176)
T PRK09401 151 GCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLKSSKNIDKLLYLLG 228 (1176)
T ss_pred CceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhhcccchhhHHHhCC
Confidence 5667677766543211 122233333 368999999999998876 4566779999999999998531 1
Q ss_pred HH-HHHHHHHhcCC------------------------CCCcEEEEeccCCccCCCCChhcHHHHHHHHHhhcCCeeEee
Q 000384 186 YT-KIMKEFYHKSD------------------------NKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTI 240 (1590)
Q Consensus 186 ~~-~im~~~~~~~~------------------------~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~~~ 240 (1590)
|. ..+...+...+ ...+++.+|||...... .. .-+...+. +.+
T Consensus 229 F~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~-------~~--~l~~~ll~---~~v 296 (1176)
T PRK09401 229 FSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGN-------RV--KLFRELLG---FEV 296 (1176)
T ss_pred CCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccch-------HH--HHhhccce---EEe
Confidence 11 11111111111 02344445555321100 00 00000000 000
Q ss_pred cchhhhhhcccCcceeeEeccCCCCcccchhhhHHHhhhhhhhhHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHH
Q 000384 241 EDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYC 320 (1590)
Q Consensus 241 ~~~~~l~~~~~~p~~~~~~y~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 320 (1590)
..
T Consensus 297 ~~------------------------------------------------------------------------------ 298 (1176)
T PRK09401 297 GS------------------------------------------------------------------------------ 298 (1176)
T ss_pred cC------------------------------------------------------------------------------
Confidence 00
Q ss_pred HHHhhhhHHHHHHHHHHHHhHhHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcCcchhhhccccCCccccccCCCCCHHHH
Q 000384 321 LDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLH 400 (1590)
Q Consensus 321 ~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~ 400 (1590)
....+. ++.+ .. . ....|..
T Consensus 299 -----------------------------------------------~~~~~r----nI~~----~y--i---~~~~k~~ 318 (1176)
T PRK09401 299 -----------------------------------------------PVFYLR----NIVD----SY--I---VDEDSVE 318 (1176)
T ss_pred -----------------------------------------------cccccC----CceE----EE--E---EcccHHH
Confidence 000000 0000 00 0 0014666
Q ss_pred HHHHHHHhcCCCCCcEEEEEEehHHH---HHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCceE
Q 000384 401 ELLQLFLSFGKSTQVLCIIFVERIIA---AKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNL 477 (1590)
Q Consensus 401 ~L~~lL~~~~~~~~~k~IIFv~~r~t---a~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~~v 477 (1590)
.|.+++...+ ..+||||+++.. ++.|++.|.. .++++..+||+ | .+.+++|++|+++|
T Consensus 319 ~L~~ll~~l~----~~~LIFv~t~~~~~~ae~l~~~L~~----~gi~v~~~hg~------l-----~~~l~~F~~G~~~V 379 (1176)
T PRK09401 319 KLVELVKRLG----DGGLIFVPSDKGKEYAEELAEYLED----LGINAELAISG------F-----ERKFEKFEEGEVDV 379 (1176)
T ss_pred HHHHHHHhcC----CCEEEEEecccChHHHHHHHHHHHH----CCCcEEEEeCc------H-----HHHHHHHHCCCCCE
Confidence 7777776543 369999999877 9999999998 58999999998 5 23469999999999
Q ss_pred EEE----cccccccccCCC-ccEEEEccCCC------CHHHHHHHhccccc
Q 000384 478 LFA----TDVIEEGMHVPN-CSYVIRFDLPK------TVSSYIQSRGRARQ 517 (1590)
Q Consensus 478 LVa----T~vleeGIDip~-~~~VI~fD~p~------s~~~yiQr~GRA~R 517 (1590)
||| |+++++|||+|+ +++||+||.|. ....|.+|.||.-.
T Consensus 380 LVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~ 430 (1176)
T PRK09401 380 LVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLS 430 (1176)
T ss_pred EEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHh
Confidence 999 699999999999 89999999998 66789999999963
|
|
| >KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.3e-24 Score=239.76 Aligned_cols=313 Identities=22% Similarity=0.303 Sum_probs=231.7
Q ss_pred CCCCcHHHHHHHHHH-hcCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhh---cC
Q 000384 43 NFIPRIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVH---TD 118 (1590)
Q Consensus 43 ~~~pR~yQ~e~le~~-~~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~---~~ 118 (1590)
.-+|...|+.++..+ ++.|+++.+.+|+|||.++...+++.+. .......+++++|+++|+.|..++.+.. .+
T Consensus 46 FekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD---~~~ke~qalilaPtreLa~qi~~v~~~lg~~~~ 122 (397)
T KOG0327|consen 46 FEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQID---MSVKETQALILAPTRELAQQIQKVVRALGDHMD 122 (397)
T ss_pred cCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcC---cchHHHHHHHhcchHHHHHHHHHHHHhhhcccc
Confidence 346889999988655 5799999999999999998887776542 1223345899999999999999877775 46
Q ss_pred CceEEEecCCCCCccchHHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCCCcHHHHHHHHHhcCC
Q 000384 119 FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSD 198 (1590)
Q Consensus 119 ~~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~~~~~~im~~~~~~~~ 198 (1590)
.++..+.|+.+... +.-......++|+|.||+...+.++.+.+....+.+.|+||++.+... .+...+...+...+
T Consensus 123 ~~v~~~igg~~~~~---~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDEmLs~-gfkdqI~~if~~lp 198 (397)
T KOG0327|consen 123 VSVHACIGGTNVRR---EDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADEMLSR-GFKDQIYDIFQELP 198 (397)
T ss_pred eeeeeecCcccchh---hhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchHhhhcc-chHHHHHHHHHHcC
Confidence 77887888765442 111223346899999999999999999999999999999999998764 55555555666677
Q ss_pred CCCcEEEEeccCCccCCCCChhcHHHHHHHHHhhcCCeeEeecchhhhhhcccCcceeeEeccCCCCcccchhhhHHHhh
Q 000384 199 NKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSW 278 (1590)
Q Consensus 199 ~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~~~~~~~~l~~~~~~p~~~~~~y~~~~~~~~~l~~~~~~~~ 278 (1590)
...+++.+|||-.. .+..+-. ++...|....+.++...
T Consensus 199 ~~vQv~l~SAT~p~------------~vl~vt~----------------~f~~~pv~i~vkk~~lt-------------- 236 (397)
T KOG0327|consen 199 SDVQVVLLSATMPS------------DVLEVTK----------------KFMREPVRILVKKDELT-------------- 236 (397)
T ss_pred cchhheeecccCcH------------HHHHHHH----------------HhccCceEEEecchhhh--------------
Confidence 78899999999431 0111111 11111211111110000
Q ss_pred hhhhhhHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHhHHHHHHHHhhhhHHHH
Q 000384 279 SKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCK 358 (1590)
Q Consensus 279 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (1590)
T Consensus 237 -------------------------------------------------------------------------------- 236 (397)
T KOG0327|consen 237 -------------------------------------------------------------------------------- 236 (397)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHhhhcCcchhhhccccCCccccccCCCCCHHHHHHHHHHHhcCCCCCcEEEEEEehHHHHHHHHHHHhhCC
Q 000384 359 YFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVP 438 (1590)
Q Consensus 359 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~ 438 (1590)
++-+.+... +.. -.+|+..|.++.++ -.+.+|||+++.-+..|...|..
T Consensus 237 ------l~gikq~~i-------~v~-----------k~~k~~~l~dl~~~-----~~q~~if~nt~r~v~~l~~~L~~-- 285 (397)
T KOG0327|consen 237 ------LEGIKQFYI-------NVE-----------KEEKLDTLCDLYRR-----VTQAVIFCNTRRKVDNLTDKLRA-- 285 (397)
T ss_pred ------hhheeeeee-------ecc-----------ccccccHHHHHHHh-----hhcceEEecchhhHHHHHHHHhh--
Confidence 000000000 000 01277777777762 24689999999999999999966
Q ss_pred CCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCceEEEEcccccccccCCCccEEEEccCCCCHHHHHHHhcccccc
Q 000384 439 FLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQH 518 (1590)
Q Consensus 439 ~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fD~p~s~~~yiQr~GRA~R~ 518 (1590)
.++.+..+||. |.+.+|..++..|++|..+|||.|+.+.+|||+..|.+||+||.|.+..+|++|+||+||.
T Consensus 286 --~~~~~s~~~~d------~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvinydlP~~~~~yihR~gr~gr~ 357 (397)
T KOG0327|consen 286 --HGFTVSAIHGD------MEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRF 357 (397)
T ss_pred --CCceEEEeecc------cchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeeeeccccchhhhhhhccccccc
Confidence 57899999999 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEE
Q 000384 519 NSQFI 523 (1590)
Q Consensus 519 gs~~i 523 (1590)
|.+-+
T Consensus 358 grkg~ 362 (397)
T KOG0327|consen 358 GRKGV 362 (397)
T ss_pred CCCce
Confidence 98733
|
|
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-23 Score=268.76 Aligned_cols=156 Identities=20% Similarity=0.204 Sum_probs=120.9
Q ss_pred CCCCCCcHHHHHHHHHHhc----CCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhh
Q 000384 41 SINFIPRIYQLKVFEVAKR----RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVH 116 (1590)
Q Consensus 41 ~~~~~pR~yQ~e~le~~~~----~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~ 116 (1590)
...+.++++|.++++.+.. +++++.++||||||.+++.++.+.+. .++.+|||+|+++|+.|+.+.+++.
T Consensus 140 ~~~~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~------~g~~vLvLvPt~~L~~Q~~~~l~~~ 213 (679)
T PRK05580 140 FEPPTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLA------QGKQALVLVPEIALTPQMLARFRAR 213 (679)
T ss_pred cCCCCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHH------cCCeEEEEeCcHHHHHHHHHHHHHH
Confidence 3466899999999999874 67999999999999999988877765 2457999999999999999999999
Q ss_pred cCCceEEEecCCCCCccchHHHHHhcC-CCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCC---Cc-H-HHHH
Q 000384 117 TDFEVEEYYGAKGVDEWDSQCWQKEIN-KNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGN---HP-Y-TKIM 190 (1590)
Q Consensus 117 ~~~~v~~~~G~~~~d~~~~~~w~~~~~-~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~---~~-~-~~im 190 (1590)
++.++..++|+.+... ..+.|..... ..+|+|+|++.+ +..+.++++||+||+|...-. .+ | .+.+
T Consensus 214 fg~~v~~~~s~~s~~~-r~~~~~~~~~g~~~IVVgTrsal-------~~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~v 285 (679)
T PRK05580 214 FGAPVAVLHSGLSDGE-RLDEWRKAKRGEAKVVIGARSAL-------FLPFKNLGLIIVDEEHDSSYKQQEGPRYHARDL 285 (679)
T ss_pred hCCCEEEEECCCCHHH-HHHHHHHHHcCCCCEEEeccHHh-------cccccCCCEEEEECCCccccccCcCCCCcHHHH
Confidence 9999999999876543 3456776554 579999999876 456789999999999987522 12 2 1111
Q ss_pred HHHHhcCCCCCcEEEEeccCC
Q 000384 191 KEFYHKSDNKPKVFGMTASPV 211 (1590)
Q Consensus 191 ~~~~~~~~~~priLgLTATP~ 211 (1590)
.. .........++++||||.
T Consensus 286 a~-~ra~~~~~~~il~SATps 305 (679)
T PRK05580 286 AV-VRAKLENIPVVLGSATPS 305 (679)
T ss_pred HH-HHhhccCCCEEEEcCCCC
Confidence 11 122234577888899996
|
|
| >COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-23 Score=271.33 Aligned_cols=332 Identities=17% Similarity=0.200 Sum_probs=223.6
Q ss_pred CCCCCcHHHHHHHHHHh-cCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhhc---
Q 000384 42 INFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT--- 117 (1590)
Q Consensus 42 ~~~~pR~yQ~e~le~~~-~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~--- 117 (1590)
....|+.||.++++.+. ++|+||+.+||||||.+++++|.+.+. ..+..++|+|.||+||++.|.++++++.
T Consensus 67 g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l----~~~~a~AL~lYPtnALa~DQ~~rl~~~~~~~ 142 (851)
T COG1205 67 GIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLL----RDPSARALLLYPTNALANDQAERLRELISDL 142 (851)
T ss_pred ccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHh----hCcCccEEEEechhhhHhhHHHHHHHHHHhC
Confidence 34459999999999997 589999999999999999999888665 3445579999999999999999999864
Q ss_pred C--CceEEEecCCCCCccchHHHHHhcCCCcEEEEcHHHHHHHHHh----cCcCccceeEEEEeccccccCC--CcHHHH
Q 000384 118 D--FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK----AFLSLDIVCFIVIDECHHATGN--HPYTKI 189 (1590)
Q Consensus 118 ~--~~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~----~~~~l~~i~lII~DEaH~~~~~--~~~~~i 189 (1590)
+ +.+..|+|+..... .+ ...-+.++|+++||+||.-++.. ..+.+.++.+||+||+|-+.+- +..+.+
T Consensus 143 ~~~v~~~~y~Gdt~~~~--r~--~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~vA~l 218 (851)
T COG1205 143 PGKVTFGRYTGDTPPEE--RR--AIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEVALL 218 (851)
T ss_pred CCcceeeeecCCCChHH--HH--HHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhHHHHH
Confidence 3 78888999875432 11 22346899999999999774432 2344677999999999999864 234444
Q ss_pred HHHHHh---cCCCCCcEEEEeccCCccCCCCChhcHHHHHHHHHhhcCCeeEe-ecchhhhhhcccCcceeeEeccCCCC
Q 000384 190 MKEFYH---KSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFT-IEDKTEMEVFVPSAKESCRFYDQSKF 265 (1590)
Q Consensus 190 m~~~~~---~~~~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~~-~~~~~~l~~~~~~p~~~~~~y~~~~~ 265 (1590)
+++... .....|++++.|||....+ + ..+...+..... +.+ ...+......+.+.+...
T Consensus 219 lRRL~~~~~~~~~~~q~i~~SAT~~np~---------e---~~~~l~~~~f~~~v~~-----~g~~~~~~~~~~~~p~~~ 281 (851)
T COG1205 219 LRRLLRRLRRYGSPLQIICTSATLANPG---------E---FAEELFGRDFEVPVDE-----DGSPRGLRYFVRREPPIR 281 (851)
T ss_pred HHHHHHHHhccCCCceEEEEeccccChH---------H---HHHHhcCCcceeeccC-----CCCCCCceEEEEeCCcch
Confidence 444433 3456899999999976442 1 222222222222 110 111121122222221100
Q ss_pred cccchhhhHHHhhhhhhhhHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHhHHH
Q 000384 266 CGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQE 345 (1590)
Q Consensus 266 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~ 345 (1590)
.. ...
T Consensus 282 ~~---------------------------------------~~~------------------------------------ 286 (851)
T COG1205 282 EL---------------------------------------AES------------------------------------ 286 (851)
T ss_pred hh---------------------------------------hhh------------------------------------
Confidence 00 000
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHhhhcCcchhhhccccCCccccccCCCCCHHHHHHHHHHHhcCCCCCcEEEEEEehHH
Q 000384 346 ECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERII 425 (1590)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~ 425 (1590)
+.. ....-...+...+- ..+.++|+|+.+|.
T Consensus 287 ----------------------~r~-----------------------s~~~~~~~~~~~~~----~~~~~tL~F~~sr~ 317 (851)
T COG1205 287 ----------------------IRR-----------------------SALAELATLAALLV----RNGIQTLVFFRSRK 317 (851)
T ss_pred ----------------------ccc-----------------------chHHHHHHHHHHHH----HcCceEEEEEehhh
Confidence 000 00000011111111 34568999999999
Q ss_pred HHHHHHH----HHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCceEEEEcccccccccCCCccEEEEccC
Q 000384 426 AAKVVER----FVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDL 501 (1590)
Q Consensus 426 ta~~L~~----~L~~~~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fD~ 501 (1590)
.++.+.. .+......-...+....|. |..++|.++...|++|++.++++|+++|-||||.+++.||.+..
T Consensus 318 ~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~------~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ldavi~~g~ 391 (851)
T COG1205 318 QVELLYLSPRRRLVREGGKLLDAVSTYRAG------LHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIAYGY 391 (851)
T ss_pred hhhhhhhchhHHHhhcchhhhhheeecccc------CCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhhhHhhcCC
Confidence 9988862 2222210011234444454 89999999999999999999999999999999999999999999
Q ss_pred CC-CHHHHHHHhccccccCce-EEEEecc
Q 000384 502 PK-TVSSYIQSRGRARQHNSQ-FILMLER 528 (1590)
Q Consensus 502 p~-s~~~yiQr~GRA~R~gs~-~ivlv~~ 528 (1590)
|. +..+++||.|||||.++. .++++..
T Consensus 392 P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~ 420 (851)
T COG1205 392 PGVSVLSFRQRAGRAGRRGQESLVLVVLR 420 (851)
T ss_pred CCchHHHHHHhhhhccCCCCCceEEEEeC
Confidence 99 999999999999999944 5555544
|
|
| >KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.8e-23 Score=252.47 Aligned_cols=403 Identities=19% Similarity=0.210 Sum_probs=247.6
Q ss_pred CCCCCCcHHHHHHHHHHh----c-------CCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCC-----eEEEEEecChh
Q 000384 41 SINFIPRIYQLKVFEVAK----R-------RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFK-----KLIIFLAPTVH 104 (1590)
Q Consensus 41 ~~~~~pR~yQ~e~le~~~----~-------~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~-----~~vl~LvPt~~ 104 (1590)
...-.+||||.|+++.+- + ..+|++.++|+|||+..+.+|+.+++ ..+. .+.+|++|. .
T Consensus 234 ~l~~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLr----q~P~~~~~~~k~lVV~P~-s 308 (776)
T KOG0390|consen 234 LLKKILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLR----QFPQAKPLINKPLVVAPS-S 308 (776)
T ss_pred cHhhhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHH----hCcCccccccccEEEccH-H
Confidence 345679999999999863 1 35899999999999999999999987 4455 678999997 8
Q ss_pred hHHHHHHHHHhhcC---CceEEEecCCCCCccch-HHHHHhc---CCCcEEEEcHHHHHHHHHhcCcCccceeEEEEecc
Q 000384 105 LVHQQYDVIRVHTD---FEVEEYYGAKGVDEWDS-QCWQKEI---NKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDEC 177 (1590)
Q Consensus 105 Lv~Qq~~~i~~~~~---~~v~~~~G~~~~d~~~~-~~w~~~~---~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEa 177 (1590)
|+..|+++|.+|.+ +.+..++|.... .|.. ..|.... -..-|++.+++.+.+..+. +.+..++++|+||.
T Consensus 309 Lv~nWkkEF~KWl~~~~i~~l~~~~~~~~-~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~--il~~~~glLVcDEG 385 (776)
T KOG0390|consen 309 LVNNWKKEFGKWLGNHRINPLDFYSTKKS-SWIKLKSILFLGYKQFTTPVLIISYETASDYCRK--ILLIRPGLLVCDEG 385 (776)
T ss_pred HHHHHHHHHHHhccccccceeeeecccch-hhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH--HhcCCCCeEEECCC
Confidence 99999999999975 466666776543 2322 2233222 2357889999999876654 55688999999999
Q ss_pred ccccCCCc--HHHHHHHHHhcCCCCCcEEEEeccCCccCC--------CCCh---------------------------h
Q 000384 178 HHATGNHP--YTKIMKEFYHKSDNKPKVFGMTASPVVRKG--------VSSA---------------------------M 220 (1590)
Q Consensus 178 H~~~~~~~--~~~im~~~~~~~~~~priLgLTATP~~~~~--------~~~~---------------------------~ 220 (1590)
|+.+.... +..+++ -..||++.||+||++|+- ...+ +
T Consensus 386 HrlkN~~s~~~kaL~~------l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e 459 (776)
T KOG0390|consen 386 HRLKNSDSLTLKALSS------LKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEE 459 (776)
T ss_pred CCccchhhHHHHHHHh------cCCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchh
Confidence 99975321 232322 257999999999999871 0000 0
Q ss_pred --cHHHHHHHHHhhcCCeeEeecchhhhhhcccCcceeeEeccCCCCcccchhhhHHHhhhhhhhhHHHHHhhhhhhhcc
Q 000384 221 --DCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKD 298 (1590)
Q Consensus 221 --~~~~~i~~Le~~l~~~i~~~~~~~~l~~~~~~p~~~~~~y~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 298 (1590)
.-...+.+|-.+.+.-+...+. +.+.+++|.-.+.++++.+...+.. .+.++
T Consensus 460 ~~~~~~rl~eL~~~t~~fi~rrt~-~il~k~LP~k~e~vv~~n~t~~Q~~--------~~~~l----------------- 513 (776)
T KOG0390|consen 460 DREREERLQELRELTNKFILRRTG-DILLKYLPGKYEYVVFCNPTPIQKE--------LYKKL----------------- 513 (776)
T ss_pred hhhhHHHHHHHHHHHHhheeeccc-chhhhhCCCceeEEEEeCCcHHHHH--------HHHHH-----------------
Confidence 0011122233322222222221 3455555555555555544332100 00000
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHhHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcCcchhh
Q 000384 299 MDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKI 378 (1590)
Q Consensus 299 ~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 378 (1590)
.+.. ....+.... ....-.|...|..-.... ..+ .......+......
T Consensus 514 -~~~~--~~~~~~~~~---l~~~~~L~k~cnhP~L~~-~~~-------------~~~~e~~~~~~~~~------------ 561 (776)
T KOG0390|consen 514 -LDSM--KMRTLKGYA---LELITKLKKLCNHPSLLL-LCE-------------KTEKEKAFKNPALL------------ 561 (776)
T ss_pred -HHHH--Hhhhhhcch---hhHHHHHHHHhcCHHhhc-ccc-------------cccccccccChHhh------------
Confidence 0000 000000000 000000000000000000 000 00000000000000
Q ss_pred hccccCCcccc-ccCCCCCHHHHHHHHHHHhcCCCCCcEEEEEEehHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCC
Q 000384 379 FLDFGFDYSKA-VDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDA 457 (1590)
Q Consensus 379 ~~~~~~~~~~~-~~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~ 457 (1590)
.. ....+. ...+..+.|+..|..++.........++.+..+.+.+.+.+..+++- .|+.+..++|.
T Consensus 562 -~~--~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~----~g~~~~rLdG~------ 628 (776)
T KOG0390|consen 562 -LD--PGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRW----RGYEVLRLDGK------ 628 (776)
T ss_pred -hc--ccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhh----cCceEEEEcCC------
Confidence 00 000000 11223488999999998655544455666667788888877777766 58999999999
Q ss_pred CCHHHHHHHHHHhcCCC---ceEEEEcccccccccCCCccEEEEccCCCCHHHHHHHhccccccCceEEEEecc
Q 000384 458 LTPKVQKEVLESFRGGK---VNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLER 528 (1590)
Q Consensus 458 ~~~~~r~~vl~~Fr~g~---~~vLVaT~vleeGIDip~~~~VI~fD~p~s~~~yiQr~GRA~R~gs~~ivlv~~ 528 (1590)
|+.++|..+++.|.+-. .-+|.+|.++++||++-+++-||.||..||+..-.|+++||.|.|++..+++++
T Consensus 629 ~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYr 702 (776)
T KOG0390|consen 629 TSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYR 702 (776)
T ss_pred CchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEE
Confidence 89999999999998743 457888999999999999999999999999999999999999999997777766
|
|
| >KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-24 Score=242.19 Aligned_cols=322 Identities=20% Similarity=0.236 Sum_probs=240.4
Q ss_pred CCCCCcHHHHHHHHHHhc-CCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhh---c
Q 000384 42 INFIPRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVH---T 117 (1590)
Q Consensus 42 ~~~~pR~yQ~e~le~~~~-~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~---~ 117 (1590)
..-+|.|.|...++.++. +++...+-||||||.++++++.+.+.... ..+-+++++.||++|+.|..+.++.. +
T Consensus 40 g~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s--~~g~RalilsptreLa~qtlkvvkdlgrgt 117 (529)
T KOG0337|consen 40 GFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS--QTGLRALILSPTRELALQTLKVVKDLGRGT 117 (529)
T ss_pred hcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc--ccccceeeccCcHHHHHHHHHHHHHhcccc
Confidence 345689999999999885 88999999999999999999887765222 34557999999999999998888764 5
Q ss_pred CCceEEEecCCCCCccchHHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCCCcHHHHHHHHHhcC
Q 000384 118 DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS 197 (1590)
Q Consensus 118 ~~~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~~~~~~im~~~~~~~ 197 (1590)
+++...++|+.... +.|.....+.+||++||++++.....-.+.++.+.+|||||++++..- .|...+.+.+...
T Consensus 118 ~lr~s~~~ggD~~e----eqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadrlfem-gfqeql~e~l~rl 192 (529)
T KOG0337|consen 118 KLRQSLLVGGDSIE----EQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADRLFEM-GFQEQLHEILSRL 192 (529)
T ss_pred chhhhhhcccchHH----HHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhhHHHhh-hhHHHHHHHHHhC
Confidence 78888777765433 467777789999999999998876666678899999999999998764 5777777777777
Q ss_pred CCCCcEEEEeccCCccCCCCChhcHHHHHHHHHhhcCCeeEeecchhhhhhcccCcceeeEeccCCCCcccchhhhHHHh
Q 000384 198 DNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVS 277 (1590)
Q Consensus 198 ~~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~~~~~~~~l~~~~~~p~~~~~~y~~~~~~~~~l~~~~~~~ 277 (1590)
+...+.+.+|||..+. |- +..+---.+...+. .
T Consensus 193 ~~~~QTllfSatlp~~---------------lv--------------~fakaGl~~p~lVR-l----------------- 225 (529)
T KOG0337|consen 193 PESRQTLLFSATLPRD---------------LV--------------DFAKAGLVPPVLVR-L----------------- 225 (529)
T ss_pred CCcceEEEEeccCchh---------------hH--------------HHHHccCCCCceEE-e-----------------
Confidence 7666999999995421 00 00000000000000 0
Q ss_pred hhhhhhhHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHhHHHHHHHHhhhhHHH
Q 000384 278 WSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQC 357 (1590)
Q Consensus 278 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (1590)
++..+++
T Consensus 226 --------------------dvetkis----------------------------------------------------- 232 (529)
T KOG0337|consen 226 --------------------DVETKIS----------------------------------------------------- 232 (529)
T ss_pred --------------------ehhhhcc-----------------------------------------------------
Confidence 0000000
Q ss_pred HHHHHHHHHHHhhhcCcchhhhccccCCccccccCCCCCHHHHHHHHHHHhcCCCCCcEEEEEEehHHHHHHHHHHHhhC
Q 000384 358 KYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKV 437 (1590)
Q Consensus 358 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~ 437 (1590)
+.++..-. ......|...|+.++..... +.++||||.++..++.+..+|..
T Consensus 233 -----e~lk~~f~---------------------~~~~a~K~aaLl~il~~~~~--~~~t~vf~~tk~hve~~~~ll~~- 283 (529)
T KOG0337|consen 233 -----ELLKVRFF---------------------RVRKAEKEAALLSILGGRIK--DKQTIVFVATKHHVEYVRGLLRD- 283 (529)
T ss_pred -----hhhhhhee---------------------eeccHHHHHHHHHHHhcccc--ccceeEEecccchHHHHHHHHHh-
Confidence 00000000 00114578888888876542 45899999999999999999988
Q ss_pred CCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCceEEEEcccccccccCCCccEEEEccCCCCHHHHHHHhccccc
Q 000384 438 PFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQ 517 (1590)
Q Consensus 438 ~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fD~p~s~~~yiQr~GRA~R 517 (1590)
.++.+..+.|. |.+.-|..-+.+|+.++.++||.|+++.+|+|||-.+.||+||.|....-|++|+||+.|
T Consensus 284 ---~g~~~s~iyss------lD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~ar 354 (529)
T KOG0337|consen 284 ---FGGEGSDIYSS------LDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVAR 354 (529)
T ss_pred ---cCCCccccccc------cChHhhhhccccccCCccceEEEehhhhccCCCccccccccccCCCCCceEEEEecchhh
Confidence 56777777777 899999999999999999999999999999999999999999999999999999999988
Q ss_pred cCce---EEEEecc
Q 000384 518 HNSQ---FILMLER 528 (1590)
Q Consensus 518 ~gs~---~ivlv~~ 528 (1590)
+|+. |-++++.
T Consensus 355 agrtg~aYs~V~~~ 368 (529)
T KOG0337|consen 355 AGRTGRAYSLVAST 368 (529)
T ss_pred ccccceEEEEEecc
Confidence 8853 4444443
|
|
| >TIGR03714 secA2 accessory Sec system translocase SecA2 | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-22 Score=253.04 Aligned_cols=127 Identities=12% Similarity=0.168 Sum_probs=106.6
Q ss_pred CHHHHHHHHHHHhcCCCCCcEEEEEEehHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCc
Q 000384 396 STKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKV 475 (1590)
Q Consensus 396 s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~ 475 (1590)
..|...+++.+.+.. ..+.++||||+++..++.|.+.|.+ .++.+..+||. +..+++..+..+|+.|
T Consensus 407 ~~K~~ai~~~i~~~~-~~~~pvLIft~s~~~se~ls~~L~~----~gi~~~~L~a~------~~~~E~~ii~~ag~~g-- 473 (762)
T TIGR03714 407 PEKLMATLEDVKEYH-ETGQPVLLITGSVEMSEIYSELLLR----EGIPHNLLNAQ------NAAKEAQIIAEAGQKG-- 473 (762)
T ss_pred HHHHHHHHHHHHHHh-hCCCCEEEEECcHHHHHHHHHHHHH----CCCCEEEecCC------ChHHHHHHHHHcCCCC--
Confidence 578888988886643 3456899999999999999999998 57889999998 7888887777777777
Q ss_pred eEEEEcccccccccCC---------CccEEEEccCCCCHHHHHHHhccccccCce--EEEEeccchHHhhhh
Q 000384 476 NLLFATDVIEEGMHVP---------NCSYVIRFDLPKTVSSYIQSRGRARQHNSQ--FILMLERSERSVTDT 536 (1590)
Q Consensus 476 ~vLVaT~vleeGIDip---------~~~~VI~fD~p~s~~~yiQr~GRA~R~gs~--~ivlv~~~E~~~~~~ 536 (1590)
.|+|||+++++|+||+ ++++||+|++|..... +||+||+||.|.. .+.++..++..|+.+
T Consensus 474 ~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~~is~eD~l~~~~ 544 (762)
T TIGR03714 474 AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQFFVSLEDDLIKRW 544 (762)
T ss_pred eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEEEEccchhhhhhc
Confidence 7999999999999999 8999999999988766 9999999999854 556666666666654
|
Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii. |
| >TIGR00595 priA primosomal protein N' | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-22 Score=250.58 Aligned_cols=134 Identities=23% Similarity=0.316 Sum_probs=101.8
Q ss_pred EEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhhcCCceEEEecCCCCCccchHHHHHhc
Q 000384 63 IAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEI 142 (1590)
Q Consensus 63 Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~~~~v~~~~G~~~~d~~~~~~w~~~~ 142 (1590)
++.++||||||.+++.++.+.+. .++.++||+|+++|+.|+++.++..++.++..++|+.+... ..+.|....
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~------~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~e-r~~~~~~~~ 73 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLA------LGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSE-KLQAWRKVK 73 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHH------cCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHH-HHHHHHHHH
Confidence 47899999999999888877765 34569999999999999999999999999999999875443 345677655
Q ss_pred C-CCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCC---Cc-HH-HHHHHHHhcCCCCCcEEEEeccCC
Q 000384 143 N-KNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGN---HP-YT-KIMKEFYHKSDNKPKVFGMTASPV 211 (1590)
Q Consensus 143 ~-~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~---~~-~~-~im~~~~~~~~~~priLgLTATP~ 211 (1590)
. ..+|+|+|+..+ +..+.++++||+||+|+..-. .+ |. +-+..+ ........++++||||.
T Consensus 74 ~g~~~IVVGTrsal-------f~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~-ra~~~~~~vil~SATPs 140 (505)
T TIGR00595 74 NGEILVVIGTRSAL-------FLPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVY-RAKKFNCPVVLGSATPS 140 (505)
T ss_pred cCCCCEEECChHHH-------cCcccCCCEEEEECCCccccccccCCCCcHHHHHHH-HHHhcCCCEEEEeCCCC
Confidence 4 579999999876 456789999999999997621 22 21 112211 12234577889999996
|
All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK14701 reverse gyrase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.9e-23 Score=280.50 Aligned_cols=132 Identities=21% Similarity=0.166 Sum_probs=100.6
Q ss_pred CCCCCcHHHHHHHHHHh-cCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhhc---
Q 000384 42 INFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT--- 117 (1590)
Q Consensus 42 ~~~~pR~yQ~e~le~~~-~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~--- 117 (1590)
..++|+++|.++++.++ ++++++.+|||+|||++++.+...... .+.+++||+||++|+.|+++.++.+.
T Consensus 76 ~G~~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~------~g~~aLVl~PTreLa~Qi~~~l~~l~~~~ 149 (1638)
T PRK14701 76 TGFEFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLAL------KGKKCYIILPTTLLVKQTVEKIESFCEKA 149 (1638)
T ss_pred hCCCCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHh------cCCeEEEEECHHHHHHHHHHHHHHHHhhc
Confidence 45689999999999987 589999999999999965544333221 34569999999999999999999853
Q ss_pred --CCceEEEecCCCCCccchHHHHHhcC-CCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccC
Q 000384 118 --DFEVEEYYGAKGVDEWDSQCWQKEIN-KNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATG 182 (1590)
Q Consensus 118 --~~~v~~~~G~~~~d~~~~~~w~~~~~-~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~ 182 (1590)
++++..++|+.+... ....|..... .++|+|+||+.|.+.+... . ..++++||+||||++.+
T Consensus 150 ~~~v~v~~~~g~~s~~e-~~~~~~~l~~g~~dILV~TPgrL~~~~~~l-~-~~~i~~iVVDEAD~ml~ 214 (1638)
T PRK14701 150 NLDVRLVYYHSNLRKKE-KEEFLERIENGDFDILVTTAQFLARNFPEM-K-HLKFDFIFVDDVDAFLK 214 (1638)
T ss_pred CCceeEEEEeCCCCHHH-HHHHHHHHhcCCCCEEEECCchhHHhHHHH-h-hCCCCEEEEECceeccc
Confidence 456677888765432 2233444443 5899999999998776542 2 26799999999999975
|
|
| >PRK09200 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.8e-22 Score=253.17 Aligned_cols=128 Identities=13% Similarity=0.155 Sum_probs=108.7
Q ss_pred CHHHHHHHHHHHhcCCCCCcEEEEEEehHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCc
Q 000384 396 STKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKV 475 (1590)
Q Consensus 396 s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~ 475 (1590)
..|...|++.+.... ..+.++||||+++..++.|...|.. .++.+..+||. +..+++..+..+++.|
T Consensus 411 ~~K~~al~~~i~~~~-~~~~pvLIf~~t~~~se~l~~~L~~----~gi~~~~L~~~------~~~~e~~~i~~ag~~g-- 477 (790)
T PRK09200 411 DEKYKAVIEEVKERH-ETGRPVLIGTGSIEQSETFSKLLDE----AGIPHNLLNAK------NAAKEAQIIAEAGQKG-- 477 (790)
T ss_pred HHHHHHHHHHHHHHH-hcCCCEEEEeCcHHHHHHHHHHHHH----CCCCEEEecCC------ccHHHHHHHHHcCCCC--
Confidence 678888888886543 2466899999999999999999998 58899999998 6777777788777776
Q ss_pred eEEEEcccccccccC---CCcc-----EEEEccCCCCHHHHHHHhccccccCce--EEEEeccchHHhhhh
Q 000384 476 NLLFATDVIEEGMHV---PNCS-----YVIRFDLPKTVSSYIQSRGRARQHNSQ--FILMLERSERSVTDT 536 (1590)
Q Consensus 476 ~vLVaT~vleeGIDi---p~~~-----~VI~fD~p~s~~~yiQr~GRA~R~gs~--~ivlv~~~E~~~~~~ 536 (1590)
+|+|||+++++|+|| |++. +||+||.|.+.+.|+||+||+||.|.. .+.++..++..|+.+
T Consensus 478 ~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~is~eD~l~~~~ 548 (790)
T PRK09200 478 AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFISLEDDLLKRF 548 (790)
T ss_pred eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEEEcchHHHHHhh
Confidence 799999999999999 6898 999999999999999999999999964 556666666677654
|
|
| >PF03368 Dicer_dimer: Dicer dimerisation domain; InterPro: IPR005034 This domain is found in members of the Dicer protein family of dsRNA nucleases | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.1e-24 Score=201.42 Aligned_cols=86 Identities=42% Similarity=0.853 Sum_probs=65.8
Q ss_pred hHHHHHHHhhhCCCCCCCCCcceEEEEecCCeEEEEEEccCCCCcceeecCCccCHHHHHHHHHHHHHHHHHhcCCCCCC
Q 000384 572 SVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDH 651 (1590)
Q Consensus 572 ai~ll~~yc~~Lp~d~~~~~~P~~~~~~~~~~~~~~v~LP~~~~l~~~~g~~~~sk~~Ak~~AAf~Ac~~L~~~g~ldd~ 651 (1590)
|+++|+|||++||+|.|+.++|.|.+...+++|+|+|+||.++|++.|.|.+|++|+.|||+|||+||++||++|+||||
T Consensus 1 Ai~lL~~yC~~Lp~d~~~~~~P~~~~~~~~~~~~c~v~LP~~~pi~~i~g~~~~sk~~AK~sAAf~Ac~~L~~~g~ldd~ 80 (90)
T PF03368_consen 1 AISLLNRYCSTLPSDSFTNLKPEFEIEKIGSGFICTVILPINSPIRSIEGPPMRSKKLAKRSAAFEACKKLHEAGELDDH 80 (90)
T ss_dssp HHHHHHHHHTTSSS-TT--SS-EEEEEE--G-EEEEEE--TT-SS--EEEE--SSHHHHHHHHHHHHHHHHHHH-S-TTT
T ss_pred CHHHHHHHHhcCCCCCCccCCceEEEEEcCCcEEEEEECCCCCCCCeEEccccccHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 78999999999999999999999999999899999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 000384 652 LLPSVE 657 (1590)
Q Consensus 652 L~P~~~ 657 (1590)
|+|..+
T Consensus 81 L~P~~~ 86 (90)
T PF03368_consen 81 LLPISK 86 (90)
T ss_dssp S--HHH
T ss_pred cCCCCC
Confidence 999854
|
This entry represents a dsRNA-binding domain. RNA interference (RNAi) is an ancient gene-silencing process that plays a fundamental role in diverse eukaryotic functions including viral defence, chromatin remodelling, genome rearrangement, developmental timing, brain morphogenesis, and stem cell maintenance. All RNAi pathways require the multidomain ribonuclease Dicer, which initiates RNAi by cleaving double-stranded RNA (dsRNA) substrates into small fragments ~25 nuleotides in length. A typical eukaryotic Dicer consists of a helicase domain (PDOC51192 from PROSITEDOC), a domain of unknown function, and a PAZ domain (PDOC50821 from PROSITEDOC) at the amino (N)-terminus as well as two ribonuclease III domains (PDOC00448 from PROSITEDOC) and a dsRNA-binding domain (dsRBD) (PDOC50137 from PROSITEDOC) at the carboxy (C)-terminus. The domain of unknown function of ~100 amino acids is predicted to adopt the canonical alpha-beta-beta-beta-alpha-fold found in all dsRBDs [, , , ].; GO: 0016891 endoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2KOU_A. |
| >COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-22 Score=254.57 Aligned_cols=328 Identities=21% Similarity=0.281 Sum_probs=227.7
Q ss_pred CCCCCCCC--CCCCCCCCCCCcHHHHHHHHHHhc-------CCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEE
Q 000384 28 HDHAVDGP--SSSTNSINFIPRIYQLKVFEVAKR-------RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIF 98 (1590)
Q Consensus 28 ~~~~~~~~--~~~~~~~~~~pR~yQ~e~le~~~~-------~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~ 98 (1590)
..+.+|.+ ........|+.++-|..+++.+++ .+-+||++.|-|||-+|+-.+..... .++.|.|
T Consensus 575 ~af~~d~~~q~~F~~~FPyeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~------~GKQVAv 648 (1139)
T COG1197 575 FAFPPDTEWQEEFEASFPYEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVM------DGKQVAV 648 (1139)
T ss_pred CCCCCChHHHHHHHhcCCCcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhc------CCCeEEE
Confidence 33444444 444556788999999999999974 57799999999999999887655433 4577999
Q ss_pred EecChhhHHHHHHHHHhhc---CCceEEEecCCCCCccchHHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEe
Q 000384 99 LAPTVHLVHQQYDVIRVHT---DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVID 175 (1590)
Q Consensus 99 LvPt~~Lv~Qq~~~i~~~~---~~~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~D 175 (1590)
||||--|++|.++.|+.-+ +++|..+.--.+..+.....-...-...||+|+|+..| +..+.+.++.|+|+|
T Consensus 649 LVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL-----~kdv~FkdLGLlIID 723 (1139)
T COG1197 649 LVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLL-----SKDVKFKDLGLLIID 723 (1139)
T ss_pred EcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhh-----CCCcEEecCCeEEEe
Confidence 9999999999999999854 55666655433222211111122235789999999877 456788999999999
Q ss_pred ccccccCCCcHHHHHHHHHhcCCCCCcEEEEeccCCccCCCCChhcHHHHHHHHHhhcCCeeEeec-chhhhhhcccCcc
Q 000384 176 ECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIE-DKTEMEVFVPSAK 254 (1590)
Q Consensus 176 EaH~~~~~~~~~~im~~~~~~~~~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~~~~-~~~~l~~~~~~p~ 254 (1590)
|-||..-.| |+.++.......+|-|||||+...-.-+ ..-+++| |.+.||. +|-.+..|+.
T Consensus 724 EEqRFGVk~------KEkLK~Lr~~VDvLTLSATPIPRTL~Ms----m~GiRdl-----SvI~TPP~~R~pV~T~V~--- 785 (1139)
T COG1197 724 EEQRFGVKH------KEKLKELRANVDVLTLSATPIPRTLNMS----LSGIRDL-----SVIATPPEDRLPVKTFVS--- 785 (1139)
T ss_pred chhhcCccH------HHHHHHHhccCcEEEeeCCCCcchHHHH----Hhcchhh-----hhccCCCCCCcceEEEEe---
Confidence 999997543 3444445677899999999997631100 0001111 1111111 1110000000
Q ss_pred eeeEeccCCCCcccchhhhHHHhhhhhhhhHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 000384 255 ESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVK 334 (1590)
Q Consensus 255 ~~~~~y~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~a~~~~~ 334 (1590)
.|
T Consensus 786 ----~~-------------------------------------------------------------------------- 787 (1139)
T COG1197 786 ----EY-------------------------------------------------------------------------- 787 (1139)
T ss_pred ----cC--------------------------------------------------------------------------
Confidence 00
Q ss_pred HHHHHhHhHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcCcchhhhccccCCccccccCCCCCHHHHHHHH-HHHhcCCCC
Q 000384 335 ICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQ-LFLSFGKST 413 (1590)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~-lL~~~~~~~ 413 (1590)
++.+ +.+ ++.+. ..
T Consensus 788 -------------------------------------------------------------d~~~--ireAI~REl--~R 802 (1139)
T COG1197 788 -------------------------------------------------------------DDLL--IREAILREL--LR 802 (1139)
T ss_pred -------------------------------------------------------------ChHH--HHHHHHHHH--hc
Confidence 0000 000 11111 23
Q ss_pred CcEEEEEEehHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCceEEEEcccccccccCCCc
Q 000384 414 QVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNC 493 (1590)
Q Consensus 414 ~~k~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~~vLVaT~vleeGIDip~~ 493 (1590)
+.++....|++.+...+.+.|+.+ .+..++.+.||. |+.++-++++.+|-+|+.+|||||.+.|.|||||++
T Consensus 803 gGQvfYv~NrV~~Ie~~~~~L~~L--VPEarI~vaHGQ------M~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnA 874 (1139)
T COG1197 803 GGQVFYVHNRVESIEKKAERLREL--VPEARIAVAHGQ------MRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNA 874 (1139)
T ss_pred CCEEEEEecchhhHHHHHHHHHHh--CCceEEEEeecC------CCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCC
Confidence 557777789999999999988886 467889999999 999999999999999999999999999999999999
Q ss_pred cEEEEccCCC-CHHHHHHHhccccccCce-EEEEeccchHHhhh
Q 000384 494 SYVIRFDLPK-TVSSYIQSRGRARQHNSQ-FILMLERSERSVTD 535 (1590)
Q Consensus 494 ~~VI~fD~p~-s~~~yiQr~GRA~R~gs~-~ivlv~~~E~~~~~ 535 (1590)
|.+|.-+... -+.+..|-|||+||...+ |.+++.+..+.|.+
T Consensus 875 NTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~k~lT~ 918 (1139)
T COG1197 875 NTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQKALTE 918 (1139)
T ss_pred ceEEEeccccccHHHHHHhccccCCccceEEEEEeecCccccCH
Confidence 9999877543 788999999999998765 77777664444443
|
|
| >TIGR00963 secA preprotein translocase, SecA subunit | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.4e-22 Score=249.28 Aligned_cols=417 Identities=14% Similarity=0.138 Sum_probs=230.4
Q ss_pred CCCCcHHHHHHHHHHhcCCEEEEeCCCChHHHHHHHHHH-HHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhh---cC
Q 000384 43 NFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIK-DIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVH---TD 118 (1590)
Q Consensus 43 ~~~pR~yQ~e~le~~~~~n~Ii~~~TGsGKTliailli~-~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~---~~ 118 (1590)
.+.|++.|....-. +.++.|..+.||+|||++|.+++. ..+. ++.|.+++||..|+.|.++.+... +|
T Consensus 54 g~~p~~vQlig~~~-l~~G~Iaem~TGeGKTLva~lpa~l~aL~-------G~~V~VvTpt~~LA~qdae~~~~l~~~LG 125 (745)
T TIGR00963 54 GMRPFDVQLIGGIA-LHKGKIAEMKTGEGKTLTATLPAYLNALT-------GKGVHVVTVNDYLAQRDAEWMGQVYRFLG 125 (745)
T ss_pred CCCccchHHhhhhh-hcCCceeeecCCCccHHHHHHHHHHHHHh-------CCCEEEEcCCHHHHHHHHHHHHHHhccCC
Confidence 45566666665543 345569999999999999999874 3332 234899999999999999888774 58
Q ss_pred CceEEEecCCCCCccchHHHHHhcCCCcEEEEcHHHH-HHHHHhcC------cCccceeEEEEeccccccCCCcHHHHHH
Q 000384 119 FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQIL-LDALRKAF------LSLDIVCFIVIDECHHATGNHPYTKIMK 191 (1590)
Q Consensus 119 ~~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L-~~~l~~~~------~~l~~i~lII~DEaH~~~~~~~~~~im~ 191 (1590)
++++.++|++.... +...-.++|+++|+..| .++++.+. +.+..++++|+||+|.+.-+..-..++.
T Consensus 126 Lsv~~i~g~~~~~~------r~~~y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLii 199 (745)
T TIGR00963 126 LSVGLILSGMSPEE------RREAYACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLII 199 (745)
T ss_pred CeEEEEeCCCCHHH------HHHhcCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhh
Confidence 99999999875321 22223589999999999 88887652 4578899999999999864211111110
Q ss_pred HHHhcCCCCCcEEEEeccCCccCCCCC-----------hhcHHHHHHHHHhhcCCe-eEeecch-------hhhhh----
Q 000384 192 EFYHKSDNKPKVFGMTASPVVRKGVSS-----------AMDCEGQISELESTLDSQ-VFTIEDK-------TEMEV---- 248 (1590)
Q Consensus 192 ~~~~~~~~~priLgLTATP~~~~~~~~-----------~~~~~~~i~~Le~~l~~~-i~~~~~~-------~~l~~---- 248 (1590)
.-....+..+.++|||+...-... ..-....+..+|..+... .|...+. ..+..
T Consensus 200 ---sg~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~ 276 (745)
T TIGR00963 200 ---SGPAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELF 276 (745)
T ss_pred ---cCCCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHH
Confidence 001112334555666554321000 000122234445444211 1111000 00000
Q ss_pred -----cc-cCcceeeEec-cCCCC----cccchhhhHHHhhhhhhhhHHHHHhhhhhhhccchhhHHHHHH-HHHHHHHH
Q 000384 249 -----FV-PSAKESCRFY-DQSKF----CGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRK-QLSDYHAK 316 (1590)
Q Consensus 249 -----~~-~~p~~~~~~y-~~~~~----~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~l~~~~~~ 316 (1590)
|+ ..-+..++.. ..... .+.++.+.++.- ..+. +...-.++.. .+.+.++.
T Consensus 277 ~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaK-E~v~----------------i~~e~~t~a~It~qn~Fr~ 339 (745)
T TIGR00963 277 EKDVDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAK-EGVE----------------IQNENQTLATITYQNFFRL 339 (745)
T ss_pred hcCCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHHh-cCCC----------------cCCCceeeeeeeHHHHHhh
Confidence 00 0000111110 00000 111122222110 0000 0000000000 00000000
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhHhHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcCcchhhhccccCCccccccCCCCC
Q 000384 317 ILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYIS 396 (1590)
Q Consensus 317 ~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s 396 (1590)
.... .|..+... .....+.++...---..|..... ...+ ....-.....
T Consensus 340 Y~kl---~GmTGTa~------------------------te~~E~~~iY~l~vv~IPtnkp~---~R~d-~~d~i~~t~~ 388 (745)
T TIGR00963 340 YEKL---SGMTGTAK------------------------TEEEEFEKIYNLEVVVVPTNRPV---IRKD-LSDLVYKTEE 388 (745)
T ss_pred Cchh---hccCCCcH------------------------HHHHHHHHHhCCCEEEeCCCCCe---eeee-CCCeEEcCHH
Confidence 0000 01100000 00000001110000000000000 0000 0000111224
Q ss_pred HHHHHHHHHHHhcCCCCCcEEEEEEehHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCce
Q 000384 397 TKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVN 476 (1590)
Q Consensus 397 ~K~~~L~~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~~ 476 (1590)
.|...+++.+.+.. ..+..+||||+++..++.|.+.|.+ .++....++|. +.+|+..+.+|+.+..+
T Consensus 389 ~k~~ai~~~i~~~~-~~grpvLV~t~si~~se~ls~~L~~----~gi~~~~Lna~--------q~~rEa~ii~~ag~~g~ 455 (745)
T TIGR00963 389 EKWKAVVDEIKERH-AKGQPVLVGTTSVEKSELLSNLLKE----RGIPHNVLNAK--------NHEREAEIIAQAGRKGA 455 (745)
T ss_pred HHHHHHHHHHHHHH-hcCCCEEEEeCcHHHHHHHHHHHHH----cCCCeEEeeCC--------hHHHHHHHHHhcCCCce
Confidence 67878877665443 4567899999999999999999998 57888889885 56889999999999999
Q ss_pred EEEEcccccccccCCC-------ccEEEEccCCCCHHHHHHHhccccccCce--EEEEeccchHHhhhhh
Q 000384 477 LLFATDVIEEGMHVPN-------CSYVIRFDLPKTVSSYIQSRGRARQHNSQ--FILMLERSERSVTDTA 537 (1590)
Q Consensus 477 vLVaT~vleeGIDip~-------~~~VI~fD~p~s~~~yiQr~GRA~R~gs~--~ivlv~~~E~~~~~~~ 537 (1590)
|+|||+++++|+||+. ..+||+++.|.|.+.|.|++||+||.|.. ...++..++..|+.+.
T Consensus 456 VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ls~eD~l~~~~~ 525 (745)
T TIGR00963 456 VTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDNLMRIFG 525 (745)
T ss_pred EEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEEEeccHHHHHhhh
Confidence 9999999999999998 56999999999999999999999999964 5666666667776543
|
The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus. |
| >PRK12898 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.3e-22 Score=244.80 Aligned_cols=129 Identities=11% Similarity=0.144 Sum_probs=105.2
Q ss_pred CHHHHHHHHHHHhcCCCCCcEEEEEEehHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCc
Q 000384 396 STKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKV 475 (1590)
Q Consensus 396 s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~ 475 (1590)
..|...|.+.+.... ..+..+||||+++..++.|.+.|.. .++.+..+||. +. +++..+..|+.+..
T Consensus 456 ~~K~~aL~~~i~~~~-~~~~pvLIft~t~~~se~L~~~L~~----~gi~~~~Lhg~------~~--~rE~~ii~~ag~~g 522 (656)
T PRK12898 456 AAKWAAVAARVRELH-AQGRPVLVGTRSVAASERLSALLRE----AGLPHQVLNAK------QD--AEEAAIVARAGQRG 522 (656)
T ss_pred HHHHHHHHHHHHHHH-hcCCCEEEEeCcHHHHHHHHHHHHH----CCCCEEEeeCC------cH--HHHHHHHHHcCCCC
Confidence 568889998887653 2335699999999999999999998 58899999997 44 44555666766667
Q ss_pred eEEEEcccccccccCC---Ccc-----EEEEccCCCCHHHHHHHhccccccCce--EEEEeccchHHhhhhh
Q 000384 476 NLLFATDVIEEGMHVP---NCS-----YVIRFDLPKTVSSYIQSRGRARQHNSQ--FILMLERSERSVTDTA 537 (1590)
Q Consensus 476 ~vLVaT~vleeGIDip---~~~-----~VI~fD~p~s~~~yiQr~GRA~R~gs~--~ivlv~~~E~~~~~~~ 537 (1590)
.|+|||+++++|+||+ ++. +||+||.|.|.+.|+||+||+||.|.. .+.++..++..|+.+.
T Consensus 523 ~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~~~is~eD~l~~~~~ 594 (656)
T PRK12898 523 RITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYEAILSLEDDLLQSFL 594 (656)
T ss_pred cEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEEEEechhHHHHHhhh
Confidence 8999999999999999 665 999999999999999999999999964 5566665666776544
|
|
| >KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3e-22 Score=244.96 Aligned_cols=324 Identities=18% Similarity=0.246 Sum_probs=207.8
Q ss_pred CCCcHHHHHHHHHHhc--CCEEEEeCCCChHHHHHHHHHHHHHHHHH----hCCCCeEEEEEecChhhHHHHHHHHHhhc
Q 000384 44 FIPRIYQLKVFEVAKR--RNTIAVLETGAGKTMIAVMLIKDIAQAIK----SNGFKKLIIFLAPTVHLVHQQYDVIRVHT 117 (1590)
Q Consensus 44 ~~pR~yQ~e~le~~~~--~n~Ii~~~TGsGKTliailli~~~l~~~~----~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~ 117 (1590)
-.+...|.++|+.+-+ .|.||++|||+|||.+|.+.|.+.+.+.. .....-++++|+|+++||....+.+.+.+
T Consensus 109 ~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl 188 (1230)
T KOG0952|consen 109 EEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKL 188 (1230)
T ss_pred HHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhc
Confidence 3467899999999974 89999999999999999998888776421 12345679999999999999888887753
Q ss_pred ---CCceEEEecCCCCCccchHHHHHhcCCCcEEEEcHHHHHHHHHhc--C-cCccceeEEEEeccccccCCC-c-HHHH
Q 000384 118 ---DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA--F-LSLDIVCFIVIDECHHATGNH-P-YTKI 189 (1590)
Q Consensus 118 ---~~~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~~--~-~~l~~i~lII~DEaH~~~~~~-~-~~~i 189 (1590)
|+.|..++|++... ......++|+|+||+.+.-.-+.+ . ...+.+.|||+||+|.+.+.- | ...|
T Consensus 189 ~~~gi~v~ELTGD~ql~-------~tei~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~RGpvlEti 261 (1230)
T KOG0952|consen 189 APLGISVRELTGDTQLT-------KTEIADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDDRGPVLETI 261 (1230)
T ss_pred ccccceEEEecCcchhh-------HHHHHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCcccchHHHH
Confidence 79999999987543 233568999999999984332221 1 224778999999999997552 2 2223
Q ss_pred HHHHH---hcCCCCCcEEEEeccCCccCCCCChhcHHHHHHHHHhhcCCeeEeecchhhhhhcccCc-ceeeEec----c
Q 000384 190 MKEFY---HKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSA-KESCRFY----D 261 (1590)
Q Consensus 190 m~~~~---~~~~~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~~~~~~~~l~~~~~~p-~~~~~~y----~ 261 (1590)
..+.. ......-||+|||||.-+ +.++- .++..+ ..-+.+| +
T Consensus 262 VaRtlr~vessqs~IRivgLSATlPN-------------~eDvA-----------------~fL~vn~~~glfsFd~~yR 311 (1230)
T KOG0952|consen 262 VARTLRLVESSQSMIRIVGLSATLPN-------------YEDVA-----------------RFLRVNPYAGLFSFDQRYR 311 (1230)
T ss_pred HHHHHHHHHhhhhheEEEEeeccCCC-------------HHHHH-----------------HHhcCCCccceeeeccccc
Confidence 32222 223456899999999532 12222 222222 1111111 1
Q ss_pred CCCCcccchhhhHHHhhhhhhhhHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhH
Q 000384 262 QSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVL 341 (1590)
Q Consensus 262 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~ 341 (1590)
|.+. .+.+. -...+-.....
T Consensus 312 PvpL-----~~~~i----------------------G~k~~~~~~~~--------------------------------- 331 (1230)
T KOG0952|consen 312 PVPL-----TQGFI----------------------GIKGKKNRQQK--------------------------------- 331 (1230)
T ss_pred ccce-----eeeEE----------------------eeecccchhhh---------------------------------
Confidence 1111 00000 00000000000
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcCcchhhhccccCCccccccCCCCCHHHHHHHHHHHhcCCCCCcEEEEEE
Q 000384 342 KAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFV 421 (1590)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv 421 (1590)
..+ -..+..+..+.+ ..+.+++|||
T Consensus 332 ------------------------~~~--------------------------d~~~~~kv~e~~-----~~g~qVlvFv 356 (1230)
T KOG0952|consen 332 ------------------------KNI--------------------------DEVCYDKVVEFL-----QEGHQVLVFV 356 (1230)
T ss_pred ------------------------hhH--------------------------HHHHHHHHHHHH-----HcCCeEEEEE
Confidence 000 011222233333 2367899999
Q ss_pred ehHHHHHHHHHHHhhCCCCCCeeEEEEEc-------------CCCCCCCCCHHHHHHHHHHhcCCCceEEEEcccccccc
Q 000384 422 ERIIAAKVVERFVKKVPFLTHLTVAYLTG-------------STTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGM 488 (1590)
Q Consensus 422 ~~r~ta~~L~~~L~~~~~~~~~~~~~l~G-------------~~~~~~~~~~~~r~~vl~~Fr~g~~~vLVaT~vleeGI 488 (1590)
.+|..+...++.|.......+....++++ -+.++.+|...+|.-+..-|..|.+++|+||+.+..|+
T Consensus 357 hsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~cTaTLAwGV 436 (1230)
T KOG0952|consen 357 HSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCCTATLAWGV 436 (1230)
T ss_pred ecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEEEecceeeecc
Confidence 99987777777665532223333333333 23345679999999999999999999999999999999
Q ss_pred cCCCccEEE----EccCCC------CHHHHHHHhccccccC
Q 000384 489 HVPNCSYVI----RFDLPK------TVSSYIQSRGRARQHN 519 (1590)
Q Consensus 489 Dip~~~~VI----~fD~p~------s~~~yiQr~GRA~R~g 519 (1590)
|+|+--++| .||... +.-+-+|..|||||.+
T Consensus 437 NLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPq 477 (1230)
T KOG0952|consen 437 NLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQ 477 (1230)
T ss_pred CCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCC
Confidence 999755555 255443 4556789999999965
|
|
| >PRK11131 ATP-dependent RNA helicase HrpA; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-21 Score=255.00 Aligned_cols=320 Identities=20% Similarity=0.217 Sum_probs=195.9
Q ss_pred CCCCCCCCcHHHHHHHHHHhc-CCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecC----hhhHHHHHHHH
Q 000384 39 TNSINFIPRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPT----VHLVHQQYDVI 113 (1590)
Q Consensus 39 ~~~~~~~pR~yQ~e~le~~~~-~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt----~~Lv~Qq~~~i 113 (1590)
..+..+.-..+-.++++.+.+ +.+||+++||||||...-.++.+. ..+..+.+++..|. ++|+.|.++++
T Consensus 68 ~~~~~LPi~~~r~~Il~ai~~~~VviI~GeTGSGKTTqlPq~lle~-----g~g~~g~I~~TQPRRlAArsLA~RVA~El 142 (1294)
T PRK11131 68 TYPENLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICLEL-----GRGVKGLIGHTQPRRLAARTVANRIAEEL 142 (1294)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHc-----CCCCCCceeeCCCcHHHHHHHHHHHHHHH
Confidence 334455557777788888875 456788999999999532222222 12223345666675 57777777777
Q ss_pred HhhcCCceEEEecCCCCCccchHHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEecccc-ccCCCcHHHHHHH
Q 000384 114 RVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHH-ATGNHPYTKIMKE 192 (1590)
Q Consensus 114 ~~~~~~~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~-~~~~~~~~~im~~ 192 (1590)
...+|-.|+.-. ..+ ...-.+.+|+|||+++|++.+..... +.++++||+||||. .....-....++.
T Consensus 143 ~~~lG~~VGY~v---rf~-------~~~s~~t~I~v~TpG~LL~~l~~d~~-Ls~~~~IIIDEAHERsLn~DfLLg~Lk~ 211 (1294)
T PRK11131 143 ETELGGCVGYKV---RFN-------DQVSDNTMVKLMTDGILLAEIQQDRL-LMQYDTIIIDEAHERSLNIDFILGYLKE 211 (1294)
T ss_pred hhhhcceeceee---cCc-------cccCCCCCEEEEChHHHHHHHhcCCc-cccCcEEEecCccccccccchHHHHHHH
Confidence 765554443211 111 11124789999999999999886644 89999999999995 4432222223443
Q ss_pred HHhcCCCCCcEEEEeccCCccCCCCChhcHHHHHHHHHhhc-CCeeEeecchhhhhhcccCcceeeEeccCCCCcccchh
Q 000384 193 FYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTL-DSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLK 271 (1590)
Q Consensus 193 ~~~~~~~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l-~~~i~~~~~~~~l~~~~~~p~~~~~~y~~~~~~~~~l~ 271 (1590)
... ..+..++++||||... ..+...+ ++.+..+..+. .|. ...|.+...
T Consensus 212 lL~-~rpdlKvILmSATid~--------------e~fs~~F~~apvI~V~Gr~-------~pV--ei~y~p~~~------ 261 (1294)
T PRK11131 212 LLP-RRPDLKVIITSATIDP--------------ERFSRHFNNAPIIEVSGRT-------YPV--EVRYRPIVE------ 261 (1294)
T ss_pred hhh-cCCCceEEEeeCCCCH--------------HHHHHHcCCCCEEEEcCcc-------ccc--eEEEeeccc------
Confidence 322 2245789999999631 1222222 12222221110 010 011111000
Q ss_pred hhHHHhhhhhhhhHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHhHHHHHHHHh
Q 000384 272 GKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYR 351 (1590)
Q Consensus 272 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~ 351 (1590)
... .
T Consensus 262 ----------------------------~~~--~---------------------------------------------- 265 (1294)
T PRK11131 262 ----------------------------EAD--D---------------------------------------------- 265 (1294)
T ss_pred ----------------------------ccc--h----------------------------------------------
Confidence 000 0
Q ss_pred hhhHHHHHHHHHHHHHHhhhcCcchhhhccccCCccccccCCCCCHHHHHHHHHHHhcCCCCCcEEEEEEehHHHHHHHH
Q 000384 352 QSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVE 431 (1590)
Q Consensus 352 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~ta~~L~ 431 (1590)
.. ..++..+++.+..........+|||++++..++.++
T Consensus 266 ----~~--------------------------------------~d~l~~ll~~V~~l~~~~~GdILVFLpg~~EIe~la 303 (1294)
T PRK11131 266 ----TE--------------------------------------RDQLQAIFDAVDELGREGPGDILIFMSGEREIRDTA 303 (1294)
T ss_pred ----hh--------------------------------------HHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHH
Confidence 00 000111111111111123457999999999999999
Q ss_pred HHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCceEEEEcccccccccCCCccEEEEcc-----------
Q 000384 432 RFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFD----------- 500 (1590)
Q Consensus 432 ~~L~~~~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fD----------- 500 (1590)
+.|.... +....+..+||. |+..+|..+++. .|..+|||||+++|.|||||++++||+++
T Consensus 304 e~L~~~~-~~~~~VlpLhg~------Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~ 374 (1294)
T PRK11131 304 DALNKLN-LRHTEILPLYAR------LSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRT 374 (1294)
T ss_pred HHHHhcC-CCcceEeecccC------CCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCcccccccccc
Confidence 9998742 234567788998 899999999986 57899999999999999999999999986
Q ss_pred ----CC---CCHHHHHHHhccccccCceEEEEeccchH
Q 000384 501 ----LP---KTVSSYIQSRGRARQHNSQFILMLERSER 531 (1590)
Q Consensus 501 ----~p---~s~~~yiQr~GRA~R~gs~~ivlv~~~E~ 531 (1590)
+| -|..+|.||+|||||.+.+.++-+...+.
T Consensus 375 ~~~~Lp~~~iSkasa~QRaGRAGR~~~G~c~rLyte~d 412 (1294)
T PRK11131 375 KVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEDD 412 (1294)
T ss_pred CcccCCeeecCHhhHhhhccccCCCCCcEEEEeCCHHH
Confidence 23 35578999999999988776666555433
|
|
| >KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-22 Score=209.86 Aligned_cols=161 Identities=19% Similarity=0.235 Sum_probs=133.4
Q ss_pred CCCCcHHHHHHHHHH-hcCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhhc----
Q 000384 43 NFIPRIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT---- 117 (1590)
Q Consensus 43 ~~~pR~yQ~e~le~~-~~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~---- 117 (1590)
.-.|.+.|.+.++.+ ++.+++..+..|.|||.++++.-.+-++ ...+.-.++++|.|++|+.|..++..++.
T Consensus 62 fehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqie---pv~g~vsvlvmchtrelafqi~~ey~rfskymP 138 (387)
T KOG0329|consen 62 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIE---PVDGQVSVLVMCHTRELAFQISKEYERFSKYMP 138 (387)
T ss_pred CCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcC---CCCCeEEEEEEeccHHHHHHHHHHHHHHHhhCC
Confidence 346889999999876 5899999999999999998886544443 44456679999999999999988877753
Q ss_pred CCceEEEecCCCCCccchHHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCCCcHHHHHHHHHhcC
Q 000384 118 DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS 197 (1590)
Q Consensus 118 ~~~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~~~~~~im~~~~~~~ 197 (1590)
++++.+++|+..+.. +.+.. -+.++|+|+||+.++.+.+...++++++...|+|||+.+..+-..++-+++.+...
T Consensus 139 ~vkvaVFfGG~~Ikk-dee~l---k~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle~lDMrRDvQEifr~t 214 (387)
T KOG0329|consen 139 SVKVSVFFGGLFIKK-DEELL---KNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRMT 214 (387)
T ss_pred CceEEEEEcceeccc-cHHHH---hCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHHHHHHHHHHHHHhhcC
Confidence 689999999988654 22222 23789999999999999999999999999999999999988777888888888777
Q ss_pred CCCCcEEEEeccC
Q 000384 198 DNKPKVFGMTASP 210 (1590)
Q Consensus 198 ~~~priLgLTATP 210 (1590)
+...++..+|||.
T Consensus 215 p~~KQvmmfsatl 227 (387)
T KOG0329|consen 215 PHEKQVMMFSATL 227 (387)
T ss_pred cccceeeeeeeec
Confidence 7778888889985
|
|
| >TIGR01054 rgy reverse gyrase | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.1e-21 Score=257.92 Aligned_cols=133 Identities=19% Similarity=0.158 Sum_probs=98.6
Q ss_pred CCCCCCcHHHHHHHHHHh-cCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhhc--
Q 000384 41 SINFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT-- 117 (1590)
Q Consensus 41 ~~~~~pR~yQ~e~le~~~-~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~-- 117 (1590)
...+.|+++|.++++.++ ++++++.+|||+|||..++.++..+.. .+.+++||+||++|+.|+++.++.+.
T Consensus 74 ~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~f~l~~~~~l~~------~g~~vLIL~PTreLa~Qi~~~l~~l~~~ 147 (1171)
T TIGR01054 74 AVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTTFGLAMSLFLAK------KGKRCYIILPTTLLVIQVAEKISSLAEK 147 (1171)
T ss_pred hcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHHHh------cCCeEEEEeCHHHHHHHHHHHHHHHHHh
Confidence 356789999999999887 689999999999999855443333322 24579999999999999999999865
Q ss_pred -CCce---EEEecCCCCCccchHHHHHhcC-CCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCC
Q 000384 118 -DFEV---EEYYGAKGVDEWDSQCWQKEIN-KNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGN 183 (1590)
Q Consensus 118 -~~~v---~~~~G~~~~d~~~~~~w~~~~~-~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~ 183 (1590)
++.+ +.++|+.+... ....|..... +++|+|+||+.|.+.+... .. +++++|+||||++.++
T Consensus 148 ~~i~~~~i~~~~Gg~~~~e-~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l--~~-~~~~iVvDEaD~~L~~ 214 (1171)
T TIGR01054 148 AGVGTVNIGAYHSRLPTKE-KKEFMERIENGDFDILITTTMFLSKNYDEL--GP-KFDFIFVDDVDALLKA 214 (1171)
T ss_pred cCCceeeeeeecCCCCHHH-HHHHHHHHhcCCCCEEEECHHHHHHHHHHh--cC-CCCEEEEeChHhhhhc
Confidence 4443 34678765432 1223433333 5899999999998877642 22 8999999999999863
|
Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA. |
| >KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.4e-22 Score=255.88 Aligned_cols=316 Identities=19% Similarity=0.244 Sum_probs=219.1
Q ss_pred CCCCcHHHHHHHHHHh-cCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhhcCCce
Q 000384 43 NFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEV 121 (1590)
Q Consensus 43 ~~~pR~yQ~e~le~~~-~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~~~~v 121 (1590)
.-..|+-|.|++..++ ++++.|.||||.||.+++.+++.-. .+..|+|.|.++|+..|...+ ...++..
T Consensus 262 ~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~---------~gitvVISPL~SLm~DQv~~L-~~~~I~a 331 (941)
T KOG0351|consen 262 HKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL---------GGVTVVISPLISLMQDQVTHL-SKKGIPA 331 (941)
T ss_pred cccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc---------CCceEEeccHHHHHHHHHHhh-hhcCcce
Confidence 3457999999999877 6999999999999999998875421 237899999999999999888 4568888
Q ss_pred EEEecCCCCCccchHHHHHhcC---CCcEEEEcHHHHHHH--HHhcCcCccc---eeEEEEeccccccCC-CcHHHHHHH
Q 000384 122 EEYYGAKGVDEWDSQCWQKEIN---KNDVLVMTPQILLDA--LRKAFLSLDI---VCFIVIDECHHATGN-HPYTKIMKE 192 (1590)
Q Consensus 122 ~~~~G~~~~d~~~~~~w~~~~~---~~~VlV~T~q~L~~~--l~~~~~~l~~---i~lII~DEaH~~~~~-~~~~~im~~ 192 (1590)
..+.++..... ....|+.+.. ..+|+..||+.+... +.+....+.. +.++|+||||....| |.|+.-.+.
T Consensus 332 ~~L~s~q~~~~-~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~ 410 (941)
T KOG0351|consen 332 CFLSSIQTAAE-RLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRPSYKR 410 (941)
T ss_pred eeccccccHHH-HHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccHHHHH
Confidence 88888776543 2344555443 479999999998542 2222333444 899999999999987 766655444
Q ss_pred HHhc--CCCCCcEEEEeccCCccCCCCChhcHHHHHHHHHhhcCCeeEeecchhhhhhcccCcceeeEeccCCCCcccch
Q 000384 193 FYHK--SDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDL 270 (1590)
Q Consensus 193 ~~~~--~~~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~~~~~~~~l~~~~~~p~~~~~~y~~~~~~~~~l 270 (1590)
.-.. ..+.-.+++||||-... .-.++-+.|+-. +-.. +...+.....+|....
T Consensus 411 l~~l~~~~~~vP~iALTATAT~~-----------v~~DIi~~L~l~-----~~~~---~~~sfnR~NL~yeV~~------ 465 (941)
T KOG0351|consen 411 LGLLRIRFPGVPFIALTATATER-----------VREDVIRSLGLR-----NPEL---FKSSFNRPNLKYEVSP------ 465 (941)
T ss_pred HHHHHhhCCCCCeEEeehhccHH-----------HHHHHHHHhCCC-----Ccce---ecccCCCCCceEEEEe------
Confidence 3221 22335789999995321 011111222100 0000 0000000000110000
Q ss_pred hhhHHHhhhhhhhhHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHhHHHHHHHH
Q 000384 271 KGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIY 350 (1590)
Q Consensus 271 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~ 350 (1590)
T Consensus 466 -------------------------------------------------------------------------------- 465 (941)
T KOG0351|consen 466 -------------------------------------------------------------------------------- 465 (941)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhHHHHHHHHHHHHHHhhhcCcchhhhccccCCccccccCCCCCHHHHHHHHHHHhcCCCCCcEEEEEEehHHHHHHH
Q 000384 351 RQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVV 430 (1590)
Q Consensus 351 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~ta~~L 430 (1590)
.........+...+..+ ..+..+||+|.+|.+++.+
T Consensus 466 ------------------------------------------k~~~~~~~~~~~~~~~~--~~~~s~IIYC~sr~~ce~v 501 (941)
T KOG0351|consen 466 ------------------------------------------KTDKDALLDILEESKLR--HPDQSGIIYCLSRKECEQV 501 (941)
T ss_pred ------------------------------------------ccCccchHHHHHHhhhc--CCCCCeEEEeCCcchHHHH
Confidence 00000011111122222 2356799999999999999
Q ss_pred HHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCceEEEEcccccccccCCCccEEEEccCCCCHHHHHH
Q 000384 431 ERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQ 510 (1590)
Q Consensus 431 ~~~L~~~~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fD~p~s~~~yiQ 510 (1590)
+..|.+ .++.+.++|++ |+.++|..|..+|-.++++|+|||=+.+.|||.|++..||||.+|.++..|.|
T Consensus 502 s~~L~~----~~~~a~~YHAG------l~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQ 571 (941)
T KOG0351|consen 502 SAVLRS----LGKSAAFYHAG------LPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQ 571 (941)
T ss_pred HHHHHH----hchhhHhhhcC------CCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCCchhHHHHHH
Confidence 999998 46778888887 99999999999999999999999999999999999999999999999999999
Q ss_pred HhccccccCce-EEEEecc
Q 000384 511 SRGRARQHNSQ-FILMLER 528 (1590)
Q Consensus 511 r~GRA~R~gs~-~ivlv~~ 528 (1590)
-.|||||.|.. +++|...
T Consensus 572 E~GRAGRDG~~s~C~l~y~ 590 (941)
T KOG0351|consen 572 EAGRAGRDGLPSSCVLLYG 590 (941)
T ss_pred hccccCcCCCcceeEEecc
Confidence 99999999964 5555544
|
|
| >COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.3e-21 Score=235.07 Aligned_cols=343 Identities=17% Similarity=0.229 Sum_probs=211.6
Q ss_pred CCCCCcHHHHHHHHHHhc------CCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHh
Q 000384 42 INFIPRIYQLKVFEVAKR------RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRV 115 (1590)
Q Consensus 42 ~~~~pR~yQ~e~le~~~~------~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~ 115 (1590)
..+.+|.||..++.++.+ +.++++|+||+|||.+|+.+|..+++ .+..++||||+.+++|+.|.+..+..
T Consensus 162 s~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r----~~~~KRVLFLaDR~~Lv~QA~~af~~ 237 (875)
T COG4096 162 SAIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIK----SGWVKRVLFLADRNALVDQAYGAFED 237 (875)
T ss_pred ccccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHh----cchhheeeEEechHHHHHHHHHHHHH
Confidence 568899999999987742 55999999999999999999998877 56678899999999999999999999
Q ss_pred hcCC--ceEEEecCCCCCccchHHHHHhcCCCcEEEEcHHHHHHHHHhc-----CcCccceeEEEEeccccccCCCcHHH
Q 000384 116 HTDF--EVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA-----FLSLDIVCFIVIDECHHATGNHPYTK 188 (1590)
Q Consensus 116 ~~~~--~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~~-----~~~l~~i~lII~DEaH~~~~~~~~~~ 188 (1590)
+.+. .+..+.+.. .+ ..++|.|+|+|.+...+.+. .+....++|||+||||+-.-+ .|..
T Consensus 238 ~~P~~~~~n~i~~~~-~~-----------~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi~~-~~~~ 304 (875)
T COG4096 238 FLPFGTKMNKIEDKK-GD-----------TSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGIYS-EWSS 304 (875)
T ss_pred hCCCccceeeeeccc-CC-----------cceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhHHh-hhHH
Confidence 8753 333333322 11 15799999999998887654 344566999999999997533 5667
Q ss_pred HHHHHHhcCCCCCcEEEEeccCCccCCCCChhcHHHHHHHHHhhc-CCeeEeecchhhhhhcccCc-ceeeEe--ccCCC
Q 000384 189 IMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTL-DSQVFTIEDKTEMEVFVPSA-KESCRF--YDQSK 264 (1590)
Q Consensus 189 im~~~~~~~~~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l-~~~i~~~~~~~~l~~~~~~p-~~~~~~--y~~~~ 264 (1590)
|+..| .....||||||-...+..+. ..+ +-.++..+..+.+...+-.| ....+. .....
T Consensus 305 I~dYF------dA~~~gLTATP~~~~d~~T~-----------~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G 367 (875)
T COG4096 305 ILDYF------DAATQGLTATPKETIDRSTY-----------GFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDG 367 (875)
T ss_pred HHHHH------HHHHHhhccCcccccccccc-----------cccCCCcceeecHHHHhhccccCCCCceEEeeeccccC
Confidence 87766 34567889999864322111 112 22333333333333222222 111110 00000
Q ss_pred CcccchhhhHHHhhhhhhhhHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHhHH
Q 000384 265 FCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQ 344 (1590)
Q Consensus 265 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~ 344 (1590)
.......+.....+.. + |-
T Consensus 368 ~~~~~~serek~~g~~-----------------------------i----------------~~---------------- 386 (875)
T COG4096 368 WKPDAGSEREKLQGEA-----------------------------I----------------DE---------------- 386 (875)
T ss_pred cCcCccchhhhhhccc-----------------------------c----------------Cc----------------
Confidence 0000000000000000 0 00
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHhhhcCcchhhhccccCCccccccCCCCCHHH-HHHHHHHHhcC-CCCCcEEEEEEe
Q 000384 345 EECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKL-HELLQLFLSFG-KSTQVLCIIFVE 422 (1590)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~-~~L~~lL~~~~-~~~~~k~IIFv~ 422 (1590)
+..... ...+ .........+.-| ..+.+.|..-. ...-.|+||||.
T Consensus 387 ------------------------dd~~~~------~~d~--dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~ 434 (875)
T COG4096 387 ------------------------DDQNFE------ARDF--DRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAK 434 (875)
T ss_pred ------------------------cccccc------cccc--chhccccchHHHHHHHHHHHhccccCCCccCceEEEee
Confidence 000000 0000 0000000011112 23333343311 112468999999
Q ss_pred hHHHHHHHHHHHhhC-CCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCC--CceEEEEcccccccccCCCccEEEEc
Q 000384 423 RIIAAKVVERFVKKV-PFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGG--KVNLLFATDVIEEGMHVPNCSYVIRF 499 (1590)
Q Consensus 423 ~r~ta~~L~~~L~~~-~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g--~~~vLVaT~vleeGIDip~~~~VI~f 499 (1590)
...+|+.+...|... |+..+--+..++|.. .+.| ..++.|... --+|.|+.+++..|||+|.|.++|.+
T Consensus 435 n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~-------~~~q-~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~ 506 (875)
T COG4096 435 NHDHAERIREALVNEYPEYNGRYAMKITGDA-------EQAQ-ALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFD 506 (875)
T ss_pred CcHHHHHHHHHHHHhCccccCceEEEEeccc-------hhhH-HHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeeh
Confidence 999999999988764 554555577788872 3333 445555443 36799999999999999999999999
Q ss_pred cCCCCHHHHHHHhccccccC
Q 000384 500 DLPKTVSSYIQSRGRARQHN 519 (1590)
Q Consensus 500 D~p~s~~~yiQr~GRA~R~g 519 (1590)
-.-.|..-|.|++||+-|..
T Consensus 507 r~VrSktkF~QMvGRGTRl~ 526 (875)
T COG4096 507 RKVRSKTKFKQMVGRGTRLC 526 (875)
T ss_pred hhhhhHHHHHHHhcCccccC
Confidence 99999999999999998843
|
|
| >TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.2e-21 Score=252.41 Aligned_cols=333 Identities=20% Similarity=0.172 Sum_probs=209.7
Q ss_pred CCCCCCcHHHHHHHHHHhc-CCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhhcCC
Q 000384 41 SINFIPRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDF 119 (1590)
Q Consensus 41 ~~~~~pR~yQ~e~le~~~~-~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~~~ 119 (1590)
+..+.-..+..++++.+.+ +.+||+++||||||...-.++.+. ..+....+++..|.+.-+...+..+...++.
T Consensus 63 ~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle~-----~~~~~~~I~~tQPRRlAA~svA~RvA~elg~ 137 (1283)
T TIGR01967 63 PDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTTQLPKICLEL-----GRGSHGLIGHTQPRRLAARTVAQRIAEELGT 137 (1283)
T ss_pred CCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHHHHHHHHHHc-----CCCCCceEecCCccHHHHHHHHHHHHHHhCC
Confidence 3344556666777777765 567899999999999654433332 1233446778889998888889999888888
Q ss_pred ceEEEecC-CCCCccchHHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEecccc-ccCCCcHHHHHHHHHhcC
Q 000384 120 EVEEYYGA-KGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHH-ATGNHPYTKIMKEFYHKS 197 (1590)
Q Consensus 120 ~v~~~~G~-~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~-~~~~~~~~~im~~~~~~~ 197 (1590)
.++...|- ...+. ..-.+..|.|+|+++|++.+.+.. .+.++++|||||||. ...-.-.-.+++.....
T Consensus 138 ~lG~~VGY~vR~~~-------~~s~~T~I~~~TdGiLLr~l~~d~-~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~- 208 (1283)
T TIGR01967 138 PLGEKVGYKVRFHD-------QVSSNTLVKLMTDGILLAETQQDR-FLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPR- 208 (1283)
T ss_pred CcceEEeeEEcCCc-------ccCCCceeeeccccHHHHHhhhCc-ccccCcEEEEcCcchhhccchhHHHHHHHHHhh-
Confidence 88777773 22111 112467999999999999987754 478999999999995 44322222234444322
Q ss_pred CCCCcEEEEeccCCccCCCCChhcHHHHHHHHHhhcC-CeeEeecchhhhhhcccCcceeeEeccCCCCcccchhhhHHH
Q 000384 198 DNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLD-SQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEV 276 (1590)
Q Consensus 198 ~~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~-~~i~~~~~~~~l~~~~~~p~~~~~~y~~~~~~~~~l~~~~~~ 276 (1590)
.+..++++||||... ..+...+. +.+..+..+. -|. ...|.+....
T Consensus 209 rpdLKlIlmSATld~--------------~~fa~~F~~apvI~V~Gr~-------~PV--ev~Y~~~~~~---------- 255 (1283)
T TIGR01967 209 RPDLKIIITSATIDP--------------ERFSRHFNNAPIIEVSGRT-------YPV--EVRYRPLVEE---------- 255 (1283)
T ss_pred CCCCeEEEEeCCcCH--------------HHHHHHhcCCCEEEECCCc-------ccc--eeEEeccccc----------
Confidence 245789999999631 12222222 2222111110 000 0111110000
Q ss_pred hhhhhhhhHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHhHHHHHHHHhhhhHH
Q 000384 277 SWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQ 356 (1590)
Q Consensus 277 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (1590)
....
T Consensus 256 ---------------------~~~~------------------------------------------------------- 259 (1283)
T TIGR01967 256 ---------------------QEDD------------------------------------------------------- 259 (1283)
T ss_pred ---------------------ccch-------------------------------------------------------
Confidence 0000
Q ss_pred HHHHHHHHHHHHhhhcCcchhhhccccCCccccccCCCCCHHHHHHHHHHHhcCCCCCcEEEEEEehHHHHHHHHHHHhh
Q 000384 357 CKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKK 436 (1590)
Q Consensus 357 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~ 436 (1590)
...+...+.+.+..........+|||++.+..++.+.+.|.+
T Consensus 260 --------------------------------------~~~~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l~~~L~~ 301 (1283)
T TIGR01967 260 --------------------------------------DLDQLEAILDAVDELFAEGPGDILIFLPGEREIRDAAEILRK 301 (1283)
T ss_pred --------------------------------------hhhHHHHHHHHHHHHHhhCCCCEEEeCCCHHHHHHHHHHHHh
Confidence 000001111111100001234799999999999999999986
Q ss_pred CCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCceEEEEcccccccccCCCccEEEEccCC--------------
Q 000384 437 VPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLP-------------- 502 (1590)
Q Consensus 437 ~~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fD~p-------------- 502 (1590)
.. ..++.+..+||. |+.++|.++++.+ +..+|||||+++|.|||||++++||+++.+
T Consensus 302 ~~-~~~~~VlpLhg~------Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L 372 (1283)
T TIGR01967 302 RN-LRHTEILPLYAR------LSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRL 372 (1283)
T ss_pred cC-CCCcEEEeccCC------CCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCcccc
Confidence 42 235678889998 8999999986654 247999999999999999999999998843
Q ss_pred ----CCHHHHHHHhccccccCceEEEEeccchHHhhhhhhcCChhh
Q 000384 503 ----KTVSSYIQSRGRARQHNSQFILMLERSERSVTDTALSRDPEA 544 (1590)
Q Consensus 503 ----~s~~~yiQr~GRA~R~gs~~ivlv~~~E~~~~~~~~~~~~~~ 544 (1590)
-|..+|.||+|||||.+.+.++-+...+.+. ....+..||.
T Consensus 373 ~~~~ISkasa~QRaGRAGR~~~G~cyRLyte~~~~-~~~~~~~PEI 417 (1283)
T TIGR01967 373 PIEPISQASANQRKGRCGRVAPGICIRLYSEEDFN-SRPEFTDPEI 417 (1283)
T ss_pred CCccCCHHHHHHHhhhhCCCCCceEEEecCHHHHH-hhhhccCccc
Confidence 2567999999999999988666665544332 2233444543
|
This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-21 Score=217.79 Aligned_cols=325 Identities=18% Similarity=0.251 Sum_probs=201.3
Q ss_pred cHHHHHHHHHHh--cCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhhcCCceEEE
Q 000384 47 RIYQLKVFEVAK--RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEY 124 (1590)
Q Consensus 47 R~yQ~e~le~~~--~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~~~~v~~~ 124 (1590)
.+-|..++..+. ++++.|+||||+||++++.++..- . +.+.+++.|..+|...|.+.+.+. .+++..+
T Consensus 22 s~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~--~-------~gITIV~SPLiALIkDQiDHL~~L-KVp~~SL 91 (641)
T KOG0352|consen 22 SRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALV--H-------GGITIVISPLIALIKDQIDHLKRL-KVPCESL 91 (641)
T ss_pred ChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHH--h-------CCeEEEehHHHHHHHHHHHHHHhc-CCchhHh
Confidence 468999999886 488999999999999999987542 1 337899999999999999888754 4555555
Q ss_pred ecCCCCCccchHH--HHHhcCCCcEEEEcHHHHH-----HHHHhcCcCccceeEEEEeccccccCC-CcHHHHHHHH--H
Q 000384 125 YGAKGVDEWDSQC--WQKEINKNDVLVMTPQILL-----DALRKAFLSLDIVCFIVIDECHHATGN-HPYTKIMKEF--Y 194 (1590)
Q Consensus 125 ~G~~~~d~~~~~~--w~~~~~~~~VlV~T~q~L~-----~~l~~~~~~l~~i~lII~DEaH~~~~~-~~~~~im~~~--~ 194 (1590)
.+.++..+.+.-. ....-.+..++..||++.. .+| ++..+-.-+.++|+||||....| |.|+--...+ +
T Consensus 92 NSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lL-n~L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~L 170 (641)
T KOG0352|consen 92 NSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLL-NGLANRDVLRYIVVDEAHCVSQWGHDFRPDYLTLGSL 170 (641)
T ss_pred cchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHH-HHHhhhceeeeEEechhhhHhhhccccCcchhhhhhH
Confidence 5544332211110 1122235689999998752 222 23344566889999999999877 6554332211 1
Q ss_pred hcCCCCCcEEEEeccCCccCCCCChhcHHHHHHHHHhhcCCeeEeecchhhhhhcccCcceeeEeccCCCCcccchhhhH
Q 000384 195 HKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKL 274 (1590)
Q Consensus 195 ~~~~~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~~~~~~~~l~~~~~~p~~~~~~y~~~~~~~~~l~~~~ 274 (1590)
...-+...-++||||-...- .+ ++-.-|+- +.-+..|.+.--....+|+
T Consensus 171 RS~~~~vpwvALTATA~~~V--------qE---Di~~qL~L-------~~PVAiFkTP~FR~NLFYD------------- 219 (641)
T KOG0352|consen 171 RSVCPGVPWVALTATANAKV--------QE---DIAFQLKL-------RNPVAIFKTPTFRDNLFYD------------- 219 (641)
T ss_pred HhhCCCCceEEeecccChhH--------HH---HHHHHHhh-------cCcHHhccCcchhhhhhHH-------------
Confidence 11123455689999854321 11 11111100 0000000000000000000
Q ss_pred HHhhhhhhhhHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHhHHHHHHHHhhhh
Q 000384 275 EVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSS 354 (1590)
Q Consensus 275 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (1590)
+ .+++. +...+..
T Consensus 220 ------------------------~---------~~K~~---I~D~~~~------------------------------- 232 (641)
T KOG0352|consen 220 ------------------------N---------HMKSF---ITDCLTV------------------------------- 232 (641)
T ss_pred ------------------------H---------HHHHH---hhhHhHh-------------------------------
Confidence 0 00000 0000000
Q ss_pred HHHHHHHHHHHHHHhhhcCcchhhhccccCCccccccCCCCCHHHHHHHHHHHhcCCCCCcEEEEEEehHHHHHHHHHHH
Q 000384 355 LQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFV 434 (1590)
Q Consensus 355 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L 434 (1590)
...|....+..- .|. .+....-..++||||.+|..++.++-.|
T Consensus 233 --LaDF~~~~LG~~----------------------------~~~-------~~~~K~~~GCGIVYCRTR~~cEq~AI~l 275 (641)
T KOG0352|consen 233 --LADFSSSNLGKH----------------------------EKA-------SQNKKTFTGCGIVYCRTRNECEQVAIML 275 (641)
T ss_pred --HHHHHHHhcCCh----------------------------hhh-------hcCCCCcCcceEEEeccHHHHHHHHHHh
Confidence 001110000000 000 0000112347899999999999999988
Q ss_pred hhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCceEEEEcccccccccCCCccEEEEccCCCCHHHHHHHhcc
Q 000384 435 KKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514 (1590)
Q Consensus 435 ~~~~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fD~p~s~~~yiQr~GR 514 (1590)
.. .|+.+..+|.+ +...+|.++.+++-+|++.|++||...+.|+|-|++..||++|.|.|+..|.|-.||
T Consensus 276 ~~----~Gi~A~AYHAG------LK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGR 345 (641)
T KOG0352|consen 276 EI----AGIPAMAYHAG------LKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGR 345 (641)
T ss_pred hh----cCcchHHHhcc------cccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEEecCchhhhHHHHHhccc
Confidence 77 67877777766 899999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCce-EEEEec
Q 000384 515 ARQHNSQ-FILMLE 527 (1590)
Q Consensus 515 A~R~gs~-~ivlv~ 527 (1590)
|||.|.. |+-+.+
T Consensus 346 AGRDGk~SyCRLYY 359 (641)
T KOG0352|consen 346 AGRDGKRSYCRLYY 359 (641)
T ss_pred cccCCCccceeeee
Confidence 9999975 444443
|
|
| >PRK09694 helicase Cas3; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2e-20 Score=241.21 Aligned_cols=339 Identities=18% Similarity=0.222 Sum_probs=196.8
Q ss_pred CCCCCcHHHHHHHHHHh-cCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhh----
Q 000384 42 INFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVH---- 116 (1590)
Q Consensus 42 ~~~~pR~yQ~e~le~~~-~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~---- 116 (1590)
..+.|||+|..+.+... ...+||.+|||+|||.+|++++..++. .+....++|..||.++++|.+++++.+
T Consensus 283 ~~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~----~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~ 358 (878)
T PRK09694 283 NGYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLID----QGLADSIIFALPTQATANAMLSRLEALASKL 358 (878)
T ss_pred CCCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHH----hCCCCeEEEECcHHHHHHHHHHHHHHHHHHh
Confidence 36789999998865433 366899999999999999988776654 334456999999999999999998753
Q ss_pred c-CCceEEEecCCCCCc------------------cc-hHHHHHhc----CCCcEEEEcHHHHHH-HHHhcCcCccce--
Q 000384 117 T-DFEVEEYYGAKGVDE------------------WD-SQCWQKEI----NKNDVLVMTPQILLD-ALRKAFLSLDIV-- 169 (1590)
Q Consensus 117 ~-~~~v~~~~G~~~~d~------------------~~-~~~w~~~~----~~~~VlV~T~q~L~~-~l~~~~~~l~~i-- 169 (1590)
+ ...+...+|....+. |. ...|.... --..|+|+|...++. .+......+..+
T Consensus 359 f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~L 438 (878)
T PRK09694 359 FPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGL 438 (878)
T ss_pred cCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhh
Confidence 2 356777787543210 00 01344321 137999999977654 333221122222
Q ss_pred --eEEEEeccccccCCCcHHHHHHHHHhc-CCCCCcEEEEeccCCccCCCCChhcHHHHHHHHHhhcCCeeEeecchhhh
Q 000384 170 --CFIVIDECHHATGNHPYTKIMKEFYHK-SDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEM 246 (1590)
Q Consensus 170 --~lII~DEaH~~~~~~~~~~im~~~~~~-~~~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~~~~~~~~l 246 (1590)
++|||||+|-+-. -+..++...+.. ......++.||||+-.. ....|-..+....
T Consensus 439 a~svvIiDEVHAyD~--ym~~lL~~~L~~l~~~g~~vIllSATLP~~-----------~r~~L~~a~~~~~--------- 496 (878)
T PRK09694 439 GRSVLIVDEVHAYDA--YMYGLLEAVLKAQAQAGGSVILLSATLPAT-----------LKQKLLDTYGGHD--------- 496 (878)
T ss_pred ccCeEEEechhhCCH--HHHHHHHHHHHHHHhcCCcEEEEeCCCCHH-----------HHHHHHHHhcccc---------
Confidence 4899999999832 223333333322 22346699999997421 1122222211100
Q ss_pred hhcccCcceeeEeccCCCCcccchhhhHHHhhhhhhhhHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 000384 247 EVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGL 326 (1590)
Q Consensus 247 ~~~~~~p~~~~~~y~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~ 326 (1590)
+......|...... .... ... +. +...
T Consensus 497 ------~~~~~~~YPlvt~~-----~~~~--~~~---------------~~-~~~~------------------------ 523 (878)
T PRK09694 497 ------PVELSSAYPLITWR-----GVNG--AQR---------------FD-LSAH------------------------ 523 (878)
T ss_pred ------cccccccccccccc-----cccc--cee---------------ee-cccc------------------------
Confidence 00000011000000 0000 000 00 0000
Q ss_pred hHHHHHHHHHHHHhHhHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcCcchhhhccccCCccccccCCCCCHHHHHHHHHH
Q 000384 327 ICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLF 406 (1590)
Q Consensus 327 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL 406 (1590)
...... ...+ ... ........+....+..++
T Consensus 524 ------------------------------------------~~~~~~-~~~v-~v~-----~~~~~~~~~~~~~l~~i~ 554 (878)
T PRK09694 524 ------------------------------------------PEQLPA-RFTI-QLE-----PICLADMLPDLTLLQRMI 554 (878)
T ss_pred ------------------------------------------ccccCc-ceEE-EEE-----eeccccccCHHHHHHHHH
Confidence 000000 0000 000 000000001111111222
Q ss_pred HhcCCCCCcEEEEEEehHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHH----HHHHHHh-cCCC---ceEE
Q 000384 407 LSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQ----KEVLESF-RGGK---VNLL 478 (1590)
Q Consensus 407 ~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~~~~~~r----~~vl~~F-r~g~---~~vL 478 (1590)
... ..+.+++||||++..|..+++.|+... .....+..+||. +...+| .++++.| ++|+ ..||
T Consensus 555 ~~~--~~g~~vLVf~NTV~~Aq~ly~~L~~~~-~~~~~v~llHsr------f~~~dR~~~E~~vl~~fgk~g~r~~~~IL 625 (878)
T PRK09694 555 AAA--NAGAQVCLICNLVDDAQKLYQRLKELN-NTQVDIDLFHAR------FTLNDRREKEQRVIENFGKNGKRNQGRIL 625 (878)
T ss_pred HHH--hcCCEEEEEECCHHHHHHHHHHHHhhC-CCCceEEEEeCC------CCHHHHHHHHHHHHHHHHhcCCcCCCeEE
Confidence 221 235689999999999999999998631 123678899998 787777 4678899 7776 4799
Q ss_pred EEcccccccccCCCccEEEEccCCCCHHHHHHHhccccccCc
Q 000384 479 FATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNS 520 (1590)
Q Consensus 479 VaT~vleeGIDip~~~~VI~fD~p~s~~~yiQr~GRA~R~gs 520 (1590)
|||+|+|.|||| ++++||....| ..+++||.||++|.+.
T Consensus 626 VaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 626 VATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred EECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 999999999999 58999998777 6799999999999864
|
|
| >TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.7e-20 Score=237.26 Aligned_cols=156 Identities=15% Similarity=0.207 Sum_probs=110.1
Q ss_pred CCCCCcHHHHHHHHHHhc-----------CCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHH
Q 000384 42 INFIPRIYQLKVFEVAKR-----------RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQY 110 (1590)
Q Consensus 42 ~~~~pR~yQ~e~le~~~~-----------~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~ 110 (1590)
...-+|.||.++++++.+ ++++|.++||||||++++.+++.++. .....+||||||+..|+.||.
T Consensus 235 ~k~~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~----~~~~~~vl~lvdR~~L~~Q~~ 310 (667)
T TIGR00348 235 TKPYQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALE----LLKNPKVFFVVDRRELDYQLM 310 (667)
T ss_pred eeeehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHh----hcCCCeEEEEECcHHHHHHHH
Confidence 346689999999988731 46999999999999999999888764 234567999999999999999
Q ss_pred HHHHhhcCCceEEEecCCCCCccchHHHHHhcC--CCcEEEEcHHHHHHHHHhcC--cCccce-eEEEEeccccccCCCc
Q 000384 111 DVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEIN--KNDVLVMTPQILLDALRKAF--LSLDIV-CFIVIDECHHATGNHP 185 (1590)
Q Consensus 111 ~~i~~~~~~~v~~~~G~~~~d~~~~~~w~~~~~--~~~VlV~T~q~L~~~l~~~~--~~l~~i-~lII~DEaH~~~~~~~ 185 (1590)
+.|.......+ .+.. +...+...+. ...|+|+|.|.|.+.+.... ...... .+||+|||||.... .
T Consensus 311 ~~f~~~~~~~~---~~~~-----s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~-~ 381 (667)
T TIGR00348 311 KEFQSLQKDCA---ERIE-----SIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYG-E 381 (667)
T ss_pred HHHHhhCCCCC---cccC-----CHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccch-H
Confidence 99998753111 1111 1122223222 46899999999986543321 112222 38999999998643 5
Q ss_pred HHHHHHHHHhcCCCCCcEEEEeccCCccC
Q 000384 186 YTKIMKEFYHKSDNKPKVFGMTASPVVRK 214 (1590)
Q Consensus 186 ~~~im~~~~~~~~~~priLgLTATP~~~~ 214 (1590)
|...|+.++ +...+|||||||....
T Consensus 382 ~~~~l~~~~----p~a~~lGfTaTP~~~~ 406 (667)
T TIGR00348 382 LAKNLKKAL----KNASFFGFTGTPIFKK 406 (667)
T ss_pred HHHHHHhhC----CCCcEEEEeCCCcccc
Confidence 666665432 4568999999998753
|
Members of this family are assumed to differ from each other in DNA site specificity. |
| >PF14622 Ribonucleas_3_3: Ribonuclease-III-like; PDB: 1O0W_A 2A11_A 3N3W_B | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.9e-22 Score=202.64 Aligned_cols=121 Identities=38% Similarity=0.436 Sum_probs=98.0
Q ss_pred hHHHHHhhcCCCCC--CCCCcchhhhhhhhhHhHHHHHHHHhhCCCCCcchhHHHHHHhhchHHHHHHHHhCCCcccccc
Q 000384 1045 SSLILEALTTLGCC--ESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRD 1122 (1590)
Q Consensus 1045 ~~lll~AlT~~s~~--~~~n~ErLE~LGDs~Lk~~~s~~l~~~~p~~~eg~ls~~r~~~v~N~~L~~~a~~~gl~~~i~~ 1122 (1590)
++++++||||+|+. ...||||||||||++|+++++.++|.++|. +||.++..|+.+|+|.+|+++|.++||+++|+.
T Consensus 2 ~~Ll~~alTH~S~~~~~~~~nerLefLGd~vL~~~vs~~l~~~~~~-~~g~l~~~~~~lv~~~~La~~a~~lgL~~~i~~ 80 (128)
T PF14622_consen 2 DELLLQALTHKSYAHERKPNNERLEFLGDAVLGLVVSEYLFQRPPA-DEGELTRLRSNLVSNETLAEIAKQLGLDKLIRW 80 (128)
T ss_dssp HHHHHHHTB-HHHHHHTCB-SHHHHHHHHHHHHHHHHHHHHHHTTT-SCHHHHHHHHHHHSHHHHHHHHHHTTCGGC-B-
T ss_pred HHHHHHHhcCccccccccCccHHHHHHHHHHHHHHHHHHHHhCcCc-cchHHHHHHHHHhChHHHHHHHHHCCHHHHHHh
Confidence 68999999999984 357999999999999999999999999555 899999999999999999999999999999997
Q ss_pred ccCCCCcccCCCccCCCCCCCCCCCCcccccCCCcccccccceecCCcCCCCccccccchhhhHHHHHHHHhhhccChhH
Q 000384 1123 SAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIA 1202 (1590)
Q Consensus 1123 ~~f~~~~w~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~iAD~vEAliGA~~~~~G~~~ 1202 (1590)
.+ +.. .......+|.+||+|||+|||+|+|+|.+.
T Consensus 81 ~~---------~~~------------------------------------~~~~~~~~~vlad~feAliGAiyld~G~~~ 115 (128)
T PF14622_consen 81 GP---------GEE------------------------------------KSGGSGSDKVLADVFEALIGAIYLDSGFEA 115 (128)
T ss_dssp -H---------HHH------------------------------------HTTGGG-HHHHHHHHHHHHHHHHHHH-HHH
T ss_pred Cc---------cHh------------------------------------hcCCCCCccHHHhHHHHHHHHHHHHcCHHH
Confidence 32 000 001124578999999999999999999999
Q ss_pred HHHHHHHhC
Q 000384 1203 ALYMMKWLG 1211 (1590)
Q Consensus 1203 a~~~~~~~~ 1211 (1590)
|.+|+....
T Consensus 116 a~~~i~~~i 124 (128)
T PF14622_consen 116 ARKFIQKLI 124 (128)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999886553
|
|
| >smart00535 RIBOc Ribonuclease III family | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.7e-21 Score=196.85 Aligned_cols=120 Identities=39% Similarity=0.473 Sum_probs=105.7
Q ss_pred HHHHHhhcCCCCCCCC-CcchhhhhhhhhHhHHHHHHHHhhCCCCCcchhHHHHHHhhchHHHHHHHHhCCCcccccccc
Q 000384 1046 SLILEALTTLGCCESF-SMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSA 1124 (1590)
Q Consensus 1046 ~lll~AlT~~s~~~~~-n~ErLE~LGDs~Lk~~~s~~l~~~~p~~~eg~ls~~r~~~v~N~~L~~~a~~~gl~~~i~~~~ 1124 (1590)
+++++||||+|+.... ||||||||||+||+++++.++|.++|+.++|.|+..|+.+|||++|+++|.++||++||+..+
T Consensus 1 ~ll~~alth~s~~~~~~~~e~Le~lGd~vl~~~v~~~l~~~~p~~~~~~l~~~~~~lvsn~~la~~a~~~~l~~~i~~~~ 80 (129)
T smart00535 1 SLLLRALTHASYSNEHEHNERLEFLGDAVLELVVTEYLYKKYPDLSEGDLSRLRSALVSNETLARLAKKLGLGEFIRLGR 80 (129)
T ss_pred CHHHHHhhcccccccCcchHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHCHHHHHHHHHHCCcHHHHccCc
Confidence 3789999999998776 999999999999999999999999999999999999999999999999999999999999764
Q ss_pred CCCCcccCCCccCCCCCCCCCCCCcccccCCCcccccccceecCCcCCCCccccccchhhhHHHHHHHHhhhccChhHHH
Q 000384 1125 FDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAAL 1204 (1590)
Q Consensus 1125 f~~~~w~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~iAD~vEAliGA~~~~~G~~~a~ 1204 (1590)
+... ......+|.+||+|||+|||+|+++|.+.|.
T Consensus 81 ~~~~---------------------------------------------~~~~~~~k~~a~~~eAliGAi~ld~g~~~~~ 115 (129)
T smart00535 81 GEAI---------------------------------------------SGGRDKPSILADVFEALIGAIYLDSGLEAAR 115 (129)
T ss_pred hHhh---------------------------------------------cCCcccchHHHHHHHHHHHHHHHhCCHHHHH
Confidence 2210 0001468999999999999999999999999
Q ss_pred HHHHHh
Q 000384 1205 YMMKWL 1210 (1590)
Q Consensus 1205 ~~~~~~ 1210 (1590)
+|+..+
T Consensus 116 ~~i~~~ 121 (129)
T smart00535 116 EFIRDL 121 (129)
T ss_pred HHHHHH
Confidence 987543
|
|
| >cd00593 RIBOc RIBOc | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.7e-21 Score=198.25 Aligned_cols=119 Identities=40% Similarity=0.554 Sum_probs=107.8
Q ss_pred HHHHhhcCCCCCCC---CCcchhhhhhhhhHhHHHHHHHHhhCCCCCcchhHHHHHHhhchHHHHHHHHhCCCccccccc
Q 000384 1047 LILEALTTLGCCES---FSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDS 1123 (1590)
Q Consensus 1047 lll~AlT~~s~~~~---~n~ErLE~LGDs~Lk~~~s~~l~~~~p~~~eg~ls~~r~~~v~N~~L~~~a~~~gl~~~i~~~ 1123 (1590)
++++||||+|+... .||||||||||++|+++++.++|..+|+.++|.|+.+|+.+|||++|+++|.++||++||+..
T Consensus 2 ll~~alth~s~~~~~~~~~~e~Le~lGdavl~~~~~~~l~~~~~~~~~~~l~~~~~~~v~n~~l~~~a~~~gl~~~i~~~ 81 (133)
T cd00593 2 LLLEALTHPSYANEHGRFNNERLEFLGDAVLELVVTEYLFKKFPDLSEGDLTRLRSALVSNETLARLARELGLGKYLRLG 81 (133)
T ss_pred HHHHhhcCccccccCCCcchHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHCHHHHHHHHHHcCcHHHhccC
Confidence 68999999999765 899999999999999999999999999999999999999999999999999999999999987
Q ss_pred cCCCCcccCCCccCCCCCCCCCCCCcccccCCCcccccccceecCCcCCCCccccccchhhhHHHHHHHHhhhccChhHH
Q 000384 1124 AFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAA 1203 (1590)
Q Consensus 1124 ~f~~~~w~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~iAD~vEAliGA~~~~~G~~~a 1203 (1590)
+.... ......+|.+||+|||||||+|+++|.+.|
T Consensus 82 ~~~~~---------------------------------------------~~~~~~~k~~ad~~eAliGAiyld~g~~~~ 116 (133)
T cd00593 82 KGEEK---------------------------------------------SGGRLRPKILADVFEALIGAIYLDGGFEAA 116 (133)
T ss_pred chHhh---------------------------------------------cCCcccccHHHHHHHHHHHHHHHhCCHHHH
Confidence 52211 012367899999999999999999999999
Q ss_pred HHHHHHh
Q 000384 1204 LYMMKWL 1210 (1590)
Q Consensus 1204 ~~~~~~~ 1210 (1590)
.+|+.++
T Consensus 117 ~~~i~~~ 123 (133)
T cd00593 117 RKFLLRL 123 (133)
T ss_pred HHHHHHH
Confidence 9999886
|
Ribonuclease III C terminal domain. This group consists of eukaryotic, bacterial and archeal ribonuclease III (RNAse III) proteins. RNAse III is a double stranded RNA-specific endonuclease. Prokaryotic RNAse III is important in post-transcriptional control of mRNA stability and translational efficiency. It is involved in the processing of ribosomal RNA precursors. Prokaryotic RNAse III also plays a role in the maturation of tRNA precursors and in the processing of phage and plasmid transcripts. Eukaryotic RNase III's participate (through direct cleavage) in rRNA processing, in processing of small nucleolar RNAs (snoRNAs) and snRNA's (components of the spliceosome). In eukaryotes RNase III or RNaseIII like enzymes such as Dicer are involved in RNAi (RNA interference) and miRNA (micro-RNA) gene silencing. |
| >PRK14718 ribonuclease III; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.2e-21 Score=221.03 Aligned_cols=201 Identities=18% Similarity=0.207 Sum_probs=133.0
Q ss_pred HHHHHHHhCCccCCHHHHHHHHccCCCCCCcchH----------------HHHHHhcccChHHHHHHHHHHHcCCCCCCC
Q 000384 1240 IKDIESKIGYEFTVKFLLQEAITHASVQEFYCYQ----------------NLYKHLQHCSTLLLSQITEYVKSFPKPGET 1303 (1590)
Q Consensus 1240 ~~~le~~lgy~F~~~~LL~~AlTH~S~~~~~~ye----------------~L~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 1303 (1590)
+..||++|||+|+|+.||.+||||+||.. .||| +||+.||..++|.++.++..+++-..
T Consensus 3 l~~LEkrLGY~Fkn~~LL~eALTH~Sys~-e~NERLEFLGDAVL~liVse~Lf~~fPdl~EGeLT~LRS~LVSnet---- 77 (467)
T PRK14718 3 LSQLESRLRYEFRNAELLRQALTHRSHSA-THNERLEFLGDSVLNCAVAALLFQRFGKLDEGDLSRVRANLVKQQS---- 77 (467)
T ss_pred HHHHHHHhCCCcCCHHHHHHHHhccCcCc-ccHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHhhhHH----
Confidence 56799999999999999999999999975 4788 88999999999999999999876111
Q ss_pred CCCCCCCCCCchhhhHHHHHHhceeecCCCChHHHHHHHHhhhccccCCCCCCCChhhHHHHHHHhcCCcceeeeeeeCc
Q 000384 1304 TDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELCDSLGYFVKENCTLKGE 1383 (1590)
Q Consensus 1304 ~~~~~~~~~~k~l~D~~Ea~iGAi~lDsg~~~~~~~~~~~~~l~~~i~~~~~~~~P~~~L~e~~~~~~~~~~~~~~~~g~ 1383 (1590)
|+ -|-.+-|+ .....+- ....... .....+.|.....
T Consensus 78 ------------LA--------~IAr~LGL--~d~Lrlg----~gE~~sg--G~~~~sILADvFE--------------- 114 (467)
T PRK14718 78 ------------LY--------EIAQALNI--SDGLRLG----EGELRSG--GFRRPSILADAFE--------------- 114 (467)
T ss_pred ------------HH--------HHHHHcCc--hHHHhhC----CcccccC--CCCChhHHHHHHH---------------
Confidence 11 11112222 1100000 0000000 0000111211110
Q ss_pred eEEEEEEEEEcCeEEEEEEEeCCHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCcCCCccccCCCCCCCCCcccccccCc
Q 000384 1384 MVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEVCEKRISKGASNTGKLGDDCRQTTKEDLPEPPSCKRQKGT 1463 (1590)
Q Consensus 1384 ~~~~~~~v~~~g~~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1463 (1590)
-+...||+|++ ..+++..+..+...
T Consensus 115 --ALIGAIYLDsG---------------~e~a~~fI~~ll~p-------------------------------------- 139 (467)
T PRK14718 115 --AIIGAVFLDGG---------------FEAAQGVIKRLYVP-------------------------------------- 139 (467)
T ss_pred --HHHHHHHHccC---------------HHHHHHHHHHHHHH--------------------------------------
Confidence 11244566665 56777777776651
Q ss_pred cccccCCCcccccccccCCCcccccc--ccccCCchhhHHHHHHhCCCCCCceeEeecccccccccccCCcccccceeeE
Q 000384 1464 EAAIPAGDSCKKAYCMTVGTPVVAPI--NMKKGGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFV 1541 (1590)
Q Consensus 1464 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~k~~L~e~~~~~~~~~P~y~~~~~~~~~~~~~~~Gp~h~~~~~~F~ 1541 (1590)
..+.+ .....|||+.||||||++++..|+|+++.+ +||+|. +.|+
T Consensus 140 ---------------------~i~~~d~~~~~kDyKS~LQE~~Qk~~~~~PeY~li~e---------sGPdH~---k~F~ 186 (467)
T PRK14718 140 ---------------------ILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVAT---------HGAAHN---QQFE 186 (467)
T ss_pred ---------------------HHhhhcccccccCHHHHHHHHHHhcCCCCCeeEEeee---------ecCCCC---CeEE
Confidence 00000 011368999999999999999999999988 899999 8999
Q ss_pred EEEEEEecCCceEEEeCCCCCCccchhhhHHHHHHHHHH
Q 000384 1542 SKITLHIPEFGNVECNGDPRADKKSSFDSAALIMLHELE 1580 (1590)
Q Consensus 1542 ~~v~i~~~~~~~~~~~g~~~~sKK~A~~~AA~~~l~~l~ 1580 (1590)
+.|.+. +..+.+.|.| +|||+|||.||+.||+.|+
T Consensus 187 V~V~v~---g~~~~G~G~G-~SKKeAEQ~AAk~AL~kL~ 221 (467)
T PRK14718 187 VECTVP---KLDIKVSGSG-ASRRAAEQAAAKKALDEVT 221 (467)
T ss_pred EEEEEC---CeeeEEEEEc-CCHHHHHHHHHHHHHHHhc
Confidence 888873 2234456666 6699999999999999986
|
|
| >PRK12371 ribonuclease III; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-20 Score=209.37 Aligned_cols=205 Identities=15% Similarity=0.143 Sum_probs=136.2
Q ss_pred CChHHHHHHHHHhCCccCCHHHHHHHHccCCCCC--CcchH----------------HHHHHhcccChHHHHHHHHHHHc
Q 000384 1235 PRINEIKDIESKIGYEFTVKFLLQEAITHASVQE--FYCYQ----------------NLYKHLQHCSTLLLSQITEYVKS 1296 (1590)
Q Consensus 1235 ~~~~~~~~le~~lgy~F~~~~LL~~AlTH~S~~~--~~~ye----------------~L~~~~~~~~~~~~~~i~~~~~~ 1296 (1590)
+....+..||++|||+|+|+.||.+||||+|+.. ..||| +||..+|..++|.++.++..++.
T Consensus 7 ~~~~~~~~le~~lgy~F~~~~Ll~~AlTH~S~~~~~~~~~eRLEFLGDavL~l~vs~~Lf~~~p~~~eG~Lt~~rs~lV~ 86 (235)
T PRK12371 7 LAAATASILEERTGHRFANKERLERALTHSSARASKQGNYERLEFLGDRVLGLCVAEMLFEAFPDASEGELSVRLNQLVN 86 (235)
T ss_pred CCHHHHHHHHHHHCCCCCCHHHHHHHHcCcCcccCCccchHhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhC
Confidence 3455788999999999999999999999999976 45889 78999999999999988877765
Q ss_pred CCCCCCCCCCCCCCCCCchhhhHHHHHHhceeecCCCChHHHHHHHHhhhccccCCC--CCCCChhhHHHHHHHhcCCcc
Q 000384 1297 FPKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPD--KLELPPLRELIELCDSLGYFV 1374 (1590)
Q Consensus 1297 ~~~~~~~~~~~~~~~~~k~l~D~~Ea~iGAi~lDsg~~~~~~~~~~~~~l~~~i~~~--~~~~~P~~~L~e~~~~~~~~~ 1374 (1590)
-. .++.+-.+-|+ ..++..-.... .....+ ..|.....
T Consensus 87 n~------------------------~La~ia~~lgL---------~~~i~~~~~~~~~~~~~~~-~ilad~~E------ 126 (235)
T PRK12371 87 AE------------------------TCAAIADEIGL---------HDLIRTGSDVKKLTGKRLL-NVRADVVE------ 126 (235)
T ss_pred hH------------------------HHHHHHHHCCc---------HHHhccCcchhhcCCcccc-hHHHHHHH------
Confidence 11 11111122222 11111000000 000000 01111000
Q ss_pred eeeeeeeCceEEEEEEEEEcCeEEEEEEEeCCHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCcCCCccccCCCCCCCCC
Q 000384 1375 KENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEVCEKRISKGASNTGKLGDDCRQTTKEDLPEP 1454 (1590)
Q Consensus 1375 ~~~~~~~g~~~~~~~~v~~~g~~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1454 (1590)
.+...|++|++ ..+|+..+..+... ..
T Consensus 127 -----------AliGAiylD~G---------------~~~a~~~i~~~~~~-~~-------------------------- 153 (235)
T PRK12371 127 -----------ALIAAIYLDGG---------------LEAARPFIQRYWQK-RA-------------------------- 153 (235)
T ss_pred -----------HHHHHHHHcCC---------------HHHHHHHHHHHHHH-HH--------------------------
Confidence 01134555555 67777777776651 00
Q ss_pred cccccccCccccccCCCcccccccccCCCccccccccccCCchhhHHHHHHhCCCCCCceeEeecccccccccccCCccc
Q 000384 1455 PSCKRQKGTEAAIPAGDSCKKAYCMTVGTPVVAPINMKKGGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKR 1534 (1590)
Q Consensus 1455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~L~e~~~~~~~~~P~y~~~~~~~~~~~~~~~Gp~h~ 1534 (1590)
..+.....|||+.||||||++++..|.|+++++ +||+|.
T Consensus 154 --------------------------------~~~~~~~~d~Ks~LqE~~q~~~~~~p~Y~~~~~---------~Gp~h~ 192 (235)
T PRK12371 154 --------------------------------LETDAARRDAKTELQEWAHAQFGVTPVYRVDSR---------SGPDHD 192 (235)
T ss_pred --------------------------------hccccccCCHHHHHHHHHHhcCCCCCeEEEEEe---------ecCCCC
Confidence 000112468999999999999999999999987 899999
Q ss_pred ccceeeEEEEEEEecCCceEEEeCCCCCCccchhhhHHHHHHHHHHH
Q 000384 1535 TGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAALIMLHELER 1581 (1590)
Q Consensus 1535 ~~~~~F~~~v~i~~~~~~~~~~~g~~~~sKK~A~~~AA~~~l~~l~~ 1581 (1590)
+.|+|+|.+. +...+.|.| +|||+|||.||+.||..|..
T Consensus 193 ---~~F~v~v~v~----~~~~~~g~G-~sKK~Ae~~AA~~al~~~~~ 231 (235)
T PRK12371 193 ---PRFTVEVEVK----GFAPETGEG-RSKRAAEQVAAEKMLEREGV 231 (235)
T ss_pred ---CeEEEEEEEC----CEEEEEeee-CCHHHHHHHHHHHHHHHhhh
Confidence 8999988873 444566766 67999999999999998864
|
|
| >COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-19 Score=230.86 Aligned_cols=151 Identities=19% Similarity=0.232 Sum_probs=126.6
Q ss_pred CCCCCCcHHHHHHHHHHh-cCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhhcCC
Q 000384 41 SINFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDF 119 (1590)
Q Consensus 41 ~~~~~pR~yQ~e~le~~~-~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~~~ 119 (1590)
...|.|-++|++++..+- +.+++|++|||+|||+++..+|...+. .+.++++..|.+||.+|.+..|...++-
T Consensus 115 ~~~F~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~------~~qrviYTsPIKALsNQKyrdl~~~fgd 188 (1041)
T COG4581 115 EYPFELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALR------DGQRVIYTSPIKALSNQKYRDLLAKFGD 188 (1041)
T ss_pred hCCCCcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHH------cCCceEeccchhhhhhhHHHHHHHHhhh
Confidence 467999999999998875 589999999999999999998877665 3444999999999999999999988774
Q ss_pred c---eEEEecCCCCCccchHHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCCCc---HHHHHHHH
Q 000384 120 E---VEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHP---YTKIMKEF 193 (1590)
Q Consensus 120 ~---v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~~~---~~~im~~~ 193 (1590)
- +++++|+..++. ++.|+|||.++|.+++.++-..+.++..|||||+|-+.+... |..++.
T Consensus 189 v~~~vGL~TGDv~IN~-----------~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii-- 255 (1041)
T COG4581 189 VADMVGLMTGDVSINP-----------DAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVII-- 255 (1041)
T ss_pred hhhhccceecceeeCC-----------CCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHH--
Confidence 3 789999988775 789999999999999999988899999999999999875321 333332
Q ss_pred HhcCCCCCcEEEEeccCCc
Q 000384 194 YHKSDNKPKVFGMTASPVV 212 (1590)
Q Consensus 194 ~~~~~~~priLgLTATP~~ 212 (1590)
..+...++++||||..+
T Consensus 256 --~lP~~v~~v~LSATv~N 272 (1041)
T COG4581 256 --LLPDHVRFVFLSATVPN 272 (1041)
T ss_pred --hcCCCCcEEEEeCCCCC
Confidence 34566799999999654
|
|
| >KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.8e-20 Score=216.86 Aligned_cols=370 Identities=19% Similarity=0.242 Sum_probs=231.0
Q ss_pred CCCCCcHHHHHHHHHHh-cCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhhcCCc
Q 000384 42 INFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFE 120 (1590)
Q Consensus 42 ~~~~pR~yQ~e~le~~~-~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~~~~ 120 (1590)
-.|++-|+|..++.++- ++.++|.+.|.+|||.+|-..|..-+. .+.+|++..|-++|.+|-++++...++ .
T Consensus 126 YPF~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr------~kQRVIYTSPIKALSNQKYREl~~EF~-D 198 (1041)
T KOG0948|consen 126 YPFTLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLR------EKQRVIYTSPIKALSNQKYRELLEEFK-D 198 (1041)
T ss_pred CCcccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHH------hcCeEEeeChhhhhcchhHHHHHHHhc-c
Confidence 46889999999998885 588999999999999999998887766 566799999999999999999998775 6
Q ss_pred eEEEecCCCCCccchHHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCCCcHHHHHHHHHhcCCCC
Q 000384 121 VEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK 200 (1590)
Q Consensus 121 v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~~~~~~im~~~~~~~~~~ 200 (1590)
|+.++|+...+. ++..+|||.++|..+|-+|.--|..+.+|||||.|-+.+.... -+..+-....+..
T Consensus 199 VGLMTGDVTInP-----------~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERG-VVWEETIIllP~~ 266 (1041)
T KOG0948|consen 199 VGLMTGDVTINP-----------DASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERG-VVWEETIILLPDN 266 (1041)
T ss_pred cceeecceeeCC-----------CCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccc-eeeeeeEEecccc
Confidence 889999988765 6789999999999999999888999999999999999764221 1111111224667
Q ss_pred CcEEEEeccCCccCCCCChhcHHHHHHHHHhhcCCeeEeecchhhhhhcccCcceeeEeccCCCCcccchhhhHHHhhhh
Q 000384 201 PKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSK 280 (1590)
Q Consensus 201 priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~~~~~~~~l~~~~~~p~~~~~~y~~~~~~~~~l~~~~~~~~~~ 280 (1590)
.|.+.||||.-+. .++.+.+..+..--...+||- |.+.|-. .+.|..- ..++...+
T Consensus 267 vr~VFLSATiPNA------~qFAeWI~~ihkQPcHVVYTd--------yRPTPLQ-HyifP~g---gdGlylvV------ 322 (1041)
T KOG0948|consen 267 VRFVFLSATIPNA------RQFAEWICHIHKQPCHVVYTD--------YRPTPLQ-HYIFPAG---GDGLYLVV------ 322 (1041)
T ss_pred ceEEEEeccCCCH------HHHHHHHHHHhcCCceEEeec--------CCCCcce-eeeecCC---CCeeEEEE------
Confidence 8999999996543 466777777766554444442 1111111 0111100 00000000
Q ss_pred hhhhHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHhHHHHHHHHhhhhHHHHHH
Q 000384 281 FDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYF 360 (1590)
Q Consensus 281 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (1590)
+.+..|.+ ..+.+....+..-|
T Consensus 323 ----------Dek~~Fre-------------dnF~~am~~l~~~~----------------------------------- 344 (1041)
T KOG0948|consen 323 ----------DEKGKFRE-------------DNFQKAMSVLRKAG----------------------------------- 344 (1041)
T ss_pred ----------ecccccch-------------HHHHHHHHHhhccC-----------------------------------
Confidence 00000100 00001000000000
Q ss_pred HHHHHHHHhhhcCcchhhhccccC-CccccccCCCCCHHHHHHHHHHHhcCCCCCcEEEEEEehHHHHHHHHHHHhhC--
Q 000384 361 LEEVLHVIGSALPLADKIFLDFGF-DYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKV-- 437 (1590)
Q Consensus 361 ~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~-- 437 (1590)
... ..-..... ........+.-..-+.++++.+-. .....+|||+-++..++.++-.+.++
T Consensus 345 ------------~~~-~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~---~~~~PVIvFSFSkkeCE~~Alqm~kldf 408 (1041)
T KOG0948|consen 345 ------------ESD-GKKKANKKGRKGGTGGKGPGDSDIYKIVKMIME---RNYLPVIVFSFSKKECEAYALQMSKLDF 408 (1041)
T ss_pred ------------CCc-cccccccccccCCcCCCCCCcccHHHHHHHHHh---hcCCceEEEEecHhHHHHHHHhhccCcC
Confidence 000 00000000 000000011112234444443322 23346999999999887777655442
Q ss_pred ---------------------------CCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCceEEEEcccccccccC
Q 000384 438 ---------------------------PFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHV 490 (1590)
Q Consensus 438 ---------------------------~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~~vLVaT~vleeGIDi 490 (1590)
|.+.++.+....|-+.++.++-+--++-+.-.|.+|-+++|+||....-|||+
T Consensus 409 N~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNM 488 (1041)
T KOG0948|consen 409 NTDEEKELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNM 488 (1041)
T ss_pred CChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCC
Confidence 11222223334455555555766666666667999999999999999999999
Q ss_pred CCccEEE----EccCC----CCHHHHHHHhccccccCce----EEEEecc
Q 000384 491 PNCSYVI----RFDLP----KTVSSYIQSRGRARQHNSQ----FILMLER 528 (1590)
Q Consensus 491 p~~~~VI----~fD~p----~s~~~yiQr~GRA~R~gs~----~ivlv~~ 528 (1590)
|+-++|+ -||-- -|.-.|||+.|||||.|-. .|+|+++
T Consensus 489 PAkTVvFT~~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDe 538 (1041)
T KOG0948|consen 489 PAKTVVFTAVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDE 538 (1041)
T ss_pred cceeEEEeeccccCCcceeeecccceEEecccccccCCCCCceEEEEecC
Confidence 9877776 35532 2667899999999999842 5666653
|
|
| >KOG3732 consensus Staufen and related double-stranded-RNA-binding proteins [Intracellular trafficking, secretion, and vesicular transport; Transcription] | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.7e-20 Score=202.11 Aligned_cols=170 Identities=25% Similarity=0.277 Sum_probs=122.7
Q ss_pred CChhhHHHHHHHhcCCcceeeeee-eCce--EEEEEEEEEcCeEEEEEEEeCCHHHHHHHHHHHHHHHhhhhhhhcccCC
Q 000384 1357 LPPLRELIELCDSLGYFVKENCTL-KGEM--VHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEVCEKRISKGA 1433 (1590)
Q Consensus 1357 ~~P~~~L~e~~~~~~~~~~~~~~~-~g~~--~~~~~~v~~~g~~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~~~~~~~~ 1433 (1590)
+.|++.|+|++.+.+..+.+.+.. +|+. +.|++.|.++ .+.+.|.|+|||.||++||..+|..|+..-..
T Consensus 38 KS~IS~l~E~~~r~~~~v~fevl~eeGp~H~~~fv~rvtvg--~~~a~GeG~sKK~AKh~AA~~~L~~lk~l~~l----- 110 (339)
T KOG3732|consen 38 KSPISLLQEYGLRRGLTPVYEVLREEGPPHMPNFVFRVTVG--EITATGEGKSKKLAKHRAAEALLKELKKLPPL----- 110 (339)
T ss_pred CChHHHHHHHHHHhCCCcceeeeeccCCccCCCeEEEEEEe--eeEEecCCCchhHHHHHHHHHHHHHHhcCCCc-----
Confidence 899999999999999988866655 5664 6788888885 49999999999999999999999999981000
Q ss_pred CCCCcCCCccccCCCCCCCCCcccccccCccccccCCCcccccccccCCCccccccccccCCchhhHHHHHHhCCCCCCc
Q 000384 1434 SNTGKLGDDCRQTTKEDLPEPPSCKRQKGTEAAIPAGDSCKKAYCMTVGTPVVAPINMKKGGPRTSLFQLCKTMLWPMPT 1513 (1590)
Q Consensus 1434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~L~e~~~~~~~~~P~ 1513 (1590)
++..+. ......... .+.. + ..+ .++......||+++|||+||+++|+.|+
T Consensus 111 ~~v~k~---------~~~~~~~~~-----------~~~~--~------~q~-~d~~~~~~~NPI~~L~e~~q~k~~k~P~ 161 (339)
T KOG3732|consen 111 ANVRKD---------SLKFAKMKS-----------SGVK--K------DQP-GDPEYGQVLNPIGRLQELAQAKKWKLPE 161 (339)
T ss_pred cccccC---------ccccccccc-----------CCcc--c------cCC-CCcccccccChHHHHHHHHHHhCCCCCc
Confidence 000000 000000000 0000 0 000 0111122578999999999999999999
Q ss_pred eeEeecccccccccccCCcccccceeeEEEEEEEecCCceEEEeCCCCCCccchhhhHHHHHHHHHH
Q 000384 1514 FETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAALIMLHELE 1580 (1590)
Q Consensus 1514 y~~~~~~~~~~~~~~~Gp~h~~~~~~F~~~v~i~~~~~~~~~~~g~~~~sKK~A~~~AA~~~l~~l~ 1580 (1590)
|+++++ .|++|. |+||..|++. .+...|.| .|||.||++||.+||..|.
T Consensus 162 yelv~E---------~G~~~~---rEFv~q~sv~-----~~~~~GkG-~sKKiAKRnAAeamLe~l~ 210 (339)
T KOG3732|consen 162 YELVQE---------SGVPHR---REFVIQCSVE-----NFTEEGKG-PSKKIAKRNAAEAMLESLG 210 (339)
T ss_pred eEEEec---------cCCCcc---ceEEEEEEec-----ceeeecCC-chHHHHHHHHHHHHHHHhc
Confidence 999999 899999 9999888873 33455666 6799999999999999886
|
|
| >PRK12372 ribonuclease III; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.1e-20 Score=214.23 Aligned_cols=202 Identities=19% Similarity=0.207 Sum_probs=132.1
Q ss_pred HHHHHHHhCCccCCHHHHHHHHccCCCCCCcchH----------------HHHHHhcccChHHHHHHHHHHHcCCCCCCC
Q 000384 1240 IKDIESKIGYEFTVKFLLQEAITHASVQEFYCYQ----------------NLYKHLQHCSTLLLSQITEYVKSFPKPGET 1303 (1590)
Q Consensus 1240 ~~~le~~lgy~F~~~~LL~~AlTH~S~~~~~~ye----------------~L~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 1303 (1590)
+..||++|||+|+|+.||.+||||+||.. .||| +||+.|+..++|.++.++..++.-..
T Consensus 3 l~~LEk~LGY~Fkn~~LL~eALTH~Sy~~-~~NERLEFLGDAVL~liVse~Lf~~fP~~~EG~LT~lRS~LVsn~t---- 77 (413)
T PRK12372 3 LSQLESRLRYEFRNAELLRQALTHRSHSA-THNERLEFLGDSVLNCAVAALLFQRFGKLDEGDLSRVRANLVKQQS---- 77 (413)
T ss_pred HHHHHHHhCCCcCCHHHHHHHHhcccccc-ccHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhHH----
Confidence 46799999999999999999999999865 4788 88999999999999999998876111
Q ss_pred CCCCCCCCCCchhhhHHHHHHhceeecCCCChHHHHHHHHhhhccccCCCCCCCChhhHHHHHHHhcCCcceeeeeeeCc
Q 000384 1304 TDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELCDSLGYFVKENCTLKGE 1383 (1590)
Q Consensus 1304 ~~~~~~~~~~k~l~D~~Ea~iGAi~lDsg~~~~~~~~~~~~~l~~~i~~~~~~~~P~~~L~e~~~~~~~~~~~~~~~~g~ 1383 (1590)
| +.|-.+-|+ .....+- ....... .....+.|.....
T Consensus 78 ------------L--------A~IA~~LgL--~~~Lrlg----~ge~~sg--g~~~~kILADvfE--------------- 114 (413)
T PRK12372 78 ------------L--------YEIAQALNI--SEGLRLG----EGELRSG--GFRRPSILADAFE--------------- 114 (413)
T ss_pred ------------H--------HHHHHHcCc--hHhhhcC----cchhhcC--CCCCccHHHHHHH---------------
Confidence 1 111112222 1000000 0000000 0000111111100
Q ss_pred eEEEEEEEEEcCeEEEEEEEeCCHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCcCCCccccCCCCCCCCCcccccccCc
Q 000384 1384 MVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEVCEKRISKGASNTGKLGDDCRQTTKEDLPEPPSCKRQKGT 1463 (1590)
Q Consensus 1384 ~~~~~~~v~~~g~~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1463 (1590)
-+...||+|++ ..+++..+..+...
T Consensus 115 --ALIGAIYLDsG---------------~e~a~~fV~~ll~p-------------------------------------- 139 (413)
T PRK12372 115 --AIIGAVFLDGG---------------FEAAQGVIKRLYVP-------------------------------------- 139 (413)
T ss_pred --HHHHHHHHhCC---------------HHHHHHHHHHHHHH--------------------------------------
Confidence 01234566655 55777777776541
Q ss_pred cccccCCCcccccccccCCCccccccc--cccCCchhhHHHHHHhCCCCCCceeEeecccccccccccCCcccccceeeE
Q 000384 1464 EAAIPAGDSCKKAYCMTVGTPVVAPIN--MKKGGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFV 1541 (1590)
Q Consensus 1464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~k~~L~e~~~~~~~~~P~y~~~~~~~~~~~~~~~Gp~h~~~~~~F~ 1541 (1590)
..+.++ ....|||+.||||||++++..|+|+++.+ +||+|+ +.|+
T Consensus 140 ---------------------~l~~~~~~~~~~D~KS~LQE~~Q~~~~~~P~Y~lv~e---------~Gp~h~---~~F~ 186 (413)
T PRK12372 140 ---------------------ILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVAT---------HGAAHN---QQFE 186 (413)
T ss_pred ---------------------HHhhcccccccCCHHHHHHHHHHhcCCCCCeeEEeee---------ecCCCC---ceEE
Confidence 000000 11357999999999999999999999988 899999 8999
Q ss_pred EEEEEEecCCceEEEeCCCCCCccchhhhHHHHHHHHHHH
Q 000384 1542 SKITLHIPEFGNVECNGDPRADKKSSFDSAALIMLHELER 1581 (1590)
Q Consensus 1542 ~~v~i~~~~~~~~~~~g~~~~sKK~A~~~AA~~~l~~l~~ 1581 (1590)
+.|.+. +..+.+.|.| +|||+|||.||+.||+.|..
T Consensus 187 V~V~v~---g~~~~g~G~G-~SKKeAEQ~AAr~AL~kL~~ 222 (413)
T PRK12372 187 VECTVP---KLDVKVSGSG-ASRRAAEQAAAKKALDEVMA 222 (413)
T ss_pred EEEEEC---CeEEEEEEEe-CCHHHHHHHHHHHHHHHHhc
Confidence 888873 2234456666 66999999999999999973
|
|
| >KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.9e-20 Score=207.08 Aligned_cols=326 Identities=18% Similarity=0.247 Sum_probs=206.6
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHhc----CCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHH
Q 000384 36 SSSTNSINFIPRIYQLKVFEVAKR----RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYD 111 (1590)
Q Consensus 36 ~~~~~~~~~~pR~yQ~e~le~~~~----~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~ 111 (1590)
.........++||||...+.++.+ +..||++|+|+|||++.+-.+.. -++++|+||.+..-|+||..
T Consensus 293 l~idLKPst~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~t---------ikK~clvLcts~VSVeQWkq 363 (776)
T KOG1123|consen 293 LDIDLKPSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACT---------IKKSCLVLCTSAVSVEQWKQ 363 (776)
T ss_pred CCcCcCcccccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeee---------ecccEEEEecCccCHHHHHH
Confidence 334445667889999999999874 77999999999999988776543 35669999999999999999
Q ss_pred HHHhhcCCc---eEEEecCCCCCccchHHHHHhcCCCcEEEEcHHHHHHHHHh--------cCcCccceeEEEEeccccc
Q 000384 112 VIRVHTDFE---VEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK--------AFLSLDIVCFIVIDECHHA 180 (1590)
Q Consensus 112 ~i~~~~~~~---v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~--------~~~~l~~i~lII~DEaH~~ 180 (1590)
.|..|..+. +..++.+... ....++.|+|+|+.++..--.+ .++.-..|.++|+||+|-+
T Consensus 364 Qfk~wsti~d~~i~rFTsd~Ke---------~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvv 434 (776)
T KOG1123|consen 364 QFKQWSTIQDDQICRFTSDAKE---------RFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVV 434 (776)
T ss_pred HHHhhcccCccceEEeeccccc---------cCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccc
Confidence 999997653 4555543321 1234789999999988432111 2455678999999999988
Q ss_pred cCCCcHHHHHHHHHhcCCCCCcEEEEeccCCccCCCCChhcHHHHHHHHHhhcCCeeEeecchhhhhhcccCcceeeEec
Q 000384 181 TGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFY 260 (1590)
Q Consensus 181 ~~~~~~~~im~~~~~~~~~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~~~~~~~~l~~~~~~p~~~~~~y 260 (1590)
.. +-|++++...-+.. .||||||.++.++. |.+|--+++.++|..
T Consensus 435 PA-~MFRRVlsiv~aHc-----KLGLTATLvREDdK---------I~DLNFLIGPKlYEA-------------------- 479 (776)
T KOG1123|consen 435 PA-KMFRRVLSIVQAHC-----KLGLTATLVREDDK---------ITDLNFLIGPKLYEA-------------------- 479 (776)
T ss_pred hH-HHHHHHHHHHHHHh-----hccceeEEeecccc---------ccccceeecchhhhc--------------------
Confidence 54 25676665432222 39999999987642 223322222222221
Q ss_pred cCCCCcccchhhhHHHhhhhhhhhHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Q 000384 261 DQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKV 340 (1590)
Q Consensus 261 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~ 340 (1590)
.|..+... .+ +...+....||....
T Consensus 480 ----------------nWmdL~~k----------Gh---------------------IA~VqCaEVWCpMt~-------- 504 (776)
T KOG1123|consen 480 ----------------NWMDLQKK----------GH---------------------IAKVQCAEVWCPMTP-------- 504 (776)
T ss_pred ----------------cHHHHHhC----------Cc---------------------eeEEeeeeeecCCCH--------
Confidence 11111100 00 000001112443110
Q ss_pred HhHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcCcchhhhccccCCccccccCCCCCHHHHHHHHHHHhcCCCCCcEEEEE
Q 000384 341 LKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIF 420 (1590)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~k~IIF 420 (1590)
..+.+|+...... ...+. ...|.-....+.|-.|++..+.++|||
T Consensus 505 --------------eFy~eYL~~~t~k-r~lLy--------------------vMNP~KFraCqfLI~~HE~RgDKiIVF 549 (776)
T KOG1123|consen 505 --------------EFYREYLRENTRK-RMLLY--------------------VMNPNKFRACQFLIKFHERRGDKIIVF 549 (776)
T ss_pred --------------HHHHHHHhhhhhh-hheee--------------------ecCcchhHHHHHHHHHHHhcCCeEEEE
Confidence 0011111100000 00000 012222233344444444567799999
Q ss_pred EehHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCC-CceEEEEcccccccccCCCccEEEEc
Q 000384 421 VERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGG-KVNLLFATDVIEEGMHVPNCSYVIRF 499 (1590)
Q Consensus 421 v~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g-~~~vLVaT~vleeGIDip~~~~VI~f 499 (1590)
..........+-.|.+ -++.|. .++.+|.++++.|+.+ .+|.++-..|+...||+|.+|++|..
T Consensus 550 sDnvfALk~YAikl~K---------pfIYG~------Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQI 614 (776)
T KOG1123|consen 550 SDNVFALKEYAIKLGK---------PFIYGP------TSQNERMKILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQI 614 (776)
T ss_pred eccHHHHHHHHHHcCC---------ceEECC------CchhHHHHHHHhcccCCccceEEEeeccCccccCCcccEEEEE
Confidence 9987765555544443 256677 5899999999999965 59999999999999999999999988
Q ss_pred cC-CCCHHHHHHHhccccccC
Q 000384 500 DL-PKTVSSYIQSRGRARQHN 519 (1590)
Q Consensus 500 D~-p~s~~~yiQr~GRA~R~g 519 (1590)
.. -.|-++-.||.||.-|+.
T Consensus 615 SSH~GSRRQEAQRLGRILRAK 635 (776)
T KOG1123|consen 615 SSHGGSRRQEAQRLGRILRAK 635 (776)
T ss_pred cccccchHHHHHHHHHHHHHh
Confidence 74 457888999999997754
|
|
| >KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.2e-19 Score=205.93 Aligned_cols=444 Identities=16% Similarity=0.221 Sum_probs=257.0
Q ss_pred CCCCcHHHHHHHHHHh-----cCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhhc
Q 000384 43 NFIPRIYQLKVFEVAK-----RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT 117 (1590)
Q Consensus 43 ~~~pR~yQ~e~le~~~-----~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~ 117 (1590)
.-++.+||...++++. +=|.|+++++|.|||+.++.++.++.+...-+++ .||++|...| ..|+++|.+++
T Consensus 565 ~ctLKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQsisvlAhLaE~~nIwGP---FLVVtpaStL-~NWaqEisrFl 640 (1185)
T KOG0388|consen 565 KCTLKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQSISVLAHLAETHNIWGP---FLVVTPASTL-HNWAQEISRFL 640 (1185)
T ss_pred hhhhHHHhhccHHHHHHHHHccccceehhhhccchhHHHHHHHHHHHHhccCCCc---eEEeehHHHH-hHHHHHHHHhC
Confidence 4568999999999885 4789999999999999999999998874333333 7999998777 67999999998
Q ss_pred -CCceEEEecCCCCCc-----cchHHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCCC--cHHHH
Q 000384 118 -DFEVEEYYGAKGVDE-----WDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNH--PYTKI 189 (1590)
Q Consensus 118 -~~~v~~~~G~~~~d~-----~~~~~w~~~~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~~--~~~~i 189 (1590)
.+++.-|.|+.+... |............+|+|+|+|.+... ..++.--.|.++|+|||+.++... .|..+
T Consensus 641 P~~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtD--eky~qkvKWQYMILDEAQAIKSSsS~RWKtL 718 (1185)
T KOG0388|consen 641 PSFKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTD--EKYLQKVKWQYMILDEAQAIKSSSSSRWKTL 718 (1185)
T ss_pred ccceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeech--HHHHHhhhhhheehhHHHHhhhhhhhHHHHH
Confidence 589999999876432 33222223446789999999988432 223334567899999999987542 24444
Q ss_pred HHHHHhcCCCCCcEEEEeccCCccCCCCChhcHHHHHHHHHhhcCCeeEee-cchhhhhhcccCcceeeEeccCCCCccc
Q 000384 190 MKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTI-EDKTEMEVFVPSAKESCRFYDQSKFCGS 268 (1590)
Q Consensus 190 m~~~~~~~~~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~~~-~~~~~l~~~~~~p~~~~~~y~~~~~~~~ 268 (1590)
+. | .+.-+|+||+||++++ +.+|..+|+-..-.. ....++..++.+--|....-. .
T Consensus 719 Ls-F-----~cRNRLLLTGTPIQNs-----------MqELWALLHFIMPsLFDshneFseWFSKdIEshAe~~------~ 775 (1185)
T KOG0388|consen 719 LS-F-----KCRNRLLLTGTPIQNS-----------MQELWALLHFIMPSLFDSHNEFSEWFSKDIESHAEMN------T 775 (1185)
T ss_pred hh-h-----hccceeeecCCccchH-----------HHHHHHHHHHHhhHhhhchHHHHHHHhhhhHhHHHhc------C
Confidence 33 2 3456799999999876 455555554221111 122333333333222111110 0
Q ss_pred ch-hhhHHHhhhhhhhhHHH-HHhhhhhh---------hccchhhHHHHHHHHHHHHHHH--HHHHHHhhhhHHHH----
Q 000384 269 DL-KGKLEVSWSKFDASLSK-LQGSQLNC---------YKDMDDKHKTLRKQLSDYHAKI--LYCLDELGLICAYE---- 331 (1590)
Q Consensus 269 ~l-~~~~~~~~~~~~~~~~~-l~~~~~~~---------~~~~~~~~~~~~~~l~~~~~~~--~~~~~~lg~~~a~~---- 331 (1590)
.+ .+.+.....-+.+++.. ..+...+. |-++...-+.+.+.+++..... ..+...+..-|...
T Consensus 776 tlneqqL~RLH~ILKPFMLRRvKkdV~sELg~Kteidv~CdLs~RQ~~lYq~ik~~iS~~E~~~~vmQlrKVCNHPdLFe 855 (1185)
T KOG0388|consen 776 TLNEQQLQRLHAILKPFMLRRVKKDVISELGQKTEIDVYCDLSYRQKVLYQEIKRSISSMEMENLVMQLRKVCNHPDLFE 855 (1185)
T ss_pred CcCHHHHHHHHHHHhHHHHHHHHHHHHHHhccceEEEEEechhHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCChHHHh
Confidence 11 12222222223333322 12222222 2233333233333333222111 11222222222100
Q ss_pred --------------------------------------HHHHHHHHhHhHHHHHHHHh---------hhh----------
Q 000384 332 --------------------------------------AVKICLEKVLKAQEECEIYR---------QSS---------- 354 (1590)
Q Consensus 332 --------------------------------------~~~~~~~~~~~~~~~~~~~~---------~~~---------- 354 (1590)
+++....++...-....... .|.
T Consensus 856 r~e~~s~L~~~V~~nl~dv~S~Grnpi~ykiP~L~~~d~le~~~fniye~i~~~~g~~~~v~Geg~~~w~~~l~~e~k~G 935 (1185)
T KOG0388|consen 856 RLEPRSGLSLEVSDNLGDVVSFGRNPIDYKIPSLVAKDALEMFRFNIYEMIERINGLRRIVNGEGPNAWYLRLSLEFKYG 935 (1185)
T ss_pred hcCCcceeEEEcccCHHHHHhCCCCceeecchHHHHHHHHHHHHHhHHHHHHHHhhhHhhhcCCCcchhcccceeeeccC
Confidence 00000000000000000000 000
Q ss_pred --------HH--------------HHHHHHHHHH----HHh----hhcCcc--hhhhccccCCcc---------------
Q 000384 355 --------LQ--------------CKYFLEEVLH----VIG----SALPLA--DKIFLDFGFDYS--------------- 387 (1590)
Q Consensus 355 --------~~--------------~~~~~~~~~~----~i~----~~~~~~--~~~~~~~~~~~~--------------- 387 (1590)
.. ..+....++. .+. .+.+.. ...++....+..
T Consensus 936 ~~~~~n~e~~~Kavtr~ll~p~~~~~e~~~rvi~~e~~~L~~~~y~y~P~v~apPvLI~~ead~PeId~E~~~~pLn~~i 1015 (1185)
T KOG0388|consen 936 GYVFRNVEEAGKAVTRNLLNPESSLLESMRRVIDEEAYRLQRHVYCYSPVVAAPPVLISNEADLPEIDLENRHIPLNTTI 1015 (1185)
T ss_pred CcccccHHHHHHHHHHHhcCcccchhHHHHHHhhHHHHHhhhheeeeccccCCCCeeeecccCCCCCCccccCcccccce
Confidence 00 0000000000 000 000000 000000000000
Q ss_pred ---ccccCCCCCHHHHHHHHHHHhcCCCCCcEEEEEEehHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHH
Q 000384 388 ---KAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQK 464 (1590)
Q Consensus 388 ---~~~~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~~~~~~r~ 464 (1590)
.....-..|.|+..|-++|.... ..++++++|.+...+.+.+.++|.- .++....+.|. ....+|.
T Consensus 1016 ~~Ppm~~FitdSgKL~~LDeLL~kLk-aegHRvL~yfQMTkM~dl~EdYl~y----r~Y~ylRLDGS------sk~~dRr 1084 (1185)
T KOG0388|consen 1016 YVPPMNTFITDSGKLVVLDELLPKLK-AEGHRVLMYFQMTKMIDLIEDYLVY----RGYTYLRLDGS------SKASDRR 1084 (1185)
T ss_pred ecCcHHhhhccccceeeHHHHHHHhh-cCCceEEehhHHHHHHHHHHHHHHh----hccceEEecCc------chhhHHH
Confidence 00001123789999999888776 5689999999999999999999976 67888889998 5788999
Q ss_pred HHHHHhcCCC-ceEEEEcccccccccCCCccEEEEccCCCCHHHHHHHhccccccCceEEEEe
Q 000384 465 EVLESFRGGK-VNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILML 526 (1590)
Q Consensus 465 ~vl~~Fr~g~-~~vLVaT~vleeGIDip~~~~VI~fD~p~s~~~yiQr~GRA~R~gs~~ivlv 526 (1590)
+++.+|...+ +-+|++|.+++.||++.+++.||+||..||+..-.|.+.||+|-|+.--+-|
T Consensus 1085 d~vrDwQ~sdiFvFLLSTRAGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtv 1147 (1185)
T KOG0388|consen 1085 DVVRDWQASDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTV 1147 (1185)
T ss_pred HHHhhccCCceEEEEEecccCcccccccccceEEEecCCCCcchhhHHHHHHHhccCccceee
Confidence 9999999865 6789999999999999999999999999999999999999999998733333
|
|
| >KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.5e-20 Score=223.86 Aligned_cols=423 Identities=16% Similarity=0.146 Sum_probs=242.1
Q ss_pred CCCCCCcHHHHHHHHHHhc-----CCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHh
Q 000384 41 SINFIPRIYQLKVFEVAKR-----RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRV 115 (1590)
Q Consensus 41 ~~~~~pR~yQ~e~le~~~~-----~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~ 115 (1590)
-..=++++||...+++... =|.|++.+||.|||...+.+|..+++.....+| -+|+||+..|++ |..+|..
T Consensus 390 l~GG~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP---~LvivPlstL~N-W~~Ef~k 465 (1157)
T KOG0386|consen 390 LQGGELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGP---FLIIVPLSTLVN-WSSEFPK 465 (1157)
T ss_pred hcCCCCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcccCCC---eEEeccccccCC-chhhccc
Confidence 3445899999999999862 578999999999999999999998873333333 699999999977 8899988
Q ss_pred hc-CCceEEEecCCCCCccchHHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCCCcHHHHHHHHH
Q 000384 116 HT-DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFY 194 (1590)
Q Consensus 116 ~~-~~~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~~~~~~im~~~~ 194 (1590)
|. .+..+.|.|...... .-.-.....+++|+++|++.+.+ ....+.--+|..+|+||.|+++..+ +++-.. +
T Consensus 466 WaPSv~~i~YkGtp~~R~--~l~~qir~gKFnVLlTtyEyiik--dk~lLsKI~W~yMIIDEGHRmKNa~--~KLt~~-L 538 (1157)
T KOG0386|consen 466 WAPSVQKIQYKGTPQQRS--GLTKQQRHGKFNVLLTTYEYIIK--DKALLSKISWKYMIIDEGHRMKNAI--CKLTDT-L 538 (1157)
T ss_pred cccceeeeeeeCCHHHHh--hHHHHHhcccceeeeeeHHHhcC--CHHHHhccCCcceeecccccccchh--hHHHHH-h
Confidence 86 577777887543221 11112223689999999998865 3334444568899999999997532 222221 1
Q ss_pred hcCCCCCcEEEEeccCCccCCCCChhcHHHHHHHHHhhcCCeeEeec-chhhhhhcccCcceeeEeccCCCCcccchhhh
Q 000384 195 HKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIE-DKTEMEVFVPSAKESCRFYDQSKFCGSDLKGK 273 (1590)
Q Consensus 195 ~~~~~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~~~~-~~~~l~~~~~~p~~~~~~y~~~~~~~~~l~~~ 273 (1590)
......+++|+||+||.+++ +.+|..+|+-..-.+- ....+..++..|-...- +........-.-.
T Consensus 539 ~t~y~~q~RLLLTGTPLQN~-----------LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantG--ek~eLteEEtlLI 605 (1157)
T KOG0386|consen 539 NTHYRAQRRLLLTGTPLQNN-----------LPELWALLNFLLPNIFNSCKAFEQWFNQPFANTG--EKVELTEEETLLI 605 (1157)
T ss_pred hccccchhhhhhcCChhhhc-----------cHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcC--CcccccchHHHHH
Confidence 12335689999999999987 3444444432111111 11223333333211000 0000000000000
Q ss_pred HHHhhhhhhhhHH-HHHhhhhhhhccchhhHHHHHHHHHHHHHHHH-HHHHHhhhhHHHHHHHHHHHHhHhHHHHHHHHh
Q 000384 274 LEVSWSKFDASLS-KLQGSQLNCYKDMDDKHKTLRKQLSDYHAKIL-YCLDELGLICAYEAVKICLEKVLKAQEECEIYR 351 (1590)
Q Consensus 274 ~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~ 351 (1590)
+.....-+-+++. .+..+... .+++++....+--.....++. .....-|....+ . ....
T Consensus 606 IrRLHkVLRPFlLRRlKkeVE~---~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d---------------~-~~g~ 666 (1157)
T KOG0386|consen 606 IRRLHKVLRPFLLRRLKKEVEQ---ELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKD---------------T-AKGK 666 (1157)
T ss_pred HHHHHHhhhHHHHHhhhHHHhh---hCchhhhHhhheehhhhhHhhhHHHHhCCCCCcC---------------c-hhcc
Confidence 1111111111111 11111111 111221111000000000000 000000100000 0 0000
Q ss_pred hhhHHHHHHHHHHHHHHhhhcCcchhh--hccccCCccccccCCCCCHHHHHHHHHHHhcCCCCCcEEEEEEehHHHHHH
Q 000384 352 QSSLQCKYFLEEVLHVIGSALPLADKI--FLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKV 429 (1590)
Q Consensus 352 ~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~ta~~ 429 (1590)
.........+-.+.+.++ ...-+ +...-.......+.-..+.|+..|-.+|..+. ..+++++.|++.......
T Consensus 667 ~g~k~L~N~imqLRKiCN----HP~lf~~ve~~~~~~~~~~dL~R~sGKfELLDRiLPKLk-atgHRVLlF~qMTrlmdi 741 (1157)
T KOG0386|consen 667 KGYKPLFNTIMQLRKLCN----HPYLFANVENSYTLHYDIKDLVRVSGKFELLDRILPKLK-ATGHRVLLFSQMTRLMDI 741 (1157)
T ss_pred ccchhhhhHhHHHHHhcC----CchhhhhhccccccccChhHHHHhccHHHHHHhhhHHHH-hcCcchhhHHHHHHHHHH
Confidence 000000011111111111 00000 00000000000122235889999999988776 568899999999998899
Q ss_pred HHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCC---ceEEEEcccccccccCCCccEEEEccCCCCHH
Q 000384 430 VERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGK---VNLLFATDVIEEGMHVPNCSYVIRFDLPKTVS 506 (1590)
Q Consensus 430 L~~~L~~~~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~---~~vLVaT~vleeGIDip~~~~VI~fD~p~s~~ 506 (1590)
+..+|.- .+++...+.|. ...++|-..++.|..-. ..+|.+|.+++.|+|++.++.||.||..||+.
T Consensus 742 mEdyL~~----~~~kYlRLDG~------TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtviifdsdwnp~ 811 (1157)
T KOG0386|consen 742 LEDYLQI----REYKYLRLDGQ------TKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPH 811 (1157)
T ss_pred HHHHHhh----hhhheeeecCC------cchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEEecCCCCch
Confidence 9988875 67888889998 57889999999998653 56899999999999999999999999999999
Q ss_pred HHHHHhccccccCce
Q 000384 507 SYIQSRGRARQHNSQ 521 (1590)
Q Consensus 507 ~yiQr~GRA~R~gs~ 521 (1590)
.+.|+..||+|.|++
T Consensus 812 ~d~qaqdrahrigq~ 826 (1157)
T KOG0386|consen 812 QDLQAQDRAHRIGQK 826 (1157)
T ss_pred hHHHHHHHHHHhhch
Confidence 999999999999986
|
|
| >KOG0353 consensus ATP-dependent DNA helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.2e-19 Score=196.05 Aligned_cols=294 Identities=18% Similarity=0.278 Sum_probs=198.3
Q ss_pred CCcHHHHHHHHHHh-cCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhhcCCceEE
Q 000384 45 IPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEE 123 (1590)
Q Consensus 45 ~pR~yQ~e~le~~~-~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~~~~v~~ 123 (1590)
..||.|.++++..+ ++++++.+|||-||++++.++..- ..+.+|+++|...|++.|.-.+++ +|+....
T Consensus 94 kfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~---------adg~alvi~plislmedqil~lkq-lgi~as~ 163 (695)
T KOG0353|consen 94 KFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALC---------ADGFALVICPLISLMEDQILQLKQ-LGIDASM 163 (695)
T ss_pred hcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHh---------cCCceEeechhHHHHHHHHHHHHH-hCcchhh
Confidence 46999999999887 689999999999999999987543 234589999999999999888875 4776666
Q ss_pred EecCCCCCccchHHHHH-h----cCCCcEEEEcHHHHHHH------HHhcCcCccceeEEEEeccccccCC-CcHHHHHH
Q 000384 124 YYGAKGVDEWDSQCWQK-E----INKNDVLVMTPQILLDA------LRKAFLSLDIVCFIVIDECHHATGN-HPYTKIMK 191 (1590)
Q Consensus 124 ~~G~~~~d~~~~~~w~~-~----~~~~~VlV~T~q~L~~~------l~~~~~~l~~i~lII~DEaH~~~~~-~~~~~im~ 191 (1590)
+..+.+... ..|-. . -.....+..||+.+... |.. .+....+.+|-+||+|++..+ |.|+.-.+
T Consensus 164 lnansske~---~k~v~~~i~nkdse~kliyvtpekiaksk~~mnklek-a~~~~~~~~iaidevhccsqwghdfr~dy~ 239 (695)
T KOG0353|consen 164 LNANSSKEE---AKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEK-ALEAGFFKLIAIDEVHCCSQWGHDFRPDYK 239 (695)
T ss_pred ccCcccHHH---HHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHH-HhhcceeEEEeecceeehhhhCcccCcchH
Confidence 655443322 12221 1 13568999999987432 222 234566889999999999876 55443322
Q ss_pred HH--HhcCCCCCcEEEEeccCCccCCCCChhcHHHHHHHHHhhcCCeeEeecchhhhhhcccCcceeeEeccCCCCcccc
Q 000384 192 EF--YHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSD 269 (1590)
Q Consensus 192 ~~--~~~~~~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~~~~~~~~l~~~~~~p~~~~~~y~~~~~~~~~ 269 (1590)
.+ +...-+...++|||||....- .+....+--+|..+ .++ .-+++|. .+|...+-+
T Consensus 240 ~l~ilkrqf~~~~iigltatatn~v-----l~d~k~il~ie~~~---tf~--------a~fnr~n---l~yev~qkp--- 297 (695)
T KOG0353|consen 240 ALGILKRQFKGAPIIGLTATATNHV-----LDDAKDILCIEAAF---TFR--------AGFNRPN---LKYEVRQKP--- 297 (695)
T ss_pred HHHHHHHhCCCCceeeeehhhhcch-----hhHHHHHHhHHhhh---eee--------cccCCCC---ceeEeeeCC---
Confidence 11 112234577999999965431 11111122222211 011 0111111 112110000
Q ss_pred hhhhHHHhhhhhhhhHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHhHHHHHHH
Q 000384 270 LKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEI 349 (1590)
Q Consensus 270 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~ 349 (1590)
T Consensus 298 -------------------------------------------------------------------------------- 297 (695)
T KOG0353|consen 298 -------------------------------------------------------------------------------- 297 (695)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhhhHHHHHHHHHHHHHHhhhcCcchhhhccccCCccccccCCCCCHHHHHHHHHHH-hcCCCCCcEEEEEEehHHHHH
Q 000384 350 YRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFL-SFGKSTQVLCIIFVERIIAAK 428 (1590)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~-~~~~~~~~k~IIFv~~r~ta~ 428 (1590)
+....-.+.+.+++. .| .+..+||||-++..++
T Consensus 298 -------------------------------------------~n~dd~~edi~k~i~~~f---~gqsgiiyc~sq~d~e 331 (695)
T KOG0353|consen 298 -------------------------------------------GNEDDCIEDIAKLIKGDF---AGQSGIIYCFSQKDCE 331 (695)
T ss_pred -------------------------------------------CChHHHHHHHHHHhcccc---CCCcceEEEeccccHH
Confidence 000011111122221 12 3557899999999999
Q ss_pred HHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCceEEEEcccccccccCCCccEEEEccCCCCHHHH
Q 000384 429 VVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSY 508 (1590)
Q Consensus 429 ~L~~~L~~~~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fD~p~s~~~y 508 (1590)
.+...|+.+ ++....+|.. |.+.++.-+-+.+..|+++|+|||-+.+.|||-|++..||+-.+|.+...|
T Consensus 332 kva~alkn~----gi~a~~yha~------lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvihhsl~ksieny 401 (695)
T KOG0353|consen 332 KVAKALKNH----GIHAGAYHAN------LEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHHSLPKSIENY 401 (695)
T ss_pred HHHHHHHhc----Cccccccccc------cCccccccccccccccceEEEEEEeeecccCCCCCeeEEEecccchhHHHH
Confidence 999999984 7778888887 899999999999999999999999999999999999999999999999999
Q ss_pred HH
Q 000384 509 IQ 510 (1590)
Q Consensus 509 iQ 510 (1590)
.|
T Consensus 402 yq 403 (695)
T KOG0353|consen 402 YQ 403 (695)
T ss_pred HH
Confidence 99
|
|
| >PF00636 Ribonuclease_3: Ribonuclease III domain; InterPro: IPR000999 Prokaryotic ribonuclease III (3 | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.4e-21 Score=191.45 Aligned_cols=114 Identities=41% Similarity=0.612 Sum_probs=91.4
Q ss_pred chhhhhhhhhHhHHHHHHHHhhCCCCCcchhHHHHHHhhchHHHHHHHHhCCCccccccccCCCCcccCCCccCCCCCCC
Q 000384 1064 ERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPC 1143 (1590)
Q Consensus 1064 ErLE~LGDs~Lk~~~s~~l~~~~p~~~eg~ls~~r~~~v~N~~L~~~a~~~gl~~~i~~~~f~~~~w~pp~~~~~~~~~~ 1143 (1590)
||||||||+||+++++.+||.+||+++||.||.+|+.+|||.+|+++|.++||+.||+..+|+...|.+|.......
T Consensus 1 ErLefLGDavL~~~v~~~l~~~~p~~~~~~L~~~r~~~vsn~~L~~~a~~~gl~~~l~~~~~~~~~~~~~~~~~~~~--- 77 (114)
T PF00636_consen 1 ERLEFLGDAVLKLLVSEYLFEKYPNLNEGQLTKLRSALVSNKFLARLAVKLGLHKYLRQEPFEIQRWIKPFNEDLNN--- 77 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTSSHHHHHHHHHHHHSHHHHHHHHHHTTHGCTCBHHHHHHHHHHHCHHCC------
T ss_pred CcHhHhHHHHHHHHHHHHHHHHCCCCChhHHHHHHHHHhCHHHHHHHHHHhCchHhhhccchhHHHHHHHHHHHHHh---
Confidence 89999999999999999999999999999999999999999999999999999999999999988777661110000
Q ss_pred CCCCCcccccCCCcccccccceecCCcCCCCccccccchhhhHHHHHHHHhhhccC
Q 000384 1144 ECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGG 1199 (1590)
Q Consensus 1144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~iAD~vEAliGA~~~~~G 1199 (1590)
. ++ .. ........+....|++||+|||+|||+|+|+|
T Consensus 78 ~----------~~-------~~--~~~~~~~~~~~~~k~laD~~EAliGAiyld~G 114 (114)
T PF00636_consen 78 G----------DS-------ES--SISYDPKNQVLPPKVLADVFEALIGAIYLDSG 114 (114)
T ss_dssp ---------------------C---SSS--SSSSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred c----------cc-------cc--ccCCCccccCCccHHHHHHHHHHHHHHHHhcC
Confidence 0 00 00 00001114557899999999999999999998
|
1.26.3 from EC) (gene rnc) [] is an enzyme that digests double-stranded RNA. It is involved in the processing of ribosomal RNA precursors and of some mRNAs. RNase III is evolutionary related to a number of proteins including []: Saccharomyces cerevisiae (Baker's yeast) protein pac1, a ribonuclease that probably inhibits mating and meiosis by degrading a specific mRNA required for sexual development yeast ribonuclease III (gene RNT1), a dsRNA-specific nuclease that cleaves eukaryotic preribosomal RNA at various sites Caenorhabditis elegans hypothetical protein F26E4.13 Paramecium bursaria Chlorella virus 1 (PBCV-1) 1 protein A464R Synechocystis sp. (strain PCC 6803) hypothetical protein slr0346 yeast hypothetical protein SpAC8A4.08c, a protein with a N-terminal helicase domain and a C-terminal RNase III domain C. elegans hypothetical protein K12H4.8, a protein with the same structure as SpAC8A4.08c ; GO: 0003723 RNA binding, 0004525 ribonuclease III activity, 0006396 RNA processing; PDB: 2GSL_A 2NUE_B 1YYO_A 2NUF_A 1YZ9_A 1JFZ_A 1YYW_C 1RC5_B 1YYK_B 1RC7_A .... |
| >COG4889 Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-19 Score=215.91 Aligned_cols=170 Identities=22% Similarity=0.237 Sum_probs=119.3
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHhc-----CCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHH
Q 000384 36 SSSTNSINFIPRIYQLKVFEVAKR-----RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQY 110 (1590)
Q Consensus 36 ~~~~~~~~~~pR~yQ~e~le~~~~-----~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~ 110 (1590)
...+......|||||++++++++. .+.=+.|.+|+|||+.++-+...+.. .++|||||+.+|..|..
T Consensus 152 ~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkisEala~--------~~iL~LvPSIsLLsQTl 223 (1518)
T COG4889 152 DNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKISEALAA--------ARILFLVPSISLLSQTL 223 (1518)
T ss_pred cccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHHHHHhh--------hheEeecchHHHHHHHH
Confidence 345556788999999999999973 45677899999999999987766533 56999999999999999
Q ss_pred HHHHhh--cCCceEEEecCCCCCccc-------------------hHHHHHh--cCCCcEEEEcHHHHHHHHHhcCcCcc
Q 000384 111 DVIRVH--TDFEVEEYYGAKGVDEWD-------------------SQCWQKE--INKNDVLVMTPQILLDALRKAFLSLD 167 (1590)
Q Consensus 111 ~~i~~~--~~~~v~~~~G~~~~d~~~-------------------~~~w~~~--~~~~~VlV~T~q~L~~~l~~~~~~l~ 167 (1590)
++.... +++....+|++..+..-. .+.|... -.+--|+++|+|.+...-.....-+.
T Consensus 224 rew~~~~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe~G~~ 303 (1518)
T COG4889 224 REWTAQKELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQEAGLD 303 (1518)
T ss_pred HHHhhccCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHHHcCCC
Confidence 888775 467777788765433210 0112211 12456999999999877655555678
Q ss_pred ceeEEEEeccccccCCCcHHHHHHHHHhcCC----CCCcEEEEeccCCcc
Q 000384 168 IVCFIVIDECHHATGNHPYTKIMKEFYHKSD----NKPKVFGMTASPVVR 213 (1590)
Q Consensus 168 ~i~lII~DEaH~~~~~~~~~~im~~~~~~~~----~~priLgLTATP~~~ 213 (1590)
.++|||+||||+..+-+--..--..|-..+. ...++|-|||||-.-
T Consensus 304 ~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy 353 (1518)
T COG4889 304 EFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIY 353 (1518)
T ss_pred CccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhh
Confidence 8999999999998865322111111211111 236789999999754
|
|
| >COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.9e-18 Score=183.79 Aligned_cols=296 Identities=21% Similarity=0.253 Sum_probs=195.3
Q ss_pred CCCCcHHHHHHHHHHh-----cCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhhc
Q 000384 43 NFIPRIYQLKVFEVAK-----RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT 117 (1590)
Q Consensus 43 ~~~pR~yQ~e~le~~~-----~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~ 117 (1590)
.=++.++|..+-+.+. ++.+||.+-||+|||-+..-.|...+. .+.+|.+..|.+..|-..+..+++.+
T Consensus 95 ~G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~------~G~~vciASPRvDVclEl~~Rlk~aF 168 (441)
T COG4098 95 KGTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALN------QGGRVCIASPRVDVCLELYPRLKQAF 168 (441)
T ss_pred ccccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHh------cCCeEEEecCcccchHHHHHHHHHhh
Confidence 3468899998776654 489999999999999876666666554 45668999999999999999999876
Q ss_pred C-CceEEEecCCCCCccchHHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCCCcHHHHHHHHHh-
Q 000384 118 D-FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYH- 195 (1590)
Q Consensus 118 ~-~~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~~~~~~im~~~~~- 195 (1590)
. ..+..++|+...- + ...++|+|...|++..+ .++++|+||++.. ||..--...|.
T Consensus 169 ~~~~I~~Lyg~S~~~----------f-r~plvVaTtHQLlrFk~-------aFD~liIDEVDAF----P~~~d~~L~~Av 226 (441)
T COG4098 169 SNCDIDLLYGDSDSY----------F-RAPLVVATTHQLLRFKQ-------AFDLLIIDEVDAF----PFSDDQSLQYAV 226 (441)
T ss_pred ccCCeeeEecCCchh----------c-cccEEEEehHHHHHHHh-------hccEEEEeccccc----cccCCHHHHHHH
Confidence 4 8899999975422 2 36788888877777543 5899999999977 33221111111
Q ss_pred --cCCCCCcEEEEeccCCccCCCCChhcHHHHHHHHHhhc-CCeeEeecchhhhhhcccCcceeeEeccCCCCcccchhh
Q 000384 196 --KSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTL-DSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKG 272 (1590)
Q Consensus 196 --~~~~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l-~~~i~~~~~~~~l~~~~~~p~~~~~~y~~~~~~~~~l~~ 272 (1590)
..+..--.+.|||||.. +|++.+ ........ -| ..|...+.+-.
T Consensus 227 ~~ark~~g~~IylTATp~k---------------~l~r~~~~g~~~~~k----------lp----~RfH~~pLpvP---- 273 (441)
T COG4098 227 KKARKKEGATIYLTATPTK---------------KLERKILKGNLRILK----------LP----ARFHGKPLPVP---- 273 (441)
T ss_pred HHhhcccCceEEEecCChH---------------HHHHHhhhCCeeEee----------cc----hhhcCCCCCCC----
Confidence 12334567899999962 333221 11111000 00 00111000000
Q ss_pred hHHHhhhhhhhhHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHhHHHHHHHHhh
Q 000384 273 KLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQ 352 (1590)
Q Consensus 273 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~ 352 (1590)
+|. -.|.|.
T Consensus 274 ----------------------kf~-------------------------w~~~~~------------------------ 282 (441)
T COG4098 274 ----------------------KFV-------------------------WIGNWN------------------------ 282 (441)
T ss_pred ----------------------ceE-------------------------EeccHH------------------------
Confidence 000 000000
Q ss_pred hhHHHHHHHHHHHHHHhhhcCcchhhhccccCCccccccCCCCCHHHHHHHHHHHhcCCCCCcEEEEEEehHHHHHHHHH
Q 000384 353 SSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVER 432 (1590)
Q Consensus 353 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~ta~~L~~ 432 (1590)
+ .+..+.+++|+...++ ... ..+..++||+++..+.+.++.
T Consensus 283 -------------k----------------------~l~r~kl~~kl~~~le---kq~-~~~~P~liF~p~I~~~eq~a~ 323 (441)
T COG4098 283 -------------K----------------------KLQRNKLPLKLKRWLE---KQR-KTGRPVLIFFPEIETMEQVAA 323 (441)
T ss_pred -------------H----------------------HhhhccCCHHHHHHHH---HHH-hcCCcEEEEecchHHHHHHHH
Confidence 0 0001112344433332 222 345679999999999999999
Q ss_pred HHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCceEEEEcccccccccCCCccEEEEccC--CCCHHHHHH
Q 000384 433 FVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDL--PKTVSSYIQ 510 (1590)
Q Consensus 433 ~L~~~~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fD~--p~s~~~yiQ 510 (1590)
.|+.. +....++++|+. ...|.+.+++||+|++.+||+|.++|+|+.+|+++++|.=.. -.|-.+++|
T Consensus 324 ~lk~~--~~~~~i~~Vhs~--------d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQ 393 (441)
T COG4098 324 ALKKK--LPKETIASVHSE--------DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVFTESALVQ 393 (441)
T ss_pred HHHhh--CCccceeeeecc--------CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcccccHHHHHH
Confidence 99552 355677888875 367889999999999999999999999999999998776443 368889999
Q ss_pred HhccccccC
Q 000384 511 SRGRARQHN 519 (1590)
Q Consensus 511 r~GRA~R~g 519 (1590)
..||+||.-
T Consensus 394 IaGRvGRs~ 402 (441)
T COG4098 394 IAGRVGRSL 402 (441)
T ss_pred HhhhccCCC
Confidence 999999954
|
|
| >KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.2e-18 Score=210.08 Aligned_cols=187 Identities=19% Similarity=0.266 Sum_probs=137.3
Q ss_pred CCcHHHHHHHHHHh-----cCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhhc-C
Q 000384 45 IPRIYQLKVFEVAK-----RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT-D 118 (1590)
Q Consensus 45 ~pR~yQ~e~le~~~-----~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~-~ 118 (1590)
++|+||...++++. +-|.|+++++|.|||...|.++.++......+++ =||+|||..+.+ |.-+|++|+ +
T Consensus 615 qLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQtISllAhLACeegnWGP---HLIVVpTsviLn-WEMElKRwcPg 690 (1958)
T KOG0391|consen 615 QLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQTISLLAHLACEEGNWGP---HLIVVPTSVILN-WEMELKRWCPG 690 (1958)
T ss_pred HHHHHHHhhHHHHHHHHHhcccceehhhhcccchhHHHHHHHHHHhcccCCCC---ceEEeechhhhh-hhHHHhhhCCc
Confidence 58999999999874 4689999999999999999999998763333444 488999977765 999999998 7
Q ss_pred CceEEEecCCCCCccchHHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCCC--cHHHHHHHHHhc
Q 000384 119 FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNH--PYTKIMKEFYHK 196 (1590)
Q Consensus 119 ~~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~~--~~~~im~~~~~~ 196 (1590)
+++..|+|......-.++.|.+ -+.++|.|++|..+...++. ++-.+|.++|+||||++++.. .|..++. |
T Consensus 691 lKILTYyGs~kErkeKRqgW~k-PnaFHVCItSYklv~qd~~A--FkrkrWqyLvLDEaqnIKnfksqrWQAlln-f--- 763 (1958)
T KOG0391|consen 691 LKILTYYGSHKERKEKRQGWAK-PNAFHVCITSYKLVFQDLTA--FKRKRWQYLVLDEAQNIKNFKSQRWQALLN-F--- 763 (1958)
T ss_pred ceEeeecCCHHHHHHHhhcccC-CCeeEEeehhhHHHHhHHHH--HHhhccceeehhhhhhhcchhHHHHHHHhc-c---
Confidence 9999999987554434445653 34679999999998776543 456789999999999998652 2443333 1
Q ss_pred CCCCCcEEEEeccCCccCCCCChhcHHHHHHHHHhhcCCeeE-eecchhhhhhcccCcce
Q 000384 197 SDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVF-TIEDKTEMEVFVPSAKE 255 (1590)
Q Consensus 197 ~~~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~-~~~~~~~l~~~~~~p~~ 255 (1590)
+.-|+|+||+||.+|+ +.+|.++|+-..- +..+......++.+|-.
T Consensus 764 --nsqrRLLLtgTPLqNs-----------lmELWSLmhFLmP~~f~shd~fk~wfsnPlt 810 (1958)
T KOG0391|consen 764 --NSQRRLLLTGTPLQNS-----------LMELWSLMHFLMPQTFASHDIFKPWFSNPLT 810 (1958)
T ss_pred --chhheeeecCCchhhH-----------HHHHHHHHHHhhchhhhhhhhHHHHhcCcch
Confidence 4578899999999876 5556665543221 22344555566666543
|
|
| >KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.6e-19 Score=213.81 Aligned_cols=152 Identities=19% Similarity=0.201 Sum_probs=120.6
Q ss_pred CCCCCcHHHHHHHHHHh-cCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhhcCCc
Q 000384 42 INFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFE 120 (1590)
Q Consensus 42 ~~~~pR~yQ~e~le~~~-~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~~~~ 120 (1590)
..|+|-.+|.+++.... +..+.|+++|.+|||++|-.+|.-. + ....++++..|-++|.+|-++.|+..+| .
T Consensus 294 ~pFelD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAiala-q-----~h~TR~iYTSPIKALSNQKfRDFk~tF~-D 366 (1248)
T KOG0947|consen 294 YPFELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALA-Q-----KHMTRTIYTSPIKALSNQKFRDFKETFG-D 366 (1248)
T ss_pred CCCCccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHH-H-----hhccceEecchhhhhccchHHHHHHhcc-c
Confidence 46899999999999886 5789999999999999998866432 1 2345699999999999999999998876 4
Q ss_pred eEEEecCCCCCccchHHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCCCcHHHHHHHHHhcCCCC
Q 000384 121 VEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK 200 (1590)
Q Consensus 121 v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~~~~~~im~~~~~~~~~~ 200 (1590)
|++++|+..+.. .+.++|||.++|.++|-+|---+.++.+|||||+|-+.+... .-+..+.....+..
T Consensus 367 vgLlTGDvqinP-----------eAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eR-GvVWEEViIMlP~H 434 (1248)
T KOG0947|consen 367 VGLLTGDVQINP-----------EASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVER-GVVWEEVIIMLPRH 434 (1248)
T ss_pred cceeecceeeCC-----------CcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccc-cccceeeeeecccc
Confidence 558999887664 789999999999999999877789999999999998864321 11112222234666
Q ss_pred CcEEEEeccCCc
Q 000384 201 PKVFGMTASPVV 212 (1590)
Q Consensus 201 priLgLTATP~~ 212 (1590)
..++.||||.-+
T Consensus 435 V~~IlLSATVPN 446 (1248)
T KOG0947|consen 435 VNFILLSATVPN 446 (1248)
T ss_pred ceEEEEeccCCC
Confidence 888999999654
|
|
| >KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.6e-19 Score=217.97 Aligned_cols=162 Identities=25% Similarity=0.312 Sum_probs=117.7
Q ss_pred CCCcHHHHHHHHHHhc--CCEEEEeCCCChHHHHHHHHHHHHHHHHHh-----CCCCeEEEEEecChhhHHHHHHHHHhh
Q 000384 44 FIPRIYQLKVFEVAKR--RNTIAVLETGAGKTMIAVMLIKDIAQAIKS-----NGFKKLIIFLAPTVHLVHQQYDVIRVH 116 (1590)
Q Consensus 44 ~~pR~yQ~e~le~~~~--~n~Ii~~~TGsGKTliailli~~~l~~~~~-----~~~~~~vl~LvPt~~Lv~Qq~~~i~~~ 116 (1590)
-.+...|-.+...+++ .|+++|+|||+|||-+|++-|.+.+..... .....++++++|.++||..|...|.+.
T Consensus 308 ~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkR 387 (1674)
T KOG0951|consen 308 QSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSKR 387 (1674)
T ss_pred hhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHHhh
Confidence 3488999999999984 899999999999999999977665542211 122346999999999999999999886
Q ss_pred ---cCCceEEEecCCCCCccchHHHHHhcCCCcEEEEcHHHHHHHHHhcC--cCccceeEEEEeccccccCC-Cc-HHHH
Q 000384 117 ---TDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAF--LSLDIVCFIVIDECHHATGN-HP-YTKI 189 (1590)
Q Consensus 117 ---~~~~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~~~--~~l~~i~lII~DEaH~~~~~-~~-~~~i 189 (1590)
+|++|...+|+.... ...+...+|+|+||+...-.-+.+. --.+-++++|+||.|...++ .| -..|
T Consensus 388 la~~GI~V~ElTgD~~l~-------~~qieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhDdRGpvLESI 460 (1674)
T KOG0951|consen 388 LAPLGITVLELTGDSQLG-------KEQIEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHDDRGPVLESI 460 (1674)
T ss_pred ccccCcEEEEecccccch-------hhhhhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcccccchHHHHH
Confidence 489999999986543 3456689999999999744433321 11234789999999998543 22 2233
Q ss_pred HHHHHhc---CCCCCcEEEEeccCCc
Q 000384 190 MKEFYHK---SDNKPKVFGMTASPVV 212 (1590)
Q Consensus 190 m~~~~~~---~~~~priLgLTATP~~ 212 (1590)
..+.... ....+|++|||||.-+
T Consensus 461 VaRt~r~ses~~e~~RlVGLSATLPN 486 (1674)
T KOG0951|consen 461 VARTFRRSESTEEGSRLVGLSATLPN 486 (1674)
T ss_pred HHHHHHHhhhcccCceeeeecccCCc
Confidence 3333322 3467999999999653
|
|
| >KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.5e-17 Score=187.87 Aligned_cols=117 Identities=16% Similarity=0.220 Sum_probs=101.4
Q ss_pred CCHHHHHHHHHHHhcC-CCCCcEEEEEEehHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCC
Q 000384 395 ISTKLHELLQLFLSFG-KSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGG 473 (1590)
Q Consensus 395 ~s~K~~~L~~lL~~~~-~~~~~k~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g 473 (1590)
.|.|+++|.+-|.-.. .....+.|||.+.....+.+.-.|.+ .|+.+.-+.|+ |++..|...++.|++.
T Consensus 618 sSTKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~k----aGfscVkL~Gs------Ms~~ardatik~F~nd 687 (791)
T KOG1002|consen 618 SSTKIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGK----AGFSCVKLVGS------MSPAARDATIKYFKND 687 (791)
T ss_pred chhHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhc----cCceEEEeccC------CChHHHHHHHHHhccC
Confidence 4789999988654322 13456889999999999999888888 68999999998 9999999999999986
Q ss_pred C-ce-EEEEcccccccccCCCccEEEEccCCCCHHHHHHHhccccccCce
Q 000384 474 K-VN-LLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQ 521 (1590)
Q Consensus 474 ~-~~-vLVaT~vleeGIDip~~~~VI~fD~p~s~~~yiQr~GRA~R~gs~ 521 (1590)
- |. +|++-.+++..+|+..+..|+.+|+.||+.--.|...|.+|.|+.
T Consensus 688 ~~c~vfLvSLkAGGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~ 737 (791)
T KOG1002|consen 688 IDCRVFLVSLKAGGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQY 737 (791)
T ss_pred CCeEEEEEEeccCceEeeechhceeEeecccccHHHHhhhhhhHHhhcCc
Confidence 4 44 577778999999999999999999999999999999999999986
|
|
| >COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.2e-17 Score=209.44 Aligned_cols=331 Identities=21% Similarity=0.236 Sum_probs=225.1
Q ss_pred CCCCcHHHHHHHHHHhc-CCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhhcCCce
Q 000384 43 NFIPRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEV 121 (1590)
Q Consensus 43 ~~~pR~yQ~e~le~~~~-~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~~~~v 121 (1590)
...-..+..++++.+.+ +-+||+++||||||..--..+.+... +..+.+.++-|.+.-+...++.+...++-++
T Consensus 48 ~LPv~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~-----~~~g~I~~tQPRRlAArsvA~RvAeel~~~~ 122 (845)
T COG1643 48 GLPVTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL-----GIAGKIGCTQPRRLAARSVAERVAEELGEKL 122 (845)
T ss_pred cCCcHHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc-----ccCCeEEecCchHHHHHHHHHHHHHHhCCCc
Confidence 34446677777777764 66789999999999876665555422 3456789999999888888999988888877
Q ss_pred EEEecCCCCCccchHHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCCCcH-HHHHHHHHhcCCCC
Q 000384 122 EEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPY-TKIMKEFYHKSDNK 200 (1590)
Q Consensus 122 ~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~~~~-~~im~~~~~~~~~~ 200 (1590)
+..+|-.-. |+ ...-.+.+|-|||.++|++.+..... ++.+++|||||+|+-.-+..+ -.+++.........
T Consensus 123 G~~VGY~iR--fe----~~~s~~Trik~mTdGiLlrei~~D~~-Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~D 195 (845)
T COG1643 123 GETVGYSIR--FE----SKVSPRTRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDD 195 (845)
T ss_pred CceeeEEEE--ee----ccCCCCceeEEeccHHHHHHHhhCcc-cccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCC
Confidence 766652210 00 11224679999999999999987664 899999999999987644332 22334333344445
Q ss_pred CcEEEEeccCCccCCCCChhcHHHHHHHHHhhcC-CeeEeecchhhhhhcccCcceeeEeccCCCCcccchhhhHHHhhh
Q 000384 201 PKVFGMTASPVVRKGVSSAMDCEGQISELESTLD-SQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWS 279 (1590)
Q Consensus 201 priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~-~~i~~~~~~~~l~~~~~~p~~~~~~y~~~~~~~~~l~~~~~~~~~ 279 (1590)
-+++.||||... .++...++ +.+..+..+.- | .-+.|.+....
T Consensus 196 LKiIimSATld~--------------~rfs~~f~~apvi~i~GR~f-------P--Vei~Y~~~~~~------------- 239 (845)
T COG1643 196 LKLIIMSATLDA--------------ERFSAYFGNAPVIEIEGRTY-------P--VEIRYLPEAEA------------- 239 (845)
T ss_pred ceEEEEecccCH--------------HHHHHHcCCCCEEEecCCcc-------c--eEEEecCCCCc-------------
Confidence 799999999642 34444454 44444432210 1 11223211100
Q ss_pred hhhhhHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHhHHHHHHHHhhhhHHHHH
Q 000384 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKY 359 (1590)
Q Consensus 280 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (1590)
+. .
T Consensus 240 ---------------------d~-~------------------------------------------------------- 242 (845)
T COG1643 240 ---------------------DY-I------------------------------------------------------- 242 (845)
T ss_pred ---------------------ch-h-------------------------------------------------------
Confidence 00 0
Q ss_pred HHHHHHHHHhhhcCcchhhhccccCCccccccCCCCCHHHHHHHHHHHhcCCCCCcEEEEEEehHHHHHHHHHHHhhCCC
Q 000384 360 FLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPF 439 (1590)
Q Consensus 360 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~ 439 (1590)
-...+...+.....+....++||..-....+...+.|.+ ..
T Consensus 243 --------------------------------------l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~-~~ 283 (845)
T COG1643 243 --------------------------------------LLDAIVAAVDIHLREGSGSILVFLPGQREIERTAEWLEK-AE 283 (845)
T ss_pred --------------------------------------HHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHHh-cc
Confidence 000000111111112244689999999998888888887 22
Q ss_pred C-CCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCceEEEEcccccccccCCCccEEEE--------ccC---------
Q 000384 440 L-THLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIR--------FDL--------- 501 (1590)
Q Consensus 440 ~-~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~--------fD~--------- 501 (1590)
+ ..+.+..++|. |+.++|.++++.-..|..+|++||+|+|.+|.||++.+||. ||.
T Consensus 284 l~~~~~i~PLy~~------L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~ 357 (845)
T COG1643 284 LGDDLEILPLYGA------LSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLET 357 (845)
T ss_pred ccCCcEEeecccc------CCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeE
Confidence 3 46888999998 99999999998888887889999999999999999999994 553
Q ss_pred -CCCHHHHHHHhccccccCceEEEEeccchHHhhhhhhcCChhh
Q 000384 502 -PKTVSSYIQSRGRARQHNSQFILMLERSERSVTDTALSRDPEA 544 (1590)
Q Consensus 502 -p~s~~~yiQr~GRA~R~gs~~ivlv~~~E~~~~~~~~~~~~~~ 544 (1590)
|-|-.+..||.|||||-+.+.++-+..++.+. .+..+..||.
T Consensus 358 ~~ISqAsA~QRaGRAGR~~pGicyRLyse~~~~-~~~~~t~PEI 400 (845)
T COG1643 358 EPISKASADQRAGRAGRTGPGICYRLYSEEDFL-AFPEFTLPEI 400 (845)
T ss_pred EEechhhhhhhccccccCCCceEEEecCHHHHH-hcccCCChhh
Confidence 34777889999999999988777777665555 6666667775
|
|
| >KOG1817 consensus Ribonuclease [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.2e-19 Score=196.28 Aligned_cols=123 Identities=33% Similarity=0.387 Sum_probs=108.1
Q ss_pred hHHHHHhhcCCCCCC----CCCcchhhhhhhhhHhHHHHHHHHhhCCCCCcchhHHHHHHhhchHHHHHHHHhCCCcccc
Q 000384 1045 SSLILEALTTLGCCE----SFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYI 1120 (1590)
Q Consensus 1045 ~~lll~AlT~~s~~~----~~n~ErLE~LGDs~Lk~~~s~~l~~~~p~~~eg~ls~~r~~~v~N~~L~~~a~~~gl~~~i 1120 (1590)
.+++-+|+|..+... ..+||||||||||||.+++|.++|.+||..|||.||.+|+.+|||++-+++|..+|+++|+
T Consensus 289 irlla~aft~rs~~~n~Lt~gHNqRLEFLGDSilqlv~T~ily~kFPdhhEGhLSlLRssLVsNetqakva~~lgf~e~l 368 (533)
T KOG1817|consen 289 IRLLARAFTLRSIPFNHLTLGHNQRLEFLGDSILQLVMTEILYRKFPDHHEGHLSLLRSSLVSNETQAKVADDLGFHEYL 368 (533)
T ss_pred HHHHHHHhhccCCCchhhhhhhhHHHHHhHHHHHHHHHHHHHHHhCCccccchHHHHHHHHhccHHHHHHHHHhCCchhh
Confidence 688999999988752 2489999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCcccCCCccCCCCCCCCCCCCcccccCCCcccccccceecCCcCCCCccccccchhhhHHHHHHHHhhhccCh
Q 000384 1121 RDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGL 1200 (1590)
Q Consensus 1121 ~~~~f~~~~w~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~iAD~vEAliGA~~~~~G~ 1200 (1590)
.... +.+. .+.+..|.+||++||.|||.|+|+|+
T Consensus 369 i~n~-~~k~---------------------------------------------~~~lk~K~~ADlfEAfiGaLyvD~~l 402 (533)
T KOG1817|consen 369 ITNF-DLKD---------------------------------------------FQNLKLKDYADLFEAFIGALYVDKGL 402 (533)
T ss_pred hhCc-chhh---------------------------------------------hhhhhHHHHHHHHHHHHHHHhhcCCc
Confidence 9763 1111 22367899999999999999999999
Q ss_pred hHHHHHHHHhCCC
Q 000384 1201 IAALYMMKWLGID 1213 (1590)
Q Consensus 1201 ~~a~~~~~~~~~~ 1213 (1590)
+.+.+|++.+-.+
T Consensus 403 e~~~qf~~~l~~P 415 (533)
T KOG1817|consen 403 EYCRQFLRVLFFP 415 (533)
T ss_pred HHHHHHHHHHhhH
Confidence 9999999877543
|
|
| >KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.1e-17 Score=184.45 Aligned_cols=387 Identities=14% Similarity=0.094 Sum_probs=215.9
Q ss_pred CCCCcHHHHHHHHHHhc--CCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhhcCC-
Q 000384 43 NFIPRIYQLKVFEVAKR--RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDF- 119 (1590)
Q Consensus 43 ~~~pR~yQ~e~le~~~~--~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~~~- 119 (1590)
.-.+-|||.+.++.+++ ..+++++++|.|||+.|+.+...... . ...||+||. .|-.-|++.+.++++.
T Consensus 196 vs~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyra------E-wplliVcPA-svrftWa~al~r~lps~ 267 (689)
T KOG1000|consen 196 VSRLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYRA------E-WPLLIVCPA-SVRFTWAKALNRFLPSI 267 (689)
T ss_pred HHhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhh------c-CcEEEEecH-HHhHHHHHHHHHhcccc
Confidence 34578999999999974 77999999999999999987766533 2 237999998 5667899999999863
Q ss_pred -ceEEEecCCCCCccchHHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCCCcHHHHHHHHHhcCC
Q 000384 120 -EVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSD 198 (1590)
Q Consensus 120 -~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~~~~~~im~~~~~~~~ 198 (1590)
.+.++.+...... ..-....|.|++++++...-. .+.-..+.+|||||+|+++....- ..+......+
T Consensus 268 ~pi~vv~~~~D~~~-------~~~t~~~v~ivSye~ls~l~~--~l~~~~~~vvI~DEsH~Lk~sktk--r~Ka~~dllk 336 (689)
T KOG1000|consen 268 HPIFVVDKSSDPLP-------DVCTSNTVAIVSYEQLSLLHD--ILKKEKYRVVIFDESHMLKDSKTK--RTKAATDLLK 336 (689)
T ss_pred cceEEEecccCCcc-------ccccCCeEEEEEHHHHHHHHH--HHhcccceEEEEechhhhhccchh--hhhhhhhHHH
Confidence 3444444332110 111235799999999855322 333456899999999999753221 1222222234
Q ss_pred CCCcEEEEeccCCccCCCCChhcHHHHHHHHHhhcCCeeEeecchhhhhhcccCcceeeEeccCCCCcccchhhhHHHhh
Q 000384 199 NKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSW 278 (1590)
Q Consensus 199 ~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~~~~~~~~l~~~~~~p~~~~~~y~~~~~~~~~l~~~~~~~~ 278 (1590)
...|+++||+||.... +..+...|..+..++... -.+--..|. ........|+-... +-...+....
T Consensus 337 ~akhvILLSGTPavSR----P~elytqi~avd~tlfp~-----f~efa~rYC-d~k~vr~~~Dykg~---tnl~EL~~lL 403 (689)
T KOG1000|consen 337 VAKHVILLSGTPAVSR----PSELYTQIRAVDHTLFPN-----FHEFAIRYC-DGKQVRFCFDYKGC---TNLEELAALL 403 (689)
T ss_pred HhhheEEecCCcccCC----chhhhhhhhhhccccccc-----HHHHHHHhc-CccccceeeecCCC---CCHHHHHHHH
Confidence 4578999999998754 222223333333222211 111111111 11111122211110 1011111110
Q ss_pred hhhhhhHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHhHHHHHHHHhhhhHHHH
Q 000384 279 SKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCK 358 (1590)
Q Consensus 279 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (1590)
.+.. .+.++.. +.+.+++.+-.. +. -..+.--. +....+- .+...+.......+
T Consensus 404 ~k~l-MIRRlK~---dvL~qLPpKrr~-----------Vv---~~~~gr~d--a~~~~lv------~~a~~~t~~~~~e~ 457 (689)
T KOG1000|consen 404 FKRL-MIRRLKA---DVLKQLPPKRRE-----------VV---YVSGGRID--ARMDDLV------KAAADYTKVNSMER 457 (689)
T ss_pred HHHH-HHHHHHH---HHHhhCCccceE-----------EE---EEcCCccc--hHHHHHH------HHhhhcchhhhhhh
Confidence 0000 0000000 111111111000 00 00000000 0000000 00000000000000
Q ss_pred HHHHHHHHHHhhhcCcchhhhccccCCccccccCCCCCHHHHHHHHHHHh---cCCCCCcEEEEEEehHHHHHHHHHHHh
Q 000384 359 YFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLS---FGKSTQVLCIIFVERIIAAKVVERFVK 435 (1590)
Q Consensus 359 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~---~~~~~~~k~IIFv~~r~ta~~L~~~L~ 435 (1590)
... ..+-..+ ...-.|+....+.+.. +...++.|.+||+.-....+.|...+.
T Consensus 458 ~~~-~l~l~y~-----------------------~tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~ 513 (689)
T KOG1000|consen 458 KHE-SLLLFYS-----------------------LTGIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVN 513 (689)
T ss_pred hhH-HHHHHHH-----------------------HhcccccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHH
Confidence 000 0000000 0113456666665544 344667899999999999999999988
Q ss_pred hCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCC-ce-EEEEcccccccccCCCccEEEEccCCCCHHHHHHHhc
Q 000384 436 KVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGK-VN-LLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRG 513 (1590)
Q Consensus 436 ~~~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~-~~-vLVaT~vleeGIDip~~~~VI~fD~p~s~~~yiQr~G 513 (1590)
+ .++....+.|. .+..+|....+.|...+ +. -+++..+++.||++.+.++|++..++||+--++|.-.
T Consensus 514 ~----r~vg~IRIDGs------t~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAED 583 (689)
T KOG1000|consen 514 K----RKVGSIRIDGS------TPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQAED 583 (689)
T ss_pred H----cCCCeEEecCC------CCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCceEEechh
Confidence 7 67777788898 57888999999998764 43 4556788999999999999999999999999999999
Q ss_pred cccccCce
Q 000384 514 RARQHNSQ 521 (1590)
Q Consensus 514 RA~R~gs~ 521 (1590)
||+|.|++
T Consensus 584 RaHRiGQk 591 (689)
T KOG1000|consen 584 RAHRIGQK 591 (689)
T ss_pred hhhhcccc
Confidence 99999987
|
|
| >PRK13104 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.2e-16 Score=201.28 Aligned_cols=128 Identities=16% Similarity=0.177 Sum_probs=103.1
Q ss_pred CHHHHHHHHHHHhcCCCCCcEEEEEEehHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCc
Q 000384 396 STKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKV 475 (1590)
Q Consensus 396 s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~ 475 (1590)
..|...+++.+.... ..+..+||||+++..++.|+++|.+ .++....++|. +..+++..+.++|+.|.
T Consensus 427 ~~k~~av~~~i~~~~-~~g~PVLVgt~Sie~sE~ls~~L~~----~gi~h~vLnak------~~q~Ea~iia~Ag~~G~- 494 (896)
T PRK13104 427 ADKFQAIIEDVRECG-VRKQPVLVGTVSIEASEFLSQLLKK----ENIKHQVLNAK------FHEKEAQIIAEAGRPGA- 494 (896)
T ss_pred HHHHHHHHHHHHHHH-hCCCCEEEEeCcHHHHHHHHHHHHH----cCCCeEeecCC------CChHHHHHHHhCCCCCc-
Confidence 568888887775554 4567899999999999999999998 68899999998 78999999999999994
Q ss_pred eEEEEcccccccccCCC--------------------------------------ccEEEEccCCCCHHHHHHHhccccc
Q 000384 476 NLLFATDVIEEGMHVPN--------------------------------------CSYVIRFDLPKTVSSYIQSRGRARQ 517 (1590)
Q Consensus 476 ~vLVaT~vleeGIDip~--------------------------------------~~~VI~fD~p~s~~~yiQr~GRA~R 517 (1590)
|+|||+++++|+||.= -=+||--..+.|-+---|-+|||||
T Consensus 495 -VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGR 573 (896)
T PRK13104 495 -VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGR 573 (896)
T ss_pred -EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhcccccc
Confidence 9999999999999862 1267777888899999999999999
Q ss_pred cCce--EEEEeccchHHhhhh
Q 000384 518 HNSQ--FILMLERSERSVTDT 536 (1590)
Q Consensus 518 ~gs~--~ivlv~~~E~~~~~~ 536 (1590)
.|-. ..+++.-++..|+.+
T Consensus 574 QGDPGss~f~lSleD~l~~~f 594 (896)
T PRK13104 574 QGDPGSSRFYLSLEDNLMRIF 594 (896)
T ss_pred CCCCCceEEEEEcCcHHHHHh
Confidence 8842 333333344455443
|
|
| >PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases | Back alignment and domain information |
|---|
Probab=99.76 E-value=1e-17 Score=180.77 Aligned_cols=157 Identities=24% Similarity=0.358 Sum_probs=123.1
Q ss_pred cHHHHHHHHHHh-cCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhhcC---CceE
Q 000384 47 RIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTD---FEVE 122 (1590)
Q Consensus 47 R~yQ~e~le~~~-~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~~---~~v~ 122 (1590)
.|+|.++++.+. ++++++.+|||+|||++++.++...+. .+...++++++|+++|+.|+.+.++..+. .++.
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~----~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~ 76 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQ----EGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVV 76 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHH----TTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEE
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhc----cCCCceEEEEeecccccccccccccccccccccccc
Confidence 489999999887 588999999999999999998877665 22345799999999999999999999864 5888
Q ss_pred EEecCCCCCccchHHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCCCcHHHHHHHHHhcC--CCC
Q 000384 123 EYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS--DNK 200 (1590)
Q Consensus 123 ~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~~~~~~im~~~~~~~--~~~ 200 (1590)
.++|+...+.. ...| ...+++|+|+||+.|.+.+.++...+.++++|||||+|++..+ .+...+..+.... ...
T Consensus 77 ~~~~~~~~~~~-~~~~--~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~-~~~~~~~~i~~~~~~~~~ 152 (169)
T PF00270_consen 77 LLHGGQSISED-QREV--LSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDE-TFRAMLKSILRRLKRFKN 152 (169)
T ss_dssp EESTTSCHHHH-HHHH--HHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHT-THHHHHHHHHHHSHTTTT
T ss_pred ccccccccccc-cccc--ccccccccccCcchhhccccccccccccceeeccCcccccccc-cHHHHHHHHHHHhcCCCC
Confidence 88886653211 1111 2347999999999999999987667888999999999999876 4444444444433 235
Q ss_pred CcEEEEeccCC
Q 000384 201 PKVFGMTASPV 211 (1590)
Q Consensus 201 priLgLTATP~ 211 (1590)
+++++|||||.
T Consensus 153 ~~~i~~SAT~~ 163 (169)
T PF00270_consen 153 IQIILLSATLP 163 (169)
T ss_dssp SEEEEEESSST
T ss_pred CcEEEEeeCCC
Confidence 88999999986
|
Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A .... |
| >cd00268 DEADc DEAD-box helicases | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.8e-18 Score=186.64 Aligned_cols=161 Identities=23% Similarity=0.294 Sum_probs=128.6
Q ss_pred CCCcHHHHHHHHHHh-cCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhhc---CC
Q 000384 44 FIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT---DF 119 (1590)
Q Consensus 44 ~~pR~yQ~e~le~~~-~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~---~~ 119 (1590)
..|++||.++++.+. ++|+++++|||+|||+++++++.+.+.... ...+.+++|++|+++|+.|+.+.++... ++
T Consensus 20 ~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~-~~~~~~viii~p~~~L~~q~~~~~~~~~~~~~~ 98 (203)
T cd00268 20 EKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSP-KKDGPQALILAPTRELALQIAEVARKLGKHTNL 98 (203)
T ss_pred CCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhc-ccCCceEEEEcCCHHHHHHHHHHHHHHhccCCc
Confidence 358999999999987 599999999999999998887766554211 1345679999999999999999888764 67
Q ss_pred ceEEEecCCCCCccchHHHHHhc-CCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCCCcHHHHHHHHHhcCC
Q 000384 120 EVEEYYGAKGVDEWDSQCWQKEI-NKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSD 198 (1590)
Q Consensus 120 ~v~~~~G~~~~d~~~~~~w~~~~-~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~~~~~~im~~~~~~~~ 198 (1590)
.+..++|+..... +.... .+++|+|+|++.|.+.+.++...+.+++++|+||||++.+ ..+...+..+.....
T Consensus 99 ~~~~~~~~~~~~~-----~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~-~~~~~~~~~~~~~l~ 172 (203)
T cd00268 99 KVVVIYGGTSIDK-----QIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLD-MGFEDQIREILKLLP 172 (203)
T ss_pred eEEEEECCCCHHH-----HHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhc-cChHHHHHHHHHhCC
Confidence 8888888765432 22222 4789999999999999988888889999999999999874 355555665555566
Q ss_pred CCCcEEEEeccCC
Q 000384 199 NKPKVFGMTASPV 211 (1590)
Q Consensus 199 ~~priLgLTATP~ 211 (1590)
..++++++||||.
T Consensus 173 ~~~~~~~~SAT~~ 185 (203)
T cd00268 173 KDRQTLLFSATMP 185 (203)
T ss_pred cccEEEEEeccCC
Confidence 6899999999986
|
A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. |
| >PRK12906 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.4e-17 Score=203.13 Aligned_cols=128 Identities=13% Similarity=0.143 Sum_probs=107.3
Q ss_pred CHHHHHHHHHHHhcCCCCCcEEEEEEehHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCc
Q 000384 396 STKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKV 475 (1590)
Q Consensus 396 s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~ 475 (1590)
..|...+.+.+.... ..+..+||||+++..++.|++.|.+ .++....++|. +..+++..+.++++.|.
T Consensus 423 ~~K~~al~~~i~~~~-~~g~pvLI~t~si~~se~ls~~L~~----~gi~~~~Lna~------~~~~Ea~ii~~ag~~g~- 490 (796)
T PRK12906 423 DSKFNAVVKEIKERH-AKGQPVLVGTVAIESSERLSHLLDE----AGIPHAVLNAK------NHAKEAEIIMNAGQRGA- 490 (796)
T ss_pred HHHHHHHHHHHHHHH-hCCCCEEEEeCcHHHHHHHHHHHHH----CCCCeeEecCC------cHHHHHHHHHhcCCCce-
Confidence 568888888886554 3567899999999999999999998 57888999998 56777777777777776
Q ss_pred eEEEEcccccccccCC---Ccc-----EEEEccCCCCHHHHHHHhccccccCce--EEEEeccchHHhhhh
Q 000384 476 NLLFATDVIEEGMHVP---NCS-----YVIRFDLPKTVSSYIQSRGRARQHNSQ--FILMLERSERSVTDT 536 (1590)
Q Consensus 476 ~vLVaT~vleeGIDip---~~~-----~VI~fD~p~s~~~yiQr~GRA~R~gs~--~ivlv~~~E~~~~~~ 536 (1590)
|+|||+++++|+||+ ++. +||.++.|.|.+.|.|++||+||.|.. ..+++.-++..|+.+
T Consensus 491 -VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~~~~sleD~l~~~f 560 (796)
T PRK12906 491 -VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLMRRF 560 (796)
T ss_pred -EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceEEEEeccchHHHhh
Confidence 999999999999995 788 999999999999999999999999964 566666566666654
|
|
| >COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.5e-16 Score=194.94 Aligned_cols=155 Identities=19% Similarity=0.243 Sum_probs=123.5
Q ss_pred CCCCCcHHHHHHHHHHhc-----CCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhh
Q 000384 42 INFIPRIYQLKVFEVAKR-----RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVH 116 (1590)
Q Consensus 42 ~~~~pR~yQ~e~le~~~~-----~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~ 116 (1590)
....+.+-|..+++.+.. ...++.+.||||||-+++-+|...+. .++.+|||||-.+|..|..+.|+..
T Consensus 195 ~~~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~------~GkqvLvLVPEI~Ltpq~~~rf~~r 268 (730)
T COG1198 195 EWLALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLA------QGKQVLVLVPEIALTPQLLARFKAR 268 (730)
T ss_pred cccccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHH------cCCEEEEEeccccchHHHHHHHHHH
Confidence 356788999999998863 45899999999999999999999887 4567999999999999999999999
Q ss_pred cCCceEEEecCCCCCccchHHHHHhc-CCCcEEEEcHHHHHHHHHhcCcCccceeEEEEecccccc--CCC-c-HH-HHH
Q 000384 117 TDFEVEEYYGAKGVDEWDSQCWQKEI-NKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHAT--GNH-P-YT-KIM 190 (1590)
Q Consensus 117 ~~~~v~~~~G~~~~d~~~~~~w~~~~-~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~--~~~-~-~~-~im 190 (1590)
++.++.+++++.+... ..+.|.+.. ...+|+|+|-..+ |..+.++.|||+||-|... ..+ + |. +.+
T Consensus 269 Fg~~v~vlHS~Ls~~e-r~~~W~~~~~G~~~vVIGtRSAl-------F~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdv 340 (730)
T COG1198 269 FGAKVAVLHSGLSPGE-RYRVWRRARRGEARVVIGTRSAL-------FLPFKNLGLIIVDEEHDSSYKQEDGPRYHARDV 340 (730)
T ss_pred hCCChhhhcccCChHH-HHHHHHHHhcCCceEEEEechhh-------cCchhhccEEEEeccccccccCCcCCCcCHHHH
Confidence 9999999999987654 567798877 6799999998877 7789999999999999765 211 1 32 222
Q ss_pred HHHHhcCCCCCcEEEEeccCC
Q 000384 191 KEFYHKSDNKPKVFGMTASPV 211 (1590)
Q Consensus 191 ~~~~~~~~~~priLgLTATP~ 211 (1590)
.. +........+++=||||.
T Consensus 341 A~-~Ra~~~~~pvvLgSATPS 360 (730)
T COG1198 341 AV-LRAKKENAPVVLGSATPS 360 (730)
T ss_pred HH-HHHHHhCCCEEEecCCCC
Confidence 22 222233455666699996
|
|
| >KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.1e-17 Score=199.03 Aligned_cols=178 Identities=18% Similarity=0.241 Sum_probs=129.6
Q ss_pred CCCCCcHHHHHHHHHHh-cCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhhcCC-
Q 000384 42 INFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDF- 119 (1590)
Q Consensus 42 ~~~~pR~yQ~e~le~~~-~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~~~- 119 (1590)
..|.|-.||.+++...- ++..+|++||.+|||++....|...++ ....+.|++++|+++|++|....+...++.
T Consensus 508 ~dF~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLR----esD~~VVIyvaPtKaLVnQvsa~VyaRF~~~ 583 (1330)
T KOG0949|consen 508 HDFCPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLR----ESDSDVVIYVAPTKALVNQVSANVYARFDTK 583 (1330)
T ss_pred hccCCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHh----hcCCCEEEEecchHHHhhhhhHHHHHhhccC
Confidence 35999999999999885 578999999999999999999988887 456678999999999999998888776532
Q ss_pred ---ceEEEecCCCCCccchHHHHHhcCCCcEEEEcHHHHHHHHHh---cCcCccceeEEEEeccccccCC---CcHHHHH
Q 000384 120 ---EVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK---AFLSLDIVCFIVIDECHHATGN---HPYTKIM 190 (1590)
Q Consensus 120 ---~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~---~~~~l~~i~lII~DEaH~~~~~---~~~~~im 190 (1590)
.-..+.|+...+. +...| +|+|+|+-|+.+...|-. ......++..|||||+|.+... +.+.+++
T Consensus 584 t~~rg~sl~g~ltqEY-sinp~-----nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll 657 (1330)
T KOG0949|consen 584 TFLRGVSLLGDLTQEY-SINPW-----NCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLL 657 (1330)
T ss_pred ccccchhhHhhhhHHh-cCCch-----hceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHH
Confidence 2223444443221 22222 689999999999887754 3334588999999999998743 3344444
Q ss_pred HHHHhcCCCCCcEEEEeccCCccCCCCChhcHHHHHHHHHhhcCCeeEeec
Q 000384 191 KEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIE 241 (1590)
Q Consensus 191 ~~~~~~~~~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~~~~ 241 (1590)
.. ....+|+||||..+. ..+...+...++-++-.++.+.
T Consensus 658 ~l------i~CP~L~LSATigN~------~l~qkWlnq~~R~~sr~~eli~ 696 (1330)
T KOG0949|consen 658 LL------IPCPFLVLSATIGNP------NLFQKWLNQRGRAMSRNAELID 696 (1330)
T ss_pred Hh------cCCCeeEEecccCCH------HHHHHHHHHHHhhcCCCeeeee
Confidence 32 356789999997643 3456666667776665555443
|
|
| >KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.5e-16 Score=193.75 Aligned_cols=345 Identities=20% Similarity=0.196 Sum_probs=206.1
Q ss_pred CCcHHHHHHHHHHhc-CCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhhcCCceEE
Q 000384 45 IPRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEE 123 (1590)
Q Consensus 45 ~pR~yQ~e~le~~~~-~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~~~~v~~ 123 (1590)
....++.++++.+.+ +.++|.++||+|||...--+|.+... ..++...+++-.|.+--|.-.++++...-+-..+.
T Consensus 173 Pa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~---~~~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~ 249 (924)
T KOG0920|consen 173 PAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAI---ESGAACNIICTQPRRISAISVAERVAKERGESLGE 249 (924)
T ss_pred ccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHH---hcCCCCeEEecCCchHHHHHHHHHHHHHhccccCC
Confidence 335566667776654 77899999999999988887776543 12356678889999877777777766543222221
Q ss_pred EecCCCCCccchHHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCCCcHHHHHHHHHhcCCCCCcE
Q 000384 124 YYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKV 203 (1590)
Q Consensus 124 ~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~~~~~~im~~~~~~~~~~pri 203 (1590)
..|- ....-........+++||.++|++.+.. .-.+..+..||+||+|.-.-++.+-.+...-.....+.-++
T Consensus 250 ~VGY------qvrl~~~~s~~t~L~fcTtGvLLr~L~~-~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~Lkv 322 (924)
T KOG0920|consen 250 EVGY------QVRLESKRSRETRLLFCTTGVLLRRLQS-DPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLKV 322 (924)
T ss_pred eeeE------EEeeecccCCceeEEEecHHHHHHHhcc-CcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCceE
Confidence 1111 0000111223578999999999999976 45678899999999999877766665544444444577899
Q ss_pred EEEeccCCccCCCCChhcHHHHHHHHHhhc-CCeeEeecchhhhhhcccCcceeeEeccCCCCcccchhhhHHHhhhhhh
Q 000384 204 FGMTASPVVRKGVSSAMDCEGQISELESTL-DSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFD 282 (1590)
Q Consensus 204 LgLTATP~~~~~~~~~~~~~~~i~~Le~~l-~~~i~~~~~~~~l~~~~~~p~~~~~~y~~~~~~~~~l~~~~~~~~~~~~ 282 (1590)
++||||... ......+ ++.+.++..+ .|....+ .+++...+.
T Consensus 323 ILMSAT~da--------------e~fs~YF~~~pvi~i~gr---------------tfpV~~~-------fLEDil~~~- 365 (924)
T KOG0920|consen 323 ILMSATLDA--------------ELFSDYFGGCPVITIPGR---------------TFPVKEY-------FLEDILSKT- 365 (924)
T ss_pred EEeeeecch--------------HHHHHHhCCCceEeecCC---------------CcchHHH-------HHHHHHHHh-
Confidence 999999531 1111111 1111111110 0100000 001000000
Q ss_pred hhHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHhHHHHHHHHhhhhHHHHHHHH
Q 000384 283 ASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLE 362 (1590)
Q Consensus 283 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (1590)
.+........ . ..+..
T Consensus 366 -----------------------------------~~~~~~~~~~------------~---~~~~~-------------- 381 (924)
T KOG0920|consen 366 -----------------------------------GYVSEDDSAR------------S---GPERS-------------- 381 (924)
T ss_pred -----------------------------------cccccccccc------------c---ccccC--------------
Confidence 0000000000 0 00000
Q ss_pred HHHHHHhhhcCcchhhhccccCCccccccCCCCCHHHHHHHHHHHhcC-CCCCcEEEEEEehHHHHHHHHHHHhhCCCCC
Q 000384 363 EVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFG-KSTQVLCIIFVERIIAAKVVERFVKKVPFLT 441 (1590)
Q Consensus 363 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~-~~~~~k~IIFv~~r~ta~~L~~~L~~~~~~~ 441 (1590)
...... ...... .-....+.+++.... ......+|||.+.......+.+.|.....+.
T Consensus 382 --------~~~~~~----------~~~~~~---~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~ 440 (924)
T KOG0920|consen 382 --------QLRLAR----------LKLWEP---EIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFA 440 (924)
T ss_pred --------cccccc----------chhccc---cccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccc
Confidence 000000 000000 011222233333222 1335688999999999999999998654433
Q ss_pred C---eeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCceEEEEcccccccccCCCccEEE--------EccCCCCHH----
Q 000384 442 H---LTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVI--------RFDLPKTVS---- 506 (1590)
Q Consensus 442 ~---~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~~vLVaT~vleeGIDip~~~~VI--------~fD~p~s~~---- 506 (1590)
+ +.+..+|+. |+..+|+.+...--.|..+|++||+++|.+|.|++|-+|| +||+-.+..
T Consensus 441 ~~~~~~ilplHs~------~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~ 514 (924)
T KOG0920|consen 441 DSLKFAILPLHSS------IPSEEQQAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLL 514 (924)
T ss_pred cccceEEEecccc------CChHHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhhe
Confidence 3 667788888 9999999999999999999999999999999999999999 477655443
Q ss_pred ------HHHHHhccccccCceEEEEec
Q 000384 507 ------SYIQSRGRARQHNSQFILMLE 527 (1590)
Q Consensus 507 ------~yiQr~GRA~R~gs~~ivlv~ 527 (1590)
.-.||+|||||--.+.++-+.
T Consensus 515 ~wvSkAna~QR~GRAGRv~~G~cy~L~ 541 (924)
T KOG0920|consen 515 SWVSKANAKQRRGRAGRVRPGICYHLY 541 (924)
T ss_pred eeccccchHHhcccccCccCCeeEEee
Confidence 346999999997766444443
|
|
| >KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.4e-16 Score=184.76 Aligned_cols=456 Identities=16% Similarity=0.138 Sum_probs=241.7
Q ss_pred CCCCCCCCCcHHHHHHHHHHh------cCCEEEEeCCCChHHHHHHHHHHHHHHH--HH-hCCC-CeEEEEEecChhhHH
Q 000384 38 STNSINFIPRIYQLKVFEVAK------RRNTIAVLETGAGKTMIAVMLIKDIAQA--IK-SNGF-KKLIIFLAPTVHLVH 107 (1590)
Q Consensus 38 ~~~~~~~~pR~yQ~e~le~~~------~~n~Ii~~~TGsGKTliailli~~~l~~--~~-~~~~-~~~vl~LvPt~~Lv~ 107 (1590)
.+....+.+-++|..++.++. ....|+++++|.|||++-+.+|.+--.. .+ ..+. ....|||||. .|..
T Consensus 318 ~P~g~~v~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~Pa-Sli~ 396 (901)
T KOG4439|consen 318 TPDGLKVELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICPA-SLIH 396 (901)
T ss_pred CCCcceeecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCcH-HHHH
Confidence 344567889999999999875 2678999999999999777766553321 11 1111 1148999997 8899
Q ss_pred HHHHHHHhhc---CCceEEEecCCCCCccchHHHHHhcCCCcEEEEcHHHHHH----HHHhc----CcCccceeEEEEec
Q 000384 108 QQYDVIRVHT---DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLD----ALRKA----FLSLDIVCFIVIDE 176 (1590)
Q Consensus 108 Qq~~~i~~~~---~~~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~----~l~~~----~~~l~~i~lII~DE 176 (1590)
||+.++.+.. -++|..|+|....+ .-...+..++|+|+||....+ .+..+ .+.--.|+-||+||
T Consensus 397 qW~~Ev~~rl~~n~LsV~~~HG~n~r~-----i~~~~L~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILDE 471 (901)
T KOG4439|consen 397 QWEAEVARRLEQNALSVYLYHGPNKRE-----ISAKELRKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILDE 471 (901)
T ss_pred HHHHHHHHHHhhcceEEEEecCCcccc-----CCHHHHhhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhhh
Confidence 9999999865 48899999976422 224567799999999998866 22211 11123467899999
Q ss_pred cccccCCCcHHHHHHHHHhcCCCCCcEEEEeccCCccCCCCChhcHHHHHHHHHhhcCCeeEe---------------ec
Q 000384 177 CHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFT---------------IE 241 (1590)
Q Consensus 177 aH~~~~~~~~~~im~~~~~~~~~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~~---------------~~ 241 (1590)
||.+.....-+...- ..-....++.|||||++|+. ..+..|-..|....+. ..
T Consensus 472 AH~IrN~~tq~S~AV----C~L~a~~RWclTGTPiqNn~--------~DvysLlrFLr~~pF~D~~~Wke~i~~~s~~g~ 539 (901)
T KOG4439|consen 472 AHNIRNSNTQCSKAV----CKLSAKSRWCLTGTPIQNNL--------WDVYSLLRFLRCPPFGDLKQWKENIDNMSKGGA 539 (901)
T ss_pred hhhhcccchhHHHHH----HHHhhcceeecccCccccch--------hHHHHHHHHhcCCCcchHHHHHHhccCccccch
Confidence 999976533322211 00133567999999999872 3344444444433222 00
Q ss_pred chhhh--------------hh---cccCcceeeEeccCCCC-cccchhhhHHHhhhhhhh-hHHHHHhhhh--------h
Q 000384 242 DKTEM--------------EV---FVPSAKESCRFYDQSKF-CGSDLKGKLEVSWSKFDA-SLSKLQGSQL--------N 294 (1590)
Q Consensus 242 ~~~~l--------------~~---~~~~p~~~~~~y~~~~~-~~~~l~~~~~~~~~~~~~-~~~~l~~~~~--------~ 294 (1590)
++-.+ .. .+..|...+........ ......+.+.+...++.. ++.. ..+.. .
T Consensus 540 ~rlnll~K~LmLRRTKdQl~a~~klv~Lp~k~i~l~~leLs~~E~~vY~i~~~askk~~kq~L~~-~e~~~~~~~~~s~~ 618 (901)
T KOG4439|consen 540 NRLNLLTKSLMLRRTKDQLQANGKLVNLPEKNIELHELELSGDEAKVYQIMMEASKKLFKQFLLQ-REDRNNDGGYQSRN 618 (901)
T ss_pred hhhhhhhhhHHhhhhHHhhccccccccCcccceEEEEEeecchHHHHHHHHHHHHHHHHHHHHHh-hhhhccccCccccc
Confidence 11000 00 00111111110000000 000000011111111100 0000 00000 0
Q ss_pred ----------hhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHhHhHHHHHHHHhhhh---HHHHHH
Q 000384 295 ----------CYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAV-KICLEKVLKAQEECEIYRQSS---LQCKYF 360 (1590)
Q Consensus 295 ----------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 360 (1590)
.|..+.......... .....-+...+-.|...|..-.+ ...++ ..+.+...... ......
T Consensus 619 ~~~~~~~e~~~~~~~~pR~~aagsn-~~~~s~IL~LLlrLRQ~ccH~~~~k~~ld-----~~~~~~~g~~~sde~~~e~~ 692 (901)
T KOG4439|consen 619 RFIGGHDEFGNYYNIGPRFLAAGSN-FEIMSHILVLLLRLRQACCHFGLLKAALD-----PEEFQMNGGDDSDEEQLEED 692 (901)
T ss_pred hhccccccccccccccchhhhcCCc-hhhHHHHHHHHHHHHHHhcCcchhccccC-----HHHhhhcCcchhhhhhhhhh
Confidence 000111111000000 00011122222222222211100 00000 00000000000 000000
Q ss_pred HHHHHHHHhhhcCcchhhhccccCCccccccCCCCCHHHHHHHHHHHhcCCCCCcEEEEEEehHHHHHHHHHHHhhCCCC
Q 000384 361 LEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFL 440 (1590)
Q Consensus 361 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~~ 440 (1590)
....+..........+...-...............|-|+...+++++........+++|..+.......+..-|++
T Consensus 693 ~l~el~k~~~T~~~~D~~ed~p~~~~~q~Fe~~r~S~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~---- 768 (901)
T KOG4439|consen 693 NLAELEKNDETDCSDDNCEDLPTAFPDQAFEPDRPSCKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQK---- 768 (901)
T ss_pred HHHhhhhcccccccccccccccccchhhhcccccchhHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhh----
Confidence 0000111111100000000000000111223445688999999988876545667888888887777777777777
Q ss_pred CCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcC--C-CceEEEEcccccccccCCCccEEEEccCCCCHHHHHHHhccccc
Q 000384 441 THLTVAYLTGSTTSVDALTPKVQKEVLESFRG--G-KVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQ 517 (1590)
Q Consensus 441 ~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~--g-~~~vLVaT~vleeGIDip~~~~VI~fD~p~s~~~yiQr~GRA~R 517 (1590)
.+.....++|. ...++|+++++.|.. | ..-.|++-.+++.|||+-..|++|..|+-||+.---|...|.-|
T Consensus 769 ~g~~y~si~Gq------v~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR 842 (901)
T KOG4439|consen 769 GGHIYTSITGQ------VLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYR 842 (901)
T ss_pred CCeeeeeecCc------cchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecccCHHHHHHHHHHHHH
Confidence 46777888998 789999999999963 3 45567777899999999999999999999999999999999999
Q ss_pred cCceEEEEecc
Q 000384 518 HNSQFILMLER 528 (1590)
Q Consensus 518 ~gs~~ivlv~~ 528 (1590)
.|++-.+++.+
T Consensus 843 ~GQkK~V~IhR 853 (901)
T KOG4439|consen 843 MGQKKDVFIHR 853 (901)
T ss_pred hcccCceEEEE
Confidence 99985555544
|
|
| >cd02844 PAZ_CAF_like PAZ domain, CAF_like subfamily | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.5e-17 Score=166.52 Aligned_cols=121 Identities=45% Similarity=0.683 Sum_probs=103.4
Q ss_pred CCcceeccCCCcCcccccCcEEEeccCCceEEEEEecCCCCCCCCCCCCCCCCCchHHHHHhhhccccccCCCCceEEee
Q 000384 877 GKDVIHLANGSVDAKNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLK 956 (1590)
Q Consensus 877 ~~~~~~~~~~~~~~~~l~~~vV~~~~~~~~y~v~~i~~d~~p~spf~~~~~~~~~ty~~yy~~k~~~~i~~~~QPlL~~~ 956 (1590)
..+.++++|+++..+.++|++|+++|+++.|.|.+|. |++|.|+|+......+.||.+||+++||+.|.+++||||+++
T Consensus 15 ~~~~l~~~~~~~~~~~l~g~~V~t~hn~r~Y~I~~i~-~~~p~s~F~~~~~~~~~Sy~eYy~~kY~i~L~~~~QPLL~~~ 93 (135)
T cd02844 15 ASDLLHLADGSFCACDLKGSVVTAPHNGRFYVISGIL-DLNANSSFPGKEGLGYATYAEYFKEKYGIVLNHPNQPLLKGK 93 (135)
T ss_pred ccceeeeccCcccHHHhcCCEEEEcCCCcEEEEEEEc-CCCccCcccCCCCCceeeHHHHHHHHhCceeccCCcceEEEe
Confidence 3567899999999999999999999999999999999 999999998542224689999999999999999999999999
Q ss_pred ccCCccccccccCCCCCCCCCCCCCCCCCCCCceeeeccccceecccc
Q 000384 957 QSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVP 1004 (1590)
Q Consensus 957 ~~~~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pe~~~~~~~p 1004 (1590)
++++++|+|+++....+. ...+.+.+..++||||+|.++++|
T Consensus 94 ~~~~~~NlL~~~~~~~~~------~~~~~~~~~~v~L~PELC~~~~~p 135 (135)
T cd02844 94 QIFNLHNLLHNRFEEKGE------SEEKEKDRYFVELPPELCSVIDLP 135 (135)
T ss_pred cccccceecccccccccc------cccccccceEEEeChHHhccccCC
Confidence 999999999997643221 112345677789999999999987
|
CAF (for carpel factory) is a plant homolog of Dicer. CAF has been implicated in flower morphogenesis and in early Arabidopsis development and might function through posttranscriptional regulation of specific mRNA molecules. PAZ domains are named after the proteins Piwi, Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes. |
| >PRK00102 rnc ribonuclease III; Reviewed | Back alignment and domain information |
|---|
Probab=99.72 E-value=3e-17 Score=185.51 Aligned_cols=72 Identities=25% Similarity=0.348 Sum_probs=63.0
Q ss_pred cCCchhhHHHHHHhCCCCCCceeEeecccccccccccCCcccccceeeEEEEEEEecCCceEEEeCCCCCCccchhhhHH
Q 000384 1493 KGGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAA 1572 (1590)
Q Consensus 1493 ~~~~k~~L~e~~~~~~~~~P~y~~~~~~~~~~~~~~~Gp~h~~~~~~F~~~v~i~~~~~~~~~~~g~~~~sKK~A~~~AA 1572 (1590)
..|||+.|+||||++++..|+|+++++ +||.|. +.|+|.|.++ +...+.|.| +|||.||+.||
T Consensus 157 ~~~pk~~L~e~~~~~~~~~p~y~~~~~---------~g~~~~---~~f~~~v~i~----~~~~~~g~g-~skk~Ae~~AA 219 (229)
T PRK00102 157 VKDYKTRLQELLQGRGLPLPEYELVKE---------EGPAHD---KEFTVEVTVN----GKELGEGTG-SSKKEAEQAAA 219 (229)
T ss_pred cCCHHHHHHHHHHHcCCCCCceEEeec---------cCCCCC---ceEEEEEEEC----CEEEEEeee-CCHHHHHHHHH
Confidence 468999999999999999999999887 899998 8899888873 456677777 67999999999
Q ss_pred HHHHHHHHH
Q 000384 1573 LIMLHELER 1581 (1590)
Q Consensus 1573 ~~~l~~l~~ 1581 (1590)
+.||+.|+.
T Consensus 220 ~~Al~~l~~ 228 (229)
T PRK00102 220 KQALKKLKE 228 (229)
T ss_pred HHHHHHHhh
Confidence 999999864
|
|
| >PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.5e-17 Score=176.51 Aligned_cols=154 Identities=25% Similarity=0.378 Sum_probs=109.3
Q ss_pred CCCcHHHHHHHHHHh--------cCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHh
Q 000384 44 FIPRIYQLKVFEVAK--------RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRV 115 (1590)
Q Consensus 44 ~~pR~yQ~e~le~~~--------~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~ 115 (1590)
++||+||.+++..+. .+++++.+|||+|||.+++.++.++.. +++|++|+..|+.||.+.+..
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~---------~~l~~~p~~~l~~Q~~~~~~~ 72 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR---------KVLIVAPNISLLEQWYDEFDD 72 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC---------EEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc---------ceeEecCHHHHHHHHHHHHHH
Confidence 679999999999987 378999999999999999987777642 699999999999999999976
Q ss_pred hcCCceEEEecCC----------CCCccchHHHHHhcCCCcEEEEcHHHHHHHHHhc-----------CcCccceeEEEE
Q 000384 116 HTDFEVEEYYGAK----------GVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA-----------FLSLDIVCFIVI 174 (1590)
Q Consensus 116 ~~~~~v~~~~G~~----------~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~~-----------~~~l~~i~lII~ 174 (1590)
+..-......... ....+....-.......+++++|++.|....... .......++||+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~ 152 (184)
T PF04851_consen 73 FGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVII 152 (184)
T ss_dssp HSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEE
T ss_pred hhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEE
Confidence 6543333221110 0001111112233467899999999998876531 123457889999
Q ss_pred eccccccCCCcHHHHHHHHHhcCCCCCcEEEEeccCCc
Q 000384 175 DECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVV 212 (1590)
Q Consensus 175 DEaH~~~~~~~~~~im~~~~~~~~~~priLgLTATP~~ 212 (1590)
|||||+.+...|..++. ...+.+|+|||||.+
T Consensus 153 DEaH~~~~~~~~~~i~~------~~~~~~l~lTATp~r 184 (184)
T PF04851_consen 153 DEAHHYPSDSSYREIIE------FKAAFILGLTATPFR 184 (184)
T ss_dssp ETGGCTHHHHHHHHHHH------SSCCEEEEEESS-S-
T ss_pred ehhhhcCCHHHHHHHHc------CCCCeEEEEEeCccC
Confidence 99999987655777776 467889999999963
|
1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B .... |
| >PRK12904 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.6e-15 Score=189.56 Aligned_cols=128 Identities=13% Similarity=0.099 Sum_probs=104.3
Q ss_pred CHHHHHHHHHHHhcCCCCCcEEEEEEehHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCc
Q 000384 396 STKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKV 475 (1590)
Q Consensus 396 s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~ 475 (1590)
..|...+.+.+.+.. ..+..+||||+++..++.|++.|.. .++....+||. +.+|+..+.+|+.+..
T Consensus 413 ~~K~~aI~~~I~~~~-~~grpVLIft~Si~~se~Ls~~L~~----~gi~~~vLnak--------q~eREa~Iia~Ag~~g 479 (830)
T PRK12904 413 KEKFDAVVEDIKERH-KKGQPVLVGTVSIEKSELLSKLLKK----AGIPHNVLNAK--------NHEREAEIIAQAGRPG 479 (830)
T ss_pred HHHHHHHHHHHHHHH-hcCCCEEEEeCcHHHHHHHHHHHHH----CCCceEeccCc--------hHHHHHHHHHhcCCCc
Confidence 578888988886543 3466899999999999999999998 57888889885 5688999999999999
Q ss_pred eEEEEcccccccccCCCc--------------------------------------cEEEEccCCCCHHHHHHHhccccc
Q 000384 476 NLLFATDVIEEGMHVPNC--------------------------------------SYVIRFDLPKTVSSYIQSRGRARQ 517 (1590)
Q Consensus 476 ~vLVaT~vleeGIDip~~--------------------------------------~~VI~fD~p~s~~~yiQr~GRA~R 517 (1590)
.|+|||+++++|+||+-- =+||--..+.|-+---|-+|||||
T Consensus 480 ~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagR 559 (830)
T PRK12904 480 AVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGR 559 (830)
T ss_pred eEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhccccc
Confidence 999999999999999753 267888889999999999999999
Q ss_pred cCce--EEEEeccchHHhhhh
Q 000384 518 HNSQ--FILMLERSERSVTDT 536 (1590)
Q Consensus 518 ~gs~--~ivlv~~~E~~~~~~ 536 (1590)
.|.. ..+++.-++..|+.+
T Consensus 560 QGdpGss~f~lSleD~l~~~f 580 (830)
T PRK12904 560 QGDPGSSRFYLSLEDDLMRIF 580 (830)
T ss_pred CCCCCceeEEEEcCcHHHHhh
Confidence 8853 333344344556544
|
|
| >TIGR00631 uvrb excinuclease ABC, B subunit | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.5e-15 Score=189.66 Aligned_cols=129 Identities=19% Similarity=0.336 Sum_probs=109.5
Q ss_pred CCHHHHHHHHHHHhcCCCCCcEEEEEEehHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCC
Q 000384 395 ISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGK 474 (1590)
Q Consensus 395 ~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~ 474 (1590)
...++..|++.+..+. ..+.++||||+++..++.|.+.|.. .++.+.++||. ++..+|.++++.|+.|+
T Consensus 424 ~~~qi~~Ll~eI~~~~-~~g~~vLIf~~tk~~ae~L~~~L~~----~gi~~~~lh~~------~~~~eR~~~l~~fr~G~ 492 (655)
T TIGR00631 424 TDGQVDDLLSEIRQRV-ARNERVLVTTLTKKMAEDLTDYLKE----LGIKVRYLHSE------IDTLERVEIIRDLRLGE 492 (655)
T ss_pred ccchHHHHHHHHHHHH-cCCCEEEEEECCHHHHHHHHHHHhh----hccceeeeeCC------CCHHHHHHHHHHHhcCC
Confidence 3456677777776654 4567999999999999999999988 47889999998 89999999999999999
Q ss_pred ceEEEEcccccccccCCCccEEEEcc-----CCCCHHHHHHHhccccccCceEEEEe-ccchHHhh
Q 000384 475 VNLLFATDVIEEGMHVPNCSYVIRFD-----LPKTVSSYIQSRGRARQHNSQFILML-ERSERSVT 534 (1590)
Q Consensus 475 ~~vLVaT~vleeGIDip~~~~VI~fD-----~p~s~~~yiQr~GRA~R~gs~~ivlv-~~~E~~~~ 534 (1590)
+.|||||+++++|+|+|++++||++| .|.+..+|+||+|||||...+.++++ ...+..|.
T Consensus 493 i~VLV~t~~L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~~~G~vi~~~~~~~~~~~ 558 (655)
T TIGR00631 493 FDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKVIMYADKITDSMQ 558 (655)
T ss_pred ceEEEEcChhcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCCCCCEEEEEEcCCCHHHH
Confidence 99999999999999999999999999 79999999999999999866544444 44444443
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) |
| >KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.8e-15 Score=178.97 Aligned_cols=327 Identities=17% Similarity=0.210 Sum_probs=201.0
Q ss_pred CcHHHHHHHHHHh-cCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhhcCCceEEE
Q 000384 46 PRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEY 124 (1590)
Q Consensus 46 pR~yQ~e~le~~~-~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~~~~v~~~ 124 (1590)
-..|-.++++.+. ++-+||.++||||||...--++.+.. ....+++.+..|.+.-|.-.++.+....+-+.+.-
T Consensus 52 I~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG-----~~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~ 126 (674)
T KOG0922|consen 52 IYKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAG-----FASSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEE 126 (674)
T ss_pred HHHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcc-----cccCCcEEeecCchHHHHHHHHHHHHHhCCCcCce
Confidence 3455556666665 46789999999999986554443321 12333488889998766666666666554443333
Q ss_pred ecCCCCCccchHHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCCCc-HHHHHHHHHhcCCCCCcE
Q 000384 125 YGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHP-YTKIMKEFYHKSDNKPKV 203 (1590)
Q Consensus 125 ~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~~~-~~~im~~~~~~~~~~pri 203 (1590)
.|-. +. .-+..-....|.++|.++|++.+.... .++++++||+||||.-.-... .-.+++... ...+.-++
T Consensus 127 VGY~-IR-----Fed~ts~~TrikymTDG~LLRE~l~Dp-~LskYsvIIlDEAHERsl~TDiLlGlLKki~-~~R~~Lkl 198 (674)
T KOG0922|consen 127 VGYT-IR-----FEDSTSKDTRIKYMTDGMLLREILKDP-LLSKYSVIILDEAHERSLHTDILLGLLKKIL-KKRPDLKL 198 (674)
T ss_pred eeeE-EE-----ecccCCCceeEEEecchHHHHHHhcCC-ccccccEEEEechhhhhhHHHHHHHHHHHHH-hcCCCceE
Confidence 3311 00 001112367899999999998775433 478999999999997542211 122222221 12334689
Q ss_pred EEEeccCCccCCCCChhcHHHHHHHHHhhcC-CeeEeecchhhhhhcccCcceeeEeccCCCCcccchhhhHHHhhhhhh
Q 000384 204 FGMTASPVVRKGVSSAMDCEGQISELESTLD-SQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFD 282 (1590)
Q Consensus 204 LgLTATP~~~~~~~~~~~~~~~i~~Le~~l~-~~i~~~~~~~~l~~~~~~p~~~~~~y~~~~~~~~~l~~~~~~~~~~~~ 282 (1590)
+.||||..- ..+...+. +.+.++..|.- | .-++|.+.+.
T Consensus 199 IimSATlda--------------~kfS~yF~~a~i~~i~GR~f-------P--Vei~y~~~p~----------------- 238 (674)
T KOG0922|consen 199 IIMSATLDA--------------EKFSEYFNNAPILTIPGRTF-------P--VEILYLKEPT----------------- 238 (674)
T ss_pred EEEeeeecH--------------HHHHHHhcCCceEeecCCCC-------c--eeEEeccCCc-----------------
Confidence 999999641 22222222 23443332210 1 1112211110
Q ss_pred hhHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHhHHHHHHHHhhhhHHHHHHHH
Q 000384 283 ASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLE 362 (1590)
Q Consensus 283 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (1590)
.+|+
T Consensus 239 ---------------------------------------------------------------------------~dYv- 242 (674)
T KOG0922|consen 239 ---------------------------------------------------------------------------ADYV- 242 (674)
T ss_pred ---------------------------------------------------------------------------hhhH-
Confidence 0001
Q ss_pred HHHHHHhhhcCcchhhhccccCCccccccCCCCCHHHHHHHHHHHhcCCCCCcEEEEEEehHHHHHHHHHHHhhC----C
Q 000384 363 EVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKV----P 438 (1590)
Q Consensus 363 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~----~ 438 (1590)
..-+...+++... ++..-++||-...+..+.+++.|.+. +
T Consensus 243 ---------------------------------~a~~~tv~~Ih~~---E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~ 286 (674)
T KOG0922|consen 243 ---------------------------------DAALITVIQIHLT---EPPGDILVFLTGQEEIEAACELLRERAKSLP 286 (674)
T ss_pred ---------------------------------HHHHHHHHHHHcc---CCCCCEEEEeCCHHHHHHHHHHHHHHhhhcc
Confidence 1111222222222 22335899999998888888777654 1
Q ss_pred CCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCceEEEEcccccccccCCCccEEEE--------ccC---------
Q 000384 439 FLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIR--------FDL--------- 501 (1590)
Q Consensus 439 ~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~--------fD~--------- 501 (1590)
......+..++|. |+.++|.++.+.-..|..+|++||+++|..|.|+++.+||. |++
T Consensus 287 ~~~~~~~lply~a------L~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v 360 (674)
T KOG0922|consen 287 EDCPELILPLYGA------LPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIV 360 (674)
T ss_pred ccCcceeeeeccc------CCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeE
Confidence 1111145668888 99999999999999999999999999999999999999994 443
Q ss_pred -CCCHHHHHHHhccccccCceEEEEeccchHHhhhhhhcCChhh
Q 000384 502 -PKTVSSYIQSRGRARQHNSQFILMLERSERSVTDTALSRDPEA 544 (1590)
Q Consensus 502 -p~s~~~yiQr~GRA~R~gs~~ivlv~~~E~~~~~~~~~~~~~~ 544 (1590)
|-|-.+-.||.|||||.|.+-+.-++.++.+ .++.....|+.
T Consensus 361 ~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~-~~~~~~~~PEI 403 (674)
T KOG0922|consen 361 VPISKASANQRAGRAGRTGPGKCYRLYTESAY-DKMPLQTVPEI 403 (674)
T ss_pred EechHHHHhhhcccCCCCCCceEEEeeeHHHH-hhcccCCCCce
Confidence 4477888999999999998866666665555 55544555554
|
|
| >KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.5e-16 Score=173.36 Aligned_cols=100 Identities=26% Similarity=0.431 Sum_probs=92.4
Q ss_pred CcEEEEEEehHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCceEEEEcccccccccCCCc
Q 000384 414 QVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNC 493 (1590)
Q Consensus 414 ~~k~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~~vLVaT~vleeGIDip~~ 493 (1590)
-.++||||.++..++.|.+++.+-.. .++.|.++||+ ..+.+|.+-++.|+.+..++||||+|+.+||||..+
T Consensus 505 mdkaiifcrtk~dcDnLer~~~qkgg-~~~scvclhgD------rkP~Erk~nle~Fkk~dvkflictdvaargldi~g~ 577 (725)
T KOG0349|consen 505 MDKAIIFCRTKQDCDNLERMMNQKGG-KHYSCVCLHGD------RKPDERKANLESFKKFDVKFLICTDVAARGLDITGL 577 (725)
T ss_pred cCceEEEEeccccchHHHHHHHHcCC-ccceeEEEecC------CChhHHHHHHHhhhhcCeEEEEEehhhhccccccCC
Confidence 45899999999999999999987432 56899999999 688999999999999999999999999999999999
Q ss_pred cEEEEccCCCCHHHHHHHhccccccCc
Q 000384 494 SYVIRFDLPKTVSSYIQSRGRARQHNS 520 (1590)
Q Consensus 494 ~~VI~fD~p~s~~~yiQr~GRA~R~gs 520 (1590)
-++|+.-+|..-..|+||+||+||+..
T Consensus 578 p~~invtlpd~k~nyvhrigrvgraer 604 (725)
T KOG0349|consen 578 PFMINVTLPDDKTNYVHRIGRVGRAER 604 (725)
T ss_pred ceEEEEecCcccchhhhhhhccchhhh
Confidence 999999999999999999999999754
|
|
| >KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=7.3e-16 Score=189.46 Aligned_cols=344 Identities=22% Similarity=0.301 Sum_probs=210.8
Q ss_pred CCCCcHHHHHHHHH--Hh-cCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhh---
Q 000384 43 NFIPRIYQLKVFEV--AK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVH--- 116 (1590)
Q Consensus 43 ~~~pR~yQ~e~le~--~~-~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~--- 116 (1590)
.....+||.|.+.. ++ ++|.|..+||+.|||++|-++++...- -.++.++++.|-++.+..-...+..+
T Consensus 221 i~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l-----~~rr~~llilp~vsiv~Ek~~~l~~~~~~ 295 (1008)
T KOG0950|consen 221 ILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVL-----CRRRNVLLILPYVSIVQEKISALSPFSID 295 (1008)
T ss_pred HHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHH-----HHhhceeEecceeehhHHHHhhhhhhccc
Confidence 34567788887643 33 489999999999999999887765432 13456999999988887766666655
Q ss_pred cCCceEEEecCCCCCccchHHHHHhcCCCcEEEEcHHHHHHHHHhc--CcCccceeEEEEeccccccCCCcHH---H-HH
Q 000384 117 TDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA--FLSLDIVCFIVIDECHHATGNHPYT---K-IM 190 (1590)
Q Consensus 117 ~~~~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~~--~~~l~~i~lII~DEaH~~~~~~~~~---~-im 190 (1590)
+|+.|..|+|...... .++.-.|.|+|.++-..+++.. .-+++.+.+||+||-|.+.+.+... . +-
T Consensus 296 ~G~~ve~y~g~~~p~~--------~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~ 367 (1008)
T KOG0950|consen 296 LGFPVEEYAGRFPPEK--------RRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILELLLA 367 (1008)
T ss_pred cCCcchhhcccCCCCC--------cccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHHHHHH
Confidence 4899999987665432 2346689999999875554432 1245778899999999998664421 1 22
Q ss_pred HHHHhcCCCCCcEEEEeccCCccCCCCChhcHHHHHHHHHhhcCCeeEeecchh-hhhhcccCcceeeEeccCCCCcccc
Q 000384 191 KEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKT-EMEVFVPSAKESCRFYDQSKFCGSD 269 (1590)
Q Consensus 191 ~~~~~~~~~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~~~~~~~-~l~~~~~~p~~~~~~y~~~~~~~~~ 269 (1590)
+-.|.......+|+|||||..++ ..|+..|++.+|+..-+. .+..++. |- ....
T Consensus 368 k~~y~~~~~~~~iIGMSATi~N~-------------~lL~~~L~A~~y~t~fRPv~L~E~ik-~G-------~~i~---- 422 (1008)
T KOG0950|consen 368 KILYENLETSVQIIGMSATIPNN-------------SLLQDWLDAFVYTTRFRPVPLKEYIK-PG-------SLIY---- 422 (1008)
T ss_pred HHHHhccccceeEeeeecccCCh-------------HHHHHHhhhhheecccCcccchhccC-CC-------cccc----
Confidence 33344445557899999997643 567777877666553221 1111110 00 0000
Q ss_pred hhhhHHHhhhhhhhhHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHhHHHHHHH
Q 000384 270 LKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEI 349 (1590)
Q Consensus 270 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~ 349 (1590)
+. . +..+ .+
T Consensus 423 -------------------------------~~-~--r~~~---lr---------------------------------- 431 (1008)
T KOG0950|consen 423 -------------------------------ES-S--RNKV---LR---------------------------------- 431 (1008)
T ss_pred -------------------------------cc-h--hhHH---HH----------------------------------
Confidence 00 0 0000 00
Q ss_pred HhhhhHHHHHHHHHHHHHHhhhcCcchhhhccccCCccccccCCCCCHHHHHHHHHHHhcCCCCCcEEEEEEehHHHHHH
Q 000384 350 YRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKV 429 (1590)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~ta~~ 429 (1590)
++.......+... ++ ..+..+..+-- .++.++||||.+|..+..
T Consensus 432 -------------~ia~l~~~~~g~~--------------------dp--D~~v~L~tet~-~e~~~~lvfc~sk~~ce~ 475 (1008)
T KOG0950|consen 432 -------------EIANLYSSNLGDE--------------------DP--DHLVGLCTETA-PEGSSVLVFCPSKKNCEN 475 (1008)
T ss_pred -------------HhhhhhhhhcccC--------------------CC--cceeeehhhhh-hcCCeEEEEcCcccchHH
Confidence 0000000000000 00 01111111110 234578999988876655
Q ss_pred HHHHHhh-C-------------------------CC-CCC-eeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCceEEEEc
Q 000384 430 VERFVKK-V-------------------------PF-LTH-LTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFAT 481 (1590)
Q Consensus 430 L~~~L~~-~-------------------------~~-~~~-~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~~vLVaT 481 (1590)
++..+.+ + +. +.. +.-..-.|...++.+++.++|+.+...||+|-+.+++||
T Consensus 476 ~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aT 555 (1008)
T KOG0950|consen 476 VASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVAT 555 (1008)
T ss_pred HHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEec
Confidence 5533321 1 10 000 111122244444556999999999999999999999999
Q ss_pred ccccccccCCCccEEEEccC----CCCHHHHHHHhccccccCc----eEEEEeccchH
Q 000384 482 DVIEEGMHVPNCSYVIRFDL----PKTVSSYIQSRGRARQHNS----QFILMLERSER 531 (1590)
Q Consensus 482 ~vleeGIDip~~~~VI~fD~----p~s~~~yiQr~GRA~R~gs----~~ivlv~~~E~ 531 (1590)
+.+.-|+++|+-.++|++-. ..+-..|.|+.|||||.|- ..++++...|.
T Consensus 556 STlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~ 613 (1008)
T KOG0950|consen 556 STLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSEK 613 (1008)
T ss_pred chhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhcccccCcceEEEeeccch
Confidence 99999999999999998753 4477899999999999873 36677666554
|
|
| >TIGR02191 RNaseIII ribonuclease III, bacterial | Back alignment and domain information |
|---|
Probab=99.68 E-value=9.6e-17 Score=180.44 Aligned_cols=70 Identities=21% Similarity=0.327 Sum_probs=61.3
Q ss_pred cCCchhhHHHHHHhCCCCCCceeEeecccccccccccCCcccccceeeEEEEEEEecCCceEEEeCCCCCCccchhhhHH
Q 000384 1493 KGGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAA 1572 (1590)
Q Consensus 1493 ~~~~k~~L~e~~~~~~~~~P~y~~~~~~~~~~~~~~~Gp~h~~~~~~F~~~v~i~~~~~~~~~~~g~~~~sKK~A~~~AA 1572 (1590)
..+||+.|+||||++++..|.|+++.+ +|++|. +.|+|+|.++ +...+.|.| +|||+||+.||
T Consensus 151 ~~~pk~~L~e~~~~~~~~~p~y~~~~~---------~g~~~~---~~f~~~v~~~----~~~~~~g~g-~skk~A~~~AA 213 (220)
T TIGR02191 151 LKDYKTALQEWAQARGKPLPEYRLIKE---------EGPDHD---KEFTVEVSVN----GEPYGEGKG-KSKKEAEQNAA 213 (220)
T ss_pred cCChHHHHHHHHHHcCCCCceEEEecc---------cCCCCC---ceEEEEEEEC----CEEEEEeee-CCHHHHHHHHH
Confidence 478999999999999999999999887 799998 8999888873 456777777 67999999999
Q ss_pred HHHHHHH
Q 000384 1573 LIMLHEL 1579 (1590)
Q Consensus 1573 ~~~l~~l 1579 (1590)
+.||+.|
T Consensus 214 ~~Al~~l 220 (220)
T TIGR02191 214 KAALEKL 220 (220)
T ss_pred HHHHHhC
Confidence 9999864
|
This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family. |
| >COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.8e-15 Score=200.23 Aligned_cols=435 Identities=17% Similarity=0.162 Sum_probs=238.6
Q ss_pred CCCCCCcHHHHHHHHHHh------cCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHH
Q 000384 41 SINFIPRIYQLKVFEVAK------RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIR 114 (1590)
Q Consensus 41 ~~~~~pR~yQ~e~le~~~------~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~ 114 (1590)
....++|+||.+.+++.. ..+.|+++++|.|||+.++.++....... ....+.++++||+ +++.+|.+++.
T Consensus 334 ~~~~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~--~~~~~~~liv~p~-s~~~nw~~e~~ 410 (866)
T COG0553 334 DLSAELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESI--KVYLGPALIVVPA-SLLSNWKREFE 410 (866)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcc--cCCCCCeEEEecH-HHHHHHHHHHh
Confidence 344678999999998855 47899999999999999999887743311 1113458999998 77889999998
Q ss_pred hhc-CCc-eEEEecCCCCCccchHHHHHhcCC-----CcEEEEcHHHHHHH-HHhcCcCccceeEEEEeccccccCCCc-
Q 000384 115 VHT-DFE-VEEYYGAKGVDEWDSQCWQKEINK-----NDVLVMTPQILLDA-LRKAFLSLDIVCFIVIDECHHATGNHP- 185 (1590)
Q Consensus 115 ~~~-~~~-v~~~~G~~~~d~~~~~~w~~~~~~-----~~VlV~T~q~L~~~-l~~~~~~l~~i~lII~DEaH~~~~~~~- 185 (1590)
++. .++ +..++|.........+.....+.. .+|+++|++.+... ..++.+.-..++.+|+||+|+++....
T Consensus 411 k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~~s~ 490 (866)
T COG0553 411 KFAPDLRLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKNDQSS 490 (866)
T ss_pred hhCccccceeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhhhhH
Confidence 887 466 778888764201111122222222 79999999999774 234456667889999999999765422
Q ss_pred -HHHHHHHHHhcCCCCCcEEEEeccCCccCCCCChhcHHHHHHHHHhhcCC----eeEeecchhhhhhcccCcceeeEec
Q 000384 186 -YTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDS----QVFTIEDKTEMEVFVPSAKESCRFY 260 (1590)
Q Consensus 186 -~~~im~~~~~~~~~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~----~i~~~~~~~~l~~~~~~p~~~~~~y 260 (1590)
+..+. .+ .....+.||+||+.++ +.+|.++++. ..... ....+......|.......
T Consensus 491 ~~~~l~-~~-----~~~~~~~LtgTPlen~-----------l~eL~sl~~~f~~p~~~~~-~~~~f~~~~~~~~~~~~~~ 552 (866)
T COG0553 491 EGKALQ-FL-----KALNRLDLTGTPLENR-----------LGELWSLLQEFLNPGLLGT-SFAIFTRLFEKPIQAEEDI 552 (866)
T ss_pred HHHHHH-HH-----hhcceeeCCCChHhhh-----------HHHHHHHHHHHhCCccccc-hHHHHHHHHhhhhhhcccc
Confidence 22222 22 3345599999997543 5555555542 11111 1123333333332211111
Q ss_pred cCCCCcccchhhhHHHhhhhhhhhHHHHHhhhhh--hhccchhhHHHH-HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 000384 261 DQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLN--CYKDMDDKHKTL-RKQLSDYHAKILYCLDELGLICAYEAVKICL 337 (1590)
Q Consensus 261 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~lg~~~a~~~~~~~~ 337 (1590)
.+ . .. ....+......+.+++. ...... ....++.+.... ...+......+........
T Consensus 553 ~~--~-~~-~~~~~~~l~~~i~~f~l--rr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~------------ 614 (866)
T COG0553 553 GP--L-EA-RELGIELLRKLLSPFIL--RRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGA------------ 614 (866)
T ss_pred cc--h-hh-HHHHHHHHHHHHHHHhh--cccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHH------------
Confidence 10 0 00 00000000001111100 000000 111111111110 0000000000000000000
Q ss_pred HHhHhHHHHHHHHhhhhHH------HHHHHHHHHHHHhhhcCcchhhhcc--ccCC------------ccccccCCCCC-
Q 000384 338 EKVLKAQEECEIYRQSSLQ------CKYFLEEVLHVIGSALPLADKIFLD--FGFD------------YSKAVDLGYIS- 396 (1590)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~------------~~~~~~~~~~s- 396 (1590)
.... ............ ....+...+..+.+........... .... ..........+
T Consensus 615 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 691 (866)
T COG0553 615 EKNQ---QLLEDLEKADSDENRIGDSELNILALLTRLRQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSK 691 (866)
T ss_pred HHHH---HHHHHHHhhccccccccchhhHHHHHHHHHHHhccCccccccccccccchhhhhhhcccccccccchhhhccc
Confidence 0000 000000000000 0000000111111111000000000 0000 00000011234
Q ss_pred HHHHHHHHHH-HhcCCCCCc--EEEEEEehHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCC
Q 000384 397 TKLHELLQLF-LSFGKSTQV--LCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGG 473 (1590)
Q Consensus 397 ~K~~~L~~lL-~~~~~~~~~--k~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g 473 (1590)
.|...+.+++ .... ..+. +++||++...+.+.|...+... ++....++|+ ++.+.|...+++|.++
T Consensus 692 ~k~~~l~~ll~~~~~-~~~~~~kvlifsq~t~~l~il~~~l~~~----~~~~~~ldG~------~~~~~r~~~i~~f~~~ 760 (866)
T COG0553 692 GKLQALDELLLDKLL-EEGHYHKVLIFSQFTPVLDLLEDYLKAL----GIKYVRLDGS------TPAKRRQELIDRFNAD 760 (866)
T ss_pred hHHHHHHHHHHHHHH-hhcccccEEEEeCcHHHHHHHHHHHHhc----CCcEEEEeCC------CChhhHHHHHHHhhcC
Confidence 7888888888 4443 3345 9999999999999999999883 4678889998 6789999999999986
Q ss_pred --CceEEEEcccccccccCCCccEEEEccCCCCHHHHHHHhccccccCceEEEEecc
Q 000384 474 --KVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLER 528 (1590)
Q Consensus 474 --~~~vLVaT~vleeGIDip~~~~VI~fD~p~s~~~yiQr~GRA~R~gs~~ivlv~~ 528 (1590)
..-+|++|.+++.|||+..++.||.||..||+....|...||.|.|++-.+.+.+
T Consensus 761 ~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r 817 (866)
T COG0553 761 EEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYR 817 (866)
T ss_pred CCCceEEEEecccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEEE
Confidence 4668888899999999999999999999999999999999999999985555544
|
|
| >cd02843 PAZ_dicer_like PAZ domain, dicer_like subfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.1e-16 Score=152.45 Aligned_cols=81 Identities=27% Similarity=0.433 Sum_probs=75.4
Q ss_pred CCcCcccccCcEEEeccCC----ceEEEEEecCCCCCCCCCCCCCCCCCchHHHHHhhhccccccCCCCceEEeeccCCc
Q 000384 886 GSVDAKNLKDMVVLAIHTG----RIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNP 961 (1590)
Q Consensus 886 ~~~~~~~l~~~vV~~~~~~----~~y~v~~i~~d~~p~spf~~~~~~~~~ty~~yy~~k~~~~i~~~~QPlL~~~~~~~~ 961 (1590)
..|+++.+.|+||+++|+| ++|+|.+|++|++|.|+|+.. ++.||.+||++|||+.|.+.+||||+|+.++.+
T Consensus 34 ~~f~~~~~~g~vV~t~YnN~d~pK~Y~V~dI~~dltP~S~F~~~---~~~Ty~eYyk~KY~I~I~~~~QPLL~v~~~s~~ 110 (122)
T cd02843 34 FKFDAEDYQDAVVMPWYRNFDQPQYFYVAEICTDLRPLSKFPGP---EYETFEEYYKKKYKLDIQNLNQPLLDVDHTSTR 110 (122)
T ss_pred CCCCHHHhCCCEEeecccCCCCCeEEEEEEEcCCCCCCCCCCCC---CCccHHHHHHHhcCeEeccCCCCcEeecCcccc
Confidence 3468889999999999998 799999999999999999854 489999999999999999999999999999999
Q ss_pred cccccccC
Q 000384 962 HNLLVNFN 969 (1590)
Q Consensus 962 ~n~l~~~~ 969 (1590)
+|||+|+.
T Consensus 111 lNll~pr~ 118 (122)
T cd02843 111 LNLLTPRY 118 (122)
T ss_pred ccccCccc
Confidence 99999864
|
Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes. |
| >COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.9e-15 Score=193.05 Aligned_cols=319 Identities=18% Similarity=0.159 Sum_probs=190.0
Q ss_pred CCCCCcHHHHHHHHHHhc----C-CEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhh
Q 000384 42 INFIPRIYQLKVFEVAKR----R-NTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVH 116 (1590)
Q Consensus 42 ~~~~pR~yQ~e~le~~~~----~-n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~ 116 (1590)
..-..+++|.++++.+.. . .+++.+|||+|||.+++.+....+... .....+++++.|++++++++++.++..
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~--~~~~~r~i~vlP~~t~ie~~~~r~~~~ 269 (733)
T COG1203 192 IEHEGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK--IKLKSRVIYVLPFRTIIEDMYRRAKEI 269 (733)
T ss_pred cCchhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc--ccccceEEEEccHHHHHHHHHHHHHhh
Confidence 344568999999998863 5 789999999999999999887766521 224567999999999999999999987
Q ss_pred cCCceEE---EecCCCCCccchHHH-----------HHhcCCCcEEEEcHHHHHHHHHhcCcC---ccceeEEEEecccc
Q 000384 117 TDFEVEE---YYGAKGVDEWDSQCW-----------QKEINKNDVLVMTPQILLDALRKAFLS---LDIVCFIVIDECHH 179 (1590)
Q Consensus 117 ~~~~v~~---~~G~~~~d~~~~~~w-----------~~~~~~~~VlV~T~q~L~~~l~~~~~~---l~~i~lII~DEaH~ 179 (1590)
++..... .+|...........+ .....-+-+++++.+.+.......... .-..+++||||+|-
T Consensus 270 ~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~ 349 (733)
T COG1203 270 FGLFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHL 349 (733)
T ss_pred hcccccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHh
Confidence 6533222 234332111111100 000111234444444443222111111 12347999999999
Q ss_pred ccCCCcHHHHHHHHHhcCCCCCcEEEEeccCCccCCCCChhcHHHHHHHHHhhcCCeeEeecchhhhhhcccCcceeeEe
Q 000384 180 ATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRF 259 (1590)
Q Consensus 180 ~~~~~~~~~im~~~~~~~~~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~~~~~~~~l~~~~~~p~~~~~~ 259 (1590)
+........+.............++.||||+-. .....|...+....... ..
T Consensus 350 ~~~~~~~~~l~~~i~~l~~~g~~ill~SATlP~-----------~~~~~l~~~~~~~~~~~-----------------~~ 401 (733)
T COG1203 350 YADETMLAALLALLEALAEAGVPVLLMSATLPP-----------FLKEKLKKALGKGREVV-----------------EN 401 (733)
T ss_pred hcccchHHHHHHHHHHHHhCCCCEEEEecCCCH-----------HHHHHHHHHHhccccee-----------------cc
Confidence 876533333333333444567899999999752 11222222221100000 00
Q ss_pred ccCCCCcccchhhhHHHhhhhhhhhHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 000384 260 YDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEK 339 (1590)
Q Consensus 260 y~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~a~~~~~~~~~~ 339 (1590)
...... .. +.+
T Consensus 402 ~~~~~~---------------------------------~~----------------------e~~-------------- 412 (733)
T COG1203 402 AKFCPK---------------------------------ED----------------------EPG-------------- 412 (733)
T ss_pred cccccc---------------------------------cc----------------------ccc--------------
Confidence 000000 00 000
Q ss_pred hHhHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcCcchhhhccccCCccccccCCCCCHHHHHHHHHHHhcCCCCCcEEEE
Q 000384 340 VLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCII 419 (1590)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~k~II 419 (1590)
..+ .... .... .+. ..+....... ...+.+++|
T Consensus 413 ---------~~~---~~~~----~~~~-----------------------------~~~-~~~~~~~~~~-~~~~~kvlv 445 (733)
T COG1203 413 ---------LKR---KERV----DVED-----------------------------GPQ-EELIELISEE-VKEGKKVLV 445 (733)
T ss_pred ---------ccc---ccch----hhhh-----------------------------hhh-Hhhhhcchhh-hccCCcEEE
Confidence 000 0000 0000 000 0111111111 145678999
Q ss_pred EEehHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHh----cCCCceEEEEcccccccccCCCccE
Q 000384 420 FVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESF----RGGKVNLLFATDVIEEGMHVPNCSY 495 (1590)
Q Consensus 420 Fv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~F----r~g~~~vLVaT~vleeGIDip~~~~ 495 (1590)
-||++..|..+++.|+.. +..+..+||. +..++|.+.++.+ +.+...|+|||+|.|-|+|+. +++
T Consensus 446 I~NTV~~Aie~Y~~Lk~~----~~~v~LlHSR------f~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid-fd~ 514 (733)
T COG1203 446 IVNTVDRAIELYEKLKEK----GPKVLLLHSR------FTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID-FDV 514 (733)
T ss_pred EEecHHHHHHHHHHHHhc----CCCEEEEecc------cchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-cCe
Confidence 999999999999999984 2278899999 8888888777754 457889999999999999995 777
Q ss_pred EEEccCCCCHHHHHHHhccccccC
Q 000384 496 VIRFDLPKTVSSYIQSRGRARQHN 519 (1590)
Q Consensus 496 VI~fD~p~s~~~yiQr~GRA~R~g 519 (1590)
+|. -+..+.+.|||.||+.|.|
T Consensus 515 mIT--e~aPidSLIQR~GRv~R~g 536 (733)
T COG1203 515 LIT--ELAPIDSLIQRAGRVNRHG 536 (733)
T ss_pred eee--cCCCHHHHHHHHHHHhhcc
Confidence 764 5667899999999999988
|
|
| >PRK13107 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.3e-14 Score=182.36 Aligned_cols=112 Identities=14% Similarity=0.167 Sum_probs=97.5
Q ss_pred CHHHHHHHHHHHhcCCCCCcEEEEEEehHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCc
Q 000384 396 STKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKV 475 (1590)
Q Consensus 396 s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~ 475 (1590)
..|..++++-+.+.. ..+..+||||.++..++.|+++|.. .++....+++. +...++..+.+.|+.|.
T Consensus 432 ~~K~~Aii~ei~~~~-~~GrpVLV~t~sv~~se~ls~~L~~----~gi~~~vLnak------~~~~Ea~ii~~Ag~~G~- 499 (908)
T PRK13107 432 DEKYQAIIKDIKDCR-ERGQPVLVGTVSIEQSELLARLMVK----EKIPHEVLNAK------FHEREAEIVAQAGRTGA- 499 (908)
T ss_pred HHHHHHHHHHHHHHH-HcCCCEEEEeCcHHHHHHHHHHHHH----CCCCeEeccCc------ccHHHHHHHHhCCCCCc-
Confidence 578888887666554 4577899999999999999999998 68888899998 78999999999999999
Q ss_pred eEEEEcccccccccCCC-------------------------------------ccEEEEccCCCCHHHHHHHhcccccc
Q 000384 476 NLLFATDVIEEGMHVPN-------------------------------------CSYVIRFDLPKTVSSYIQSRGRARQH 518 (1590)
Q Consensus 476 ~vLVaT~vleeGIDip~-------------------------------------~~~VI~fD~p~s~~~yiQr~GRA~R~ 518 (1590)
|+|||+++++|+||.= -=+||--..+.|-+---|-+|||||.
T Consensus 500 -VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQ 578 (908)
T PRK13107 500 -VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQ 578 (908)
T ss_pred -EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccC
Confidence 9999999999999862 22688888999999999999999998
Q ss_pred Cc
Q 000384 519 NS 520 (1590)
Q Consensus 519 gs 520 (1590)
|-
T Consensus 579 GD 580 (908)
T PRK13107 579 GD 580 (908)
T ss_pred CC
Confidence 84
|
|
| >KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.63 E-value=7e-15 Score=175.36 Aligned_cols=125 Identities=21% Similarity=0.243 Sum_probs=91.5
Q ss_pred CCHHHHHHHHHHhcCCCceEEEEcccccccccCCCccEEEE--------ccCCCCHHHH----------HHHhccccccC
Q 000384 458 LTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIR--------FDLPKTVSSY----------IQSRGRARQHN 519 (1590)
Q Consensus 458 ~~~~~r~~vl~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~--------fD~p~s~~~y----------iQr~GRA~R~g 519 (1590)
++.++|+++++.--.|..-|+|||+|+|..|.||++.+||. ||.-..+.+| -||.|||||.|
T Consensus 614 Ls~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg 693 (1172)
T KOG0926|consen 614 LSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG 693 (1172)
T ss_pred cCHHHhhhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC
Confidence 68899999999999999999999999999999999999994 6655544444 59999999999
Q ss_pred ceEEEEeccchHHhhhhhhcCChhhh---------hhhccccccccceeecCCCceecccChHHHHHHHhhh
Q 000384 520 SQFILMLERSERSVTDTALSRDPEAC---------FLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEM 582 (1590)
Q Consensus 520 s~~ivlv~~~E~~~~~~~~~~~~~~~---------~l~~~~~~~~~~~~v~~tga~lt~~~ai~ll~~yc~~ 582 (1590)
.++++-++.+..+-.+|.....|+.. .+..+..+....|-.++.....-+..|..+|...-+.
T Consensus 694 pGHcYRLYSSAVf~~~Fe~fS~PEIlk~Pve~lvLqMKsMnI~kVvnFPFPtpPd~~~L~~Aer~L~~LgAL 765 (1172)
T KOG0926|consen 694 PGHCYRLYSSAVFSNDFEEFSLPEILKKPVESLVLQMKSMNIDKVVNFPFPTPPDRSALEKAERRLKALGAL 765 (1172)
T ss_pred CCceeehhhhHHhhcchhhhccHHHhhCcHHHHHHHHHhcCccceecCCCCCCccHHHHHHHHHHHHHhccc
Confidence 99888877755554455555555541 1122344444456556666666777777777665544
|
|
| >PRK05298 excinuclease ABC subunit B; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1e-13 Score=178.27 Aligned_cols=126 Identities=21% Similarity=0.330 Sum_probs=106.5
Q ss_pred CHHHHHHHHHHHhcCCCCCcEEEEEEehHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCc
Q 000384 396 STKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKV 475 (1590)
Q Consensus 396 s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~ 475 (1590)
..++..|++.|..+. ..+.++||||+++..++.|.+.|.. .++.+..+||. ++..+|.++++.|+.|++
T Consensus 429 ~~q~~~L~~~L~~~~-~~g~~viIf~~t~~~ae~L~~~L~~----~gi~~~~~h~~------~~~~~R~~~l~~f~~g~i 497 (652)
T PRK05298 429 KGQVDDLLSEIRKRV-AKGERVLVTTLTKRMAEDLTDYLKE----LGIKVRYLHSD------IDTLERVEIIRDLRLGEF 497 (652)
T ss_pred cccHHHHHHHHHHHH-hCCCEEEEEeCCHHHHHHHHHHHhh----cceeEEEEECC------CCHHHHHHHHHHHHcCCc
Confidence 445667777776554 3567999999999999999999988 57889999998 899999999999999999
Q ss_pred eEEEEcccccccccCCCccEEEEccC-----CCCHHHHHHHhccccccCce-EEEEeccchHH
Q 000384 476 NLLFATDVIEEGMHVPNCSYVIRFDL-----PKTVSSYIQSRGRARQHNSQ-FILMLERSERS 532 (1590)
Q Consensus 476 ~vLVaT~vleeGIDip~~~~VI~fD~-----p~s~~~yiQr~GRA~R~gs~-~ivlv~~~E~~ 532 (1590)
++||||+++++|+|+|++++||++|. |.+..+|+||+||+||...+ .++++...+..
T Consensus 498 ~vlV~t~~L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~~~G~~i~~~~~~~~~ 560 (652)
T PRK05298 498 DVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKVILYADKITDS 560 (652)
T ss_pred eEEEEeCHHhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCCCCCEEEEEecCCCHH
Confidence 99999999999999999999999885 78999999999999997554 44444433333
|
|
| >KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.2e-15 Score=179.00 Aligned_cols=128 Identities=22% Similarity=0.183 Sum_probs=103.1
Q ss_pred CCCHHHHHHHHHHHhcCCCCCcEEEEEEehHHHHHHHHHHHhhCCCC------------------CCeeEEEEEcCCCCC
Q 000384 394 YISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFL------------------THLTVAYLTGSTTSV 455 (1590)
Q Consensus 394 ~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~~------------------~~~~~~~l~G~~~~~ 455 (1590)
..|+|+..|++||.... .-+-+.+||.++..+.+.+.++|...+.- .|.....+.|.
T Consensus 1123 ~~SgKmiLLleIL~mce-eIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGs---- 1197 (1567)
T KOG1015|consen 1123 EHSGKMILLLEILRMCE-EIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGS---- 1197 (1567)
T ss_pred hcCcceehHHHHHHHHH-HhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCc----
Confidence 45899999999997654 44669999999999999999999865321 11122233444
Q ss_pred CCCCHHHHHHHHHHhcCCC----ceEEEEcccccccccCCCccEEEEccCCCCHHHHHHHhccccccCceEEEEecc
Q 000384 456 DALTPKVQKEVLESFRGGK----VNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLER 528 (1590)
Q Consensus 456 ~~~~~~~r~~vl~~Fr~g~----~~vLVaT~vleeGIDip~~~~VI~fD~p~s~~~yiQr~GRA~R~gs~~ivlv~~ 528 (1590)
....+|..+.+.|.+-. .-.||+|.+++.|||+-++|-||.||..||+.--+|++=|+.|.|+.--+++++
T Consensus 1198 --t~s~~R~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYR 1272 (1567)
T KOG1015|consen 1198 --TTSQSRKKWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYR 1272 (1567)
T ss_pred --ccHHHHHHHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehh
Confidence 67889999999998642 348999999999999999999999999999999999999999999985555555
|
|
| >COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.61 E-value=5e-14 Score=162.85 Aligned_cols=105 Identities=20% Similarity=0.366 Sum_probs=95.3
Q ss_pred CCcEEEEEEehHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCceEEEEcccccccccCCC
Q 000384 413 TQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPN 492 (1590)
Q Consensus 413 ~~~k~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~~vLVaT~vleeGIDip~ 492 (1590)
.+.|++|-+-++.+|+.|.++|.. .++++.++|+. ...-+|.+++.++|.|++.|||.-+.+-||||+|.
T Consensus 445 ~~eRvLVTtLTKkmAEdLT~Yl~e----~gikv~YlHSd------idTlER~eIirdLR~G~~DvLVGINLLREGLDiPE 514 (663)
T COG0556 445 KNERVLVTTLTKKMAEDLTEYLKE----LGIKVRYLHSD------IDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPE 514 (663)
T ss_pred cCCeEEEEeehHHHHHHHHHHHHh----cCceEEeeecc------chHHHHHHHHHHHhcCCccEEEeehhhhccCCCcc
Confidence 356999999999999999999998 58999999998 88999999999999999999999999999999999
Q ss_pred ccEEEEccC-----CCCHHHHHHHhccccccCceEEEEec
Q 000384 493 CSYVIRFDL-----PKTVSSYIQSRGRARQHNSQFILMLE 527 (1590)
Q Consensus 493 ~~~VI~fD~-----p~s~~~yiQr~GRA~R~gs~~ivlv~ 527 (1590)
|.+|..+|. ..|..++||-+|||.|.-.+.++|.-
T Consensus 515 VsLVAIlDADKeGFLRse~SLIQtIGRAARN~~GkvIlYA 554 (663)
T COG0556 515 VSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKVILYA 554 (663)
T ss_pred eeEEEEeecCccccccccchHHHHHHHHhhccCCeEEEEc
Confidence 999999985 45999999999999997666555553
|
|
| >smart00487 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.1e-14 Score=161.30 Aligned_cols=161 Identities=25% Similarity=0.306 Sum_probs=126.3
Q ss_pred CCCCCcHHHHHHHHHHhc--CCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhhcC-
Q 000384 42 INFIPRIYQLKVFEVAKR--RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTD- 118 (1590)
Q Consensus 42 ~~~~pR~yQ~e~le~~~~--~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~~- 118 (1590)
....++++|.++++.+.. +++++.++||+|||.+++.++.+.+. ....++++|++|+..++.||...+...+.
T Consensus 5 ~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~----~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~ 80 (201)
T smart00487 5 GFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALK----RGKGKRVLVLVPTRELAEQWAEELKKLGPS 80 (201)
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhc----ccCCCcEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 356799999999999986 79999999999999988888777665 23346799999999999999999998763
Q ss_pred ---CceEEEecCCCCCccchHHHHHhcCCC-cEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCCCcHHHHHHHHH
Q 000384 119 ---FEVEEYYGAKGVDEWDSQCWQKEINKN-DVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFY 194 (1590)
Q Consensus 119 ---~~v~~~~G~~~~d~~~~~~w~~~~~~~-~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~~~~~~im~~~~ 194 (1590)
.....+.+... ...|....... +|+++|++.+.+.+........++++||+||||++... .+...+..++
T Consensus 81 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~-~~~~~~~~~~ 154 (201)
T smart00487 81 LGLKVVGLYGGDSK-----REQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDG-GFGDQLEKLL 154 (201)
T ss_pred CCeEEEEEeCCcch-----HHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcC-CcHHHHHHHH
Confidence 23333333221 33455555555 99999999999999887777788999999999999864 4555666666
Q ss_pred hcCCCCCcEEEEeccCCc
Q 000384 195 HKSDNKPKVFGMTASPVV 212 (1590)
Q Consensus 195 ~~~~~~priLgLTATP~~ 212 (1590)
......+++++|||||..
T Consensus 155 ~~~~~~~~~v~~saT~~~ 172 (201)
T smart00487 155 KLLPKNVQLLLLSATPPE 172 (201)
T ss_pred HhCCccceEEEEecCCch
Confidence 555678999999999973
|
|
| >PRK12899 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.1e-13 Score=170.19 Aligned_cols=127 Identities=19% Similarity=0.231 Sum_probs=101.9
Q ss_pred CCCcHHHHHHHHHHh-cCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHh---hcCC
Q 000384 44 FIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRV---HTDF 119 (1590)
Q Consensus 44 ~~pR~yQ~e~le~~~-~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~---~~~~ 119 (1590)
+.++|||.+++..+. ++++|+.++||+|||+++++++...+. .+ +.+++|+||+.|+.|.++.+.. ++|+
T Consensus 91 ~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL----~g--~~v~IVTpTrELA~Qdae~m~~L~k~lGL 164 (970)
T PRK12899 91 WDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNAL----TG--KPVHLVTVNDYLAQRDCEWVGSVLRWLGL 164 (970)
T ss_pred CCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHh----hc--CCeEEEeCCHHHHHHHHHHHHHHHhhcCC
Confidence 446999999998876 689999999999999999998775443 11 2388999999999998888776 4689
Q ss_pred ceEEEecCCCCCccchHHHHHhcCCCcEEEEcHHHH-HHHHHhcCcCcc-------ceeEEEEeccccccC
Q 000384 120 EVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQIL-LDALRKAFLSLD-------IVCFIVIDECHHATG 182 (1590)
Q Consensus 120 ~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L-~~~l~~~~~~l~-------~i~lII~DEaH~~~~ 182 (1590)
+++.++|+...... .... .++|+|+||+.| .++++.+.+.++ .+.++|+|||+.+.-
T Consensus 165 sV~~i~GG~~~~eq-----~~~y-~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADsmLi 229 (970)
T PRK12899 165 TTGVLVSGSPLEKR-----KEIY-QCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDSILI 229 (970)
T ss_pred eEEEEeCCCCHHHH-----HHHc-CCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhhhhh
Confidence 99999998765431 1222 689999999999 999988766555 458999999998853
|
|
| >KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1e-13 Score=162.85 Aligned_cols=325 Identities=18% Similarity=0.221 Sum_probs=198.9
Q ss_pred HHHHHHHHHhc-CCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhhcCCceEEEecC
Q 000384 49 YQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGA 127 (1590)
Q Consensus 49 yQ~e~le~~~~-~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~~~~v~~~~G~ 127 (1590)
.+.+++..+.. +-+||+++||||||.+-.-.+.+- .-...+.+-+..|.+.-+...++.+...++...+.-.|-
T Consensus 360 ~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~ed-----GY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGY 434 (1042)
T KOG0924|consen 360 CRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYED-----GYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGY 434 (1042)
T ss_pred HHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhc-----ccccCCeeeecCchHHHHHHHHHHHHHHhCCccccccce
Confidence 34445555554 446899999999998655444332 123455688888999988888888888776554443331
Q ss_pred CCCCccchHHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCCCc-HHHHHHHHHhcCCCCCcEEEE
Q 000384 128 KGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHP-YTKIMKEFYHKSDNKPKVFGM 206 (1590)
Q Consensus 128 ~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~~~-~~~im~~~~~~~~~~priLgL 206 (1590)
. +. .-+.--.+..|-+||.++|++..-.. -.+.+.++||+||||.-.-|.. .-.+++.... ....-+++.+
T Consensus 435 s-IR-----FEdvT~~~T~IkymTDGiLLrEsL~d-~~L~kYSviImDEAHERslNtDilfGllk~~la-rRrdlKliVt 506 (1042)
T KOG0924|consen 435 S-IR-----FEDVTSEDTKIKYMTDGILLRESLKD-RDLDKYSVIIMDEAHERSLNTDILFGLLKKVLA-RRRDLKLIVT 506 (1042)
T ss_pred E-EE-----eeecCCCceeEEEeccchHHHHHhhh-hhhhheeEEEechhhhcccchHHHHHHHHHHHH-hhccceEEEe
Confidence 1 00 00111135678899999998754322 2468899999999998765532 2233333222 2346789999
Q ss_pred eccCCccCCCCChhcHHHHHHHHHhhcC-CeeEeecchhhhhhcccCcceeeEeccCCCCcccchhhhHHHhhhhhhhhH
Q 000384 207 TASPVVRKGVSSAMDCEGQISELESTLD-SQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASL 285 (1590)
Q Consensus 207 TATP~~~~~~~~~~~~~~~i~~Le~~l~-~~i~~~~~~~~l~~~~~~p~~~~~~y~~~~~~~~~l~~~~~~~~~~~~~~~ 285 (1590)
|||.. ..++.+.++ +..+++.-|.- |. .+.|...+
T Consensus 507 SATm~--------------a~kf~nfFgn~p~f~IpGRTy-------PV--~~~~~k~p--------------------- 542 (1042)
T KOG0924|consen 507 SATMD--------------AQKFSNFFGNCPQFTIPGRTY-------PV--EIMYTKTP--------------------- 542 (1042)
T ss_pred ecccc--------------HHHHHHHhCCCceeeecCCcc-------ce--EEEeccCc---------------------
Confidence 99953 234444454 44444432210 10 01111110
Q ss_pred HHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHhHHHHHHHHhhhhHHHHHHHHHHH
Q 000384 286 SKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVL 365 (1590)
Q Consensus 286 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (1590)
+..|++..+
T Consensus 543 -----------------------------------------------------------------------~eDYVeaav 551 (1042)
T KOG0924|consen 543 -----------------------------------------------------------------------VEDYVEAAV 551 (1042)
T ss_pred -----------------------------------------------------------------------hHHHHHHHH
Confidence 011121111
Q ss_pred HHHhhhcCcchhhhccccCCccccccCCCCCHHHHHHHHHHHhcCCCCCcEEEEEEehHH----HHHHHHHHHhhCCCC-
Q 000384 366 HVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERII----AAKVVERFVKKVPFL- 440 (1590)
Q Consensus 366 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~----ta~~L~~~L~~~~~~- 440 (1590)
.+.- .+-. .....-++||..-.+ ++..+.+.|.++...
T Consensus 552 kq~v----------------------------------~Ihl---~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~ 594 (1042)
T KOG0924|consen 552 KQAV----------------------------------QIHL---SGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSAP 594 (1042)
T ss_pred hhhe----------------------------------Eeec---cCCCCCEEEecCCCcchhHHHHHHHHHHHhhhcCC
Confidence 1110 0000 012235788886554 455566655554322
Q ss_pred -CCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCceEEEEcccccccccCCCccEEEEccC------------------
Q 000384 441 -THLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDL------------------ 501 (1590)
Q Consensus 441 -~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fD~------------------ 501 (1590)
.++.+..+.+. |+...|.++++.-..|..+|+|||+++|..|.||++.+||.-+.
T Consensus 595 ~~~L~vlpiYSQ------Lp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~ 668 (1042)
T KOG0924|consen 595 TTDLAVLPIYSQ------LPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIV 668 (1042)
T ss_pred CCceEEEeehhh------CchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEE
Confidence 36778888887 89999999999999999999999999999999999999996332
Q ss_pred CCCHHHHHHHhccccccCceEEEEeccchHHhhhhhhcCChhh
Q 000384 502 PKTVSSYIQSRGRARQHNSQFILMLERSERSVTDTALSRDPEA 544 (1590)
Q Consensus 502 p~s~~~yiQr~GRA~R~gs~~ivlv~~~E~~~~~~~~~~~~~~ 544 (1590)
|-|-.+--||.|||||.|.+-++-++....++.++.....|+.
T Consensus 669 pIS~AnA~QRaGRAGRt~pG~cYRlYTe~ay~~eml~stvPEI 711 (1042)
T KOG0924|consen 669 PISQANADQRAGRAGRTGPGTCYRLYTEDAYKNEMLPSTVPEI 711 (1042)
T ss_pred echhccchhhccccCCCCCcceeeehhhhHHHhhcccCCCchh
Confidence 4456667899999999887755555555555555554444543
|
|
| >KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.58 E-value=9e-14 Score=163.42 Aligned_cols=322 Identities=17% Similarity=0.168 Sum_probs=199.3
Q ss_pred CCCCcHHHHHHHHHHhc-CCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhhcCCce
Q 000384 43 NFIPRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEV 121 (1590)
Q Consensus 43 ~~~pR~yQ~e~le~~~~-~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~~~~v 121 (1590)
.+.-.+|-.+++.++.. +-.||.++||||||.+.--.+.+..- ..+++++-+..|.+.-+...+..+....|.+.
T Consensus 263 sLPVy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGy----tk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkL 338 (902)
T KOG0923|consen 263 SLPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGY----TKGGKKIGCTQPRRVAAMSVAARVAEEMGVKL 338 (902)
T ss_pred cCCchhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhccc----ccCCceEeecCcchHHHHHHHHHHHHHhCccc
Confidence 34456777778887775 66789999999999865444433221 33455688899999999999999988887776
Q ss_pred EEEecCCCCCccchHHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCCC-cHHHHHHHHHhcCCCC
Q 000384 122 EEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNH-PYTKIMKEFYHKSDNK 200 (1590)
Q Consensus 122 ~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~~-~~~~im~~~~~~~~~~ 200 (1590)
+.-+|-. ...-+....+.-+-+||.++|++.+.. ...+...++||+||||.-.-.. -.-.+++..... .+.
T Consensus 339 G~eVGYs------IRFEdcTSekTvlKYMTDGmLlREfL~-epdLasYSViiiDEAHERTL~TDILfgLvKDIar~-Rpd 410 (902)
T KOG0923|consen 339 GHEVGYS------IRFEDCTSEKTVLKYMTDGMLLREFLS-EPDLASYSVIIVDEAHERTLHTDILFGLVKDIARF-RPD 410 (902)
T ss_pred ccccceE------EEeccccCcceeeeeecchhHHHHHhc-cccccceeEEEeehhhhhhhhhhHHHHHHHHHHhh-CCc
Confidence 5544421 111111223567789999999987754 3467889999999999764321 222333433222 356
Q ss_pred CcEEEEeccCCccCCCCChhcHHHHHHHHHhhcCC-eeEeecchhhhhhcccCcceeeEeccCCCCcccchhhhHHHhhh
Q 000384 201 PKVFGMTASPVVRKGVSSAMDCEGQISELESTLDS-QVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWS 279 (1590)
Q Consensus 201 priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~-~i~~~~~~~~l~~~~~~p~~~~~~y~~~~~~~~~l~~~~~~~~~ 279 (1590)
-+.|.+|||..- .+....+|. .++.+..+ --..-++|...+-
T Consensus 411 LKllIsSAT~DA--------------ekFS~fFDdapIF~iPGR---------RyPVdi~Yt~~PE-------------- 453 (902)
T KOG0923|consen 411 LKLLISSATMDA--------------EKFSAFFDDAPIFRIPGR---------RYPVDIFYTKAPE-------------- 453 (902)
T ss_pred ceEEeeccccCH--------------HHHHHhccCCcEEeccCc---------ccceeeecccCCc--------------
Confidence 788999999531 233333332 23322211 0011122322111
Q ss_pred hhhhhHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHhHHHHHHHHhhhhHHHHH
Q 000384 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKY 359 (1590)
Q Consensus 280 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (1590)
..
T Consensus 454 ------------------------------------------------------------------------------Ad 455 (902)
T KOG0923|consen 454 ------------------------------------------------------------------------------AD 455 (902)
T ss_pred ------------------------------------------------------------------------------hh
Confidence 00
Q ss_pred HHHHHHHHHhhhcCcchhhhccccCCccccccCCCCCHHHHHHHHHHHhcCCCCCcEEEEEEehHHHHH----HHHHHHh
Q 000384 360 FLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAK----VVERFVK 435 (1590)
Q Consensus 360 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~ta~----~L~~~L~ 435 (1590)
|++.....+-+ |. ...+..-+|||.---.... .|.+..+
T Consensus 456 YldAai~tVlq----------------------------------IH---~tqp~GDILVFltGQeEIEt~~e~l~~~~~ 498 (902)
T KOG0923|consen 456 YLDAAIVTVLQ----------------------------------IH---LTQPLGDILVFLTGQEEIETVKENLKERCR 498 (902)
T ss_pred HHHHHHhhhee----------------------------------eE---eccCCccEEEEeccHHHHHHHHHHHHHHHH
Confidence 11111111000 00 0011234777775544333 3444444
Q ss_pred hCC-CCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCceEEEEcccccccccCCCccEEEE--------ccC-----
Q 000384 436 KVP-FLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIR--------FDL----- 501 (1590)
Q Consensus 436 ~~~-~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~--------fD~----- 501 (1590)
.++ ....+.+..++.+ ++.+.|..+++.--.|..+|++||+++|..|.|+++++||. |++
T Consensus 499 ~LGski~eliv~PiYaN------LPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGme 572 (902)
T KOG0923|consen 499 RLGSKIRELIVLPIYAN------LPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGME 572 (902)
T ss_pred HhccccceEEEeecccc------CChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCce
Confidence 432 2345677778887 89999999999999999999999999999999999999995 332
Q ss_pred -----CCCHHHHHHHhccccccCceEEEEeccchHHhh
Q 000384 502 -----PKTVSSYIQSRGRARQHNSQFILMLERSERSVT 534 (1590)
Q Consensus 502 -----p~s~~~yiQr~GRA~R~gs~~ivlv~~~E~~~~ 534 (1590)
|-|-.+-.||.|||||.|.+-++-++....+..
T Consensus 573 sL~v~piSKAsA~QRaGRAGRtgPGKCfRLYt~~aY~~ 610 (902)
T KOG0923|consen 573 SLLVTPISKASANQRAGRAGRTGPGKCFRLYTAWAYEH 610 (902)
T ss_pred eEEEeeechhhhhhhccccCCCCCCceEEeechhhhhh
Confidence 446677899999999988876665555433333
|
|
| >PRK12900 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.9e-13 Score=172.34 Aligned_cols=129 Identities=10% Similarity=0.157 Sum_probs=108.7
Q ss_pred CHHHHHHHHHHHhcCCCCCcEEEEEEehHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCc
Q 000384 396 STKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKV 475 (1590)
Q Consensus 396 s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~ 475 (1590)
..|...+++.+.... ..+..+||||+++..++.|.++|.. .++....+|+. +.+|+..+.+|+.+..
T Consensus 581 ~eK~~Ali~~I~~~~-~~grpVLIft~Sve~sE~Ls~~L~~----~gI~h~vLnak--------q~~REa~Iia~AG~~g 647 (1025)
T PRK12900 581 REKYNAIVLKVEELQ-KKGQPVLVGTASVEVSETLSRMLRA----KRIAHNVLNAK--------QHDREAEIVAEAGQKG 647 (1025)
T ss_pred HHHHHHHHHHHHHHh-hCCCCEEEEeCcHHHHHHHHHHHHH----cCCCceeecCC--------HHHhHHHHHHhcCCCC
Confidence 468889999886654 3467899999999999999999998 57778888864 6788999999999999
Q ss_pred eEEEEcccccccccCC---Ccc-----EEEEccCCCCHHHHHHHhccccccCce--EEEEeccchHHhhhhh
Q 000384 476 NLLFATDVIEEGMHVP---NCS-----YVIRFDLPKTVSSYIQSRGRARQHNSQ--FILMLERSERSVTDTA 537 (1590)
Q Consensus 476 ~vLVaT~vleeGIDip---~~~-----~VI~fD~p~s~~~yiQr~GRA~R~gs~--~ivlv~~~E~~~~~~~ 537 (1590)
.|+|||+++++|+||+ .+. +||.++.|.|.+.|.|++||+||.|.. .+.++..++..|+.+.
T Consensus 648 ~VtIATNMAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~Lmr~f~ 719 (1025)
T PRK12900 648 AVTIATNMAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDELMRLFG 719 (1025)
T ss_pred eEEEeccCcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHHHHHhhC
Confidence 9999999999999999 443 359999999999999999999999864 6666666677776543
|
|
| >cd00046 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.6e-13 Score=142.71 Aligned_cols=142 Identities=26% Similarity=0.320 Sum_probs=108.8
Q ss_pred CCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhhcC--CceEEEecCCCCCccchHH
Q 000384 60 RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTD--FEVEEYYGAKGVDEWDSQC 137 (1590)
Q Consensus 60 ~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~~--~~v~~~~G~~~~d~~~~~~ 137 (1590)
+++++.++||+|||.+++.++.+... .+..+++++++|++.|+.|+.+.+..... ..+..+.+.... ...
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~----~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 72 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLD----SLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSI----KQQ 72 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHh----cccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcch----hHH
Confidence 47899999999999999999888765 23456799999999999999999999875 777777775432 223
Q ss_pred HHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCCCcHHHHHHHHHhcCCCCCcEEEEeccC
Q 000384 138 WQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASP 210 (1590)
Q Consensus 138 w~~~~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~~~~~~im~~~~~~~~~~priLgLTATP 210 (1590)
+.......+|+++|++.+...+.........+++||+||+|++.........+. ........+++++|||||
T Consensus 73 ~~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~-~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 73 EKLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLK-ILLKLPKDRQVLLLSATP 144 (144)
T ss_pred HHHhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHH-HHhhCCccceEEEEeccC
Confidence 344456899999999999888776555567889999999999976543333211 112235678999999998
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. |
| >PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.6e-14 Score=130.48 Aligned_cols=73 Identities=36% Similarity=0.651 Sum_probs=70.7
Q ss_pred CCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCceEEEEcccccccccCCCccEEEEccCCCCHHHHHHHhccccccC
Q 000384 441 THLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHN 519 (1590)
Q Consensus 441 ~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fD~p~s~~~yiQr~GRA~R~g 519 (1590)
.++.+..+||. ++.++|.++++.|++|+.++||||+++++|||+|.+++||+||+|+|+..|+|+.||++|.|
T Consensus 6 ~~~~~~~i~~~------~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 6 KGIKVAIIHGD------MSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp TTSSEEEESTT------SHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CCCcEEEEECC------CCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 57889999998 89999999999999999999999999999999999999999999999999999999999986
|
It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B .... |
| >TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.4e-12 Score=167.14 Aligned_cols=134 Identities=19% Similarity=0.214 Sum_probs=93.5
Q ss_pred CCCCCcHHHHHHHHHHh-----cCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHH-H---
Q 000384 42 INFIPRIYQLKVFEVAK-----RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYD-V--- 112 (1590)
Q Consensus 42 ~~~~pR~yQ~e~le~~~-----~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~-~--- 112 (1590)
..+++|+.|.++++.+. ++++++.+|||+|||+.+++++...+. .+++++|.+||++|..|+.. .
T Consensus 242 ~~~~~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~------~~~~vvi~t~t~~Lq~Ql~~~~~~~ 315 (850)
T TIGR01407 242 LGLEYRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI------TEKPVVISTNTKVLQSQLLEKDIPL 315 (850)
T ss_pred cCCccCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc------CCCeEEEEeCcHHHHHHHHHHHHHH
Confidence 56899999999877553 478899999999999999998765433 34579999999999999865 3
Q ss_pred HHhhcC--CceEEEecCCCC--------------C------------ccc-----------------hHHHHH-------
Q 000384 113 IRVHTD--FEVEEYYGAKGV--------------D------------EWD-----------------SQCWQK------- 140 (1590)
Q Consensus 113 i~~~~~--~~v~~~~G~~~~--------------d------------~~~-----------------~~~w~~------- 140 (1590)
+.+.++ +++..+.|..+. + .|- ...|..
T Consensus 316 l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~~~~~~~~~~i~~~~~l 395 (850)
T TIGR01407 316 LNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLKGGNKMFFAQVRHDGNL 395 (850)
T ss_pred HHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCCCcchhhHHHhhcCCCC
Confidence 344444 666666653310 0 010 011222
Q ss_pred -----------------hcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEecccccc
Q 000384 141 -----------------EINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHAT 181 (1590)
Q Consensus 141 -----------------~~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~ 181 (1590)
....++|+|+++.-|+..+.....-+.....+|||||||+.
T Consensus 396 ~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~ilp~~~~lIiDEAH~L~ 453 (850)
T TIGR01407 396 SKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPELFPSFRDLIIDEAHHLP 453 (850)
T ss_pred CCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhcccccCCCCCEEEEECcchHH
Confidence 12357999999999988764433223555799999999996
|
This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli. |
| >cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.3e-13 Score=136.55 Aligned_cols=114 Identities=36% Similarity=0.531 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHhcCCCCCcEEEEEEehHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCce
Q 000384 397 TKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVN 476 (1590)
Q Consensus 397 ~K~~~L~~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~~ 476 (1590)
.|...+.+++..... .+.++|||++++..++.+.+.|.. .+..+..++|. ++..+|..++++|++|...
T Consensus 12 ~k~~~i~~~i~~~~~-~~~~~lvf~~~~~~~~~~~~~l~~----~~~~~~~~~~~------~~~~~~~~~~~~f~~~~~~ 80 (131)
T cd00079 12 EKLEALLELLKEHLK-KGGKVLIFCPSKKMLDELAELLRK----PGIKVAALHGD------GSQEEREEVLKDFREGEIV 80 (131)
T ss_pred HHHHHHHHHHHhccc-CCCcEEEEeCcHHHHHHHHHHHHh----cCCcEEEEECC------CCHHHHHHHHHHHHcCCCc
Confidence 688888888876642 467899999999999999999987 46678899998 7899999999999999999
Q ss_pred EEEEcccccccccCCCccEEEEccCCCCHHHHHHHhccccccCce
Q 000384 477 LLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQ 521 (1590)
Q Consensus 477 vLVaT~vleeGIDip~~~~VI~fD~p~s~~~yiQr~GRA~R~gs~ 521 (1590)
+|++|+++++|+|+|.++.||.++.+++...|+|++||++|.|+.
T Consensus 81 ili~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~ 125 (131)
T cd00079 81 VLVATDVIARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQK 125 (131)
T ss_pred EEEEcChhhcCcChhhCCEEEEeCCCCCHHHheecccccccCCCC
Confidence 999999999999999999999999999999999999999999954
|
|
| >COG1110 Reverse gyrase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.8e-12 Score=156.20 Aligned_cols=134 Identities=23% Similarity=0.263 Sum_probs=94.4
Q ss_pred CCCCCcHHHHHHHHHHh-cCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhhc---
Q 000384 42 INFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT--- 117 (1590)
Q Consensus 42 ~~~~pR~yQ~e~le~~~-~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~--- 117 (1590)
..+.|+..|.-=..++. ++..-+.+|||.|||.-.++....+.. .++++++|+||..||.|.++.++++.
T Consensus 79 ~G~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~------kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~ 152 (1187)
T COG1110 79 TGFRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAK------KGKRVYIIVPTTTLVRQVYERLKKFAEDA 152 (1187)
T ss_pred hCCCchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHHh------cCCeEEEEecCHHHHHHHHHHHHHHHhhc
Confidence 45688888877555554 688999999999999755554433332 34779999999999999999999874
Q ss_pred C-CceEE-EecCCCCCccchHHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCC
Q 000384 118 D-FEVEE-YYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGN 183 (1590)
Q Consensus 118 ~-~~v~~-~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~ 183 (1590)
+ ..+.. |||...........-+-.-.+.+|+|+|.+-|...... +.-.++++|++|.++.+.+.
T Consensus 153 ~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~--L~~~kFdfifVDDVDA~Lka 218 (1187)
T COG1110 153 GSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEE--LSKLKFDFIFVDDVDAILKA 218 (1187)
T ss_pred CCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHH--hcccCCCEEEEccHHHHHhc
Confidence 2 33333 77776544322112222234799999999999765543 22247899999999988754
|
|
| >TIGR00596 rad1 DNA repair protein (rad1) | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.7e-11 Score=154.61 Aligned_cols=102 Identities=10% Similarity=0.109 Sum_probs=77.3
Q ss_pred CCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCCCcHHHHHHHHHhcCCCCCcEEEEeccCCccCCCCChhcHH
Q 000384 144 KNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCE 223 (1590)
Q Consensus 144 ~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~~~~~~im~~~~~~~~~~priLgLTATP~~~~~~~~~~~~~ 223 (1590)
...|+++||++|.+.+-.+.+.++++..|||||||++.+++.|.-|.+. |+..++.+.|.|+||+|..-.. + .
T Consensus 7 ~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rl-yr~~n~~gfIkafSdsP~~~~~-----g-~ 79 (814)
T TIGR00596 7 EGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRL-YRQKNKTGFIKAFSDNPEAFTM-----G-F 79 (814)
T ss_pred cCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHH-HHHhCCCcceEEecCCCccccc-----c-h
Confidence 6789999999999999999999999999999999999999999999875 5666678999999999985320 1 1
Q ss_pred HHHHHHHhhcCCe--eEeecchhhhhhcccC
Q 000384 224 GQISELESTLDSQ--VFTIEDKTEMEVFVPS 252 (1590)
Q Consensus 224 ~~i~~Le~~l~~~--i~~~~~~~~l~~~~~~ 252 (1590)
..+..+...|.-. ...+.....+..++..
T Consensus 80 ~~l~~vmk~L~i~~v~l~prf~~~V~~~l~~ 110 (814)
T TIGR00596 80 SPLETKMRNLFLRHVYLWPRFHVEVASSLEK 110 (814)
T ss_pred HHHHHHHHHhCcCeEEEeCCCchHHHHHhcc
Confidence 2344444544443 2223345566666665
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit |
| >PF14709 DND1_DSRM: double strand RNA binding domain from DEAD END PROTEIN 1 | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.9e-13 Score=121.55 Aligned_cols=73 Identities=32% Similarity=0.565 Sum_probs=66.6
Q ss_pred CchhhHHHHHHhCCCCCCceeEeecccccccccccCCcccccceeeEEEEEEEecCC---ceEEEeC--CCCCCccchhh
Q 000384 1495 GPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEF---GNVECNG--DPRADKKSSFD 1569 (1590)
Q Consensus 1495 ~~k~~L~e~~~~~~~~~P~y~~~~~~~~~~~~~~~Gp~h~~~~~~F~~~v~i~~~~~---~~~~~~g--~~~~sKK~A~~ 1569 (1590)
+|++.|+|+|++++|+.|.|++..+ .||+|. +.|+|+|+|.+... +.+.+.+ ++.++||+||+
T Consensus 2 ~a~~~L~elC~k~~W~~P~y~l~~~---------~Gp~~~---~~F~ykV~i~~~~~~~~~~~~~~~p~~~~~~~k~Ak~ 69 (80)
T PF14709_consen 2 SAVSLLNELCQKNKWGPPVYELVSE---------SGPDHR---KLFLYKVVIPGLEYPFEGSIECFGPTKPSSTKKEAKE 69 (80)
T ss_pred CHHHHHHHHHHhcCCCCCeEEEEec---------cCCCcc---EEEEEEEEEcCCCCCCcceEEEccCCCcCccHHHHHH
Confidence 5789999999999999999999977 899998 89999999998876 5677777 78899999999
Q ss_pred hHHHHHHHHH
Q 000384 1570 SAALIMLHEL 1579 (1590)
Q Consensus 1570 ~AA~~~l~~l 1579 (1590)
.||+.||+.|
T Consensus 70 ~AA~~~L~~L 79 (80)
T PF14709_consen 70 SAAQQALQAL 79 (80)
T ss_pred HHHHHHHHhc
Confidence 9999999987
|
|
| >PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.2e-12 Score=151.73 Aligned_cols=156 Identities=21% Similarity=0.234 Sum_probs=98.5
Q ss_pred HHHHHHHHHh--------------cCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHH
Q 000384 49 YQLKVFEVAK--------------RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIR 114 (1590)
Q Consensus 49 yQ~e~le~~~--------------~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~ 114 (1590)
||.+++.++. .+++|+++++|+|||++++.++..+.... .....+.+|||||. .+..||..++.
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~-~~~~~~~~LIv~P~-~l~~~W~~E~~ 78 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEF-PQRGEKKTLIVVPS-SLLSQWKEEIE 78 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCC-TTSS-S-EEEEE-T-TTHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhcc-ccccccceeEeecc-chhhhhhhhhc
Confidence 7999888763 15689999999999999999888665411 11122359999999 88899999999
Q ss_pred hhc---CCceEEEecCCCCCccchHHHHHhcCCCcEEEEcHHHHHHHH---HhcCcCccceeEEEEeccccccCCCcHHH
Q 000384 115 VHT---DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL---RKAFLSLDIVCFIVIDECHHATGNHPYTK 188 (1590)
Q Consensus 115 ~~~---~~~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l---~~~~~~l~~i~lII~DEaH~~~~~~~~~~ 188 (1590)
+++ .+++..+.|... ............+|+++|++.+.... ....+..-++++||+||+|.+++... .
T Consensus 79 ~~~~~~~~~v~~~~~~~~----~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~s--~ 152 (299)
T PF00176_consen 79 KWFDPDSLRVIIYDGDSE----RRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKDS--K 152 (299)
T ss_dssp HHSGT-TS-EEEESSSCH----HHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTTS--H
T ss_pred cccccccccccccccccc----cccccccccccceeeeccccccccccccccccccccccceeEEEecccccccccc--c
Confidence 998 467777776540 01111223457899999999998110 01112224599999999999964322 2
Q ss_pred HHHHHHhcCCCCCcEEEEeccCCccC
Q 000384 189 IMKEFYHKSDNKPKVFGMTASPVVRK 214 (1590)
Q Consensus 189 im~~~~~~~~~~priLgLTATP~~~~ 214 (1590)
..+.+.. . ..+++++|||||..++
T Consensus 153 ~~~~l~~-l-~~~~~~lLSgTP~~n~ 176 (299)
T PF00176_consen 153 RYKALRK-L-RARYRWLLSGTPIQNS 176 (299)
T ss_dssp HHHHHHC-C-CECEEEEE-SS-SSSG
T ss_pred ccccccc-c-ccceEEeecccccccc
Confidence 2222211 2 3688899999999875
|
g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W. |
| >PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.5e-11 Score=125.79 Aligned_cols=81 Identities=23% Similarity=0.297 Sum_probs=68.3
Q ss_pred ccccccccccCCchhhHHHHHHhCCCCCCceeEeecccccccccccCCcccccceeeEEEEEEEecCCceEEEeCCCCCC
Q 000384 1484 PVVAPINMKKGGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRAD 1563 (1590)
Q Consensus 1484 ~~~~~~~~~~~~~k~~L~e~~~~~~~~~P~y~~~~~~~~~~~~~~~Gp~h~~~~~~F~~~v~i~~~~~~~~~~~g~~~~s 1563 (1590)
|..--+.+...|||+.||||||+++... .|+++++ +||+|. +.|++.|.| .+...+.|.| +|
T Consensus 98 ~~~~i~~~k~~DpKS~LQE~~Q~~~~~l-~Y~li~~---------~GpdH~---~~Ftv~V~V----~g~~~g~G~G-~S 159 (183)
T PHA02701 98 TVSAVMRLKTLNPVSAVNEFCMRTHRPL-EFCETRS---------GGHDHC---PLFTCTIVV----SGKVVATASG-CS 159 (183)
T ss_pred cHHHhhcCCCCCccHHHHHHHHhcCCCC-eEEEEEe---------ECCCCC---ceEEEEEEE----CCEEEEEEEe-CC
Confidence 4555566677899999999999999888 8999888 899999 999999988 3556667777 66
Q ss_pred ccchhhhHHHHHHHHHHHc
Q 000384 1564 KKSSFDSAALIMLHELERQ 1582 (1590)
Q Consensus 1564 KK~A~~~AA~~~l~~l~~~ 1582 (1590)
||+|||.||+.||..|...
T Consensus 160 KKeAEQ~AAk~AL~~L~~~ 178 (183)
T PHA02701 160 KKLARHAACADALTILINN 178 (183)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 9999999999999998543
|
|
| >COG0571 Rnc dsRNA-specific ribonuclease [Transcription] | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.2e-11 Score=133.68 Aligned_cols=113 Identities=26% Similarity=0.378 Sum_probs=97.6
Q ss_pred CCCCCchhhhHHHHHHhceeecCCCChHHHHHHHHhhhccccCC---CCCCCChhhHHHHHHHhcCCcceee--eeeeCc
Q 000384 1309 SMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTP---DKLELPPLRELIELCDSLGYFVKEN--CTLKGE 1383 (1590)
Q Consensus 1309 ~~~~~k~l~D~~Ea~iGAi~lDsg~~~~~~~~~~~~~l~~~i~~---~~~~~~P~~~L~e~~~~~~~~~~~~--~~~~g~ 1383 (1590)
+...+++++|+|||+|||||+|+|+ +.+++|+.+++.+.+.. ....++|++.||||+|+.++..|.| +...|+
T Consensus 112 g~~~~silaD~~EAligAiylD~g~--~~~~~~i~~l~~~~~~~~~~~~~~~D~Kt~LQe~~q~~~~~~p~Y~~v~~~g~ 189 (235)
T COG0571 112 GRRRESILADAFEALIGAIYLDSGL--EAARKFILKLFLPRLEEIDAGDQFKDPKTRLQELLQAQGLVLPEYRLVKEEGP 189 (235)
T ss_pred CCCchhHHHHHHHHHHHHHHHhCCh--HHHHHHHHHHHHHHHhhccccccccChhHHHHHHHHhcCCCCCeEEEeeccCC
Confidence 3568999999999999999999995 99999999999888763 2223799999999999999988844 333465
Q ss_pred e--EEEEEEEEEcCeEEEEEEEeCCHHHHHHHHHHHHHHHhhh
Q 000384 1384 M--VHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEV 1424 (1590)
Q Consensus 1384 ~--~~~~~~v~~~g~~~~~~g~g~skk~Ak~~AA~~AL~~L~~ 1424 (1590)
. +.|++.|.++|. ..+.|.|+|||+|++.||++||+.|..
T Consensus 190 ~h~~~F~v~v~v~~~-~~g~G~G~skk~AEq~AA~~al~~l~~ 231 (235)
T COG0571 190 AHDKEFTVEVAVGGK-ELGTGKGRSKKEAEQAAAEQALKKLGV 231 (235)
T ss_pred CCCceEEEEEEECCe-eEEEecccCHHHHHHHHHHHHHHHhcc
Confidence 4 789999999995 899999999999999999999999876
|
|
| >smart00490 HELICc helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.4e-11 Score=114.84 Aligned_cols=80 Identities=40% Similarity=0.676 Sum_probs=73.7
Q ss_pred HHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCceEEEEcccccccccCCCccEEEEccCCCCHHHHH
Q 000384 430 VERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYI 509 (1590)
Q Consensus 430 L~~~L~~~~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fD~p~s~~~yi 509 (1590)
+.+.|.. .++.+..+||. ++.++|.++++.|++|...+||+|+++++|+|+|.++.||.+++|++...|.
T Consensus 3 l~~~l~~----~~~~~~~~~~~------~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~ 72 (82)
T smart00490 3 LAELLKE----LGIKVARLHGG------LSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYI 72 (82)
T ss_pred HHHHHHH----CCCeEEEEECC------CCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHH
Confidence 4556665 36788899998 8999999999999999999999999999999999999999999999999999
Q ss_pred HHhccccccC
Q 000384 510 QSRGRARQHN 519 (1590)
Q Consensus 510 Qr~GRA~R~g 519 (1590)
|++||++|.|
T Consensus 73 Q~~gR~~R~g 82 (82)
T smart00490 73 QRIGRAGRAG 82 (82)
T ss_pred HhhcccccCC
Confidence 9999999976
|
|
| >KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.6e-11 Score=141.52 Aligned_cols=103 Identities=20% Similarity=0.384 Sum_probs=83.3
Q ss_pred CCcEEEEEEehHHHHHHHHHHHhhCC-C-CCCe--eEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCceEEEEcccccccc
Q 000384 413 TQVLCIIFVERIIAAKVVERFVKKVP-F-LTHL--TVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGM 488 (1590)
Q Consensus 413 ~~~k~IIFv~~r~ta~~L~~~L~~~~-~-~~~~--~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~~vLVaT~vleeGI 488 (1590)
.+.|||-||..|..++.+..+.+.+. + .+++ .+..+.|+ ...++|+++...+-.|+..-+|||+++|.||
T Consensus 524 ~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGG------Y~A~DRRKIE~~~F~G~L~giIaTNALELGI 597 (1034)
T KOG4150|consen 524 HGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGG------YIAEDRRKIESDLFGGKLCGIIATNALELGI 597 (1034)
T ss_pred cCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCc------cchhhHHHHHHHhhCCeeeEEEecchhhhcc
Confidence 35799999999998887766554421 0 0111 11223343 7889999999999999999999999999999
Q ss_pred cCCCccEEEEccCCCCHHHHHHHhccccccCce
Q 000384 489 HVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQ 521 (1590)
Q Consensus 489 Dip~~~~VI~fD~p~s~~~yiQr~GRA~R~gs~ 521 (1590)
||...+.|+..+.|.|...+.|..|||||.+..
T Consensus 598 DIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~ 630 (1034)
T KOG4150|consen 598 DIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKP 630 (1034)
T ss_pred ccccceeEEEccCchhHHHHHHHhccccccCCC
Confidence 999999999999999999999999999997753
|
|
| >cd00048 DSRM Double-stranded RNA binding motif | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.6e-11 Score=110.06 Aligned_cols=68 Identities=28% Similarity=0.481 Sum_probs=59.5
Q ss_pred CchhhHHHHHHhCCCCCCceeEeecccccccccccCCcccccceeeEEEEEEEecCCceEEEeCCCCCCccchhhhHHHH
Q 000384 1495 GPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAALI 1574 (1590)
Q Consensus 1495 ~~k~~L~e~~~~~~~~~P~y~~~~~~~~~~~~~~~Gp~h~~~~~~F~~~v~i~~~~~~~~~~~g~~~~sKK~A~~~AA~~ 1574 (1590)
|||+.|+||||+++|..|.|+++.. +||+|. +.|+|.|.+. +...++|.| +|||+||+.||+.
T Consensus 1 ~p~~~L~e~~~~~~~~~~~y~~~~~---------~g~~~~---~~f~~~v~i~----~~~~~~g~g-~sKk~Ak~~AA~~ 63 (68)
T cd00048 1 NPKSLLQELAQKRGKPLPEYELVEE---------EGPDHA---PRFTVEVTVG----GKITGEGEG-SSKKEAKQNAAEA 63 (68)
T ss_pred ChHHHHHHHHHHcCCCCCeEEEeee---------eCCCCC---CeEEEEEEEC----CEEEEEeec-CCHHHHHHHHHHH
Confidence 6889999999999999999999776 799998 8999999883 456677777 5799999999999
Q ss_pred HHHHH
Q 000384 1575 MLHEL 1579 (1590)
Q Consensus 1575 ~l~~l 1579 (1590)
||..|
T Consensus 64 al~~L 68 (68)
T cd00048 64 ALRKL 68 (68)
T ss_pred HHHhC
Confidence 99865
|
Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases. |
| >PRK12326 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.5e-09 Score=132.25 Aligned_cols=127 Identities=17% Similarity=0.108 Sum_probs=91.8
Q ss_pred CCCCCcHHHHHHHHHHhcCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhh---cC
Q 000384 42 INFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVH---TD 118 (1590)
Q Consensus 42 ~~~~pR~yQ~e~le~~~~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~---~~ 118 (1590)
..+.|++.|.-..-.++ +.-|+.|.||.|||++|.+++..... .++.|-+++|+--|+.|-++.+... +|
T Consensus 75 lg~r~ydvQlig~l~Ll-~G~VaEM~TGEGKTLvA~l~a~l~AL------~G~~VhvvT~NdyLA~RDae~m~~ly~~LG 147 (764)
T PRK12326 75 LGLRPFDVQLLGALRLL-AGDVIEMATGEGKTLAGAIAAAGYAL------QGRRVHVITVNDYLARRDAEWMGPLYEALG 147 (764)
T ss_pred cCCCcchHHHHHHHHHh-CCCcccccCCCCHHHHHHHHHHHHHH------cCCCeEEEcCCHHHHHHHHHHHHHHHHhcC
Confidence 35677777877765544 45688999999999999997765443 3445899999999999988887764 68
Q ss_pred CceEEEecCCCCCccchHHHHHhcCCCcEEEEcHHHH-HHHHHhc------CcCccceeEEEEecccccc
Q 000384 119 FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQIL-LDALRKA------FLSLDIVCFIVIDECHHAT 181 (1590)
Q Consensus 119 ~~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L-~~~l~~~------~~~l~~i~lII~DEaH~~~ 181 (1590)
++|+.+.+++..+. ++..-.++|+.+|..-| .++|+.. ......+++.|+||++.+.
T Consensus 148 Lsvg~i~~~~~~~e------rr~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiL 211 (764)
T PRK12326 148 LTVGWITEESTPEE------RRAAYACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVL 211 (764)
T ss_pred CEEEEECCCCCHHH------HHHHHcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhhe
Confidence 99999988764332 22223689999998765 3333322 2234668899999999875
|
|
| >PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.9e-09 Score=140.13 Aligned_cols=132 Identities=15% Similarity=0.197 Sum_probs=93.6
Q ss_pred CCCCCcHHHHHHHHHHh-----cCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHH-HHH--
Q 000384 42 INFIPRIYQLKVFEVAK-----RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQY-DVI-- 113 (1590)
Q Consensus 42 ~~~~pR~yQ~e~le~~~-----~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~-~~i-- 113 (1590)
..++.|+-|.++.+.+. ++.+++.++||+|||+++++++.... .+.+++|++||++|.+|.. +.+
T Consensus 242 ~~~e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~-------~~~~vvI~t~T~~Lq~Ql~~~~i~~ 314 (820)
T PRK07246 242 LGLEERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS-------DQRQIIVSVPTKILQDQIMAEEVKA 314 (820)
T ss_pred CCCccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc-------CCCcEEEEeCcHHHHHHHHHHHHHH
Confidence 46899999999877764 37788999999999999999855431 2456999999999999983 444
Q ss_pred -HhhcCCceEEEecCCCC---------------C-----------cc-----------------chHHHHHh--------
Q 000384 114 -RVHTDFEVEEYYGAKGV---------------D-----------EW-----------------DSQCWQKE-------- 141 (1590)
Q Consensus 114 -~~~~~~~v~~~~G~~~~---------------d-----------~~-----------------~~~~w~~~-------- 141 (1590)
.+.+++++..+.|+.+. . .| ....|...
T Consensus 315 l~~~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~~~~~ 394 (820)
T PRK07246 315 IQEVFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDGNLSQ 394 (820)
T ss_pred HHHhcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccCCCCC
Confidence 44567777766653210 0 01 00113321
Q ss_pred ----------------cCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEecccccc
Q 000384 142 ----------------INKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHAT 181 (1590)
Q Consensus 142 ----------------~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~ 181 (1590)
...++|+|+++..|...+..+. .+...+.+|||||||+.
T Consensus 395 ~cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~-~~p~~~~lIiDEAH~l~ 449 (820)
T PRK07246 395 SSLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK-DFARNKVLVFDEAQKLM 449 (820)
T ss_pred CCCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc-CCCCCCEEEEECcchhH
Confidence 2357999999999888765443 24678999999999986
|
|
| >PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.2e-08 Score=136.96 Aligned_cols=135 Identities=19% Similarity=0.254 Sum_probs=93.9
Q ss_pred CCCCCcHHHHHHHHHHh-----cCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHH----H
Q 000384 42 INFIPRIYQLKVFEVAK-----RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYD----V 112 (1590)
Q Consensus 42 ~~~~pR~yQ~e~le~~~-----~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~----~ 112 (1590)
..+++|+-|.++.+.+. ++.++|.++||+|||+.+++++..... ..+++++|-++|++|-+|... .
T Consensus 254 ~~~e~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~~a~-----~~~~~vvIsT~T~~LQ~Ql~~kDiP~ 328 (928)
T PRK08074 254 PKYEKREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYLLPAAYFAK-----KKEEPVVISTYTIQLQQQLLEKDIPL 328 (928)
T ss_pred CCCcCCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHhh-----ccCCeEEEEcCCHHHHHHHHHhhHHH
Confidence 46899999999888764 377889999999999999998765443 245679999999999998755 3
Q ss_pred HHhhcC--CceEEEecCCCC--------------------------Ccc-----------------chHHHHH-------
Q 000384 113 IRVHTD--FEVEEYYGAKGV--------------------------DEW-----------------DSQCWQK------- 140 (1590)
Q Consensus 113 i~~~~~--~~v~~~~G~~~~--------------------------d~~-----------------~~~~w~~------- 140 (1590)
+++.++ +++..+.|..+. ..| ....|..
T Consensus 329 L~~~~~~~~~~~~lKGr~nYlcl~k~~~~l~~~~~~~~~~~~~~~ll~Wl~~T~tGD~dEl~~~~~~~~~w~~i~~~~~~ 408 (928)
T PRK08074 329 LQKIFPFPVEAALLKGRSHYLCLRKFEQALQEEDDNYDVALTKAQLLVWLTETETGDLDELNLPSGGKLLWNRIASDGES 408 (928)
T ss_pred HHHHcCCCceEEEEEcccccccHHHHHHHHhccCCCHHHHHHHHHHHHHHccCCCCCHHHccCCCCCcchHHHhhccCcc
Confidence 455554 455555442210 000 0001222
Q ss_pred -------------------hcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEecccccc
Q 000384 141 -------------------EINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHAT 181 (1590)
Q Consensus 141 -------------------~~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~ 181 (1590)
....++|+|+++..|+..+..+.--+...+.+|||||||+.
T Consensus 409 c~~~~cp~~~~Cf~~~ar~~a~~AdivItNHalLl~dl~~~~~ilp~~~~lViDEAH~l~ 468 (928)
T PRK08074 409 DGGKQSPWFSRCFYQRAKNRAKFADLVITNHALLLTDLTSEEPLLPSYEHIIIDEAHHFE 468 (928)
T ss_pred cCCCCCCcccccHHHHHHHHHhcCCEEEECHHHHHHHHhhhcccCCCCCeEEEECCchHH
Confidence 12457899999999988764333234567999999999985
|
|
| >PRK13103 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.9e-09 Score=136.64 Aligned_cols=126 Identities=20% Similarity=0.131 Sum_probs=91.9
Q ss_pred CCCCcHHHHHHHHHHhcCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhh---cCC
Q 000384 43 NFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVH---TDF 119 (1590)
Q Consensus 43 ~~~pR~yQ~e~le~~~~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~---~~~ 119 (1590)
...|++.|.-.- .++.+.-|..|.||.|||++|.+++..... .++.|-+++|+--|+.|.++.+..+ +|+
T Consensus 80 Gm~~ydVQliGg-~~Lh~G~iaEM~TGEGKTLvA~l~a~l~al------~G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl 152 (913)
T PRK13103 80 GMRHFDVQLIGG-MTLHEGKIAEMRTGEGKTLVGTLAVYLNAL------SGKGVHVVTVNDYLARRDANWMRPLYEFLGL 152 (913)
T ss_pred CCCcchhHHHhh-hHhccCccccccCCCCChHHHHHHHHHHHH------cCCCEEEEeCCHHHHHHHHHHHHHHhcccCC
Confidence 355566665432 345788899999999999999987765433 3445889999999999999988875 589
Q ss_pred ceEEEecCCCCCccchHHHHHhcCCCcEEEEcHHHH-HHHHHhcC------cCccceeEEEEecccccc
Q 000384 120 EVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQIL-LDALRKAF------LSLDIVCFIVIDECHHAT 181 (1590)
Q Consensus 120 ~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L-~~~l~~~~------~~l~~i~lII~DEaH~~~ 181 (1590)
+|+.+.|++.... ++..-.++|+++|..-| .++|+... .....++++|+||+|.+.
T Consensus 153 ~v~~i~~~~~~~e------rr~~Y~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiL 215 (913)
T PRK13103 153 SVGIVTPFQPPEE------KRAAYAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSIL 215 (913)
T ss_pred EEEEECCCCCHHH------HHHHhcCCEEEEcccccccchhhccceechhhhcccccceeEechhhhee
Confidence 9999988765432 22223489999999986 44444321 123778999999999985
|
|
| >cd02845 PAZ_piwi_like PAZ domain, Piwi_like subfamily | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.9e-11 Score=117.44 Aligned_cols=92 Identities=25% Similarity=0.384 Sum_probs=73.5
Q ss_pred ccccCcEEEeccCCceEEEEEecCCCCCCCCCCCCCCCCCchHHHHHhhhccccccCCCCceEEeeccCCccccccccCC
Q 000384 891 KNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVNFND 970 (1590)
Q Consensus 891 ~~l~~~vV~~~~~~~~y~v~~i~~d~~p~spf~~~~~~~~~ty~~yy~~k~~~~i~~~~QPlL~~~~~~~~~n~l~~~~~ 970 (1590)
..+.+.+|.++|+++.|.|.+|.++++|.+.|+.. ++...||.+||+++||+.|.+++||||++..-.+ +.
T Consensus 26 ~~l~g~~V~t~yn~k~Y~I~~I~~~~~p~s~F~~~-~~~~~S~~~Yy~~kY~i~I~~~~qPLL~~~~k~~--~~------ 96 (117)
T cd02845 26 KELIGSIVLTRYNNKTYRIDDIDFDKTPLSTFKKS-DGTEITFVEYYKKQYNIEITDLNQPLLVSRPKRR--DP------ 96 (117)
T ss_pred HHcCCCEEEEeeCCeEEEEeEecCCCCccccCcCC-CCCeeeHHHHHHHHcCCccccCCCCcEEeecccc--cc------
Confidence 45789999999999999999999999999999853 3346799999999999999999999999863321 00
Q ss_pred CCCCCCCCCCCCCCCCCCceeeeccccceecccc
Q 000384 971 GGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVP 1004 (1590)
Q Consensus 971 ~~~~~~~~~~~~~~~~~~~~~~l~pe~~~~~~~p 1004 (1590)
.......++||||+|.+..++
T Consensus 97 -------------~~~~~~~iyL~pElC~ltglt 117 (117)
T cd02845 97 -------------RGGEKEPIYLIPELCFLTGLT 117 (117)
T ss_pred -------------CCCCCcEEEEchHHhhhcCCC
Confidence 011233478999999988763
|
In multi-cellular organisms, the Piwi protein appears to be essential for the maintenance of germline stem cells. In the Drosophila male germline, Piwi was shown to be involved in the silencing of retrotransposons in the male gametes. The Piwi proteins share their domain architecture with other members of the argonaute family. The PAZ domain has been named after the proteins Piwi, Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might |
| >smart00358 DSRM Double-stranded RNA binding motif | Back alignment and domain information |
|---|
Probab=99.17 E-value=5e-11 Score=106.55 Aligned_cols=66 Identities=24% Similarity=0.382 Sum_probs=57.7
Q ss_pred chhhHHHHHHhCCCCCCceeEeecccccccccccCCcccccceeeEEEEEEEecCCceEEEeCCCCCCccchhhhHHHHH
Q 000384 1496 PRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAALIM 1575 (1590)
Q Consensus 1496 ~k~~L~e~~~~~~~~~P~y~~~~~~~~~~~~~~~Gp~h~~~~~~F~~~v~i~~~~~~~~~~~g~~~~sKK~A~~~AA~~~ 1575 (1590)
||+.|+||||+++| .|.|++... +||+|. +.|+|.|.+. +...+.|.| +|||.||+.||+.|
T Consensus 1 p~~~L~e~~~~~~~-~~~y~~~~~---------~g~~~~---~~f~~~v~i~----~~~~~~g~g-~sKk~Ak~~AA~~a 62 (67)
T smart00358 1 PKSLLQELAQKRGL-PPEYELVKE---------EGPDHA---PRFTVTVKVG----GEYTGEGEG-SSKKEAKQRAAEAA 62 (67)
T ss_pred CchHHHHHHHHCCC-CCEEEEEee---------eCCCCC---CcEEEEEEEC----CEEEEEecc-CCHHHHHHHHHHHH
Confidence 67999999999999 899999987 799998 8999999883 445666776 67999999999999
Q ss_pred HHHH
Q 000384 1576 LHEL 1579 (1590)
Q Consensus 1576 l~~l 1579 (1590)
|+.|
T Consensus 63 l~~L 66 (67)
T smart00358 63 LRSL 66 (67)
T ss_pred HHhc
Confidence 9977
|
|
| >PHA03103 double-strand RNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.6e-11 Score=123.60 Aligned_cols=78 Identities=17% Similarity=0.172 Sum_probs=64.0
Q ss_pred ccccccccCCchhhHHHHHHhCCCCCCceeEeecccccccccccCCcccccceeeEEEEEEEecCCceEEEeCCCCCCcc
Q 000384 1486 VAPINMKKGGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKK 1565 (1590)
Q Consensus 1486 ~~~~~~~~~~~k~~L~e~~~~~~~~~P~y~~~~~~~~~~~~~~~Gp~h~~~~~~F~~~v~i~~~~~~~~~~~g~~~~sKK 1565 (1590)
...++++..|||+.||||||+++... |..+.+ +||+|. +.|++.|.|. +...+.|.| +|||
T Consensus 101 ~k~~d~K~kNpKS~LQE~~Qk~~~~~--y~~i~~---------~Gp~H~---p~F~v~V~I~----g~~~g~G~G-~SKK 161 (183)
T PHA03103 101 KKIISWKDKNPCTVINEYCQITSRDW--SINITS---------SGPSHS---PTFTASVIIS----GIKFKPAIG-STKK 161 (183)
T ss_pred hhhhccccCChhHHHHHHHHHhCCCe--EEEEEe---------eCCCCC---ceEEEEEEEC----CEEEEEeee-CCHH
Confidence 33468888999999999999999874 656666 799999 9999999883 445566776 6699
Q ss_pred chhhhHHHHHHHHHHHc
Q 000384 1566 SSFDSAALIMLHELERQ 1582 (1590)
Q Consensus 1566 ~A~~~AA~~~l~~l~~~ 1582 (1590)
+|||.||+.||..|...
T Consensus 162 eAEQ~AAk~AL~~L~~~ 178 (183)
T PHA03103 162 EAKNNAAKLAMDKILNY 178 (183)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999999543
|
|
| >KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2e-10 Score=144.82 Aligned_cols=124 Identities=18% Similarity=0.149 Sum_probs=102.5
Q ss_pred CCHHHHHHHHHHHhcCCCCCcEEEEEEehHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCC
Q 000384 395 ISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGK 474 (1590)
Q Consensus 395 ~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~ 474 (1590)
.+.|+..++++|.........++|||++....+..+...+.. .++....+.|. |+.+.|.+++..|..+.
T Consensus 520 ~s~ki~~~~~~l~~~~~s~~~kiiifsq~~~~l~l~~~~l~~----~~~~~~~~~g~------~~~~~r~~s~~~~~~~~ 589 (674)
T KOG1001|consen 520 ESSKIYAFLKILQAKEMSEQPKIVIFSQLIWGLALVCLRLFF----KGFVFLRYDGE------MLMKIRTKSFTDFPCDP 589 (674)
T ss_pred hhhhhHHHHHHHhhccCCCCCceeeehhHHHHHHHhhhhhhh----cccccchhhhh------hHHHHHHhhhcccccCc
Confidence 477888888888643322224899999999999888877763 56777778888 89999999999999664
Q ss_pred --ceEEEEcccccccccCCCccEEEEccCCCCHHHHHHHhccccccCceEEEEecc
Q 000384 475 --VNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLER 528 (1590)
Q Consensus 475 --~~vLVaT~vleeGIDip~~~~VI~fD~p~s~~~yiQr~GRA~R~gs~~ivlv~~ 528 (1590)
.-.|++..++.-|+++..+++|++.|+-||+..--|.+-||+|.|+.--|.|.+
T Consensus 590 ~~~vll~Slkag~~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v~r 645 (674)
T KOG1001|consen 590 LVTALLMSLKAGKVGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKVSR 645 (674)
T ss_pred cHHHHHHHHHHhhhhhchhhhhHHHhhchhcChHHHHHHHHHHHHhcccceeeeee
Confidence 346788999999999999999999999999999999999999999975555533
|
|
| >KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.16 E-value=7.5e-10 Score=126.70 Aligned_cols=152 Identities=16% Similarity=0.089 Sum_probs=93.0
Q ss_pred cHHHHHHHHHHh-cCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhhcCCceEEEe
Q 000384 47 RIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYY 125 (1590)
Q Consensus 47 R~yQ~e~le~~~-~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~~~~v~~~~ 125 (1590)
+.|+.+-++... ++-++++++||||||...--+..+... ... +.|....|.+.-+.+.+..+...+++..+.-.
T Consensus 49 w~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~----~~~-~~v~CTQprrvaamsva~RVadEMDv~lG~EV 123 (699)
T KOG0925|consen 49 WEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYEL----SHL-TGVACTQPRRVAAMSVAQRVADEMDVTLGEEV 123 (699)
T ss_pred HHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHH----hhc-cceeecCchHHHHHHHHHHHHHHhccccchhc
Confidence 334444444443 355789999999999754433333221 111 34777889999999999988888877766655
Q ss_pred cCCCCCccchHHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEecccccc-CCCcHHHHHHHHHhcCCCCCcEE
Q 000384 126 GAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHAT-GNHPYTKIMKEFYHKSDNKPKVF 204 (1590)
Q Consensus 126 G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~-~~~~~~~im~~~~~~~~~~priL 204 (1590)
|-.- .. .+..-.+.-.-.||.++|++...... .+..+++||+||||.-. .......++++..... +.-+++
T Consensus 124 GysI-rf-----EdC~~~~T~Lky~tDgmLlrEams~p-~l~~y~viiLDeahERtlATDiLmGllk~v~~~r-pdLk~v 195 (699)
T KOG0925|consen 124 GYSI-RF-----EDCTSPNTLLKYCTDGMLLREAMSDP-LLGRYGVIILDEAHERTLATDILMGLLKEVVRNR-PDLKLV 195 (699)
T ss_pred cccc-cc-----cccCChhHHHHHhcchHHHHHHhhCc-ccccccEEEechhhhhhHHHHHHHHHHHHHHhhC-CCceEE
Confidence 5321 10 00000011223577777776554432 36889999999999754 2223445566554444 578999
Q ss_pred EEeccCC
Q 000384 205 GMTASPV 211 (1590)
Q Consensus 205 gLTATP~ 211 (1590)
.||||..
T Consensus 196 vmSatl~ 202 (699)
T KOG0925|consen 196 VMSATLD 202 (699)
T ss_pred Eeecccc
Confidence 9999964
|
|
| >PRK14873 primosome assembly protein PriA; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=2e-09 Score=137.06 Aligned_cols=135 Identities=10% Similarity=0.069 Sum_probs=102.0
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhhcC-CceEEEecCCCCCccchHHHHH
Q 000384 62 TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTD-FEVEEYYGAKGVDEWDSQCWQK 140 (1590)
Q Consensus 62 ~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~~-~~v~~~~G~~~~d~~~~~~w~~ 140 (1590)
.|..+-+|||||-+++-+|.+.+. .++.+|||+|.+.|+.|..+.|+..++ ..+..++++.+... ..+.|..
T Consensus 163 ~i~~~~~GSGKTevyl~~i~~~l~------~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~-R~~~w~~ 235 (665)
T PRK14873 163 AVWQALPGEDWARRLAAAAAATLR------AGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPAD-RYRRWLA 235 (665)
T ss_pred HHhhcCCCCcHHHHHHHHHHHHHH------cCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHH-HHHHHHH
Confidence 344444699999999999998877 455699999999999999999999997 88999999876543 5567887
Q ss_pred hcCC-CcEEEEcHHHHHHHHHhcCcCccceeEEEEecccccc---CCCcH-H-HHHHHHHhcCCCCCcEEEEeccCC
Q 000384 141 EINK-NDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHAT---GNHPY-T-KIMKEFYHKSDNKPKVFGMTASPV 211 (1590)
Q Consensus 141 ~~~~-~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~---~~~~~-~-~im~~~~~~~~~~priLgLTATP~ 211 (1590)
...+ .+|+|+|...+ |..+.++.|||+||-|... ...+| . +-+-. +........++.-||||.
T Consensus 236 ~~~G~~~IViGtRSAv-------FaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~-~Ra~~~~~~lvLgSaTPS 304 (665)
T PRK14873 236 VLRGQARVVVGTRSAV-------FAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVAL-LRAHQHGCALLIGGHART 304 (665)
T ss_pred HhCCCCcEEEEcceeE-------EeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHH-HHHHHcCCcEEEECCCCC
Confidence 7654 79999998765 7889999999999999754 22333 1 11221 122234566777799996
|
|
| >KOG3769 consensus Ribonuclease III domain proteins [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.6e-10 Score=122.07 Aligned_cols=204 Identities=24% Similarity=0.253 Sum_probs=155.1
Q ss_pred CCChHHHHHhhcCCCCC-------------------CCCCcchhhhhhhhhHhHHHHHHHHhhCCCCCcchhHHHHHHhh
Q 000384 1042 HIPSSLILEALTTLGCC-------------------ESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAV 1102 (1590)
Q Consensus 1042 ~~~~~lll~AlT~~s~~-------------------~~~n~ErLE~LGDs~Lk~~~s~~l~~~~p~~~eg~ls~~r~~~v 1102 (1590)
.++.+.++.|||.+|+. ...+|+-|--.|-.|+.+.++.||-++||..+|-.++.+-+.++
T Consensus 76 ~is~~~l~ka~t~~s~~~~~kv~~~~lg~~~~~~~~~~~~N~~L~~~Gk~~~~~~v~~~l~~kyPrlP~E~l~ai~n~ll 155 (333)
T KOG3769|consen 76 EISLSYLLKALTNLSFSYPEKVLRQQLGAETVAQVNPQYSNEELVEIGKQFLSFYVTEYLKCKYPRLPEEGLHAIVNGLL 155 (333)
T ss_pred cccHHHHHHHHhCccccchHHHhhhhhcchhhhhhcCCcchHHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHhh
Confidence 34578888888888762 23478999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHhCCCccccccccCCCCcccCCCccCCCCCCCCCCCCcccccCCCcccccccceecCCcCCCCccccccch
Q 000384 1103 CNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKT 1182 (1590)
Q Consensus 1103 ~N~~L~~~a~~~gl~~~i~~~~f~~~~w~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~ 1182 (1590)
+.+.|+.+|..+|+.++++++.|.+. + ....+++
T Consensus 156 ~ee~LahiAt~lGie~l~~seeFp~~-----~-----------------------------------------eisq~es 189 (333)
T KOG3769|consen 156 GEEVLAHIATHLGIEELGLSEEFPKV-----G-----------------------------------------EISQDES 189 (333)
T ss_pred hHHHHHHHHHHhhHHHHhhcccCCCc-----h-----------------------------------------hhhHHHH
Confidence 99999999999999999999987531 0 0012467
Q ss_pred hhhHHHHHHHHhhhccChhHHHHHHHHhCCCccccchhhhhhhhcccccccCCChHHHHHHHHHhCCccCCHHHHHHHHc
Q 000384 1183 IADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAIT 1262 (1590)
Q Consensus 1183 iAD~vEAliGA~~~~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~lgy~F~~~~LL~~AlT 1262 (1590)
.++++=||+|+.+...|+....+|+..=.
T Consensus 190 s~~aI~Al~~~~~~ek~~~~v~dFI~~qi--------------------------------------------------- 218 (333)
T KOG3769|consen 190 SRRAIGALLGSVGLEKGFNFVRDFINDQI--------------------------------------------------- 218 (333)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHh---------------------------------------------------
Confidence 77787777776666655544444331100
Q ss_pred cCCCCCCcchHHHHHHhcccChHHHHHHHHHHHcCCCCCCCCCCCCCCCCCchhhhHHHHHHhceeecCCCChHHHHHHH
Q 000384 1263 HASVQEFYCYQNLYKHLQHCSTLLLSQITEYVKSFPKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIF 1342 (1590)
Q Consensus 1263 H~S~~~~~~ye~L~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~l~D~~Ea~iGAi~lDsg~~~~~~~~~~ 1342 (1590)
++..++..+.|.
T Consensus 219 ------------------------------------------------------------------~~k~L~~~~m~q-- 230 (333)
T KOG3769|consen 219 ------------------------------------------------------------------LSKDLDPREMWQ-- 230 (333)
T ss_pred ------------------------------------------------------------------hhhccchHhhcc--
Confidence 000011111111
Q ss_pred HhhhccccCCCCCCCChhhHHHHHHHhcCCcce--eeeeeeCce---EEEEEEEEEcCeEEEEEEEeCCHHHHHHHHHHH
Q 000384 1343 KPILSPIVTPDKLELPPLRELIELCDSLGYFVK--ENCTLKGEM---VHAELRLQLKDVLLVGEGQERSRKAAKGKAASQ 1417 (1590)
Q Consensus 1343 ~~~l~~~i~~~~~~~~P~~~L~e~~~~~~~~~~--~~~~~~g~~---~~~~~~v~~~g~~~~~~g~g~skk~Ak~~AA~~ 1417 (1590)
+ .+|...|.++|++.+..-+ ....+.|+. +.|.|.+|.|.+ .+|.|.|.|-+.|+..||.+
T Consensus 231 ------l-------~~P~~~L~~lckr~~l~epe~Rll~esGr~S~~PvyvVgiYs~kk-llGqG~Gesl~~A~e~AA~d 296 (333)
T KOG3769|consen 231 ------L-------QWPRRLLSRLCKRRGLKEPESRLLAESGRNSAEPVYVVGIYSGKK-LLGQGQGESLKLAEEQAARD 296 (333)
T ss_pred ------c-------cchHHHHHHHHHHcCCCCchhHHHHHhccCccCceEEEEeecCch-hhccCcchHHHHHHHHHHHH
Confidence 1 4799999999999998765 334455654 789999999885 99999999999999999999
Q ss_pred HHHHhhh
Q 000384 1418 LLKKLEV 1424 (1590)
Q Consensus 1418 AL~~L~~ 1424 (1590)
||.++..
T Consensus 297 AL~k~y~ 303 (333)
T KOG3769|consen 297 ALIKLYD 303 (333)
T ss_pred HHHHHHc
Confidence 9999988
|
|
| >KOG3732 consensus Staufen and related double-stranded-RNA-binding proteins [Intracellular trafficking, secretion, and vesicular transport; Transcription] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.6e-10 Score=128.32 Aligned_cols=72 Identities=25% Similarity=0.365 Sum_probs=63.4
Q ss_pred CCchhhHHHHHHhCCCCCCceeEeecccccccccccCCcccccceeeEEEEEEEecCCceEEEeCCCCCCccchhhhHHH
Q 000384 1494 GGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAAL 1573 (1590)
Q Consensus 1494 ~~~k~~L~e~~~~~~~~~P~y~~~~~~~~~~~~~~~Gp~h~~~~~~F~~~v~i~~~~~~~~~~~g~~~~sKK~A~~~AA~ 1573 (1590)
+.|.+.|||+|.+++.+ |.|+|.++ +||+|. +.|+++|++ +.++++|+|++ ||.||+.||.
T Consensus 38 KS~IS~l~E~~~r~~~~-v~fevl~e---------eGp~H~---~~fv~rvtv-----g~~~a~GeG~s-KK~AKh~AA~ 98 (339)
T KOG3732|consen 38 KSPISLLQEYGLRRGLT-PVYEVLRE---------EGPPHM---PNFVFRVTV-----GEITATGEGKS-KKLAKHRAAE 98 (339)
T ss_pred CChHHHHHHHHHHhCCC-cceeeeec---------cCCccC---CCeEEEEEE-----eeeEEecCCCc-hhHHHHHHHH
Confidence 45669999999999984 59999998 999999 889999997 47899999955 9999999999
Q ss_pred HHHHHHHHcCe
Q 000384 1574 IMLHELERQGK 1584 (1590)
Q Consensus 1574 ~~l~~l~~~~~ 1584 (1590)
.||..|++.-.
T Consensus 99 ~~L~~lk~l~~ 109 (339)
T KOG3732|consen 99 ALLKELKKLPP 109 (339)
T ss_pred HHHHHHhcCCC
Confidence 99999987643
|
|
| >KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.6e-08 Score=120.96 Aligned_cols=103 Identities=18% Similarity=0.216 Sum_probs=82.4
Q ss_pred CCcEEEEEEehHHHHHHHHHHHhhC--CCCCC------------eeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCC---c
Q 000384 413 TQVLCIIFVERIIAAKVVERFVKKV--PFLTH------------LTVAYLTGSTTSVDALTPKVQKEVLESFRGGK---V 475 (1590)
Q Consensus 413 ~~~k~IIFv~~r~ta~~L~~~L~~~--~~~~~------------~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~---~ 475 (1590)
.+.++|||.+...+.+.|.++|.+. +.-.+ .....+.|. .+..+|++.+++|.+-. .
T Consensus 718 ~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~------t~a~~rekLinqfN~e~~lsW 791 (1387)
T KOG1016|consen 718 IGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGT------TSAADREKLINQFNSEPGLSW 791 (1387)
T ss_pred cCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCC------cccchHHHHHHhccCCCCcee
Confidence 4678999999999999999998764 11111 111223343 57789999999998642 2
Q ss_pred eEEEEcccccccccCCCccEEEEccCCCCHHHHHHHhccccccCce
Q 000384 476 NLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQ 521 (1590)
Q Consensus 476 ~vLVaT~vleeGIDip~~~~VI~fD~p~s~~~yiQr~GRA~R~gs~ 521 (1590)
-+|++|....-||++-..|-+|.||..|++.--.|.+-|+-|.|++
T Consensus 792 lfllstrag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~ 837 (1387)
T KOG1016|consen 792 LFLLSTRAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQ 837 (1387)
T ss_pred eeeehhccccccceeeccceEEEEEeecCccccchhhhhhhhhcCc
Confidence 4788999999999999999999999999999999999999999986
|
|
| >PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.7e-09 Score=107.67 Aligned_cols=131 Identities=23% Similarity=0.277 Sum_probs=79.7
Q ss_pred CCEEEEeCCCChHHHHHHH-HHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhhcCCceEEEecCCCCCccchHHH
Q 000384 60 RNTIAVLETGAGKTMIAVM-LIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCW 138 (1590)
Q Consensus 60 ~n~Ii~~~TGsGKTliail-li~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~~~~v~~~~G~~~~d~~~~~~w 138 (1590)
+-.+|-+.+|+|||.-.+- ++++-+. .+.++|+|.||++++....+.++. ..+..-... ..
T Consensus 5 ~~~~~d~hpGaGKTr~vlp~~~~~~i~------~~~rvLvL~PTRvva~em~~aL~~---~~~~~~t~~--~~------- 66 (148)
T PF07652_consen 5 ELTVLDLHPGAGKTRRVLPEIVREAIK------RRLRVLVLAPTRVVAEEMYEALKG---LPVRFHTNA--RM------- 66 (148)
T ss_dssp EEEEEE--TTSSTTTTHHHHHHHHHHH------TT--EEEEESSHHHHHHHHHHTTT---SSEEEESTT--SS-------
T ss_pred ceeEEecCCCCCCcccccHHHHHHHHH------ccCeEEEecccHHHHHHHHHHHhc---CCcccCcee--ee-------
Confidence 4468999999999985443 5555554 566799999999999888877763 332221111 10
Q ss_pred HHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCCCc--HHHHHHHHHhcCCCCCcEEEEeccCCc
Q 000384 139 QKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHP--YTKIMKEFYHKSDNKPKVFGMTASPVV 212 (1590)
Q Consensus 139 ~~~~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~~~--~~~im~~~~~~~~~~priLgLTATP~~ 212 (1590)
.....+.-|-|||+..+...+.. ...+.++++||+||||-.-. +. .+..+.++ ......+++.|||||--
T Consensus 67 ~~~~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~Dp-~sIA~rg~l~~~--~~~g~~~~i~mTATPPG 138 (148)
T PF07652_consen 67 RTHFGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFTDP-TSIAARGYLREL--AESGEAKVIFMTATPPG 138 (148)
T ss_dssp ----SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT--SH-HHHHHHHHHHHH--HHTTS-EEEEEESS-TT
T ss_pred ccccCCCcccccccHHHHHHhcC-cccccCccEEEEeccccCCH-HHHhhheeHHHh--hhccCeeEEEEeCCCCC
Confidence 12235678999999999887766 55678999999999998521 11 22233322 11234679999999863
|
The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A .... |
| >TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.7e-08 Score=127.22 Aligned_cols=160 Identities=16% Similarity=0.189 Sum_probs=95.6
Q ss_pred CcHHHHHHHHHHhc-------CC--EEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhh
Q 000384 46 PRIYQLKVFEVAKR-------RN--TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVH 116 (1590)
Q Consensus 46 pR~yQ~e~le~~~~-------~n--~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~ 116 (1590)
-..||-.+++.+.. +. ++-.+.||+|||+.=.-+|..+.. ...+-+..+---.+.|.-|.-+++++-
T Consensus 409 rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARImyaLsd----~~~g~RfsiALGLRTLTLQTGda~r~r 484 (1110)
T TIGR02562 409 RFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAMYALRD----DKQGARFAIALGLRSLTLQTGHALKTR 484 (1110)
T ss_pred CcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHHHHhCC----CCCCceEEEEccccceeccchHHHHHh
Confidence 35699999998752 22 466789999999987776666543 344446777778888888888888886
Q ss_pred cCC---ceEEEecCC----------------------CCCc------------cch-------HHHH------HhcCCCc
Q 000384 117 TDF---EVEEYYGAK----------------------GVDE------------WDS-------QCWQ------KEINKND 146 (1590)
Q Consensus 117 ~~~---~v~~~~G~~----------------------~~d~------------~~~-------~~w~------~~~~~~~ 146 (1590)
+++ ...++.|+. +.+. |.. ..|. ..+-...
T Consensus 485 L~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll~ap 564 (1110)
T TIGR02562 485 LNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLLAAP 564 (1110)
T ss_pred cCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhhcCC
Confidence 543 233343321 1000 110 0011 1112368
Q ss_pred EEEEcHHHHHHHHH--h-cCc--Cccc--eeEEEEeccccccCCCcHHHHHHHHHh-cCCCCCcEEEEeccCC
Q 000384 147 VLVMTPQILLDALR--K-AFL--SLDI--VCFIVIDECHHATGNHPYTKIMKEFYH-KSDNKPKVFGMTASPV 211 (1590)
Q Consensus 147 VlV~T~q~L~~~l~--~-~~~--~l~~--i~lII~DEaH~~~~~~~~~~im~~~~~-~~~~~priLgLTATP~ 211 (1590)
|+|+|+..++.... + +.. .+-. =+.|||||+|-+-.. .+..+.+ ++. ...-..+++.||||.-
T Consensus 565 v~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~-~~~~L~r-lL~w~~~lG~~VlLmSATLP 635 (1110)
T TIGR02562 565 VLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPE-DLPALLR-LVQLAGLLGSRVLLSSATLP 635 (1110)
T ss_pred eEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHH-HHHHHHH-HHHHHHHcCCCEEEEeCCCC
Confidence 99999999987652 2 111 1111 258999999987331 2222222 222 2234578999999954
|
The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc. |
| >KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.00 E-value=6.1e-09 Score=131.26 Aligned_cols=146 Identities=21% Similarity=0.290 Sum_probs=108.6
Q ss_pred cHHHHHHHHHHh--cCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHH----HHHHhhcCCc
Q 000384 47 RIYQLKVFEVAK--RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQY----DVIRVHTDFE 120 (1590)
Q Consensus 47 R~yQ~e~le~~~--~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~----~~i~~~~~~~ 120 (1590)
.+.|.+++.-.- +.|++|.+|+|||||.+|-+++.. .....++++++|.-+.+.-++ ..|...+|..
T Consensus 1145 n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~-------~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~ 1217 (1674)
T KOG0951|consen 1145 NPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR-------PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLR 1217 (1674)
T ss_pred CCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC-------CccceEEEEecchHHHHHHHHHHHHHhhccccCce
Confidence 667777777664 488999999999999999887654 345678999999987766544 4455556899
Q ss_pred eEEEecCCCCCccchHHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCCCc--H---HHHHHHHHh
Q 000384 121 VEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHP--Y---TKIMKEFYH 195 (1590)
Q Consensus 121 v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~~~--~---~~im~~~~~ 195 (1590)
+..+.|+.+.+. +.+...+|+++||+.+-.+ + ...++++.|.||.|...+.+. | .. |+..-.
T Consensus 1218 ~~~l~ge~s~~l-------kl~~~~~vii~tpe~~d~l-q----~iQ~v~l~i~d~lh~igg~~g~v~evi~S-~r~ia~ 1284 (1674)
T KOG0951|consen 1218 IVKLTGETSLDL-------KLLQKGQVIISTPEQWDLL-Q----SIQQVDLFIVDELHLIGGVYGAVYEVICS-MRYIAS 1284 (1674)
T ss_pred EEecCCccccch-------HHhhhcceEEechhHHHHH-h----hhhhcceEeeehhhhhcccCCceEEEEee-HHHHHH
Confidence 999999888774 5566889999999998554 3 467889999999999986432 1 11 333333
Q ss_pred cCCCCCcEEEEeccCCc
Q 000384 196 KSDNKPKVFGMTASPVV 212 (1590)
Q Consensus 196 ~~~~~priLgLTATP~~ 212 (1590)
+..+..|+++||-+..+
T Consensus 1285 q~~k~ir~v~ls~~lan 1301 (1674)
T KOG0951|consen 1285 QLEKKIRVVALSSSLAN 1301 (1674)
T ss_pred HHHhheeEEEeehhhcc
Confidence 34566788999877543
|
|
| >PRK12903 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.6e-07 Score=118.19 Aligned_cols=127 Identities=13% Similarity=0.193 Sum_probs=92.8
Q ss_pred CHHHHHHHHHHHhcCCCCCcEEEEEEehHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCC-C
Q 000384 396 STKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGG-K 474 (1590)
Q Consensus 396 s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g-~ 474 (1590)
..|..++++-+.... ..+..+||.|.+....+.|+++|.+ .++....+.... .+.=.+++. +.| .
T Consensus 409 ~~K~~Aii~ei~~~~-~~gqPVLVgT~SIe~SE~ls~~L~~----~gi~h~vLNAk~-------~e~EA~IIa--~AG~~ 474 (925)
T PRK12903 409 HAKWKAVVKEVKRVH-KKGQPILIGTAQVEDSETLHELLLE----ANIPHTVLNAKQ-------NAREAEIIA--KAGQK 474 (925)
T ss_pred HHHHHHHHHHHHHHH-hcCCCEEEEeCcHHHHHHHHHHHHH----CCCCceeecccc-------hhhHHHHHH--hCCCC
Confidence 578888887665544 3567899999999999999999998 466666666541 121123332 456 3
Q ss_pred ceEEEEcccccccccCCCcc--------EEEEccCCCCHHHHHHHhccccccCce--EEEEeccchHHhhhh
Q 000384 475 VNLLFATDVIEEGMHVPNCS--------YVIRFDLPKTVSSYIQSRGRARQHNSQ--FILMLERSERSVTDT 536 (1590)
Q Consensus 475 ~~vLVaT~vleeGIDip~~~--------~VI~fD~p~s~~~yiQr~GRA~R~gs~--~ivlv~~~E~~~~~~ 536 (1590)
-.|.|||+++++|-||.--. +||-...+.|-+---|-+|||||.|.. ..+++.-++..|+.+
T Consensus 475 GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~lSLeD~L~r~f 546 (925)
T PRK12903 475 GAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFISLDDQLFRRF 546 (925)
T ss_pred CeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEEEecchHHHHHh
Confidence 67999999999999997433 899999999999999999999998853 333333345566554
|
|
| >PF00035 dsrm: Double-stranded RNA binding motif; InterPro: IPR001159 The DsRBD domain is found in a variety of RNA-binding proteins with different structures and exhibiting a diversity of functions [] | Back alignment and domain information |
|---|
Probab=98.99 E-value=5.8e-10 Score=99.63 Aligned_cols=67 Identities=24% Similarity=0.404 Sum_probs=52.0
Q ss_pred chhhHHHHHHhCCCCCCceeEeecccccccccccCCcccccceeeEEEEEEEecCCceEEEeCCCCCCccchhhhHHHHH
Q 000384 1496 PRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAALIM 1575 (1590)
Q Consensus 1496 ~k~~L~e~~~~~~~~~P~y~~~~~~~~~~~~~~~Gp~h~~~~~~F~~~v~i~~~~~~~~~~~g~~~~sKK~A~~~AA~~~ 1575 (1590)
||+.|+|||+++++.+|.|.+... .|+.|. +.|+|+|.+ .+...+.|.| +|||+||+.||..|
T Consensus 1 ~~~~L~e~~~~~~~~~~~~~~~~~---------~~~~~~---~~f~~~~~i----~~~~~~~g~g-~sKk~Ak~~AA~~a 63 (67)
T PF00035_consen 1 PKSRLNEYCQKNKFPPPYYYIEEE---------GPSHHR---PRFICTVYI----DGKEYGEGEG-SSKKEAKQQAAKKA 63 (67)
T ss_dssp HHHHHHHHHHHCTSSEEEEEEEEE---------SSSSSS---EEEEEEEEE----TTEEEEEEEE-SSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCEEEEEEe---------CCCCCC---ceEEEEEEE----CCEEEeEecc-CCHHHHHHHHHHHH
Confidence 679999999999987766666654 344444 689988877 3455556666 57999999999999
Q ss_pred HHHH
Q 000384 1576 LHEL 1579 (1590)
Q Consensus 1576 l~~l 1579 (1590)
|+.|
T Consensus 64 l~~L 67 (67)
T PF00035_consen 64 LQKL 67 (67)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 9987
|
It is involved in localisation of at least five different mRNAs in the early Drosophila embryo and by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA.; GO: 0003725 double-stranded RNA binding, 0005622 intracellular; PDB: 1EKZ_A 1STU_A 1QU6_A 2L2M_A 3ADJ_A 1WHN_A 3LLH_B 2B7V_A 2L3J_A 1UHZ_A .... |
| >KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.99 E-value=6.9e-09 Score=121.30 Aligned_cols=94 Identities=27% Similarity=0.384 Sum_probs=73.6
Q ss_pred EEEEEehHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcC--CCceEEEEcccccccccCCCcc
Q 000384 417 CIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRG--GKVNLLFATDVIEEGMHVPNCS 494 (1590)
Q Consensus 417 ~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~--g~~~vLVaT~vleeGIDip~~~ 494 (1590)
|||-. +|...-.+...+.+. .+-++..+.|+ ++++.|..--..|.+ ++++|||||++.+.|+|+ +++
T Consensus 360 CvV~F-Skk~I~~~k~kIE~~---g~~k~aVIYGs------LPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~Ir 428 (700)
T KOG0953|consen 360 CVVAF-SKKDIFTVKKKIEKA---GNHKCAVIYGS------LPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIR 428 (700)
T ss_pred eEEEe-ehhhHHHHHHHHHHh---cCcceEEEecC------CCCchhHHHHHHhCCCCCccceEEeeccccccccc-cee
Confidence 54432 333444555556553 34568999998 899999888889987 899999999999999999 578
Q ss_pred EEEEccCC---------CCHHHHHHHhccccccCce
Q 000384 495 YVIRFDLP---------KTVSSYIQSRGRARQHNSQ 521 (1590)
Q Consensus 495 ~VI~fD~p---------~s~~~yiQr~GRA~R~gs~ 521 (1590)
-||.|+.. -+..+-.|-.|||||.|++
T Consensus 429 RiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~ 464 (700)
T KOG0953|consen 429 RIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSK 464 (700)
T ss_pred EEEEeecccCCcccceeccHHHHHHHhhcccccccC
Confidence 88888754 4778889999999999986
|
|
| >PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=5.3e-07 Score=117.59 Aligned_cols=64 Identities=30% Similarity=0.291 Sum_probs=51.4
Q ss_pred CCCCCcHHHHHHHHHHh----c------CCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHH
Q 000384 42 INFIPRIYQLKVFEVAK----R------RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQY 110 (1590)
Q Consensus 42 ~~~~pR~yQ~e~le~~~----~------~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~ 110 (1590)
..+++|+-|.++...+. + +.++|-|+||+|||+.+++++..... ..+++|+|-+.|++|=+|..
T Consensus 22 ~~~e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~-----~~~k~vVIST~T~~LQeQL~ 95 (697)
T PRK11747 22 PGFIPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIAR-----AEKKKLVISTATVALQEQLV 95 (697)
T ss_pred CCCCcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHH-----HcCCeEEEEcCCHHHHHHHH
Confidence 35899999999887764 2 45789999999999999998765443 24566999999999988764
|
|
| >COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.9e-08 Score=130.12 Aligned_cols=142 Identities=18% Similarity=0.261 Sum_probs=98.4
Q ss_pred CCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhhcCCceEEEecCCCCCccchHHHH
Q 000384 60 RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQ 139 (1590)
Q Consensus 60 ~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~~~~v~~~~G~~~~d~~~~~~w~ 139 (1590)
++.+|.--||||||+..+.+...+.+ ......|+|||.++.|-.|..++|........... ... +.+...
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~l~~----~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~-~~~-----s~~~Lk 343 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARLLLE----LPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP-KAE-----STSELK 343 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHHHHh----ccCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc-ccc-----CHHHHH
Confidence 46899999999999998887777665 25567799999999999999999998743222111 111 223333
Q ss_pred HhcC--CCcEEEEcHHHHHHHHHhcC--cCccceeEEEEeccccccCCCcHHHHHHHHHhcCCCCCcEEEEeccCCccCC
Q 000384 140 KEIN--KNDVLVMTPQILLDALRKAF--LSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKG 215 (1590)
Q Consensus 140 ~~~~--~~~VlV~T~q~L~~~l~~~~--~~l~~i~lII~DEaH~~~~~~~~~~im~~~~~~~~~~priLgLTATP~~~~~ 215 (1590)
..+. ...|+|+|.|.|-....... ..-.+--++|+||||+.-.. ..+..|+..+ +....+|+|+||+...+
T Consensus 344 ~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~G-~~~~~~~~~~----~~a~~~gFTGTPi~~~d 418 (962)
T COG0610 344 ELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQYG-ELAKLLKKAL----KKAIFIGFTGTPIFKED 418 (962)
T ss_pred HHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhcccc-HHHHHHHHHh----ccceEEEeeCCcccccc
Confidence 3333 35899999999988775541 11223348999999997532 3344444332 34778999999998764
Q ss_pred C
Q 000384 216 V 216 (1590)
Q Consensus 216 ~ 216 (1590)
.
T Consensus 419 ~ 419 (962)
T COG0610 419 K 419 (962)
T ss_pred c
Confidence 4
|
|
| >PF02170 PAZ: PAZ domain; InterPro: IPR003100 This domain is named after the proteins Piwi Argonaut and Zwille | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.1e-10 Score=115.07 Aligned_cols=106 Identities=33% Similarity=0.461 Sum_probs=87.1
Q ss_pred cccccCcEEEeccCC--ceEEEEEecCCCCCCCCCCCCCCCCCchHHHHHhhhccccccCCCCceEEeeccCCccccccc
Q 000384 890 AKNLKDMVVLAIHTG--RIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVN 967 (1590)
Q Consensus 890 ~~~l~~~vV~~~~~~--~~y~v~~i~~d~~p~spf~~~~~~~~~ty~~yy~~k~~~~i~~~~QPlL~~~~~~~~~n~l~~ 967 (1590)
.+.++|+.|.+.|++ +.|.|.+|.++.+|.+.|+.. ++...||++||.++||+.|.+|+||+|.+....+
T Consensus 26 ~~~lkg~~V~~~~~~~~r~~~I~~i~~~~~~~~~F~~~-~g~~itv~eYf~~~Y~i~L~~p~~Pll~~~~~~~------- 97 (135)
T PF02170_consen 26 ERALKGLKVTTTYNNNKRTYKIKGISFDPAPESTFPDN-DGKEITVAEYFKEKYNIRLKYPDLPLLNVKSKKK------- 97 (135)
T ss_dssp HHHHTTEEEEETTTTCCEEEEEEEEEEEETTTSEEEET-TSEEEEHHHHHHHTCT---SSTTSEEEEECSTTT-------
T ss_pred HHHcCCcEEEEecCCCceEEEEeEEECCCCcceeeecC-CCceEEhHHHHHhhhhcccccCCCCeEEeccCCC-------
Confidence 457899999999998 899999999999999999864 4578999999999999999999999999874331
Q ss_pred cCCCCCCCCCCCCCCCCCCCCceeeeccccceeccccHHHHHHHhhcHHHHHHHHH
Q 000384 968 FNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLES 1023 (1590)
Q Consensus 968 ~~~~~~~~~~~~~~~~~~~~~~~~~l~pe~~~~~~~p~~~~~~~~~lPsi~~rl~~ 1023 (1590)
...+++|||+|.+.+++...+......|++++|.+.
T Consensus 98 --------------------~~~~~lP~Elc~i~~~q~~~~~~~~~~~s~m~r~~~ 133 (135)
T PF02170_consen 98 --------------------KQPIYLPPELCFIVPGQRYKKKLFTCQPSIMIRFAC 133 (135)
T ss_dssp --------------------TTCEEEECCGEEEETTTBB-SS--HHHHHHHHHHHS
T ss_pred --------------------CceEEEChhHhcccCCcHHHHhccHHHHHHHHHHHh
Confidence 023579999999999999999999999999999864
|
It is also found in the CAF protein from Arabidopsis thaliana. The function of the domain is unknown but has been found in the middle region of a number of members of the Argonaute protein family, which also contain the Piwi domain (IPR003165 from INTERPRO) in their C-terminal region []. Several members of this family have been implicated in the development and maintenance of stem cells through the RNA-mediated gene-quelling mechanisms associated with the protein DICER. ; GO: 0005515 protein binding; PDB: 1R6Z_P 1T2R_A 1T2S_A 3MJ0_A 1VYN_A 3O3I_X 2L5C_A 3O6E_X 3O7V_X 2L5D_A .... |
| >TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.6e-08 Score=126.94 Aligned_cols=128 Identities=20% Similarity=0.231 Sum_probs=89.1
Q ss_pred HHHHHHHHh-----cCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhhc------C
Q 000384 50 QLKVFEVAK-----RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT------D 118 (1590)
Q Consensus 50 Q~e~le~~~-----~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~------~ 118 (1590)
|.++++.+. ++.+++.++||+|||+++++++...+. ...++++||++||++|..|+.+.+.... +
T Consensus 2 Q~~~~~~i~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~----~~~~~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~ 77 (636)
T TIGR03117 2 QALFYLNCLTSLRQKRIGMLEASTGVGKTLAMIMAALTMLK----ERPDQKIAIAVPTLALMGQLWSELERLTAEGLAGP 77 (636)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHH----hccCceEEEECCcHHHHHHHHHHHHHHHHhhcCCC
Confidence 777776653 367899999999999999998766543 1234679999999999999999877543 3
Q ss_pred CceEEEecCCCC---------------------Ccc----------------------------------------c---
Q 000384 119 FEVEEYYGAKGV---------------------DEW----------------------------------------D--- 134 (1590)
Q Consensus 119 ~~v~~~~G~~~~---------------------d~~----------------------------------------~--- 134 (1590)
+++..+.|..+. ..| .
T Consensus 78 i~~~~lkGr~nYlCl~rl~~~l~~~~~~~~~~i~~W~~~T~~~~~~~~~~~~~~~~~~~~~~~tGD~~el~~~~~~~~~~ 157 (636)
T TIGR03117 78 VQAGFFPGSQEFVSPGALQELLDQSGYDKDPAVQLWIGQGGPLIHEAALIRCMSDAPTKMHWMTHDLKAVATLLNRQDDV 157 (636)
T ss_pred eeEEEEECCcccccHHHHHHHhcccchhHHHHHHHHHhcCCccccccchhccccchhhccCCCCCCHhhccCCcCcchhh
Confidence 445554442210 000 0
Q ss_pred ------------hHHHHHh---cCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEecccccc
Q 000384 135 ------------SQCWQKE---INKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHAT 181 (1590)
Q Consensus 135 ------------~~~w~~~---~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~ 181 (1590)
....+.. ...++|+|+++..|...+..+.-.+...+.+|||||||+.
T Consensus 158 ~~~~~~~~~~~~~~~aR~~~~~a~~AdivItNHalL~~~~~~~~~iLP~~~~lIiDEAH~L~ 219 (636)
T TIGR03117 158 TLAIREDDEDKRLVESREYEAEARRCRILFCTHAMLGLAFRDKWGLLPQPDILIVDEAHLFE 219 (636)
T ss_pred hccccCCCcccHHHHHHHHhhccccCCEEEECHHHHHHHhhhhcCCCCCCCEEEEeCCcchH
Confidence 0011111 4678999999999988765543345668999999999985
|
Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome. |
| >PF14622 Ribonucleas_3_3: Ribonuclease-III-like; PDB: 1O0W_A 2A11_A 3N3W_B | Back alignment and domain information |
|---|
Probab=98.82 E-value=5.4e-10 Score=113.33 Aligned_cols=93 Identities=18% Similarity=0.280 Sum_probs=60.1
Q ss_pred CHHHHHHHHccCCCCC--CcchH----------------HHHHHhcccChHHHHHHHHHHHc----------CCCCCCC-
Q 000384 1253 VKFLLQEAITHASVQE--FYCYQ----------------NLYKHLQHCSTLLLSQITEYVKS----------FPKPGET- 1303 (1590)
Q Consensus 1253 ~~~LL~~AlTH~S~~~--~~~ye----------------~L~~~~~~~~~~~~~~i~~~~~~----------~~~~~~~- 1303 (1590)
|+.||.+||||+||.+ ..+|| +||+..+. +++.++..+.-++. ..-....
T Consensus 1 ~~~Ll~~alTH~S~~~~~~~~nerLefLGd~vL~~~vs~~l~~~~~~-~~g~l~~~~~~lv~~~~La~~a~~lgL~~~i~ 79 (128)
T PF14622_consen 1 DDELLLQALTHKSYAHERKPNNERLEFLGDAVLGLVVSEYLFQRPPA-DEGELTRLRSNLVSNETLAEIAKQLGLDKLIR 79 (128)
T ss_dssp SHHHHHHHTB-HHHHHHTCB-SHHHHHHHHHHHHHHHHHHHHHHTTT-SCHHHHHHHHHHHSHHHHHHHHHHTTCGGC-B
T ss_pred CHHHHHHHhcCccccccccCccHHHHHHHHHHHHHHHHHHHHhCcCc-cchHHHHHHHHHhChHHHHHHHHHCCHHHHHH
Confidence 6899999999999974 67898 66777555 66777655533333 1000000
Q ss_pred -C---CCCCCCCCCchhhhHHHHHHhceeecCCCChHHHHHHHHhhhcc
Q 000384 1304 -T---DSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSP 1348 (1590)
Q Consensus 1304 -~---~~~~~~~~~k~l~D~~Ea~iGAi~lDsg~~~~~~~~~~~~~l~~ 1348 (1590)
. ........+|+++|+|||+|||||+|+|+ +.+.+|+...+-|
T Consensus 80 ~~~~~~~~~~~~~~~vlad~feAliGAiyld~G~--~~a~~~i~~~i~~ 126 (128)
T PF14622_consen 80 WGPGEEKSGGSGSDKVLADVFEALIGAIYLDSGF--EAARKFIQKLILP 126 (128)
T ss_dssp --HHHHHTTGGG-HHHHHHHHHHHHHHHHHHH-H--HHHHHHHHHHH--
T ss_pred hCccHhhcCCCCCccHHHhHHHHHHHHHHHHcCH--HHHHHHHHHHhcc
Confidence 0 00123456899999999999999999999 7888888776654
|
|
| >COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.2e-06 Score=112.88 Aligned_cols=70 Identities=23% Similarity=0.144 Sum_probs=56.2
Q ss_pred CCCCCCcHHHHHHHHHHh----c-CCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHh
Q 000384 41 SINFIPRIYQLKVFEVAK----R-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRV 115 (1590)
Q Consensus 41 ~~~~~pR~yQ~e~le~~~----~-~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~ 115 (1590)
-..+++|+.|.++.+.+. + +.+++.+|||+|||+.+++++..... ..++.+++.++|+.|-+|..++...
T Consensus 11 ~~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~-----~~~~~viist~t~~lq~q~~~~~~~ 85 (654)
T COG1199 11 FPGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAR-----EEGKKVIISTRTKALQEQLLEEDLP 85 (654)
T ss_pred CCCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHH-----HcCCcEEEECCCHHHHHHHHHhhcc
Confidence 457899999999998764 2 55999999999999999998777654 2336699999999998887766544
|
|
| >CHL00122 secA preprotein translocase subunit SecA; Validated | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.9e-07 Score=116.72 Aligned_cols=127 Identities=20% Similarity=0.152 Sum_probs=88.5
Q ss_pred CCCCCcHHHHHHHHHHhcCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHH---HhhcC
Q 000384 42 INFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVI---RVHTD 118 (1590)
Q Consensus 42 ~~~~pR~yQ~e~le~~~~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i---~~~~~ 118 (1590)
..+.|++.|.-.. .++.++-|+.|.||-|||++|.+++.-... .++.|-+++++.-|+.+-++.+ -+++|
T Consensus 73 lG~r~ydvQlig~-l~L~~G~IaEm~TGEGKTL~a~l~ayl~aL------~G~~VhVvT~NdyLA~RD~e~m~pvy~~LG 145 (870)
T CHL00122 73 LGLRHFDVQLIGG-LVLNDGKIAEMKTGEGKTLVATLPAYLNAL------TGKGVHIVTVNDYLAKRDQEWMGQIYRFLG 145 (870)
T ss_pred hCCCCCchHhhhh-HhhcCCccccccCCCCchHHHHHHHHHHHh------cCCceEEEeCCHHHHHHHHHHHHHHHHHcC
Confidence 3456677776653 245788999999999999999987743222 2444888999999998766554 45689
Q ss_pred CceEEEecCCCCCccchHHHHHhcCCCcEEEEcHHHH-HHHHHhcC------cCccceeEEEEecccccc
Q 000384 119 FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQIL-LDALRKAF------LSLDIVCFIVIDECHHAT 181 (1590)
Q Consensus 119 ~~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L-~~~l~~~~------~~l~~i~lII~DEaH~~~ 181 (1590)
+.|+.+.+++.... ++..=.++|+.+|..-| .+.|+... .....+++.|+||++.+.
T Consensus 146 Lsvg~i~~~~~~~e------rr~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiL 209 (870)
T CHL00122 146 LTVGLIQEGMSSEE------RKKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSIL 209 (870)
T ss_pred CceeeeCCCCChHH------HHHhcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhhe
Confidence 99999887665432 22223579999998755 23333221 234668899999999875
|
|
| >smart00488 DEXDc2 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=98.74 E-value=9.2e-08 Score=111.38 Aligned_cols=75 Identities=23% Similarity=0.255 Sum_probs=56.1
Q ss_pred CCCCCcHHHHHHHHHHh-----cCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhh
Q 000384 42 INFIPRIYQLKVFEVAK-----RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVH 116 (1590)
Q Consensus 42 ~~~~pR~yQ~e~le~~~-----~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~ 116 (1590)
..|+||+.|.++++.+. ++++|+.+|||+|||+.+++++...+.......+..+++|.++|..+..|...++++.
T Consensus 5 FPy~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 5 FPYEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 46789999999887764 4889999999999999999977654431111101236999999999988877766654
|
|
| >smart00489 DEXDc3 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=98.74 E-value=9.2e-08 Score=111.38 Aligned_cols=75 Identities=23% Similarity=0.255 Sum_probs=56.1
Q ss_pred CCCCCcHHHHHHHHHHh-----cCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhh
Q 000384 42 INFIPRIYQLKVFEVAK-----RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVH 116 (1590)
Q Consensus 42 ~~~~pR~yQ~e~le~~~-----~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~ 116 (1590)
..|+||+.|.++++.+. ++++|+.+|||+|||+.+++++...+.......+..+++|.++|..+..|...++++.
T Consensus 5 FPy~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 5 FPYEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 46789999999887764 4889999999999999999977654431111101236999999999988877766654
|
|
| >smart00535 RIBOc Ribonuclease III family | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.6e-08 Score=103.53 Aligned_cols=94 Identities=27% Similarity=0.362 Sum_probs=68.2
Q ss_pred HHHHHHHccCCCCCC-cchH----------------HHHHHhcccChHHHHHHHHHHHcCCCC---------------CC
Q 000384 1255 FLLQEAITHASVQEF-YCYQ----------------NLYKHLQHCSTLLLSQITEYVKSFPKP---------------GE 1302 (1590)
Q Consensus 1255 ~LL~~AlTH~S~~~~-~~ye----------------~L~~~~~~~~~~~~~~i~~~~~~~~~~---------------~~ 1302 (1590)
.||.+||||+||... .+|| +++..+|..+++.++.+...+..-... ..
T Consensus 1 ~ll~~alth~s~~~~~~~~e~Le~lGd~vl~~~v~~~l~~~~p~~~~~~l~~~~~~lvsn~~la~~a~~~~l~~~i~~~~ 80 (129)
T smart00535 1 SLLLRALTHASYSNEHEHNERLEFLGDAVLELVVTEYLYKKYPDLSEGDLSRLRSALVSNETLARLAKKLGLGEFIRLGR 80 (129)
T ss_pred CHHHHHhhcccccccCcchHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHCHHHHHHHHHHCCcHHHHccCc
Confidence 379999999999873 4888 778888988888777655544430000 00
Q ss_pred CCCCCCCCCCCchhhhHHHHHHhceeecCCCChHHHHHHHHhhhcccc
Q 000384 1303 TTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIV 1350 (1590)
Q Consensus 1303 ~~~~~~~~~~~k~l~D~~Ea~iGAi~lDsg~~~~~~~~~~~~~l~~~i 1350 (1590)
..........+|+++|+|||+|||||+|+|+ +.+++++..++.|.+
T Consensus 81 ~~~~~~~~~~~k~~a~~~eAliGAi~ld~g~--~~~~~~i~~~~~~~~ 126 (129)
T smart00535 81 GEAISGGRDKPSILADVFEALIGAIYLDSGL--EAAREFIRDLLGPRL 126 (129)
T ss_pred hHhhcCCcccchHHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHh
Confidence 0000112357899999999999999999986 899999988887765
|
|
| >PHA03103 double-strand RNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.1e-07 Score=98.75 Aligned_cols=68 Identities=18% Similarity=0.140 Sum_probs=58.6
Q ss_pred CCChhhHHHHHHHhcCCcceeeeeeeCce--EEEEEEEEEcCeEEEEEEEeCCHHHHHHHHHHHHHHHhhh
Q 000384 1356 ELPPLRELIELCDSLGYFVKENCTLKGEM--VHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEV 1424 (1590)
Q Consensus 1356 ~~~P~~~L~e~~~~~~~~~~~~~~~~g~~--~~~~~~v~~~g~~~~~~g~g~skk~Ak~~AA~~AL~~L~~ 1424 (1590)
.+||++.||||||+.+....+.....|+. +.|++.|.++|. ..+.|.|.|||+|++.||+.||..|..
T Consensus 108 ~kNpKS~LQE~~Qk~~~~~y~~i~~~Gp~H~p~F~v~V~I~g~-~~g~G~G~SKKeAEQ~AAk~AL~~L~~ 177 (183)
T PHA03103 108 DKNPCTVINEYCQITSRDWSINITSSGPSHSPTFTASVIISGI-KFKPAIGSTKKEAKNNAAKLAMDKILN 177 (183)
T ss_pred cCChhHHHHHHHHHhCCCeEEEEEeeCCCCCceEEEEEEECCE-EEEEeeeCCHHHHHHHHHHHHHHHHHh
Confidence 36999999999999876654344456765 789999999997 888999999999999999999999976
|
|
| >PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.1e-07 Score=97.93 Aligned_cols=67 Identities=18% Similarity=0.121 Sum_probs=57.8
Q ss_pred CChhhHHHHHHHhcCCcceeee-eeeCce--EEEEEEEEEcCeEEEEEEEeCCHHHHHHHHHHHHHHHhhh
Q 000384 1357 LPPLRELIELCDSLGYFVKENC-TLKGEM--VHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEV 1424 (1590)
Q Consensus 1357 ~~P~~~L~e~~~~~~~~~~~~~-~~~g~~--~~~~~~v~~~g~~~~~~g~g~skk~Ak~~AA~~AL~~L~~ 1424 (1590)
.|||+.||||||+.+....+.. ...|+. +.|++.|.++|. ..+.|.|.|||+|++.||+.||+.|..
T Consensus 108 ~DpKS~LQE~~Q~~~~~l~Y~li~~~GpdH~~~Ftv~V~V~g~-~~g~G~G~SKKeAEQ~AAk~AL~~L~~ 177 (183)
T PHA02701 108 LNPVSAVNEFCMRTHRPLEFCETRSGGHDHCPLFTCTIVVSGK-VVATASGCSKKLARHAACADALTILIN 177 (183)
T ss_pred CCccHHHHHHHHhcCCCCeEEEEEeECCCCCceEEEEEEECCE-EEEEEEeCCHHHHHHHHHHHHHHHHHh
Confidence 6999999999999887665433 345665 789999999987 899999999999999999999999876
|
|
| >cd00593 RIBOc RIBOc | Back alignment and domain information |
|---|
Probab=98.63 E-value=3e-08 Score=102.14 Aligned_cols=96 Identities=24% Similarity=0.383 Sum_probs=70.2
Q ss_pred HHHHHHHccCCCCCC---cchH----------------HHHHHhcccChHHHHHHHHHHHcCCC---------CC----C
Q 000384 1255 FLLQEAITHASVQEF---YCYQ----------------NLYKHLQHCSTLLLSQITEYVKSFPK---------PG----E 1302 (1590)
Q Consensus 1255 ~LL~~AlTH~S~~~~---~~ye----------------~L~~~~~~~~~~~~~~i~~~~~~~~~---------~~----~ 1302 (1590)
.||.+||||+|+... .+|| +|+..++..+++.++.+...+..-.. .. .
T Consensus 1 ~ll~~alth~s~~~~~~~~~~e~Le~lGdavl~~~~~~~l~~~~~~~~~~~l~~~~~~~v~n~~l~~~a~~~gl~~~i~~ 80 (133)
T cd00593 1 SLLLEALTHPSYANEHGRFNNERLEFLGDAVLELVVTEYLFKKFPDLSEGDLTRLRSALVSNETLARLARELGLGKYLRL 80 (133)
T ss_pred CHHHHhhcCccccccCCCcchHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHCHHHHHHHHHHcCcHHHhcc
Confidence 378999999999873 6888 67788888888887766655544000 00 0
Q ss_pred C--CCCCCCCCCCchhhhHHHHHHhceeecCCCChHHHHHHHHhhhccccCC
Q 000384 1303 T--TDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTP 1352 (1590)
Q Consensus 1303 ~--~~~~~~~~~~k~l~D~~Ea~iGAi~lDsg~~~~~~~~~~~~~l~~~i~~ 1352 (1590)
. .........+|+++|+|||+|||||+|+|. +.+++++..++.+.+..
T Consensus 81 ~~~~~~~~~~~~~k~~ad~~eAliGAiyld~g~--~~~~~~i~~~~~~~~~~ 130 (133)
T cd00593 81 GKGEEKSGGRLRPKILADVFEALIGAIYLDGGF--EAARKFLLRLLGPLIEE 130 (133)
T ss_pred CchHhhcCCcccccHHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHhh
Confidence 0 000113568999999999999999999998 88999999888776643
|
Ribonuclease III C terminal domain. This group consists of eukaryotic, bacterial and archeal ribonuclease III (RNAse III) proteins. RNAse III is a double stranded RNA-specific endonuclease. Prokaryotic RNAse III is important in post-transcriptional control of mRNA stability and translational efficiency. It is involved in the processing of ribosomal RNA precursors. Prokaryotic RNAse III also plays a role in the maturation of tRNA precursors and in the processing of phage and plasmid transcripts. Eukaryotic RNase III's participate (through direct cleavage) in rRNA processing, in processing of small nucleolar RNAs (snoRNAs) and snRNA's (components of the spliceosome). In eukaryotes RNase III or RNaseIII like enzymes such as Dicer are involved in RNAi (RNA interference) and miRNA (micro-RNA) gene silencing. |
| >PRK12902 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.8e-06 Score=107.75 Aligned_cols=126 Identities=19% Similarity=0.093 Sum_probs=87.6
Q ss_pred CCCCcHHHHHHHHHHhcCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHH---HHHHHHhhcCC
Q 000384 43 NFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQ---QYDVIRVHTDF 119 (1590)
Q Consensus 43 ~~~pR~yQ~e~le~~~~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Q---q~~~i~~~~~~ 119 (1590)
...|++.|.-.- .++.+.-|..|.||-|||++|.+++.-... .++.|-+++++--|+.. |...+-+++|+
T Consensus 83 G~r~ydVQliGg-l~Lh~G~IAEM~TGEGKTL~atlpaylnAL------~GkgVhVVTvNdYLA~RDae~m~~vy~~LGL 155 (939)
T PRK12902 83 GMRHFDVQLIGG-MVLHEGQIAEMKTGEGKTLVATLPSYLNAL------TGKGVHVVTVNDYLARRDAEWMGQVHRFLGL 155 (939)
T ss_pred CCCcchhHHHhh-hhhcCCceeeecCCCChhHHHHHHHHHHhh------cCCCeEEEeCCHHHHHhHHHHHHHHHHHhCC
Confidence 344555554432 235788899999999999999987654332 23447888888899885 44555567899
Q ss_pred ceEEEecCCCCCccchHHHHHhcCCCcEEEEcHHHH-----HHHHHh--cCcCccceeEEEEecccccc
Q 000384 120 EVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQIL-----LDALRK--AFLSLDIVCFIVIDECHHAT 181 (1590)
Q Consensus 120 ~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L-----~~~l~~--~~~~l~~i~lII~DEaH~~~ 181 (1590)
.|+.+.+++.... ++..-.++|+.+|..-| .+.+.. .......+++.|+||++.+.
T Consensus 156 tvg~i~~~~~~~e------rr~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 156 SVGLIQQDMSPEE------RKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred eEEEECCCCChHH------HHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEeccccee
Confidence 9999887664432 22333789999999877 333322 12345778999999999875
|
|
| >PF00035 dsrm: Double-stranded RNA binding motif; InterPro: IPR001159 The DsRBD domain is found in a variety of RNA-binding proteins with different structures and exhibiting a diversity of functions [] | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.9e-07 Score=82.12 Aligned_cols=63 Identities=27% Similarity=0.294 Sum_probs=53.7
Q ss_pred hhhHHHHHHHhcCCcceee-eeeeCce---EEEEEEEEEcCeEEEEEEEeCCHHHHHHHHHHHHHHHh
Q 000384 1359 PLRELIELCDSLGYFVKEN-CTLKGEM---VHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKL 1422 (1590)
Q Consensus 1359 P~~~L~e~~~~~~~~~~~~-~~~~g~~---~~~~~~v~~~g~~~~~~g~g~skk~Ak~~AA~~AL~~L 1422 (1590)
|++.|+|+|++.+..++++ ....|+. +.|.|.|+++|. .++.|.|.|||+||..||+.||+.|
T Consensus 1 ~~~~L~e~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~-~~~~g~g~sKk~Ak~~AA~~al~~L 67 (67)
T PF00035_consen 1 PKSRLNEYCQKNKFPPPYYYIEEEGPSHHRPRFICTVYIDGK-EYGEGEGSSKKEAKQQAAKKALQKL 67 (67)
T ss_dssp HHHHHHHHHHHCTSSEEEEEEEEESSSSSSEEEEEEEEETTE-EEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCEEEEEEeCCCCCCceEEEEEEECCE-EEeEeccCCHHHHHHHHHHHHHHhC
Confidence 7899999999999887744 4344432 689999999997 7789999999999999999999886
|
It is involved in localisation of at least five different mRNAs in the early Drosophila embryo and by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA.; GO: 0003725 double-stranded RNA binding, 0005622 intracellular; PDB: 1EKZ_A 1STU_A 1QU6_A 2L2M_A 3ADJ_A 1WHN_A 3LLH_B 2B7V_A 2L3J_A 1UHZ_A .... |
| >PRK12901 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.54 E-value=5.5e-06 Score=106.10 Aligned_cols=111 Identities=14% Similarity=0.216 Sum_probs=82.1
Q ss_pred CHHHHHHHHHHHhcCCCCCcEEEEEEehHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCC-
Q 000384 396 STKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGK- 474 (1590)
Q Consensus 396 s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~- 474 (1590)
..|..++++-+.... ..+..++|-+.+....+.|+++|.. .++....+.... ..++ .+++. +.|.
T Consensus 611 ~eK~~Aii~ei~~~~-~~GrPVLVGT~SVe~SE~lS~~L~~----~gI~H~VLNAK~------h~~E-AeIVA--~AG~~ 676 (1112)
T PRK12901 611 REKYNAVIEEITELS-EAGRPVLVGTTSVEISELLSRMLKM----RKIPHNVLNAKL------HQKE-AEIVA--EAGQP 676 (1112)
T ss_pred HHHHHHHHHHHHHHH-HCCCCEEEEeCcHHHHHHHHHHHHH----cCCcHHHhhccc------hhhH-HHHHH--hcCCC
Confidence 578888877666554 4567899999999999999999988 455544444431 1122 23332 2343
Q ss_pred ceEEEEcccccccccCC--------CccEEEEccCCCCHHHHHHHhccccccCc
Q 000384 475 VNLLFATDVIEEGMHVP--------NCSYVIRFDLPKTVSSYIQSRGRARQHNS 520 (1590)
Q Consensus 475 ~~vLVaT~vleeGIDip--------~~~~VI~fD~p~s~~~yiQr~GRA~R~gs 520 (1590)
-.|-|||+++++|-||. +-=+||--..+.|.+---|-+|||||.|-
T Consensus 677 GaVTIATNMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGD 730 (1112)
T PRK12901 677 GTVTIATNMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGD 730 (1112)
T ss_pred CcEEEeccCcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCC
Confidence 46899999999999997 33478888899999999999999999884
|
|
| >smart00358 DSRM Double-stranded RNA binding motif | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.9e-07 Score=82.15 Aligned_cols=63 Identities=27% Similarity=0.319 Sum_probs=53.0
Q ss_pred hhhHHHHHHHhcCCcceeeeee-eCce--EEEEEEEEEcCeEEEEEEEeCCHHHHHHHHHHHHHHHh
Q 000384 1359 PLRELIELCDSLGYFVKENCTL-KGEM--VHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKL 1422 (1590)
Q Consensus 1359 P~~~L~e~~~~~~~~~~~~~~~-~g~~--~~~~~~v~~~g~~~~~~g~g~skk~Ak~~AA~~AL~~L 1422 (1590)
|++.|+|+|++.++.+.+.... .|+. ..|+|.|.++|. ..+.|.|.|||+||+.||+.||+.|
T Consensus 1 p~~~L~e~~~~~~~~~~y~~~~~~g~~~~~~f~~~v~i~~~-~~~~g~g~sKk~Ak~~AA~~al~~L 66 (67)
T smart00358 1 PKSLLQELAQKRGLPPEYELVKEEGPDHAPRFTVTVKVGGE-YTGEGEGSSKKEAKQRAAEAALRSL 66 (67)
T ss_pred CchHHHHHHHHCCCCCEEEEEeeeCCCCCCcEEEEEEECCE-EEEEeccCCHHHHHHHHHHHHHHhc
Confidence 7899999999999854444333 4543 689999999987 7789999999999999999999887
|
|
| >cd00048 DSRM Double-stranded RNA binding motif | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.1e-07 Score=81.35 Aligned_cols=64 Identities=28% Similarity=0.321 Sum_probs=53.2
Q ss_pred ChhhHHHHHHHhcCCcce-eee-eeeCce--EEEEEEEEEcCeEEEEEEEeCCHHHHHHHHHHHHHHHh
Q 000384 1358 PPLRELIELCDSLGYFVK-ENC-TLKGEM--VHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKL 1422 (1590)
Q Consensus 1358 ~P~~~L~e~~~~~~~~~~-~~~-~~~g~~--~~~~~~v~~~g~~~~~~g~g~skk~Ak~~AA~~AL~~L 1422 (1590)
||++.|+|+|++.+...+ +.. ...|+. ..|+|.|.++|. ..+.|.|.|||+||+.||+.||+.|
T Consensus 1 ~p~~~L~e~~~~~~~~~~~y~~~~~~g~~~~~~f~~~v~i~~~-~~~~g~g~sKk~Ak~~AA~~al~~L 68 (68)
T cd00048 1 NPKSLLQELAQKRGKPLPEYELVEEEGPDHAPRFTVEVTVGGK-ITGEGEGSSKKEAKQNAAEAALRKL 68 (68)
T ss_pred ChHHHHHHHHHHcCCCCCeEEEeeeeCCCCCCeEEEEEEECCE-EEEEeecCCHHHHHHHHHHHHHHhC
Confidence 699999999999865444 433 345554 789999999995 8899999999999999999999875
|
Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases. |
| >PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.6e-05 Score=100.06 Aligned_cols=133 Identities=17% Similarity=0.141 Sum_probs=85.9
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhhcCCceEEEecCCCCCccchHHHHHh
Q 000384 62 TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKE 141 (1590)
Q Consensus 62 ~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~~~~v~~~~G~~~~d~~~~~~w~~~ 141 (1590)
.+|-+|+|||||...+-++++.+. .+..+++++...++|+.+.+..++...--....|....... ..
T Consensus 52 ~vVRSpMGTGKTtaLi~wLk~~l~-----~~~~~VLvVShRrSL~~sL~~rf~~~~l~gFv~Y~d~~~~~--------i~ 118 (824)
T PF02399_consen 52 LVVRSPMGTGKTTALIRWLKDALK-----NPDKSVLVVSHRRSLTKSLAERFKKAGLSGFVNYLDSDDYI--------ID 118 (824)
T ss_pred EEEECCCCCCcHHHHHHHHHHhcc-----CCCCeEEEEEhHHHHHHHHHHHHhhcCCCcceeeecccccc--------cc
Confidence 589999999999877766666542 45677999999999999999999865211122222211100 00
Q ss_pred cCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCCCcHHHHHHH-------HHhcCCCCCcEEEEeccCC
Q 000384 142 INKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKE-------FYHKSDNKPKVFGMTASPV 211 (1590)
Q Consensus 142 ~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~~~~~~im~~-------~~~~~~~~priLgLTATP~ 211 (1590)
...++-+++..+.|.+.... .++++++||+||+-...+. -|..-|+. +.......++++.|-|+..
T Consensus 119 ~~~~~rLivqIdSL~R~~~~---~l~~yDvVIIDEv~svL~q-L~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln 191 (824)
T PF02399_consen 119 GRPYDRLIVQIDSLHRLDGS---LLDRYDVVIIDEVMSVLNQ-LFSPTMRQREEVDNLLKELIRNAKTVIVMDADLN 191 (824)
T ss_pred ccccCeEEEEehhhhhcccc---cccccCEEEEehHHHHHHH-HhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCC
Confidence 01356777777777665422 3567899999999776543 33333332 2223456799999999864
|
It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication |
| >KOG1042 consensus Germ-line stem cell division protein Hiwi/Piwi; negative developmental regulator [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.7e-07 Score=109.33 Aligned_cols=101 Identities=23% Similarity=0.384 Sum_probs=80.5
Q ss_pred ccccCcEEEeccCCceEEEEEecCCCCCCCCCCCCCCCCCchHHHHHhhhccccccCCCCceEEeeccCCccccccccCC
Q 000384 891 KNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVNFND 970 (1590)
Q Consensus 891 ~~l~~~vV~~~~~~~~y~v~~i~~d~~p~spf~~~~~~~~~ty~~yy~~k~~~~i~~~~QPlL~~~~~~~~~n~l~~~~~ 970 (1590)
..+.+++|.+.|||+.|.+.+|+++.+|.|.|... +.-.||.|||+++|++.|.+.+||+|..++-.++.
T Consensus 282 ~~~~glivLT~YNNktyriddvD~~~tP~stF~k~--dgeIs~veYyk~qYni~I~dl~QPlliS~~k~K~~-------- 351 (845)
T KOG1042|consen 282 KNVIGLIVLTRYNNKTYRIDDVDFSQTPLSTFKKD--DGEISFVEYYKKQYNIEITDLNQPLLISEPKDKRP-------- 351 (845)
T ss_pred HHhcceEEEEecCCceeeeeccccCcCccceeeec--CceeeHhHHHHHhcCeEEeeCCcceEeccCcccCC--------
Confidence 35679999999999999999999999999999853 45789999999999999999999999765333210
Q ss_pred CCCCCCCCCCCCCCCCCCceeeeccccceeccccHHHHHHHhhc
Q 000384 971 GGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLL 1014 (1590)
Q Consensus 971 ~~~~~~~~~~~~~~~~~~~~~~l~pe~~~~~~~p~~~~~~~~~l 1014 (1590)
........+|+||+|....+...+-.-+.++
T Consensus 352 -------------~g~~~q~~~lIPELc~~TGLtd~mr~dF~~M 382 (845)
T KOG1042|consen 352 -------------KGEPPQLAMLIPELCFLTGLTDEMRSDFQLM 382 (845)
T ss_pred -------------CCCCccceeeehhhhhccCCcHHHHhhHHHH
Confidence 0011234579999999999988876655443
|
|
| >KOG0383 consensus Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.8e-07 Score=114.84 Aligned_cols=160 Identities=17% Similarity=0.190 Sum_probs=100.3
Q ss_pred CCCcHHHHHHHHHHh-----cCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhhc-
Q 000384 44 FIPRIYQLKVFEVAK-----RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT- 117 (1590)
Q Consensus 44 ~~pR~yQ~e~le~~~-----~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~- 117 (1590)
=.+-+||.|.++.+. +-++|+++++|.|||..++.++..+... .......|+++|.-..+. |-.++..+.
T Consensus 294 g~L~~~qleGln~L~~~ws~~~~~ilADEmgLgktVqsi~fl~sl~~~---~~~~~P~Lv~ap~sT~~n-we~e~~~wap 369 (696)
T KOG0383|consen 294 GTLHPYQLEGLNWLRISWSPGVDAILADEMGLGKTVQSIVFLYSLPKE---IHSPGPPLVVAPLSTIVN-WEREFELWAP 369 (696)
T ss_pred ccccccchhhhhhhhcccccCCCcccchhhcCCceeeEEEEEeecccc---cCCCCCceeeccCccccC-CCCchhccCC
Confidence 345699999998875 4789999999999999887766665542 222233688888866655 666777665
Q ss_pred CCceEEEecCCCCCc------cc-----------hHHHH-HhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEecccc
Q 000384 118 DFEVEEYYGAKGVDE------WD-----------SQCWQ-KEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHH 179 (1590)
Q Consensus 118 ~~~v~~~~G~~~~d~------~~-----------~~~w~-~~~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~ 179 (1590)
.+.+..+.|....+. +. ...|. ......+|.+.+|+.... ....+.+-++.++|+||+|+
T Consensus 370 ~~~vv~~~G~~k~r~iirepe~s~ed~~~~~~~~i~~~~~~s~~k~~vl~~s~~~~~~--~~~il~~v~w~~livde~~r 447 (696)
T KOG0383|consen 370 SFYVVPYPGTAKSRAIIREPEFSFEDSSIKSSPKISEMKTESSAKFHVLLPSYETIEI--DQSILFSVQWGLLIVDEAHR 447 (696)
T ss_pred CcccccCCCCccchhhhhcccccccccccccCCccccccchhhcccccCCCchhhccc--CHHHHhhhhcceeEeechhh
Confidence 355555555432110 00 01121 112246777888876533 22234456789999999999
Q ss_pred ccCCCcHHHHHHHHHh-cCCCCCcEEEEeccCCccC
Q 000384 180 ATGNHPYTKIMKEFYH-KSDNKPKVFGMTASPVVRK 214 (1590)
Q Consensus 180 ~~~~~~~~~im~~~~~-~~~~~priLgLTATP~~~~ 214 (1590)
+..+.. +.|+. .....-+.+.+|+||.+++
T Consensus 448 lkn~~s-----~~f~~l~~~~~~~~~lltgtPlqnn 478 (696)
T KOG0383|consen 448 LKNKQS-----KRFRVLTAYPIDSKLLLTGTPLQNN 478 (696)
T ss_pred cccchh-----hhhhhccccccchhhhccCCcchhh
Confidence 976411 11111 1234467789999999876
|
|
| >PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=6.9e-06 Score=106.34 Aligned_cols=141 Identities=22% Similarity=0.229 Sum_probs=85.5
Q ss_pred CEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHh-----hc-----C--CceEEEecCC
Q 000384 61 NTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRV-----HT-----D--FEVEEYYGAK 128 (1590)
Q Consensus 61 n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~-----~~-----~--~~v~~~~G~~ 128 (1590)
|+.+.|+||+|||++++..|.++.. ..+-.++||+||+.+..+.....+.. ++ + +...++.+..
T Consensus 61 n~~~~M~TGtGKT~~~~~~i~~l~~----~~~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k 136 (986)
T PRK15483 61 NIDIKMETGTGKTYVYTRLMYELHQ----KYGLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGD 136 (986)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHH----HcCCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCc
Confidence 6889999999999999999988865 33456799999999998887766652 22 1 3334444332
Q ss_pred CCCccc---hHHHHHhc-------CCCcEEEEcHHHHHHHHH----------hcC-cCccce----eEEEEeccccccCC
Q 000384 129 GVDEWD---SQCWQKEI-------NKNDVLVMTPQILLDALR----------KAF-LSLDIV----CFIVIDECHHATGN 183 (1590)
Q Consensus 129 ~~d~~~---~~~w~~~~-------~~~~VlV~T~q~L~~~l~----------~~~-~~l~~i----~lII~DEaH~~~~~ 183 (1590)
+...-. ....+... ...+|+|+|.|.|..... .+. ..++.+ -+||+||.||+.+.
T Consensus 137 ~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~~ 216 (986)
T PRK15483 137 KKKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPRD 216 (986)
T ss_pred ccccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCcc
Confidence 100000 01111111 135899999999955221 111 222222 27999999999652
Q ss_pred -CcHHHHHHHHHhcCCCCC-cEEEEeccCCc
Q 000384 184 -HPYTKIMKEFYHKSDNKP-KVFGMTASPVV 212 (1590)
Q Consensus 184 -~~~~~im~~~~~~~~~~p-riLgLTATP~~ 212 (1590)
..|..|.. -.| .+|-.|||--.
T Consensus 217 ~k~~~~i~~-------lnpl~~lrysAT~~~ 240 (986)
T PRK15483 217 NKFYQAIEA-------LKPQMIIRFGATFPD 240 (986)
T ss_pred hHHHHHHHh-------cCcccEEEEeeecCC
Confidence 34544422 123 46779999643
|
|
| >cd02825 PAZ PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.8e-06 Score=84.44 Aligned_cols=65 Identities=31% Similarity=0.484 Sum_probs=53.5
Q ss_pred ccccCcEEEeccC--CceEEEEEecCCCCCCCCCCCCCCCCCchHHHHHhhhccccccCCCCceEEeec
Q 000384 891 KNLKDMVVLAIHT--GRIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQ 957 (1590)
Q Consensus 891 ~~l~~~vV~~~~~--~~~y~v~~i~~d~~p~spf~~~~~~~~~ty~~yy~~k~~~~i~~~~QPlL~~~~ 957 (1590)
..+++..|.+.|+ ++.|.|.++.+..++.. |+.. ++...||++||+++||+.+.+|+||+|.+.+
T Consensus 31 ~~lkg~~V~~~h~~~~r~y~i~~i~~~~a~~~-f~~~-~~~~isv~dYf~~kY~~~l~~p~~Pll~~~~ 97 (115)
T cd02825 31 KELKGLKVEDTHNPLNRVYRPDGETRLKAPSQ-LKHS-DGKEITFADYFKERYNLTLTDLNQPLLIVKF 97 (115)
T ss_pred HHcCCCEEEEecCCCceEEEEeeEECCCChhh-eecC-CCCEEEHHHHHHHHcCCcccCCCCCEEEecC
Confidence 3567889999997 57899999988666655 7632 3457899999999999999999999999874
|
PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes. This parent model also contains structures of an archaeal PAZ domain. |
| >PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.1e-05 Score=89.03 Aligned_cols=127 Identities=20% Similarity=0.180 Sum_probs=84.6
Q ss_pred CCCCCcHHHHHHHHHHhcCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHh---hcC
Q 000384 42 INFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRV---HTD 118 (1590)
Q Consensus 42 ~~~~pR~yQ~e~le~~~~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~---~~~ 118 (1590)
..+.|++.|.-+.=. +.++-|+.+.||=|||+++.++..-..- .++.|=|++...-|+..-++.++. .+|
T Consensus 74 ~g~~p~~vQll~~l~-L~~G~laEm~TGEGKTli~~l~a~~~AL------~G~~V~vvT~NdyLA~RD~~~~~~~y~~LG 146 (266)
T PF07517_consen 74 LGLRPYDVQLLGALA-LHKGRLAEMKTGEGKTLIAALPAALNAL------QGKGVHVVTSNDYLAKRDAEEMRPFYEFLG 146 (266)
T ss_dssp TS----HHHHHHHHH-HHTTSEEEESTTSHHHHHHHHHHHHHHT------TSS-EEEEESSHHHHHHHHHHHHHHHHHTT
T ss_pred cCCcccHHHHhhhhh-cccceeEEecCCCCcHHHHHHHHHHHHH------hcCCcEEEeccHHHhhccHHHHHHHHHHhh
Confidence 356777888777643 3556699999999999999886644332 344578888888999876666655 579
Q ss_pred CceEEEecCCCCCccchHHHHHhcCCCcEEEEcHHHHH-HHHHhcCc------CccceeEEEEecccccc
Q 000384 119 FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILL-DALRKAFL------SLDIVCFIVIDECHHAT 181 (1590)
Q Consensus 119 ~~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~-~~l~~~~~------~l~~i~lII~DEaH~~~ 181 (1590)
+.|+.+++++..+. +...-.++|+.+|...|. +.|+..+. ....++++|+|||+.+.
T Consensus 147 lsv~~~~~~~~~~~------r~~~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 147 LSVGIITSDMSSEE------RREAYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp --EEEEETTTEHHH------HHHHHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred hccccCccccCHHH------HHHHHhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 99999998765332 122225789999998873 45543221 24678899999999876
|
SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A .... |
| >PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A | Back alignment and domain information |
|---|
Probab=98.00 E-value=2.6e-05 Score=88.77 Aligned_cols=71 Identities=21% Similarity=0.213 Sum_probs=52.2
Q ss_pred CCcHHHHHHHHHHhcCC--EEEEeCCCChHHHHHHHHHHHHHHH--HHhCCCCeEEEEEecChhhHHHHHHHHHh
Q 000384 45 IPRIYQLKVFEVAKRRN--TIAVLETGAGKTMIAVMLIKDIAQA--IKSNGFKKLIIFLAPTVHLVHQQYDVIRV 115 (1590)
Q Consensus 45 ~pR~yQ~e~le~~~~~n--~Ii~~~TGsGKTliailli~~~l~~--~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~ 115 (1590)
++.+.|.+++..++..+ ++|.+|.|||||.+...++..+.+. ......++++++++|+..-+.+..+.+..
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 36789999999998765 8999999999998777777666321 01235667799999999999999998887
|
|
| >KOG2777 consensus tRNA-specific adenosine deaminase 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.90 E-value=2.3e-05 Score=94.42 Aligned_cols=66 Identities=23% Similarity=0.314 Sum_probs=55.4
Q ss_pred cCCchhhHHHHHHhCCCCCCceeEeecccccccccccCCcccccceeeEEEEEEEecCCceEEEeCCCCCCccchhhhHH
Q 000384 1493 KGGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAA 1572 (1590)
Q Consensus 1493 ~~~~k~~L~e~~~~~~~~~P~y~~~~~~~~~~~~~~~Gp~h~~~~~~F~~~v~i~~~~~~~~~~~g~~~~sKK~A~~~AA 1572 (1590)
..||.+.|+|+.+ -|.|.++.+ .||.|+ +.|+|.|+|. |. .+.|. +.|||+||+.||
T Consensus 89 ~~npv~ll~e~~~-----~~~~~~~~~---------~~~~~~---~~F~~~~~vd----g~-~~~~~-~~sKk~ak~~aa 145 (542)
T KOG2777|consen 89 GKNPVSLLHELAN-----GLFFDFVNE---------SGPQHA---PKFVMSVVVD----GR-WFEGG-GRSKKEAKQEAA 145 (542)
T ss_pred cCCchHHHHHHhc-----ccceeeecc---------CCCCCC---ceEEEEEEEC----CE-EccCC-CcchHHHHHHHH
Confidence 5789999999997 689999988 899999 8999999984 33 34445 477999999999
Q ss_pred HHHHHHHHH
Q 000384 1573 LIMLHELER 1581 (1590)
Q Consensus 1573 ~~~l~~l~~ 1581 (1590)
..||+.|-.
T Consensus 146 ~~al~~l~~ 154 (542)
T KOG2777|consen 146 MAALQVLFK 154 (542)
T ss_pred HHHHHHHHh
Confidence 999998853
|
|
| >TIGR00604 rad3 DNA repair helicase (rad3) | Back alignment and domain information |
|---|
Probab=97.85 E-value=9.2e-05 Score=97.76 Aligned_cols=71 Identities=21% Similarity=0.198 Sum_probs=56.5
Q ss_pred CCCCC-cHHHHHHHHHHh-----cCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHh
Q 000384 42 INFIP-RIYQLKVFEVAK-----RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRV 115 (1590)
Q Consensus 42 ~~~~p-R~yQ~e~le~~~-----~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~ 115 (1590)
..+.+ ||.|.+.++.+. +++.++.+|||+|||++.+........ ..+...+++|++.|..-..|..+++++
T Consensus 6 FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~---~~~~~~kIiy~sRThsQl~q~i~Elk~ 82 (705)
T TIGR00604 6 FPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQ---EKPEVRKIIYASRTHSQLEQATEELRK 82 (705)
T ss_pred cCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHH---hccccccEEEEcccchHHHHHHHHHHh
Confidence 35666 999999998875 489999999999999988876655433 122335799999999988999999887
|
All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.83 E-value=2.6e-05 Score=100.48 Aligned_cols=145 Identities=19% Similarity=0.216 Sum_probs=101.0
Q ss_pred CCEEEEeCCCChHHHHHHHHHHHHHH--------HHHh----CCCCeEEEEEecChhhHHHHHHHHHhhc--CCceEEEe
Q 000384 60 RNTIAVLETGAGKTMIAVMLIKDIAQ--------AIKS----NGFKKLIIFLAPTVHLVHQQYDVIRVHT--DFEVEEYY 125 (1590)
Q Consensus 60 ~n~Ii~~~TGsGKTliailli~~~l~--------~~~~----~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~--~~~v~~~~ 125 (1590)
+.++.+..+|+|||..-+........ .... ....+..|||+|. ++..||.++|..|. +++|..|.
T Consensus 375 ~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~lKv~~Y~ 453 (1394)
T KOG0298|consen 375 KRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSLLKVLLYF 453 (1394)
T ss_pred cceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhccccceEEEEe
Confidence 45799999999999876654332211 0111 1123558999998 88899999999997 36888888
Q ss_pred cCCCCCccchHHHHHhcCCCcEEEEcHHHHHHHHHhcC--------------cC------ccceeEEEEeccccccCCCc
Q 000384 126 GAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAF--------------LS------LDIVCFIVIDECHHATGNHP 185 (1590)
Q Consensus 126 G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~~~--------------~~------l~~i~lII~DEaH~~~~~~~ 185 (1590)
|-.... |... ..+.++|||++||.+|.+.+.|.. +. +-.|=-|++|||+.+-...+
T Consensus 454 Girk~~-~~~~---~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMvesssS 529 (1394)
T KOG0298|consen 454 GIRKTF-WLSP---FELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVESSSS 529 (1394)
T ss_pred chhhhc-ccCc---hhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcchHH
Confidence 854332 3322 456789999999999998886641 11 11233489999999987777
Q ss_pred HHHHHHHHHhcCCCCCcEEEEeccCCcc
Q 000384 186 YTKIMKEFYHKSDNKPKVFGMTASPVVR 213 (1590)
Q Consensus 186 ~~~im~~~~~~~~~~priLgLTATP~~~ 213 (1590)
+..-|...++ +-..++.||||+++
T Consensus 530 ~~a~M~~rL~----~in~W~VTGTPiq~ 553 (1394)
T KOG0298|consen 530 AAAEMVRRLH----AINRWCVTGTPIQK 553 (1394)
T ss_pred HHHHHHHHhh----hhceeeecCCchhh
Confidence 7777764433 34579999999975
|
|
| >KOG3769 consensus Ribonuclease III domain proteins [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00028 Score=77.44 Aligned_cols=71 Identities=23% Similarity=0.127 Sum_probs=54.2
Q ss_pred CCchhhHHHHHHhCCCCCCceeEeecccccccccccCCcccccceeeEEEEEEEecCCceEEEeCCCCCCccchhhhHHH
Q 000384 1494 GGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAAL 1573 (1590)
Q Consensus 1494 ~~~k~~L~e~~~~~~~~~P~y~~~~~~~~~~~~~~~Gp~h~~~~~~F~~~v~i~~~~~~~~~~~g~~~~sKK~A~~~AA~ 1573 (1590)
.+|...|-++|++++..-|+++++.+ +|---+ .+-|++-+-. +....+.|.| +|-|.|++.||.
T Consensus 232 ~~P~~~L~~lckr~~l~epe~Rll~e---------sGr~S~--~PvyvVgiYs----~kkllGqG~G-esl~~A~e~AA~ 295 (333)
T KOG3769|consen 232 QWPRRLLSRLCKRRGLKEPESRLLAE---------SGRNSA--EPVYVVGIYS----GKKLLGQGQG-ESLKLAEEQAAR 295 (333)
T ss_pred cchHHHHHHHHHHcCCCCchhHHHHH---------hccCcc--CceEEEEeec----CchhhccCcc-hHHHHHHHHHHH
Confidence 45669999999999999999999998 665332 1566644332 3445666766 779999999999
Q ss_pred HHHHHHH
Q 000384 1574 IMLHELE 1580 (1590)
Q Consensus 1574 ~~l~~l~ 1580 (1590)
.||..+.
T Consensus 296 dAL~k~y 302 (333)
T KOG3769|consen 296 DALIKLY 302 (333)
T ss_pred HHHHHHH
Confidence 9999885
|
|
| >PF13872 AAA_34: P-loop containing NTP hydrolase pore-1 | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00046 Score=78.33 Aligned_cols=155 Identities=19% Similarity=0.102 Sum_probs=94.3
Q ss_pred CCcHHHHHHHHHHh-----------cCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHH
Q 000384 45 IPRIYQLKVFEVAK-----------RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVI 113 (1590)
Q Consensus 45 ~pR~yQ~e~le~~~-----------~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i 113 (1590)
.+..-|.|++--+- +...++.+.||.||.-+...+|.+-.. . +++++|++..+..|...-.+.+
T Consensus 37 ~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l----~-Gr~r~vwvS~s~dL~~Da~RDl 111 (303)
T PF13872_consen 37 LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWL----R-GRKRAVWVSVSNDLKYDAERDL 111 (303)
T ss_pred cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHH----c-CCCceEEEECChhhhhHHHHHH
Confidence 46788999876552 356899999999999877776666433 2 3445777888889988877777
Q ss_pred HhhcC--CceEEEecCCCCCccchHHHHHhcCCCcEEEEcHHHHHHHHHhc---CcCc--------cce-eEEEEecccc
Q 000384 114 RVHTD--FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA---FLSL--------DIV-CFIVIDECHH 179 (1590)
Q Consensus 114 ~~~~~--~~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~~---~~~l--------~~i-~lII~DEaH~ 179 (1590)
+..-. +.+..+.. +... ...-....|+++||..|...-..+ .-++ .++ .+|||||||+
T Consensus 112 ~DIG~~~i~v~~l~~------~~~~--~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~ 183 (303)
T PF13872_consen 112 RDIGADNIPVHPLNK------FKYG--DIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHK 183 (303)
T ss_pred HHhCCCcccceechh------hccC--cCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchh
Confidence 75432 22222211 1100 001125579999999997764321 1111 222 4999999999
Q ss_pred ccCCCcH----HH--HHHHHHhcCCCCCcEEEEeccCCc
Q 000384 180 ATGNHPY----TK--IMKEFYHKSDNKPKVFGMTASPVV 212 (1590)
Q Consensus 180 ~~~~~~~----~~--im~~~~~~~~~~priLgLTATP~~ 212 (1590)
+++-..- .+ +.-.-+...-+..|++-+|||...
T Consensus 184 akn~~~~~~~~sk~g~avl~LQ~~LP~ARvvY~SATgas 222 (303)
T PF13872_consen 184 AKNLSSGSKKPSKTGIAVLELQNRLPNARVVYASATGAS 222 (303)
T ss_pred cCCCCccCccccHHHHHHHHHHHhCCCCcEEEecccccC
Confidence 9754220 11 111112223356789999999763
|
|
| >KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00022 Score=88.47 Aligned_cols=208 Identities=15% Similarity=0.117 Sum_probs=132.3
Q ss_pred ChhhHHHHHHHhcCCcceeeeeeeCce--EEEEEEEEEcCeEEEEEEEeCCHHHHHHHHHHHHHHHhhhhhhhcccCCC-
Q 000384 1358 PPLRELIELCDSLGYFVKENCTLKGEM--VHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEVCEKRISKGAS- 1434 (1590)
Q Consensus 1358 ~P~~~L~e~~~~~~~~~~~~~~~~g~~--~~~~~~v~~~g~~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~~~~~~~~~- 1434 (1590)
+-+..|..||.+..+.+.+.+...|+. ..|.|.|.+.+....+.|...+||+|...||+..++.|....+--....+
T Consensus 2 d~k~fly~~~~k~~~~p~~d~~~~~~~~rqrf~ce~~~~~~~~~~~~~stnkKda~knac~dfv~ylvr~Gk~n~~d~p~ 81 (1282)
T KOG0921|consen 2 DVKEFLYAWLGKNKYGPTYDIRSEGRKGRQRFLCEVRVEGFGYTAVGNSTNKKDAATNAAQDFCQYLVREGKMQQSDIPT 81 (1282)
T ss_pred cHHHHHHHHHhhhccCcceehhhhcccchhheeeeeeccCCcceeeecccccchhhHHHHHHHHHHhhhhccccccCCcc
Confidence 456789999999998877777777665 67889999988888999999999999999999999998763111000000
Q ss_pred -----CC--------CcCCCccccCCCCCCCCCcccccccCccc-cccCCCcccc-----------------cccccCCC
Q 000384 1435 -----NT--------GKLGDDCRQTTKEDLPEPPSCKRQKGTEA-AIPAGDSCKK-----------------AYCMTVGT 1483 (1590)
Q Consensus 1435 -----~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----------------~~~~~~~~ 1483 (1590)
.+ +.....|..+.-...+... +..+. ..+|.+.... +..+..+-
T Consensus 82 ~~s~s~~~~~~l~~~~~a~~~~~~~~g~~~q~~~-----qd~p~~~~p~~~d~~~~~~g~~~~~~~qkae~~~e~ea~d~ 156 (1282)
T KOG0921|consen 82 LTSSSLEASSTWQDSETATMFCGGEDGNSFQESQ-----QPIPQKRFPWSNNAYQRNEGTHEQYITQKAEEIAESETVDL 156 (1282)
T ss_pred cccccccCcccccccccccccccccccccCCCCC-----CCcccccccccccccccCCCCCchhHHHHhhhhhhhhhhcc
Confidence 00 0000122111111111000 00000 0011111000 00111222
Q ss_pred ccccccccccCCchhhHHHHHHhCCCCCCceeEeecccccccccccCCcccccceeeEEEEEEEecCC-ceEEEeCCCCC
Q 000384 1484 PVVAPINMKKGGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEF-GNVECNGDPRA 1562 (1590)
Q Consensus 1484 ~~~~~~~~~~~~~k~~L~e~~~~~~~~~P~y~~~~~~~~~~~~~~~Gp~h~~~~~~F~~~v~i~~~~~-~~~~~~g~~~~ 1562 (1590)
.+.-+.+|...|.|..|+++-|+..... .|+.+.. ||.|. ++|+.+..+.++.. ...+.. ++++
T Consensus 157 ~~~ihg~wt~eN~K~~ln~~~q~~~~~~-~y~~~~~----------g~~~~---~s~~~e~si~v~~~~~~~~~~-~~gs 221 (1282)
T KOG0921|consen 157 NAEIHGNWTMENAKKALNEYLQKMRIQD-NYKYTIV----------GPEHV---RSFEAEASIYVPQLNRNLVAK-ETGS 221 (1282)
T ss_pred CccccCCCCcchhHHHHhHHHhhhhhcc-ccceeec----------CCccc---cchhhhHHHhhhhhchhhhhh-hccc
Confidence 3334446667889999999999999955 8988874 99999 89999998888764 333333 3448
Q ss_pred CccchhhhHHHHHHHHHHHcCee
Q 000384 1563 DKKSSFDSAALIMLHELERQGKI 1585 (1590)
Q Consensus 1563 sKK~A~~~AA~~~l~~l~~~~~~ 1585 (1590)
+||.|+.+.|...+++|-+..+.
T Consensus 222 nkk~~~~~ca~s~vrqm~hl~~~ 244 (1282)
T KOG0921|consen 222 NKKVAEASCALSLVRQLFHLNVM 244 (1282)
T ss_pred cceecCcchHHHHHHHHHHHhhh
Confidence 89999999999999998776554
|
|
| >KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.50 E-value=6.8e-05 Score=94.88 Aligned_cols=113 Identities=25% Similarity=0.289 Sum_probs=88.5
Q ss_pred CCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhhc---CCceEEEecCCCCCccchH
Q 000384 60 RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT---DFEVEEYYGAKGVDEWDSQ 136 (1590)
Q Consensus 60 ~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~---~~~v~~~~G~~~~d~~~~~ 136 (1590)
.|.++.+|||+|||++|.+.++..+. ..+..++++++|.++|+..-.+...+.. |++++.+.|+...+.
T Consensus 944 ~~~~~g~ptgsgkt~~ae~a~~~~~~----~~p~~kvvyIap~kalvker~~Dw~~r~~~~g~k~ie~tgd~~pd~---- 1015 (1230)
T KOG0952|consen 944 LNFLLGAPTGSGKTVVAELAIFRALS----YYPGSKVVYIAPDKALVKERSDDWSKRDELPGIKVIELTGDVTPDV---- 1015 (1230)
T ss_pred hhhhhcCCccCcchhHHHHHHHHHhc----cCCCccEEEEcCCchhhcccccchhhhcccCCceeEeccCccCCCh----
Confidence 67899999999999999998877655 4566889999999999875544444322 788999999877652
Q ss_pred HHHHhcCCCcEEEEcHHHHHHHHHh--cCcCccceeEEEEeccccccCC
Q 000384 137 CWQKEINKNDVLVMTPQILLDALRK--AFLSLDIVCFIVIDECHHATGN 183 (1590)
Q Consensus 137 ~w~~~~~~~~VlV~T~q~L~~~l~~--~~~~l~~i~lII~DEaH~~~~~ 183 (1590)
....+.+++|+||+......+. ..-...+++++|+||.|.+...
T Consensus 1016 ---~~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~ 1061 (1230)
T KOG0952|consen 1016 ---KAVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED 1061 (1230)
T ss_pred ---hheecCceEEcccccccCccccccchhhhccccceeecccccccCC
Confidence 3445889999999999776653 2334678999999999998754
|
|
| >KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00064 Score=84.57 Aligned_cols=156 Identities=18% Similarity=0.196 Sum_probs=97.1
Q ss_pred CCCcHHHHHHHHHHhc-CCEEEEeCCCChHHHHHHHHHHH-HHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhhcCCce
Q 000384 44 FIPRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKD-IAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEV 121 (1590)
Q Consensus 44 ~~pR~yQ~e~le~~~~-~n~Ii~~~TGsGKTliailli~~-~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~~~~v 121 (1590)
+..-.|-.++++.... .-+||-.+||+|||......|.+ +++ ...+...-+.+--|++.-+.-.++.+.+.-+-.+
T Consensus 377 lpva~~~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~--ns~g~~~na~v~qprrisaisiaerva~er~e~~ 454 (1282)
T KOG0921|consen 377 LPVAQYRSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLE--NSNGASFNAVVSQPRRISAISLAERVANERGEEV 454 (1282)
T ss_pred CcHHHHHHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhh--ccccccccceeccccccchHHHHHHHHHhhHHhh
Confidence 3344555666666554 45789999999999877665555 333 1223334467777887766666666655443333
Q ss_pred EEEecCCCCCccchHHHHHhc--CCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCCCcHHHHHHHHHhcCCC
Q 000384 122 EEYYGAKGVDEWDSQCWQKEI--NKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDN 199 (1590)
Q Consensus 122 ~~~~G~~~~d~~~~~~w~~~~--~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~~~~~~im~~~~~~~~~ 199 (1590)
+..+|-. +.. .... ..--|++||-+.+++++..+. ..+.++|+||.|..--+..+..++..=......
T Consensus 455 g~tvgy~-vRf------~Sa~prpyg~i~fctvgvllr~~e~gl---rg~sh~i~deiherdv~~dfll~~lr~m~~ty~ 524 (1282)
T KOG0921|consen 455 GETCGYN-VRF------DSATPRPYGSIMFCTVGVLLRMMENGL---RGISHVIIDEIHERDVDTDFVLIVLREMISTYR 524 (1282)
T ss_pred ccccccc-ccc------cccccccccceeeeccchhhhhhhhcc---cccccccchhhhhhccchHHHHHHHHhhhccch
Confidence 3333321 110 0111 133688999999999887754 567899999999876665665554433333345
Q ss_pred CCcEEEEeccCC
Q 000384 200 KPKVFGMTASPV 211 (1590)
Q Consensus 200 ~priLgLTATP~ 211 (1590)
.-+++.|+||..
T Consensus 525 dl~v~lmsatId 536 (1282)
T KOG0921|consen 525 DLRVVLMSATID 536 (1282)
T ss_pred hhhhhhhhcccc
Confidence 577889999853
|
|
| >PF14709 DND1_DSRM: double strand RNA binding domain from DEAD END PROTEIN 1 | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00026 Score=64.84 Aligned_cols=67 Identities=19% Similarity=0.132 Sum_probs=51.9
Q ss_pred CChhhHHHHHHHhcCCcceee-e-eeeCce--EEEEEEEEEcCeEEE---------EEEEeCCHHHHHHHHHHHHHHHhh
Q 000384 1357 LPPLRELIELCDSLGYFVKEN-C-TLKGEM--VHAELRLQLKDVLLV---------GEGQERSRKAAKGKAASQLLKKLE 1423 (1590)
Q Consensus 1357 ~~P~~~L~e~~~~~~~~~~~~-~-~~~g~~--~~~~~~v~~~g~~~~---------~~g~g~skk~Ak~~AA~~AL~~L~ 1423 (1590)
+||++.|+|+|+++++..|.+ + ...|+. ..|.+.|.|.+...- +.--..++++||..||+.||..|.
T Consensus 1 k~a~~~L~elC~k~~W~~P~y~l~~~~Gp~~~~~F~ykV~i~~~~~~~~~~~~~~~p~~~~~~~k~Ak~~AA~~~L~~Lg 80 (80)
T PF14709_consen 1 KSAVSLLNELCQKNKWGPPVYELVSESGPDHRKLFLYKVVIPGLEYPFEGSIECFGPTKPSSTKKEAKESAAQQALQALG 80 (80)
T ss_pred CCHHHHHHHHHHhcCCCCCeEEEEeccCCCccEEEEEEEEEcCCCCCCcceEEEccCCCcCccHHHHHHHHHHHHHHhcC
Confidence 589999999999999998843 3 345765 689999998876431 123446799999999999998873
|
|
| >KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00022 Score=82.48 Aligned_cols=67 Identities=18% Similarity=-0.008 Sum_probs=53.7
Q ss_pred CChhhHHHHHHHhcCCcceee--eeeeCceEEEEEEEEEcCeEEEEEEEeCCHHHHHHHHHHHHHHHhhh
Q 000384 1357 LPPLRELIELCDSLGYFVKEN--CTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEV 1424 (1590)
Q Consensus 1357 ~~P~~~L~e~~~~~~~~~~~~--~~~~g~~~~~~~~v~~~g~~~~~~g~g~skk~Ak~~AA~~AL~~L~~ 1424 (1590)
+.-+..|+|++|+.-...+.+ ...+.....|...|.+|+- -+|+|.|.|||.||..||+.+|++|.-
T Consensus 375 ks~vCiLhEy~q~~lk~~pvyef~e~~n~stpysa~v~~d~~-~yGsG~g~sKK~Ak~~AAR~tLeiLIP 443 (650)
T KOG4334|consen 375 KSKVCILHEYAQQCLKSLPVYEFAENDNNSTPYSAGVLPDLF-PYGSGVGASKKTAKLVAARDTLEILIP 443 (650)
T ss_pred ceeeehHHHHHHHHhhhcceeehhhccCCCCccccccccccc-ccccccccchHHHHHHHHHHHHHHhcc
Confidence 566789999999877666633 2223444568888999886 889999999999999999999999863
|
|
| >cd02846 PAZ_argonaute_like PAZ domain, argonaute_like subfamily | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00028 Score=70.25 Aligned_cols=65 Identities=28% Similarity=0.489 Sum_probs=53.3
Q ss_pred cccCcEEEeccC---CceEEEEEecCCCCCCCCCCCCCCCCCchHHHHHhhhccccccCCCCceEEee
Q 000384 892 NLKDMVVLAIHT---GRIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLK 956 (1590)
Q Consensus 892 ~l~~~vV~~~~~---~~~y~v~~i~~d~~p~spf~~~~~~~~~ty~~yy~~k~~~~i~~~~QPlL~~~ 956 (1590)
.+++.-|.+.|. ++.|.|.++..+..+...|+........|+.+||+++|++.+.+|++|+|.+.
T Consensus 31 ~lkgl~v~~~~~~~~~r~~~i~~l~~~~~~~~~F~~~~~~~~isV~dYf~~~y~~~l~~p~lP~v~~g 98 (114)
T cd02846 31 ALKGLKVEVTHRGNTNRKYKIKGLSAEPASQQTFELKDGEKEISVADYFKEKYNIRLKYPNLPCLQVG 98 (114)
T ss_pred HhCCCEEEEEcCCCCCceEEEeeccCCCccceEEEcCCCCcEEEHHHHHHHHcCCcccCCCCCEEEeC
Confidence 467888888886 68999999988877778887531123789999999999999999999999874
|
Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes. |
| >KOG1803 consensus DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00056 Score=82.77 Aligned_cols=142 Identities=19% Similarity=0.160 Sum_probs=94.4
Q ss_pred CCCCCCCcHHHHHHHHHHhc--CCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhh-
Q 000384 40 NSINFIPRIYQLKVFEVAKR--RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVH- 116 (1590)
Q Consensus 40 ~~~~~~pR~yQ~e~le~~~~--~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~- 116 (1590)
...+..+.+-|..++..+.. .=.+|.+|.|+|||.+-+.+|.++.. .+++||+++||..-|....+.+.-.
T Consensus 180 ~~~~~~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk------~~k~VLVcaPSn~AVdNiverl~~~~ 253 (649)
T KOG1803|consen 180 TFFNKNLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVK------QKKRVLVCAPSNVAVDNIVERLTHLK 253 (649)
T ss_pred ccCCccccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHH------cCCeEEEEcCchHHHHHHHHHhcccc
Confidence 34567788999999999875 34689999999999999999988876 4577999999999888877754310
Q ss_pred -----cC-------------CceEEEecC--------------------CCCC-ccchHHH------------------H
Q 000384 117 -----TD-------------FEVEEYYGA--------------------KGVD-EWDSQCW------------------Q 139 (1590)
Q Consensus 117 -----~~-------------~~v~~~~G~--------------------~~~d-~~~~~~w------------------~ 139 (1590)
.| +....-.++ ...+ .-.+..| .
T Consensus 254 ~~l~R~g~paRl~~~~~~~sld~~~~t~d~~~~~~~~sk~~d~~~~~~~~tk~~~~~~~~~~~i~~lrkdl~kre~~~v~ 333 (649)
T KOG1803|consen 254 LNLVRVGHPARLLESVADHSLDLLSNTKDNSQNAKDISKDIDILFQKNTKTKNDKLRKGIRKEIKLLRKDLRKRERKTVK 333 (649)
T ss_pred cchhhcCchhhhhhhhhhhHHHHHHhcCchhhhhhhhHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 011111111 0000 0001111 1
Q ss_pred HhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCCCcHHHHHH
Q 000384 140 KEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMK 191 (1590)
Q Consensus 140 ~~~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~~~~~~im~ 191 (1590)
..+.+.+|+++|-+--...+.. -..++++|+|||-.+.....|-.+++
T Consensus 334 eii~n~~VVfaTl~ga~~~~~~----~~~fD~vIIDEaaQamE~~cWipvlk 381 (649)
T KOG1803|consen 334 EIISNSRVVFATLGGALDRLLR----KRTFDLVIIDEAAQAMEPQCWIPVLK 381 (649)
T ss_pred HhhcccceEEEeccchhhhhhc----ccCCCEEEEehhhhhccchhhhHHhc
Confidence 3345789999998766553222 25689999999999887767777765
|
|
| >KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00073 Score=81.63 Aligned_cols=133 Identities=20% Similarity=0.136 Sum_probs=93.5
Q ss_pred CCCCCCcHHHHHHHHHHhcCC-EEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhhcCC
Q 000384 41 SINFIPRIYQLKVFEVAKRRN-TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDF 119 (1590)
Q Consensus 41 ~~~~~pR~yQ~e~le~~~~~n-~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~~~ 119 (1590)
+.--++..-|..|++.++.+. .||.+|.|+|||.+...++.++.+ . ....||+.+|+..-|.|.++.|.+. |+
T Consensus 406 ~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~----~-~~~~VLvcApSNiAVDqLaeKIh~t-gL 479 (935)
T KOG1802|consen 406 PNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLAR----Q-HAGPVLVCAPSNIAVDQLAEKIHKT-GL 479 (935)
T ss_pred CCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHH----h-cCCceEEEcccchhHHHHHHHHHhc-Cc
Confidence 344568899999999999765 699999999999999999998877 2 3445999999999999999999865 67
Q ss_pred ceEEEecCCCCCc------------------------------------cc--------hHHHHHhcCCCcEEEEcHHHH
Q 000384 120 EVEEYYGAKGVDE------------------------------------WD--------SQCWQKEINKNDVLVMTPQIL 155 (1590)
Q Consensus 120 ~v~~~~G~~~~d~------------------------------------~~--------~~~w~~~~~~~~VlV~T~q~L 155 (1590)
+|..++.....+. .+ ...-..++..++||.||--..
T Consensus 480 KVvRl~aksRE~~~S~vs~L~lh~~~~~~~~pELq~l~klkde~gelS~sD~~k~~~lk~~~e~ell~~AdVIccTcv~A 559 (935)
T KOG1802|consen 480 KVVRLCAKSREDIESDVSFLSLHEQLRNMDKPELQKLLKLKDEGGELSSSDEKKYRKLKRAAEKELLNQADVICCTCVGA 559 (935)
T ss_pred eEeeeehhhhhhccCCccHHHHHHHHhccCcHHHHHHHhhhhhcccccchhhHHHHHHHHHHHHHHHhhcCEEEEecccc
Confidence 7766643211000 00 011224456788998885432
Q ss_pred HHHHHhcCcCccceeEEEEeccccccCC
Q 000384 156 LDALRKAFLSLDIVCFIVIDECHHATGN 183 (1590)
Q Consensus 156 ~~~l~~~~~~l~~i~lII~DEaH~~~~~ 183 (1590)
-+ ..+.-..+..|++||+-.+...
T Consensus 560 gd----~rl~~~kfr~VLiDEaTQatEp 583 (935)
T KOG1802|consen 560 GD----RRLSKFKFRTVLIDEATQATEP 583 (935)
T ss_pred cc----hhhccccccEEEEecccccCCc
Confidence 11 1122246789999999888664
|
|
| >TIGR00376 DNA helicase, putative | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00096 Score=86.22 Aligned_cols=74 Identities=18% Similarity=0.117 Sum_probs=59.7
Q ss_pred CCCcHHHHHHHHHHhc--CCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhhcCCce
Q 000384 44 FIPRIYQLKVFEVAKR--RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEV 121 (1590)
Q Consensus 44 ~~pR~yQ~e~le~~~~--~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~~~~v 121 (1590)
..+.+.|.+++..++. ..++|.+|+|+|||.+.+.++.++.. .+.+|++++||..-|.+..+.+... ++++
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~------~g~~VLv~a~sn~Avd~l~e~l~~~-~~~v 228 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVK------RGLRVLVTAPSNIAVDNLLERLALC-DQKI 228 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHH------cCCCEEEEcCcHHHHHHHHHHHHhC-CCcE
Confidence 4679999999999985 57899999999999999888887765 2346999999999999888888764 4444
Q ss_pred EEE
Q 000384 122 EEY 124 (1590)
Q Consensus 122 ~~~ 124 (1590)
..+
T Consensus 229 vRl 231 (637)
T TIGR00376 229 VRL 231 (637)
T ss_pred EEe
Confidence 333
|
The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases. |
| >PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00033 Score=84.74 Aligned_cols=96 Identities=15% Similarity=0.191 Sum_probs=65.7
Q ss_pred CCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhhcCCceEEEecCCCCCccchHHHH
Q 000384 60 RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQ 139 (1590)
Q Consensus 60 ~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~~~~v~~~~G~~~~d~~~~~~w~ 139 (1590)
+-++|.+..|||||++|+.++..+.. ...+..++++++..+|+....+.+.... ..
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~----~~~~~~~~~l~~n~~l~~~l~~~l~~~~-------~~------------- 57 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQN----SEEGKKVLYLCGNHPLRNKLREQLAKKY-------NP------------- 57 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhc----cccCCceEEEEecchHHHHHHHHHhhhc-------cc-------------
Confidence 34789999999999999999888721 2345568999999999887777776543 00
Q ss_pred HhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccC
Q 000384 140 KEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATG 182 (1590)
Q Consensus 140 ~~~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~ 182 (1590)
......+..+..+.+.+.........+++|||||||++..
T Consensus 58 ---~~~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 58 ---KLKKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred ---chhhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhh
Confidence 0112334444444443332233457889999999999865
|
It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation []. |
| >PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.001 Score=73.02 Aligned_cols=112 Identities=17% Similarity=0.220 Sum_probs=77.1
Q ss_pred CCCCCCcHHHHHHHHHHhc----CCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhh
Q 000384 41 SINFIPRIYQLKVFEVAKR----RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVH 116 (1590)
Q Consensus 41 ~~~~~pR~yQ~e~le~~~~----~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~ 116 (1590)
..++..|+-|.++...... .|.+..+-||.|||-+.+-++..++. .+.+.|.++||. +|..|..+.++..
T Consensus 19 e~~iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI~Pmla~~LA-----dg~~LvrviVpk-~Ll~q~~~~L~~~ 92 (229)
T PF12340_consen 19 ESNILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVIVPMLALALA-----DGSRLVRVIVPK-ALLEQMRQMLRSR 92 (229)
T ss_pred HcCceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccchHHHHHHHHHc-----CCCcEEEEEcCH-HHHHHHHHHHHHH
Confidence 3578899999999988874 79999999999999987665555543 355678888886 8999999988886
Q ss_pred cC----CceEEEec--CCCCCccchHHHH----HhcCCCcEEEEcHHHHHHH
Q 000384 117 TD----FEVEEYYG--AKGVDEWDSQCWQ----KEINKNDVLVMTPQILLDA 158 (1590)
Q Consensus 117 ~~----~~v~~~~G--~~~~d~~~~~~w~----~~~~~~~VlV~T~q~L~~~ 158 (1590)
++ -++..+.= +...+........ .......|+++||+.++..
T Consensus 93 lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf 144 (229)
T PF12340_consen 93 LGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSF 144 (229)
T ss_pred HHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHH
Confidence 53 33333322 2222221112222 2234678999999987553
|
There are two conserved sequence motifs: LLE and NMG. |
| >PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.001 Score=72.58 Aligned_cols=55 Identities=22% Similarity=0.221 Sum_probs=40.4
Q ss_pred cHHHHHHHHHHhc-CCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhh
Q 000384 47 RIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105 (1590)
Q Consensus 47 R~yQ~e~le~~~~-~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~L 105 (1590)
...|..+++.+++ ..+++.++.|||||+.|+....+++. .+.-.+++++-|.++.
T Consensus 6 ~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~----~g~~~kiii~Rp~v~~ 61 (205)
T PF02562_consen 6 NEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVK----EGEYDKIIITRPPVEA 61 (205)
T ss_dssp SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHH----TTS-SEEEEEE-S--T
T ss_pred CHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHH----hCCCcEEEEEecCCCC
Confidence 6799999999885 56789999999999999998887766 3555678888888654
|
; GO: 0005524 ATP binding; PDB: 3B85_A. |
| >PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.002 Score=70.82 Aligned_cols=67 Identities=22% Similarity=0.197 Sum_probs=43.1
Q ss_pred CCcHHHHHHHHHHhc--CC-EEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhhcCCce
Q 000384 45 IPRIYQLKVFEVAKR--RN-TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEV 121 (1590)
Q Consensus 45 ~pR~yQ~e~le~~~~--~n-~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~~~~v 121 (1590)
++.+-|.+++..++. .+ ++|.++.|+|||.+...+...+.. .+.++++++||...+. +++..++..+
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~~~------~g~~v~~~apT~~Aa~----~L~~~~~~~a 70 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEALEA------AGKRVIGLAPTNKAAK----ELREKTGIEA 70 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHHHH------TT--EEEEESSHHHHH----HHHHHHTS-E
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHHHh------CCCeEEEECCcHHHHH----HHHHhhCcch
Confidence 367889999999963 23 678899999999875554443332 2467999999966554 4554444433
|
|
| >PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0018 Score=66.29 Aligned_cols=118 Identities=18% Similarity=0.233 Sum_probs=63.9
Q ss_pred CCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhhcCCceEEEecCCCCCccchHHHH
Q 000384 60 RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQ 139 (1590)
Q Consensus 60 ~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~~~~v~~~~G~~~~d~~~~~~w~ 139 (1590)
+.++|.+++|+|||..+-.++..+............+.+-+|...-.......+...++.....
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~---------------- 68 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS---------------- 68 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS----------------
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc----------------
Confidence 5578999999999999988887765432222344555555665443445555555544322211
Q ss_pred HhcCCCcEEEEcH----HHHHHHHHhcCcCccceeEEEEeccccccCCCcHHHHHHHHHhcCCCCCcEEEEeccCC
Q 000384 140 KEINKNDVLVMTP----QILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPV 211 (1590)
Q Consensus 140 ~~~~~~~VlV~T~----q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~~~~~~im~~~~~~~~~~priLgLTATP~ 211 (1590)
-.+. +.+.+.+.+.. ..+||+||+|++. . ...+..+....+...--+.+.++|.
T Consensus 69 ---------~~~~~~l~~~~~~~l~~~~-----~~~lviDe~~~l~-~---~~~l~~l~~l~~~~~~~vvl~G~~~ 126 (131)
T PF13401_consen 69 ---------RQTSDELRSLLIDALDRRR-----VVLLVIDEADHLF-S---DEFLEFLRSLLNESNIKVVLVGTPE 126 (131)
T ss_dssp ---------TS-HHHHHHHHHHHHHHCT-----EEEEEEETTHHHH-T---HHHHHHHHHHTCSCBEEEEEEESST
T ss_pred ---------cCCHHHHHHHHHHHHHhcC-----CeEEEEeChHhcC-C---HHHHHHHHHHHhCCCCeEEEEEChh
Confidence 0112 22333333322 2799999999984 2 3333333222333344578888874
|
|
| >COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.037 Score=71.21 Aligned_cols=112 Identities=13% Similarity=0.153 Sum_probs=73.5
Q ss_pred CHHHHHHHHHHHhcCCCCCcEEEEEEehHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCc
Q 000384 396 STKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKV 475 (1590)
Q Consensus 396 s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~ 475 (1590)
..|..+.++.+.... ..+..+||-+.+....+.+.++|.+ .++....+.... ..|+.-+-.+.--.-
T Consensus 412 ~~K~~Aiv~~I~~~~-~~gqPvLvgT~sie~SE~ls~~L~~----~~i~h~VLNAk~--------h~~EA~Iia~AG~~g 478 (822)
T COG0653 412 EEKFKAIVEDIKERH-EKGQPVLVGTVSIEKSELLSKLLRK----AGIPHNVLNAKN--------HAREAEIIAQAGQPG 478 (822)
T ss_pred HHHHHHHHHHHHHHH-hcCCCEEEcCcceecchhHHHHHHh----cCCCceeecccc--------HHHHHHHHhhcCCCC
Confidence 467777777665443 4567899999999999999999997 455544555441 233333333332233
Q ss_pred eEEEEcccccccccCCCcc-----------EEEEccCCCCHHHHHHHhccccccCc
Q 000384 476 NLLFATDVIEEGMHVPNCS-----------YVIRFDLPKTVSSYIQSRGRARQHNS 520 (1590)
Q Consensus 476 ~vLVaT~vleeGIDip~~~-----------~VI~fD~p~s~~~yiQr~GRA~R~gs 520 (1590)
-+=|||+++++|-||.--. +||--..-.|-+---|-+||+||.|-
T Consensus 479 aVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGD 534 (822)
T COG0653 479 AVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGD 534 (822)
T ss_pred ccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCC
Confidence 5789999999999986322 24433333344444599999999883
|
|
| >PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.2 Score=61.04 Aligned_cols=94 Identities=14% Similarity=0.188 Sum_probs=75.0
Q ss_pred CCCcEEEEEEehHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCceEEEEccccc--cccc
Q 000384 412 STQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIE--EGMH 489 (1590)
Q Consensus 412 ~~~~k~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~~vLVaT~vle--eGID 489 (1590)
....+++||+++=-.--.|..+|++ .++....++-- .+.++-.++-..|.+|+.++|+-|.-+- +-..
T Consensus 298 ~~~~~~LIfIPSYfDfVRlRN~lk~----~~~sF~~i~EY------ts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~ 367 (442)
T PF06862_consen 298 SKMSGTLIFIPSYFDFVRLRNYLKK----ENISFVQISEY------TSNSDISRARSQFFHGRKPILLYTERFHFFRRYR 367 (442)
T ss_pred cCCCcEEEEecchhhhHHHHHHHHh----cCCeEEEeccc------CCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhce
Confidence 3445799999998777788888886 56777767654 4677888899999999999999997654 4567
Q ss_pred CCCccEEEEccCCCCHHHHHHHhccc
Q 000384 490 VPNCSYVIRFDLPKTVSSYIQSRGRA 515 (1590)
Q Consensus 490 ip~~~~VI~fD~p~s~~~yiQr~GRA 515 (1590)
|.++..||.|.+|.++.=|.....-.
T Consensus 368 irGi~~viFY~~P~~p~fY~El~n~~ 393 (442)
T PF06862_consen 368 IRGIRHVIFYGPPENPQFYSELLNML 393 (442)
T ss_pred ecCCcEEEEECCCCChhHHHHHHhhh
Confidence 88899999999999998776655443
|
; GO: 0005634 nucleus |
| >PF13245 AAA_19: Part of AAA domain | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0031 Score=57.43 Aligned_cols=59 Identities=20% Similarity=0.207 Sum_probs=43.2
Q ss_pred HHHHHhc-CC-EEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHH
Q 000384 53 VFEVAKR-RN-TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVI 113 (1590)
Q Consensus 53 ~le~~~~-~n-~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i 113 (1590)
++..++. .+ ++|.++.|||||.+++-.+.++.... ... ++++++++|++..+++..+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~-~~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAAR-ADP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHh-cCC-CCeEEEECCCHHHHHHHHHHH
Confidence 4453333 44 55699999999998888888876411 122 667999999999988877776
|
|
| >PF03368 Dicer_dimer: Dicer dimerisation domain; InterPro: IPR005034 This domain is found in members of the Dicer protein family of dsRNA nucleases | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0013 Score=62.00 Aligned_cols=70 Identities=27% Similarity=0.345 Sum_probs=44.9
Q ss_pred hhhHHHHHHhCC-----CCCCceeEeecccccccccccCCcccccceeeEEEEEEEecCC-ceEEEeCCCCCCccchhhh
Q 000384 1497 RTSLFQLCKTML-----WPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEF-GNVECNGDPRADKKSSFDS 1570 (1590)
Q Consensus 1497 k~~L~e~~~~~~-----~~~P~y~~~~~~~~~~~~~~~Gp~h~~~~~~F~~~v~i~~~~~-~~~~~~g~~~~sKK~A~~~ 1570 (1590)
.+.|+.||++-- ...|.|++... . ..|+|+|.+ +.. +.-.+.|....|||.||++
T Consensus 2 i~lL~~yC~~Lp~d~~~~~~P~~~~~~~---------~--------~~~~c~v~L--P~~~pi~~i~g~~~~sk~~AK~s 62 (90)
T PF03368_consen 2 ISLLNRYCSTLPSDSFTNLKPEFEIEKI---------G--------SGFICTVIL--PINSPIRSIEGPPMRSKKLAKRS 62 (90)
T ss_dssp HHHHHHHHTTSSS-TT--SS-EEEEEE-------------------G-EEEEEE----TT-SS--EEEE--SSHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCccCCceEEEEEc---------C--------CcEEEEEEC--CCCCCCCeEEccccccHHHHHHH
Confidence 378999998732 24678887775 2 257875554 443 3334677788899999999
Q ss_pred HHHHHHHHHHHcCee
Q 000384 1571 AALIMLHELERQGKI 1585 (1590)
Q Consensus 1571 AA~~~l~~l~~~~~~ 1585 (1590)
||-+|..+|.+.|.|
T Consensus 63 AAf~Ac~~L~~~g~l 77 (90)
T PF03368_consen 63 AAFEACKKLHEAGEL 77 (90)
T ss_dssp HHHHHHHHHHHH-S-
T ss_pred HHHHHHHHHHHcCCC
Confidence 999999999999986
|
This entry represents a dsRNA-binding domain. RNA interference (RNAi) is an ancient gene-silencing process that plays a fundamental role in diverse eukaryotic functions including viral defence, chromatin remodelling, genome rearrangement, developmental timing, brain morphogenesis, and stem cell maintenance. All RNAi pathways require the multidomain ribonuclease Dicer, which initiates RNAi by cleaving double-stranded RNA (dsRNA) substrates into small fragments ~25 nuleotides in length. A typical eukaryotic Dicer consists of a helicase domain (PDOC51192 from PROSITEDOC), a domain of unknown function, and a PAZ domain (PDOC50821 from PROSITEDOC) at the amino (N)-terminus as well as two ribonuclease III domains (PDOC00448 from PROSITEDOC) and a dsRNA-binding domain (dsRBD) (PDOC50137 from PROSITEDOC) at the carboxy (C)-terminus. The domain of unknown function of ~100 amino acids is predicted to adopt the canonical alpha-beta-beta-beta-alpha-fold found in all dsRBDs [, , , ].; GO: 0016891 endoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2KOU_A. |
| >PF00636 Ribonuclease_3: Ribonuclease III domain; InterPro: IPR000999 Prokaryotic ribonuclease III (3 | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0006 Score=67.95 Aligned_cols=23 Identities=35% Similarity=0.787 Sum_probs=21.1
Q ss_pred CCCCchhhhHHHHHHhceeecCC
Q 000384 1310 MKAPKALGDLLESIVGAVLIDTK 1332 (1590)
Q Consensus 1310 ~~~~k~l~D~~Ea~iGAi~lDsg 1332 (1590)
...+|+++|+|||+|||||+|+|
T Consensus 92 ~~~~k~laD~~EAliGAiyld~G 114 (114)
T PF00636_consen 92 VLPPKVLADVFEALIGAIYLDSG 114 (114)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCccHHHHHHHHHHHHHHHHhcC
Confidence 44699999999999999999998
|
1.26.3 from EC) (gene rnc) [] is an enzyme that digests double-stranded RNA. It is involved in the processing of ribosomal RNA precursors and of some mRNAs. RNase III is evolutionary related to a number of proteins including []: Saccharomyces cerevisiae (Baker's yeast) protein pac1, a ribonuclease that probably inhibits mating and meiosis by degrading a specific mRNA required for sexual development yeast ribonuclease III (gene RNT1), a dsRNA-specific nuclease that cleaves eukaryotic preribosomal RNA at various sites Caenorhabditis elegans hypothetical protein F26E4.13 Paramecium bursaria Chlorella virus 1 (PBCV-1) 1 protein A464R Synechocystis sp. (strain PCC 6803) hypothetical protein slr0346 yeast hypothetical protein SpAC8A4.08c, a protein with a N-terminal helicase domain and a C-terminal RNase III domain C. elegans hypothetical protein K12H4.8, a protein with the same structure as SpAC8A4.08c ; GO: 0003723 RNA binding, 0004525 ribonuclease III activity, 0006396 RNA processing; PDB: 2GSL_A 2NUE_B 1YYO_A 2NUF_A 1YZ9_A 1JFZ_A 1YYW_C 1RC5_B 1YYK_B 1RC7_A .... |
| >COG3587 Restriction endonuclease [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0048 Score=77.41 Aligned_cols=44 Identities=20% Similarity=0.327 Sum_probs=41.7
Q ss_pred CceEEEEcccccccccCCCccEEEEccCCCCHHHHHHHhccccc
Q 000384 474 KVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQ 517 (1590)
Q Consensus 474 ~~~vLVaT~vleeGIDip~~~~VI~fD~p~s~~~yiQr~GRA~R 517 (1590)
..+++++-.+|-||.|-|++=.++-.....|..+=.|-+||.-|
T Consensus 483 plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLR 526 (985)
T COG3587 483 PLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLR 526 (985)
T ss_pred cceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhcccee
Confidence 48999999999999999999999999999999999999999877
|
|
| >PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0052 Score=65.75 Aligned_cols=80 Identities=24% Similarity=0.334 Sum_probs=55.8
Q ss_pred CcEEEEEEehHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCceEEEEcc--cccccccCC
Q 000384 414 QVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATD--VIEEGMHVP 491 (1590)
Q Consensus 414 ~~k~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~~vLVaT~--vleeGIDip 491 (1590)
...++||+++....+.+.+.+.......++. .+..+ .....++++.|++++--+|+|+. .+.||||+|
T Consensus 9 ~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~-v~~q~---------~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~ 78 (167)
T PF13307_consen 9 PGGVLVFFPSYRRLEKVYERLKERLEEKGIP-VFVQG---------SKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFP 78 (167)
T ss_dssp SSEEEEEESSHHHHHHHHTT-TSS-E-ETSC-EEEST---------CCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--E
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhhcccccce-eeecC---------cchHHHHHHHHHhccCeEEEEEecccEEEeecCC
Confidence 3589999999999988888877632111221 11212 24668999999999999999998 999999999
Q ss_pred C--ccEEEEccCCC
Q 000384 492 N--CSYVIRFDLPK 503 (1590)
Q Consensus 492 ~--~~~VI~fD~p~ 503 (1590)
+ |..||....|.
T Consensus 79 ~~~~r~vii~glPf 92 (167)
T PF13307_consen 79 GDLLRAVIIVGLPF 92 (167)
T ss_dssp CESEEEEEEES---
T ss_pred CchhheeeecCCCC
Confidence 6 88999888664
|
|
| >PRK10536 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0051 Score=68.95 Aligned_cols=57 Identities=19% Similarity=0.192 Sum_probs=40.7
Q ss_pred CCC-cHHHHHHHHHHhc-CCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChh
Q 000384 44 FIP-RIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVH 104 (1590)
Q Consensus 44 ~~p-R~yQ~e~le~~~~-~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~ 104 (1590)
+.| ...|..++..+.. ..+++.+++|+|||+.|..+..+.+. .+.-.++++.=|++.
T Consensus 57 i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~----~~~~~kIiI~RP~v~ 115 (262)
T PRK10536 57 ILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALI----HKDVDRIIVTRPVLQ 115 (262)
T ss_pred ccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHh----cCCeeEEEEeCCCCC
Confidence 444 5688888887764 67889999999999999988776553 123455666666654
|
|
| >KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.012 Score=74.43 Aligned_cols=41 Identities=22% Similarity=0.272 Sum_probs=34.0
Q ss_pred CCCCCCCCCcHHHHHHHHHHh-----cCCEEEEeCCCChHHHHHHH
Q 000384 38 STNSINFIPRIYQLKVFEVAK-----RRNTIAVLETGAGKTMIAVM 78 (1590)
Q Consensus 38 ~~~~~~~~pR~yQ~e~le~~~-----~~n~Ii~~~TGsGKTliail 78 (1590)
.+-...++|++-|...+.+++ ++|+++-.|||+|||+.-+-
T Consensus 14 v~V~fP~qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLC 59 (945)
T KOG1132|consen 14 VPVEFPFQPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLC 59 (945)
T ss_pred ceeeccCCcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHH
Confidence 444568999999999998886 48999999999999985443
|
|
| >COG3421 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0018 Score=77.78 Aligned_cols=113 Identities=16% Similarity=0.197 Sum_probs=66.6
Q ss_pred EEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhhc----CCceEEEecCCCCCccchHHHH
Q 000384 64 AVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT----DFEVEEYYGAKGVDEWDSQCWQ 139 (1590)
Q Consensus 64 i~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~----~~~v~~~~G~~~~d~~~~~~w~ 139 (1590)
..|+||||||++...+|.+... .+-+..+|.|+....++-...-|-.-. =+.-.+..++..+.......+.
T Consensus 2 f~matgsgkt~~ma~lil~~y~-----kgyr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~fs 76 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYK-----KGYRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNNFS 76 (812)
T ss_pred cccccCCChhhHHHHHHHHHHH-----hchhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecccC
Confidence 3589999999999888888765 234457888887666554433322110 0111222333332222222222
Q ss_pred HhcCCCcEEEEcHHHHHHHHHhc---CcC---cccee-EEEEecccccc
Q 000384 140 KEINKNDVLVMTPQILLDALRKA---FLS---LDIVC-FIVIDECHHAT 181 (1590)
Q Consensus 140 ~~~~~~~VlV~T~q~L~~~l~~~---~~~---l~~i~-lII~DEaH~~~ 181 (1590)
..-....|.++|.|.|...+.+. .+. +.+.. +.+-|||||+-
T Consensus 77 ehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln 125 (812)
T COG3421 77 EHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLN 125 (812)
T ss_pred ccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhh
Confidence 23345689999999998877543 233 33344 45779999985
|
|
| >KOG2340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.16 Score=60.95 Aligned_cols=114 Identities=14% Similarity=0.261 Sum_probs=75.5
Q ss_pred CHHHHHHHH-HHHhcCCCCCcEEEEEEehHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCC
Q 000384 396 STKLHELLQ-LFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGK 474 (1590)
Q Consensus 396 s~K~~~L~~-lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~ 474 (1590)
+.+..-..+ ++-.+......-|+|+.++=-.--.+...+++ ..+....++-- .+..+-.++-+-|-.|.
T Consensus 533 D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~----e~i~F~~i~EY------ssk~~vsRAR~lF~qgr 602 (698)
T KOG2340|consen 533 DARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKK----EEISFVMINEY------SSKSKVSRARELFFQGR 602 (698)
T ss_pred hHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhh----hhcchHHHhhh------hhHhhhhHHHHHHHhcC
Confidence 444544443 34444433344689999987766677777776 23332222221 23344456667799999
Q ss_pred ceEEEEccccc--ccccCCCccEEEEccCCCCHHHH---HHHhccccccC
Q 000384 475 VNLLFATDVIE--EGMHVPNCSYVIRFDLPKTVSSY---IQSRGRARQHN 519 (1590)
Q Consensus 475 ~~vLVaT~vle--eGIDip~~~~VI~fD~p~s~~~y---iQr~GRA~R~g 519 (1590)
.++|+-|.-+- +-.+|.++..||.|.+|.++.=| +-+.+|+.-.|
T Consensus 603 ~~vlLyTER~hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~g 652 (698)
T KOG2340|consen 603 KSVLLYTERAHFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQG 652 (698)
T ss_pred ceEEEEehhhhhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccC
Confidence 99999997654 56799999999999999988654 67788886666
|
|
| >PLN03202 protein argonaute; Provisional | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.0043 Score=83.29 Aligned_cols=84 Identities=21% Similarity=0.312 Sum_probs=65.9
Q ss_pred ccccCcEEEeccCCceEEEEEecCCCCCCCCCCCCC--------CCCCchHHHHHhhhccccccCC-CCceEEeeccCCc
Q 000384 891 KNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGNT--------DDDSKTFVNYFSEKYGIVLIHP-GQPLLRLKQSHNP 961 (1590)
Q Consensus 891 ~~l~~~vV~~~~~~~~y~v~~i~~d~~p~spf~~~~--------~~~~~ty~~yy~~k~~~~i~~~-~QPlL~~~~~~~~ 961 (1590)
+.+++..|.+.|+++.|.|.++.++.++...|.... .+...|+.+||+++|++.|.++ ++|++.+..-
T Consensus 293 ~~lkGl~V~t~~~~k~yrI~~i~~~~a~~~~F~~~~~~~~~~~~~~~~iSv~dYfk~~Yni~l~~p~~lPlv~~g~~--- 369 (900)
T PLN03202 293 RMLKNLRVKVSPSNQEYKITGLSEKPCKEQTFSLKQRNGNGNEVETVEITVYDYFVKHRGIELRYSGDLPCINVGKP--- 369 (900)
T ss_pred HHhcCCEEEEecCCceEEEeeccCCCCcceEEEcccCCcccccCCcceEEHHHHHHHHcCccccCCCCCCEEEcCCC---
Confidence 467899999999999999999999999988886321 1236899999999999999986 8888863210
Q ss_pred cccccccCCCCCCCCCCCCCCCCCCCCceeeeccccceeccc
Q 000384 962 HNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDV 1003 (1590)
Q Consensus 962 ~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pe~~~~~~~ 1003 (1590)
...++||||+|.+.+.
T Consensus 370 --------------------------~~~~ylP~ElC~i~~~ 385 (900)
T PLN03202 370 --------------------------KRPTYFPIELCSLVSL 385 (900)
T ss_pred --------------------------CCCeEEcceeeEccCC
Confidence 0124799999999874
|
|
| >COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.024 Score=65.21 Aligned_cols=146 Identities=21% Similarity=0.288 Sum_probs=84.5
Q ss_pred CCCCCcH-HHHHHHHHHhcCC---EEEEeCCCChHHHHHHHHHH-HHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhh
Q 000384 42 INFIPRI-YQLKVFEVAKRRN---TIAVLETGAGKTMIAVMLIK-DIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVH 116 (1590)
Q Consensus 42 ~~~~pR~-yQ~e~le~~~~~n---~Ii~~~TGsGKTliailli~-~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~ 116 (1590)
..+.||. +|.-+++.++..+ +.+.+.-|||||+.|+..-. +.+. ...-+++++.=|++++-
T Consensus 224 wGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e----~~~y~KiiVtRp~vpvG---------- 289 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLE----RKRYRKIIVTRPTVPVG---------- 289 (436)
T ss_pred hccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHH----HhhhceEEEecCCcCcc----------
Confidence 4567766 7778888888744 57889999999998887533 3333 23345578888887763
Q ss_pred cCCceEEEecCCCCCccchHHHHHhc-CCCcEEE----EcHHHHHHHHHhcCcCccce----------eEEEEecccccc
Q 000384 117 TDFEVEEYYGAKGVDEWDSQCWQKEI-NKNDVLV----MTPQILLDALRKAFLSLDIV----------CFIVIDECHHAT 181 (1590)
Q Consensus 117 ~~~~v~~~~G~~~~d~~~~~~w~~~~-~~~~VlV----~T~q~L~~~l~~~~~~l~~i----------~lII~DEaH~~~ 181 (1590)
-..+.+-|... .....|...+ ++-.+++ ++.+.+...+.++.+.+..+ .+||+|||+.+.
T Consensus 290 --~dIGfLPG~eE---eKm~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLT 364 (436)
T COG1875 290 --EDIGFLPGTEE---EKMGPWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLT 364 (436)
T ss_pred --cccCcCCCchh---hhccchHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccC
Confidence 23344444321 1122343322 1222222 23567777776665544332 478999999985
Q ss_pred CCCcHHHHHHHHHhcCCCCCcEEEEeccCCc
Q 000384 182 GNHPYTKIMKEFYHKSDNKPKVFGMTASPVV 212 (1590)
Q Consensus 182 ~~~~~~~im~~~~~~~~~~priLgLTATP~~ 212 (1590)
. ..|+..........+|+ +|+-|.+
T Consensus 365 p-----heikTiltR~G~GsKIV-l~gd~aQ 389 (436)
T COG1875 365 P-----HELKTILTRAGEGSKIV-LTGDPAQ 389 (436)
T ss_pred H-----HHHHHHHHhccCCCEEE-EcCCHHH
Confidence 4 23444444444555554 4555543
|
|
| >TIGR01448 recD_rel helicase, putative, RecD/TraA family | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.038 Score=72.86 Aligned_cols=62 Identities=21% Similarity=0.113 Sum_probs=45.9
Q ss_pred CCCCCcHHHHHHHHHHhc-CCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHH
Q 000384 42 INFIPRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVH 107 (1590)
Q Consensus 42 ~~~~pR~yQ~e~le~~~~-~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~ 107 (1590)
..+.+.+-|.+++..+.. +-++|.++.|+|||.+.-.++..+.. .++...+++++||-.-+.
T Consensus 320 ~~~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l~~i~~~~~~----~~~~~~v~l~ApTg~AA~ 382 (720)
T TIGR01448 320 LRKGLSEEQKQALDTAIQHKVVILTGGPGTGKTTITRAIIELAEE----LGGLLPVGLAAPTGRAAK 382 (720)
T ss_pred cCCCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHHHH----cCCCceEEEEeCchHHHH
Confidence 457899999999999875 66899999999999877655544322 222256888999965544
|
This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. |
| >PRK06526 transposase; Provisional | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.011 Score=67.67 Aligned_cols=27 Identities=30% Similarity=0.337 Sum_probs=23.6
Q ss_pred cCCEEEEeCCCChHHHHHHHHHHHHHH
Q 000384 59 RRNTIAVLETGAGKTMIAVMLIKDIAQ 85 (1590)
Q Consensus 59 ~~n~Ii~~~TGsGKTliailli~~~l~ 85 (1590)
++|+++++|+|+|||..+..+..+...
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~ 124 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQ 124 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHH
Confidence 489999999999999999988777654
|
|
| >PRK10875 recD exonuclease V subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.026 Score=72.28 Aligned_cols=66 Identities=23% Similarity=0.205 Sum_probs=47.5
Q ss_pred cHHHHHHHHHHhc-CCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHH
Q 000384 47 RIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIR 114 (1590)
Q Consensus 47 R~yQ~e~le~~~~-~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~ 114 (1590)
-++|.+++..+.. +-++|.++.|+|||.+...++..+.+. ...+..++++++||.--+....+.+.
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~l~~~--~~~~~~~i~l~APTgkAA~rL~e~~~ 220 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQL--ADGERCRIRLAAPTGKAAARLTESLG 220 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh--cCCCCcEEEEECCcHHHHHHHHHHHH
Confidence 4899999998886 457999999999999877766665431 11233568889999665555555444
|
|
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.065 Score=64.78 Aligned_cols=122 Identities=14% Similarity=0.077 Sum_probs=68.9
Q ss_pred CCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecC-hhhHHHHHHHHHhhcCCceEEEecCCCCCccchHHH
Q 000384 60 RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPT-VHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCW 138 (1590)
Q Consensus 60 ~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt-~~Lv~Qq~~~i~~~~~~~v~~~~G~~~~d~~~~~~w 138 (1590)
+.++++++||+|||.++.-++..+.... ...+.+..++-+.+ +.-+..|...+...+++++..
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~-~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~--------------- 238 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINS-DDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKA--------------- 238 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhh-ccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEe---------------
Confidence 3578999999999999887766554311 11234444444544 233333444444444554321
Q ss_pred HHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCCCcHHHHHHHHHhcCCC-CCcEEEEeccCC
Q 000384 139 QKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDN-KPKVFGMTASPV 211 (1590)
Q Consensus 139 ~~~~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~~~~~~im~~~~~~~~~-~priLgLTATP~ 211 (1590)
+.+++.+...+.. +.+.++||+|++.+...+.....-++.++..... .-.+|.|+||-.
T Consensus 239 ----------~~~~~~l~~~L~~----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~ 298 (388)
T PRK12723 239 ----------IESFKDLKEEITQ----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK 298 (388)
T ss_pred ----------eCcHHHHHHHHHH----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC
Confidence 1234444444432 3578999999999886542223334444443332 246799999854
|
|
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.14 Score=61.50 Aligned_cols=120 Identities=15% Similarity=0.084 Sum_probs=64.8
Q ss_pred CCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecC-hhhHHHHHHHHHhhcCCceEEEecCCCCCccchHHH
Q 000384 60 RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPT-VHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCW 138 (1590)
Q Consensus 60 ~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt-~~Lv~Qq~~~i~~~~~~~v~~~~G~~~~d~~~~~~w 138 (1590)
+.+++++|||+|||..+..++..... ..+..+..++-+.+ +.=+.+|...+.+..++.+..+
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~~~---~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~-------------- 200 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARCVM---RFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAV-------------- 200 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHH---hcCCCeEEEEecccccccHHHHHHHHHHHcCCceEec--------------
Confidence 56789999999999998888776543 11223333333333 1123445555555555544332
Q ss_pred HHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCCCcHHHHHHHHHhcCCCCCcEEEEeccCC
Q 000384 139 QKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPV 211 (1590)
Q Consensus 139 ~~~~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~~~~~~im~~~~~~~~~~priLgLTATP~ 211 (1590)
.+++.+...+. .+.+.++|+||++=....+......+..+.......-++|.|+||-.
T Consensus 201 -----------~~~~~l~~~l~----~l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~ 258 (374)
T PRK14722 201 -----------KDGGDLQLALA----ELRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSH 258 (374)
T ss_pred -----------CCcccHHHHHH----HhcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccC
Confidence 22222222232 23556899999996553332333444433222223346788999854
|
|
| >TIGR01447 recD exodeoxyribonuclease V, alpha subunit | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.065 Score=68.64 Aligned_cols=67 Identities=19% Similarity=0.170 Sum_probs=47.8
Q ss_pred HHHHHHHHHHhc-CCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHh
Q 000384 48 IYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRV 115 (1590)
Q Consensus 48 ~yQ~e~le~~~~-~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~ 115 (1590)
++|.+++..++. +-++|.++.|+|||.+...++..+...... .++.++++.+||---+....+.+..
T Consensus 148 ~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~-~~~~~I~l~APTGkAA~rL~e~~~~ 215 (586)
T TIGR01447 148 NWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALVKQSPK-QGKLRIALAAPTGKAAARLAESLRK 215 (586)
T ss_pred HHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccc-cCCCcEEEECCcHHHHHHHHHHHHh
Confidence 799999998886 557899999999999877766655431111 1124689999997666655555544
|
This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model. |
| >KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.02 Score=67.83 Aligned_cols=66 Identities=17% Similarity=0.225 Sum_probs=39.4
Q ss_pred cHHHHHHHHHHh-----cCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHH
Q 000384 47 RIYQLKVFEVAK-----RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIR 114 (1590)
Q Consensus 47 R~yQ~e~le~~~-----~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~ 114 (1590)
+|-|.+-...++ +.++++-||+|+|||..-+.+|..... .......++++..-|+.=++...++++
T Consensus 18 YPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~--~~p~~~~KliYCSRTvpEieK~l~El~ 88 (755)
T KOG1131|consen 18 YPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQL--HYPDEHRKLIYCSRTVPEIEKALEELK 88 (755)
T ss_pred CHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHH--hCCcccceEEEecCcchHHHHHHHHHH
Confidence 455665544443 488999999999999877665544321 122234456666666554444444443
|
|
| >PRK04296 thymidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.022 Score=62.41 Aligned_cols=34 Identities=9% Similarity=0.086 Sum_probs=26.1
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEec
Q 000384 62 TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAP 101 (1590)
Q Consensus 62 ~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvP 101 (1590)
.++.+|+|+|||..++.++..... .+++++++-|
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~------~g~~v~i~k~ 38 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEE------RGMKVLVFKP 38 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHH------cCCeEEEEec
Confidence 578999999999988888776654 3456777766
|
|
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.16 Score=55.78 Aligned_cols=122 Identities=16% Similarity=0.089 Sum_probs=71.2
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEec-ChhhHHHHHHHHHhhcCCceEEEecCCCCCccchHHHHH
Q 000384 62 TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAP-TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQK 140 (1590)
Q Consensus 62 ~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvP-t~~Lv~Qq~~~i~~~~~~~v~~~~G~~~~d~~~~~~w~~ 140 (1590)
+++++|||+|||..+.-+..++.. . +.+..++-+. .+.=+..|-+.+.+.+++++....-.. +
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~----~-~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~--~--------- 67 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKL----K-GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTES--D--------- 67 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHH----T-T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTS--C---------
T ss_pred EEEECCCCCchHhHHHHHHHHHhh----c-cccceeecCCCCCccHHHHHHHHHHHhccccchhhcch--h---------
Confidence 579999999999998888777654 2 3444444444 334455667777777776654322111 1
Q ss_pred hcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCCCcHHHHHHHHHhcCCCCCcEEEEeccCC
Q 000384 141 EINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPV 211 (1590)
Q Consensus 141 ~~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~~~~~~im~~~~~~~~~~priLgLTATP~ 211 (1590)
..+.+.+.+.. ..-++.++|++|-+-+...+.....-|+.+.....+.-..|-|+||-.
T Consensus 68 ----------~~~~~~~~l~~--~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~ 126 (196)
T PF00448_consen 68 ----------PAEIAREALEK--FRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMG 126 (196)
T ss_dssp ----------HHHHHHHHHHH--HHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGG
T ss_pred ----------hHHHHHHHHHH--HhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccC
Confidence 01122223322 122457899999987765443444555665555555567789999854
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.16 Score=67.37 Aligned_cols=102 Identities=16% Similarity=0.045 Sum_probs=64.7
Q ss_pred CCCCcHHHHHHHHHHhc--CCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhhcCCc
Q 000384 43 NFIPRIYQLKVFEVAKR--RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFE 120 (1590)
Q Consensus 43 ~~~pR~yQ~e~le~~~~--~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~~~~ 120 (1590)
.+.+.+-|.+++..+.. +-++|.++.|+|||.+.-.++.. +. ..+..+++++||---+ ..++..+++.
T Consensus 350 ~~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~~i~~~-~~-----~~g~~V~~~ApTg~Aa----~~L~~~~g~~ 419 (744)
T TIGR02768 350 HYRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLKAAREA-WE-----AAGYRVIGAALSGKAA----EGLQAESGIE 419 (744)
T ss_pred cCCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHHHHHHH-HH-----hCCCeEEEEeCcHHHH----HHHHhccCCc
Confidence 47789999999998875 45799999999999876554433 32 1345689999994433 3444333432
Q ss_pred eEEEecCCCCCccchHHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccC
Q 000384 121 VEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATG 182 (1590)
Q Consensus 121 v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~ 182 (1590)
.. |...++..+..+.-.+...++||+|||-.+..
T Consensus 420 a~----------------------------Ti~~~~~~~~~~~~~~~~~~llIvDEasMv~~ 453 (744)
T TIGR02768 420 SR----------------------------TLASLEYAWANGRDLLSDKDVLVIDEAGMVGS 453 (744)
T ss_pred ee----------------------------eHHHHHhhhccCcccCCCCcEEEEECcccCCH
Confidence 21 11112111122233456778999999988743
|
This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer. |
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.17 Score=52.21 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=20.6
Q ss_pred CCEEEEeCCCChHHHHHHHHHHHHH
Q 000384 60 RNTIAVLETGAGKTMIAVMLIKDIA 84 (1590)
Q Consensus 60 ~n~Ii~~~TGsGKTliailli~~~l 84 (1590)
+.+++.+++|+|||..+..++..+.
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhh
Confidence 6789999999999988777766653
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.034 Score=57.06 Aligned_cols=40 Identities=20% Similarity=0.238 Sum_probs=28.1
Q ss_pred cCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChh
Q 000384 59 RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVH 104 (1590)
Q Consensus 59 ~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~ 104 (1590)
++++++.+|+|+|||..+..++..+.. ....++++.+...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~------~~~~~~~~~~~~~ 41 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGP------PGGGVIYIDGEDI 41 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCC------CCCCEEEECCEEc
Confidence 357899999999999998887766532 1123666666543
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >PRK08727 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.058 Score=61.17 Aligned_cols=25 Identities=28% Similarity=0.222 Sum_probs=20.2
Q ss_pred CEEEEeCCCChHHHHHHHHHHHHHH
Q 000384 61 NTIAVLETGAGKTMIAVMLIKDIAQ 85 (1590)
Q Consensus 61 n~Ii~~~TGsGKTliailli~~~l~ 85 (1590)
-+++++++|+|||..+..+..+..+
T Consensus 43 ~l~l~G~~G~GKThL~~a~~~~~~~ 67 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALALCAAAEQ 67 (233)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4899999999999988876665543
|
|
| >KOG1805 consensus DNA replication helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.078 Score=67.96 Aligned_cols=127 Identities=15% Similarity=0.073 Sum_probs=85.9
Q ss_pred CCCCcHHHHHHHHHHhc--CCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhhcCCc
Q 000384 43 NFIPRIYQLKVFEVAKR--RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFE 120 (1590)
Q Consensus 43 ~~~pR~yQ~e~le~~~~--~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~~~~ 120 (1590)
...+..-|++|+.+++. .-.+|.+-.|+|||.+...+|+-+.. .+++||..+=|..-|...--.++.+ .
T Consensus 667 ~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~------~gkkVLLtsyThsAVDNILiKL~~~---~ 737 (1100)
T KOG1805|consen 667 LLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVA------LGKKVLLTSYTHSAVDNILIKLKGF---G 737 (1100)
T ss_pred HhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHHH------cCCeEEEEehhhHHHHHHHHHHhcc---C
Confidence 44789999999999884 56789999999999998888888776 5667999999877777666555533 2
Q ss_pred eEEEe-cCCCCC--------------ccchHHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccC
Q 000384 121 VEEYY-GAKGVD--------------EWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATG 182 (1590)
Q Consensus 121 v~~~~-G~~~~d--------------~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~ 182 (1590)
...+. |....- ..+.......++...|+.+|-=-+- +-.+...+|+++|+|||-.+.-
T Consensus 738 i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~----~plf~~R~FD~cIiDEASQI~l 810 (1100)
T KOG1805|consen 738 IYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGIN----HPLFVNRQFDYCIIDEASQILL 810 (1100)
T ss_pred cceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCC----chhhhccccCEEEEcccccccc
Confidence 22221 211100 0112233456677888888864432 2234457799999999977643
|
|
| >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.23 Score=61.28 Aligned_cols=119 Identities=22% Similarity=0.177 Sum_probs=66.2
Q ss_pred CCEEEEeCCCChHHHHHHHHHHHHH-HHHHhCCCCeEEEEEecC-hhhHHHHHHHHHhhcCCceEEEecCCCCCccchHH
Q 000384 60 RNTIAVLETGAGKTMIAVMLIKDIA-QAIKSNGFKKLIIFLAPT-VHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQC 137 (1590)
Q Consensus 60 ~n~Ii~~~TGsGKTliailli~~~l-~~~~~~~~~~~vl~LvPt-~~Lv~Qq~~~i~~~~~~~v~~~~G~~~~d~~~~~~ 137 (1590)
+.+++++|||+|||.++..++..+. . .++.+..++-+.+ +.-+..|...+...+++.+.
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~----~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~--------------- 282 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALL----YGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVE--------------- 282 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHh----cCCCeEEEEECCccHHHHHHHHHHHHHHhCCceE---------------
Confidence 3578999999999998888776654 2 1233434443433 11111222222222333221
Q ss_pred HHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCCCcHHHHHHHHHhc-CCCCCcEEEEeccCC
Q 000384 138 WQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHK-SDNKPKVFGMTASPV 211 (1590)
Q Consensus 138 w~~~~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~~~~~~im~~~~~~-~~~~priLgLTATP~ 211 (1590)
.+.++.-+...+.. +.+.++||+|.+-+...+......+..+... ..+....|.|+||..
T Consensus 283 ----------~~~~~~~l~~~l~~----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~ 343 (424)
T PRK05703 283 ----------VVYDPKELAKALEQ----LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK 343 (424)
T ss_pred ----------ccCCHHhHHHHHHH----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC
Confidence 22344444444442 3467999999997765544455556665552 233456788999865
|
|
| >PRK08084 DNA replication initiation factor; Provisional | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.08 Score=60.14 Aligned_cols=26 Identities=15% Similarity=0.190 Sum_probs=21.1
Q ss_pred CCEEEEeCCCChHHHHHHHHHHHHHH
Q 000384 60 RNTIAVLETGAGKTMIAVMLIKDIAQ 85 (1590)
Q Consensus 60 ~n~Ii~~~TGsGKTliailli~~~l~ 85 (1590)
.++++++|+|+|||..+..+..+...
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~ 71 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQ 71 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 57899999999999988776665543
|
|
| >PRK08181 transposase; Validated | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.22 Score=57.29 Aligned_cols=56 Identities=18% Similarity=0.178 Sum_probs=37.1
Q ss_pred cHHHHHHHHHH---h--cCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHH
Q 000384 47 RIYQLKVFEVA---K--RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQ 109 (1590)
Q Consensus 47 R~yQ~e~le~~---~--~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq 109 (1590)
..-|..++..+ . ++|+++++|+|+|||..+..+..++.. .+..|+|+ +...|+.+.
T Consensus 89 ~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~------~g~~v~f~-~~~~L~~~l 149 (269)
T PRK08181 89 SKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIE------NGWRVLFT-RTTDLVQKL 149 (269)
T ss_pred CHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHH------cCCceeee-eHHHHHHHH
Confidence 45566655433 2 489999999999999999988777655 23345554 344555543
|
|
| >PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.052 Score=64.73 Aligned_cols=123 Identities=15% Similarity=0.067 Sum_probs=74.9
Q ss_pred CcHHHHHHHHHHhcCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhhcCCceEEEe
Q 000384 46 PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYY 125 (1590)
Q Consensus 46 pR~yQ~e~le~~~~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~~~~v~~~~ 125 (1590)
+.+=|.+++.. ..++++|.|..|||||.+.+..+..++... ..+...++++++|+..+....+.+...++....
T Consensus 1 l~~eQ~~~i~~-~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~--~~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~~--- 74 (315)
T PF00580_consen 1 LTDEQRRIIRS-TEGPLLVNAGAGSGKTTTLLERIAYLLYEG--GVPPERILVLTFTNAAAQEMRERIRELLEEEQQ--- 74 (315)
T ss_dssp S-HHHHHHHHS--SSEEEEEE-TTSSHHHHHHHHHHHHHHTS--SSTGGGEEEEESSHHHHHHHHHHHHHHHHHCCH---
T ss_pred CCHHHHHHHhC-CCCCEEEEeCCCCCchHHHHHHHHHhhccc--cCChHHheecccCHHHHHHHHHHHHHhcCcccc---
Confidence 35678888887 889999999999999999998888777511 134455999999999999888888875321100
Q ss_pred cCCCCCccchHHHHHhcCCCcEEEEcHHHHHHHHHhcCcCcc--ceeEEEEeccc
Q 000384 126 GAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLD--IVCFIVIDECH 178 (1590)
Q Consensus 126 G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~~~~~l~--~i~lII~DEaH 178 (1590)
.... +............+.|+|...+...+-+.+.... .-++-|+|+..
T Consensus 75 --~~~~--~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 75 --ESSD--NERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp --CCTT---HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred --cccc--cccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 0000 0011112223467889999887554322221111 12355666655
|
THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A .... |
| >PRK06835 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.23 Score=58.99 Aligned_cols=60 Identities=25% Similarity=0.341 Sum_probs=44.0
Q ss_pred CCCCcHHHHHHHHHHh---------cCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHH
Q 000384 43 NFIPRIYQLKVFEVAK---------RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQ 109 (1590)
Q Consensus 43 ~~~pR~yQ~e~le~~~---------~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq 109 (1590)
...||..+..+++.+. +.+++++++||+|||+.+..++.+++. .+..|+|+ +...|..+.
T Consensus 158 ~~~~~~~~~~~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~~------~g~~V~y~-t~~~l~~~l 226 (329)
T PRK06835 158 PLSPRKNMEKILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLD------RGKSVIYR-TADELIEIL 226 (329)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHH------CCCeEEEE-EHHHHHHHH
Confidence 3478999888888654 378999999999999999988888765 23445554 444565544
|
|
| >PRK06893 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.093 Score=59.38 Aligned_cols=25 Identities=8% Similarity=-0.079 Sum_probs=21.0
Q ss_pred CEEEEeCCCChHHHHHHHHHHHHHH
Q 000384 61 NTIAVLETGAGKTMIAVMLIKDIAQ 85 (1590)
Q Consensus 61 n~Ii~~~TGsGKTliailli~~~l~ 85 (1590)
.+++++|+|+|||..+..+..++..
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~ 65 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLL 65 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3689999999999998888777655
|
|
| >PTZ00112 origin recognition complex 1 protein; Provisional | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.48 Score=61.31 Aligned_cols=45 Identities=16% Similarity=0.077 Sum_probs=33.1
Q ss_pred CCCCCCcHHHHHHHHHHhc--------CCEE-EEeCCCChHHHHHHHHHHHHHH
Q 000384 41 SINFIPRIYQLKVFEVAKR--------RNTI-AVLETGAGKTMIAVMLIKDIAQ 85 (1590)
Q Consensus 41 ~~~~~pR~yQ~e~le~~~~--------~n~I-i~~~TGsGKTliailli~~~l~ 85 (1590)
|..+.-|+-|.+.+..++. .++| |+++||+|||.++-.++.++-.
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqe 807 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQH 807 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3456668888887765542 3554 9999999999998888776543
|
|
| >PRK05642 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.093 Score=59.55 Aligned_cols=43 Identities=9% Similarity=0.269 Sum_probs=25.7
Q ss_pred cceeEEEEeccccccCCCcHHHHHHHHHhcCCCCCcEEEEecc
Q 000384 167 DIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTAS 209 (1590)
Q Consensus 167 ~~i~lII~DEaH~~~~~~~~~~im~~~~~~~~~~priLgLTAT 209 (1590)
.+.+++|+|+.|...+...+...+-..+......-+.+.+|++
T Consensus 96 ~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~ 138 (234)
T PRK05642 96 EQYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAAS 138 (234)
T ss_pred hhCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCC
Confidence 3457999999998866544444344344333233355677776
|
|
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.26 Score=58.73 Aligned_cols=119 Identities=19% Similarity=0.113 Sum_probs=64.0
Q ss_pred CCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecCh--hhHHHHHHHHHhhcCCceEEEecCCCCCccchHH
Q 000384 60 RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTV--HLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQC 137 (1590)
Q Consensus 60 ~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~--~Lv~Qq~~~i~~~~~~~v~~~~G~~~~d~~~~~~ 137 (1590)
+.+.++++||+|||..+..+...+.. .+.+..++-+.+- +-+.||.. .....++.+
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~-----~GkkVglI~aDt~RiaAvEQLk~-yae~lgipv---------------- 299 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHG-----KKKTVGFITTDHSRIGTVQQLQD-YVKTIGFEV---------------- 299 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHH-----cCCcEEEEecCCcchHHHHHHHH-HhhhcCCcE----------------
Confidence 45679999999999988887766543 2233344444332 34455443 222222222
Q ss_pred HHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCCCcHHHHHHHHHhcCCCCCcEEEEeccC
Q 000384 138 WQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASP 210 (1590)
Q Consensus 138 w~~~~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~~~~~~im~~~~~~~~~~priLgLTATP 210 (1590)
+.+.++..+.+.+.... .-.+.++|++|-+=+...+.....-+..+.....+.-.+|-|+||-
T Consensus 300 ---------~v~~d~~~L~~aL~~lk-~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATt 362 (436)
T PRK11889 300 ---------IAVRDEAAMTRALTYFK-EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASM 362 (436)
T ss_pred ---------EecCCHHHHHHHHHHHH-hccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCcc
Confidence 11346666666554311 1125789999988766544333333444443333333356677763
|
|
| >PRK13889 conjugal transfer relaxase TraA; Provisional | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.27 Score=66.15 Aligned_cols=57 Identities=12% Similarity=0.015 Sum_probs=42.4
Q ss_pred CCCCcHHHHHHHHHHhc-C-CEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhh
Q 000384 43 NFIPRIYQLKVFEVAKR-R-NTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105 (1590)
Q Consensus 43 ~~~pR~yQ~e~le~~~~-~-n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~L 105 (1590)
.+.+.+-|.+++..+.. + -++|.+..|+|||.+ +..+...++ ..+..|+.++||---
T Consensus 344 g~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e-----~~G~~V~~~ApTGkA 402 (988)
T PRK13889 344 GLVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWE-----AAGYEVRGAALSGIA 402 (988)
T ss_pred CCCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHH-----HcCCeEEEecCcHHH
Confidence 57799999999998885 3 478999999999986 334444443 134568999999543
|
|
| >COG1939 Ribonuclease III family protein [Replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.17 Score=49.41 Aligned_cols=114 Identities=20% Similarity=0.155 Sum_probs=69.0
Q ss_pred CcchhhhhhhhhHhHHHHHHHHhhCCCCCcchhHHHHHHhhchHHHHHHHHhCCCccccccccCCCCcccCCCccCCCCC
Q 000384 1062 SMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPV 1141 (1590)
Q Consensus 1062 n~ErLE~LGDs~Lk~~~s~~l~~~~p~~~eg~ls~~r~~~v~N~~L~~~a~~~gl~~~i~~~~f~~~~w~pp~~~~~~~~ 1141 (1590)
|-=-|.|+||+|+.+.|-.|+....-+ ..+.||..-.+.||-+.=+.+-.. +..++.... ..|.-.|
T Consensus 14 n~laLAy~GDAV~e~yVR~~~l~~g~~-k~~~lH~~a~~~VsAk~QA~il~~--~~~~Lte~E---~~I~KRg------- 80 (132)
T COG1939 14 NGLALAYLGDAVYELYVREYLLLKGKT-KPNDLHKRATAYVSAKAQALILKA--LLEFLTEEE---EEIVKRG------- 80 (132)
T ss_pred CHHHHHHhhhHHHHHHHHHHHHhcccC-ChHHHHHHHHHHhhHHHHHHHHHH--HHHHhhHHH---HHHHHHh-------
Confidence 344689999999999999988776443 688999999999988765544322 111221110 0111111
Q ss_pred CCCCCCCcccccCCCcccccccceecCCcCCCCccccccchhhhHHHHHHHHhhhccChhHHHHHHHHhC
Q 000384 1142 PCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLG 1211 (1590)
Q Consensus 1142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~iAD~vEAliGA~~~~~G~~~a~~~~~~~~ 1211 (1590)
......+. .+.+ -+..=..|..+|||||..|+..-.+.-..++.|..
T Consensus 81 ---------------RNaks~T~---~kn~-----dv~tYr~sTgfEAliGyLyL~~~~eRL~ell~~~i 127 (132)
T COG1939 81 ---------------RNAKSGTK---PKNT-----DVETYRMSTGFEALIGYLYLTKQEERLEELLNKVI 127 (132)
T ss_pred ---------------cccccCCC---CCCC-----ChHHHHHhhhHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 10000000 0000 12223467889999999999999888887777653
|
|
| >TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.14 Score=57.76 Aligned_cols=27 Identities=19% Similarity=0.140 Sum_probs=22.3
Q ss_pred cCCEEEEeCCCChHHHHHHHHHHHHHH
Q 000384 59 RRNTIAVLETGAGKTMIAVMLIKDIAQ 85 (1590)
Q Consensus 59 ~~n~Ii~~~TGsGKTliailli~~~l~ 85 (1590)
..++++.+++|+|||..+..+......
T Consensus 38 ~~~lll~G~~G~GKT~la~~~~~~~~~ 64 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQAACAAAEE 64 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 367999999999999999887766543
|
Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP. |
| >PRK07952 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.31 Score=55.31 Aligned_cols=38 Identities=18% Similarity=0.252 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhc---------CCEEEEeCCCChHHHHHHHHHHHHHH
Q 000384 48 IYQLKVFEVAKR---------RNTIAVLETGAGKTMIAVMLIKDIAQ 85 (1590)
Q Consensus 48 ~yQ~e~le~~~~---------~n~Ii~~~TGsGKTliailli~~~l~ 85 (1590)
+-|..++..+.+ .++++.+++|+|||..+..++.++..
T Consensus 79 ~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~ 125 (244)
T PRK07952 79 EGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLL 125 (244)
T ss_pred chHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 446666665542 46899999999999999988887755
|
|
| >KOG2777 consensus tRNA-specific adenosine deaminase 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.067 Score=65.39 Aligned_cols=64 Identities=27% Similarity=0.289 Sum_probs=49.6
Q ss_pred CCChhhHHHHHHHhcCCcceeeeeeeCc--eEEEEEEEEEcCeEEEEEEEeCCHHHHHHHHHHHHHHHhhh
Q 000384 1356 ELPPLRELIELCDSLGYFVKENCTLKGE--MVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEV 1424 (1590)
Q Consensus 1356 ~~~P~~~L~e~~~~~~~~~~~~~~~~g~--~~~~~~~v~~~g~~~~~~g~g~skk~Ak~~AA~~AL~~L~~ 1424 (1590)
..+|+..|+|+.+ +.... .....|+ ...|.|.|.+||..+ ..| |.|||+||..||..||+.|..
T Consensus 89 ~~npv~ll~e~~~--~~~~~-~~~~~~~~~~~~F~~~~~vdg~~~-~~~-~~sKk~ak~~aa~~al~~l~~ 154 (542)
T KOG2777|consen 89 GKNPVSLLHELAN--GLFFD-FVNESGPQHAPKFVMSVVVDGRWF-EGG-GRSKKEAKQEAAMAALQVLFK 154 (542)
T ss_pred cCCchHHHHHHhc--cccee-eeccCCCCCCceEEEEEEECCEEc-cCC-CcchHHHHHHHHHHHHHHHHh
Confidence 5799999999998 32222 2223343 378999999999844 344 999999999999999999987
|
|
| >TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.3 Score=56.89 Aligned_cols=44 Identities=23% Similarity=0.231 Sum_probs=29.7
Q ss_pred CCCCCCCCcHHHHHHHHHHh---c---CCEEEEeCCCChHHHHHHHHHHH
Q 000384 39 TNSINFIPRIYQLKVFEVAK---R---RNTIAVLETGAGKTMIAVMLIKD 82 (1590)
Q Consensus 39 ~~~~~~~pR~yQ~e~le~~~---~---~n~Ii~~~TGsGKTliailli~~ 82 (1590)
+.+..|-+.+.+.+++..+. . ..+++.+++|+|||..+-.+...
T Consensus 17 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~ 66 (269)
T TIGR03015 17 PDPDFFYPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKR 66 (269)
T ss_pred CCHHHhCCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHh
Confidence 33344556666667776553 1 35789999999999887766544
|
Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems. |
| >COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.55 Score=56.00 Aligned_cols=119 Identities=20% Similarity=0.176 Sum_probs=74.4
Q ss_pred CCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhh-HHHHHHHHHhhcCCceEEEecCCCCCccchHHH
Q 000384 60 RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL-VHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCW 138 (1590)
Q Consensus 60 ~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~L-v~Qq~~~i~~~~~~~v~~~~G~~~~d~~~~~~w 138 (1590)
+.+.+++|||.|||..-.-+...... ..+..+..++-..|-=. +..|.+...+.++++
T Consensus 204 ~vi~LVGPTGVGKTTTlAKLAar~~~---~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp------------------ 262 (407)
T COG1419 204 RVIALVGPTGVGKTTTLAKLAARYVM---LKKKKKVAIITTDTYRIGAVEQLKTYADIMGVP------------------ 262 (407)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHh---hccCcceEEEEeccchhhHHHHHHHHHHHhCCc------------------
Confidence 55789999999999876665554431 13345555665554211 222333333333333
Q ss_pred HHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCCCcHHHHHHHHHhcCCCCCcEEEEeccC
Q 000384 139 QKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASP 210 (1590)
Q Consensus 139 ~~~~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~~~~~~im~~~~~~~~~~priLgLTATP 210 (1590)
-.+|-+|+-|...+. .+.+.++|.+|=+-+-..+..+..-|+.|.....+.-.-|.|+||-
T Consensus 263 -------~~vv~~~~el~~ai~----~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~ 323 (407)
T COG1419 263 -------LEVVYSPKELAEAIE----ALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATT 323 (407)
T ss_pred -------eEEecCHHHHHHHHH----HhhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCc
Confidence 345567777766654 3567799999988776555566777888776665556668999984
|
|
| >smart00492 HELICc3 helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.12 Score=53.32 Aligned_cols=44 Identities=30% Similarity=0.365 Sum_probs=34.4
Q ss_pred CHHHHHHHHHHhcCCC-ceEEEEcccccccccCCC--ccEEEEccCC
Q 000384 459 TPKVQKEVLESFRGGK-VNLLFATDVIEEGMHVPN--CSYVIRFDLP 502 (1590)
Q Consensus 459 ~~~~r~~vl~~Fr~g~-~~vLVaT~vleeGIDip~--~~~VI~fD~p 502 (1590)
...+..++++.|++.. .-||++|.-+.||||+|+ |..||....|
T Consensus 32 ~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glP 78 (141)
T smart00492 32 DGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLP 78 (141)
T ss_pred ChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecC
Confidence 3445678999998754 369999988999999997 7788876655
|
|
| >PRK00149 dnaA chromosomal replication initiation protein; Reviewed | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.23 Score=62.40 Aligned_cols=46 Identities=11% Similarity=0.143 Sum_probs=30.9
Q ss_pred CEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHH
Q 000384 61 NTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYD 111 (1590)
Q Consensus 61 n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~ 111 (1590)
.+++++++|+|||..+..+..++.+ ..++..++++ +...+..+...
T Consensus 150 ~l~l~G~~G~GKThL~~ai~~~~~~----~~~~~~v~yi-~~~~~~~~~~~ 195 (450)
T PRK00149 150 PLFIYGGVGLGKTHLLHAIGNYILE----KNPNAKVVYV-TSEKFTNDFVN 195 (450)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHH----hCCCCeEEEE-EHHHHHHHHHH
Confidence 4789999999999998887776654 2334556665 44455544333
|
|
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.31 Score=57.95 Aligned_cols=120 Identities=17% Similarity=0.133 Sum_probs=66.5
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEe-cC--hhhHHHHHHHHHhhcCCceEEEecCCCCCccchHHH
Q 000384 62 TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLA-PT--VHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCW 138 (1590)
Q Consensus 62 ~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~Lv-Pt--~~Lv~Qq~~~i~~~~~~~v~~~~G~~~~d~~~~~~w 138 (1590)
+++++++|+|||.+...++..+.. .+.+++++. .+ .+-+.|+ +.....+++++.. +..+.+.
T Consensus 143 i~~~G~~GvGKTTtiakLA~~l~~------~g~~V~li~~Dt~R~~a~eqL-~~~a~~lgv~v~~--~~~g~dp------ 207 (336)
T PRK14974 143 IVFVGVNGTGKTTTIAKLAYYLKK------NGFSVVIAAGDTFRAGAIEQL-EEHAERLGVKVIK--HKYGADP------ 207 (336)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH------cCCeEEEecCCcCcHHHHHHH-HHHHHHcCCceec--ccCCCCH------
Confidence 568999999999988777765433 223344443 32 3444554 3344455655432 1111110
Q ss_pred HHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCCCcHHHHHHHHHhcCCCCCcEEEEeccCC
Q 000384 139 QKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPV 211 (1590)
Q Consensus 139 ~~~~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~~~~~~im~~~~~~~~~~priLgLTATP~ 211 (1590)
..++.+.+... ...+.++||+|.+++...+.....-++.+.....+.-.+|.++|+..
T Consensus 208 -------------~~v~~~ai~~~--~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g 265 (336)
T PRK14974 208 -------------AAVAYDAIEHA--KARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAG 265 (336)
T ss_pred -------------HHHHHHHHHHH--HhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccc
Confidence 01122222221 12456899999999886554444445555444455566788888753
|
|
| >KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.089 Score=59.46 Aligned_cols=43 Identities=23% Similarity=0.200 Sum_probs=33.0
Q ss_pred CCCCCcHHHHHHHHHHhc-------CCEEEEeCCCChHHHHHHHHHHHHH
Q 000384 42 INFIPRIYQLKVFEVAKR-------RNTIAVLETGAGKTMIAVMLIKDIA 84 (1590)
Q Consensus 42 ~~~~pR~yQ~e~le~~~~-------~n~Ii~~~TGsGKTliailli~~~l 84 (1590)
..+.--.+|..++..+++ -+.+.++|.|+|||-+|..+.+++.
T Consensus 33 kt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~ 82 (346)
T KOG0989|consen 33 KTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALN 82 (346)
T ss_pred CcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhc
Confidence 344444588888877653 4679999999999999999888764
|
|
| >TIGR00604 rad3 DNA repair helicase (rad3) | Back alignment and domain information |
|---|
Probab=93.71 E-value=0.24 Score=65.77 Aligned_cols=97 Identities=16% Similarity=0.285 Sum_probs=64.1
Q ss_pred HHHHHHHHhcCCCCCcEEEEEEehHHHHHHHHHHHhhCCCC---CCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcC----
Q 000384 400 HELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFL---THLTVAYLTGSTTSVDALTPKVQKEVLESFRG---- 472 (1590)
Q Consensus 400 ~~L~~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~~---~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~---- 472 (1590)
..+.+.+.++-......++||.++-...+.+.+.+...... ...+..++-+.+ ..++.+++++|+.
T Consensus 508 ~~l~~~i~~~~~~~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~~-------~~~~~~~l~~f~~~~~~ 580 (705)
T TIGR00604 508 RNLGELLVEFSKIIPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETKD-------AQETSDALERYKQAVSE 580 (705)
T ss_pred HHHHHHHHHHhhcCCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCCC-------cchHHHHHHHHHHHHhc
Confidence 44555554433333456899999988887777766542110 111233444442 2467889999964
Q ss_pred CCceEEEEc--ccccccccCCC--ccEEEEccCCC
Q 000384 473 GKVNLLFAT--DVIEEGMHVPN--CSYVIRFDLPK 503 (1590)
Q Consensus 473 g~~~vLVaT--~vleeGIDip~--~~~VI~fD~p~ 503 (1590)
|.-.||+|+ ..+.||||+++ |..||...+|.
T Consensus 581 ~~gavL~av~gGk~sEGIDf~~~~~r~ViivGlPf 615 (705)
T TIGR00604 581 GRGAVLLSVAGGKVSEGIDFCDDLGRAVIMVGIPY 615 (705)
T ss_pred CCceEEEEecCCcccCccccCCCCCcEEEEEccCC
Confidence 455699999 78999999997 89999888775
|
All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PF13871 Helicase_C_4: Helicase_C-like | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.14 Score=58.53 Aligned_cols=64 Identities=19% Similarity=0.337 Sum_probs=54.6
Q ss_pred HHHHHhcCCCceEEEEcccccccccCCC--------ccEEEEccCCCCHHHHHHHhccccccCce----EEEEecc
Q 000384 465 EVLESFRGGKVNLLFATDVIEEGMHVPN--------CSYVIRFDLPKTVSSYIQSRGRARQHNSQ----FILMLER 528 (1590)
Q Consensus 465 ~vl~~Fr~g~~~vLVaT~vleeGIDip~--------~~~VI~fD~p~s~~~yiQr~GRA~R~gs~----~ivlv~~ 528 (1590)
...+.|.+|+..|+|-+.+++.||-+.+ -.+-|...+||+....+|..||++|.|+. |.+++..
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~ 127 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTD 127 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecC
Confidence 5667899999999999999999998875 23457789999999999999999999985 7766654
|
|
| >TIGR02928 orc1/cdc6 family replication initiation protein | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.67 Score=56.67 Aligned_cols=43 Identities=26% Similarity=0.338 Sum_probs=33.7
Q ss_pred CCCCCcHHHHHHHHHHhc--------CCEEEEeCCCChHHHHHHHHHHHHH
Q 000384 42 INFIPRIYQLKVFEVAKR--------RNTIAVLETGAGKTMIAVMLIKDIA 84 (1590)
Q Consensus 42 ~~~~pR~yQ~e~le~~~~--------~n~Ii~~~TGsGKTliailli~~~l 84 (1590)
..+.=|+-|.+.+..++. .+++|++|+|+|||.++-.++.++.
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~ 65 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELE 65 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 356779999987766542 5799999999999998877776654
|
Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other. |
| >smart00491 HELICc2 helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.36 Score=49.96 Aligned_cols=42 Identities=29% Similarity=0.458 Sum_probs=32.9
Q ss_pred HHHHHHHHhcCCCc---eEEEEccc--ccccccCCC--ccEEEEccCCC
Q 000384 462 VQKEVLESFRGGKV---NLLFATDV--IEEGMHVPN--CSYVIRFDLPK 503 (1590)
Q Consensus 462 ~r~~vl~~Fr~g~~---~vLVaT~v--leeGIDip~--~~~VI~fD~p~ 503 (1590)
+..+++++|++..- .||+++.- +.||||+|+ |+.||....|.
T Consensus 32 ~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 32 ETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred hHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 33688999987543 58888876 999999997 88998877653
|
|
| >TIGR00362 DnaA chromosomal replication initiator protein DnaA | Back alignment and domain information |
|---|
Probab=93.44 E-value=0.34 Score=60.08 Aligned_cols=36 Identities=17% Similarity=0.244 Sum_probs=26.2
Q ss_pred CEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEe
Q 000384 61 NTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLA 100 (1590)
Q Consensus 61 n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~Lv 100 (1590)
.+++++++|+|||..+..+..++.+ ..++..++++.
T Consensus 138 ~l~l~G~~G~GKThL~~ai~~~l~~----~~~~~~v~yi~ 173 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLLHAIGNEILE----NNPNAKVVYVS 173 (405)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHH----hCCCCcEEEEE
Confidence 4689999999999998877766654 23345566664
|
DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). |
| >PRK14087 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=93.06 E-value=0.32 Score=60.67 Aligned_cols=48 Identities=17% Similarity=0.171 Sum_probs=30.4
Q ss_pred CEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHH
Q 000384 61 NTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVI 113 (1590)
Q Consensus 61 n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i 113 (1590)
.+++++++|+|||..+..+..++.. ..++.+++++.. ..+..+....+
T Consensus 143 pl~i~G~~G~GKTHLl~Ai~~~l~~----~~~~~~v~yv~~-~~f~~~~~~~l 190 (450)
T PRK14087 143 PLFIYGESGMGKTHLLKAAKNYIES----NFSDLKVSYMSG-DEFARKAVDIL 190 (450)
T ss_pred ceEEECCCCCcHHHHHHHHHHHHHH----hCCCCeEEEEEH-HHHHHHHHHHH
Confidence 4789999999999877665554433 234555666554 45555444443
|
|
| >PRK14088 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=92.97 E-value=0.5 Score=58.90 Aligned_cols=38 Identities=16% Similarity=0.170 Sum_probs=27.5
Q ss_pred CCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEec
Q 000384 60 RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAP 101 (1590)
Q Consensus 60 ~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvP 101 (1590)
..+++++++|+|||..+..+..++.+ ..++.+++|+..
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~----~~~~~~v~yi~~ 168 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQ----NEPDLRVMYITS 168 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHH----hCCCCeEEEEEH
Confidence 35899999999999988877666554 334455777654
|
|
| >PRK13826 Dtr system oriT relaxase; Provisional | Back alignment and domain information |
|---|
Probab=92.90 E-value=1.1 Score=60.89 Aligned_cols=69 Identities=14% Similarity=-0.021 Sum_probs=48.2
Q ss_pred CCCCcHHHHHHHHHHhc--CCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhhcCCc
Q 000384 43 NFIPRIYQLKVFEVAKR--RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFE 120 (1590)
Q Consensus 43 ~~~pR~yQ~e~le~~~~--~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~~~~ 120 (1590)
.+.+.+-|.++++.+.. +-++|.++-|+|||.+.-.+.. .++ ..+..|+-++||-- .++.++..+|+.
T Consensus 379 ~~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~~~~~-~~e-----~~G~~V~g~ApTgk----AA~~L~e~~Gi~ 448 (1102)
T PRK13826 379 HARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMKAARE-AWE-----AAGYRVVGGALAGK----AAEGLEKEAGIQ 448 (1102)
T ss_pred CCCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHHHHHH-HHH-----HcCCeEEEEcCcHH----HHHHHHHhhCCC
Confidence 47899999999998753 4578999999999986555433 332 13456889999943 445566555554
Q ss_pred e
Q 000384 121 V 121 (1590)
Q Consensus 121 v 121 (1590)
.
T Consensus 449 a 449 (1102)
T PRK13826 449 S 449 (1102)
T ss_pred e
Confidence 3
|
|
| >COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.88 E-value=1.1 Score=54.21 Aligned_cols=43 Identities=19% Similarity=0.247 Sum_probs=35.1
Q ss_pred CCCCcHHHHHHHHHHh--------cCCEEEEeCCCChHHHHHHHHHHHHHH
Q 000384 43 NFIPRIYQLKVFEVAK--------RRNTIAVLETGAGKTMIAVMLIKDIAQ 85 (1590)
Q Consensus 43 ~~~pR~yQ~e~le~~~--------~~n~Ii~~~TGsGKTliailli~~~l~ 85 (1590)
.+.-|+-|.+-+..++ ..|++|.++||+|||.++-.++.++..
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~ 68 (366)
T COG1474 18 ELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEE 68 (366)
T ss_pred cccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHh
Confidence 3777999998776654 167999999999999999888877755
|
|
| >PRK00411 cdc6 cell division control protein 6; Reviewed | Back alignment and domain information |
|---|
Probab=92.77 E-value=0.97 Score=55.90 Aligned_cols=44 Identities=20% Similarity=0.222 Sum_probs=32.6
Q ss_pred CCCCCcHHHHHHHHHHh-----c---CCEEEEeCCCChHHHHHHHHHHHHHH
Q 000384 42 INFIPRIYQLKVFEVAK-----R---RNTIAVLETGAGKTMIAVMLIKDIAQ 85 (1590)
Q Consensus 42 ~~~~pR~yQ~e~le~~~-----~---~n~Ii~~~TGsGKTliailli~~~l~ 85 (1590)
..+.-|+-|.+.+...+ + .+++|++++|+|||.++-.++.++..
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~ 81 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEE 81 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45666888877665553 1 57999999999999988777766543
|
|
| >PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging [] | Back alignment and domain information |
|---|
Probab=92.70 E-value=0.18 Score=56.91 Aligned_cols=41 Identities=15% Similarity=0.370 Sum_probs=28.1
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhH
Q 000384 62 TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106 (1590)
Q Consensus 62 ~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv 106 (1590)
.+|++|||+||+.. ++.++....-......|+||+|++..+
T Consensus 90 ~~VYGPTG~GKSqL----lRNLis~~lI~P~PETVfFItP~~~mI 130 (369)
T PF02456_consen 90 GVVYGPTGSGKSQL----LRNLISCQLIQPPPETVFFITPQKDMI 130 (369)
T ss_pred EEEECCCCCCHHHH----HHHhhhcCcccCCCCceEEECCCCCCC
Confidence 47999999999963 444433111234556799999998654
|
During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription |
| >KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.60 E-value=0.077 Score=62.24 Aligned_cols=63 Identities=21% Similarity=0.199 Sum_probs=49.0
Q ss_pred hhHHHHHHhCCCCCCceeEeecccccccccccCCcccccceeeEEEEEEEecCCceEEEeCCCCCCccchhhhHHHHHHH
Q 000384 1498 TSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAALIMLH 1577 (1590)
Q Consensus 1498 ~~L~e~~~~~~~~~P~y~~~~~~~~~~~~~~~Gp~h~~~~~~F~~~v~i~~~~~~~~~~~g~~~~sKK~A~~~AA~~~l~ 1577 (1590)
-.|+||+|+-....|.|+..+- ..++ .-|...|++.. .-+++|.| +|||.||..||+.+|.
T Consensus 379 CiLhEy~q~~lk~~pvyef~e~---------~n~s-----tpysa~v~~d~----~~yGsG~g-~sKK~Ak~~AAR~tLe 439 (650)
T KOG4334|consen 379 CILHEYAQQCLKSLPVYEFAEN---------DNNS-----TPYSAGVLPDL----FPYGSGVG-ASKKTAKLVAARDTLE 439 (650)
T ss_pred ehHHHHHHHHhhhcceeehhhc---------cCCC-----Ccccccccccc----cccccccc-cchHHHHHHHHHHHHH
Confidence 6899999999999999987653 3332 35777787743 33455666 6799999999999999
Q ss_pred HH
Q 000384 1578 EL 1579 (1590)
Q Consensus 1578 ~l 1579 (1590)
.|
T Consensus 440 iL 441 (650)
T KOG4334|consen 440 IL 441 (650)
T ss_pred Hh
Confidence 87
|
|
| >PRK14086 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=92.55 E-value=2.3 Score=54.29 Aligned_cols=46 Identities=11% Similarity=0.057 Sum_probs=29.5
Q ss_pred CEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHH
Q 000384 61 NTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYD 111 (1590)
Q Consensus 61 n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~ 111 (1590)
.++|++++|+|||+.+..+..++.. ..++.+++|+. ...++.+...
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~----~~~g~~V~Yit-aeef~~el~~ 361 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARR----LYPGTRVRYVS-SEEFTNEFIN 361 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHH----hCCCCeEEEee-HHHHHHHHHH
Confidence 3889999999999987776665543 22344566544 3455554433
|
|
| >PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins | Back alignment and domain information |
|---|
Probab=92.44 E-value=0.27 Score=59.81 Aligned_cols=70 Identities=19% Similarity=0.182 Sum_probs=47.1
Q ss_pred CcHHHHHHHHHHh-------cCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHH--HHHHHhh
Q 000384 46 PRIYQLKVFEVAK-------RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQ--YDVIRVH 116 (1590)
Q Consensus 46 pR~yQ~e~le~~~-------~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq--~~~i~~~ 116 (1590)
+.+=|.++++.++ ..++.|.++-|+|||++.-.++..+ . ..++.+++++||-.-+... -..+.+.
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~-~-----~~~~~~~~~a~tg~AA~~i~~G~T~hs~ 75 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYL-R-----SRGKKVLVTAPTGIAAFNIPGGRTIHSF 75 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHh-c-----cccceEEEecchHHHHHhccCCcchHHh
Confidence 5677999988883 3778999999999999765554443 2 2456799999995544333 2344445
Q ss_pred cCCce
Q 000384 117 TDFEV 121 (1590)
Q Consensus 117 ~~~~v 121 (1590)
+++.+
T Consensus 76 f~i~~ 80 (364)
T PF05970_consen 76 FGIPI 80 (364)
T ss_pred cCccc
Confidence 55443
|
The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ]. |
| >PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins | Back alignment and domain information |
|---|
Probab=92.33 E-value=0.34 Score=55.78 Aligned_cols=61 Identities=16% Similarity=0.083 Sum_probs=37.3
Q ss_pred CCEEEEeCCCChHHHHHHHHHHHHHHHHHh-CCCCeEEEEEecChhhHHHHHHHHHhhcCCc
Q 000384 60 RNTIAVLETGAGKTMIAVMLIKDIAQAIKS-NGFKKLIIFLAPTVHLVHQQYDVIRVHTDFE 120 (1590)
Q Consensus 60 ~n~Ii~~~TGsGKTliailli~~~l~~~~~-~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~~~~ 120 (1590)
.|.+|+++||-|||.++--+.+..-..... ....+.+.+-+|..+=..-.+..|-..++..
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP 123 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAP 123 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcc
Confidence 689999999999998764444332111001 1112456666777776666666666665543
|
TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition []. |
| >PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication | Back alignment and domain information |
|---|
Probab=92.31 E-value=0.61 Score=52.33 Aligned_cols=41 Identities=15% Similarity=0.277 Sum_probs=25.2
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHH
Q 000384 62 TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVH 107 (1590)
Q Consensus 62 ~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~ 107 (1590)
+.|++++|+|||.....+..++.. ..++.+|+++... ....
T Consensus 37 l~l~G~~G~GKTHLL~Ai~~~~~~----~~~~~~v~y~~~~-~f~~ 77 (219)
T PF00308_consen 37 LFLYGPSGLGKTHLLQAIANEAQK----QHPGKRVVYLSAE-EFIR 77 (219)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHH----HCTTS-EEEEEHH-HHHH
T ss_pred eEEECCCCCCHHHHHHHHHHHHHh----ccccccceeecHH-HHHH
Confidence 789999999999965554444433 3345556665543 4433
|
DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A. |
| >PRK14956 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=92.07 E-value=0.37 Score=59.41 Aligned_cols=23 Identities=39% Similarity=0.417 Sum_probs=20.5
Q ss_pred EEEEeCCCChHHHHHHHHHHHHH
Q 000384 62 TIAVLETGAGKTMIAVMLIKDIA 84 (1590)
Q Consensus 62 ~Ii~~~TGsGKTliailli~~~l 84 (1590)
.|+++|.|+|||.+|..+++.+.
T Consensus 43 ~Lf~GP~GtGKTTlAriLAk~Ln 65 (484)
T PRK14956 43 YIFFGPRGVGKTTIARILAKRLN 65 (484)
T ss_pred EEEECCCCCCHHHHHHHHHHhcC
Confidence 69999999999999998887764
|
|
| >PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=92.05 E-value=1.7 Score=56.71 Aligned_cols=116 Identities=16% Similarity=0.141 Sum_probs=63.1
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChh--hHHHHHHHHHhhcCCceEEEecCCCCCccchHHHH
Q 000384 62 TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVH--LVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQ 139 (1590)
Q Consensus 62 ~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~--Lv~Qq~~~i~~~~~~~v~~~~G~~~~d~~~~~~w~ 139 (1590)
+.+++|||+|||.+...+...+.. ..+.++..++-+.+-- -++| ...+....++.+
T Consensus 188 i~lVGpnGvGKTTTiaKLA~~~~~---~~G~kkV~lit~Dt~RigA~eQ-L~~~a~~~gvpv------------------ 245 (767)
T PRK14723 188 LALVGPTGVGKTTTTAKLAARCVA---REGADQLALLTTDSFRIGALEQ-LRIYGRILGVPV------------------ 245 (767)
T ss_pred EEEECCCCCcHHHHHHHHHhhHHH---HcCCCeEEEecCcccchHHHHH-HHHHHHhCCCCc------------------
Confidence 469999999999988777665432 1222343343333311 2233 333333333322
Q ss_pred HhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCCCcHHHHHHHHHhcCCCCCcEEEEeccC
Q 000384 140 KEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASP 210 (1590)
Q Consensus 140 ~~~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~~~~~~im~~~~~~~~~~priLgLTATP 210 (1590)
.++.+++.+.+.+.. +.+.++|+||=+=+...+......+..+.....+.-.+|.|+||-
T Consensus 246 -------~~~~~~~~l~~al~~----~~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~ 305 (767)
T PRK14723 246 -------HAVKDAADLRFALAA----LGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAAS 305 (767)
T ss_pred -------cccCCHHHHHHHHHH----hcCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCC
Confidence 223467777666653 346689999988765444233333333322233445678888884
|
|
| >PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=91.88 E-value=1.9 Score=49.80 Aligned_cols=120 Identities=19% Similarity=0.135 Sum_probs=65.3
Q ss_pred CCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecC--hhhHHHHHHHHHhhcCCceEEEecCCCCCccchHH
Q 000384 60 RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPT--VHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQC 137 (1590)
Q Consensus 60 ~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt--~~Lv~Qq~~~i~~~~~~~v~~~~G~~~~d~~~~~~ 137 (1590)
..+.+++++|+|||..+..+...+.. ......++-+.+ ...+.||..... ..++.+..
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~-----~~~~v~~i~~D~~ri~~~~ql~~~~~-~~~~~~~~-------------- 135 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHG-----KKKTVGFITTDHSRIGTVQQLQDYVK-TIGFEVIA-------------- 135 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHH-----cCCeEEEEecCCCCHHHHHHHHHHhh-hcCceEEe--------------
Confidence 46789999999999988777665432 122333333333 256667665433 22322211
Q ss_pred HHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCCCcHHHHHHHHHhcCCCCCcEEEEeccCC
Q 000384 138 WQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPV 211 (1590)
Q Consensus 138 w~~~~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~~~~~~im~~~~~~~~~~priLgLTATP~ 211 (1590)
..++..+.+.+..- -...+.++||+|-+=+...+.....-|..+.....+.-.+|-|+||-.
T Consensus 136 -----------~~~~~~l~~~l~~l-~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~ 197 (270)
T PRK06731 136 -----------VRDEAAMTRALTYF-KEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK 197 (270)
T ss_pred -----------cCCHHHHHHHHHHH-HhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC
Confidence 12444444444321 112457999999986654443334444444443333345678888743
|
|
| >PRK12402 replication factor C small subunit 2; Reviewed | Back alignment and domain information |
|---|
Probab=91.87 E-value=0.9 Score=54.80 Aligned_cols=41 Identities=15% Similarity=0.158 Sum_probs=30.1
Q ss_pred CCCcHHHHHHHHHHhc--C--CEEEEeCCCChHHHHHHHHHHHHH
Q 000384 44 FIPRIYQLKVFEVAKR--R--NTIAVLETGAGKTMIAVMLIKDIA 84 (1590)
Q Consensus 44 ~~pR~yQ~e~le~~~~--~--n~Ii~~~TGsGKTliailli~~~l 84 (1590)
+--++...+.+..+.. + ++++.+|+|+|||..+..+.+.+.
T Consensus 17 ~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 17 ILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred hcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 3345666666665543 3 689999999999999988877664
|
|
| >PRK00771 signal recognition particle protein Srp54; Provisional | Back alignment and domain information |
|---|
Probab=91.84 E-value=1.6 Score=53.86 Aligned_cols=120 Identities=18% Similarity=0.102 Sum_probs=60.3
Q ss_pred CEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecC-hhhHHHHHHHHHhhcCCceEEEecCCCCCccchHHHH
Q 000384 61 NTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPT-VHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQ 139 (1590)
Q Consensus 61 n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt-~~Lv~Qq~~~i~~~~~~~v~~~~G~~~~d~~~~~~w~ 139 (1590)
.+++++++|+|||.++..++..+.. .+.+..++-+.+ ++-+.+|...+....++.+.... ...+
T Consensus 97 vI~lvG~~GsGKTTtaakLA~~L~~-----~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~--~~~d-------- 161 (437)
T PRK00771 97 TIMLVGLQGSGKTTTAAKLARYFKK-----KGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDP--DNKD-------- 161 (437)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH-----cCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecC--CccC--------
Confidence 3679999999999999888776543 223333343433 23233444444445555432110 0000
Q ss_pred HhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCCCcHHHHHHHHHhcCCCCCcEEEEeccC
Q 000384 140 KEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASP 210 (1590)
Q Consensus 140 ~~~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~~~~~~im~~~~~~~~~~priLgLTATP 210 (1590)
...++.+.+... ...++||+|.+-+...+.....-++.+.....+.--+|-+.||.
T Consensus 162 -----------~~~i~~~al~~~----~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~ 217 (437)
T PRK00771 162 -----------AVEIAKEGLEKF----KKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATI 217 (437)
T ss_pred -----------HHHHHHHHHHHh----hcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccc
Confidence 112233333321 22388999999554332222222333333333445567777765
|
|
| >PRK08116 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=91.70 E-value=1.6 Score=50.62 Aligned_cols=61 Identities=20% Similarity=0.335 Sum_probs=39.3
Q ss_pred CCCcHHHHHHHHHHh----------cCC--EEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHH
Q 000384 44 FIPRIYQLKVFEVAK----------RRN--TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYD 111 (1590)
Q Consensus 44 ~~pR~yQ~e~le~~~----------~~n--~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~ 111 (1590)
|...+.|..++..+. ..+ +++.+++|+|||+.|..++.++.. . +..++|+ +...|..+...
T Consensus 87 f~~~~~~~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~~----~--~~~v~~~-~~~~ll~~i~~ 159 (268)
T PRK08116 87 FLFDKGSEKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIANELIE----K--GVPVIFV-NFPQLLNRIKS 159 (268)
T ss_pred ccCChHHHHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHH----c--CCeEEEE-EHHHHHHHHHH
Confidence 334556665555543 234 899999999999999988887765 1 3335444 44556555443
|
|
| >KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.66 E-value=0.33 Score=60.69 Aligned_cols=149 Identities=19% Similarity=0.191 Sum_probs=84.7
Q ss_pred CCCcHHHHHHHHHHh-----------cCCEEEEeCCCChHHHHHHHHHHH-HHHHHHhCCCCeEEEEEecChhhHHHHHH
Q 000384 44 FIPRIYQLKVFEVAK-----------RRNTIAVLETGAGKTMIAVMLIKD-IAQAIKSNGFKKLIIFLAPTVHLVHQQYD 111 (1590)
Q Consensus 44 ~~pR~yQ~e~le~~~-----------~~n~Ii~~~TGsGKTliailli~~-~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~ 111 (1590)
=.+...|.|++--+- +-..+|.+..|.||-....-+|.+ .++ +++++|++.=+..|-..-.+
T Consensus 263 g~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLk------GRKrAlW~SVSsDLKfDAER 336 (1300)
T KOG1513|consen 263 GHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLK------GRKRALWFSVSSDLKFDAER 336 (1300)
T ss_pred cchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhc------ccceeEEEEeccccccchhh
Confidence 346788999886552 134688888888886644444433 333 44556666666678666556
Q ss_pred HHHhh--cCCceEEE--------ecCCCCCccchHHHHHhcCCCcEEEEcHHHHHHHHHhc-------C-----cCccce
Q 000384 112 VIRVH--TDFEVEEY--------YGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA-------F-----LSLDIV 169 (1590)
Q Consensus 112 ~i~~~--~~~~v~~~--------~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~~-------~-----~~l~~i 169 (1590)
.++.. +++.|..+ .+..+.. -+-.|+++||..|.-.-+.. + +.-.++
T Consensus 337 DL~DigA~~I~V~alnK~KYakIss~en~n-----------~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~f 405 (1300)
T KOG1513|consen 337 DLRDIGATGIAVHALNKFKYAKISSKENTN-----------TKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDF 405 (1300)
T ss_pred chhhcCCCCccceehhhcccccccccccCC-----------ccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhcc
Confidence 66553 23444333 2211111 13479999999885433210 1 111222
Q ss_pred -eEEEEeccccccCCCc---------HHHHHHHHHhcCCCCCcEEEEeccCC
Q 000384 170 -CFIVIDECHHATGNHP---------YTKIMKEFYHKSDNKPKVFGMTASPV 211 (1590)
Q Consensus 170 -~lII~DEaH~~~~~~~---------~~~im~~~~~~~~~~priLgLTATP~ 211 (1590)
.+|||||||.++.-.| ...++. +.+.-+..|++--|||-.
T Consensus 406 eGvIvfDECHkAKNL~p~~~~k~TKtG~tVLd--LQk~LP~ARVVYASATGA 455 (1300)
T KOG1513|consen 406 EGVIVFDECHKAKNLVPTAGAKSTKTGKTVLD--LQKKLPNARVVYASATGA 455 (1300)
T ss_pred ceeEEehhhhhhcccccccCCCcCcccHhHHH--HHHhCCCceEEEeeccCC
Confidence 5899999999975221 122222 233346789999999843
|
|
| >PRK11054 helD DNA helicase IV; Provisional | Back alignment and domain information |
|---|
Probab=91.65 E-value=0.67 Score=60.75 Aligned_cols=72 Identities=15% Similarity=0.087 Sum_probs=56.3
Q ss_pred CCCcHHHHHHHHHHhcCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhhcC
Q 000384 44 FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTD 118 (1590)
Q Consensus 44 ~~pR~yQ~e~le~~~~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~~ 118 (1590)
..+.+-|.+++... ..+++|.+..|||||.+.+..+..++.. .......+++|+.|+..+....+.+...++
T Consensus 195 ~~L~~~Q~~av~~~-~~~~lV~agaGSGKT~vl~~r~ayLl~~--~~~~~~~IL~ltft~~AA~em~eRL~~~lg 266 (684)
T PRK11054 195 SPLNPSQARAVVNG-EDSLLVLAGAGSGKTSVLVARAGWLLAR--GQAQPEQILLLAFGRQAAEEMDERIRERLG 266 (684)
T ss_pred CCCCHHHHHHHhCC-CCCeEEEEeCCCCHHHHHHHHHHHHHHh--CCCCHHHeEEEeccHHHHHHHHHHHHHhcC
Confidence 57899999998644 3678999999999999999888887752 112345699999999999888887776643
|
|
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=91.61 E-value=1.6 Score=45.92 Aligned_cols=38 Identities=24% Similarity=0.343 Sum_probs=27.7
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhh
Q 000384 62 TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105 (1590)
Q Consensus 62 ~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~L 105 (1590)
++|.+++|+|||..+..++..... .+..++|+.....+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~------~~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT------KGGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh------cCCEEEEEECCcch
Confidence 689999999999998888776643 34456776665444
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >PRK12377 putative replication protein; Provisional | Back alignment and domain information |
|---|
Probab=91.43 E-value=1.2 Score=50.71 Aligned_cols=45 Identities=13% Similarity=0.186 Sum_probs=31.8
Q ss_pred CCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHH
Q 000384 60 RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYD 111 (1590)
Q Consensus 60 ~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~ 111 (1590)
.++++.+++|+|||..+..+..++.. .+..++| ++...|..+...
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~------~g~~v~~-i~~~~l~~~l~~ 146 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLA------KGRSVIV-VTVPDVMSRLHE 146 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH------cCCCeEE-EEHHHHHHHHHH
Confidence 57899999999999999998888765 2233444 444466665443
|
|
| >PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A | Back alignment and domain information |
|---|
Probab=91.30 E-value=2 Score=45.64 Aligned_cols=121 Identities=14% Similarity=0.110 Sum_probs=59.4
Q ss_pred CCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhhcCCceEEEecCCCCCccchHHHH
Q 000384 60 RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQ 139 (1590)
Q Consensus 60 ~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~~~~v~~~~G~~~~d~~~~~~w~ 139 (1590)
+..|+.+|.|+||+..|..+++.++.. ..... -+....-+ ..+.....-.+..+...........
T Consensus 20 ha~L~~G~~g~gk~~~a~~~a~~ll~~---~~~~~----~c~~c~~c----~~~~~~~~~d~~~~~~~~~~~~i~i---- 84 (162)
T PF13177_consen 20 HALLFHGPSGSGKKTLALAFARALLCS---NPNED----PCGECRSC----RRIEEGNHPDFIIIKPDKKKKSIKI---- 84 (162)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHC-T---T-CTT------SSSHHH----HHHHTT-CTTEEEEETTTSSSSBSH----
T ss_pred eeEEEECCCCCCHHHHHHHHHHHHcCC---CCCCC----CCCCCHHH----HHHHhccCcceEEEecccccchhhH----
Confidence 346999999999999999999887651 11111 22222222 2333333334444433322111111
Q ss_pred HhcCCCcEEEEcHHHHHHHHHhcCc--CccceeEEEEeccccccCCCcHHHHHHHHHhcCCCCCcEEEEeccC
Q 000384 140 KEINKNDVLVMTPQILLDALRKAFL--SLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASP 210 (1590)
Q Consensus 140 ~~~~~~~VlV~T~q~L~~~l~~~~~--~l~~i~lII~DEaH~~~~~~~~~~im~~~~~~~~~~priLgLTATP 210 (1590)
+.+.+....-.. ......++|+||||.+..+ ..+.++|. +-..+...+++++|-.|
T Consensus 85 -------------~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~-a~NaLLK~-LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 85 -------------DQIREIIEFLSLSPSEGKYKVIIIDEADKLTEE-AQNALLKT-LEEPPENTYFILITNNP 142 (162)
T ss_dssp -------------HHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HH-HHHHHHHH-HHSTTTTEEEEEEES-G
T ss_pred -------------HHHHHHHHHHHHHHhcCCceEEEeehHhhhhHH-HHHHHHHH-hcCCCCCEEEEEEECCh
Confidence 222222222111 1246889999999998653 44445443 22333445556665443
|
... |
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=91.25 E-value=0.49 Score=51.61 Aligned_cols=48 Identities=13% Similarity=0.065 Sum_probs=33.3
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhh
Q 000384 62 TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVH 116 (1590)
Q Consensus 62 ~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~ 116 (1590)
++|.+++|+|||..+..++.+.+. .+..++|+... .-..|..+.++.+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~------~g~~v~~~s~e-~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA------RGEPGLYVTLE-ESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH------CCCcEEEEECC-CCHHHHHHHHHHc
Confidence 689999999999999988887665 23447777653 4445555554433
|
A related protein is found in archaea. |
| >PRK12422 chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=91.25 E-value=0.71 Score=57.44 Aligned_cols=40 Identities=13% Similarity=0.180 Sum_probs=27.9
Q ss_pred CEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHH
Q 000384 61 NTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVH 107 (1590)
Q Consensus 61 n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~ 107 (1590)
.+++++++|+|||..+..+..++.. .+.+++++.. ..+..
T Consensus 143 pl~L~G~~G~GKTHLl~Ai~~~l~~------~~~~v~yi~~-~~f~~ 182 (445)
T PRK12422 143 PIYLFGPEGSGKTHLMQAAVHALRE------SGGKILYVRS-ELFTE 182 (445)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHH------cCCCEEEeeH-HHHHH
Confidence 4789999999999998887776654 2344666653 34443
|
|
| >PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif | Back alignment and domain information |
|---|
Probab=91.11 E-value=0.35 Score=52.30 Aligned_cols=43 Identities=23% Similarity=0.353 Sum_probs=30.1
Q ss_pred cCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHH
Q 000384 59 RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQ 108 (1590)
Q Consensus 59 ~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Q 108 (1590)
++|+++.+++|+|||+.|..++.+++. .+..++|+ +...|+..
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~------~g~~v~f~-~~~~L~~~ 89 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIR------KGYSVLFI-TASDLLDE 89 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHH------TT--EEEE-EHHHHHHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhcc------CCcceeEe-ecCceecc
Confidence 388999999999999999999888776 33446664 44455543
|
They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A. |
| >PRK08903 DnaA regulatory inactivator Hda; Validated | Back alignment and domain information |
|---|
Probab=91.10 E-value=0.82 Score=51.71 Aligned_cols=26 Identities=23% Similarity=0.275 Sum_probs=21.4
Q ss_pred CCEEEEeCCCChHHHHHHHHHHHHHH
Q 000384 60 RNTIAVLETGAGKTMIAVMLIKDIAQ 85 (1590)
Q Consensus 60 ~n~Ii~~~TGsGKTliailli~~~l~ 85 (1590)
+++++.+++|+|||..+..+..+...
T Consensus 43 ~~~~l~G~~G~GKT~La~ai~~~~~~ 68 (227)
T PRK08903 43 RFFYLWGEAGSGRSHLLQALVADASY 68 (227)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 57999999999999988877666543
|
|
| >PRK10919 ATP-dependent DNA helicase Rep; Provisional | Back alignment and domain information |
|---|
Probab=90.98 E-value=0.39 Score=63.32 Aligned_cols=88 Identities=13% Similarity=0.047 Sum_probs=66.6
Q ss_pred CCcHHHHHHHHHHhcCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhhcCCceEEE
Q 000384 45 IPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEY 124 (1590)
Q Consensus 45 ~pR~yQ~e~le~~~~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~~~~v~~~ 124 (1590)
.+.+-|.+++.. ...+++|.+..|||||.+.+..|.+++.. ..-+..++++|+-|+..+....+.+.+.++..
T Consensus 2 ~Ln~~Q~~av~~-~~g~~lV~AgpGSGKT~vL~~Ria~Li~~--~~v~p~~IL~lTFT~kAA~em~~Rl~~~l~~~---- 74 (672)
T PRK10919 2 RLNPGQQQAVEF-VTGPCLVLAGAGSGKTRVITNKIAHLIRG--CGYQARHIAAVTFTNKAAREMKERVAQTLGRK---- 74 (672)
T ss_pred CCCHHHHHHHhC-CCCCEEEEecCCCCHHHHHHHHHHHHHHh--cCCCHHHeeeEechHHHHHHHHHHHHHHhCcc----
Confidence 478889999864 46789999999999999999988888752 12234569999999999988888887765310
Q ss_pred ecCCCCCccchHHHHHhcCCCcEEEEcHHHHHH
Q 000384 125 YGAKGVDEWDSQCWQKEINKNDVLVMTPQILLD 157 (1590)
Q Consensus 125 ~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~ 157 (1590)
....|.|+|...|..
T Consensus 75 ------------------~~~~v~i~TfHS~~~ 89 (672)
T PRK10919 75 ------------------EARGLMISTFHTLGL 89 (672)
T ss_pred ------------------cccCcEEEcHHHHHH
Confidence 013578999988743
|
|
| >PRK12727 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=90.96 E-value=1.9 Score=53.73 Aligned_cols=118 Identities=18% Similarity=0.152 Sum_probs=60.1
Q ss_pred CCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEE-ecC-hhhHHHHHHHHHhhcCCceEEEecCCCCCccchHH
Q 000384 60 RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFL-APT-VHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQC 137 (1590)
Q Consensus 60 ~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~L-vPt-~~Lv~Qq~~~i~~~~~~~v~~~~G~~~~d~~~~~~ 137 (1590)
+.+.++++||+|||..+..++..+.. .+.++++.++ ..+ +.-...|.......+++.+..
T Consensus 351 ~vIaLVGPtGvGKTTtaakLAa~la~----~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~-------------- 412 (559)
T PRK12727 351 GVIALVGPTGAGKTTTIAKLAQRFAA----QHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHE-------------- 412 (559)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH----hcCCCceEEEecccccccHHHHHHHhhcccCceeEe--------------
Confidence 45779999999999988877766543 1222234333 322 222222222222222322211
Q ss_pred HHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCCCcHHHHHHHHHhcCCCCCcEEEEeccCC
Q 000384 138 WQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPV 211 (1590)
Q Consensus 138 w~~~~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~~~~~~im~~~~~~~~~~priLgLTATP~ 211 (1590)
+.+...+...+.. +.+.++||+|.+-....+......+..+.. ....-.+|.+++++.
T Consensus 413 -----------a~d~~~L~~aL~~----l~~~DLVLIDTaG~s~~D~~l~eeL~~L~a-a~~~a~lLVLpAtss 470 (559)
T PRK12727 413 -----------ADSAESLLDLLER----LRDYKLVLIDTAGMGQRDRALAAQLNWLRA-ARQVTSLLVLPANAH 470 (559)
T ss_pred -----------cCcHHHHHHHHHH----hccCCEEEecCCCcchhhHHHHHHHHHHHH-hhcCCcEEEEECCCC
Confidence 1233344444442 346789999999765433233333332211 123356788888753
|
|
| >PHA02533 17 large terminase protein; Provisional | Back alignment and domain information |
|---|
Probab=90.80 E-value=1.5 Score=55.76 Aligned_cols=71 Identities=18% Similarity=0.199 Sum_probs=51.6
Q ss_pred CCCCCcHHHHHHHHHHh-cCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhh
Q 000384 42 INFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVH 116 (1590)
Q Consensus 42 ~~~~pR~yQ~e~le~~~-~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~ 116 (1590)
..+.|+|+|.+++..+. ++-.++..+=..|||.++..++..... ..++..+++++|+..-+....+.++..
T Consensus 56 ~Pf~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~----~~~~~~v~i~A~~~~QA~~vF~~ik~~ 127 (534)
T PHA02533 56 IKVQMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVC----FNKDKNVGILAHKASMAAEVLDRTKQA 127 (534)
T ss_pred eecCCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHH----hCCCCEEEEEeCCHHHHHHHHHHHHHH
Confidence 45899999999998764 344578888999999987754443322 123457999999988777777666653
|
|
| >PRK12726 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=90.70 E-value=2 Score=51.39 Aligned_cols=103 Identities=19% Similarity=0.146 Sum_probs=53.9
Q ss_pred CCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecCh--hhHHHHHHHHHhhcCCceEEEecCCCCCccchHH
Q 000384 60 RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTV--HLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQC 137 (1590)
Q Consensus 60 ~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~--~Lv~Qq~~~i~~~~~~~v~~~~G~~~~d~~~~~~ 137 (1590)
+.+.+++|+|+|||..+..+...+.. .+.+..++-+.+- +-+.||....+ ..++.+.
T Consensus 207 ~ii~lvGptGvGKTTt~akLA~~l~~-----~g~~V~lItaDtyR~gAveQLk~yae-~lgvpv~--------------- 265 (407)
T PRK12726 207 RIISLIGQTGVGKTTTLVKLGWQLLK-----QNRTVGFITTDTFRSGAVEQFQGYAD-KLDVELI--------------- 265 (407)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH-----cCCeEEEEeCCccCccHHHHHHHHhh-cCCCCEE---------------
Confidence 45679999999999988877765533 1233334444432 12445443222 2222221
Q ss_pred HHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCCCcHHHHHHHHH
Q 000384 138 WQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFY 194 (1590)
Q Consensus 138 w~~~~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~~~~~~im~~~~ 194 (1590)
++.+|+-+.+.+.... ...+.++|++|=+=+...+.....-++.+.
T Consensus 266 ----------~~~dp~dL~~al~~l~-~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~ 311 (407)
T PRK12726 266 ----------VATSPAELEEAVQYMT-YVNCVDHILIDTVGRNYLAEESVSEISAYT 311 (407)
T ss_pred ----------ecCCHHHHHHHHHHHH-hcCCCCEEEEECCCCCccCHHHHHHHHHHh
Confidence 2235665655544211 124578999998755433323333344443
|
|
| >cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases | Back alignment and domain information |
|---|
Probab=90.67 E-value=2.2 Score=49.69 Aligned_cols=113 Identities=13% Similarity=0.038 Sum_probs=59.0
Q ss_pred CCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhh-cCCceEEEecCCCCCccchH--
Q 000384 60 RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVH-TDFEVEEYYGAKGVDEWDSQ-- 136 (1590)
Q Consensus 60 ~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~-~~~~v~~~~G~~~~d~~~~~-- 136 (1590)
..++|.+++|+|||..+..++.+.+. ..+..|+|+.--- -..+....+... .+..+..... ...+..+
T Consensus 31 ~~~~i~g~~G~GKT~l~~~~~~~~~~-----~~g~~vl~iS~E~-~~~~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~ 101 (271)
T cd01122 31 ELIILTAGTGVGKTTFLREYALDLIT-----QHGVRVGTISLEE-PVVRTARRLLGQYAGKRLHLPDT---VFIYTLEEF 101 (271)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHH-----hcCceEEEEEccc-CHHHHHHHHHHHHhCCCcccCCc---cccccHHHH
Confidence 56789999999999988887776654 1144577766422 234444444332 3433322111 1112222
Q ss_pred -HHHHhcCC-CcEEEE------cHHHHHHHHHhcCcCccceeEEEEeccccccC
Q 000384 137 -CWQKEINK-NDVLVM------TPQILLDALRKAFLSLDIVCFIVIDECHHATG 182 (1590)
Q Consensus 137 -~w~~~~~~-~~VlV~------T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~ 182 (1590)
.|...+.. ..+.+. |.+.+...+... ..-.++++||||..+.+..
T Consensus 102 ~~~~~~~~~~~~l~i~d~~~~~~~~~i~~~i~~~-~~~~~~~~vvID~l~~l~~ 154 (271)
T cd01122 102 DAAFDEFEGTGRLFMYDSFGEYSMDSVLEKVRYM-AVSHGIQHIIIDNLSIMVS 154 (271)
T ss_pred HHHHHHhcCCCcEEEEcCCCccCHHHHHHHHHHH-HhcCCceEEEECCHHHHhc
Confidence 22222222 222222 445555544321 1223678999999988754
|
Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands. |
| >PRK14949 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=90.66 E-value=0.59 Score=61.38 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=20.2
Q ss_pred EEEEeCCCChHHHHHHHHHHHHH
Q 000384 62 TIAVLETGAGKTMIAVMLIKDIA 84 (1590)
Q Consensus 62 ~Ii~~~TGsGKTliailli~~~l 84 (1590)
.|+++|.|+|||.+|-.+.+.+.
T Consensus 41 yLFtGPpGtGKTTLARiLAk~Ln 63 (944)
T PRK14949 41 YLFTGTRGVGKTSLARLFAKGLN 63 (944)
T ss_pred EEEECCCCCCHHHHHHHHHHhcc
Confidence 48999999999999998887764
|
|
| >TIGR03499 FlhF flagellar biosynthetic protein FlhF | Back alignment and domain information |
|---|
Probab=90.56 E-value=1.2 Score=51.97 Aligned_cols=25 Identities=28% Similarity=0.182 Sum_probs=20.5
Q ss_pred CEEEEeCCCChHHHHHHHHHHHHHH
Q 000384 61 NTIAVLETGAGKTMIAVMLIKDIAQ 85 (1590)
Q Consensus 61 n~Ii~~~TGsGKTliailli~~~l~ 85 (1590)
.+++++|||+|||..+..++..+..
T Consensus 196 vi~~vGptGvGKTTt~~kLa~~~~~ 220 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAKLAARFVL 220 (282)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4679999999999998887776643
|
|
| >PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA | Back alignment and domain information |
|---|
Probab=90.52 E-value=0.69 Score=59.31 Aligned_cols=164 Identities=11% Similarity=0.114 Sum_probs=96.5
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHhc---CCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHH-
Q 000384 36 SSSTNSINFIPRIYQLKVFEVAKR---RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYD- 111 (1590)
Q Consensus 36 ~~~~~~~~~~pR~yQ~e~le~~~~---~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~- 111 (1590)
+..+-+-.....|||.|.++.+-. +.+.+..++-+|||.+....|-..+. ..+ ..++++.||..++..+.+
T Consensus 7 s~~pG~w~~~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~----~~P-~~~l~v~Pt~~~a~~~~~~ 81 (557)
T PF05876_consen 7 SAEPGPWRTDRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSID----QDP-GPMLYVQPTDDAAKDFSKE 81 (557)
T ss_pred CCCCCCCCCCCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEE----eCC-CCEEEEEEcHHHHHHHHHH
Confidence 333334455889999999999875 67899999999999977776655543 233 348999999999988763
Q ss_pred HHHhhcC----CceEEEecCCCCCccchHHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCC----
Q 000384 112 VIRVHTD----FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGN---- 183 (1590)
Q Consensus 112 ~i~~~~~----~~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~---- 183 (1590)
.|.-.+. ++ ..+......+. ......+.+.+..+.+.....- ..+....+.+|++||.+....+
T Consensus 82 rl~Pmi~~sp~l~-~~~~~~~~~~~-~~t~~~k~f~gg~l~~~ga~S~------~~l~s~~~r~~~~DEvD~~p~~~~~e 153 (557)
T PF05876_consen 82 RLDPMIRASPVLR-RKLSPSKSRDS-GNTILYKRFPGGFLYLVGANSP------SNLRSRPARYLLLDEVDRYPDDVGGE 153 (557)
T ss_pred HHHHHHHhCHHHH-HHhCchhhccc-CCchhheecCCCEEEEEeCCCC------cccccCCcCEEEEechhhccccCccC
Confidence 4443321 11 11211010010 1112233444555555543322 1234466889999999998532
Q ss_pred -CcHHHHHHHHHhcCCCCCcEEEEeccCCccC
Q 000384 184 -HPYTKIMKEFYHKSDNKPKVFGMTASPVVRK 214 (1590)
Q Consensus 184 -~~~~~im~~~~~~~~~~priLgLTATP~~~~ 214 (1590)
+|.....++.-.. ..-+.+.+..||....
T Consensus 154 Gdp~~la~~R~~tf--~~~~K~~~~STPt~~~ 183 (557)
T PF05876_consen 154 GDPVELAEKRTKTF--GSNRKILRISTPTIEG 183 (557)
T ss_pred CCHHHHHHHHHhhh--ccCcEEEEeCCCCCCC
Confidence 3555444432111 1234566677888653
|
The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities []. |
| >TIGR02881 spore_V_K stage V sporulation protein K | Back alignment and domain information |
|---|
Probab=90.48 E-value=0.58 Score=54.18 Aligned_cols=25 Identities=32% Similarity=0.258 Sum_probs=21.3
Q ss_pred CCEEEEeCCCChHHHHHHHHHHHHH
Q 000384 60 RNTIAVLETGAGKTMIAVMLIKDIA 84 (1590)
Q Consensus 60 ~n~Ii~~~TGsGKTliailli~~~l 84 (1590)
.++++.+|+|+|||.+|-.+...+.
T Consensus 43 ~~vll~GppGtGKTtlA~~ia~~l~ 67 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARILGKLFK 67 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999988776653
|
Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group. |
| >PRK12724 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=90.40 E-value=2.8 Score=51.01 Aligned_cols=116 Identities=16% Similarity=0.101 Sum_probs=61.6
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecC-hhhHHHHHHHHHhhcCCceEEEecCCCCCccchHHHHH
Q 000384 62 TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPT-VHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQK 140 (1590)
Q Consensus 62 ~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt-~~Lv~Qq~~~i~~~~~~~v~~~~G~~~~d~~~~~~w~~ 140 (1590)
+++++|+|+|||.++..++..... ..+.+..++-+.+ +..+..|........++.+.
T Consensus 226 i~lvGptGvGKTTtaaKLA~~~~~----~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~------------------ 283 (432)
T PRK12724 226 VFFVGPTGSGKTTSIAKLAAKYFL----HMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFY------------------ 283 (432)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH----hcCCeEEEecccchhhhHHHHHHHHHHhcCCCee------------------
Confidence 568999999999999888765432 1223334444443 33333333333333333221
Q ss_pred hcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCCCcHHHHHHHHHhcCC---CCCcEEEEeccCC
Q 000384 141 EINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSD---NKPKVFGMTASPV 211 (1590)
Q Consensus 141 ~~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~~~~~~im~~~~~~~~---~~priLgLTATP~ 211 (1590)
.+..+..+...+. -.+.++||+|=+-+...+.....-|..+..... +.-.+|.|+||-.
T Consensus 284 -------~~~~~~~l~~~l~-----~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~ 345 (432)
T PRK12724 284 -------PVKDIKKFKETLA-----RDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSS 345 (432)
T ss_pred -------ehHHHHHHHHHHH-----hCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCC
Confidence 0111222333332 246789999977655444344444555544322 2346788999854
|
|
| >PLN03025 replication factor C subunit; Provisional | Back alignment and domain information |
|---|
Probab=90.38 E-value=1.1 Score=53.71 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=21.7
Q ss_pred CCEEEEeCCCChHHHHHHHHHHHHH
Q 000384 60 RNTIAVLETGAGKTMIAVMLIKDIA 84 (1590)
Q Consensus 60 ~n~Ii~~~TGsGKTliailli~~~l 84 (1590)
.+.++++|.|+|||..+..+.+++.
T Consensus 35 ~~lll~Gp~G~GKTtla~~la~~l~ 59 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILALAHELL 59 (319)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHh
Confidence 4689999999999999988877764
|
|
| >PRK07764 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=90.34 E-value=1.3 Score=58.95 Aligned_cols=24 Identities=25% Similarity=0.253 Sum_probs=21.3
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHH
Q 000384 62 TIAVLETGAGKTMIAVMLIKDIAQ 85 (1590)
Q Consensus 62 ~Ii~~~TGsGKTliailli~~~l~ 85 (1590)
.|++++.|+|||.+|..+.+.+..
T Consensus 40 ~Lf~Gp~G~GKTt~A~~lAr~L~C 63 (824)
T PRK07764 40 YLFSGPRGCGKTSSARILARSLNC 63 (824)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCc
Confidence 689999999999999998888753
|
|
| >PRK14964 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=90.03 E-value=1.2 Score=55.80 Aligned_cols=104 Identities=19% Similarity=0.155 Sum_probs=54.5
Q ss_pred CCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhhcCCceEEEecCCCCCccchHHHH
Q 000384 60 RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQ 139 (1590)
Q Consensus 60 ~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~~~~v~~~~G~~~~d~~~~~~w~ 139 (1590)
+..|+++|.|+|||.+|..+.+.+... .++... -|.. |. ....+.......+..+.+..... .+..+
T Consensus 36 ha~Lf~Gp~G~GKTT~ArilAk~LnC~---~~~~~~---pCg~---C~-~C~~i~~~~~~Dv~eidaas~~~---vddIR 102 (491)
T PRK14964 36 QSILLVGASGVGKTTCARIISLCLNCS---NGPTSD---PCGT---CH-NCISIKNSNHPDVIEIDAASNTS---VDDIK 102 (491)
T ss_pred ceEEEECCCCccHHHHHHHHHHHHcCc---CCCCCC---Cccc---cH-HHHHHhccCCCCEEEEecccCCC---HHHHH
Confidence 468999999999999998887766431 111100 0111 11 23344444455666665532111 11111
Q ss_pred HhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCCCcHHHHHHH
Q 000384 140 KEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKE 192 (1590)
Q Consensus 140 ~~~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~~~~~~im~~ 192 (1590)
.. .+..... -...+..++|+||+|.+.. +.++.+++.
T Consensus 103 ~I--------------ie~~~~~-P~~~~~KVvIIDEah~Ls~-~A~NaLLK~ 139 (491)
T PRK14964 103 VI--------------LENSCYL-PISSKFKVYIIDEVHMLSN-SAFNALLKT 139 (491)
T ss_pred HH--------------HHHHHhc-cccCCceEEEEeChHhCCH-HHHHHHHHH
Confidence 11 1111111 1135678999999998854 356666553
|
|
| >PRK13833 conjugal transfer protein TrbB; Provisional | Back alignment and domain information |
|---|
Probab=89.49 E-value=0.74 Score=54.39 Aligned_cols=56 Identities=27% Similarity=0.295 Sum_probs=39.5
Q ss_pred CcHHHHHHHHHHh--cCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhh
Q 000384 46 PRIYQLKVFEVAK--RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105 (1590)
Q Consensus 46 pR~yQ~e~le~~~--~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~L 105 (1590)
..+.|.+.+..+. +.|+||+++||||||...-.++..+.. ..+..+++.+=.+.+|
T Consensus 129 ~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll~aL~~~i~~----~~~~~rivtiEd~~El 186 (323)
T PRK13833 129 MTEAQASVIRSAIDSRLNIVISGGTGSGKTTLANAVIAEIVA----SAPEDRLVILEDTAEI 186 (323)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHhc----CCCCceEEEecCCccc
Confidence 4567888887775 489999999999999876655554432 2344567776667666
|
|
| >PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport | Back alignment and domain information |
|---|
Probab=89.48 E-value=0.47 Score=48.16 Aligned_cols=22 Identities=27% Similarity=0.309 Sum_probs=18.4
Q ss_pred EEEEeCCCChHHHHHHHHHHHH
Q 000384 62 TIAVLETGAGKTMIAVMLIKDI 83 (1590)
Q Consensus 62 ~Ii~~~TGsGKTliailli~~~ 83 (1590)
+++.+|.|+|||..+-.++..+
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 5899999999999887776654
|
Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G .... |
| >PRK14960 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=89.30 E-value=0.97 Score=57.61 Aligned_cols=24 Identities=33% Similarity=0.343 Sum_probs=20.7
Q ss_pred CEEEEeCCCChHHHHHHHHHHHHH
Q 000384 61 NTIAVLETGAGKTMIAVMLIKDIA 84 (1590)
Q Consensus 61 n~Ii~~~TGsGKTliailli~~~l 84 (1590)
..|+++|.|+|||.+|..+++.+.
T Consensus 39 AyLF~GPpGvGKTTlAriLAK~Ln 62 (702)
T PRK14960 39 AYLFTGTRGVGKTTIARILAKCLN 62 (702)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 359999999999999988887764
|
|
| >TIGR00959 ffh signal recognition particle protein | Back alignment and domain information |
|---|
Probab=89.20 E-value=3.5 Score=50.86 Aligned_cols=58 Identities=19% Similarity=0.134 Sum_probs=36.5
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecC-hhhHHHHHHHHHhhcCCceEE
Q 000384 62 TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPT-VHLVHQQYDVIRVHTDFEVEE 123 (1590)
Q Consensus 62 ~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt-~~Lv~Qq~~~i~~~~~~~v~~ 123 (1590)
+++++++|+|||.++.-++..+.. ..+.+.+++=+.+ ++-+.+|.+......++++..
T Consensus 102 i~~vG~~GsGKTTtaakLA~~l~~----~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~ 160 (428)
T TIGR00959 102 ILMVGLQGSGKTTTCGKLAYYLKK----KQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFA 160 (428)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHH----hCCCeEEEEeccccchHHHHHHHHHHHhcCCceEe
Confidence 679999999999999988877542 1233444444443 334455555555556666543
|
This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. |
| >PRK05707 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=89.16 E-value=1.7 Score=51.76 Aligned_cols=41 Identities=15% Similarity=0.086 Sum_probs=34.3
Q ss_pred CCcHHHHHHHHHHhc-----CCEEEEeCCCChHHHHHHHHHHHHHH
Q 000384 45 IPRIYQLKVFEVAKR-----RNTIAVLETGAGKTMIAVMLIKDIAQ 85 (1590)
Q Consensus 45 ~pR~yQ~e~le~~~~-----~n~Ii~~~TGsGKTliailli~~~l~ 85 (1590)
..+|||...++.+.. .-.++.+|.|.|||..|..+++.++-
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC 48 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALLC 48 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHcC
Confidence 358999999999874 33689999999999999998888764
|
|
| >COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=88.94 E-value=0.98 Score=51.81 Aligned_cols=49 Identities=14% Similarity=0.228 Sum_probs=37.9
Q ss_pred cCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHH
Q 000384 59 RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIR 114 (1590)
Q Consensus 59 ~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~ 114 (1590)
+.|+++.+++|+|||+.|+.+..+++. .+. -+..+++..|+.+....+.
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~------~g~-sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLK------AGI-SVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHH------cCC-eEEEEEHHHHHHHHHHHHh
Confidence 479999999999999999998888765 233 3455777788887766554
|
|
| >COG3973 Superfamily I DNA and RNA helicases [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.86 E-value=0.61 Score=57.37 Aligned_cols=62 Identities=18% Similarity=0.206 Sum_probs=43.5
Q ss_pred HHHHHHHHhcCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHH
Q 000384 50 QLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYD 111 (1590)
Q Consensus 50 Q~e~le~~~~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~ 111 (1590)
|-+++..-++.-.||.+..|||||.+|+-.+..++...+..-..+-++++.|.+.+..=...
T Consensus 217 QneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYis~ 278 (747)
T COG3973 217 QNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYISR 278 (747)
T ss_pred HHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHHHH
Confidence 33333333345578999999999999999888887644444344459999999887654333
|
|
| >COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=88.70 E-value=6.9 Score=47.52 Aligned_cols=38 Identities=18% Similarity=0.252 Sum_probs=24.7
Q ss_pred CCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEec
Q 000384 60 RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAP 101 (1590)
Q Consensus 60 ~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvP 101 (1590)
.-+.+++++|+|||+..-.+-.+..+ .++..+++++..
T Consensus 114 nplfi~G~~GlGKTHLl~Aign~~~~----~~~~a~v~y~~s 151 (408)
T COG0593 114 NPLFIYGGVGLGKTHLLQAIGNEALA----NGPNARVVYLTS 151 (408)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHh----hCCCceEEeccH
Confidence 34789999999999876655444443 344445555443
|
|
| >PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot) | Back alignment and domain information |
|---|
Probab=88.48 E-value=0.6 Score=51.28 Aligned_cols=44 Identities=20% Similarity=0.247 Sum_probs=24.4
Q ss_pred ceeEEEEeccccccCCCcH-----HHHHHHHHhcCCCCCcEEEEeccCC
Q 000384 168 IVCFIVIDECHHATGNHPY-----TKIMKEFYHKSDNKPKVFGMTASPV 211 (1590)
Q Consensus 168 ~i~lII~DEaH~~~~~~~~-----~~im~~~~~~~~~~priLgLTATP~ 211 (1590)
.-.+||+||||..-..... ...+..+-...+..--++++|=.|.
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~~~~~~~~l~~hRh~g~diiliTQ~~~ 127 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKKVPEIIEFLAQHRHYGWDIILITQSPS 127 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T----HHHHGGGGCCCTT-EEEEEES-GG
T ss_pred CCcEEEEECChhhcCCCccccccchHHHHHHHHhCcCCcEEEEEeCCHH
Confidence 4479999999988654333 2344333223445678888887764
|
Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B. |
| >PRK13894 conjugal transfer ATPase TrbB; Provisional | Back alignment and domain information |
|---|
Probab=88.43 E-value=0.89 Score=53.87 Aligned_cols=55 Identities=20% Similarity=0.278 Sum_probs=39.0
Q ss_pred cHHHHHHHHHHh--cCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhh
Q 000384 47 RIYQLKVFEVAK--RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105 (1590)
Q Consensus 47 R~yQ~e~le~~~--~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~L 105 (1590)
.+.|.+.+..+. ++|++|+++||||||...-.++..+.. ..+..+++.+-.+.+|
T Consensus 134 ~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~aL~~~~~~----~~~~~rivtIEd~~El 190 (319)
T PRK13894 134 TAAQREAIIAAVRAHRNILVIGGTGSGKTTLVNAIINEMVI----QDPTERVFIIEDTGEI 190 (319)
T ss_pred CHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHhhhh----cCCCceEEEEcCCCcc
Confidence 456788887764 589999999999999766666554432 2344567777777666
|
|
| >PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional | Back alignment and domain information |
|---|
Probab=88.41 E-value=1.2 Score=54.31 Aligned_cols=40 Identities=28% Similarity=0.355 Sum_probs=28.6
Q ss_pred CCCcHHHHHHHHHHh-cCCEEEEeCCCChHHHHHHHHHHHH
Q 000384 44 FIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDI 83 (1590)
Q Consensus 44 ~~pR~yQ~e~le~~~-~~n~Ii~~~TGsGKTliailli~~~ 83 (1590)
+-+..-...++..+. ++|+|+.+++|+|||.+|-.+...+
T Consensus 178 ~i~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~~la~~l 218 (459)
T PRK11331 178 FIPETTIETILKRLTIKKNIILQGPPGVGKTFVARRLAYLL 218 (459)
T ss_pred cCCHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHh
Confidence 344445555555554 6999999999999999987665543
|
|
| >TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB | Back alignment and domain information |
|---|
Probab=88.34 E-value=2.8 Score=49.34 Aligned_cols=53 Identities=34% Similarity=0.435 Sum_probs=36.8
Q ss_pred HHHHHHHHHh--cCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhh
Q 000384 49 YQLKVFEVAK--RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105 (1590)
Q Consensus 49 yQ~e~le~~~--~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~L 105 (1590)
-|.+.+..+. ++|++|+++||||||...-.++..+.. ..+..+++.+=.+.+|
T Consensus 120 ~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i~~----~~~~~ri~tiEd~~El 174 (299)
T TIGR02782 120 AQRDVLREAVLARKNILVVGGTGSGKTTLANALLAEIAK----NDPTDRVVIIEDTREL 174 (299)
T ss_pred HHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHhhc----cCCCceEEEECCchhh
Confidence 3556666665 489999999999999877666544422 2235567777777666
|
The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA. |
| >cd00984 DnaB_C DnaB helicase C terminal domain | Back alignment and domain information |
|---|
Probab=88.28 E-value=1.5 Score=50.08 Aligned_cols=113 Identities=17% Similarity=0.247 Sum_probs=57.2
Q ss_pred CCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecC---hhhHHHHHHHHHhhcCCceEEE-ecCCCCCccch
Q 000384 60 RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPT---VHLVHQQYDVIRVHTDFEVEEY-YGAKGVDEWDS 135 (1590)
Q Consensus 60 ~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt---~~Lv~Qq~~~i~~~~~~~v~~~-~G~~~~d~~~~ 135 (1590)
.-++|.+++|+|||..+..++.+.+. ..+..++|+..- ..++.+. +....++....+ .|......|..
T Consensus 14 ~l~lI~G~~G~GKT~~~~~~~~~~~~-----~~g~~vly~s~E~~~~~~~~r~---~~~~~~~~~~~~~~~~~~~~~~~~ 85 (242)
T cd00984 14 DLIIIAARPSMGKTAFALNIAENIAK-----KQGKPVLFFSLEMSKEQLLQRL---LASESGISLSKLRTGSLSDEDWER 85 (242)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHH-----hCCCceEEEeCCCCHHHHHHHH---HHHhcCCCHHHHhcCCCCHHHHHH
Confidence 45789999999999998888777665 114457777743 2333222 222333332211 12111112211
Q ss_pred -HHHHHhcCCCcEEE-----EcHHHHHHHHHhcCcCccceeEEEEecccccc
Q 000384 136 -QCWQKEINKNDVLV-----MTPQILLDALRKAFLSLDIVCFIVIDECHHAT 181 (1590)
Q Consensus 136 -~~w~~~~~~~~VlV-----~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~ 181 (1590)
..+........+.| .|.+-+.+.+.... .-.++++||||=.+.+.
T Consensus 86 ~~~~~~~~~~~~~~i~~~~~~~~~~l~~~i~~~~-~~~~~~~vvID~l~~l~ 136 (242)
T cd00984 86 LAEAIGELKELPIYIDDSSSLTVSDIRSRARRLK-KEHGLGLIVIDYLQLMS 136 (242)
T ss_pred HHHHHHHHhcCCEEEeCCCCCCHHHHHHHHHHHH-HhcCCCEEEEcCchhcC
Confidence 11111222334444 24555555444321 12267899999877654
|
The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. |
| >COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=88.17 E-value=1.8 Score=51.27 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=19.8
Q ss_pred CCEEEEeCCCChHHHHHHHHHHH
Q 000384 60 RNTIAVLETGAGKTMIAVMLIKD 82 (1590)
Q Consensus 60 ~n~Ii~~~TGsGKTliailli~~ 82 (1590)
.+.|+++|.|+|||-+|-++...
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA~~ 71 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIAGT 71 (436)
T ss_pred ceeEEECCCCCCHHHHHHHHHHh
Confidence 67899999999999998876554
|
|
| >PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=88.15 E-value=4.2 Score=49.91 Aligned_cols=119 Identities=14% Similarity=0.105 Sum_probs=61.2
Q ss_pred CEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChh-hHHHHHHHHHhhcCCceEEEecCCCCCccchHHHH
Q 000384 61 NTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVH-LVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQ 139 (1590)
Q Consensus 61 n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~-Lv~Qq~~~i~~~~~~~v~~~~G~~~~d~~~~~~w~ 139 (1590)
-+.++++||+|||.....+...... ..++.+..++.+++.- =+.+|...+.+.+|+.+...
T Consensus 193 vi~lvGpnG~GKTTtlakLA~~~~~---~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v--------------- 254 (420)
T PRK14721 193 VYALIGPTGVGKTTTTAKLAARAVI---RHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSI--------------- 254 (420)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH---hcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecC---------------
Confidence 3679999999999877665543322 1223444566666522 23344555555555544322
Q ss_pred HhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCCCcHHHHHHHHHhcCCCCCcEEEEeccCC
Q 000384 140 KEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPV 211 (1590)
Q Consensus 140 ~~~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~~~~~~im~~~~~~~~~~priLgLTATP~ 211 (1590)
.++.-+...+. .+.+.+++++|.+=+...+......++.+.....+.-.+|.|+||-.
T Consensus 255 ----------~~~~dl~~al~----~l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~ 312 (420)
T PRK14721 255 ----------KDIADLQLMLH----ELRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSS 312 (420)
T ss_pred ----------CCHHHHHHHHH----HhcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCC
Confidence 12222222222 24567889999863222221223333333222223356688999843
|
|
| >PHA03333 putative ATPase subunit of terminase; Provisional | Back alignment and domain information |
|---|
Probab=88.09 E-value=5.2 Score=51.08 Aligned_cols=60 Identities=17% Similarity=0.252 Sum_probs=44.5
Q ss_pred HHHHHhcCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhhc
Q 000384 53 VFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT 117 (1590)
Q Consensus 53 ~le~~~~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~ 117 (1590)
+++..+++-.++..|=|.|||.+..+++..++.. .+.+|++.+|...-+.+..+.++..+
T Consensus 181 ~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f-----~Gi~IlvTAH~~~ts~evF~rv~~~l 240 (752)
T PHA03333 181 IFDEYGKCYTAATVPRRCGKTTIMAIILAAMISF-----LEIDIVVQAQRKTMCLTLYNRVETVV 240 (752)
T ss_pred HHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHh-----cCCeEEEECCChhhHHHHHHHHHHHH
Confidence 4444456778999999999999888776665531 23569999999888888777766654
|
|
| >TIGR01425 SRP54_euk signal recognition particle protein SRP54 | Back alignment and domain information |
|---|
Probab=88.05 E-value=3.3 Score=50.78 Aligned_cols=56 Identities=18% Similarity=-0.002 Sum_probs=34.3
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecC-hhhHHHHHHHHHhhcCCceE
Q 000384 62 TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPT-VHLVHQQYDVIRVHTDFEVE 122 (1590)
Q Consensus 62 ~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt-~~Lv~Qq~~~i~~~~~~~v~ 122 (1590)
+.+++++|+|||..+.-++..+.. .+.+.+++-+.+ ++-+.+|.+......++++.
T Consensus 103 i~lvG~~GvGKTTtaaKLA~~l~~-----~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~ 159 (429)
T TIGR01425 103 IMFVGLQGSGKTTTCTKLAYYYQR-----KGFKPCLVCADTFRAGAFDQLKQNATKARIPFY 159 (429)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-----CCCCEEEEcCcccchhHHHHHHHHhhccCCeEE
Confidence 469999999999988887765433 223333333332 44455565655555565554
|
This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model. |
| >PRK07003 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=88.03 E-value=1.6 Score=56.42 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=20.5
Q ss_pred EEEEeCCCChHHHHHHHHHHHHH
Q 000384 62 TIAVLETGAGKTMIAVMLIKDIA 84 (1590)
Q Consensus 62 ~Ii~~~TGsGKTliailli~~~l 84 (1590)
.|++++.|+|||.++..+.+.+.
T Consensus 41 yLFtGPpGvGKTTlAriLAKaLn 63 (830)
T PRK07003 41 YLFTGTRGVGKTTLSRIFAKALN 63 (830)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 58999999999999998888774
|
|
| >TIGR01074 rep ATP-dependent DNA helicase Rep | Back alignment and domain information |
|---|
Probab=88.01 E-value=2 Score=57.12 Aligned_cols=88 Identities=14% Similarity=0.017 Sum_probs=66.1
Q ss_pred CcHHHHHHHHHHhcCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhhcCCceEEEe
Q 000384 46 PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYY 125 (1590)
Q Consensus 46 pR~yQ~e~le~~~~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~~~~v~~~~ 125 (1590)
+.+-|.+++.. ...+++|.+..|||||.+.+..|.+++.. ...+...+++|+.|+.-+.+..+.+.+.++..
T Consensus 2 Ln~~Q~~av~~-~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~--~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~~~----- 73 (664)
T TIGR01074 2 LNPQQQEAVEY-VTGPCLVLAGAGSGKTRVITNKIAYLIQN--CGYKARNIAAVTFTNKAAREMKERVAKTLGKG----- 73 (664)
T ss_pred CCHHHHHHHhC-CCCCEEEEecCCCCHHHHHHHHHHHHHHh--cCCCHHHeEEEeccHHHHHHHHHHHHHHhCcc-----
Confidence 67889998864 46799999999999999999988888751 12234568999999888888888887665410
Q ss_pred cCCCCCccchHHHHHhcCCCcEEEEcHHHHHHH
Q 000384 126 GAKGVDEWDSQCWQKEINKNDVLVMTPQILLDA 158 (1590)
Q Consensus 126 G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~ 158 (1590)
...+|.|.|...|...
T Consensus 74 -----------------~~~~v~v~TfHs~a~~ 89 (664)
T TIGR01074 74 -----------------EARGLTISTFHTLGLD 89 (664)
T ss_pred -----------------ccCCeEEEeHHHHHHH
Confidence 0236889999888443
|
Designed to identify rep members of the uvrD/rep subfamily. |
| >PRK04195 replication factor C large subunit; Provisional | Back alignment and domain information |
|---|
Probab=87.63 E-value=2.6 Score=53.53 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=20.3
Q ss_pred CCEEEEeCCCChHHHHHHHHHHHH
Q 000384 60 RNTIAVLETGAGKTMIAVMLIKDI 83 (1590)
Q Consensus 60 ~n~Ii~~~TGsGKTliailli~~~ 83 (1590)
+.+++++|+|+|||..+-.++.++
T Consensus 40 ~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 40 KALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 568999999999999888776654
|
|
| >COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.56 E-value=0.46 Score=54.02 Aligned_cols=25 Identities=36% Similarity=0.525 Sum_probs=21.3
Q ss_pred cCCEEEEeCCCChHHHHHHHHHHHH
Q 000384 59 RRNTIAVLETGAGKTMIAVMLIKDI 83 (1590)
Q Consensus 59 ~~n~Ii~~~TGsGKTliailli~~~ 83 (1590)
+.|+++.+|||||||+.|.-+.+.+
T Consensus 97 KSNILLiGPTGsGKTlLAqTLAk~L 121 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQTLAKIL 121 (408)
T ss_pred eccEEEECCCCCcHHHHHHHHHHHh
Confidence 4789999999999999988776654
|
|
| >PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51 | Back alignment and domain information |
|---|
Probab=87.38 E-value=1 Score=51.87 Aligned_cols=99 Identities=21% Similarity=0.313 Sum_probs=52.7
Q ss_pred EEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhhcCCceEEEecCCCCCccchHHHHHhcC
Q 000384 64 AVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEIN 143 (1590)
Q Consensus 64 i~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~~~~v~~~~G~~~~d~~~~~~w~~~~~ 143 (1590)
|+++.|+|||..++.+...........+...+++|+--....-.+-...+.+..++ +. +..++
T Consensus 43 i~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~~-----------~~------~~~l~ 105 (256)
T PF08423_consen 43 IVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERFGL-----------DP------EEILD 105 (256)
T ss_dssp EEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTTS------------H------HHHHH
T ss_pred EEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhcccc-----------cc------chhhh
Confidence 99999999999988765543221112344567888876655433333333322221 10 12222
Q ss_pred CCcEE-EEcHHHHHHHHHhc--CcCccceeEEEEecccc
Q 000384 144 KNDVL-VMTPQILLDALRKA--FLSLDIVCFIVIDECHH 179 (1590)
Q Consensus 144 ~~~Vl-V~T~q~L~~~l~~~--~~~l~~i~lII~DEaH~ 179 (1590)
+..|. +.+...+...+.+- .+.-.+++|||+|-.=.
T Consensus 106 ~I~v~~~~~~~~l~~~L~~l~~~l~~~~ikLIVIDSIaa 144 (256)
T PF08423_consen 106 NIFVIRVFDLEELLELLEQLPKLLSESKIKLIVIDSIAA 144 (256)
T ss_dssp TEEEEE-SSHHHHHHHHHHHHHHHHHSCEEEEEEETSSH
T ss_pred ceeeeecCCHHHHHHHHHHHHhhccccceEEEEecchHH
Confidence 22222 33556666655432 22235799999998643
|
It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D .... |
| >PRK12323 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=87.31 E-value=2 Score=54.85 Aligned_cols=23 Identities=26% Similarity=0.379 Sum_probs=20.7
Q ss_pred EEEEeCCCChHHHHHHHHHHHHH
Q 000384 62 TIAVLETGAGKTMIAVMLIKDIA 84 (1590)
Q Consensus 62 ~Ii~~~TGsGKTliailli~~~l 84 (1590)
.|++++.|+|||.++..+.+.+.
T Consensus 41 ~LFtGP~GvGKTTLAriLAkaLn 63 (700)
T PRK12323 41 YLFTGTRGVGKTTLSRILAKSLN 63 (700)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 58999999999999999888775
|
|
| >PRK14958 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=87.29 E-value=1.6 Score=55.21 Aligned_cols=23 Identities=30% Similarity=0.343 Sum_probs=20.6
Q ss_pred EEEEeCCCChHHHHHHHHHHHHH
Q 000384 62 TIAVLETGAGKTMIAVMLIKDIA 84 (1590)
Q Consensus 62 ~Ii~~~TGsGKTliailli~~~l 84 (1590)
.|+++|.|+|||.+|..+.+.+.
T Consensus 41 ~Lf~Gp~G~GKTt~A~~lAk~l~ 63 (509)
T PRK14958 41 YLFTGTRGVGKTTISRILAKCLN 63 (509)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 58999999999999998888764
|
|
| >PRK14963 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=87.29 E-value=2.7 Score=53.20 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=20.2
Q ss_pred EEEEeCCCChHHHHHHHHHHHHH
Q 000384 62 TIAVLETGAGKTMIAVMLIKDIA 84 (1590)
Q Consensus 62 ~Ii~~~TGsGKTliailli~~~l 84 (1590)
.|+++|.|+|||.+|..+++.+.
T Consensus 39 ~Lf~GppGtGKTTlA~~lA~~l~ 61 (504)
T PRK14963 39 YLFSGPRGVGKTTTARLIAMAVN 61 (504)
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 49999999999999988877764
|
|
| >PRK10867 signal recognition particle protein; Provisional | Back alignment and domain information |
|---|
Probab=87.24 E-value=3.9 Score=50.47 Aligned_cols=57 Identities=25% Similarity=0.176 Sum_probs=34.1
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEec-ChhhHHHHHHHHHhhcCCceE
Q 000384 62 TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAP-TVHLVHQQYDVIRVHTDFEVE 122 (1590)
Q Consensus 62 ~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvP-t~~Lv~Qq~~~i~~~~~~~v~ 122 (1590)
+++++++|+|||.++.-++..+.. ..+.+..++-+. .++-+..|.+.+....++.+.
T Consensus 103 I~~vG~~GsGKTTtaakLA~~l~~----~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~ 160 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGKLAKYLKK----KKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVF 160 (433)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHH----hcCCcEEEEEccccchHHHHHHHHHHhhcCCeEE
Confidence 579999999999999988877654 213333444443 333333333444445565543
|
|
| >TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI | Back alignment and domain information |
|---|
Probab=87.23 E-value=3.6 Score=60.40 Aligned_cols=114 Identities=19% Similarity=0.117 Sum_probs=68.6
Q ss_pred CCCCcHHHHHHHHHHhc---CCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhhcCC
Q 000384 43 NFIPRIYQLKVFEVAKR---RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDF 119 (1590)
Q Consensus 43 ~~~pR~yQ~e~le~~~~---~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~~~ 119 (1590)
.+.+.+-|.+++..++. +=.||.++.|+|||.+.-.++ .+++ ..+..|+.++||---+ .++...++.
T Consensus 427 ~~~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l~~l~-~~~~-----~~G~~V~~lAPTgrAA----~~L~e~~g~ 496 (1960)
T TIGR02760 427 EFALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIAQLLL-HLAS-----EQGYEIQIITAGSLSA----QELRQKIPR 496 (1960)
T ss_pred cCCCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHHHHHH-HHHH-----hcCCeEEEEeCCHHHH----HHHHHHhcc
Confidence 46889999999998874 457899999999998655443 3333 2345699999996543 344443333
Q ss_pred ceEEEecCCCCCccchHHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccC
Q 000384 120 EVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATG 182 (1590)
Q Consensus 120 ~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~ 182 (1590)
... ....|...+... .-..|.+.|++ ....+..-++||+|||-.+..
T Consensus 497 ~A~-----------Ti~~~l~~l~~~-~~~~tv~~fl~----~~~~l~~~~vlIVDEAsMl~~ 543 (1960)
T TIGR02760 497 LAS-----------TFITWVKNLFND-DQDHTVQGLLD----KSSPFSNKDIFVVDEANKLSN 543 (1960)
T ss_pred hhh-----------hHHHHHHhhccc-ccchhHHHhhc----ccCCCCCCCEEEEECCCCCCH
Confidence 221 112233322121 12334444431 223345668999999997743
|
This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein. |
| >PRK11773 uvrD DNA-dependent helicase II; Provisional | Back alignment and domain information |
|---|
Probab=87.01 E-value=1.2 Score=59.32 Aligned_cols=71 Identities=18% Similarity=0.069 Sum_probs=56.9
Q ss_pred CCcHHHHHHHHHHhcCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhhcC
Q 000384 45 IPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTD 118 (1590)
Q Consensus 45 ~pR~yQ~e~le~~~~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~~ 118 (1590)
.+.+-|.+++.. ...+++|.+..|||||.+.+..|.+++.. ..-+...+++|+-|+..+....+.+.+.++
T Consensus 9 ~Ln~~Q~~av~~-~~g~~lV~AgaGSGKT~vl~~Ria~Li~~--~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~ 79 (721)
T PRK11773 9 SLNDKQREAVAA-PLGNMLVLAGAGSGKTRVLVHRIAWLMQV--ENASPYSIMAVTFTNKAAAEMRHRIEQLLG 79 (721)
T ss_pred hcCHHHHHHHhC-CCCCEEEEecCCCCHHHHHHHHHHHHHHc--CCCChhHeEeeeccHHHHHHHHHHHHHHhc
Confidence 478999999874 35789999999999999999888887751 122345699999999999988888887654
|
|
| >PRK14959 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=86.97 E-value=1.7 Score=55.62 Aligned_cols=26 Identities=27% Similarity=0.273 Sum_probs=21.9
Q ss_pred CCEEEEeCCCChHHHHHHHHHHHHHH
Q 000384 60 RNTIAVLETGAGKTMIAVMLIKDIAQ 85 (1590)
Q Consensus 60 ~n~Ii~~~TGsGKTliailli~~~l~ 85 (1590)
...|+.+|.|+|||.+|..+.+.+..
T Consensus 39 ha~Lf~GPpG~GKTtiArilAk~L~C 64 (624)
T PRK14959 39 PAYLFSGTRGVGKTTIARIFAKALNC 64 (624)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhccc
Confidence 34689999999999999998887753
|
|
| >PRK08691 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=86.92 E-value=3 Score=53.75 Aligned_cols=25 Identities=32% Similarity=0.401 Sum_probs=21.6
Q ss_pred CCEEEEeCCCChHHHHHHHHHHHHH
Q 000384 60 RNTIAVLETGAGKTMIAVMLIKDIA 84 (1590)
Q Consensus 60 ~n~Ii~~~TGsGKTliailli~~~l 84 (1590)
+.+|++++.|+|||.+|..+.+.+.
T Consensus 39 Ha~Lf~GP~GvGKTTlAriLAk~Ln 63 (709)
T PRK08691 39 HAYLLTGTRGVGKTTIARILAKSLN 63 (709)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhc
Confidence 3479999999999999998888764
|
|
| >PHA03368 DNA packaging terminase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=86.90 E-value=2.5 Score=53.53 Aligned_cols=127 Identities=15% Similarity=0.150 Sum_probs=80.5
Q ss_pred CCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhhcC-----CceEEEecCCCCCccc
Q 000384 60 RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTD-----FEVEEYYGAKGVDEWD 134 (1590)
Q Consensus 60 ~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~~-----~~v~~~~G~~~~d~~~ 134 (1590)
+-+++..|=-.|||.+.+..|...+. ..++.++++.+|...-++..+++++..+. ..+..+.|+ .+ .
T Consensus 255 k~tVflVPRR~GKTwivv~iI~~ll~----s~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkGe-~I-~-- 326 (738)
T PHA03368 255 RATVFLVPRRHGKTWFLVPLIALALA----TFRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKGE-TI-S-- 326 (738)
T ss_pred cceEEEecccCCchhhHHHHHHHHHH----hCCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecCc-EE-E--
Confidence 45789999999999977755544443 23566799999999999998888887432 122233331 11 0
Q ss_pred hHHHHHhcC-C--CcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCCCcHHHHHHHHHhcCCCCCcEEEEecc
Q 000384 135 SQCWQKEIN-K--NDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTAS 209 (1590)
Q Consensus 135 ~~~w~~~~~-~--~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~~~~~~im~~~~~~~~~~priLgLTAT 209 (1590)
-.+. + ..|.+.|. -..+.++=..++++|+|||+-+..+ .+..++ -+... ..|+++.+|-|
T Consensus 327 -----i~f~nG~kstI~FaSa------rntNsiRGqtfDLLIVDEAqFIk~~-al~~il-p~l~~--~n~k~I~ISS~ 389 (738)
T PHA03368 327 -----FSFPDGSRSTIVFASS------HNTNGIRGQDFNLLFVDEANFIRPD-AVQTIM-GFLNQ--TNCKIIFVSST 389 (738)
T ss_pred -----EEecCCCccEEEEEec------cCCCCccCCcccEEEEechhhCCHH-HHHHHH-HHHhc--cCccEEEEecC
Confidence 0111 1 24555532 1233445568999999999999764 566665 33332 37888888865
|
|
| >TIGR01075 uvrD DNA helicase II | Back alignment and domain information |
|---|
Probab=86.84 E-value=1.1 Score=59.85 Aligned_cols=71 Identities=15% Similarity=0.043 Sum_probs=56.8
Q ss_pred CCcHHHHHHHHHHhcCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhhcC
Q 000384 45 IPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTD 118 (1590)
Q Consensus 45 ~pR~yQ~e~le~~~~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~~ 118 (1590)
.+.+-|.+++.. ...+++|.+..|||||.+.+..|.+++.. ..-+...+++|+-|+..+....+.+.+.++
T Consensus 4 ~Ln~~Q~~av~~-~~g~~lV~AgaGSGKT~~L~~Ria~Li~~--~~v~p~~IL~lTFTnkAA~em~~Rl~~~~~ 74 (715)
T TIGR01075 4 GLNDKQREAVAA-PPGNLLVLAGAGSGKTRVLTHRIAWLLSV--ENASPHSIMAVTFTNKAAAEMRHRIGALLG 74 (715)
T ss_pred ccCHHHHHHHcC-CCCCEEEEecCCCCHHHHHHHHHHHHHHc--CCCCHHHeEeeeccHHHHHHHHHHHHHHhc
Confidence 478899999864 35789999999999999999988888751 122345699999999999888888887654
|
Designed to identify uvrD members of the uvrD/rep subfamily. |
| >PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase) | Back alignment and domain information |
|---|
Probab=86.72 E-value=2.1 Score=54.23 Aligned_cols=68 Identities=13% Similarity=0.033 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhc----------CCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhhc
Q 000384 48 IYQLKVFEVAKR----------RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT 117 (1590)
Q Consensus 48 ~yQ~e~le~~~~----------~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~ 117 (1590)
|||.-++..+.+ +.+++..+=|-|||..+..+....+- -....+..+++.+++..-+...++.++...
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~--~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i 78 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLF--LDGEPGAEIYCAANTRDQAKIVFDEAKKMI 78 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHh--cCCccCceEEEEeCCHHHHHHHHHHHHHHH
Confidence 688888777653 44789999999999977765544332 012334568999999998888888887765
|
The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. |
| >PRK08769 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=86.62 E-value=2.7 Score=49.72 Aligned_cols=41 Identities=15% Similarity=0.240 Sum_probs=33.7
Q ss_pred CCcHHHHHHHHHHhc--------CCEEEEeCCCChHHHHHHHHHHHHHH
Q 000384 45 IPRIYQLKVFEVAKR--------RNTIAVLETGAGKTMIAVMLIKDIAQ 85 (1590)
Q Consensus 45 ~pR~yQ~e~le~~~~--------~n~Ii~~~TGsGKTliailli~~~l~ 85 (1590)
.++|||..+++.+.. .-.++.+|.|+||+..|..+++.++-
T Consensus 4 ~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC 52 (319)
T PRK08769 4 AFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLA 52 (319)
T ss_pred cccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhC
Confidence 468899998887752 23789999999999999998888764
|
|
| >PRK06921 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=86.59 E-value=3.6 Score=47.57 Aligned_cols=44 Identities=11% Similarity=0.179 Sum_probs=31.1
Q ss_pred CCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHH
Q 000384 60 RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQ 109 (1590)
Q Consensus 60 ~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq 109 (1590)
.++++.+++|+|||+.+..++.++.. . .+..|+|+. ...+..+.
T Consensus 118 ~~l~l~G~~G~GKThLa~aia~~l~~----~-~g~~v~y~~-~~~l~~~l 161 (266)
T PRK06921 118 NSIALLGQPGSGKTHLLTAAANELMR----K-KGVPVLYFP-FVEGFGDL 161 (266)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhh----h-cCceEEEEE-HHHHHHHH
Confidence 67999999999999999888887765 1 134466654 44555543
|
|
| >TIGR00064 ftsY signal recognition particle-docking protein FtsY | Back alignment and domain information |
|---|
Probab=86.42 E-value=9 Score=44.49 Aligned_cols=24 Identities=25% Similarity=0.301 Sum_probs=19.6
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHH
Q 000384 62 TIAVLETGAGKTMIAVMLIKDIAQ 85 (1590)
Q Consensus 62 ~Ii~~~TGsGKTliailli~~~l~ 85 (1590)
+++++++|+|||.++..++..+..
T Consensus 75 i~l~G~~G~GKTTt~akLA~~l~~ 98 (272)
T TIGR00064 75 ILFVGVNGVGKTTTIAKLANKLKK 98 (272)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHh
Confidence 568899999999998888766543
|
There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. |
| >TIGR02688 conserved hypothetical protein TIGR02688 | Back alignment and domain information |
|---|
Probab=86.28 E-value=1.9 Score=52.05 Aligned_cols=24 Identities=29% Similarity=0.231 Sum_probs=20.3
Q ss_pred cCCEEEEeCCCChHHHHHHHHHHH
Q 000384 59 RRNTIAVLETGAGKTMIAVMLIKD 82 (1590)
Q Consensus 59 ~~n~Ii~~~TGsGKTliailli~~ 82 (1590)
+.|+|..+|+|+|||.+|..+-..
T Consensus 209 ~~Nli~lGp~GTGKThla~~l~~~ 232 (449)
T TIGR02688 209 NYNLIELGPKGTGKSYIYNNLSPY 232 (449)
T ss_pred CCcEEEECCCCCCHHHHHHHHhHH
Confidence 589999999999999988875444
|
Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687. |
| >PRK14961 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=86.20 E-value=3 Score=50.82 Aligned_cols=23 Identities=35% Similarity=0.398 Sum_probs=20.1
Q ss_pred EEEEeCCCChHHHHHHHHHHHHH
Q 000384 62 TIAVLETGAGKTMIAVMLIKDIA 84 (1590)
Q Consensus 62 ~Ii~~~TGsGKTliailli~~~l 84 (1590)
.++.+|.|+|||..|-.+++.+.
T Consensus 41 ~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 41 WLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred EEEecCCCCCHHHHHHHHHHHhc
Confidence 58999999999999988877764
|
|
| >PTZ00293 thymidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=86.06 E-value=2.5 Score=46.48 Aligned_cols=35 Identities=17% Similarity=0.167 Sum_probs=25.3
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecC
Q 000384 62 TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPT 102 (1590)
Q Consensus 62 ~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt 102 (1590)
.++++|++||||.-.+..+..... .+++++++-|.
T Consensus 7 ~vi~GpMfSGKTteLLr~i~~y~~------ag~kv~~~kp~ 41 (211)
T PTZ00293 7 SVIIGPMFSGKTTELMRLVKRFTY------SEKKCVVIKYS 41 (211)
T ss_pred EEEECCCCChHHHHHHHHHHHHHH------cCCceEEEEec
Confidence 478999999999766666555433 34557888886
|
|
| >KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=85.89 E-value=2.2 Score=52.55 Aligned_cols=121 Identities=14% Similarity=0.256 Sum_probs=84.4
Q ss_pred CCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhhcCCceEEEecCCCCCccchHHHHH-hcCCC
Q 000384 67 ETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQK-EINKN 145 (1590)
Q Consensus 67 ~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~~~~v~~~~G~~~~d~~~~~~w~~-~~~~~ 145 (1590)
-.+.||+-..++.++++.. .+-.+.+++.|-+.+-+.|.+.++..+-++++..++|...... ..+.... ....-
T Consensus 365 lvF~gse~~K~lA~rq~v~----~g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~q-rde~~~~FR~g~I 439 (593)
T KOG0344|consen 365 LVFCGSEKGKLLALRQLVA----SGFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQ-RDETMERFRIGKI 439 (593)
T ss_pred heeeecchhHHHHHHHHHh----ccCCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhH-HHHHHHHHhccCe
Confidence 3588999999999999876 3344457777888899999999998777899999999865332 1111121 12456
Q ss_pred cEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCCCcHHHHHHHHHhcCCCCCcEEEEeccCCccC
Q 000384 146 DVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRK 214 (1590)
Q Consensus 146 ~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~~~~~~im~~~~~~~~~~priLgLTATP~~~~ 214 (1590)
.|+|||. .+.+| +.+.++++||-+..-...- .| .+|| |+||++.+..
T Consensus 440 wvLicTd-----ll~RG-iDf~gvn~VInyD~p~s~~--sy-------------ihrI-GRtgRag~~g 486 (593)
T KOG0344|consen 440 WVLICTD-----LLARG-IDFKGVNLVINYDFPQSDL--SY-------------IHRI-GRTGRAGRSG 486 (593)
T ss_pred eEEEehh-----hhhcc-ccccCcceEEecCCCchhH--HH-------------HHHh-hccCCCCCCc
Confidence 8999984 45566 7899999999876543311 11 1244 9999988654
|
|
| >PF13173 AAA_14: AAA domain | Back alignment and domain information |
|---|
Probab=85.81 E-value=4.3 Score=41.21 Aligned_cols=24 Identities=33% Similarity=0.393 Sum_probs=19.6
Q ss_pred CCEEEEeCCCChHHHHHHHHHHHH
Q 000384 60 RNTIAVLETGAGKTMIAVMLIKDI 83 (1590)
Q Consensus 60 ~n~Ii~~~TGsGKTliailli~~~ 83 (1590)
+-++|.+|.|+|||..+..++..+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~ 26 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDL 26 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999877766655
|
|
| >PRK06964 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=85.80 E-value=2.5 Score=50.52 Aligned_cols=40 Identities=15% Similarity=0.094 Sum_probs=32.3
Q ss_pred CcHHHHHHHHHHhc------CCEEEEeCCCChHHHHHHHHHHHHHH
Q 000384 46 PRIYQLKVFEVAKR------RNTIAVLETGAGKTMIAVMLIKDIAQ 85 (1590)
Q Consensus 46 pR~yQ~e~le~~~~------~n~Ii~~~TGsGKTliailli~~~l~ 85 (1590)
.+|||...++.+.. ...++.+|.|.|||..|..+.+.++.
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC 47 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLAQGLLC 47 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 36888888887753 45689999999999999888877764
|
|
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
Probab=85.77 E-value=2.5 Score=56.03 Aligned_cols=95 Identities=24% Similarity=0.271 Sum_probs=72.7
Q ss_pred CHHHHHHH-HHHHhcCCCCCcEEEEEEehHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCC
Q 000384 396 STKLHELL-QLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGK 474 (1590)
Q Consensus 396 s~K~~~L~-~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~ 474 (1590)
|.|..... -++... ..+.+++|.++++.-|...++.+++....-++++..++|+ ++.++|.++++...+|+
T Consensus 293 SGKT~va~~~il~~~--~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~------~~~~~r~~~~~~l~~g~ 364 (681)
T PRK10917 293 SGKTVVAALAALAAI--EAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGS------LKGKERREILEAIASGE 364 (681)
T ss_pred CcHHHHHHHHHHHHH--HcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCC------CCHHHHHHHHHHHhCCC
Confidence 66765433 333333 2356899999999999888887776532235889999998 78999999999999999
Q ss_pred ceEEEEccc-ccccccCCCccEEEE
Q 000384 475 VNLLFATDV-IEEGMHVPNCSYVIR 498 (1590)
Q Consensus 475 ~~vLVaT~v-leeGIDip~~~~VI~ 498 (1590)
++|+|+|.. +...+.+..+.+||.
T Consensus 365 ~~IvVgT~~ll~~~v~~~~l~lvVI 389 (681)
T PRK10917 365 ADIVIGTHALIQDDVEFHNLGLVII 389 (681)
T ss_pred CCEEEchHHHhcccchhcccceEEE
Confidence 999999964 556677888888774
|
|
| >TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type | Back alignment and domain information |
|---|
Probab=85.60 E-value=2.3 Score=60.13 Aligned_cols=138 Identities=12% Similarity=0.074 Sum_probs=86.7
Q ss_pred CcHHHHHHHHHHhcCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhhcCCceEEEe
Q 000384 46 PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYY 125 (1590)
Q Consensus 46 pR~yQ~e~le~~~~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~~~~v~~~~ 125 (1590)
.++-|.+++. ..++|++|.+.-|||||.+.+-.+..++. .......+++|+=|+.-+....+.|+..+.-....
T Consensus 2 ~t~~Q~~ai~-~~~~~~lv~A~AGsGKT~~lv~r~~~~~~---~~~~~~~il~~tFt~~aa~e~~~ri~~~l~~~~~~-- 75 (1232)
T TIGR02785 2 WTDEQWQAIY-TRGQNILVSASAGSGKTAVLVERIIKKIL---RGVDIDRLLVVTFTNAAAREMKERIEEALQKALQQ-- 75 (1232)
T ss_pred CCHHHHHHHh-CCCCCEEEEecCCCcHHHHHHHHHHHHHh---cCCCHhhEEEEeccHHHHHHHHHHHHHHHHHHHhc--
Confidence 4678999997 46889999999999999998887766554 12233458999999999988888888765321110
Q ss_pred cCCCCCccchHHHHHhc-CCCcEEEEcHHHHHHHHHhcCcCccce--eEEEEeccccc-cCCCcHHHHHHHHHh
Q 000384 126 GAKGVDEWDSQCWQKEI-NKNDVLVMTPQILLDALRKAFLSLDIV--CFIVIDECHHA-TGNHPYTKIMKEFYH 195 (1590)
Q Consensus 126 G~~~~d~~~~~~w~~~~-~~~~VlV~T~q~L~~~l~~~~~~l~~i--~lII~DEaH~~-~~~~~~~~im~~~~~ 195 (1590)
.. ....|...+ .-...-|+|...|...+-+.+...-++ ++=|.||.... .....+..++.++|.
T Consensus 76 ---~p---~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~~ll~~e~~~~~~e~~y~ 143 (1232)
T TIGR02785 76 ---EP---NSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQLLLIKEVVDDVFEEEYY 143 (1232)
T ss_pred ---Cc---hhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHHHHHHHHHHHHHHHHHHh
Confidence 11 112233333 234567899988865443333322222 34568887652 233355566666554
|
AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species. |
| >cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes | Back alignment and domain information |
|---|
Probab=85.53 E-value=6.5 Score=42.19 Aligned_cols=24 Identities=29% Similarity=0.256 Sum_probs=20.4
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHH
Q 000384 62 TIAVLETGAGKTMIAVMLIKDIAQ 85 (1590)
Q Consensus 62 ~Ii~~~TGsGKTliailli~~~l~ 85 (1590)
+++.+++|+|||..+..++..+..
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~ 26 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKK 26 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 578999999999999888777654
|
SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain. |
| >PRK00440 rfc replication factor C small subunit; Reviewed | Back alignment and domain information |
|---|
Probab=85.31 E-value=7 Score=46.62 Aligned_cols=37 Identities=16% Similarity=0.218 Sum_probs=26.3
Q ss_pred cHHHHHHHHHHhc----CCEEEEeCCCChHHHHHHHHHHHH
Q 000384 47 RIYQLKVFEVAKR----RNTIAVLETGAGKTMIAVMLIKDI 83 (1590)
Q Consensus 47 R~yQ~e~le~~~~----~n~Ii~~~TGsGKTliailli~~~ 83 (1590)
++.+.+.+..+.+ .+++++++.|+|||.++-.+..++
T Consensus 22 ~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l 62 (319)
T PRK00440 22 QEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALAREL 62 (319)
T ss_pred cHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4444555544432 358999999999999888776665
|
|
| >PRK14962 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=85.29 E-value=2.9 Score=52.43 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=20.1
Q ss_pred EEEEeCCCChHHHHHHHHHHHHH
Q 000384 62 TIAVLETGAGKTMIAVMLIKDIA 84 (1590)
Q Consensus 62 ~Ii~~~TGsGKTliailli~~~l 84 (1590)
.|+++|.|+|||.+|-.++..+.
T Consensus 39 ~Lf~GPpGtGKTTlA~~lA~~l~ 61 (472)
T PRK14962 39 YIFAGPRGTGKTTVARILAKSLN 61 (472)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 69999999999999988877653
|
|
| >KOG0442 consensus Structure-specific endonuclease ERCC1-XPF, catalytic component XPF/ERCC4 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=84.92 E-value=86 Score=41.05 Aligned_cols=150 Identities=13% Similarity=0.135 Sum_probs=94.5
Q ss_pred CcHHHHHHHHHHh-cCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhhcCC-ceEE
Q 000384 46 PRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDF-EVEE 123 (1590)
Q Consensus 46 pR~yQ~e~le~~~-~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~~~-~v~~ 123 (1590)
+-+||.+++...+ ...+++++..|.|=--+.+-.+... ..++-.++ ++++.+.-.+++. ..+.- .+..
T Consensus 14 lL~Ye~qv~~~ll~~d~~L~V~a~GLsl~~l~~~~l~~~------s~~~sL~L-vLN~~~~ee~~f~---s~lk~~~~t~ 83 (892)
T KOG0442|consen 14 LLEYEQQVLLELLEADGNLLVLAPGLSLLRLVAELLILF------SPPGSLVL-VLNTQEAEEEYFS---SKLKEPLVTE 83 (892)
T ss_pred cchhHHHHHHhhhcccCceEEecCCcCHHHHHHHHHHHh------CCccceEE-EecCchhhHHHHH---HhcCcCCCcc
Confidence 7899999999998 4555888999988655544433322 22333333 4455555554332 22211 1111
Q ss_pred EecCCCCCccchHHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCCCcHHHHHHHHHhcCCCCCcE
Q 000384 124 YYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKV 203 (1590)
Q Consensus 124 ~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~~~~~~im~~~~~~~~~~pri 203 (1590)
......++ ..+.......|.++|.-+|.-.+-.+.+..+.+.-|+++-||.+.....-+-|++.| ...++.-.|
T Consensus 84 ~~s~ls~~-----~R~~~Yl~GGv~fiSsRiLvvDlLt~rIp~~ki~gI~vl~Ah~i~ets~eaFIlRl~-R~knk~gfI 157 (892)
T KOG0442|consen 84 DPSELSVN-----KRRSKYLEGGVFFISSRILVVDLLTGRIPTEKITGILVLNAHTISETSQEAFILRLY-RSKNKTGFI 157 (892)
T ss_pred Chhhcchh-----hhHHhhhcCCeEEeeeceeeeehhcCccchhHcceEEEechhhhhhcchhHHHHHHH-HHhcCCcce
Confidence 22222222 223344466899999999988888889999999999999999998776777777754 444444555
Q ss_pred EEEeccCC
Q 000384 204 FGMTASPV 211 (1590)
Q Consensus 204 LgLTATP~ 211 (1590)
=++|-.|.
T Consensus 158 kAFsd~P~ 165 (892)
T KOG0442|consen 158 KAFSDSPE 165 (892)
T ss_pred eccccCch
Confidence 56665554
|
|
| >PRK14952 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=84.88 E-value=2.6 Score=54.09 Aligned_cols=24 Identities=25% Similarity=0.253 Sum_probs=21.0
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHH
Q 000384 62 TIAVLETGAGKTMIAVMLIKDIAQ 85 (1590)
Q Consensus 62 ~Ii~~~TGsGKTliailli~~~l~ 85 (1590)
.|+++|.|+|||.+|..+++.+..
T Consensus 38 ~Lf~Gp~G~GKTt~A~~lAk~l~c 61 (584)
T PRK14952 38 YLFSGPRGCGKTSSARILARSLNC 61 (584)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcc
Confidence 589999999999999998887753
|
|
| >PRK09112 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=84.66 E-value=3.8 Score=49.42 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=21.9
Q ss_pred CEEEEeCCCChHHHHHHHHHHHHHH
Q 000384 61 NTIAVLETGAGKTMIAVMLIKDIAQ 85 (1590)
Q Consensus 61 n~Ii~~~TGsGKTliailli~~~l~ 85 (1590)
..++.+|.|+|||..|..+++.++.
T Consensus 47 a~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 47 ALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred eEeeECCCCCCHHHHHHHHHHHHcC
Confidence 4899999999999999988887754
|
|
| >PRK08506 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=84.55 E-value=2.4 Score=53.34 Aligned_cols=114 Identities=18% Similarity=0.176 Sum_probs=59.9
Q ss_pred CEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHH-hhcCCceEEE-ecCCCCCccchH-H
Q 000384 61 NTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIR-VHTDFEVEEY-YGAKGVDEWDSQ-C 137 (1590)
Q Consensus 61 n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~-~~~~~~v~~~-~G~~~~d~~~~~-~ 137 (1590)
=+||.+.+|.|||..++-++.+.+. .+..|+|+..- -=..|....+- ...++....+ .|....+.|..- .
T Consensus 194 LivIaarpg~GKT~fal~ia~~~~~------~g~~V~~fSlE-Ms~~ql~~Rlla~~s~v~~~~i~~~~l~~~e~~~~~~ 266 (472)
T PRK08506 194 LIIIAARPSMGKTTLCLNMALKALN------QDKGVAFFSLE-MPAEQLMLRMLSAKTSIPLQNLRTGDLDDDEWERLSD 266 (472)
T ss_pred eEEEEcCCCCChHHHHHHHHHHHHh------cCCcEEEEeCc-CCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHH
Confidence 3689999999999999988877643 23346666543 22445554443 3344433222 344443444321 1
Q ss_pred HHHhcCCCcEEEE-----cHHHHHHHHHhcCcCccceeEEEEecccccc
Q 000384 138 WQKEINKNDVLVM-----TPQILLDALRKAFLSLDIVCFIVIDECHHAT 181 (1590)
Q Consensus 138 w~~~~~~~~VlV~-----T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~ 181 (1590)
....+.+..+.|- |...+...+++-......+++||||=.+.+.
T Consensus 267 a~~~l~~~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~ 315 (472)
T PRK08506 267 ACDELSKKKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMS 315 (472)
T ss_pred HHHHHHcCCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhcc
Confidence 1122233444442 4444444333211112357899998877654
|
|
| >PHA00729 NTP-binding motif containing protein | Back alignment and domain information |
|---|
Probab=84.53 E-value=3.7 Score=45.78 Aligned_cols=55 Identities=16% Similarity=0.199 Sum_probs=34.6
Q ss_pred CCEEEEeCCCChHHHHHHHHHHHHHHHHH-------hCCCCeEEEEEecChhhHHHHHHHHHh
Q 000384 60 RNTIAVLETGAGKTMIAVMLIKDIAQAIK-------SNGFKKLIIFLAPTVHLVHQQYDVIRV 115 (1590)
Q Consensus 60 ~n~Ii~~~TGsGKTliailli~~~l~~~~-------~~~~~~~vl~LvPt~~Lv~Qq~~~i~~ 115 (1590)
.|++|.+++|+|||..|..+...+..... .......++| ++...|.....+.+..
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~~~~~~f-id~~~Ll~~L~~a~~~ 79 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQYVQNSYF-FELPDALEKIQDAIDN 79 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhcCCcEEE-EEHHHHHHHHHHHHhc
Confidence 68999999999999999998877642110 1122333444 4545666666554443
|
|
| >PRK06645 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=84.52 E-value=2.1 Score=53.91 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=21.8
Q ss_pred CCEEEEeCCCChHHHHHHHHHHHHH
Q 000384 60 RNTIAVLETGAGKTMIAVMLIKDIA 84 (1590)
Q Consensus 60 ~n~Ii~~~TGsGKTliailli~~~l 84 (1590)
+..|+++|.|+|||.+|-.+.+.+.
T Consensus 44 ~a~Lf~Gp~G~GKTT~ArilAk~Ln 68 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARIIAKAVN 68 (507)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhc
Confidence 4589999999999999999888764
|
|
| >PRK14957 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=84.47 E-value=3.1 Score=52.92 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=20.4
Q ss_pred EEEEeCCCChHHHHHHHHHHHHH
Q 000384 62 TIAVLETGAGKTMIAVMLIKDIA 84 (1590)
Q Consensus 62 ~Ii~~~TGsGKTliailli~~~l 84 (1590)
.|+++|.|+|||.+|..+++.+.
T Consensus 41 ~Lf~Gp~GvGKTTlAr~lAk~L~ 63 (546)
T PRK14957 41 YLFTGTRGVGKTTLGRLLAKCLN 63 (546)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 68999999999999998887764
|
|
| >PRK14712 conjugal transfer nickase/helicase TraI; Provisional | Back alignment and domain information |
|---|
Probab=84.34 E-value=6 Score=55.96 Aligned_cols=61 Identities=18% Similarity=0.089 Sum_probs=42.2
Q ss_pred CCCcHHHHHHHHHHhc---CCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhH
Q 000384 44 FIPRIYQLKVFEVAKR---RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106 (1590)
Q Consensus 44 ~~pR~yQ~e~le~~~~---~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv 106 (1590)
..+.+-|.+++..++. +-++|.+..|+|||.+.-.++..+.. .. ...+..++.++||-.-+
T Consensus 834 ~~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~-l~-e~~g~~V~glAPTgkAa 897 (1623)
T PRK14712 834 EKLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNM-LP-ESERPRVVGLGPTHRAV 897 (1623)
T ss_pred cccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHH-Hh-hccCceEEEEechHHHH
Confidence 4789999999999873 56899999999999875443322211 11 12345688899995443
|
|
| >TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 | Back alignment and domain information |
|---|
Probab=84.29 E-value=2.4 Score=54.59 Aligned_cols=88 Identities=9% Similarity=0.027 Sum_probs=60.4
Q ss_pred HHHHHHHHhcCCCCCcEEEEEEehHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCC----Cc
Q 000384 400 HELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGG----KV 475 (1590)
Q Consensus 400 ~~L~~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g----~~ 475 (1590)
..+.+++.. .+.+++|.+.+......+++.|... +. ....+.|.. ..+...+++|+.. +-
T Consensus 460 ~~~~~~~~~----~~G~~lvLfTS~~~~~~~~~~l~~~--l~--~~~l~qg~~--------~~~~~l~~~f~~~~~~~~~ 523 (636)
T TIGR03117 460 LSTAAILRK----AQGGTLVLTTAFSHISAIGQLVELG--IP--AEIVIQSEK--------NRLASAEQQFLALYANGIQ 523 (636)
T ss_pred HHHHHHHHH----cCCCEEEEechHHHHHHHHHHHHhh--cC--CCEEEeCCC--------ccHHHHHHHHHHhhcCCCC
Confidence 344444443 2346777777777778888777542 11 234555652 1346789999874 78
Q ss_pred eEEEEcccccccccC--------C--CccEEEEccCCC
Q 000384 476 NLLFATDVIEEGMHV--------P--NCSYVIRFDLPK 503 (1590)
Q Consensus 476 ~vLVaT~vleeGIDi--------p--~~~~VI~fD~p~ 503 (1590)
.||++|+.+-||||+ | .|.+||..-+|.
T Consensus 524 ~vL~gt~sfweGvDv~~~~~~p~~G~~Ls~ViI~kLPF 561 (636)
T TIGR03117 524 PVLIAAGGAWTGIDLTHKPVSPDKDNLLTDLIITCAPF 561 (636)
T ss_pred cEEEeCCccccccccCCccCCCCCCCcccEEEEEeCCC
Confidence 899999999999999 3 399999877663
|
Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome. |
| >COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=84.19 E-value=4.8 Score=43.27 Aligned_cols=90 Identities=13% Similarity=0.152 Sum_probs=50.7
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhhcCCceEEEecCCCCCccchHHHHHh
Q 000384 62 TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKE 141 (1590)
Q Consensus 62 ~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~~~~v~~~~G~~~~d~~~~~~w~~~ 141 (1590)
.++++|+.||||..-+..++.... .+.++++..|...= . +.+..+.+..+..
T Consensus 7 ~~i~gpM~SGKT~eLl~r~~~~~~------~g~~v~vfkp~iD~----------R--~~~~~V~Sr~G~~---------- 58 (201)
T COG1435 7 EFIYGPMFSGKTEELLRRARRYKE------AGMKVLVFKPAIDT----------R--YGVGKVSSRIGLS---------- 58 (201)
T ss_pred EEEEccCcCcchHHHHHHHHHHHH------cCCeEEEEeccccc----------c--cccceeeeccCCc----------
Confidence 478999999999855444444322 45567777775321 1 1222222222211
Q ss_pred cCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccC
Q 000384 142 INKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATG 182 (1590)
Q Consensus 142 ~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~ 182 (1590)
...++|-...-+.+.+....-.. .++.|.+|||+=...
T Consensus 59 --~~A~~i~~~~~i~~~i~~~~~~~-~~~~v~IDEaQF~~~ 96 (201)
T COG1435 59 --SEAVVIPSDTDIFDEIAALHEKP-PVDCVLIDEAQFFDE 96 (201)
T ss_pred --ccceecCChHHHHHHHHhcccCC-CcCEEEEehhHhCCH
Confidence 22355556666666655422111 278999999987644
|
|
| >PRK07994 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=83.98 E-value=2.4 Score=54.74 Aligned_cols=24 Identities=33% Similarity=0.350 Sum_probs=21.0
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHH
Q 000384 62 TIAVLETGAGKTMIAVMLIKDIAQ 85 (1590)
Q Consensus 62 ~Ii~~~TGsGKTliailli~~~l~ 85 (1590)
.|+.++.|+|||.+|..+.+.+..
T Consensus 41 yLf~Gp~GvGKTTlAr~lAk~L~c 64 (647)
T PRK07994 41 YLFSGTRGVGKTTIARLLAKGLNC 64 (647)
T ss_pred EEEECCCCCCHHHHHHHHHHhhhh
Confidence 489999999999999998887754
|
|
| >PRK08451 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=83.76 E-value=5.9 Score=50.15 Aligned_cols=24 Identities=21% Similarity=0.196 Sum_probs=20.8
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHH
Q 000384 62 TIAVLETGAGKTMIAVMLIKDIAQ 85 (1590)
Q Consensus 62 ~Ii~~~TGsGKTliailli~~~l~ 85 (1590)
.|+++|.|+|||..|..+++.+..
T Consensus 39 yLf~Gp~G~GKTt~Ar~LAk~L~c 62 (535)
T PRK08451 39 YLFSGLRGSGKTSSARIFARALVC 62 (535)
T ss_pred EEEECCCCCcHHHHHHHHHHHhcC
Confidence 489999999999999988887753
|
|
| >TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily | Back alignment and domain information |
|---|
Probab=83.71 E-value=3.6 Score=51.34 Aligned_cols=116 Identities=13% Similarity=0.127 Sum_probs=59.0
Q ss_pred CCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHH-HhhcCCceEEE-ecCCCCCccch-H
Q 000384 60 RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVI-RVHTDFEVEEY-YGAKGVDEWDS-Q 136 (1590)
Q Consensus 60 ~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i-~~~~~~~v~~~-~G~~~~d~~~~-~ 136 (1590)
.=++|.+.+|+|||..++.++..... ..+..|+|+..- --..|....+ ....++....+ .|......|.. .
T Consensus 195 ~liviag~pg~GKT~~al~ia~~~a~-----~~g~~v~~fSlE-m~~~~l~~Rl~~~~~~v~~~~~~~~~l~~~~~~~~~ 268 (421)
T TIGR03600 195 DLIVIGARPSMGKTTLALNIAENVAL-----REGKPVLFFSLE-MSAEQLGERLLASKSGINTGNIRTGRFNDSDFNRLL 268 (421)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHH-----hCCCcEEEEECC-CCHHHHHHHHHHHHcCCCHHHHhcCCCCHHHHHHHH
Confidence 34689999999999999988877653 123446776632 1233333333 33344443322 23333333321 1
Q ss_pred HHHHhcCCCcEEEE-----cHHHHHHHHHhcCcCccceeEEEEecccccc
Q 000384 137 CWQKEINKNDVLVM-----TPQILLDALRKAFLSLDIVCFIVIDECHHAT 181 (1590)
Q Consensus 137 ~w~~~~~~~~VlV~-----T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~ 181 (1590)
.+...+.+..+.|. |.+.+....++-......+++||+|=.|.+.
T Consensus 269 ~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDyLql~~ 318 (421)
T TIGR03600 269 NAVDRLSEKDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDYIQLMA 318 (421)
T ss_pred HHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEecccccC
Confidence 12222334445543 3444433333211112257899999777764
|
Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model. |
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=83.62 E-value=13 Score=44.26 Aligned_cols=120 Identities=18% Similarity=0.181 Sum_probs=60.1
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEE-ecC-hhhHHHHHHHHHhhcCCceEEEecCCCCCccchHHHH
Q 000384 62 TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFL-APT-VHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQ 139 (1590)
Q Consensus 62 ~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~L-vPt-~~Lv~Qq~~~i~~~~~~~v~~~~G~~~~d~~~~~~w~ 139 (1590)
+.+++|+|+|||..+..+...+.. .+++ |+++ +.+ +.-+.+|........++.+. ......+.
T Consensus 117 i~lvGpnGsGKTTt~~kLA~~l~~-----~g~~-V~Li~~D~~r~~a~eql~~~a~~~~i~~~--~~~~~~dp------- 181 (318)
T PRK10416 117 ILVVGVNGVGKTTTIGKLAHKYKA-----QGKK-VLLAAGDTFRAAAIEQLQVWGERVGVPVI--AQKEGADP------- 181 (318)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHh-----cCCe-EEEEecCccchhhHHHHHHHHHHcCceEE--EeCCCCCH-------
Confidence 568999999999988887766533 2333 4444 444 23232333333333343332 11111110
Q ss_pred HhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCCCcHHHHHHHHHhc------CCCCCcEEEEeccC
Q 000384 140 KEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHK------SDNKPKVFGMTASP 210 (1590)
Q Consensus 140 ~~~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~~~~~~im~~~~~~------~~~~priLgLTATP 210 (1590)
.....+.+... ...++++||+|=+-+...+......++.+... ..+...+|-|.||-
T Consensus 182 ------------a~~v~~~l~~~--~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~ 244 (318)
T PRK10416 182 ------------ASVAFDAIQAA--KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATT 244 (318)
T ss_pred ------------HHHHHHHHHHH--HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCC
Confidence 01111222111 12567999999887765443333334433321 12334679999984
|
|
| >KOG1807 consensus Helicases [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=83.62 E-value=2.6 Score=53.28 Aligned_cols=90 Identities=16% Similarity=0.038 Sum_probs=66.2
Q ss_pred CCCCCCCCcHHHHHHHHHHhc-CCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhhc
Q 000384 39 TNSINFIPRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT 117 (1590)
Q Consensus 39 ~~~~~~~pR~yQ~e~le~~~~-~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~ 117 (1590)
+.+....+-.-|..+++..+. +=.|+.+|.|+|||++.+.++..++...........++++|-|..-+.|.-..+..+-
T Consensus 372 p~~g~~ildsSq~~A~qs~ltyelsliqgppGTgkt~vtlkav~tLL~n~s~~~~~epIlvvC~Tnhavdq~ligiy~~q 451 (1025)
T KOG1807|consen 372 PGPGLVILDSSQQFAKQSKLTYELSLIQGPPGTGKTLVTLKAVDTLLLNSSGYTEPEPILVVCLTNHAVDQYLIGIYYHQ 451 (1025)
T ss_pred CCCCceeecHHHHHHHHHHhhhhhheeecCCCCCceeehHHHHHHHHhcccccccccceeeeehhhHHHHHHHHHHHhcC
Confidence 455666777899999998875 5679999999999999999999988733222233458999999999999888777543
Q ss_pred CCceEEEecCCC
Q 000384 118 DFEVEEYYGAKG 129 (1590)
Q Consensus 118 ~~~v~~~~G~~~ 129 (1590)
+ ...+..|+..
T Consensus 452 r-psImr~gsr~ 462 (1025)
T KOG1807|consen 452 R-PSIMRQGSRF 462 (1025)
T ss_pred C-ceEEEecccc
Confidence 3 3333445443
|
|
| >PRK06090 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=83.59 E-value=5.1 Score=47.44 Aligned_cols=42 Identities=10% Similarity=0.086 Sum_probs=34.0
Q ss_pred CCCcHHHHHHHHHHhc--------CCEEEEeCCCChHHHHHHHHHHHHHH
Q 000384 44 FIPRIYQLKVFEVAKR--------RNTIAVLETGAGKTMIAVMLIKDIAQ 85 (1590)
Q Consensus 44 ~~pR~yQ~e~le~~~~--------~n~Ii~~~TGsGKTliailli~~~l~ 85 (1590)
..+.|||...++.+.+ .-.++.+|.|.||+..|..+++.++-
T Consensus 2 ~~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC 51 (319)
T PRK06090 2 NNDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLC 51 (319)
T ss_pred CcCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 3567899988887752 34789999999999999988888764
|
|
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=83.58 E-value=8.9 Score=47.93 Aligned_cols=57 Identities=19% Similarity=0.146 Sum_probs=32.5
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecC-hhhHHHHHHHHHhhcCCce
Q 000384 62 TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPT-VHLVHQQYDVIRVHTDFEV 121 (1590)
Q Consensus 62 ~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt-~~Lv~Qq~~~i~~~~~~~v 121 (1590)
+.+++|||+|||.++..+...+.. ..+..+..++-+.+ +.=+.+|...+.+..++.+
T Consensus 259 i~LvGpnGvGKTTTiaKLA~~~~~---~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv 316 (484)
T PRK06995 259 FALMGPTGVGKTTTTAKLAARCVM---RHGASKVALLTTDSYRIGGHEQLRIYGKILGVPV 316 (484)
T ss_pred EEEECCCCccHHHHHHHHHHHHHH---hcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCe
Confidence 569999999999988887765532 12223333333333 2223445555555555433
|
|
| >CHL00095 clpC Clp protease ATP binding subunit | Back alignment and domain information |
|---|
Probab=83.40 E-value=5.3 Score=54.21 Aligned_cols=40 Identities=33% Similarity=0.326 Sum_probs=30.0
Q ss_pred CCcHHHHHHHHHHh----cCCEEEEeCCCChHHHHHHHHHHHHH
Q 000384 45 IPRIYQLKVFEVAK----RRNTIAVLETGAGKTMIAVMLIKDIA 84 (1590)
Q Consensus 45 ~pR~yQ~e~le~~~----~~n~Ii~~~TGsGKTliailli~~~l 84 (1590)
.-|+-+.+-+-.++ +.|+|+++|+|+|||.++-.+...+.
T Consensus 182 igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~ 225 (821)
T CHL00095 182 IGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIV 225 (821)
T ss_pred CCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 34666666555544 37999999999999999988777654
|
|
| >PRK05563 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=83.40 E-value=3.9 Score=52.65 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=20.2
Q ss_pred EEEEeCCCChHHHHHHHHHHHHH
Q 000384 62 TIAVLETGAGKTMIAVMLIKDIA 84 (1590)
Q Consensus 62 ~Ii~~~TGsGKTliailli~~~l 84 (1590)
.|+++|.|+|||.+|-.+.+.+.
T Consensus 41 yLf~Gp~GtGKTt~Ak~lAkal~ 63 (559)
T PRK05563 41 YLFSGPRGTGKTSAAKIFAKAVN 63 (559)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 68899999999999988887764
|
|
| >PHA00350 putative assembly protein | Back alignment and domain information |
|---|
Probab=83.39 E-value=6.3 Score=47.84 Aligned_cols=24 Identities=25% Similarity=0.109 Sum_probs=18.2
Q ss_pred EEEEeCCCChHHHHHHH-HHHHHHH
Q 000384 62 TIAVLETGAGKTMIAVM-LIKDIAQ 85 (1590)
Q Consensus 62 ~Ii~~~TGsGKTliail-li~~~l~ 85 (1590)
.++.+..|||||+-++. .|...+.
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~palk 28 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPALK 28 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHHH
Confidence 47899999999999886 3444443
|
|
| >PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin | Back alignment and domain information |
|---|
Probab=83.09 E-value=0.76 Score=49.58 Aligned_cols=42 Identities=17% Similarity=0.179 Sum_probs=28.5
Q ss_pred hcCCCcEEEEcHHHHHHHHHhcCcC--ccceeEEEEeccccccC
Q 000384 141 EINKNDVLVMTPQILLDALRKAFLS--LDIVCFIVIDECHHATG 182 (1590)
Q Consensus 141 ~~~~~~VlV~T~q~L~~~l~~~~~~--l~~i~lII~DEaH~~~~ 182 (1590)
....++|+|+++..|++-.....+. ...-.+|||||||++.+
T Consensus 116 ~~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 116 LAKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp CGGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred hcccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 3457899999999997754433221 22347999999999854
|
RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A. |
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
Probab=83.08 E-value=5.5 Score=52.63 Aligned_cols=94 Identities=14% Similarity=0.093 Sum_probs=70.3
Q ss_pred CHHHHHHHHHHHhcCCCCCcEEEEEEehHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHhcCCCc
Q 000384 396 STKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKV 475 (1590)
Q Consensus 396 s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~~~~~~r~~vl~~Fr~g~~ 475 (1590)
+.|....+..+...- ..+.++||.++++.-+..+.+.+++. -+..+..+||. ++..+|.+...+.++|+.
T Consensus 173 SGKT~v~l~~i~~~l-~~g~~vLvLvPt~~L~~Q~~~~l~~~---fg~~v~~~~s~------~s~~~r~~~~~~~~~g~~ 242 (679)
T PRK05580 173 SGKTEVYLQAIAEVL-AQGKQALVLVPEIALTPQMLARFRAR---FGAPVAVLHSG------LSDGERLDEWRKAKRGEA 242 (679)
T ss_pred ChHHHHHHHHHHHHH-HcCCeEEEEeCcHHHHHHHHHHHHHH---hCCCEEEEECC------CCHHHHHHHHHHHHcCCC
Confidence 678877666554322 23568999999999999998888763 14568889988 788999999999999999
Q ss_pred eEEEEcccccccccCCCccEEEEcc
Q 000384 476 NLLFATDVIEEGMHVPNCSYVIRFD 500 (1590)
Q Consensus 476 ~vLVaT~vleeGIDip~~~~VI~fD 500 (1590)
+|+|+|..+-- +.+.+..+||.-+
T Consensus 243 ~IVVgTrsal~-~p~~~l~liVvDE 266 (679)
T PRK05580 243 KVVIGARSALF-LPFKNLGLIIVDE 266 (679)
T ss_pred CEEEeccHHhc-ccccCCCEEEEEC
Confidence 99999974322 4455677776544
|
|
| >PRK09183 transposase/IS protein; Provisional | Back alignment and domain information |
|---|
Probab=83.06 E-value=4.8 Score=46.44 Aligned_cols=43 Identities=23% Similarity=0.292 Sum_probs=29.6
Q ss_pred cCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHH
Q 000384 59 RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQ 108 (1590)
Q Consensus 59 ~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Q 108 (1590)
+.|+++.+|+|+|||..+..+...... .+..++|+. ...|+.+
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~------~G~~v~~~~-~~~l~~~ 144 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVR------AGIKVRFTT-AADLLLQ 144 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHH------cCCeEEEEe-HHHHHHH
Confidence 488999999999999998887655433 234466654 3355533
|
|
| >PRK14965 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=83.03 E-value=2.8 Score=54.11 Aligned_cols=23 Identities=30% Similarity=0.323 Sum_probs=20.3
Q ss_pred EEEEeCCCChHHHHHHHHHHHHH
Q 000384 62 TIAVLETGAGKTMIAVMLIKDIA 84 (1590)
Q Consensus 62 ~Ii~~~TGsGKTliailli~~~l 84 (1590)
.|+++|.|+|||.+|..+.+.+.
T Consensus 41 yLf~Gp~G~GKtt~A~~lak~l~ 63 (576)
T PRK14965 41 FLFTGARGVGKTSTARILAKALN 63 (576)
T ss_pred EEEECCCCCCHHHHHHHHHHhhc
Confidence 58999999999999998887764
|
|
| >PRK14948 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=82.84 E-value=3.3 Score=53.76 Aligned_cols=26 Identities=27% Similarity=0.239 Sum_probs=22.2
Q ss_pred CCEEEEeCCCChHHHHHHHHHHHHHH
Q 000384 60 RNTIAVLETGAGKTMIAVMLIKDIAQ 85 (1590)
Q Consensus 60 ~n~Ii~~~TGsGKTliailli~~~l~ 85 (1590)
...|+++|.|+|||..|..+++.+..
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~lAk~L~c 64 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARILAKSLNC 64 (620)
T ss_pred ceEEEECCCCCChHHHHHHHHHHhcC
Confidence 45689999999999999998887753
|
|
| >PLN03187 meiotic recombination protein DMC1 homolog; Provisional | Back alignment and domain information |
|---|
Probab=82.70 E-value=2.3 Score=50.84 Aligned_cols=42 Identities=21% Similarity=0.142 Sum_probs=27.4
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecCh
Q 000384 62 TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTV 103 (1590)
Q Consensus 62 ~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~ 103 (1590)
+.|+++.|+|||..+..++..........+...+++|+-..-
T Consensus 129 tEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~ 170 (344)
T PLN03187 129 TEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEG 170 (344)
T ss_pred EEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCC
Confidence 569999999999988776544322111223345688887744
|
|
| >TIGR03689 pup_AAA proteasome ATPase | Back alignment and domain information |
|---|
Probab=82.50 E-value=3.5 Score=51.85 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=20.5
Q ss_pred CCEEEEeCCCChHHHHHHHHHHHH
Q 000384 60 RNTIAVLETGAGKTMIAVMLIKDI 83 (1590)
Q Consensus 60 ~n~Ii~~~TGsGKTliailli~~~ 83 (1590)
+++++++|+|+|||.++-.+..++
T Consensus 217 ~GILLyGPPGTGKT~LAKAlA~eL 240 (512)
T TIGR03689 217 KGVLLYGPPGCGKTLIAKAVANSL 240 (512)
T ss_pred cceEEECCCCCcHHHHHHHHHHhh
Confidence 679999999999999887776655
|
In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity. |
| >PRK05896 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=82.14 E-value=4.1 Score=51.99 Aligned_cols=24 Identities=38% Similarity=0.350 Sum_probs=21.1
Q ss_pred CEEEEeCCCChHHHHHHHHHHHHH
Q 000384 61 NTIAVLETGAGKTMIAVMLIKDIA 84 (1590)
Q Consensus 61 n~Ii~~~TGsGKTliailli~~~l 84 (1590)
..|+++|.|+|||..|..+++.+.
T Consensus 40 A~Lf~GP~GvGKTTlA~~lAk~L~ 63 (605)
T PRK05896 40 AYIFSGPRGIGKTSIAKIFAKAIN 63 (605)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Confidence 478999999999999999888764
|
|
| >PRK14955 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=81.94 E-value=4 Score=50.35 Aligned_cols=24 Identities=29% Similarity=0.217 Sum_probs=21.0
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHH
Q 000384 62 TIAVLETGAGKTMIAVMLIKDIAQ 85 (1590)
Q Consensus 62 ~Ii~~~TGsGKTliailli~~~l~ 85 (1590)
.|+++|.|+|||.+|..+.+.+..
T Consensus 41 ~lf~Gp~G~GKtt~A~~~a~~l~c 64 (397)
T PRK14955 41 YIFSGLRGVGKTTAARVFAKAVNC 64 (397)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcC
Confidence 789999999999999998877643
|
|
| >PRK05748 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=81.71 E-value=5 Score=50.41 Aligned_cols=115 Identities=12% Similarity=0.115 Sum_probs=60.2
Q ss_pred CEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHH-hhcCCceEE-EecCCCCCccchH-H
Q 000384 61 NTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIR-VHTDFEVEE-YYGAKGVDEWDSQ-C 137 (1590)
Q Consensus 61 n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~-~~~~~~v~~-~~G~~~~d~~~~~-~ 137 (1590)
-++|.+.+|+|||..++-++.+.+. ..+..|+|+..- .-..|....+- ...++.... ..|......|..- .
T Consensus 205 livIaarpg~GKT~~al~ia~~~a~-----~~g~~v~~fSlE-ms~~~l~~R~l~~~~~v~~~~i~~~~l~~~e~~~~~~ 278 (448)
T PRK05748 205 LIIVAARPSVGKTAFALNIAQNVAT-----KTDKNVAIFSLE-MGAESLVMRMLCAEGNIDAQRLRTGQLTDDDWPKLTI 278 (448)
T ss_pred eEEEEeCCCCCchHHHHHHHHHHHH-----hCCCeEEEEeCC-CCHHHHHHHHHHHhcCCCHHHhhcCCCCHHHHHHHHH
Confidence 3689999999999999988877653 123346666533 22345555543 333443332 2333333334211 1
Q ss_pred HHHhcCCCcEEEE-----cHHHHHHHHHhcCcCccceeEEEEecccccc
Q 000384 138 WQKEINKNDVLVM-----TPQILLDALRKAFLSLDIVCFIVIDECHHAT 181 (1590)
Q Consensus 138 w~~~~~~~~VlV~-----T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~ 181 (1590)
....+.+..+.|. |+..+...+++-.....++++||||=.|.+.
T Consensus 279 a~~~l~~~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~ 327 (448)
T PRK05748 279 AMGSLSDAPIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYLQLIQ 327 (448)
T ss_pred HHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccchhcC
Confidence 1122334445543 4444444332211111257899999888764
|
|
| >KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=81.68 E-value=0.36 Score=56.19 Aligned_cols=40 Identities=25% Similarity=0.279 Sum_probs=34.4
Q ss_pred CCCcHHHHHHHHHHhc-CCEEEEeCCCChHHHHHHHHHHHH
Q 000384 44 FIPRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDI 83 (1590)
Q Consensus 44 ~~pR~yQ~e~le~~~~-~n~Ii~~~TGsGKTliailli~~~ 83 (1590)
.-|.+.|.|+++.+++ .+++.+++||||||-++.++|.++
T Consensus 23 ~lptdvqaeaiplilgggdvlmaaetgsgktgaf~lpilqi 63 (725)
T KOG0349|consen 23 TLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPILQI 63 (725)
T ss_pred ccccccccccccEEecCCcEEEEeccCCCCccceehhhHHH
Confidence 3478999999999985 899999999999999888776654
|
|
| >PF11469 Ribonucleas_3_2: Ribonuclease III; InterPro: IPR021568 This archaeal family of proteins has no known function | Back alignment and domain information |
|---|
Probab=81.60 E-value=9.4 Score=35.84 Aligned_cols=79 Identities=27% Similarity=0.325 Sum_probs=54.1
Q ss_pred hhhhhhhhHhHHHHHHH--HhhCCCCCcchhHHHHHHhhchHHHHHHHHhCCCccccccccCCCCcccCCCccCCCCCCC
Q 000384 1066 LELLGDSVLKYAVSCHL--FLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPC 1143 (1590)
Q Consensus 1066 LE~LGDs~Lk~~~s~~l--~~~~p~~~eg~ls~~r~~~v~N~~L~~~a~~~gl~~~i~~~~f~~~~w~pp~~~~~~~~~~ 1143 (1590)
|.-+|||...|+.|.-| |.-+|+-. -|-|..|+..-..-||...+.-.
T Consensus 3 Lak~GDSLvNfl~SlALse~lG~Ptg~----------rVPnaSLaiAl~~a~L~~~~~PR-------------------- 52 (120)
T PF11469_consen 3 LAKFGDSLVNFLFSLALSEYLGRPTGD----------RVPNASLAIALELAGLSHLLPPR-------------------- 52 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTS-----------------HHHHHHHHHHTTGGGCS--C--------------------
T ss_pred HHHHhHHHHHHHHHHHHHHHhCCCCCC----------CCCChHHHHHHHHHhhhhhCccc--------------------
Confidence 67799999999999988 56666532 38899999888888887766411
Q ss_pred CCCCCcccccCCCcccccccceecCCcCCCCccccccchhhhHHHHHHHHhhhccCh--hHHHHHHH
Q 000384 1144 ECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGL--IAALYMMK 1208 (1590)
Q Consensus 1144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~iAD~vEAliGA~~~~~G~--~~a~~~~~ 1208 (1590)
+....-.|..||+|.-+++.|-+ +.|..+++
T Consensus 53 ----------------------------------~dkh~kGd~aEA~iAyAWLeg~it~eEaveil~ 85 (120)
T PF11469_consen 53 ----------------------------------TDKHGKGDIAEALIAYAWLEGKITIEEAVEILK 85 (120)
T ss_dssp ----------------------------------GGCCGHHHHHHHHHHHHHHTTSS-HHHHHHHHH
T ss_pred ----------------------------------ccccCccHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 11223469999999999999875 56666553
|
; PDB: 1ZTD_A. |
| >PRK08939 primosomal protein DnaI; Reviewed | Back alignment and domain information |
|---|
Probab=81.56 E-value=4.1 Score=48.15 Aligned_cols=26 Identities=15% Similarity=0.333 Sum_probs=23.0
Q ss_pred CCEEEEeCCCChHHHHHHHHHHHHHH
Q 000384 60 RNTIAVLETGAGKTMIAVMLIKDIAQ 85 (1590)
Q Consensus 60 ~n~Ii~~~TGsGKTliailli~~~l~ 85 (1590)
+++++.+++|+|||+.+..+..++..
T Consensus 157 ~gl~L~G~~G~GKThLa~Aia~~l~~ 182 (306)
T PRK08939 157 KGLYLYGDFGVGKSYLLAAIANELAK 182 (306)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 47999999999999999988888765
|
|
| >TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA | Back alignment and domain information |
|---|
Probab=81.45 E-value=6.5 Score=52.64 Aligned_cols=27 Identities=44% Similarity=0.487 Sum_probs=23.0
Q ss_pred cCCEEEEeCCCChHHHHHHHHHHHHHH
Q 000384 59 RRNTIAVLETGAGKTMIAVMLIKDIAQ 85 (1590)
Q Consensus 59 ~~n~Ii~~~TGsGKTliailli~~~l~ 85 (1590)
+.|+|+++|+|+|||.++-.+...+..
T Consensus 203 ~~n~lL~G~pG~GKT~l~~~la~~~~~ 229 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIAEGLALRIAE 229 (731)
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 379999999999999998888777654
|
|
| >COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=81.43 E-value=2.8 Score=48.84 Aligned_cols=126 Identities=19% Similarity=0.212 Sum_probs=71.0
Q ss_pred CcHHHHHHHHHHhcCCE-EEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhhcCCceEEE
Q 000384 46 PRIYQLKVFEVAKRRNT-IAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEY 124 (1590)
Q Consensus 46 pR~yQ~e~le~~~~~n~-Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~~~~v~~~ 124 (1590)
..+-|..-++.+.+.++ ...+|-|+|||+.|+...-+.+. .+.-++++.-=|-+++ |.+-+.+
T Consensus 129 kt~~Q~~y~eai~~~di~fGiGpAGTGKTyLava~av~al~----~~~v~rIiLtRPaVEA------------GEklGfL 192 (348)
T COG1702 129 KTPGQNMYPEAIEEHDIVFGIGPAGTGKTYLAVAKAVDALG----AGQVRRIILTRPAVEA------------GEKLGFL 192 (348)
T ss_pred cChhHHHHHHHHHhcCeeeeecccccCChhhhHHhHhhhhh----hcccceeeecCcchhc------------CcccCcC
Confidence 35688888888877664 57789999999999887666654 3344556655564333 4455555
Q ss_pred ecCCC--CCccchHHHHHhcCCCcEEEEcHHHHHHHHHhcCc--------Cccc--eeEEEEeccccccCCCcHHHHHHH
Q 000384 125 YGAKG--VDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL--------SLDI--VCFIVIDECHHATGNHPYTKIMKE 192 (1590)
Q Consensus 125 ~G~~~--~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~~~~--------~l~~--i~lII~DEaH~~~~~~~~~~im~~ 192 (1590)
-|+.. ++.+....|+.+.. ++-++.+..++..+.+ .-.. =.+||+||+|... ...|+.
T Consensus 193 PGdl~eKvdPylRPLyDAl~d-----~l~~~~~~~~~e~~vIEiAPlAyMRGRTL~dAfVIlDEaQNtT-----~~QmKM 262 (348)
T COG1702 193 PGDLREKVDPYLRPLYDALYD-----ILGAERVEALDERGVIEIAPLAYMRGRTLNDAFVILDEAQNTT-----VGQMKM 262 (348)
T ss_pred CCchhhhcccccccHHHHHHH-----HhhHHHHhhhhhcCcEEecchhhhhcCCCCCeEEEEecccccc-----hhhhce
Confidence 55543 33333333433221 1122222222222221 1111 2589999999843 345777
Q ss_pred HHhcC
Q 000384 193 FYHKS 197 (1590)
Q Consensus 193 ~~~~~ 197 (1590)
|+...
T Consensus 263 fLTRi 267 (348)
T COG1702 263 FLTRI 267 (348)
T ss_pred eeeee
Confidence 65543
|
|
| >KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=81.38 E-value=7.3 Score=44.11 Aligned_cols=100 Identities=20% Similarity=0.274 Sum_probs=61.4
Q ss_pred CCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhhcCCceEEEecCCCCCccchHHHH
Q 000384 60 RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQ 139 (1590)
Q Consensus 60 ~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~~~~v~~~~G~~~~d~~~~~~w~ 139 (1590)
+.+++++|.|+||++.|-...-+. + ..+|-|.+..||..|.-+-++. ..
T Consensus 167 rgiLLyGPPGTGKSYLAKAVATEA---------n-STFFSvSSSDLvSKWmGESEkL---------------------Vk 215 (439)
T KOG0739|consen 167 RGILLYGPPGTGKSYLAKAVATEA---------N-STFFSVSSSDLVSKWMGESEKL---------------------VK 215 (439)
T ss_pred eeEEEeCCCCCcHHHHHHHHHhhc---------C-CceEEeehHHHHHHHhccHHHH---------------------HH
Confidence 468999999999998775543321 2 3789999989988775443322 01
Q ss_pred HhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeccccccCC------CcHHHHHHHHHhcC----CCCCcEEEEecc
Q 000384 140 KEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGN------HPYTKIMKEFYHKS----DNKPKVFGMTAS 209 (1590)
Q Consensus 140 ~~~~~~~VlV~T~q~L~~~l~~~~~~l~~i~lII~DEaH~~~~~------~~~~~im~~~~~~~----~~~priLgLTAT 209 (1590)
. |..+-+ -..-++|.+||.+.+.+. ..-++|-.+|+-+. +..--+|.|-||
T Consensus 216 n--------------LFemAR-----e~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgAT 276 (439)
T KOG0739|consen 216 N--------------LFEMAR-----ENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGAT 276 (439)
T ss_pred H--------------HHHHHH-----hcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecC
Confidence 1 111111 134578999999977643 23567777777653 233455555555
|
|
| >PRK06871 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=81.35 E-value=5.9 Score=47.04 Aligned_cols=40 Identities=8% Similarity=0.086 Sum_probs=31.6
Q ss_pred CcHHHHHHHHHHhc--------CCEEEEeCCCChHHHHHHHHHHHHHH
Q 000384 46 PRIYQLKVFEVAKR--------RNTIAVLETGAGKTMIAVMLIKDIAQ 85 (1590)
Q Consensus 46 pR~yQ~e~le~~~~--------~n~Ii~~~TGsGKTliailli~~~l~ 85 (1590)
..|||...++.+.+ .-.++.+|.|.||+..|..+.+.++-
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC 50 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMC 50 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcC
Confidence 46888888777642 34679999999999999998888764
|
|
| >TIGR00767 rho transcription termination factor Rho | Back alignment and domain information |
|---|
Probab=81.32 E-value=2.4 Score=51.06 Aligned_cols=25 Identities=24% Similarity=0.329 Sum_probs=20.6
Q ss_pred cCCEEEEeCCCChHHHHHHHHHHHH
Q 000384 59 RRNTIAVLETGAGKTMIAVMLIKDI 83 (1590)
Q Consensus 59 ~~n~Ii~~~TGsGKTliailli~~~ 83 (1590)
++.+.|++|+|+|||.++.++...+
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I 192 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAI 192 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhh
Confidence 5889999999999998777655544
|
Members of this family differ in the specificity of RNA binding. |
| >PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP | Back alignment and domain information |
|---|
Probab=81.20 E-value=2.6 Score=47.49 Aligned_cols=35 Identities=20% Similarity=0.228 Sum_probs=21.9
Q ss_pred cHHHHHHHHHHh----cCCEEEEeCCCChHHHHHHHHHH
Q 000384 47 RIYQLKVFEVAK----RRNTIAVLETGAGKTMIAVMLIK 81 (1590)
Q Consensus 47 R~yQ~e~le~~~----~~n~Ii~~~TGsGKTliailli~ 81 (1590)
|.-..+.+..++ .+.++|.+|-|+|||...-.++.
T Consensus 4 R~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~ 42 (234)
T PF01637_consen 4 REKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFIN 42 (234)
T ss_dssp -HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHH
Confidence 344444444444 25688999999999985444433
|
; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A. |
| >PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit | Back alignment and domain information |
|---|
Probab=81.14 E-value=3 Score=47.31 Aligned_cols=88 Identities=18% Similarity=0.168 Sum_probs=57.6
Q ss_pred CCCeEEEEEecChhhHHHHHHHHHhhc--CCceEEEecCC-CCCccchHHHHHhcCCCcEEEEcHHHHHHHHHhcCcCcc
Q 000384 91 GFKKLIIFLAPTVHLVHQQYDVIRVHT--DFEVEEYYGAK-GVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLD 167 (1590)
Q Consensus 91 ~~~~~vl~LvPt~~Lv~Qq~~~i~~~~--~~~v~~~~G~~-~~d~~~~~~w~~~~~~~~VlV~T~q~L~~~l~~~~~~l~ 167 (1590)
.+.+.++||+..--=|-...+.++.+- +..|..+..-. .+++ +.....-...+|.|+||+++..++..+.+.++
T Consensus 124 ~gsP~~lvvs~SalRa~dl~R~l~~~~~k~~~v~KLFaKH~Kl~e---qv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~ 200 (252)
T PF14617_consen 124 KGSPHVLVVSSSALRAADLIRALRSFKGKDCKVAKLFAKHIKLEE---QVKLLKKTRVHIAVGTPGRLSKLLENGALSLS 200 (252)
T ss_pred CCCCEEEEEcchHHHHHHHHHHHHhhccCCchHHHHHHhhccHHH---HHHHHHhCCceEEEeChHHHHHHHHcCCCCcc
Confidence 445678888887444555555555543 13344443322 2221 11111224689999999999999999999999
Q ss_pred ceeEEEEecccccc
Q 000384 168 IVCFIVIDECHHAT 181 (1590)
Q Consensus 168 ~i~lII~DEaH~~~ 181 (1590)
++..||+|--|.=.
T Consensus 201 ~l~~ivlD~s~~D~ 214 (252)
T PF14617_consen 201 NLKRIVLDWSYLDQ 214 (252)
T ss_pred cCeEEEEcCCcccc
Confidence 99999999887643
|
|
| >PRK14951 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=80.97 E-value=4.1 Score=52.57 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=20.6
Q ss_pred EEEEeCCCChHHHHHHHHHHHHH
Q 000384 62 TIAVLETGAGKTMIAVMLIKDIA 84 (1590)
Q Consensus 62 ~Ii~~~TGsGKTliailli~~~l 84 (1590)
.|++++.|+|||.+|..+++.+.
T Consensus 41 ~Lf~Gp~GvGKTtlAr~lAk~Ln 63 (618)
T PRK14951 41 YLFTGTRGVGKTTVSRILAKSLN 63 (618)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 48999999999999999888775
|
|
| >TIGR00678 holB DNA polymerase III, delta' subunit | Back alignment and domain information |
|---|
Probab=80.91 E-value=7.6 Score=42.37 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=22.2
Q ss_pred CCEEEEeCCCChHHHHHHHHHHHHHH
Q 000384 60 RNTIAVLETGAGKTMIAVMLIKDIAQ 85 (1590)
Q Consensus 60 ~n~Ii~~~TGsGKTliailli~~~l~ 85 (1590)
...|+.+|.|+|||..+..+++.+..
T Consensus 15 ~~~L~~G~~G~gkt~~a~~~~~~l~~ 40 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLALALAKALLC 40 (188)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 45789999999999999988887754
|
At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau. |
| >COG4626 Phage terminase-like protein, large subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.89 E-value=9.1 Score=47.67 Aligned_cols=174 Identities=13% Similarity=0.046 Sum_probs=97.0
Q ss_pred CCCCCCCcHHHHHHHHHHhc-----------CCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHH
Q 000384 40 NSINFIPRIYQLKVFEVAKR-----------RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQ 108 (1590)
Q Consensus 40 ~~~~~~pR~yQ~e~le~~~~-----------~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Q 108 (1590)
....+.+-|||.-++-.+.+ +-.+|.+|-|-|||..+..++...+.-. ...+..+.+++|+..-+.+
T Consensus 56 ~~~p~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~--~~~~~~~~i~A~s~~qa~~ 133 (546)
T COG4626 56 PGFPESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLN--WRSGAGIYILAPSVEQAAN 133 (546)
T ss_pred CCCccccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhh--hhcCCcEEEEeccHHHHHH
Confidence 55678899999999988863 2368999999999987665444332211 1344558999999888877
Q ss_pred HHHHHHhhcCCceEEEecCCCCCccchHHHHHhcCCCcEEEEcHHH---HHHHHHh--cCcCccceeEEEEeccccccCC
Q 000384 109 QYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQI---LLDALRK--AFLSLDIVCFIVIDECHHATGN 183 (1590)
Q Consensus 109 q~~~i~~~~~~~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~---L~~~l~~--~~~~l~~i~lII~DEaH~~~~~ 183 (1590)
-+..++...-..- +.. -......+.+. ++... .+..+.+ +...-.+..+.||||.|...+.
T Consensus 134 ~F~~ar~mv~~~~-----~l~--------~~~~~q~~s~~-i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~ 199 (546)
T COG4626 134 SFNPARDMVKRDD-----DLR--------DLCNVQTHSRT-ITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQ 199 (546)
T ss_pred hhHHHHHHHHhCc-----chh--------hhhccccceeE-EEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCH
Confidence 7777776531100 000 00001111111 11111 1122221 2333455679999999998774
Q ss_pred -CcHHHHHHHHHhcCCCCCcEEEEeccCCccCCCCChhcHHHHHHHHHhhcCCe
Q 000384 184 -HPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQ 236 (1590)
Q Consensus 184 -~~~~~im~~~~~~~~~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~ 236 (1590)
.-|+.+... ....+.+.+++.|-++....+ -+.+........++..
T Consensus 200 ~~~~~~~~~g--~~ar~~~l~~~ITT~g~~~~g-----~~~q~~~y~k~vl~g~ 246 (546)
T COG4626 200 EDMYSEAKGG--LGARPEGLVVYITTSGDPPAG-----VFKQKLQYAKDVLDGK 246 (546)
T ss_pred HHHHHHHHhh--hccCcCceEEEEecCCCCCcc-----HHHHHHHHHHHHhcCC
Confidence 223322221 112456788888865443332 3455566666666543
|
|
| >TIGR01073 pcrA ATP-dependent DNA helicase PcrA | Back alignment and domain information |
|---|
Probab=80.48 E-value=3 Score=55.88 Aligned_cols=87 Identities=13% Similarity=0.026 Sum_probs=64.9
Q ss_pred CCcHHHHHHHHHHhcCCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHHHHHHHHHhhcCCceEEE
Q 000384 45 IPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEY 124 (1590)
Q Consensus 45 ~pR~yQ~e~le~~~~~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~Qq~~~i~~~~~~~v~~~ 124 (1590)
.+.+-|.+++.. ...+++|.+..|||||.+.+..|.+++... .-....+|+++-|+.-+....+.+.+.++-
T Consensus 4 ~Ln~~Q~~av~~-~~g~~lV~AgaGSGKT~~l~~ria~Li~~~--~i~P~~IL~lTFT~kAA~em~~Rl~~~~~~----- 75 (726)
T TIGR01073 4 HLNPEQREAVKT-TEGPLLIMAGAGSGKTRVLTHRIAHLIAEK--NVAPWNILAITFTNKAAREMKERVEKLLGP----- 75 (726)
T ss_pred ccCHHHHHHHhC-CCCCEEEEeCCCCCHHHHHHHHHHHHHHcC--CCCHHHeeeeeccHHHHHHHHHHHHHHhcc-----
Confidence 478999999864 468899999999999999999888887511 112345899999988888777777765431
Q ss_pred ecCCCCCccchHHHHHhcCCCcEEEEcHHHHHH
Q 000384 125 YGAKGVDEWDSQCWQKEINKNDVLVMTPQILLD 157 (1590)
Q Consensus 125 ~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L~~ 157 (1590)
. ..++.|+|...|..
T Consensus 76 ------~------------~~~~~i~TFHs~~~ 90 (726)
T TIGR01073 76 ------V------------AEDIWISTFHSMCV 90 (726)
T ss_pred ------c------------cCCcEEEcHHHHHH
Confidence 0 13578899887744
|
Designed to identify pcrA members of the uvrD/rep subfamily. |
| >PRK06647 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=80.46 E-value=5.7 Score=51.01 Aligned_cols=24 Identities=25% Similarity=0.141 Sum_probs=21.1
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHH
Q 000384 62 TIAVLETGAGKTMIAVMLIKDIAQ 85 (1590)
Q Consensus 62 ~Ii~~~TGsGKTliailli~~~l~ 85 (1590)
.|+++|.|+|||.+|-.+++.+..
T Consensus 41 yLf~Gp~G~GKTt~Ar~lAk~L~c 64 (563)
T PRK06647 41 YIFSGPRGVGKTSSARAFARCLNC 64 (563)
T ss_pred EEEECCCCCCHHHHHHHHHHhhcc
Confidence 689999999999999998887753
|
|
| >PRK14950 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=80.40 E-value=4.7 Score=52.36 Aligned_cols=23 Identities=30% Similarity=0.325 Sum_probs=20.4
Q ss_pred EEEEeCCCChHHHHHHHHHHHHH
Q 000384 62 TIAVLETGAGKTMIAVMLIKDIA 84 (1590)
Q Consensus 62 ~Ii~~~TGsGKTliailli~~~l 84 (1590)
.|+++|.|+|||.++..+++.+.
T Consensus 41 ~Lf~Gp~G~GKTtlA~~lA~~l~ 63 (585)
T PRK14950 41 YLFTGPRGVGKTSTARILAKAVN 63 (585)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 58999999999999999887764
|
|
| >PRK07471 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=80.29 E-value=8 Score=46.93 Aligned_cols=25 Identities=16% Similarity=0.130 Sum_probs=22.4
Q ss_pred CEEEEeCCCChHHHHHHHHHHHHHH
Q 000384 61 NTIAVLETGAGKTMIAVMLIKDIAQ 85 (1590)
Q Consensus 61 n~Ii~~~TGsGKTliailli~~~l~ 85 (1590)
-.|+.+|.|+||+..|..+++.++.
T Consensus 43 A~Lf~Gp~G~GK~~lA~~~A~~Llc 67 (365)
T PRK07471 43 AWLIGGPQGIGKATLAYRMARFLLA 67 (365)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhC
Confidence 4789999999999999999988874
|
|
| >PRK13709 conjugal transfer nickase/helicase TraI; Provisional | Back alignment and domain information |
|---|
Probab=80.20 E-value=11 Score=54.10 Aligned_cols=63 Identities=17% Similarity=0.068 Sum_probs=43.1
Q ss_pred CCCCcHHHHHHHHHHhc---CCEEEEeCCCChHHHHHHHHHHHHHHHHHhCCCCeEEEEEecChhhHH
Q 000384 43 NFIPRIYQLKVFEVAKR---RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVH 107 (1590)
Q Consensus 43 ~~~pR~yQ~e~le~~~~---~n~Ii~~~TGsGKTliailli~~~l~~~~~~~~~~~vl~LvPt~~Lv~ 107 (1590)
.+.+.+-|.+++..++. +-++|.+..|+|||.+.-.++..+ .... ...+..++.++||---+.
T Consensus 965 ~~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l~~v~~~~-~~l~-~~~~~~V~glAPTgrAAk 1030 (1747)
T PRK13709 965 MEGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFRAVMSAV-NTLP-ESERPRVVGLGPTHRAVG 1030 (1747)
T ss_pred cCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHH-HHhh-cccCceEEEECCcHHHHH
Confidence 45789999999999884 467899999999998754433322 2111 123345888999954443
|
|
| >KOG3792 consensus Transcription factor NFAT, subunit NF90 [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.13 E-value=2 Score=53.53 Aligned_cols=181 Identities=15% Similarity=0.063 Sum_probs=93.9
Q ss_pred ChhhHHHHHHHh-cCCcc-----eeeeeeeCce--EEEEEEEEEcCeEEEEEEEeCCHHHHHHHHHHHHHHHhhhhhhhc
Q 000384 1358 PPLRELIELCDS-LGYFV-----KENCTLKGEM--VHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEVCEKRI 1429 (1590)
Q Consensus 1358 ~P~~~L~e~~~~-~~~~~-----~~~~~~~g~~--~~~~~~v~~~g~~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~~~~ 1429 (1590)
+|...+..+-++ ++... |..+...|+. ++|+.+|.+++..+. ..|.+++.|+..||++.|+.... .
T Consensus 371 d~nak~mhl~grRhrLQYk~kv~p~Lvv~t~P~~~~~~t~e~r~~~~~~~--a~gps~~~~~wh~~~k~lq~~~~---p- 444 (816)
T KOG3792|consen 371 DPNAKEMHLKGRRHRLQYKQKVDPDLVVDTKPSHRPRRTMEVRVNGLPAE--AEGPSKKTAKWHAARKRLQNEGR---P- 444 (816)
T ss_pred CcchHHhhhhcccccceeccccCCCceeccCCcccchhhhhhhhcCCccc--cCCcccccchHHHHHHHhhccCC---C-
Confidence 455566655553 33221 2345556766 569999999997554 55999999999999988877632 0
Q ss_pred ccCCCCCCcCCCccccCCCCCCCCCcccccccCccc--cccCCCccccccc-cc-----CCCccccccccccCCchhhHH
Q 000384 1430 SKGASNTGKLGDDCRQTTKEDLPEPPSCKRQKGTEA--AIPAGDSCKKAYC-MT-----VGTPVVAPINMKKGGPRTSLF 1501 (1590)
Q Consensus 1430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~k~~L~ 1501 (1590)
.+.. ..+.+. +. . +...+.+++... +......+..+.+ ++ ........++-..+++...|+
T Consensus 445 -~ga~--~r~~~~-ge-~------~a~~p~~~~r~~as~ddr~a~~~~a~~~Pt~~~l~nVqr~vs~~~~alK~vsd~L~ 513 (816)
T KOG3792|consen 445 -TGAA--QRFGRM-GE-D------PASMPEPKGRRPASVDDRHANEKHAGIYPTEEELENVQRQVSHLERALKLVSDELA 513 (816)
T ss_pred -cccc--cccccc-CC-C------cccCCCCCCcccCCCcchhhhccccccCccHHHHHHHHHhhhHHHHhhcchhHHHh
Confidence 0000 000010 00 0 001111000000 0000000000000 00 000112222233456667777
Q ss_pred HHHHhCCCCCCceeEeecccccccccccC-CcccccceeeEEEEEEEecCCceEEEeCCCCCCccchhhhHHHHHHHH
Q 000384 1502 QLCKTMLWPMPTFETTESKSRTLLVFCEG-LEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAALIMLHE 1578 (1590)
Q Consensus 1502 e~~~~~~~~~P~y~~~~~~~~~~~~~~~G-p~h~~~~~~F~~~v~i~~~~~~~~~~~g~~~~sKK~A~~~AA~~~l~~ 1578 (1590)
|- ++ --.|++..+ .| -+|. +.|+..|.+... .+.|.+ .+||-|+..||..++.-
T Consensus 514 Ek---~r--g~k~El~se---------t~~gs~~---~R~v~gV~rvG~-----~akG~~-~~gd~a~~~a~Lca~~p 568 (816)
T KOG3792|consen 514 EK---RR--GDKYELPSE---------TGTGSHD---KRFVKGVMRVGI-----LAKGLL-LNGDRAVELALLCAEKP 568 (816)
T ss_pred hh---cc--ccceecccc---------cCCCCCC---ceeeeeeeeeeh-----hhcccc-ccchHHHHHHHHhccCc
Confidence 73 22 238998877 45 8898 899988876322 344544 77999999998887753
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1590 | ||||
| 4a2w_A | 936 | Structure Of Full-Length Duck Rig-I Length = 936 | 1e-27 | ||
| 4a2q_A | 797 | Structure Of Duck Rig-I Tandem Cards And Helicase D | 2e-27 | ||
| 4a2p_A | 556 | Structure Of Duck Rig-I Helicase Domain Length = 55 | 6e-27 | ||
| 3tmi_A | 695 | Structural Basis For Rna Recognition And Activation | 8e-24 | ||
| 4ay2_A | 687 | Capturing 5' Tri-Phosphorylated Rna Duplex By Rig-I | 3e-23 | ||
| 2ykg_A | 696 | Structural Insights Into Rna Recognition By Rig-I L | 5e-23 | ||
| 4gl2_A | 699 | Structural Basis For Dsrna Duplex Backbone Recognit | 7e-23 | ||
| 1wp9_A | 494 | Crystal Structure Of Pyrococcus Furiosus Hef Helica | 7e-17 | ||
| 1wp9_A | 494 | Crystal Structure Of Pyrococcus Furiosus Hef Helica | 1e-05 | ||
| 3tbk_A | 555 | Mouse Rig-I Atpase Domain Length = 555 | 1e-15 | ||
| 3tbk_A | 555 | Mouse Rig-I Atpase Domain Length = 555 | 2e-09 | ||
| 2kou_A | 102 | Dicer Like Protein Length = 102 | 9e-14 | ||
| 3b6e_A | 216 | Crystal Structure Of Human Dech-Box Rna Helicase Md | 5e-10 | ||
| 2jgn_A | 185 | Ddx3 Helicase Domain Length = 185 | 3e-06 | ||
| 2i4i_A | 417 | Crystal Structure Of Human Dead-Box Rna Helicase Dd | 4e-06 | ||
| 4i1s_A | 243 | Melanoma Differentiation Associated Protein-5 Helic | 7e-06 | ||
| 2eb1_A | 200 | Crystal Structure Of The C-Terminal Rnase Iii Domai | 1e-05 | ||
| 3c4t_A | 265 | Structure Of Rnaseiiib And Dsrna Binding Domains Of | 1e-05 | ||
| 2p6n_A | 191 | Human Dead-box Rna Helicase Ddx41, Helicase Domain | 2e-05 | ||
| 2yjt_D | 170 | Crystal Structure Of E. Coli Dead-Box Protein Srmb | 3e-05 | ||
| 2hyi_C | 413 | Structure Of The Human Exon Junction Complex With A | 4e-05 | ||
| 2xb2_A | 411 | Crystal Structure Of The Core Mago-Y14-Eif4aiii-Bar | 4e-05 | ||
| 2j0q_A | 410 | The Crystal Structure Of The Exon Junction Complex | 4e-05 | ||
| 2hxy_A | 391 | Crystal Structure Of Human Apo-Eif4aiii Length = 39 | 4e-05 | ||
| 2j0u_A | 374 | The Crystal Structure Of Eif4aiii-Barentsz Complex | 4e-05 | ||
| 2j0u_B | 374 | The Crystal Structure Of Eif4aiii-Barentsz Complex | 4e-05 | ||
| 1oyw_A | 523 | Structure Of The Recq Catalytic Core Length = 523 | 2e-04 | ||
| 3n3w_A | 248 | 2.2 Angstrom Resolution Crystal Structure Of Nuclea | 2e-04 | ||
| 3o2r_A | 170 | Structural Flexibility In Region Involved In Dimer | 2e-04 | ||
| 1oyy_A | 523 | Structure Of The Recq Catalytic Core Bound To Atp-G | 2e-04 | ||
| 2db3_A | 434 | Structural Basis For Rna Unwinding By The Dead-Box | 2e-04 | ||
| 2z0m_A | 337 | Crystal Structure Of Hypothetical Atp-Dependent Rna | 3e-04 | ||
| 1s2m_A | 400 | Crystal Structure Of The Dead Box Protein Dhh1p Len | 3e-04 | ||
| 2hjv_A | 163 | Structure Of The Second Domain (Residues 207-368) O | 7e-04 |
| >pdb|4A2W|A Chain A, Structure Of Full-Length Duck Rig-I Length = 936 | Back alignment and structure |
|
| >pdb|4A2Q|A Chain A, Structure Of Duck Rig-I Tandem Cards And Helicase Domain Length = 797 | Back alignment and structure |
|
| >pdb|4A2P|A Chain A, Structure Of Duck Rig-I Helicase Domain Length = 556 | Back alignment and structure |
|
| >pdb|3TMI|A Chain A, Structural Basis For Rna Recognition And Activation Of Rig-I Length = 695 | Back alignment and structure |
|
| >pdb|4AY2|A Chain A, Capturing 5' Tri-Phosphorylated Rna Duplex By Rig-I Length = 687 | Back alignment and structure |
|
| >pdb|2YKG|A Chain A, Structural Insights Into Rna Recognition By Rig-I Length = 696 | Back alignment and structure |
|
| >pdb|4GL2|A Chain A, Structural Basis For Dsrna Duplex Backbone Recognition By Mda5 Length = 699 | Back alignment and structure |
|
| >pdb|1WP9|A Chain A, Crystal Structure Of Pyrococcus Furiosus Hef Helicase Domain Length = 494 | Back alignment and structure |
|
| >pdb|1WP9|A Chain A, Crystal Structure Of Pyrococcus Furiosus Hef Helicase Domain Length = 494 | Back alignment and structure |
|
| >pdb|3TBK|A Chain A, Mouse Rig-I Atpase Domain Length = 555 | Back alignment and structure |
|
| >pdb|3TBK|A Chain A, Mouse Rig-I Atpase Domain Length = 555 | Back alignment and structure |
|
| >pdb|2KOU|A Chain A, Dicer Like Protein Length = 102 | Back alignment and structure |
|
| >pdb|3B6E|A Chain A, Crystal Structure Of Human Dech-Box Rna Helicase Mda5 (Melanoma Differentiation-Associated Protein 5), Dech-Domain Length = 216 | Back alignment and structure |
|
| >pdb|2JGN|A Chain A, Ddx3 Helicase Domain Length = 185 | Back alignment and structure |
|
| >pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x Length = 417 | Back alignment and structure |
|
| >pdb|4I1S|A Chain A, Melanoma Differentiation Associated Protein-5 Helicase Domain Complex With Inhibitor Non-structural Protein V Length = 243 | Back alignment and structure |
|
| >pdb|2EB1|A Chain A, Crystal Structure Of The C-Terminal Rnase Iii Domain Of Human Dicer Length = 200 | Back alignment and structure |
|
| >pdb|3C4T|A Chain A, Structure Of Rnaseiiib And Dsrna Binding Domains Of Mouse Dicer Length = 265 | Back alignment and structure |
|
| >pdb|2P6N|A Chain A, Human Dead-box Rna Helicase Ddx41, Helicase Domain Length = 191 | Back alignment and structure |
|
| >pdb|2YJT|D Chain D, Crystal Structure Of E. Coli Dead-Box Protein Srmb Bound To Regulator Of Ribonuclease Activity A (Rraa) Length = 170 | Back alignment and structure |
|
| >pdb|2HYI|C Chain C, Structure Of The Human Exon Junction Complex With A Trapped Dead-Box Helicase Bound To Rna Length = 413 | Back alignment and structure |
|
| >pdb|2XB2|A Chain A, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz- Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd Machinery Length = 411 | Back alignment and structure |
|
| >pdb|2J0Q|A Chain A, The Crystal Structure Of The Exon Junction Complex At 3.2 A Resolution Length = 410 | Back alignment and structure |
|
| >pdb|2HXY|A Chain A, Crystal Structure Of Human Apo-Eif4aiii Length = 391 | Back alignment and structure |
|
| >pdb|2J0U|A Chain A, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0 A Resolution Length = 374 | Back alignment and structure |
|
| >pdb|2J0U|B Chain B, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0 A Resolution Length = 374 | Back alignment and structure |
|
| >pdb|1OYW|A Chain A, Structure Of The Recq Catalytic Core Length = 523 | Back alignment and structure |
|
| >pdb|3N3W|A Chain A, 2.2 Angstrom Resolution Crystal Structure Of Nuclease Domain Ribonuclase Iii (Rnc) From Campylobacter Jejuni Length = 248 | Back alignment and structure |
|
| >pdb|3O2R|A Chain A, Structural Flexibility In Region Involved In Dimer Formation Of Nuclease Domain Of Ribonuclase Iii (Rnc) From Campylobacter Jejuni Length = 170 | Back alignment and structure |
|
| >pdb|1OYY|A Chain A, Structure Of The Recq Catalytic Core Bound To Atp-Gamma-S Length = 523 | Back alignment and structure |
|
| >pdb|2DB3|A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein Drosophila Vasa Length = 434 | Back alignment and structure |
|
| >pdb|2Z0M|A Chain A, Crystal Structure Of Hypothetical Atp-Dependent Rna Helicase From Sulfolobus Tokodaii Length = 337 | Back alignment and structure |
|
| >pdb|1S2M|A Chain A, Crystal Structure Of The Dead Box Protein Dhh1p Length = 400 | Back alignment and structure |
|
| >pdb|2HJV|A Chain A, Structure Of The Second Domain (Residues 207-368) Of The Bacillus Subtilis Yxin Protein Length = 163 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} Length = 555 | Back alignment and structure |
|---|
Score = 330 bits (846), Expect = 2e-99
Identities = 122/511 (23%), Positives = 211/511 (41%), Gaps = 25/511 (4%)
Query: 43 NFIPRIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAP 101
PR YQL++ A K +NTI TG GKT +++++ + + K ++F A
Sbjct: 2 PLKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGK-VVFFAN 60
Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
+ + QQ V + + + + DS Q I ND++++TPQIL++ L
Sbjct: 61 QIPVYEQQATVFSRYFER-LGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNN 119
Query: 162 AFL-SLDIVCFIVIDECHHATGNHPYTKIMKEFYH-----KSDNKPKVFGMTASPVVRKG 215
+ SL + ++ DECH+ + NHPY +IM + D P+V G+TAS
Sbjct: 120 GAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGESRDPLPQVVGLTASVG-VGD 178
Query: 216 VSSAMDCEGQISELESTLDSQVFTI--EDKTEMEVFVPSAKESCRFY-----DQSKFCGS 268
+A + I +L + LD+ V ++ E+E V ++ R + K S
Sbjct: 179 AKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIIS 238
Query: 269 DLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLIC 328
L + E L KL Q + + + + ++ +E +
Sbjct: 239 QLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCK 298
Query: 329 AYEAVKICLEKVLKAQEECEIYRQSSL--QCKYFLEEVLHVIGSALP--LADKIFLDFGF 384
A L K A E + + K F +V L +
Sbjct: 299 ALFLYTSHLRKYNDALIISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEE 358
Query: 385 DYSKAVDLGYISTKLHELLQLFLS-FGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHL 443
+ D + KL +L + + + I+FV+ +++++++ P L+ L
Sbjct: 359 LEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFL 418
Query: 444 TVAYLTG--STTSVDALTPKVQKEVLESFR-GGKVNLLFATDVIEEGMHVPNCSYVIRFD 500
LTG T +T QK VLE+FR G N+L AT V +EG+ + C+ VI ++
Sbjct: 419 KPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYE 478
Query: 501 LPKTVSSYIQSRGRARQHNSQFILMLERSER 531
V IQ+RGR R +S+ L+ ++
Sbjct: 479 YVGNVIKMIQTRGRGRARDSKCFLLTSSADV 509
|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* Length = 556 | Back alignment and structure |
|---|
Score = 326 bits (835), Expect = 6e-98
Identities = 119/509 (23%), Positives = 223/509 (43%), Gaps = 23/509 (4%)
Query: 43 NFIPRIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAP 101
R YQ+++ + A +N + TG+GKT +++++ + Q + + K ++FLA
Sbjct: 5 TKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAK-VVFLAT 63
Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
V + QQ +V + H + + G G + + + +K I +D++V+TPQIL+++
Sbjct: 64 KVPVYEQQKNVFKHHFERQGYSVQGISG-ENFSNVSVEKVIEDSDIIVVTPQILVNSFED 122
Query: 162 AFL-SLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK----PKVFGMTASPVVRKGV 216
L SL I ++ DECH+ TGNHPY +M + + N P++ G+TAS
Sbjct: 123 GTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVG-VGNA 181
Query: 217 SSAMDCEGQISELESTLDSQVFTI--EDKTEMEVFVPSAKESCRFYDQSKF-CGSDLKGK 273
+ + I L S LD Q + E+ E++ F+ + R + + +
Sbjct: 182 KNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISN 241
Query: 274 LEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAV 333
L ++ + N KD ++ ++ ++L D+ A+
Sbjct: 242 LMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRAL 301
Query: 334 KICLEKVLKAQEECEIYRQSSL-----QCKYFLEEVLHVIGSALP--LADKIFLDFGFDY 386
IC E + K + I + + F V + + L L K
Sbjct: 302 FICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELI 361
Query: 387 SKAVDLGYISTKLHELLQ-LFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTV 445
+ + D + KL EL+ L ++ + Q ++F + +++ +++ P L ++
Sbjct: 362 ALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKP 421
Query: 446 AYLTG--STTSVDALTPKVQKEVLESFRGGKVN-LLFATDVIEEGMHVPNCSYVIRFDLP 502
L G +T QK VL++F+ K N LL AT V +EG+ + C+ V+ ++
Sbjct: 422 GVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYS 481
Query: 503 KTVSSYIQSRGRARQHNSQFILMLERSER 531
V+ IQ RGR R S+ IL+ ++E
Sbjct: 482 GNVTKMIQVRGRGRAAGSKCILVTSKTEV 510
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494 | Back alignment and structure |
|---|
Score = 316 bits (811), Expect = 2e-95
Identities = 121/494 (24%), Positives = 199/494 (40%), Gaps = 30/494 (6%)
Query: 44 FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTV 103
PRIYQ ++ K N + VL TG GKT+IA+M+ + + ++ LAPT
Sbjct: 8 IQPRIYQEVIYAKCKETNCLIVLPTGLGKTLIAMMIAEYRLT-----KYGGKVLMLAPTK 62
Query: 104 HLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAF 163
LV Q + R + E+ G + K + V+V TPQ + + L
Sbjct: 63 PLVLQHAESFRRLFNLPPEKIVALTGEKSPEE--RSKAWARAKVIVATPQTIENDLLAGR 120
Query: 164 LSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCE 223
+SL+ V IV DE H A GN+ Y I +E+ ++ P V G+TASP
Sbjct: 121 ISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQA-KNPLVIGLTASPGSTPE-------- 171
Query: 224 GQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDA 283
+I E+ + L + IE ++E V + RF K ++
Sbjct: 172 -KIMEVINNLGIE--HIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRD 228
Query: 284 SLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKA 343
+L L + L D K + + + ++ +L + Y A+ + K+ A
Sbjct: 229 ALKPLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMAL---KLHHA 285
Query: 344 QEECEIYRQSSLQ--CKYFLEEVLHVIGSALP--LADKIFLDFGFDYSKAVDLGYISTKL 399
E E S+L+ K EE A +DK +A ++G K+
Sbjct: 286 IELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKM 345
Query: 400 HELLQLFLS-FGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDAL 458
+L ++ + I+F AK + + K V S + L
Sbjct: 346 DKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQ--ASKENDRGL 403
Query: 459 TPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR-ARQ 517
+ + QK +L+ F G+ N+L AT V EEG+ VP V+ ++ + IQ RGR R
Sbjct: 404 SQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRH 463
Query: 518 HNSQFILMLERSER 531
+ I+++ + R
Sbjct: 464 MPGRVIILMAKGTR 477
|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Length = 696 | Back alignment and structure |
|---|
Score = 312 bits (800), Expect = 1e-91
Identities = 135/622 (21%), Positives = 240/622 (38%), Gaps = 60/622 (9%)
Query: 43 NFIPRIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAP 101
F PR YQL++ A K +NTI TG GKT +++++ + + K ++F A
Sbjct: 11 PFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGK-VVFFAN 69
Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
+ + Q V + + G G ++ ++ + ND++++TPQIL++ L+K
Sbjct: 70 QIPVYEQNKSVFSKYFERHGYRVTGISG-ATAENVPVEQIVENNDIIILTPQILVNNLKK 128
Query: 162 AFL-SLDIVCFIVIDECHHATGNHPYTKIMKEFYHK-----SDNKPKVFGMTASPVVRKG 215
+ SL I ++ DECH+ + HPY IM + + S P+V G+TAS
Sbjct: 129 GTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVG-VGD 187
Query: 216 VSSAMDCEGQISELESTLDSQVFTI--EDKTEMEVFVPSAKESCRFYDQS-----KFCGS 268
+ + I +L ++LD+ V + E+E V ++ R + K+ +
Sbjct: 188 AKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIA 247
Query: 269 DLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLIC 328
L E + L L Q + + + Q + ++ +E +
Sbjct: 248 QLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICK 307
Query: 329 AYEAVKICLEKVLKAQEECEIYRQSSLQ--CKYFLEEVLHVIGSALP--LADKIFLDFGF 384
A L K A E R K F V + L +
Sbjct: 308 ALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQE 367
Query: 385 DYSKAVDLGYISTKLHELLQLFLS-FGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHL 443
S + D + KL +L + + + + + I+FV+ ++ +++ P L+ L
Sbjct: 368 LESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFL 427
Query: 444 TVAYLTG--STTSVDALTPKVQKEVLESFRG-GKVNLLFATDVIEEGMHVPNCSYVIRFD 500
LTG T +T QK +L++F+ G N+L AT V +EG+ + C+ VI ++
Sbjct: 428 KPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYE 487
Query: 501 LPKTVSSYIQSRGRARQHNSQFILMLERSERSVTDTA--------------LSRDPEACF 546
V IQ+RGR R S+ L+ + + L EA F
Sbjct: 488 YVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVF 547
Query: 547 LKACTYVKTKSYIV---ESTGASVTTDSSVNLIHRYCEML----------PSDKYYTPKP 593
+ +++T + + V + L+ R C+ L Y
Sbjct: 548 REKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEDCHYTVLGD 607
Query: 594 IFKYKSAEEAYECELTLPSNAP 615
FK EC ++ P P
Sbjct: 608 AFK--------ECFVSRPHPKP 621
|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Length = 797 | Back alignment and structure |
|---|
Score = 314 bits (805), Expect = 3e-91
Identities = 120/539 (22%), Positives = 227/539 (42%), Gaps = 25/539 (4%)
Query: 15 VHSPNPPDMGSSGHDHAVDGPSSST--NSINFIPRIYQLKVFEVA-KRRNTIAVLETGAG 71
PD S + + R YQ+++ + A +N + TG+G
Sbjct: 216 YSEEAEPDDNLSENLGSAAEGIGKPPPVYETKKARSYQIELAQPAINGKNALICAPTGSG 275
Query: 72 KTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVD 131
KT +++++ + Q + + K ++FLA V + QQ +V + H + + G G +
Sbjct: 276 KTFVSILICEHHFQNMPAGRKAK-VVFLATKVPVYEQQKNVFKHHFERQGYSVQGISG-E 333
Query: 132 EWDSQCWQKEINKNDVLVMTPQILLDAL-RKAFLSLDIVCFIVIDECHHATGNHPYTKIM 190
+ + +K I +D++V+TPQIL+++ SL I ++ DECH+ TGNHPY +M
Sbjct: 334 NFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLM 393
Query: 191 KEFYHKSDNK----PKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTI--EDKT 244
+ + N P++ G+TAS + + I L S LD Q + E+
Sbjct: 394 TRYLEQKFNSASQLPQILGLTASVG-VGNAKNIEETIEHICSLCSYLDIQAISTVRENIQ 452
Query: 245 EMEVFVPSAKESCRFYDQSKFCG-SDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKH 303
E++ F+ + R + + + L ++ + N KD ++
Sbjct: 453 ELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQN 512
Query: 304 KTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYR-QSSLQCKYFLE 362
++ ++L D+ A+ IC E + K + I + +L
Sbjct: 513 YEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARIIDALSYLT 572
Query: 363 EVLHVIGSALPLADKIFLDFGFD------YSKAVDLGYISTKLHELLQ-LFLSFGKSTQV 415
E + + + L F + + D + KL EL+ L ++ + Q
Sbjct: 573 EFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQT 632
Query: 416 LCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTG--STTSVDALTPKVQKEVLESFRGG 473
++F + +++ +++ P L ++ L G +T QK VL++F+
Sbjct: 633 RTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTS 692
Query: 474 KVN-LLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERSER 531
K N LL AT V +EG+ + C+ V+ ++ V+ IQ RGR R S+ IL+ ++E
Sbjct: 693 KDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGRGRAAGSKCILVTSKTEV 751
|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} Length = 936 | Back alignment and structure |
|---|
Score = 308 bits (789), Expect = 5e-88
Identities = 129/612 (21%), Positives = 245/612 (40%), Gaps = 43/612 (7%)
Query: 15 VHSPNPPDMGSSGHDHAVDGPSSST--NSINFIPRIYQLKVFEVA-KRRNTIAVLETGAG 71
PD S + + R YQ+++ + A +N + TG+G
Sbjct: 216 YSEEAEPDDNLSENLGSAAEGIGKPPPVYETKKARSYQIELAQPAINGKNALICAPTGSG 275
Query: 72 KTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVD 131
KT +++++ + Q + + K ++FLA V + QQ +V + H + + G G +
Sbjct: 276 KTFVSILICEHHFQNMPAGRKAK-VVFLATKVPVYEQQKNVFKHHFERQGYSVQGISG-E 333
Query: 132 EWDSQCWQKEINKNDVLVMTPQILLDALRKAFL-SLDIVCFIVIDECHHATGNHPYTKIM 190
+ + +K I +D++V+TPQIL+++ L SL I ++ DECH+ TGNHPY +M
Sbjct: 334 NFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLM 393
Query: 191 KEFYHK----SDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTI--EDKT 244
+ + + P++ G+TAS V + + I L S LD Q + E+
Sbjct: 394 TRYLEQKFNSASQLPQILGLTASVGVGN-AKNIEETIEHICSLCSYLDIQAISTVRENIQ 452
Query: 245 EMEVFVPSAKESCRFYDQSKF-CGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKH 303
E++ F+ + R + + + L +++ + N KD ++
Sbjct: 453 ELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQN 512
Query: 304 KTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSL-----QCK 358
++ ++L D+ A+ IC E + K + I + +
Sbjct: 513 YEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARIIDALSYLT 572
Query: 359 YFLEEVLHVIGSALP--LADKIFLDFGFDYSKAVDLGYISTKLHELLQ-LFLSFGKSTQV 415
F V + + L L K + + D + KL EL+ L ++ + Q
Sbjct: 573 EFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQT 632
Query: 416 LCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTG--STTSVDALTPKVQKEVLESFRGG 473
++F + +++ +++ P L ++ L G +T QK VL++F+
Sbjct: 633 RTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTS 692
Query: 474 KVN-LLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERSERS 532
K N LL AT V +EG+ + C+ V+ ++ V+ IQ RGR R S+ IL+ ++E
Sbjct: 693 KDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGRGRAAGSKCILVTSKTEVV 752
Query: 533 VTDTALSR---------------DPEACFLKACTYVKTKSYIVESTGASVT---TDSSVN 574
+ D E K + + +S + + N
Sbjct: 753 ENEKCNRYKEEMMNKAVEKIQKWDEETFAKKIHNLQMKERVLRDSRRKEIKPKVVEGQKN 812
Query: 575 LIHRYCEMLPSD 586
L+ C+
Sbjct: 813 LLCGKCKAYACS 824
|
| >3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} Length = 216 | Back alignment and structure |
|---|
Score = 213 bits (545), Expect = 2e-63
Identities = 55/209 (26%), Positives = 84/209 (40%), Gaps = 23/209 (11%)
Query: 21 PDMGSSGHDHAVDGPSSSTNSINFIPRIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVML 79
MGS + V +S R YQ++V + A + +N I L TG+GKT +AV +
Sbjct: 11 GTMGSDSDEENVAARASPEP--ELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYI 68
Query: 80 IKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQ 139
KD K +I L V LV Q + + G G D +
Sbjct: 69 AKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSG-DTQLKISFP 127
Query: 140 KEINKNDVLVMTPQILLDAL------RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEF 193
+ + D+++ T QIL ++L A + L I+IDECHH Y IM+ +
Sbjct: 128 EVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHY 187
Query: 194 YHKSDNK-------------PKVFGMTAS 209
+ P++ G+TAS
Sbjct: 188 LMQKLKNNRLKKENKPVIPLPQILGLTAS 216
|
| >2kou_A Dicer-like protein 4; ATP-binding, endonuclease, helicase, hydrolase, nuclease, nucleotide-binding, nucleus, RNA- binding; NMR {Arabidopsis thaliana} Length = 102 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 2e-34
Identities = 35/97 (36%), Positives = 59/97 (60%), Gaps = 2/97 (2%)
Query: 567 VTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEE--AYECELTLPSNAPFQTIVGPTS 624
++ SS++++++YC LP D+++ PKP F++K +E C +TLP+NAP I
Sbjct: 1 ISGGSSISMMYKYCSRLPHDEFFQPKPEFQFKPVDEFGGTICRITLPANAPISEIESSLL 60
Query: 625 RNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSE 661
+ +K+ CL+A +LH +G LND LLP ++ E
Sbjct: 61 PSTEAAKKDACLKAVHELHNLGVLNDFLLPDSKDEIE 97
|
| >3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A Length = 265 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 3e-31
Identities = 59/261 (22%), Positives = 103/261 (39%), Gaps = 72/261 (27%)
Query: 1231 RSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQ-----------EF---------- 1269
++ I+ + E KI Y F K L +A THAS EF
Sbjct: 6 KTLNHLISGFETFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLI 65
Query: 1270 --YCYQ------------------------------NLYKHLQHCSTLLLSQITEYVKS- 1296
+ Y+ + +K+ + S L I ++VK
Sbjct: 66 TKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQ 125
Query: 1297 ------------FPKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKP 1344
+ E + ++ PKA+GD+ ES+ GA+ +D+ ++L+ VW+++ P
Sbjct: 126 LEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYP 185
Query: 1345 ILSPIVTPDKLELP--PLRELIELCDSLGYFVKENCTLKGEMVHAELRLQLKDVLLVGEG 1402
++ P++ +P P+REL+E+ F T G+ V + + K G G
Sbjct: 186 MMQPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDGK-VRVTVEVVGK-GKFKGVG 243
Query: 1403 QERSRKAAKGKAASQLLKKLE 1423
RS + AK AA + L+ L+
Sbjct: 244 --RSYRIAKSAAARRALRSLK 262
|
| >3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A Length = 265 | Back alignment and structure |
|---|
Score = 91.7 bits (228), Expect = 2e-20
Identities = 36/190 (18%), Positives = 64/190 (33%), Gaps = 21/190 (11%)
Query: 1015 PSVMQRLESLMLA-SQLREEINCHSRNFHIPSSLILEALT---TLGCCESFSMERLELLG 1070
P + L L+ ++IN +N + +L+A T + +RLE LG
Sbjct: 2 PDAEKTLNHLISGFETFEKKINYRFKN----KAYLLQAFTHASYHYNTITDCYQRLEFLG 57
Query: 1071 DSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRW 1130
D++L Y ++ HL+ + G L+ RS V N+ L Y +
Sbjct: 58 DAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFK--------- 108
Query: 1131 VAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEAL 1190
+L + + + + K + D E+L
Sbjct: 109 AVSPELFHVIDDFVKFQLEKNEMQGMDSELRRS----EEDEEKEEDIEVPKAMGDIFESL 164
Query: 1191 IGAYYVGGGL 1200
GA Y+ G+
Sbjct: 165 AGAIYMDSGM 174
|
| >2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A Length = 756 | Back alignment and structure |
|---|
Score = 115 bits (289), Expect = 5e-26
Identities = 51/270 (18%), Positives = 98/270 (36%), Gaps = 38/270 (14%)
Query: 879 DVIHLANGSVDAKN----LKDMVVLAIH-TGRIYSIVEIVNNSSAESPFDGNTDDDSKTF 933
D L++ D L +V + +Y ++ I + ++ S F ++S T+
Sbjct: 138 DAKRLSDEYTDYSTLSASLHGRMVATPEISWSLYVVLGIDSTQTSLSYF--TRANESITY 195
Query: 934 VNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHM 993
+ Y++ + I L PL+ + + + + + P++ +
Sbjct: 196 MRYYATAHNIHLRAADLPLVAAVRLDDLKDHQIPAPGSW----------DDLAPKLR-FL 244
Query: 994 PPELLVRVDVPISVVK--SLYLLPSVMQRLESL-MLASQLREEINCHSR-----NFHIPS 1045
PPEL + + +++ +L LP + + + + L + R F I +
Sbjct: 245 PPELCLLLPDEFDLIRVQALQFLPEIAKHICDIQNTICALDKSFPDCGRIGGERYFAITA 304
Query: 1046 SLILE------------ALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQ 1093
L L+ G + +RLELLGD+VL + V+ L +P G
Sbjct: 305 GLRLDQGRGRGLAGWRTPFGPFGVSHTDVFQRLELLGDAVLGFIVTARLLCLFPDASVGT 364
Query: 1094 LSARRSWAVCNSTLHKLGTDRKLQGYIRDS 1123
L + V N L+ L L S
Sbjct: 365 LVELKMELVRNEALNYLVQTLGLPQLAEFS 394
|
| >2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A Length = 756 | Back alignment and structure |
|---|
Score = 81.5 bits (201), Expect = 1e-15
Identities = 36/181 (19%), Positives = 56/181 (30%), Gaps = 55/181 (30%)
Query: 1025 MLASQLREEINCHSRNFHIPS--SLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHL 1082
+ A + + + IP L+ ALT ++LELLGD+ LK +++ HL
Sbjct: 613 IAAQTVSRSLAVPIPSGTIPFLIRLLQIALT------PHVYQKLELLGDAFLKCSLALHL 666
Query: 1083 FLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVP 1142
+P EG L+ R A NS L +L ++ +
Sbjct: 667 HALHPTLTEGALTRMRQSAETNSVLGRLT--KRFPSVVS--------------------- 703
Query: 1143 CECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIA 1202
SK D EA++ A + G A
Sbjct: 704 ------------------------EVIIESHPKIQPDSKVYGDTFEAILAAILLACGEEA 739
Query: 1203 A 1203
A
Sbjct: 740 A 740
|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Length = 472 | Back alignment and structure |
|---|
Score = 89.5 bits (222), Expect = 2e-18
Identities = 43/232 (18%), Positives = 75/232 (32%), Gaps = 41/232 (17%)
Query: 29 DHAVDGPSSSTNSINFIPRIYQLKVFEVAKRRNT-IAVLETGAGKTMIAVMLIKDIAQAI 87
D+A D + R YQ K E VL TG+GKT +A+ I ++
Sbjct: 77 DNAADPIPTPYFDAEISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL---- 132
Query: 88 KSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDV 147
+ + PT+ L Q + + + + V E+ G + +
Sbjct: 133 -----STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSG-------------RIKELKPL 174
Query: 148 LVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMT 207
V T K ++ DE HH Y +I + P G+T
Sbjct: 175 TVSTYDSAYVNAEKLGNRFM---LLIFDEVHHLPAES-YVQIAQMS-----IAPFRLGLT 225
Query: 208 ASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRF 259
A+ R+ +G+ L+ + +VF + + + F
Sbjct: 226 ATF-ERE--------DGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIF 268
|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Length = 472 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 1e-05
Identities = 35/221 (15%), Positives = 73/221 (33%), Gaps = 30/221 (13%)
Query: 305 TLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLK-AQEECEIYRQSSLQCKYFLEE 363
+ L + ++ L L + A + A++E Y + K FL
Sbjct: 233 GRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRA 292
Query: 364 VLHVIGSALPLADKIFLDFGFDYSKAVDLGYI---------STKLHELLQLFLSFGKSTQ 414
+ A + + + + K+ +L ++ K
Sbjct: 293 RGITLRRAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKD-- 350
Query: 415 VLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGK 474
IIF + + + +T T+ + ++E+LE FR G+
Sbjct: 351 -KIIIFTRHNELVYRISK---------VFLIPAITHRTSR------EEREEILEGFRTGR 394
Query: 475 VNLLFATDVIEEGMHVPNCSYVIRFDLP-KTVSSYIQSRGR 514
+ ++ V++EG+ VP+ + + + YIQ GR
Sbjct: 395 FRAIVSSQVLDEGIDVPDANVGV-IMSGSGSAREYIQRLGR 434
|
| >2xfm_A MIWI, PIWI-like protein 1; RNA-protein complex, differentiation, RNA interference; HET: OMU; NMR {Mus musculus} Length = 150 | Back alignment and structure |
|---|
Score = 74.7 bits (183), Expect = 1e-15
Identities = 18/130 (13%), Positives = 42/130 (32%), Gaps = 21/130 (16%)
Query: 891 KNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQ 950
K L ++VL + + Y + +I + + +S F D +F+ Y+ ++Y + Q
Sbjct: 27 KELIGLIVLTKYNNKTYRVDDIDWDQNPKSTFKKA-DGSEVSFLEYYRKQYNQEITDLKQ 85
Query: 951 PLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKS 1010
P+L + + + PEL + +
Sbjct: 86 PVLV--------------------SQPKRRRGPGGTLPGPAMLIPELCYLTGLTDKMRND 125
Query: 1011 LYLLPSVMQR 1020
++ +
Sbjct: 126 FNVMKDLAVH 135
|
| >2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 Length = 237 | Back alignment and structure |
|---|
Score = 76.3 bits (188), Expect = 3e-15
Identities = 37/187 (19%), Positives = 61/187 (32%), Gaps = 33/187 (17%)
Query: 29 DHAVDGPSSSTNSINFIPRIYQLKVFEVAKRRNT-IAVLETGAGKTMIAVMLIKDIAQAI 87
D+A D + R YQ K E VL TG+GKT +A+ I ++
Sbjct: 77 DNAADPIPTPYFDAEISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL---- 132
Query: 88 KSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDV 147
+ + PT+ L Q + + + + V E+ G + +
Sbjct: 133 -----STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSG-------------RIKELKPL 174
Query: 148 LVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMT 207
V T K ++ DE HH Y +I + G+T
Sbjct: 175 TVSTYDSAYVNAEKLGNRFM---LLIFDEVHHLPAES-YVQIAQMSIAPF-----RLGLT 225
Query: 208 ASPVVRK 214
A+ R+
Sbjct: 226 ATF-ERE 231
|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} Length = 715 | Back alignment and structure |
|---|
Score = 79.0 bits (195), Expect = 8e-15
Identities = 31/133 (23%), Positives = 53/133 (39%), Gaps = 16/133 (12%)
Query: 50 QLKVFEVA--KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVH 107
Q + + + + TG+GKT+IA M I + NG K I++ P L +
Sbjct: 35 QTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGI---ISFLLKNGGK--AIYVTPLRALTN 89
Query: 108 QQYDVIRV--HTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLS 165
++Y + F+V G D + D+++ T + L R
Sbjct: 90 EKYLTFKDWELIGFKVAMTSG-------DYDTDDAWLKNYDIIITTYEKLDSLWRHRPEW 142
Query: 166 LDIVCFIVIDECH 178
L+ V + V+DE H
Sbjct: 143 LNEVNYFVLDELH 155
|
| >3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora} Length = 341 | Back alignment and structure |
|---|
Score = 76.0 bits (187), Expect = 1e-14
Identities = 37/197 (18%), Positives = 53/197 (26%), Gaps = 65/197 (32%)
Query: 1064 ERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDS 1123
ERLE LGDS L VS ++ +P +EG LS + V N+ L T ++
Sbjct: 130 ERLEFLGDSWLGALVSYIVYTRFPSANEGMLSQMKESIVNNNNLFDWSTKLNFTKRLQ-- 187
Query: 1124 AFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDM-GHRWMGSKT 1182
+ SK
Sbjct: 188 -------------------------------------------GNIATPTRVVKDKMSKR 204
Query: 1183 IADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKD 1242
ADC EA IGA + L + +WL ++ +
Sbjct: 205 YADCVEAYIGALVIDRFGTEFLDIKEWL-------------------EELSEKKLAKSSQ 245
Query: 1243 IESKIGYEFTVKFLLQE 1259
+ K K L E
Sbjct: 246 MVIKEPLNKNAKNELAE 262
|
| >3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora} Length = 341 | Back alignment and structure |
|---|
Score = 52.9 bits (127), Expect = 4e-07
Identities = 44/250 (17%), Positives = 76/250 (30%), Gaps = 67/250 (26%)
Query: 1238 NEIKDIESKIGY-EFTVKFLLQEAITHASVQEFYCYQNLYKHLQHCSTLLLS-------- 1288
+ D++ I Y + L A H S + N+ HL LS
Sbjct: 83 DSNTDVDMFIKYPVVYDENLENLAFMHKS------FPNMNAHLNDAQKTQLSNERLEFLG 136
Query: 1289 ------QITEYV-KSFPK-----------------------------------PGETTDS 1306
++ V FP T
Sbjct: 137 DSWLGALVSYIVYTRFPSANEGMLSQMKESIVNNNNLFDWSTKLNFTKRLQGNIATPTRV 196
Query: 1307 GPSMKAPKALGDLLESIVGAVLID-TKLNLDEVW----RIFKPILSPIVTPDKLELPPL- 1360
K K D +E+ +GA++ID ++ + + L+ E
Sbjct: 197 VKD-KMSKRYADCVEAYIGALVIDRFGTEFLDIKEWLEELSEKKLAKSSQMVIKEPLNKN 255
Query: 1361 --RELIELCDSLGYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQL 1418
EL EL K + EM + +++ D+LL E + S + A+ +AA ++
Sbjct: 256 AKNELAELLQINKLGHKLHYRKLTEMPPFRVEVKIGDILL-DEAEGNSIREAEHRAAMKV 314
Query: 1419 LKKLEVCEKR 1428
L+ E+ K
Sbjct: 315 LENDELLRKY 324
|
| >3qir_A PIWI-like protein 2; structural genomics consortium, SGC, PAZ domain, RNAI, RNA B RNA binding protein; 2.45A {Homo sapiens} PDB: 3o7x_A Length = 148 | Back alignment and structure |
|---|
Score = 71.6 bits (175), Expect = 2e-14
Identities = 29/142 (20%), Positives = 50/142 (35%), Gaps = 28/142 (19%)
Query: 891 KNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQ 950
K L +V+ + R Y I ++ N + + F + D TF+ Y+S+ YGI + Q
Sbjct: 26 KLLVGNIVITRYNNRTYRIDDVDWNKTPKDSFTMS-DGKEITFLEYYSKNYGITVKEEDQ 84
Query: 951 PLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKS 1010
PLL + S N + + + PEL +P + K
Sbjct: 85 PLLIHRPSERQDNHGMLLKG-------------------EILLLPELSFMTGIPEKMKKD 125
Query: 1011 LYLLPSVM--------QRLESL 1024
+ + Q +L
Sbjct: 126 FRAMKDLAQQINLSPKQHHSAL 147
|
| >1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1 Length = 252 | Back alignment and structure |
|---|
Score = 73.4 bits (181), Expect = 3e-14
Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 9/85 (10%)
Query: 1046 SLILEALT---------TLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSA 1096
L+ AL G + S E+LE LGD+VL+ V L+ YP+ G L+
Sbjct: 36 ELLFRALCHSSYANEQNQAGRKDVESNEKLEFLGDAVLELFVCEILYKKYPEAEVGDLAR 95
Query: 1097 RRSWAVCNSTLHKLGTDRKLQGYIR 1121
+S A L + L ++
Sbjct: 96 VKSAAASEEVLAMVSRKMNLGKFLF 120
|
| >1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1 Length = 252 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 3e-06
Identities = 36/252 (14%), Positives = 80/252 (31%), Gaps = 82/252 (32%)
Query: 1235 PRINEIKDIESKIGYEFTVKFLLQEAITHASVQEFYCYQNLYKHLQHCST---------- 1284
+++ + + G F + LL A+ H+S Y + + +
Sbjct: 16 SERKIVEEFQKETGINFKNEELLFRALCHSS----YANEQNQAGRKDVESNEKLEFLGDA 71
Query: 1285 -LLLSQITEYV-KSFPK-----------------------------------PGETTDSG 1307
L L + E + K +P+ GE G
Sbjct: 72 VLELF-VCEILYKKYPEAEVGDLARVKSAAASEEVLAMVSRKMNLGKFLFLGKGEEKTGG 130
Query: 1308 ---PSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLR--- 1361
S+ L D E+++ A+ +D +++ +F+ + +K+ +
Sbjct: 131 RDRDSI-----LADAFEALLAAIYLDQ--GYEKIKELFEQEFEFYI--EKIMKGEMLFDY 181
Query: 1362 --ELIELCDSLG-----YFVKENCTLKGEMVHA---ELRLQLKDVLLVGEGQERSRKAAK 1411
L E+ S Y + + + +++ + G+ R++K A+
Sbjct: 182 KTALQEIVQSEHKVPPEYILVRT---EKN-DGDRIFVVEVRVNGKTI-ATGKGRTKKEAE 236
Query: 1412 GKAASQLLKKLE 1423
+AA +KL
Sbjct: 237 KEAARIAYEKLL 248
|
| >3o2r_A Ribonuclease III; structural genomics, center for structural genomics of infec diseases, csgid, nuclease domain, ribonuclase III; HET: MLZ; 1.25A {Campylobacter jejuni subsp} PDB: 3o2r_B* Length = 170 | Back alignment and structure |
|---|
Score = 71.1 bits (175), Expect = 3e-14
Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 18/117 (15%)
Query: 1009 KSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSM----E 1064
++LY + M+ +E L + + ++ +L++ ALT +SF E
Sbjct: 16 ENLYFQSNAMKNIEKLE------QSLTYEFKD----KNLLIHALTH----KSFKKSYNNE 61
Query: 1065 RLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIR 1121
RLE LGD+VL V +LF + K EG LS R+ V + K+ L +I
Sbjct: 62 RLEFLGDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFIL 118
|
| >3rv1_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 1.98A {Vanderwaltozyma polyspora} Length = 246 | Back alignment and structure |
|---|
Score = 72.9 bits (179), Expect = 4e-14
Identities = 32/148 (21%), Positives = 45/148 (30%), Gaps = 46/148 (31%)
Query: 1064 ERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDS 1123
ERLE LGDS L VS ++ +P +EG LS + V N+ L T ++
Sbjct: 130 ERLEFLGDSWLGALVSYIVYTRFPSANEGMLSQMKESIVNNNNLFDWSTKLNFTKRLQ-- 187
Query: 1124 AFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDM-GHRWMGSKT 1182
+ SK
Sbjct: 188 -------------------------------------------GNIATPTRVVKDKMSKR 204
Query: 1183 IADCAEALIGAYYVGGGLIAALYMMKWL 1210
ADC +A IGA + L + +WL
Sbjct: 205 YADCVQAYIGALVIDRFGTEFLDIKEWL 232
|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* Length = 720 | Back alignment and structure |
|---|
Score = 74.9 bits (184), Expect = 1e-13
Identities = 28/133 (21%), Positives = 56/133 (42%), Gaps = 16/133 (12%)
Query: 50 QLKVFEVA--KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVH 107
Q + + + +N + + T +GKT+IA + + I + G K +++ P L
Sbjct: 28 QAEALKSGILEGKNALISIPTASGKTLIAEIAM---VHRILTQGGK--AVYIVPLKALAE 82
Query: 108 QQYDVIRVHTDFEVEEYYGAKGVDEW--DSQCWQKEINKNDVLVMTPQILLDALRKAFLS 165
+++ +F+ E G + V D + + K D+++ T + LR
Sbjct: 83 EKFQ------EFQDWEKIGLR-VAMATGDYDSKDEWLGKYDIIIATAEKFDSLLRHGSSW 135
Query: 166 LDIVCFIVIDECH 178
+ V +V DE H
Sbjct: 136 IKDVKILVADEIH 148
|
| >3o7v_X PIWI-like protein 1; PIWI, RNA silencing, PI-RNA, HIWI1, HILI, PAZ domain, RNA BI protein; HET: OMU; 2.10A {Homo sapiens} PDB: 2l5c_A 2l5d_A 3o3i_X 3o6e_X* Length = 124 | Back alignment and structure |
|---|
Score = 68.0 bits (166), Expect = 1e-13
Identities = 19/108 (17%), Positives = 38/108 (35%), Gaps = 21/108 (19%)
Query: 890 AKNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPG 949
+K L +VVL + + Y + +I + + +S F D +F+ Y+ ++Y +
Sbjct: 25 SKELIGLVVLTKYNNKTYRVDDIDWDQNPKSTFKKA-DGSEVSFLEYYRKQYNQEITDLK 83
Query: 950 QPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPEL 997
QP+L + + + PEL
Sbjct: 84 QPMLV--------------------SQPKRRRGPGGTLPGPAMLIPEL 111
|
| >3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp} Length = 248 | Back alignment and structure |
|---|
Score = 70.7 bits (174), Expect = 2e-13
Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 18/117 (15%)
Query: 1009 KSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSM----E 1064
++LY + M+ +E +L + + ++ +L++ ALT +SF E
Sbjct: 16 ENLYFQSNAMKNIE------KLEQSLTYEFKD----KNLLIHALTH----KSFKKSYNNE 61
Query: 1065 RLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIR 1121
RLE LGD+VL V +LF + K EG LS R+ V + K+ L +I
Sbjct: 62 RLEFLGDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFIL 118
|
| >2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A Length = 221 | Back alignment and structure |
|---|
Score = 69.9 bits (172), Expect = 3e-13
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
Query: 1046 SLILEALTTLGCCESFSM----ERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWA 1101
SL+ +ALT S+S E LE LGD+++ + + L P K EG LS +++
Sbjct: 19 SLLEKALTH----VSYSKKEHYETLEFLGDALVNFFIVDLLVQYSPNKREGFLSPLKAYL 74
Query: 1102 VCNSTLHKLGTDRKLQGYIR 1121
+ + L +L +IR
Sbjct: 75 ISEEFFNLLAQKLELHKFIR 94
|
| >2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A Length = 221 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 6e-04
Identities = 27/123 (21%), Positives = 56/123 (45%), Gaps = 18/123 (14%)
Query: 1313 PKALGDLLESIVGAVLIDTKLNLDE----VWRIFKPILSPIVTPDKLELPPLRELIELCD 1368
+GD+ E++ AV ID+ + + +++FK + + +++ L E+
Sbjct: 102 ETIIGDVFEALWAAVYIDSGRDANFTRELFYKLFKEDILSAIKEGRVKKDYKTILQEITQ 161
Query: 1369 SLG-----YFVKENCTLKGEMVHA---ELRLQLKDVLLVGEGQERSRKAAKGKAASQLLK 1420
Y + +G H + ++K+ +GEG +S+K A+ +AA +L+K
Sbjct: 162 KRWKERPEYRLISV---EGP-HHKKKFIVEAKIKEYRTLGEG--KSKKEAEQRAAEELIK 215
Query: 1421 KLE 1423
LE
Sbjct: 216 LLE 218
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 71.8 bits (175), Expect = 2e-12
Identities = 98/660 (14%), Positives = 178/660 (26%), Gaps = 201/660 (30%)
Query: 116 HTDFEV-EEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILL-----------DALRKAF 163
H DFE E Y K + + + DV M IL DA+
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL 65
Query: 164 LSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCE 223
+ + +++++F + + SP+ + +M
Sbjct: 66 RLFWTLL------------SKQ-EEMVQKFVEEVLRIN--YKFLMSPIKTEQRQPSMMTR 110
Query: 224 GQISELESTL-DSQVFT-----------------IEDKTEMEVFV-------PS--AKES 256
I + + D+QVF +E + V + + A +
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV 170
Query: 257 CRFYD-QSKFCGSDLKGKLEVSWSKF------DASLSKLQGSQLNCYKDMDDKHKTLRKQ 309
C Y Q K ++ W + L LQ +D +
Sbjct: 171 CLSYKVQCKMDF-------KIFWLNLKNCNSPETVLEMLQ----KLLYQIDPNWTSRSDH 219
Query: 310 LSDYHAKILYCLDELGLICAYEAVKICL--------EKVLKAQEECEIYRQSSLQCKYFL 361
S+ +I EL + + + CL K A L CK
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN---------LSCK--- 267
Query: 362 EEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLH--ELLQLFLSF-GKSTQVL-- 416
+L + + D + + + L + S L E+ L L + Q L
Sbjct: 268 --IL-LTTRFKQVTDFL----SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320
Query: 417 --CII--FVERIIAAKVVERFVKKVPFLTHLTVAYLTGS-TTSVDALTPKVQKEVLESFR 471
IIA + + + H+ LT +S++ L P +++ +
Sbjct: 321 EVLTTNPRRLSIIAESIRD-GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL- 378
Query: 472 GGKVNLLFATDVIEEGMHVPNCSYVI-----RFDLPKTVSSYIQSRGRARQHNSQFI--- 523
+F H+P + V + + + +
Sbjct: 379 -----SVFPPSA-----HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI 428
Query: 524 --LMLERSERSVTDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCE 581
+ LE + + AL R IV+ N+ +
Sbjct: 429 PSIYLELKVKLENEYALHRS-----------------IVD----------HYNIPKTFDS 461
Query: 582 ----MLPSDKYYTPKPIFKY-----KSAEEAYECEL------------------TLPSNA 614
D+Y + + K+ E L + NA
Sbjct: 462 DDLIPPYLDQY-----FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNA 516
Query: 615 PFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALND--HLLPSVEEPSENNLISKKNESL 672
+ T + K +C + K ++ +N LP +EE NLI K L
Sbjct: 517 S--GSILNTLQQLKFYKPYIC-DNDPKYERL--VNAILDFLPKIEE----NLICSKYTDL 567
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 70.7 bits (172), Expect = 4e-12
Identities = 84/564 (14%), Positives = 155/564 (27%), Gaps = 147/564 (26%)
Query: 3 SPLNSLKRSFGEVHSPNPPDMGSSGHDHAVDGPSSSTNSIN----------------FIP 46
+++ EV N + S PS T +
Sbjct: 74 KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ-PSMMTRMYIEQRDRLYNDNQVFAKYNVS 132
Query: 47 R---IYQLK--VFEVAKRRNTIAVLE--TGAGKTMIAVMLIKDIAQAIKSNGFKKLIIF- 98
R +L+ + E+ R +++ G+GKT +A+ + FK IF
Sbjct: 133 RLQPYLKLRQALLEL--RPAKNVLIDGVLGSGKTWVALDVCLSYKV-QCKMDFK---IFW 186
Query: 99 ------------LAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKND 146
L L++Q +D + + + + +N
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246
Query: 147 VLVM----TPQILLDALRKAFLSLDIVCFI--------VIDECHHATGNHPYTKIMKEFY 194
+LV+ + AF ++ C I V D AT H
Sbjct: 247 LLVLLNVQNAKAW-----NAF---NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL 298
Query: 195 HKSDNKP---KVFGMTAS--PVVRKGVS-------SAMDCEGQISELESTLD--SQVFTI 240
+ K K P + + I + +T D V
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAES-----IRDGLATWDNWKHVNCD 353
Query: 241 EDKTEMEVFV---PSAKESCRFYDQSKFCGSDLK---GKLEVSWSKFDAS-----LSKLQ 289
+ T +E + A+ F S F L + W S ++KL
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDRLSVF-PPSAHIPTILLSLIWFDVIKSDVMVVVNKLH 412
Query: 290 GSQLNCYKDMD-------DKHKTLRKQLSDY---HAKILYCLDELGLICAYEAVKICLEK 339
L K + L+ +L + H I+ D + + +
Sbjct: 413 KYSL-VEKQPKESTISIPSIYLELKVKLENEYALHRSIV---DHYNIPKTF-----DSDD 463
Query: 340 VLKAQEECEIYRQSSLQCKYFLEEVLHVIG---SALPLADK------IFLDFGFDYSKAV 390
++ + +YF H IG + ++ +FLDF F K
Sbjct: 464 LIPPYLD-----------QYFYS---H-IGHHLKNIEHPERMTLFRMVFLDFRFLEQKIR 508
Query: 391 DLGYISTKLHELLQLFLSFGKSTQVLCII--FVERIIAAKVVERFVKKVPFLTHLTVAYL 448
+L +C ER++ A + F+ K+ +L
Sbjct: 509 HDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNA--ILDFLPKIE--ENL---IC 561
Query: 449 TGSTTSVD-ALTPKVQKEVLESFR 471
+ T + AL + + E+ +
Sbjct: 562 SKYTDLLRIALMAEDEAIFEEAHK 585
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 70.3 bits (171), Expect = 4e-12
Identities = 91/622 (14%), Positives = 187/622 (30%), Gaps = 219/622 (35%)
Query: 297 KDMDDKH--KTLRKQLSDYHAKILYCLDE--------LGLICAY--EAVKICLEKVLKA- 343
+ D K + LS + + + + E V+ +E+VL+
Sbjct: 31 DNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN 90
Query: 344 --------QEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYI 395
+ E RQ S+ + ++E+ + A ++ S+ +
Sbjct: 91 YKFLMSPIKTEQ---RQPSMMTRMYIEQRDRLYNDNQVFAK-------YNVSRLQPYLKL 140
Query: 396 STKLHEL-----LQLF--LSFGKSTQVLCIIFVERIIAAKVV--ERFVKKVPFLTHLTVA 446
L EL + + L GK+ + A V + K+ F +
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGKT--WV---------ALDVCLSYKVQCKMDF----KIF 185
Query: 447 YLT-GSTTSVDALTPKVQK----------EVLESFRGGKVNLLFATDVIEEGMHV---PN 492
+L + S + + +QK + K+ + + + N
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245
Query: 493 CSYVIRFDL--PKTVSSY-IQSRGRARQHNSQFILMLERSERSVTDTALSRDPEACFLKA 549
C V+ ++ K +++ + + IL+ R + VTD FL A
Sbjct: 246 CLLVLL-NVQNAKAWNAFNLSCK----------ILLTTR-FKQVTD----------FLSA 283
Query: 550 CTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELT 609
T ++ ++T D +L+ +Y + P D
Sbjct: 284 ---ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD----------------------- 317
Query: 610 LPSNA----PFQ-TIVG-----PTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVE-- 657
LP P + +I+ + N K + C+KL + + S+
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDGLATWDNW-KHV----NCDKLTTI------IESSLNVL 366
Query: 658 EPSENNLISKKN-ESL---PGAGTTKRKELHGTTPIRALSGRWGEKCGVILHAYKFNFAC 713
EP+E +K + L P H P LS W + +
Sbjct: 367 EPAEY----RKMFDRLSVFP-------PSAH--IPTILLSLIWFDV--------IKSDVM 405
Query: 714 SIVTEIYSGFVLLIESELDNDVGNFELELYLVSKTVKATVSSSGQVH---LDADQMSKAK 770
+V +++ S ++ + + + +K + + +H +D + K
Sbjct: 406 VVVNKLHK------YSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTF 459
Query: 771 CFQEL--------FFN---------------GLFGKLFVKSKSSGSREF-FLK---RETN 803
+L F++ LF +F+ +F FL+ R +
Sbjct: 460 DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL--------DFRFLEQKIRHDS 511
Query: 804 SLWSPSYMYLLLPLEIVNTFGD 825
+ W+ I+NT
Sbjct: 512 TAWNA-------SGSILNTLQQ 526
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.8 bits (136), Expect = 5e-08
Identities = 66/537 (12%), Positives = 138/537 (25%), Gaps = 142/537 (26%)
Query: 878 KDVIHLANGSVDAKNLKDMVVLAIHTGRIYSIVEIV---NNSSAESPFDGNTDDD----- 929
KDV + + + + +++ + + + + +
Sbjct: 36 KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLM 95
Query: 930 -------------SKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVNFNDG----- 971
++ ++ Y + + RL+ L+
Sbjct: 96 SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI 155
Query: 972 ---GGSGKGSKSGMNTKKPQMHVHMPPEL----LVRVDVPISVVKSLYLL-----PSVMQ 1019
GSGK + ++ M ++ L + P +V++ L L P+
Sbjct: 156 DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215
Query: 1020 RLESLMLASQLREEINCHSRNF-----HIPSSLILEALTTLGCCESFSMERLELLGDSVL 1074
R + I R + L+L + +F+
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN------------ 263
Query: 1075 KYAVSCH-LFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWV-- 1131
+SC L T K+ LSA + + T +++ + +++
Sbjct: 264 ---LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL-------LKYLDC 313
Query: 1132 APGQLSLRPVPCE-CGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMG---------SK 1181
P L P E + + + + D W +
Sbjct: 314 RPQDL-----PREVLTTNPRRLSIIAESIR-----------DGLATWDNWKHVNCDKLTT 357
Query: 1182 TIADCAEAL----IGAYYVGGGL------I-AALYMMKWLGIDADLEVSLVDDCITRASL 1230
I L + + I L + W + + +V+ SL
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY-SL 416
Query: 1231 --RSYVPRINEIKDIESKIGY-EFTVKFLLQEAITHASVQEFY----CYQN--------- 1274
+ I I Y E VK L E H S+ + Y + +
Sbjct: 417 VEKQPKESTISIPSI-----YLELKVK-LENEYALHRSIVDHYNIPKTFDSDDLIPPYLD 470
Query: 1275 --LYKHL-QHCSTLLLSQITEYVKSFPK--------PGETTDSGPSMKAPKALGDLL 1320
Y H+ H L + E + F + + A ++ + L
Sbjct: 471 QYFYSHIGHH---LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTL 524
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.6 bits (120), Expect = 5e-06
Identities = 87/576 (15%), Positives = 168/576 (29%), Gaps = 187/576 (32%)
Query: 709 FNFACSIVTEIYSGFVLLIESELDNDVGNFELELYLVSKTVKATVSSSGQVHLDADQMSK 768
F S E+ FV E L + +L+S S + +Q +
Sbjct: 68 FWTLLSKQEEMVQKFV---EEVLRINYK------FLMSPIKTEQRQPSMMTRMYIEQRDR 118
Query: 769 AKCFQELFFNG--LFGKLFVKSKSSGSREFFLKRETNSLWSPSYMYLLLPLEIVNTFGDG 826
+N +F K V SR + +L L P + V G
Sbjct: 119 -------LYNDNQVFAKYNV------SRLQPYLKLRQALLE------LRPAKNVLIDGVL 159
Query: 827 ----SW-----------------RINWSGINPCASVVEFIKE-KSFLGAAQCNNNGGNSS 864
+W +I W + C S ++ + L N +
Sbjct: 160 GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219
Query: 865 PC----RTSPCKTGC--------HGKDVIHLANGSV-DAKNLKDM-----VVLAIHTGRI 906
R + + ++ L N V +AK ++L T R
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN--VQNAKAWNAFNLSCKILL---TTRF 274
Query: 907 YSIVEIVNNS-----SAESPFDGNTDDDSKT-FVNYFSEKYG-----IVLIHPGQPLLRL 955
+ + ++ + S + T D+ K+ + Y + ++ +P RL
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP----RRL 330
Query: 956 ----KQSHNPHNLLVNFNDGGGSGKGS--KSGMNTKKP-------------QMHVHMPPE 996
+ + N+ + +S +N +P H+P
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI 390
Query: 997 LLVRV------DVPISVV-----KSL---------YLLPSVMQRLESLMLASQLREEINC 1036
LL + + VV SL +PS+ L+ +L E
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV-----KLENEYAL 445
Query: 1037 HSR---NFHIPSSLILEALTT----------LGCCESFSMERLELLGDSVLKYAVSCHLF 1083
H +++IP + + L +G ++ +E + + +F
Sbjct: 446 HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG----HHLKNIEHPE----RMTLFRMVF 497
Query: 1084 LTY----PK-KHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSL 1138
L + K +H+ +W S L+ L + + YI D+ DP+
Sbjct: 498 LDFRFLEQKIRHDST-----AWNASGSILNTLQQLKFYKPYICDN--DPKY--------- 541
Query: 1139 RPVPCECGVDTLEVPLDGKFFTQ-DTKVVVGKPCDM 1173
E V+ + F + + ++ K D+
Sbjct: 542 -----ERLVNAIL-----DFLPKIEENLICSKYTDL 567
|
| >2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis} Length = 242 | Back alignment and structure |
|---|
Score = 68.0 bits (167), Expect = 2e-12
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 1064 ERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLG---TDRKLQGYI 1120
ERLE LGD+VL ++ LF +P + EG L+ R+ V L + L ++
Sbjct: 43 ERLEFLGDAVLGLTITDALFHRHPDRSEGDLAKLRASVVNTQALADVARRLCAEGLGVHV 102
Query: 1121 R 1121
Sbjct: 103 L 103
|
| >2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis} Length = 242 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 9e-05
Identities = 31/132 (23%), Positives = 51/132 (38%), Gaps = 23/132 (17%)
Query: 1316 LGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLR-----ELIELCDSL 1370
L D +ES++GA+ + +++ + + P++ D L EL +
Sbjct: 120 LADGMESLLGAIYLQH--GMEKAREVILRLFGPLL--DAAPTLGAGLDWKTSLQELTAAR 175
Query: 1371 G-----YFVKENCTLKGEMVHA---ELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKL 1422
G Y V G H + + D G G RS+K A+ KAA+ K L
Sbjct: 176 GLGAPSYLVTS----TGP-DHDKEFTAVVVVMDSEY-GSGVGRSKKEAEQKAAAAAWKAL 229
Query: 1423 EVCEKRISKGAS 1434
EV + + S
Sbjct: 230 EVLDNAMPGKTS 241
|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A Length = 702 | Back alignment and structure |
|---|
Score = 68.7 bits (168), Expect = 1e-11
Identities = 28/132 (21%), Positives = 55/132 (41%), Gaps = 16/132 (12%)
Query: 50 QLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQ 108
Q + E +N + + T AGKT++A M + + G K +++ P L +
Sbjct: 30 QAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAM---VREA-IKGGK--SLYVVPLRALAGE 83
Query: 109 QYDVIRVHTDFEVEEYYGAKGVDE--WDSQCWQKEINKNDVLVMTPQILLDALRKAFLSL 166
+Y+ F+ E G + + D + + + D++V T + +R +
Sbjct: 84 KYE------SFKKWEKIGLR-IGISTGDYESRDEHLGDCDIIVTTSEKADSLIRNRASWI 136
Query: 167 DIVCFIVIDECH 178
V +V+DE H
Sbjct: 137 KAVSCLVVDEIH 148
|
| >2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} Length = 185 | Back alignment and structure |
|---|
Score = 63.8 bits (156), Expect = 2e-11
Identities = 36/122 (29%), Positives = 54/122 (44%), Gaps = 22/122 (18%)
Query: 398 KLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSV-- 455
K LL L + GK + ++FVE A +E F+ + + TS+
Sbjct: 32 KRSFLLDLLNATGKDSLT--LVFVETKKGADSLEDFLYHEGY-----------ACTSIHG 78
Query: 456 DALTPKVQKE---VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSR 512
D + Q++ L FR GK +L AT V G+ + N +VI FDLP + Y+
Sbjct: 79 D----RSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRI 134
Query: 513 GR 514
GR
Sbjct: 135 GR 136
|
| >2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} Length = 191 | Back alignment and structure |
|---|
Score = 63.8 bits (156), Expect = 2e-11
Identities = 30/122 (24%), Positives = 51/122 (41%), Gaps = 27/122 (22%)
Query: 398 KLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSV-- 455
L E LQ T +IF E+ + ++ ++
Sbjct: 45 YLLECLQ-------KTPPPVLIFAEKKADVDAIHEYLLLKGV-----------EAVAIHG 86
Query: 456 DALTPKVQKE---VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSR 512
K Q+E +E+FR GK ++L ATDV +G+ P +VI +D+P+ + +Y+
Sbjct: 87 G----KDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRI 142
Query: 513 GR 514
GR
Sbjct: 143 GR 144
|
| >3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Length = 968 | Back alignment and structure |
|---|
Score = 67.8 bits (165), Expect = 2e-11
Identities = 79/502 (15%), Positives = 167/502 (33%), Gaps = 64/502 (12%)
Query: 33 DGPSSSTNSINFIPRIYQLK-VFEVAKRRNTIAVL--ETGAGKTMIAVMLIKDIAQAIKS 89
P S +QL +V +R +L E G GKT+ A M++ Q + S
Sbjct: 141 RMPYSGLRGQRTSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILH---QQLLS 197
Query: 90 NGFKKLIIFLAPTVHLVHQ-QYDVIRV-HTDFEVEEYYGAKGVDEWDSQCWQKEINKNDV 147
++++I + P L HQ +++R + F + + + E +
Sbjct: 198 GAAERVLI-IVPE-TLQHQWLVEMLRRFNLRFALFDDERYAEAQHDAYNPFDTE----QL 251
Query: 148 LVMT-PQILLDALRKAFLSL---DIVCFIVIDECHHATGN-HPYTKIMKEFYHKSDNKPK 202
++ + R L D++ V+DE HH + ++ + +++ P
Sbjct: 252 VICSLDFARRSKQRLEHLCEAEWDLL---VVDEAHHLVWSEDAPSREYQAIEQLAEHVPG 308
Query: 203 VFGMTASPVVRKGVSSAMDCEGQISE---LESTLDSQVFT--IEDKTEMEVFVPSAKESC 257
V +TA+P + + LD F + E + + P A
Sbjct: 309 VLLLTATPE-----------QLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVA 357
Query: 258 RFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYH--A 315
+K +D L + D + +D + L L D H +
Sbjct: 358 MLLAGNKL-SNDELNMLGEMIGEQDIEPLLQAANSD--SEDAQSARQELVSMLMDRHGTS 414
Query: 316 KILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLA 375
++L+ G+ + ++ L Q + I + + E+ + +
Sbjct: 415 RVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIY 474
Query: 376 DKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVK 435
+ D ++ L+ L+ +S +VL + + A +E+ ++
Sbjct: 475 QEFEGD-------NATWWNFDPRVEWLMGY-LTSHRSQKVL--VICAKAATALQLEQVLR 524
Query: 436 KVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFR--GGKVNLLFATDVIEEGMHVPNC 493
+ + A + ++ + F +L +++ EG +
Sbjct: 525 E---REGIRAAVFHEGMSIIE------RDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFA 575
Query: 494 SYVIRFDLPKTVSSYIQSRGRA 515
S+++ FDLP Q GR
Sbjct: 576 SHMVMFDLPFNPDLLEQRIGRL 597
|
| >3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} Length = 590 | Back alignment and structure |
|---|
Score = 64.0 bits (156), Expect = 3e-10
Identities = 58/289 (20%), Positives = 100/289 (34%), Gaps = 52/289 (17%)
Query: 46 PRIYQ-------LKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQA---IKSNGFKKL 95
PR YQ ++ K+R+ I + TG GKT++A + + A + K
Sbjct: 179 PRYYQQIAINRAVQSVLQGKKRSLI-TMATGTGKTVVAFQISWKLWSARWNRTGDYRKPR 237
Query: 96 IIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQIL 155
I+FLA LV D + G K V + + Q +
Sbjct: 238 ILFLADRNVLVDDPKDKTFTPFGDARHKIEGGKVVKSRE------------IYFAIYQSI 285
Query: 156 LDALRKAFLSLDIVC----FIVIDECHHATGNHP--YTKIMKEFYHKSDNKPKV-FGMTA 208
R+ L + I+IDECH + + +I++ F +P GMTA
Sbjct: 286 ASDERRPGLYKEFPQDFFDLIIIDECHRGSARDNSNWREILEYF------EPAFQIGMTA 339
Query: 209 SPVVRKGVSSAMDCEGQISE--LESTLDS------QVFTIEDKTEMEVFVPSAKESCRF- 259
+P+ + I L +D +V + + + + PS + RF
Sbjct: 340 TPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFG 399
Query: 260 --YDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTL 306
++ D + + ++ DA L + K D KT+
Sbjct: 400 REIPDGEYQTKDFERVI-ALKARTDAFAKHLT----DFMKRTDRFAKTI 443
|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} Length = 417 | Back alignment and structure |
|---|
Score = 61.8 bits (151), Expect = 9e-10
Identities = 37/122 (30%), Positives = 54/122 (44%), Gaps = 22/122 (18%)
Query: 398 KLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSV-- 455
K LL L + GK + L +FVE A +E F+ + + TS+
Sbjct: 262 KRSFLLDLLNATGKDSLTL--VFVETKKGADSLEDFLYHEGY-----------ACTSIHG 308
Query: 456 DALTPKVQKE---VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSR 512
D + Q++ L FR GK +L AT V G+ + N +VI FDLP + Y+
Sbjct: 309 D----RSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRI 364
Query: 513 GR 514
GR
Sbjct: 365 GR 366
|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} Length = 417 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 5e-04
Identities = 32/140 (22%), Positives = 63/140 (45%), Gaps = 24/140 (17%)
Query: 56 VAKRRNTIAVLETGAGKT------MIAVMLIKDIAQAIKSNGFKK---------LIIFLA 100
+ ++R+ +A +TG+GKT +++ + +A+++ + + LA
Sbjct: 49 IKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLA 108
Query: 101 PTVHLVHQQYDVIR---VHTDFEVEEYYGAKGVDEWDSQCWQKEINKN-DVLVMTPQILL 156
PT L Q Y+ R + YG G D Q +++ + +LV TP L+
Sbjct: 109 PTRELAVQIYEEARKFSYRSRVRPCVVYG--GADIGQ-QI--RDLERGCHLLVATPGRLV 163
Query: 157 DALRKAFLSLDIVCFIVIDE 176
D + + + LD ++V+DE
Sbjct: 164 DMMERGKIGLDFCKYLVLDE 183
|
| >1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 Length = 172 | Back alignment and structure |
|---|
Score = 56.4 bits (137), Expect = 4e-09
Identities = 22/126 (17%), Positives = 44/126 (34%), Gaps = 29/126 (23%)
Query: 398 KLHELLQLF--LSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHL------TVAYLT 449
K +L L L F +IFV + V++ L L +
Sbjct: 18 KNRKLFDLLDVLEFN-----QVVIFV----------KSVQRCIALAQLLVEQNFPAIAIH 62
Query: 450 GSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYI 509
+ + + + F+ + +L AT++ GM + + +D+P+ +Y+
Sbjct: 63 RG------MPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYL 116
Query: 510 QSRGRA 515
RA
Sbjct: 117 HRVARA 122
|
| >1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 Length = 165 | Back alignment and structure |
|---|
Score = 56.0 bits (136), Expect = 6e-09
Identities = 31/126 (24%), Positives = 49/126 (38%), Gaps = 29/126 (23%)
Query: 398 KLHELLQLF--LSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHL------TVAYLT 449
K L L+ +S +IF +KV LT TV+ +
Sbjct: 17 KYECLTDLYDSISVT-----QAVIFC----------NTRRKVEELTTKLRNDKFTVSAIY 61
Query: 450 GSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYI 509
L + + +++ FR G +L +TD++ G+ V S VI +DLP +YI
Sbjct: 62 SD------LPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYI 115
Query: 510 QSRGRA 515
GR
Sbjct: 116 HRIGRG 121
|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} Length = 434 | Back alignment and structure |
|---|
Score = 58.7 bits (143), Expect = 9e-09
Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 24/122 (19%)
Query: 398 KLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSV-- 455
K +L+++ T I+FVE A + F+ + F TTS+
Sbjct: 288 KRSKLIEILSEQADGT----IVFVETKRGADFLASFLSEKEF-----------PTTSIHG 332
Query: 456 DALTPKVQKE---VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSR 512
D ++Q + L F+ G + +L AT V G+ + N +VI +D+P + Y+
Sbjct: 333 D----RLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRI 388
Query: 513 GR 514
GR
Sbjct: 389 GR 390
|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} Length = 434 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 5e-05
Identities = 30/127 (23%), Positives = 61/127 (48%), Gaps = 11/127 (8%)
Query: 56 VAKRRNTIAVLETGAGKTM--IAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVI 113
++ R+ +A +TG+GKT + +L K + + + ++ ++PT L Q ++
Sbjct: 90 ISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEA 149
Query: 114 R---VHTDFEVEEYYGAKGVDEWDSQCWQKEINKN-DVLVMTPQILLDALRKAFLSLDIV 169
R + ++ YG G Q + I + V++ TP LLD + + F++ +
Sbjct: 150 RKFAFESYLKIGIVYG--GTSFRH-QN--ECITRGCHVVIATPGRLLDFVDRTFITFEDT 204
Query: 170 CFIVIDE 176
F+V+DE
Sbjct: 205 RFVVLDE 211
|
| >2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} Length = 170 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 6e-08
Identities = 33/123 (26%), Positives = 54/123 (43%), Gaps = 25/123 (20%)
Query: 401 ELLQLFLSFGKSTQVLCIIFVE-RIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALT 459
LL L ++T+ I+FV R ++ + + YL G
Sbjct: 19 ALLVHLLKQPEATRS--IVFVRKRERVHELANWLREA-----GINNCYLEGE-------- 63
Query: 460 PKVQK---EVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSR---- 512
VQ E ++ G+VN+L ATDV G+ +P+ S+V FD+P++ +Y+ R
Sbjct: 64 -MVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLH-RIGRT 121
Query: 513 GRA 515
RA
Sbjct: 122 ARA 124
|
| >1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23 Length = 282 | Back alignment and structure |
|---|
Score = 54.7 bits (130), Expect = 8e-08
Identities = 39/173 (22%), Positives = 66/173 (38%), Gaps = 18/173 (10%)
Query: 39 TNSINFIPRIY-QLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLII 97
+ + P Y + VFE R I L T AG+++I +L + + + I+
Sbjct: 107 SGNKRIEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGK-----IL 161
Query: 98 FLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLD 157
+ PT L Q D + F G ++ N V+V T Q ++
Sbjct: 162 IIVPTTALTTQMADDFVDYRLF-SHAMIKKIGGGASKDDKYK---NDAPVVVGTWQTVVK 217
Query: 158 ALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASP 210
++ F ++ DECH ATG + I+ +N FG++ S
Sbjct: 218 QPKEWFSQFGMMM---NDECHLATGKS-ISSIIS----GLNNCMFKFGLSGSL 262
|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* Length = 414 | Back alignment and structure |
|---|
Score = 55.5 bits (134), Expect = 9e-08
Identities = 27/135 (20%), Positives = 50/135 (37%), Gaps = 20/135 (14%)
Query: 45 IPRIYQLKVFEVAKRRNTIAVLETGAGKTM-IAVMLIKDIAQAIKSNGFKKLIIFLAPTV 103
RI + ++ V TG GKT + + G K + + PTV
Sbjct: 30 AKRI--------VQGKSFTMVAPTGVGKTTFGMMTALWLA-----RKGKKSAL--VFPTV 74
Query: 104 HLVHQQYDVIR--VHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
LV Q + ++ ++ +Y + +E + E + +LV + Q + K
Sbjct: 75 TLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK 134
Query: 162 AFLSLDIVCFIVIDE 176
LS F+ +D+
Sbjct: 135 --LSQKRFDFVFVDD 147
|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* Length = 414 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 3e-06
Identities = 30/125 (24%), Positives = 51/125 (40%), Gaps = 29/125 (23%)
Query: 398 KLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDA 457
KL ELL++F +IF + K + ++K+ F +V
Sbjct: 243 KLVELLEIF---RDGI----LIFAQTEEEGKELYEYLKRFKF--------------NVGE 281
Query: 458 LTPKVQKEVLESFRGGKVNLLFATDVIEE----GMHVPNC-SYVIRFDLPKT--VSSYIQ 510
+ ++ E F+ GK+N+L G+ +P YVI + P V +YIQ
Sbjct: 282 TWSE-FEKNFEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQ 340
Query: 511 SRGRA 515
+ GR+
Sbjct: 341 ASGRS 345
|
| >1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 Length = 253 | Back alignment and structure |
|---|
Score = 53.7 bits (130), Expect = 1e-07
Identities = 37/131 (28%), Positives = 61/131 (46%), Gaps = 15/131 (11%)
Query: 56 VAKRRNTIAVLETGAGKT------MIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQ 109
+ + R+ +A +TG+GKT +I ++ +D+ Q S + LAPT L Q
Sbjct: 57 ILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQI 116
Query: 110 YDVIR---VHTDFEVEEYYGAKGVDEWDSQCWQKEINKN-DVLVMTPQILLDALRKAFLS 165
+ ++T YG G D Q +E+ +LV TP L+D + K +S
Sbjct: 117 LSESQKFSLNTPLRSCVVYG--GADTHS-QI--REVQMGCHLLVATPGRLVDFIEKNKIS 171
Query: 166 LDIVCFIVIDE 176
L+ +IV+DE
Sbjct: 172 LEFCKYIVLDE 182
|
| >2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} Length = 175 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 2e-07
Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 19/123 (15%)
Query: 398 KLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDA 457
K L ++ G T IIF + + + ++ H V+ L+G
Sbjct: 21 KYQALCNIY---GSITIGQAIIFCQTR---RNAKWLTVEMIQDGH-QVSLLSG------E 67
Query: 458 LTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVS------SYIQS 511
LT + + +++ FR GK +L T+V G+ V + V+ FDLP +Y+
Sbjct: 68 LTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHR 127
Query: 512 RGR 514
GR
Sbjct: 128 IGR 130
|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} Length = 579 | Back alignment and structure |
|---|
Score = 54.4 bits (131), Expect = 2e-07
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 465 EVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR-AR 516
+++ F+ + +L TDV GM PN V++ +P +++YI GR AR
Sbjct: 332 SLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTAR 384
|
| >3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A Length = 212 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 3e-07
Identities = 19/49 (38%), Positives = 27/49 (55%)
Query: 466 VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514
VL +FR G+V +L ATDV G+ +P V+ + LP +Y GR
Sbjct: 73 VLGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGR 121
|
| >4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A Length = 861 | Back alignment and structure |
|---|
Score = 54.4 bits (130), Expect = 3e-07
Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 6/77 (7%)
Query: 891 KNLKDMVVLAIHTG---RIYSIVEIVNNSSAESPF---DGNTDDDSKTFVNYFSEKYGIV 944
K +K + V H G R Y + + ++ F + T YF +++ +V
Sbjct: 262 KEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQESGQTVECTVAQYFKDRHKLV 321
Query: 945 LIHPGQPLLRLKQSHNP 961
L +P P L++ Q
Sbjct: 322 LRYPHLPCLQVGQEQKH 338
|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* Length = 563 | Back alignment and structure |
|---|
Score = 53.3 bits (128), Expect = 5e-07
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 465 EVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR-AR 516
+++ F+ + +L TDV GM PN V++ +P +++YI GR AR
Sbjct: 383 SLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTAR 435
|
| >3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} Length = 300 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 1e-06
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 466 VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514
V+ +FR G+V +L ATDV G+ +P V+ + +P +Y GR
Sbjct: 70 VMGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGR 118
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 Length = 367 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 2e-06
Identities = 18/49 (36%), Positives = 29/49 (59%)
Query: 466 VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514
V+ F+ K+ +L ATDV+ G+ V + + VI + LP+ SY+ GR
Sbjct: 280 VIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGR 328
|
| >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A Length = 431 | Back alignment and structure |
|---|
Score = 51.0 bits (122), Expect = 3e-06
Identities = 37/211 (17%), Positives = 60/211 (28%), Gaps = 41/211 (19%)
Query: 58 KRRNTIAVLETGAGK-TMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVH 116
KR T+ L GAGK + L++ +A+K + LAPT RV
Sbjct: 1 KRELTVLDLHPGAGKTRRVLPQLVR---EAVKKRL---RTVILAPT-----------RVV 43
Query: 117 TDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL--SLDIVCFIVI 174
E+ E + + + V M K + ++
Sbjct: 44 AS-EMYEALRGEPIRYMTPAVQSERTGNEIVDFMCHSTF---TMKLLQGVRVPNYNLYIM 99
Query: 175 DECHHATGNH-PYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQ---ISELE 230
DE H ++ S MTA+P I + E
Sbjct: 100 DEAHFLDPASVAARGYIETR--VSMGDAGAIFMTATPPGT-----TEAFPPSNSPIIDEE 152
Query: 231 STLDSQVFTI------EDKTEMEVFVPSAKE 255
+ + + + E FV S K+
Sbjct: 153 TRIPDKAWNSGYEWITEFDGRTVWFVHSIKQ 183
|
| >2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} Length = 163 | Back alignment and structure |
|---|
Score = 47.9 bits (115), Expect = 3e-06
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 463 QKE---VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514
Q++ V+ F+ G+ L ATDV G+ + N S VI +DLP SY+ GR
Sbjct: 71 QEDRFDVMNEFKRGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGR 125
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A Length = 400 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 3e-06
Identities = 35/122 (28%), Positives = 49/122 (40%), Gaps = 21/122 (17%)
Query: 398 KLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDA 457
KLH L LF K IIF +V L +T S
Sbjct: 245 KLHCLNTLF---SKLQINQAIIFC----------NSTNRVELLAKK----ITDLGYSCYY 287
Query: 458 LTPKV-QKE---VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRG 513
++ Q+E V FR GKV L +D++ G+ + + VI FD PKT +Y+ G
Sbjct: 288 SHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIG 347
Query: 514 RA 515
R+
Sbjct: 348 RS 349
|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* Length = 394 | Back alignment and structure |
|---|
Score = 50.2 bits (121), Expect = 3e-06
Identities = 30/123 (24%), Positives = 48/123 (39%), Gaps = 25/123 (20%)
Query: 398 KLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTH------LTVAYLTGS 451
K L L+ + +IF +KV LT TV+ +
Sbjct: 246 KYECLTDLY---DSISVTQAVIFC----------NTRRKVEELTTKLRNDKFTVSAIYSD 292
Query: 452 TTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQS 511
L + + +++ FR G +L +TD++ G+ V S VI +DLP +YI
Sbjct: 293 ------LPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHR 346
Query: 512 RGR 514
GR
Sbjct: 347 IGR 349
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A Length = 391 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 3e-06
Identities = 28/124 (22%), Positives = 49/124 (39%), Gaps = 25/124 (20%)
Query: 398 KLHELLQLF--LSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSV 455
K +L L L F QV +IFV + V++ L L L
Sbjct: 237 KNRKLFDLLDVLEF---NQV--VIFV----------KSVQRCIALAQL----LVEQNFPA 277
Query: 456 DALTPKV-QKE---VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQS 511
A+ + Q+E + F+ + +L AT++ GM + + +D+P+ +Y+
Sbjct: 278 IAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHR 337
Query: 512 RGRA 515
RA
Sbjct: 338 VARA 341
|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A Length = 410 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 3e-06
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 463 QKE---VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514
QKE +++ FR G +L +TDV G+ VP S +I +DLP YI GR
Sbjct: 312 QKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGR 366
|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} Length = 414 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 4e-06
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 463 QKE---VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514
QKE ++ FR G +L TD++ G+ V S VI +DLP +YI GR
Sbjct: 316 QKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGR 370
|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} Length = 337 | Back alignment and structure |
|---|
Score = 49.4 bits (119), Expect = 5e-06
Identities = 18/49 (36%), Positives = 29/49 (59%)
Query: 466 VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514
+++FR G+ ++L TDV G+ +P VI FD P+ + +YI GR
Sbjct: 258 NIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGR 306
|
| >3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} Length = 245 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 1e-05
Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 14/128 (10%)
Query: 56 VAKRRNTIAVLETGAGKTMIAVML--IKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVI 113
+ R +A TG+GKT+ A + + + Q + GF+ LI ++PT L Q + +
Sbjct: 63 MLHGRELLASAPTGSGKTL-AFSIPILMQLKQP-ANKGFRALI--ISPTRELASQIHREL 118
Query: 114 R---VHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL--RKAFLSLDI 168
T F + + + K D+LV TP L+ L + L
Sbjct: 119 IKISEGTGFRIHMIHK--AAVAAKKFGPKSS-KKFDILVTTPNRLIYLLKQDPPGIDLAS 175
Query: 169 VCFIVIDE 176
V ++V+DE
Sbjct: 176 VEWLVVDE 183
|
| >4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora} Length = 1046 | Back alignment and structure |
|---|
Score = 48.5 bits (114), Expect = 2e-05
Identities = 13/71 (18%), Positives = 27/71 (38%)
Query: 891 KNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQ 950
++ K +V + + ++ S N + ++YF KY I L +P
Sbjct: 382 RSSKGIVGFTRESAVSMRFNVLESSLKKNSAPKPNEKPININTIDYFKRKYDITLKYPDM 441
Query: 951 PLLRLKQSHNP 961
L+ L ++
Sbjct: 442 KLVNLGGKNDV 452
|
| >3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} Length = 242 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 4e-05
Identities = 28/123 (22%), Positives = 52/123 (42%), Gaps = 11/123 (8%)
Query: 60 RNTIAVLETGAGKTM--IAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIR--- 114
+ + V +TG+GKT+ + ++ Q G + + LAPT L Q V
Sbjct: 67 LDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYC 126
Query: 115 VHTDFEVEEYYGAKGVDEWDSQCWQKEINKN-DVLVMTPQILLDALRKAFLSLDIVCFIV 173
+ YG G + Q +++ + ++ + TP L+D L +L ++V
Sbjct: 127 RACRLKSTCIYG--GAPKGP-QI--RDLERGVEICIATPGRLIDFLECGKTNLRRTTYLV 181
Query: 174 IDE 176
+DE
Sbjct: 182 LDE 184
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B Length = 412 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 7e-05
Identities = 30/108 (27%), Positives = 45/108 (41%), Gaps = 19/108 (17%)
Query: 398 KLHELLQLF--LSFGKSTQVLCIIFVE-RIIAAKVVERFVKKVPFLTHLTVAYLTGSTTS 454
K L L+ ++ +IF R A+ + K+ VA L+G
Sbjct: 253 KFQALCNLYGAITIA-----QAMIFCHTRKTASWLAAELSKE-----GHQVALLSG---- 298
Query: 455 VDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLP 502
+ + + V+E FR GK +L T+V G+ V S VI FDLP
Sbjct: 299 --EMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLP 344
|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* Length = 395 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 7e-05
Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 18/106 (16%)
Query: 416 LCIIFVE-RIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGK 474
IIFV + A + + + V+ L G L + + +++ FR G+
Sbjct: 245 SSIIFVATKKTANVLYGKLKSE-----GHEVSILHG------DLQTQERDRLIDDFREGR 293
Query: 475 VNLLFATDVIEEGMHVPNCSYVIRFDLPKTVS------SYIQSRGR 514
+L T+V+ G+ +P S V+ +DLP + +YI GR
Sbjct: 294 SKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGR 339
|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} Length = 479 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 8e-05
Identities = 29/107 (27%), Positives = 43/107 (40%), Gaps = 17/107 (15%)
Query: 398 KLHELLQLF--LSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSV 455
K L L+ ++ +IF K ++ H VA L+G
Sbjct: 320 KFQALCNLYGAITIA-----QAMIFCHTR---KTASWLAAELSKEGH-QVALLSG----- 365
Query: 456 DALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLP 502
+ + + V+E FR GK +L T+V G+ V S VI FDLP
Sbjct: 366 -EMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLP 411
|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* Length = 440 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 1e-04
Identities = 30/209 (14%), Positives = 66/209 (31%), Gaps = 35/209 (16%)
Query: 57 AKRRNTIAVLETGAGK-TMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL---VHQQYDV 112
K T+ GAGK ++ + A+ + + LAPT + + + +
Sbjct: 6 KKGMTTVLDFHPGAGKTRRFLPQILAECARR------RLRTLVLAPTRVVLSEMKEAFHG 59
Query: 113 IRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFI 172
+ V + + S + + M L + + + I
Sbjct: 60 LDVK--------FHTQAFSAHGSG-------REVIDAMCHATLTYRMLEP-TRVVNWEVI 103
Query: 173 VIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELEST 232
++DE H + N+ MTA+P G+I ++++
Sbjct: 104 IMDEAHFLDP-ASIAARGWAAHRARANESATILMTATPPGT--SDEFPHSNGEIEDVQTD 160
Query: 233 LDSQVFTI--EDKTEME----VFVPSAKE 255
+ S+ + + + F+PS +
Sbjct: 161 IPSEPWNTGHDWILADKRPTAWFLPSIRA 189
|
| >3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} Length = 228 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 1e-04
Identities = 33/125 (26%), Positives = 54/125 (43%), Gaps = 15/125 (12%)
Query: 60 RNTIAVLETGAGKTM--IAVMLIKDIAQAI---KSNGFKKLIIFLAPTVHLVHQQYDVIR 114
+ I V +TG GKT+ + I +Q I + NG L+ L PT L
Sbjct: 58 IDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLV--LTPTRELALHVEAECS 115
Query: 115 V--HTDFEVEEYYGAKGVDEWDSQCWQKEINKN-DVLVMTPQILLDALRKAFLSLDIVCF 171
+ + YG G + Q ++I+K D+++ TP L D ++L + +
Sbjct: 116 KYSYKGLKSICIYG--GRNRNG-QI--EDISKGVDIIIATPGRLNDLQMNNSVNLRSITY 170
Query: 172 IVIDE 176
+VIDE
Sbjct: 171 LVIDE 175
|
| >1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A Length = 224 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 2e-04
Identities = 27/120 (22%), Positives = 47/120 (39%), Gaps = 11/120 (9%)
Query: 60 RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRV---H 116
+ +A ++G GKT I Q I ++ + LAPT L Q V+ H
Sbjct: 52 HDVLAQAQSGTGKT--GTFSIA-ALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFH 108
Query: 117 TDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDE 176
D +V G E + + ++V TP + D +++ D + ++DE
Sbjct: 109 MDIKVHACIGGTSFVE---D--AEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDE 163
|
| >3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* Length = 237 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 4e-04
Identities = 31/122 (25%), Positives = 49/122 (40%), Gaps = 9/122 (7%)
Query: 58 KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRV-- 115
K + IA ++G GKT A I I Q ++ + + LAPT L Q VI
Sbjct: 66 KGYDVIAQAQSGTGKT--ATFAIS-ILQQLEIEFKETQALVLAPTRELAQQIQKVILALG 122
Query: 116 -HTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVI 174
+ G V + + + ++V TP + D L + +LS + V+
Sbjct: 123 DYMGATCHACIGGTNVRN---EMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVL 179
Query: 175 DE 176
DE
Sbjct: 180 DE 181
|
| >2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} Length = 1010 | Back alignment and structure |
|---|
Score = 44.0 bits (103), Expect = 4e-04
Identities = 31/112 (27%), Positives = 52/112 (46%), Gaps = 20/112 (17%)
Query: 68 TGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGA 127
T AGKT++A I AQ++K+ + +I+ +P L +Q+Y + +G
Sbjct: 110 TSAGKTVVAEYAI---AQSLKNK---QRVIYTSPIKALSNQKYR------ELL--AEFGD 155
Query: 128 KGVDEWDSQCWQKEINKN-DVLVMTPQILLDALRKAFLSLDIVCFIVIDECH 178
G+ D IN + LVMT +IL L + + V +++ DE H
Sbjct: 156 VGLMTGDIT-----INPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVH 202
|
| >3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} Length = 1108 | Back alignment and structure |
|---|
Score = 44.1 bits (103), Expect = 5e-04
Identities = 31/112 (27%), Positives = 52/112 (46%), Gaps = 20/112 (17%)
Query: 68 TGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGA 127
T AGKT++A I AQ++K+ + +I+ +P L +Q+Y + +G
Sbjct: 208 TSAGKTVVAEYAI---AQSLKNK---QRVIYTSPIKALSNQKYR------ELL--AEFGD 253
Query: 128 KGVDEWDSQCWQKEINKN-DVLVMTPQILLDALRKAFLSLDIVCFIVIDECH 178
G+ D IN + LVMT +IL L + + V +++ DE H
Sbjct: 254 VGLMTGDIT-----INPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVH 300
|
| >2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A Length = 451 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 5e-04
Identities = 42/216 (19%), Positives = 70/216 (32%), Gaps = 31/216 (14%)
Query: 48 IYQLKVFEVAKRRNTIAVLETGAGKT--MIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
Y++ K+R TI L GAGKT ++ ++ + + + ++ + LAPT
Sbjct: 8 DYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLRRLR-------TLILAPT--- 57
Query: 106 VHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLS 165
RV E+EE + + V +M L +
Sbjct: 58 --------RVVAA-EMEEALRGLPIRYQTPAVKSDHTGREIVDLMCHATFTTRLLSS-TR 107
Query: 166 LDIVCFIVIDECHHATGNH-PYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSS-----A 219
+ IV+DE H + + MTA+P
Sbjct: 108 VPNYNLIVMDEAHFTDPCSVAARGYISTRVEMGEAAAIF--MTATPPGSTDPFPQSNSPI 165
Query: 220 MDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKE 255
D E +I E S + + + + FVPS K
Sbjct: 166 EDIEREIPE-RSWNTGFDWITDYQGKTVWFVPSIKA 200
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1590 | ||||
| d1wp9a1 | 200 | c.37.1.19 (A:1-200) putative ATP-dependent RNA hel | 8e-18 | |
| d1wp9a2 | 286 | c.37.1.19 (A:201-486) putative ATP-dependent RNA h | 4e-17 | |
| d1rifa_ | 282 | c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 | 6e-11 | |
| d1a1va2 | 299 | c.37.1.14 (A:326-624) HCV helicase domain {Human h | 7e-10 | |
| d1si2a_ | 126 | b.34.14.1 (A:) Eukaryotic translation initiation f | 6e-09 | |
| d2fz4a1 | 206 | c.37.1.19 (A:24-229) DNA repair protein RAD25 {Arc | 7e-09 | |
| d2nuga1 | 148 | a.149.1.1 (A:3-150) RNase III endonuclease catalyt | 1e-08 | |
| d2nuga1 | 148 | a.149.1.1 (A:3-150) RNase III endonuclease catalyt | 2e-04 | |
| d2bmfa2 | 305 | c.37.1.14 (A:178-482) Dengue virus helicase {Dengu | 1e-08 | |
| d1u61a_ | 127 | a.149.1.1 (A:) Hypothetical protein BC0111 {Bacill | 1e-08 | |
| d1a1va1 | 136 | c.37.1.14 (A:190-325) HCV helicase domain {Human h | 1e-07 | |
| d2p6ra3 | 202 | c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus | 1e-07 | |
| d1yksa1 | 140 | c.37.1.14 (A:185-324) YFV helicase domain {Yellow | 2e-07 | |
| d1t5la2 | 181 | c.37.1.19 (A:415-595) Nucleotide excision repair e | 3e-07 | |
| d1oywa2 | 206 | c.37.1.19 (A:1-206) RecQ helicase domain {Escheric | 5e-07 | |
| d1o0wa1 | 169 | a.149.1.1 (A:-1-167) RNase III endonuclease cataly | 5e-07 | |
| d1o0wa1 | 169 | a.149.1.1 (A:-1-167) RNase III endonuclease cataly | 4e-05 | |
| d2fwra1 | 200 | c.37.1.19 (A:257-456) DNA repair protein RAD25 {Ar | 7e-06 | |
| d1gkub2 | 248 | c.37.1.16 (B:251-498) Helicase-like "domain" of re | 9e-06 | |
| d1hv8a1 | 208 | c.37.1.19 (A:3-210) Putative DEAD box RNA helicase | 1e-05 | |
| d1gkub1 | 237 | c.37.1.16 (B:1-250) Helicase-like "domain" of reve | 1e-05 | |
| d1hv8a2 | 155 | c.37.1.19 (A:211-365) Putative DEAD box RNA helica | 9e-05 | |
| d2eyqa5 | 211 | c.37.1.19 (A:779-989) Transcription-repair couplin | 0.001 | |
| d1jr6a_ | 138 | c.37.1.14 (A:) HCV helicase domain {Human hepatiti | 0.003 | |
| d1z3ix2 | 298 | c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fis | 0.003 |
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Score = 81.4 bits (199), Expect = 8e-18
Identities = 55/165 (33%), Positives = 80/165 (48%), Gaps = 8/165 (4%)
Query: 46 PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
PRIYQ ++ K N + VL TG GKT+IA+M+ + + ++ LAPT L
Sbjct: 10 PRIYQEVIYAKCKETNCLIVLPTGLGKTLIAMMIAEYRL-----TKYGGKVLMLAPTKPL 64
Query: 106 VHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLS 165
V Q + R + E+ G + + K V TPQ + + L +S
Sbjct: 65 VLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWARAKVI--VATPQTIENDLLAGRIS 122
Query: 166 LDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASP 210
L+ V IV DE H A GN+ Y I +E+ ++ N P V G+TASP
Sbjct: 123 LEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKN-PLVIGLTASP 166
|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 286 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Score = 81.5 bits (200), Expect = 4e-17
Identities = 50/257 (19%), Positives = 105/257 (40%), Gaps = 25/257 (9%)
Query: 279 SKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKI-LYCLDELGLICAYEAVKICL 337
S D ++ + ++M + LR L + + L+ EL A++ +
Sbjct: 42 SSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYI 101
Query: 338 EKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYIST 397
+K+ + + + +++ + ++ A + G D+ K
Sbjct: 102 KKLYEEAKAGSTKASKEIFSDKRMKKAISLLVQAK--------EIGLDHPKM-------D 146
Query: 398 KLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVD- 456
KL E+++ L +++++ I+F AK + + K + G + +
Sbjct: 147 KLKEIIREQLQRKQNSKI--IVFTNYRETAKKIVNELVK----DGIKAKRFVGQASKEND 200
Query: 457 -ALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRA 515
L+ + QK +L+ F G+ N+L AT V EEG+ VP V+ ++ + IQ RGR
Sbjct: 201 RGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRT 260
Query: 516 -RQHNSQFILMLERSER 531
R + I+++ + R
Sbjct: 261 GRHMPGRVIILMAKGTR 277
|
| >d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} Length = 282 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: DNA helicase UvsW domain: DNA helicase UvsW species: Bacteriophage T4 [TaxId: 10665]
Score = 63.0 bits (152), Expect = 6e-11
Identities = 42/184 (22%), Positives = 67/184 (36%), Gaps = 18/184 (9%)
Query: 28 HDHAVDGPSSSTNSINFIPRIYQLK-VFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQA 86
D + + + P YQ VFE R I L T AG+++I +L + +
Sbjct: 96 FDEWLSKLEIYSGNKRIEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN 155
Query: 87 IKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKND 146
+ I+ + PT L Q D + F G D + N
Sbjct: 156 YEGK-----ILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDKYK----NDAP 206
Query: 147 VLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGM 206
V+V T Q ++ ++ F ++ DECH ATG + I+ N FG+
Sbjct: 207 VVVGTWQTVVKQPKEWF---SQFGMMMNDECHLATGKS-ISSIISGLN----NCMFKFGL 258
Query: 207 TASP 210
+ S
Sbjct: 259 SGSL 262
|
| >d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Score = 59.9 bits (145), Expect = 7e-10
Identities = 24/129 (18%), Positives = 39/129 (30%), Gaps = 14/129 (10%)
Query: 393 GYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGST 452
G I + + G+ +IF K + K+ L VAY G
Sbjct: 20 GEIPFYGKAIPLEVIKGGR-----HLIFCHSK---KKCDELAAKLVALGINAVAYYRGLD 71
Query: 453 TSVDALT---PKVQKEVLESFRGGKVNLLFATDVIEEGMH---VPNCSYVIRFDLPKTVS 506
SV + V + L + G + + + + + LP+
Sbjct: 72 VSVIPTSGDVVVVATDALMTGFTGDFDSVIDCNTCVTQTVDFSLDPTFTIETTTLPQDAV 131
Query: 507 SYIQSRGRA 515
S Q RGR
Sbjct: 132 SRTQRRGRT 140
|
| >d1si2a_ b.34.14.1 (A:) Eukaryotic translation initiation factor 2C 1, EIF2C1 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: SH3-like barrel superfamily: PAZ domain family: PAZ domain domain: Eukaryotic translation initiation factor 2C 1, EIF2C1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.8 bits (129), Expect = 6e-09
Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 6/77 (7%)
Query: 891 KNLKDMVVLAIHTG---RIYSIVEIVNNSSAESPFDGNTDDDS---KTFVNYFSEKYGIV 944
K +K + V H G R Y + + ++ F + T YF +KY +
Sbjct: 35 KEIKGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLESGQTVECTVAQYFKQKYNLQ 94
Query: 945 LIHPGQPLLRLKQSHNP 961
L +P P L++ Q
Sbjct: 95 LKYPHLPCLQVGQEQKH 111
|
| >d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 55.7 bits (133), Expect = 7e-09
Identities = 36/183 (19%), Positives = 63/183 (34%), Gaps = 32/183 (17%)
Query: 29 DHAVDGPSSSTNSINFIPRIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAI 87
D+A D + R YQ K E + VL TG+GKT +A+ I +
Sbjct: 54 DNAADPIPTPYFDAEISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINE----- 108
Query: 88 KSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDV 147
+ + PT+ L Q + + + + V E+ G + ++ D
Sbjct: 109 ----LSTPTLIVVPTLALAEQWKERLGIFGEEYVGEFSG------RIKELKPLTVSTYDS 158
Query: 148 LVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMT 207
+ + L + ++ DE HH Y +I + P G+T
Sbjct: 159 AYVNAEKLGNRFM----------LLIFDEVHHLPAES-YVQIAQMS-----IAPFRLGLT 202
Query: 208 ASP 210
A+
Sbjct: 203 ATF 205
|
| >d2nuga1 a.149.1.1 (A:3-150) RNase III endonuclease catalytic domain {Aquifex aeolicus [TaxId: 63363]} Length = 148 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: RNase III domain-like superfamily: RNase III domain-like family: RNase III catalytic domain-like domain: RNase III endonuclease catalytic domain species: Aquifex aeolicus [TaxId: 63363]
Score = 53.7 bits (128), Expect = 1e-08
Identities = 23/136 (16%), Positives = 48/136 (35%), Gaps = 25/136 (18%)
Query: 1240 IKDIESKIGYEFTVKFLLQEAITHASVQEFYCYQNLYKHLQHCSTLLLSQITEYVKSFPK 1299
++ +E K+GY F K LL++A+TH S + Y+ L + + +
Sbjct: 2 LEQLEKKLGYTFKDKSLLEKALTHVSYSKKEHYETLEFLGDALVNFFIVDLLVQYSPNKR 61
Query: 1300 PGETTDSGPSMKAPKAL-------------------------GDLLESIVGAVLIDTKLN 1334
G + + + + GD+ E++ AV ID+ +
Sbjct: 62 EGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKRGKINETIIGDVFEALWAAVYIDSGRD 121
Query: 1335 LDEVWRIFKPILSPIV 1350
+ +F + +
Sbjct: 122 ANFTRELFYKLFKEDI 137
|
| >d2nuga1 a.149.1.1 (A:3-150) RNase III endonuclease catalytic domain {Aquifex aeolicus [TaxId: 63363]} Length = 148 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: RNase III domain-like superfamily: RNase III domain-like family: RNase III catalytic domain-like domain: RNase III endonuclease catalytic domain species: Aquifex aeolicus [TaxId: 63363]
Score = 41.4 bits (96), Expect = 2e-04
Identities = 21/75 (28%), Positives = 37/75 (49%)
Query: 1046 SLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNS 1105
SL+ +ALT + + E LE LGD+++ + + L P K EG LS +++ +
Sbjct: 17 SLLEKALTHVSYSKKEHYETLEFLGDALVNFFIVDLLVQYSPNKREGFLSPLKAYLISEE 76
Query: 1106 TLHKLGTDRKLQGYI 1120
+ L +L +I
Sbjct: 77 FFNLLAQKLELHKFI 91
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Score = 56.1 bits (134), Expect = 1e-08
Identities = 26/122 (21%), Positives = 43/122 (35%), Gaps = 18/122 (14%)
Query: 58 KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT 117
K+R TI L GAGKT + I + +AIK + LAPT + + + +R
Sbjct: 8 KKRLTIMDLHPGAGKTKRYLPAI--VREAIKRGLR---TLILAPTRVVAAEMEEALRGL- 61
Query: 118 DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDEC 177
+ + + V +M L + + I++DE
Sbjct: 62 -----------PIRYQTPAIRAEHTGREIVDLMCHATFTMRLLSP-IRVPNYNLIIMDEA 109
Query: 178 HH 179
H
Sbjct: 110 HF 111
|
| >d1u61a_ a.149.1.1 (A:) Hypothetical protein BC0111 {Bacillus cereus [TaxId: 1396]} Length = 127 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: RNase III domain-like superfamily: RNase III domain-like family: RNase III catalytic domain-like domain: Hypothetical protein BC0111 species: Bacillus cereus [TaxId: 1396]
Score = 52.7 bits (126), Expect = 1e-08
Identities = 18/152 (11%), Positives = 37/152 (24%), Gaps = 34/152 (22%)
Query: 1059 ESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQG 1118
+ + L +GD+V + + HL + QL + V K+
Sbjct: 4 KQLNSLALAYMGDAVYEQYIRYHLLQKGKVR-PNQLHRLGTSFVSAKAQAKVVYHLLETA 62
Query: 1119 YIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWM 1178
++ + R G+ T
Sbjct: 63 FLTEEEEAVLRR-------------------------GRNANSGTVPKNTDVQT------ 91
Query: 1179 GSKTIADCAEALIGAYYVGGGLIAALYMMKWL 1210
+ EALIG +++ ++
Sbjct: 92 --YRHSTAFEALIGYHHLLNNRERLDEIVYKA 121
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 136 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Score = 50.2 bits (119), Expect = 1e-07
Identities = 19/149 (12%), Positives = 36/149 (24%), Gaps = 23/149 (15%)
Query: 62 TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEV 121
TG+GK+ + A + G+K ++ L P+V +
Sbjct: 11 AHLHAPTGSGKSTK-------VPAAYAAQGYK--VLVLNPSVAATLGFGAYMS------- 54
Query: 122 EEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHAT 181
+ + + + I+ DECH
Sbjct: 55 KAHGVDPNIRTGVRTITTGSPITYSTYGKFLADGGCSGGA-------YDIIICDECHSTD 107
Query: 182 GNHPYTKIMKEFYHKSDNKPKVFGMTASP 210
++ V TA+P
Sbjct: 108 ATSILGIGTVLDQAETAGARLVVLATATP 136
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 202 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 51.5 bits (122), Expect = 1e-07
Identities = 29/166 (17%), Positives = 65/166 (39%), Gaps = 14/166 (8%)
Query: 46 PRIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVH 104
Q + E +N + + T AGKT++A M ++ +++ P
Sbjct: 26 LFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEM------AMVREAIKGGKSLYVVPLRA 79
Query: 105 LVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL 164
L ++Y+ + + E+ G+ D + + + D++V T + +R
Sbjct: 80 LAGEKYESFK-----KWEKIGLRIGISTGDYESRDEHLGDCDIIVTTSEKADSLIRNRAS 134
Query: 165 SLDIVCFIVIDECHH--ATGNHPYTKIMKEFYHKSDNKPKVFGMTA 208
+ V +V+DE H + +I+ + + +V G++A
Sbjct: 135 WIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLSA 180
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Length = 140 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Score = 50.1 bits (118), Expect = 2e-07
Identities = 23/153 (15%), Positives = 45/153 (29%), Gaps = 19/153 (12%)
Query: 58 KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT 117
K T+ GAGKT + I ++L + +V +
Sbjct: 6 KGMTTVLDFHPGAGKTRRFLPQILAECA------RRRLRTLVLAPTRVVLSEM------- 52
Query: 118 DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDEC 177
+E + V + + M L + + ++ I++DE
Sbjct: 53 ----KEAFHGLDVKFHTQAFSAHGSGREVIDAMCHATLTYRMLEPTRVVNWEV-IIMDEA 107
Query: 178 HHATGNHPYTKIMKEFYHKSDNKPKVFGMTASP 210
H + ++ N+ MTA+P
Sbjct: 108 HFLDPASIAARGWAAHRARA-NESATILMTATP 139
|
| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Length = 181 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Score = 50.2 bits (119), Expect = 3e-07
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 459 TPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPK-----TVSSYIQSRG 513
+ E++ R GK ++L +++ EG+ +P S V D K + S IQ+ G
Sbjct: 66 KTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIG 125
Query: 514 RARQH 518
RA ++
Sbjct: 126 RAARN 130
|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Score = 49.6 bits (117), Expect = 5e-07
Identities = 26/175 (14%), Positives = 58/175 (33%), Gaps = 16/175 (9%)
Query: 46 PRIYQLKVFE-VAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVH 104
R Q ++ + V R+ + V+ TG GK++ + L + ++P +
Sbjct: 26 FRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALL---------LNGLTVVVSPLIS 76
Query: 105 LVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL 164
L+ Q D ++ + ++ + +L + P+ L+ L
Sbjct: 77 LMKDQVDQLQ-ANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHL 135
Query: 165 SLDIVCFIVIDECHH----ATGNHPYTKIMKEFYHKSDNKPKV-FGMTASPVVRK 214
+ + +DE H P + + + P + TA R+
Sbjct: 136 AHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQ 190
|
| >d1o0wa1 a.149.1.1 (A:-1-167) RNase III endonuclease catalytic domain {Thermotoga maritima [TaxId: 2336]} Length = 169 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: RNase III domain-like superfamily: RNase III domain-like family: RNase III catalytic domain-like domain: RNase III endonuclease catalytic domain species: Thermotoga maritima [TaxId: 2336]
Score = 49.1 bits (116), Expect = 5e-07
Identities = 24/162 (14%), Positives = 50/162 (30%), Gaps = 42/162 (25%)
Query: 1236 RINEIKDIESKIGYEFTVKFLLQEAITHAS-------------------------VQEFY 1270
+++ + + G F + LL A+ H+S V E +
Sbjct: 7 ERKIVEEFQKETGINFKNEELLFRALCHSSYANEQNQAGRKDVESNEKLEFLGDAVLELF 66
Query: 1271 CYQNLYKHLQHCSTLLLSQITEYVKS---------------FPKPGETTDSGPSMKAPKA 1315
+ LYK L+++ S F G+ +
Sbjct: 67 VCEILYKKYPEAEVGDLARVKSAAASEEVLAMVSRKMNLGKFLFLGKGEEKTGGRDRDSI 126
Query: 1316 LGDLLESIVGAVLIDTKLNL--DEVWRIFKPILSPIVTPDKL 1355
L D E+++ A+ +D + + F+ + I+ + L
Sbjct: 127 LADAFEALLAAIYLDQGYEKIKELFEQEFEFYIEKIMKGEML 168
|
| >d1o0wa1 a.149.1.1 (A:-1-167) RNase III endonuclease catalytic domain {Thermotoga maritima [TaxId: 2336]} Length = 169 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: RNase III domain-like superfamily: RNase III domain-like family: RNase III catalytic domain-like domain: RNase III endonuclease catalytic domain species: Thermotoga maritima [TaxId: 2336]
Score = 43.7 bits (102), Expect = 4e-05
Identities = 35/185 (18%), Positives = 57/185 (30%), Gaps = 58/185 (31%)
Query: 1028 SQLREEINCHSRNFHIPSSLILEALT---------TLGCCESFSMERLELLGDSVLKYAV 1078
+ ++E + +N L+ AL G + S E+LE LGD+VL+ V
Sbjct: 12 EEFQKETGINFKN----EELLFRALCHSSYANEQNQAGRKDVESNEKLEFLGDAVLELFV 67
Query: 1079 SCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSL 1138
L+ YP+ G L+ +S A L + L ++
Sbjct: 68 CEILYKKYPEAEVGDLARVKSAAASEEVLAMVSRKMNLGKFLF----------------- 110
Query: 1139 RPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGG 1198
+GK + +AD EAL+ A Y+
Sbjct: 111 ----------------------------LGKGEEKTGGRDRDSILADAFEALLAAIYLDQ 142
Query: 1199 GLIAA 1203
G
Sbjct: 143 GYEKI 147
|
| >d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 46.4 bits (109), Expect = 7e-06
Identities = 32/174 (18%), Positives = 64/174 (36%), Gaps = 13/174 (7%)
Query: 344 QEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELL 403
++E Y + K FL + A + F E
Sbjct: 17 EDERVEYEKREKVYKQFLRARGITLRRA-----EDFNKIVMASGYDERAYEALRAWEEAR 71
Query: 404 QLFL-SFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLT-HLTVAYLTGSTTSVDALTPK 461
++ S K ++ I+ R + R + V ++ + +T T+ +
Sbjct: 72 RIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFLIPAITHRTS------RE 125
Query: 462 VQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRA 515
++E+LE FR G+ + ++ V++EG+ VP+ + + + YIQ GR
Sbjct: 126 EREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRI 179
|
| >d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 248 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 46.7 bits (110), Expect = 9e-06
Identities = 19/147 (12%), Positives = 41/147 (27%), Gaps = 26/147 (17%)
Query: 390 VDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLT 449
D+ + L + G II+ A+ + +K
Sbjct: 5 EDVAVNDESISTLSSILEKLGTGG----IIYARTGEEAEEIYESLKN----------KFR 50
Query: 450 GSTTSVDALTPKVQKEVLESFRGGKVNLLFAT----DVIEEGMHVP-NCSYVIRFDLPKT 504
+ +K E F G+++ L T + G+ +P + + P
Sbjct: 51 I------GIVTATKKGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCPSF 104
Query: 505 VSSYIQSRGRARQHNSQFILMLERSER 531
+ I+ + + L R+
Sbjct: 105 RVT-IEDIDSLSPQMVKLLAYLYRNVD 130
|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 208 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 45.4 bits (107), Expect = 1e-05
Identities = 15/79 (18%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 101 PTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALR 160
V + + ++ + + ++ + YG K + K + +++V TP +LD +
Sbjct: 83 ELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQ-----IKALKNANIVVGTPGRILDHIN 137
Query: 161 KAFLSLDIVCFIVIDECHH 179
+ L+L V + ++DE
Sbjct: 138 RGTLNLKNVKYFILDEADE 156
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 237 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 46.0 bits (108), Expect = 1e-05
Identities = 28/140 (20%), Positives = 53/140 (37%), Gaps = 16/140 (11%)
Query: 46 PRIYQLKVFE-VAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVH 104
PR Q + + ++ + A TG GKT + + +A K + PT
Sbjct: 44 PRAIQKMWAKRILRKESFAATAPTGVGKTSFGLAMSLFLALKGKR------CYVIFPTSL 97
Query: 105 LVHQQYDVIRVHTDF-----EVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL 159
LV Q + IR + + E Y + + + + + + + +++ T Q L
Sbjct: 98 LVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKHY 157
Query: 160 RKAFLSLDIVCFIVIDECHH 179
R+ L FI +D+
Sbjct: 158 RE----LGHFDFIFVDDVDA 173
|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 155 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 42.3 bits (98), Expect = 9e-05
Identities = 27/141 (19%), Positives = 57/141 (40%), Gaps = 12/141 (8%)
Query: 394 YISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTT 453
Y+ +E + K+ + ++F + + L + +
Sbjct: 8 YVEVNENERFEALCRLLKNKEFYGLVFC----------KTKRDTKELASMLRDIGFKAGA 57
Query: 454 SVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRG 513
L+ +++V+ F+ K+ +L ATDV+ G+ V + + VI + LP+ SY+ G
Sbjct: 58 IHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIG 117
Query: 514 RARQHNSQ--FILMLERSERS 532
R + + I ++ R E
Sbjct: 118 RTGRAGKKGKAISIINRREYK 138
|
| >d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Length = 211 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Score = 39.6 bits (92), Expect = 0.001
Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 2/91 (2%)
Query: 459 TPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPK-TVSSYIQSRGRA-R 516
+ + V+ F + N+L T +IE G+ +P + +I ++ Q RGR R
Sbjct: 68 RERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGR 127
Query: 517 QHNSQFILMLERSERSVTDTALSRDPEACFL 547
H+ + +L +++T A R L
Sbjct: 128 SHHQAYAWLLTPHPKAMTTDAQKRLEAIASL 158
|
| >d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 138 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Score = 37.4 bits (86), Expect = 0.003
Identities = 12/65 (18%), Positives = 18/65 (27%), Gaps = 3/65 (4%)
Query: 470 FRGGKVNLLFATDVIEEGMHVPN---CSYVIRFDLPKTVSSYIQSRGRARQHNSQFILML 526
++ ATD + G P+ S Q RGR + +
Sbjct: 74 IPTNGDVVVVATDALMTGFTGDFDSVIDCNTSDGKPQDAVSRTQRRGRTGRGKPGIYRFV 133
Query: 527 ERSER 531
ER
Sbjct: 134 APGER 138
|
| >d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Length = 298 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Score = 38.9 bits (89), Expect = 0.003
Identities = 30/186 (16%), Positives = 57/186 (30%), Gaps = 13/186 (6%)
Query: 14 EVHSPNPPDMGSSGHDHAVDGPSSSTNSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKT 73
VH P + H +G + F+ + E I E G GKT
Sbjct: 43 PVHVVVDPVLSKVLRPHQREG-------VKFLWDCVTGRRIE--NSYGCIMADEMGLGKT 93
Query: 74 MIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEW 133
+ + LI + + + + + LV Y+ + V+ G +
Sbjct: 94 LQCITLIWTLLKQSPDCKPEIDKVIVVSPSSLVRNWYNEVGKWLGGRVQPVAIDGGSKDE 153
Query: 134 DSQCWQKEINKNDVLVMTPQIL----LDALRKAFLSLDIVCFIVIDECHHATGNHPYTKI 189
I++ + + TP ++ L L V ++ DE H + T +
Sbjct: 154 IDSKLVNFISQQGMRIPTPILIISYETFRLHAEVLHKGKVGLVICDEGHRLKNSDNQTYL 213
Query: 190 MKEFYH 195
+
Sbjct: 214 ALNSMN 219
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1590 | |||
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 99.93 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.93 | |
| d1o0wa1 | 169 | RNase III endonuclease catalytic domain {Thermotog | 99.9 | |
| d2nuga1 | 148 | RNase III endonuclease catalytic domain {Aquifex a | 99.9 | |
| d1rifa_ | 282 | DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] | 99.86 | |
| d2fz4a1 | 206 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 99.84 | |
| d1wp9a2 | 286 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.84 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.83 | |
| d1hv8a1 | 208 | Putative DEAD box RNA helicase {Archaeon Methanoco | 99.82 | |
| d2j0sa1 | 222 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 99.82 | |
| d1t6na_ | 207 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 99.81 | |
| d2g9na1 | 218 | Initiation factor 4a {Human (Homo sapiens) [TaxId: | 99.79 | |
| d1veca_ | 206 | DEAD box RNA helicase rck/p54 {Human (Homo sapiens | 99.79 | |
| d1s2ma2 | 171 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 99.79 | |
| d1oywa3 | 200 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.79 | |
| d1hv8a2 | 155 | Putative DEAD box RNA helicase {Archaeon Methanoco | 99.79 | |
| d1t5la2 | 181 | Nucleotide excision repair enzyme UvrB {Bacillus c | 99.79 | |
| d2j0sa2 | 168 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 99.79 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 99.78 | |
| d1fuka_ | 162 | Initiation factor 4a {Baker's yeast (Saccharomyces | 99.78 | |
| d1qdea_ | 212 | Initiation factor 4a {Baker's yeast (Saccharomyces | 99.77 | |
| d1wrba1 | 238 | putative ATP-dependent RNA helicase VlgB {Flatworm | 99.77 | |
| d1t5ia_ | 168 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 99.77 | |
| d2rb4a1 | 168 | ATP-dependent RNA helicase DDX25 {Human (Homo sapi | 99.75 | |
| d1oywa2 | 206 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.75 | |
| d1c4oa2 | 174 | Nucleotide excision repair enzyme UvrB {Thermus th | 99.74 | |
| d1s2ma1 | 206 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 99.73 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 99.72 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 99.71 | |
| d1q0ua_ | 209 | Probable DEAD box RNA helicase YqfR {Bacillus stea | 99.67 | |
| d1z3ix2 | 298 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 99.66 | |
| d1z63a1 | 230 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 99.66 | |
| d2nuga1 | 148 | RNase III endonuclease catalytic domain {Aquifex a | 99.62 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.61 | |
| d1u61a_ | 127 | Hypothetical protein BC0111 {Bacillus cereus [TaxI | 99.58 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 99.57 | |
| d1z3ix1 | 346 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 99.54 | |
| d2fwra1 | 200 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 99.51 | |
| d2eyqa5 | 211 | Transcription-repair coupling factor, TRCF {Escher | 99.47 | |
| d1o0wa1 | 169 | RNase III endonuclease catalytic domain {Thermotog | 99.46 | |
| d2p6ra4 | 201 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.45 | |
| d1jr6a_ | 138 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.43 | |
| d1uila_ | 113 | ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus mus | 99.42 | |
| d1a1va2 | 299 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.38 | |
| d1gm5a4 | 206 | RecG helicase domain {Thermotoga maritima [TaxId: | 99.37 | |
| d1gkub2 | 248 | Helicase-like "domain" of reverse gyrase {Archaeon | 99.36 | |
| d1z5za1 | 244 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 99.3 | |
| d1di2a_ | 69 | Double-stranded RNA-binding protein A, second dsRB | 99.3 | |
| d2dixa1 | 73 | Interferon-inducible double stranded RNA-dependent | 99.28 | |
| d1uhza_ | 89 | staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10 | 99.26 | |
| d1ekza_ | 76 | Staufen, domain III {Fruit fly (Drosophila melanog | 99.26 | |
| d1whqa_ | 99 | ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus mus | 99.24 | |
| d2cpna1 | 76 | TAR RNA-binding protein 2 {Human (Homo sapiens) [T | 99.22 | |
| d1o0wa2 | 69 | RNase III, C-terminal domain {Thermotoga maritima | 99.22 | |
| d2nuga2 | 68 | RNase III, C-terminal domain {Aquifex aeolicus [Ta | 99.21 | |
| d1qu6a1 | 90 | dsRNA-dependent protein kinase pkr {Human (Homo sa | 99.21 | |
| d1x49a1 | 85 | dsRNA-dependent protein kinase pkr {Mouse (Mus mus | 99.16 | |
| d1x48a1 | 76 | dsRNA-dependent protein kinase pkr {Mouse (Mus mus | 99.12 | |
| d1qu6a2 | 89 | dsRNA-dependent protein kinase pkr {Human (Homo sa | 99.12 | |
| d1whna_ | 128 | tRNA-dihydrouridine synthase 2-like, Dus2l (231001 | 99.08 | |
| d1x47a1 | 85 | Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]} | 99.08 | |
| d1yksa2 | 299 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 98.84 | |
| d2b7va1 | 71 | dsRNA-specific editase 1 {Rat (Rattus norvegicus) | 98.79 | |
| d1whqa_ | 99 | ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus mus | 98.76 | |
| d2cpna1 | 76 | TAR RNA-binding protein 2 {Human (Homo sapiens) [T | 98.74 | |
| d1x47a1 | 85 | Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]} | 98.73 | |
| d1t4oa_ | 81 | RNase III, C-terminal domain {Baker's yeast (Sacch | 98.72 | |
| d2dmya1 | 84 | Spermatid perinuclear RNA-binding protein {Human ( | 98.71 | |
| d1whna_ | 128 | tRNA-dihydrouridine synthase 2-like, Dus2l (231001 | 98.68 | |
| d1qu6a2 | 89 | dsRNA-dependent protein kinase pkr {Human (Homo sa | 98.65 | |
| d1x48a1 | 76 | dsRNA-dependent protein kinase pkr {Mouse (Mus mus | 98.65 | |
| d1o0wa2 | 69 | RNase III, C-terminal domain {Thermotoga maritima | 98.63 | |
| d1di2a_ | 69 | Double-stranded RNA-binding protein A, second dsRB | 98.62 | |
| d1uhza_ | 89 | staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10 | 98.61 | |
| d2dixa1 | 73 | Interferon-inducible double stranded RNA-dependent | 98.6 | |
| d1uila_ | 113 | ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus mus | 98.57 | |
| d1qu6a1 | 90 | dsRNA-dependent protein kinase pkr {Human (Homo sa | 98.56 | |
| d1x49a1 | 85 | dsRNA-dependent protein kinase pkr {Mouse (Mus mus | 98.56 | |
| d2b7ta1 | 73 | dsRNA-specific editase 1 {Rat (Rattus norvegicus) | 98.55 | |
| d2nuga2 | 68 | RNase III, C-terminal domain {Aquifex aeolicus [Ta | 98.54 | |
| d1t4oa_ | 81 | RNase III, C-terminal domain {Baker's yeast (Sacch | 98.41 | |
| d1ekza_ | 76 | Staufen, domain III {Fruit fly (Drosophila melanog | 98.37 | |
| d1tf5a3 | 273 | Translocation ATPase SecA, nucleotide-binding doma | 98.24 | |
| d1tf5a4 | 175 | Translocation ATPase SecA, nucleotide-binding doma | 98.23 | |
| d2b7va1 | 71 | dsRNA-specific editase 1 {Rat (Rattus norvegicus) | 98.18 | |
| d1nkta3 | 288 | Translocation ATPase SecA, nucleotide-binding doma | 98.11 | |
| d1u04a1 | 322 | Argonaute homologue PF0537 {Pyrococcus furiosus [T | 97.98 | |
| d2dmya1 | 84 | Spermatid perinuclear RNA-binding protein {Human ( | 97.93 | |
| d2b7ta1 | 73 | dsRNA-specific editase 1 {Rat (Rattus norvegicus) | 97.8 | |
| d1si2a_ | 126 | Eukaryotic translation initiation factor 2C 1, EIF | 97.65 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 97.29 | |
| d1nkta4 | 219 | Translocation ATPase SecA, nucleotide-binding doma | 97.21 | |
| d1u61a_ | 127 | Hypothetical protein BC0111 {Bacillus cereus [TaxI | 97.0 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 96.76 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 96.28 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 96.17 | |
| d1t5la1 | 413 | Nucleotide excision repair enzyme UvrB {Bacillus c | 96.16 | |
| g1qhh.1 | 623 | DEXX box DNA helicase {Bacillus stearothermophilus | 96.13 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 95.25 | |
| d2eyqa5 | 211 | Transcription-repair coupling factor, TRCF {Escher | 95.09 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 94.37 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 94.05 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 93.01 | |
| d1t2sa_ | 123 | Argonaute 2 {Fruit fly (Drosophila melanogaster) [ | 92.65 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 92.35 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 91.56 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 91.4 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 90.92 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 89.59 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 89.52 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 89.34 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 89.13 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 87.46 | |
| d1c4oa1 | 408 | Nucleotide excision repair enzyme UvrB {Thermus th | 87.37 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 87.16 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 86.98 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 86.47 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 82.64 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 81.33 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 80.58 |
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=99.93 E-value=7.3e-25 Score=200.69 Aligned_cols=261 Identities=20% Similarity=0.132 Sum_probs=166.7
Q ss_pred HCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHH
Q ss_conf 24898999089983999999999999999770799729999935755599999999861698358986688877302278
Q 000384 58 KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQC 137 (1590)
Q Consensus 58 l~~n~Ii~~~TGsGKTliaillI~~~l~~~~~~~~~~~vlvLvPtv~Lv~Qq~~~i~~~~~~~v~~~~G~~~~d~~~~~~ 137 (1590)
.++++|+.+|||+|||++++..+.+... . .+.++++++|+++|+.|+++.++... ........ .
T Consensus 8 ~~~~~lv~~~TGsGKT~~~l~~~~~~~~---~--~~~~~lvi~Ptr~La~q~~~~l~~~~-~~~~~~~~---------~- 71 (305)
T d2bmfa2 8 KKRLTIMDLHPGAGKTKRYLPAIVREAI---K--RGLRTLILAPTRVVAAEMEEALRGLP-IRYQTPAI---------R- 71 (305)
T ss_dssp TTCEEEECCCTTSSTTTTHHHHHHHHHH---H--HTCCEEEEESSHHHHHHHHHHTTTSC-CBCCC--------------
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHH---H--CCCEEEEECCHHHHHHHHHHHHHCCC-CCEEEEEE---------E-
T ss_conf 6994999979999787999999999987---2--69989998238999999999985487-52111378---------5-
Q ss_pred HHHHCCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHC--CCCCCCEEEEECCCCCCCC
Q ss_conf 89830789699985999999997217676542189984641003899089999999730--8999809998055775678
Q 000384 138 WQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHK--SDNKPKVFGMTASPVVRKG 215 (1590)
Q Consensus 138 w~~~~~~~~VlV~T~q~Ll~~L~~~~~~l~~i~LIIiDEaH~~~~~~~~~~imk~~~~~--~~~~priLgLTATP~~~~~ 215 (1590)
........++++|+++|...... ...+.+++++|+||||++..+ . ...+ .++.. .....+++++|||+.....
T Consensus 72 -~~~~~~~~i~~~t~~~l~~~~~~-~~~~~~~~~vViDE~H~~~~~-~-~~~~-~~l~~~~~~~~~~~v~~SAT~~~~~~ 146 (305)
T d2bmfa2 72 -AEHTGREIVDLMCHATFTMRLLS-PIRVPNYNLIIMDEAHFTDPA-S-IAAR-GYISTRVEMGEAAGIFMTATPPGSRD 146 (305)
T ss_dssp -----CCCSEEEEEHHHHHHHHTS-SSCCCCCSEEEEESTTCCSHH-H-HHHH-HHHHHHHHHTSCEEEEECSSCTTCCC
T ss_pred -ECCCCCCCCCCCCCHHHHHHHHC-CCCCCCEEEEEEEEEEECCHH-H-HHHH-HHHHHHHCCCCCEEEEEECCCCCCEE
T ss_conf -01257653013774899999845-853154008985301112520-5-7888-99998416653138994157876433
Q ss_pred CCCHHCHHHHHHHHHHHCCCEEEEECCHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88800099999999965198067304512262205686133576358877654113567875532104578988534321
Q 000384 216 VSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNC 295 (1590)
Q Consensus 216 ~~~~~~~~~~i~~Le~~l~s~i~t~~~~~~l~~~~~~p~~~~~~y~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~ 295 (1590)
... ....+.......-+...
T Consensus 147 ~~~------------------------------~~~~~~~~~~~~~~~~~------------------------------ 166 (305)
T d2bmfa2 147 PFP------------------------------QSNAPIMDEEREIPERS------------------------------ 166 (305)
T ss_dssp SSC------------------------------CCSSCEEEEECCCCCSC------------------------------
T ss_pred EEC------------------------------CCCCCCEEEEEECCHHH------------------------------
T ss_conf 402------------------------------34786127998615888------------------------------
Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 00000358999999999999999999983145799999999999676778888986546999999999999983006861
Q 000384 296 YKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLA 375 (1590)
Q Consensus 296 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 375 (1590)
T Consensus 167 -------------------------------------------------------------------------------- 166 (305)
T d2bmfa2 167 -------------------------------------------------------------------------------- 166 (305)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCC
Q ss_conf 01100246772101137999999999999998409999818999980098999999998629999870699997578887
Q 000384 376 DKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSV 455 (1590)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~lL~~~~~~~~~~~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~l~G~~~~~ 455 (1590)
...... .+. ....+++|||+++..+..++..|.. .++.+..+||.
T Consensus 167 -------------------~~~~~~----~~~----~~~~~~lvf~~~~~~~~~l~~~L~~----~~~~~~~l~~~---- 211 (305)
T d2bmfa2 167 -------------------WNSGHE----WVT----DFKGKTVWFVPSIKAGNDIAACLRK----NGKKVIQLSRK---- 211 (305)
T ss_dssp -------------------CSSCCH----HHH----SSCSCEEEECSCHHHHHHHHHHHHH----HTCCCEECCTT----
T ss_pred -------------------HHHHHH----HHH----HHCCCEEEEECCHHHHHHHHHHHHH----CCCCEEEECCC----
T ss_conf -------------------999999----999----6079989996309999999999986----79989995783----
Q ss_pred CCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCEEE----------ECCC----------CCCHHHHHHHHCCC
Q ss_conf 988999999999983089821999724322354578863899----------8069----------99977999972112
Q 000384 456 DALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVI----------RFDL----------PKTVSSYIQSRGRA 515 (1590)
Q Consensus 456 ~~l~~~~q~~vl~~Fr~g~~niLVaTsvleeGIDIp~~~~VI----------~fD~----------p~s~~syiQr~GRA 515 (1590)
+. .+....|++|..+++|||++++.|+|++ .+.|| .||. |-|..+|+||+|||
T Consensus 212 --~~----~~~~~~~~~~~~~~lvaT~~~~~G~~~~-~~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GR~ 284 (305)
T d2bmfa2 212 --TF----DSEYIKTRTNDWDFVVTTDISEMGANFK-AERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRV 284 (305)
T ss_dssp --CH----HHHGGGGGTSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTS
T ss_pred --CH----HHHHHHHHCCCHHHHHHHHHHHHCCCCC-CCEEEECCCCEEEEEECCCCCCEEEECCCCCCHHHHHHHHCCC
T ss_conf --84----7777543100011355567887257888-4089975874146573389876388044569988983241186
Q ss_pred CCCCCE
Q ss_conf 334862
Q 000384 516 RQHNSQ 521 (1590)
Q Consensus 516 rR~gs~ 521 (1590)
||.|.+
T Consensus 285 GR~~~~ 290 (305)
T d2bmfa2 285 GRNPKN 290 (305)
T ss_dssp SCSSSC
T ss_pred CCCCCC
T ss_conf 828999
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.93 E-value=4.7e-24 Score=194.56 Aligned_cols=175 Identities=34% Similarity=0.472 Sum_probs=138.5
Q ss_pred CCCCCCHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHCC---
Q ss_conf 79999488999999972489899908998399999999999999977079972999993575559999999986169---
Q 000384 42 INFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTD--- 118 (1590)
Q Consensus 42 ~~~~pR~yQ~e~le~~l~~n~Ii~~~TGsGKTliaillI~~~l~~~~~~~~~~~vlvLvPtv~Lv~Qq~~~i~~~~~--- 118 (1590)
..++||+||.++++.++++|+|+++|||+|||+++++++...+. . .+++++|++|+++|+.||++++++.++
T Consensus 6 ~~~~pr~~Q~~~~~~~~~~n~lv~~pTGsGKT~i~~~~~~~~~~----~-~~~~il~i~P~~~L~~q~~~~~~~~~~~~~ 80 (200)
T d1wp9a1 6 DLIQPRIYQEVIYAKCKETNCLIVLPTGLGKTLIAMMIAEYRLT----K-YGGKVLMLAPTKPLVLQHAESFRRLFNLPP 80 (200)
T ss_dssp HHHCCCHHHHHHHHHGGGSCEEEECCTTSCHHHHHHHHHHHHHH----H-SCSCEEEECSSHHHHHHHHHHHHHHBCSCG
T ss_pred CCCCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHH----H-CCCCEEEECCCHHHHHHHHHHHHHHHCCCC
T ss_conf 77898899999999996399699918997288999999999997----0-698189973705777788999998633554
Q ss_pred CCEEEEECCCCCCCCCHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 83589866888773022788983078969998599999999721767654218998464100389908999999973089
Q 000384 119 FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSD 198 (1590)
Q Consensus 119 ~~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~Ll~~L~~~~~~l~~i~LIIiDEaH~~~~~~~~~~imk~~~~~~~ 198 (1590)
.++..+.++..... +...+.+.+++++|++.+.+.+.+..+.+.++++||+||||++..++.+..+...+... .
T Consensus 81 ~~v~~~~~~~~~~~-----~~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~vIiDE~H~~~~~~~~~~~~~~~~~~-~ 154 (200)
T d1wp9a1 81 EKIVALTGEKSPEE-----RSKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQ-A 154 (200)
T ss_dssp GGEEEECSCSCHHH-----HHHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHH-C
T ss_pred CCEEEEECCCCHHH-----HHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEHHHHHCCHHHHHHHHHHHHC-C
T ss_conf 20134203664567-----77765114222343202577876313311566618998621131221689999999865-8
Q ss_pred CCCCEEEEECCCCCCCCCCCHHCHHHHHHHHHHHCCCE
Q ss_conf 99809998055775678888000999999999651980
Q 000384 199 NKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQ 236 (1590)
Q Consensus 199 ~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~s~ 236 (1590)
..+++++|||||.... ..+..+...++..
T Consensus 155 ~~~~~l~~SATp~~~~---------~~~~~~~~~l~~~ 183 (200)
T d1wp9a1 155 KNPLVIGLTASPGSTP---------EKIMEVINNLGIE 183 (200)
T ss_dssp SSCCEEEEESCSCSSH---------HHHHHHHHHTTCC
T ss_pred CCCCEEEEEECCCCCH---------HHHHHHHHCCCCE
T ss_conf 9985799996179739---------9999998469954
|
| >d2nuga1 a.149.1.1 (A:3-150) RNase III endonuclease catalytic domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: RNase III domain-like superfamily: RNase III domain-like family: RNase III catalytic domain-like domain: RNase III endonuclease catalytic domain species: Aquifex aeolicus [TaxId: 63363]
Probab=99.90 E-value=1.9e-23 Score=189.94 Aligned_cols=126 Identities=27% Similarity=0.395 Sum_probs=113.9
Q ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCHHH
Q ss_conf 99998998001578999967999953478889999950344242366768999999830999994256898877460099
Q 000384 1027 ASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNST 1106 (1590)
Q Consensus 1027 a~~l~~~l~~~~~~~~~~~~lll~AlT~~s~~~~~n~ErLE~LGDs~Lk~~~s~~l~~~~p~~~eg~Ls~~r~~~vsN~~ 1106 (1590)
.+++++.|+|.|.| ++++.+||||+|+....||||||||||++|+++++.|+|.+||+.++|.||.+|+.+|||.+
T Consensus 2 l~~le~~igy~F~n----~~LL~~Alth~S~~~~~~~erLeflGDavl~~~v~~~l~~~~p~~~~g~lt~~r~~lvsn~~ 77 (148)
T d2nuga1 2 LEQLEKKLGYTFKD----KSLLEKALTHVSYSKKEHYETLEFLGDALVNFFIVDLLVQYSPNKREGFLSPLKAYLISEEF 77 (148)
T ss_dssp HHHHHHHHTCCCSS----HHHHHHHHBCTTTCSSSCSHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHTSHHH
T ss_pred HHHHHHHHCCCCCC----HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 88999998986288----89999986685768875509999999888754557899850877516788777777641367
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCHHHHH
Q ss_conf 99997827974321235577786447986677887887898766546899643455420117767898522354214569
Q 000384 1107 LHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADC 1186 (1590)
Q Consensus 1107 L~~~a~~~gL~~~i~~~~f~~~~W~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~iAD~ 1186 (1590)
|+.+|.++||+.||+..+ + ...+|++||+
T Consensus 78 La~~a~~lgl~~~i~~~~---------~------------------------------------------~~~~kilad~ 106 (148)
T d2nuga1 78 FNLLAQKLELHKFIRIKR---------G------------------------------------------KINETIIGDV 106 (148)
T ss_dssp HHHHHHTTTGGGTCBSCT---------T------------------------------------------CCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCC---------C------------------------------------------CCHHHHHHHH
T ss_conf 665788850889987526---------4------------------------------------------2010365789
Q ss_pred HHHHHHHHHHCCCHHH--HHHHH
Q ss_conf 9998878644467567--99999
Q 000384 1187 AEALIGAYYVGGGLIA--ALYMM 1207 (1590)
Q Consensus 1187 vEAliGA~~~~~G~~~--a~~~~ 1207 (1590)
|||+|||+|+|+|.+. +.+++
T Consensus 107 ~EAiiGAiylD~g~~~~~~~~~i 129 (148)
T d2nuga1 107 FEALWAAVYIDSGRDANFTRELF 129 (148)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 99988776422687799999999
|
| >d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: DNA helicase UvsW domain: DNA helicase UvsW species: Bacteriophage T4 [TaxId: 10665]
Probab=99.86 E-value=1.6e-20 Score=167.79 Aligned_cols=154 Identities=25% Similarity=0.292 Sum_probs=113.4
Q ss_pred CCCCCCCHHHHHHHHHHHC-CCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHCC-
Q ss_conf 8799994889999999724-89899908998399999999999999977079972999993575559999999986169-
Q 000384 41 SINFIPRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTD- 118 (1590)
Q Consensus 41 ~~~~~pR~yQ~e~le~~l~-~n~Ii~~~TGsGKTliaillI~~~l~~~~~~~~~~~vlvLvPtv~Lv~Qq~~~i~~~~~- 118 (1590)
...++||+||.+++..+++ +++++.+|||+|||+++.++++.+.. . ...+++|+||+++|+.||++++.++..
T Consensus 109 ~~~~~~rdyQ~~av~~~l~~~~~il~~pTGsGKT~i~~~i~~~~~~----~-~~~k~Liivp~~~Lv~Q~~~~f~~~~~~ 183 (282)
T d1rifa_ 109 NKRIEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLE----N-YEGKILIIVPTTALTTQMADDFVDYRLF 183 (282)
T ss_dssp TEECCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHH----H-CSSEEEEECSSHHHHHHHHHHHHHHTSC
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH----C-CCCEEEEEECCCHHHHHHHHHHHHHHCC
T ss_conf 8746564677787799985497216887115830788999998653----2-5632899976722578999999875036
Q ss_pred --CCEEEEECCCCCCCCCHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHC
Q ss_conf --835898668887730227889830789699985999999997217676542189984641003899089999999730
Q 000384 119 --FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHK 196 (1590)
Q Consensus 119 --~~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~Ll~~L~~~~~~l~~i~LIIiDEaH~~~~~~~~~~imk~~~~~ 196 (1590)
..+..+.++...+. .......|+++|.|.+.+.... .++++++||+|||||+.+. .+..+|. .
T Consensus 184 ~~~~~~~~~~g~~~~~-------~~~~~~~i~i~t~qs~~~~~~~---~~~~f~~VIvDEaH~~~a~-~~~~il~----~ 248 (282)
T d1rifa_ 184 SHAMIKKIGGGASKDD-------KYKNDAPVVVGTWQTVVKQPKE---WFSQFGMMMNDECHLATGK-SISSIIS----G 248 (282)
T ss_dssp CGGGEEECSTTCSSTT-------CCCTTCSEEEECHHHHTTSCGG---GGGGEEEEEEETGGGCCHH-HHHHHTT----T
T ss_pred CCCCCEEECCEECCCC-------CCCCCCEEEEEEEEHHHHHCCC---CCCCCCEEEEECCCCCCCH-HHHHHHH----H
T ss_conf 5345303402002565-------2332326999864032220210---0578879999899788832-0999997----4
Q ss_pred CCCCCCEEEEECCCCCCC
Q ss_conf 899980999805577567
Q 000384 197 SDNKPKVFGMTASPVVRK 214 (1590)
Q Consensus 197 ~~~~priLgLTATP~~~~ 214 (1590)
..+.+.++||||||...+
T Consensus 249 ~~~~~~rlGlTaT~~~~~ 266 (282)
T d1rifa_ 249 LNNCMFKFGLSGSLRDGK 266 (282)
T ss_dssp CTTCCEEEEECSSCCTTS
T ss_pred CCCCCEEEEEEEECCCCC
T ss_conf 618896999996159987
|
| >d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.84 E-value=1.2e-19 Score=161.04 Aligned_cols=144 Identities=24% Similarity=0.285 Sum_probs=112.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHC-CCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHH
Q ss_conf 999988799994889999999724-8989990899839999999999999997707997299999357555999999998
Q 000384 36 SSSTNSINFIPRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIR 114 (1590)
Q Consensus 36 ~~~~~~~~~~pR~yQ~e~le~~l~-~n~Ii~~~TGsGKTliaillI~~~l~~~~~~~~~~~vlvLvPtv~Lv~Qq~~~i~ 114 (1590)
........++||+||.++++.+++ +++++.+|||+|||++++.++.++ +++++|+||+++|+.||.++++
T Consensus 61 ~~~~~~~~~~Lr~yQ~eav~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~---------~~~~Liv~p~~~L~~q~~~~~~ 131 (206)
T d2fz4a1 61 PTPYFDAEISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL---------STPTLIVVPTLALAEQWKERLG 131 (206)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS---------CSCEEEEESSHHHHHHHHHHHG
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCEEHHHHHHHHH---------CCCEEEEECCCCHHHHHHHHHH
T ss_conf 7877789998499999999999967990999578998264377678774---------6724578724224899999998
Q ss_pred HHCCCCEEEEECCCCCCCCCHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHH
Q ss_conf 61698358986688877302278898307896999859999999972176765421899846410038990899999997
Q 000384 115 VHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFY 194 (1590)
Q Consensus 115 ~~~~~~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~Ll~~L~~~~~~l~~i~LIIiDEaH~~~~~~~~~~imk~~~ 194 (1590)
.+....++.+.|... ....|+++|++.+....... ..++++||+|||||+... .+..+++.
T Consensus 132 ~~~~~~~~~~~~~~~-------------~~~~i~i~t~~~~~~~~~~~---~~~~~lvIiDEaH~~~a~-~~~~i~~~-- 192 (206)
T d2fz4a1 132 IFGEEYVGEFSGRIK-------------ELKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEVHHLPAE-SYVQIAQM-- 192 (206)
T ss_dssp GGCGGGEEEESSSCB-------------CCCSEEEEEHHHHHHTHHHH---TTTCSEEEEECSSCCCTT-THHHHHHT--
T ss_pred HHCCCCHHHCCCCCC-------------CCCCCCCCEEHHHHHHHHHH---CCCCCEEEEECCEECCCH-HHHHHHHC--
T ss_conf 615511110146532-------------10210012322555536765---775779999898217837-99999850--
Q ss_pred HCCCCCCCEEEEECCC
Q ss_conf 3089998099980557
Q 000384 195 HKSDNKPKVFGMTASP 210 (1590)
Q Consensus 195 ~~~~~~priLgLTATP 210 (1590)
...+++||||||+
T Consensus 193 ---~~~~~~lgLTATl 205 (206)
T d2fz4a1 193 ---SIAPFRLGLTATF 205 (206)
T ss_dssp ---CCCSEEEEEEESC
T ss_pred ---CCCCCEEEEECCC
T ss_conf ---6898489995589
|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.84 E-value=3.5e-19 Score=157.52 Aligned_cols=130 Identities=25% Similarity=0.372 Sum_probs=110.5
Q ss_pred CCHHHHHHHHHHHHC-CCCCCCEEEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCC--CCCCCHHHHHHHHHHHC
Q ss_conf 999999999999840-999981899998009899999999862999987069999757888--79889999999999830
Q 000384 395 ISTKLHELLQLFLSF-GKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTS--VDALTPKVQKEVLESFR 471 (1590)
Q Consensus 395 ~s~Kv~~L~~lL~~~-~~~~~~~~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~l~G~~~~--~~~l~~~~q~~vl~~Fr 471 (1590)
.++|+..|.++|... ....+.++||||+++.++..+++.|.. .++++..++|.... ..+++.++|.+++++|+
T Consensus 141 ~~pK~~~l~~~l~~~~~~~~~~k~iiF~~~~~~~~~~~~~L~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~F~ 216 (286)
T d1wp9a2 141 DHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVK----DGIKAKRFVGQASKENDRGLSQREQKLILDEFA 216 (286)
T ss_dssp SCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHH----TTCCEEEECCSSCC-------CCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHH----CCCCEEEEECCCCCCCCCHHCHHHHHHHHHHHH
T ss_conf 8828999999999999718998489996718867999999997----699648860566433420102288999999987
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHCCCCCCCCEE-EEEECC
Q ss_conf 898219997243223545788638998069999779999721123348629-997312
Q 000384 472 GGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQF-ILMLER 528 (1590)
Q Consensus 472 ~g~~niLVaTsvleeGIDIp~~~~VI~fD~p~s~~syiQr~GRArR~gs~~-i~lv~~ 528 (1590)
+|++++||||+++++|||+|+|++||+||+|+|+..|+||+||+||.+++. ++|+..
T Consensus 217 ~g~~~vLv~T~~~~~Gld~~~~~~Vi~~d~~~~~~~~~Qr~GR~gR~~~~~~~~l~~~ 274 (286)
T d1wp9a2 217 RGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMPGRVIILMAK 274 (286)
T ss_dssp HTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCCSEEEEEEET
T ss_pred CCCCCEEEECCCEECCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEEEEC
T ss_conf 6998299971440203668889989995899898999999985787999889999838
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.83 E-value=5.6e-19 Score=156.02 Aligned_cols=169 Identities=18% Similarity=0.251 Sum_probs=126.1
Q ss_pred CCCCHHHHHHHHHHH-CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHCC--CC
Q ss_conf 999488999999972-489899908998399999999999999977079972999993575559999999986169--83
Q 000384 44 FIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTD--FE 120 (1590)
Q Consensus 44 ~~pR~yQ~e~le~~l-~~n~Ii~~~TGsGKTliaillI~~~l~~~~~~~~~~~vlvLvPtv~Lv~Qq~~~i~~~~~--~~ 120 (1590)
-+|++||.++++.++ ++|+|+++|||+|||++|.+++...+. ..+++++++|+++|+.|+.+.++.+.+ .+
T Consensus 24 ~~l~~~Q~~ai~~l~~~~~~il~apTGsGKT~~a~l~i~~~~~------~~~~vl~l~P~~~L~~q~~~~~~~~~~~~~~ 97 (202)
T d2p6ra3 24 EELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAI------KGGKSLYVVPLRALAGEKYESFKKWEKIGLR 97 (202)
T ss_dssp -CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHH------TTCCEEEEESSHHHHHHHHHHHTTTTTTTCC
T ss_pred CCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHH------CCCCCEEECCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 9999999999999984999899868998511789999998762------2576033166278999999999998632443
Q ss_pred EEEEECCCCCCCCCHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCC---HHHHHHHHHHCC
Q ss_conf 58986688877302278898307896999859999999972176765421899846410038990---899999997308
Q 000384 121 VEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHP---YTKIMKEFYHKS 197 (1590)
Q Consensus 121 v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~Ll~~L~~~~~~l~~i~LIIiDEaH~~~~~~~---~~~imk~~~~~~ 197 (1590)
+....|+..... .......|+++|++.+...+.+....+.++++||+||||++..+.. +..++.. ....
T Consensus 98 v~~~~~~~~~~~-------~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~ii~DE~h~~~~~~r~~~~~~~l~~-i~~~ 169 (202)
T d2p6ra3 98 IGISTGDYESRD-------EHLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTK-MRRM 169 (202)
T ss_dssp EEEECSSCBCCS-------SCSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHH-HHHH
T ss_pred CEEECCCCCCCC-------CCCCCCCEEEECCHHHHHHHHCCCHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHH-HHHC
T ss_conf 100026743322-------12232212540108998887511001103222246587775355431379999999-9865
Q ss_pred CCCCCEEEEECCCCCCCCCCCHHCHHHHHHHHHHHCCCEEEE
Q ss_conf 999809998055775678888000999999999651980673
Q 000384 198 DNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFT 239 (1590)
Q Consensus 198 ~~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~s~i~t 239 (1590)
.+..++++||||..+ ...+...|++.++.
T Consensus 170 ~~~~~~l~lSATl~n-------------~~~~~~~l~~~~~~ 198 (202)
T d2p6ra3 170 NKALRVIGLSATAPN-------------VTEIAEWLDADYYV 198 (202)
T ss_dssp CTTCEEEEEECCCTT-------------HHHHHHHTTCEEEE
T ss_pred CCCCCEEEECCCCCC-------------HHHHHHHCCCCEEE
T ss_conf 999838998178875-------------99999870898211
|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.82 E-value=2.6e-19 Score=158.56 Aligned_cols=159 Identities=22% Similarity=0.296 Sum_probs=129.1
Q ss_pred CCCCCHHHHHHHHHHHC--CCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHH---C
Q ss_conf 99994889999999724--898999089983999999999999999770799729999935755599999999861---6
Q 000384 43 NFIPRIYQLKVFEVAKR--RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVH---T 117 (1590)
Q Consensus 43 ~~~pR~yQ~e~le~~l~--~n~Ii~~~TGsGKTliaillI~~~l~~~~~~~~~~~vlvLvPtv~Lv~Qq~~~i~~~---~ 117 (1590)
...|++.|.++++.++. .|+|+.++||+|||+++.+++.+... ...+..+++++||++|+.|+++.++.. .
T Consensus 24 ~~~pt~iQ~~~ip~~l~g~~d~iv~a~TGsGKT~~~~l~~~~~~~----~~~~~~~lil~pt~~l~~q~~~~~~~~~~~~ 99 (208)
T d1hv8a1 24 FEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVN----ENNGIEAIILTPTRELAIQVADEIESLKGNK 99 (208)
T ss_dssp CCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSC----SSSSCCEEEECSCHHHHHHHHHHHHHHHCSS
T ss_pred CCCCCHHHHHHHHHHHCCCCCEEEECHHCCCCCCEEECCCCCCCC----CCCCCCEEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 999999999999999849997464410034444002033321111----2467506998403332203345566650367
Q ss_pred CCCEEEEECCCCCCCCCHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 98358986688877302278898307896999859999999972176765421899846410038990899999997308
Q 000384 118 DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS 197 (1590)
Q Consensus 118 ~~~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~Ll~~L~~~~~~l~~i~LIIiDEaH~~~~~~~~~~imk~~~~~~ 197 (1590)
+.++..++|+..... ....+.+++|+|+||+.|.+++.++.+.+++++++|+||||++.+.+.+ ..+...+...
T Consensus 100 ~~~v~~~~g~~~~~~-----~~~~l~~~~IlV~TP~~l~~~l~~~~~~~~~l~~lViDEad~l~~~~~~-~~i~~I~~~~ 173 (208)
T d1hv8a1 100 NLKIAKIYGGKAIYP-----QIKALKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFI-KDVEKILNAC 173 (208)
T ss_dssp CCCEEEECTTSCHHH-----HHHHHHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTTTTH-HHHHHHHHTS
T ss_pred CEEEEEEECCCCHHH-----HHHHCCCCCEEEECHHHHHHHHHCCCCCCCCCCEEEEECHHHHHCCCCH-HHHHHHHHHC
T ss_conf 707998528978699-----9986089999998869999999769977666869999884876108871-7799999858
Q ss_pred CCCCCEEEEECCCC
Q ss_conf 99980999805577
Q 000384 198 DNKPKVFGMTASPV 211 (1590)
Q Consensus 198 ~~~priLgLTATP~ 211 (1590)
+...+++++|||..
T Consensus 174 ~~~~Q~i~~SAT~~ 187 (208)
T d1hv8a1 174 NKDKRILLFSATMP 187 (208)
T ss_dssp CSSCEEEEECSSCC
T ss_pred CCCCEEEEEECCCC
T ss_conf 99885999970279
|
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=4.1e-19 Score=157.05 Aligned_cols=163 Identities=19% Similarity=0.184 Sum_probs=133.8
Q ss_pred CCCCCCCHHHHHHHHHHH-CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHH---
Q ss_conf 879999488999999972-4898999089983999999999999999770799729999935755599999999861---
Q 000384 41 SINFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVH--- 116 (1590)
Q Consensus 41 ~~~~~pR~yQ~e~le~~l-~~n~Ii~~~TGsGKTliaillI~~~l~~~~~~~~~~~vlvLvPtv~Lv~Qq~~~i~~~--- 116 (1590)
.....|++.|.++++.++ ++|+++.++||||||+++++++.+.+. ......++++++||++|+.|.+++++..
T Consensus 35 ~g~~~pt~IQ~~aIp~il~g~dvi~~a~TGSGKTlayllPil~~l~---~~~~~~~~lil~PtreLa~Qi~~~~~~l~~~ 111 (222)
T d2j0sa1 35 YGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLD---IQVRETQALILAPTRELAVQIQKGLLALGDY 111 (222)
T ss_dssp HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCC---TTSCSCCEEEECSSHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCHHHHHHHHHHHCCCCEEEECCCCHHHHHHHCCCCCCCCC---CCCCCCEEEEECCHHHHHHHHHHHHHHHHCC
T ss_conf 7999999999999999987998699757434145440454011003---3346742577555288889999999998475
Q ss_pred CCCCEEEEECCCCCCCCCHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHC
Q ss_conf 69835898668887730227889830789699985999999997217676542189984641003899089999999730
Q 000384 117 TDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHK 196 (1590)
Q Consensus 117 ~~~~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~Ll~~L~~~~~~l~~i~LIIiDEaH~~~~~~~~~~imk~~~~~ 196 (1590)
.++++..++|+...+... .....+++|+|+||++|.+.+.++.+.++++.++|+||||++... .+...+...+..
T Consensus 112 ~~i~~~~~~g~~~~~~~~----~~l~~~~~Ilv~TPgrl~~~~~~~~~~~~~l~~lVlDEaD~ll~~-~f~~~i~~I~~~ 186 (222)
T d2j0sa1 112 MNVQCHACIGGTNVGEDI----RKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNK-GFKEQIYDVYRY 186 (222)
T ss_dssp TTCCEEEECTTSCHHHHH----HHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHTST-TTHHHHHHHHTT
T ss_pred CCEEEEEEEECCCCHHHH----HHHCCCCEEEECCCCCHHHCCCCCCCCCCCCEEEEECCHHHHHHC-CCHHHHHHHHHH
T ss_conf 634588875112102467----875148738867987577612001034442303554224676525-739999999996
Q ss_pred CCCCCCEEEEECCCC
Q ss_conf 899980999805577
Q 000384 197 SDNKPKVFGMTASPV 211 (1590)
Q Consensus 197 ~~~~priLgLTATP~ 211 (1590)
.+...+++.+|||..
T Consensus 187 l~~~~Q~ilfSAT~~ 201 (222)
T d2j0sa1 187 LPPATQVVLISATLP 201 (222)
T ss_dssp SCTTCEEEEEESCCC
T ss_pred CCCCCEEEEEEEECC
T ss_conf 898887999997288
|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=7.3e-19 Score=155.12 Aligned_cols=164 Identities=16% Similarity=0.195 Sum_probs=131.9
Q ss_pred CCCCCCHHHHHHHHHHH-CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHCC--
Q ss_conf 79999488999999972-489899908998399999999999999977079972999993575559999999986169--
Q 000384 42 INFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTD-- 118 (1590)
Q Consensus 42 ~~~~pR~yQ~e~le~~l-~~n~Ii~~~TGsGKTliaillI~~~l~~~~~~~~~~~vlvLvPtv~Lv~Qq~~~i~~~~~-- 118 (1590)
....|++.|.++++.++ ++|+++.++||||||+++++++.+... ....+..+++++||++|+.|+.+.++....
T Consensus 20 g~~~pt~iQ~~aip~il~g~dvl~~A~TGsGKTla~~lp~l~~~~---~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~ 96 (207)
T d1t6na_ 20 GFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLE---PVTGQVSVLVMCHTRELAFQISKEYERFSKYM 96 (207)
T ss_dssp TCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCC---CCTTCCCEEEECSCHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEEEC---CCCCCCEEEEEECCCHHHHHHHHHHHHHHHHC
T ss_conf 999999999999999984998577722333212001344032102---46778628998512203678999999998438
Q ss_pred --CCEEEEECCCCCCCCCHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHC
Q ss_conf --835898668887730227889830789699985999999997217676542189984641003899089999999730
Q 000384 119 --FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHK 196 (1590)
Q Consensus 119 --~~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~Ll~~L~~~~~~l~~i~LIIiDEaH~~~~~~~~~~imk~~~~~ 196 (1590)
+++..++|+..... +........++|+|+||+.+.+++..+.+.++++.++|+||||++.....+...++..+..
T Consensus 97 ~~~~~~~~~g~~~~~~---~~~~l~~~~~~ilI~TP~rl~~~~~~~~~~l~~l~~lVlDEaD~ll~~~~~~~~i~~I~~~ 173 (207)
T d1t6na_ 97 PNVKVAVFFGGLSIKK---DEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRM 173 (207)
T ss_dssp TTCCEEEESCCSCHHH---HHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCHHH---HHHHHHHCCCCEEEECCCHHHHHCCCCCEECCCCCEEEHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 8751678845654889---9999873689989908546432025882554303034023444454137859999999974
Q ss_pred CCCCCCEEEEECCCC
Q ss_conf 899980999805577
Q 000384 197 SDNKPKVFGMTASPV 211 (1590)
Q Consensus 197 ~~~~priLgLTATP~ 211 (1590)
.+...+++.+|||..
T Consensus 174 ~~~~~Q~il~SAT~~ 188 (207)
T d1t6na_ 174 TPHEKQVMMFSATLS 188 (207)
T ss_dssp SCSSSEEEEEESCCC
T ss_pred CCCCCEEEEEEEECC
T ss_conf 889887999940088
|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=1.6e-18 Score=152.55 Aligned_cols=163 Identities=19% Similarity=0.220 Sum_probs=130.7
Q ss_pred CCCCCCHHHHHHHHHHH-CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHC---
Q ss_conf 79999488999999972-48989990899839999999999999997707997299999357555999999998616---
Q 000384 42 INFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT--- 117 (1590)
Q Consensus 42 ~~~~pR~yQ~e~le~~l-~~n~Ii~~~TGsGKTliaillI~~~l~~~~~~~~~~~vlvLvPtv~Lv~Qq~~~i~~~~--- 117 (1590)
....|++.|.++++.++ ++|+++.++||||||+++++++.+.+. ......++++++||++|+.|.++.++...
T Consensus 31 g~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKTlayllp~l~~i~---~~~~~~~alil~Pt~eL~~Q~~~~~~~~~~~~ 107 (218)
T d2g9na1 31 GFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIE---LDLKATQALVLAPTRELAQQIQKVVMALGDYM 107 (218)
T ss_dssp TCCSCCHHHHHHHHHHHHTCCEEEECCTTSSHHHHHHHHHHHHCC---TTCCSCCEEEECSSHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHEEC---CCCCCCCEEEECCCCHHHHHHHHHHHHHCCCC
T ss_conf 999999999999999976998899725625445543310222000---36667518998245112356777776512443
Q ss_pred CCCEEEEECCCCCCCCCHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 98358986688877302278898307896999859999999972176765421899846410038990899999997308
Q 000384 118 DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS 197 (1590)
Q Consensus 118 ~~~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~Ll~~L~~~~~~l~~i~LIIiDEaH~~~~~~~~~~imk~~~~~~ 197 (1590)
+..+..+.++....... -......++|+|+||+.+.+++..+...++++.++|+||||++.+. .+...+...+...
T Consensus 108 ~~~~~~~~~~~~~~~~~---~~~~~~~~~IvV~TP~rl~~~l~~~~~~~~~l~~lVlDEaD~ll~~-~f~~~~~~Il~~~ 183 (218)
T d2g9na1 108 GASCHACIGGTNVRAEV---QKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSR-GFKDQIYDIFQKL 183 (218)
T ss_dssp TCCEEEECC--CCCSTT---TSSSSCCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHHHT-TCHHHHHHHHHHS
T ss_pred CEEEEEEECCCCHHHHH---HHHHCCCCEEEEECCHHHHHHHHCCCCCCCCCEEEEEEECCHHHCC-CHHHHHHHHHHHC
T ss_conf 21687630245306778---8876488779996781577788628832465348986402102127-6089999999968
Q ss_pred CCCCCEEEEECCCC
Q ss_conf 99980999805577
Q 000384 198 DNKPKVFGMTASPV 211 (1590)
Q Consensus 198 ~~~priLgLTATP~ 211 (1590)
+...+++.+|||..
T Consensus 184 ~~~~Q~il~SAT~~ 197 (218)
T d2g9na1 184 NSNTQVVLLSATMP 197 (218)
T ss_dssp CTTCEEEEEESCCC
T ss_pred CCCCEEEEEEECCC
T ss_conf 99986999980599
|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEAD box RNA helicase rck/p54 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=2.6e-18 Score=150.99 Aligned_cols=162 Identities=18% Similarity=0.193 Sum_probs=130.4
Q ss_pred CCCCCCHHHHHHHHHHH-CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHC---
Q ss_conf 79999488999999972-48989990899839999999999999997707997299999357555999999998616---
Q 000384 42 INFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT--- 117 (1590)
Q Consensus 42 ~~~~pR~yQ~e~le~~l-~~n~Ii~~~TGsGKTliaillI~~~l~~~~~~~~~~~vlvLvPtv~Lv~Qq~~~i~~~~--- 117 (1590)
....|++.|.++++.++ ++|+++.++||||||+++++++.+.+. ....+..+++++|+++|+.|.++.+....
T Consensus 22 g~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKTlayllP~l~~~~---~~~~~~~~lil~pt~el~~q~~~~~~~~~~~~ 98 (206)
T d1veca_ 22 GWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLD---LKKDNIQAMVIVPTRELALQVSQICIQVSKHM 98 (206)
T ss_dssp TCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCC---TTSCSCCEEEECSCHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHCCC---CCCCCCCEEEEEECCHHHHHHHHHHHHHHHCC
T ss_conf 999999999999999986998874436740011212464132021---02567524998403016689999999875115
Q ss_pred -CCCEEEEECCCCCCCCCHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHC
Q ss_conf -9835898668887730227889830789699985999999997217676542189984641003899089999999730
Q 000384 118 -DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHK 196 (1590)
Q Consensus 118 -~~~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~Ll~~L~~~~~~l~~i~LIIiDEaH~~~~~~~~~~imk~~~~~ 196 (1590)
+..+....|+.... .........++|+|+||+++.+.+..+.+.++++.++|+||||.+.+. .|...+...+..
T Consensus 99 ~~~~~~~~~g~~~~~----~~~~~l~~~~~ivv~TPgrl~~~~~~~~~~~~~l~~lVlDEaD~ll~~-~f~~~i~~I~~~ 173 (206)
T d1veca_ 99 GGAKVMATTGGTNLR----DDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQ-DFVQIMEDIILT 173 (206)
T ss_dssp SSCCEEEECSSSCHH----HHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTST-TTHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHH----HHHHHHHHCCCEEEECCCCCCCCCCCHHCCCCCCCEEEEECCCCCCCC-CHHHHHHHHHHH
T ss_conf 676421236774088----899988751670894796331123311000155406998414200112-229999999986
Q ss_pred CCCCCCEEEEECCCC
Q ss_conf 899980999805577
Q 000384 197 SDNKPKVFGMTASPV 211 (1590)
Q Consensus 197 ~~~~priLgLTATP~ 211 (1590)
.+...+++.+|||.-
T Consensus 174 ~~~~~Q~~l~SAT~~ 188 (206)
T d1veca_ 174 LPKNRQILLYSATFP 188 (206)
T ss_dssp SCTTCEEEEEESCCC
T ss_pred CCCCCEEEEEEECCC
T ss_conf 899887999994499
|
| >d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.79 E-value=2.5e-18 Score=151.11 Aligned_cols=124 Identities=25% Similarity=0.448 Sum_probs=110.1
Q ss_pred CHHHHHHHHHHHHCCCCCCCEEEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 99999999999840999981899998009899999999862999987069999757888798899999999998308982
Q 000384 396 STKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKV 475 (1590)
Q Consensus 396 s~Kv~~L~~lL~~~~~~~~~~~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~l~~~~q~~vl~~Fr~g~~ 475 (1590)
..|+..|.+++.... ..++||||+++.++..++..|.. .++.+..+||. ++.++|..+++.|++|+.
T Consensus 17 ~~K~~~L~~ll~~~~---~~k~iVF~~~~~~~~~l~~~L~~----~g~~~~~~h~~------~~~~~r~~~~~~f~~~~~ 83 (171)
T d1s2ma2 17 RQKLHCLNTLFSKLQ---INQAIIFCNSTNRVELLAKKITD----LGYSCYYSHAR------MKQQERNKVFHEFRQGKV 83 (171)
T ss_dssp GGHHHHHHHHHHHSC---CSEEEEECSSHHHHHHHHHHHHH----HTCCEEEECTT------SCHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHCC---CCCEEEEEEEEEHHHHHHHHHHC----CCCCCCCCCCC------CCHHHHHHHHHHCCCCCC
T ss_conf 999999999998489---87659997224135676776501----33443334333------211456655321136863
Q ss_pred EEEEECCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHCCCCCCCCE--EEEEECCCHHH
Q ss_conf 1999724322354578863899806999977999972112334862--99973122377
Q 000384 476 NLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQ--FILMLERSERS 532 (1590)
Q Consensus 476 niLVaTsvleeGIDIp~~~~VI~fD~p~s~~syiQr~GRArR~gs~--~i~lv~~~E~~ 532 (1590)
++||||+++++|+|+|.|++||+||+|+++.+|+||.||++|.|.. .+.++.+.|..
T Consensus 84 ~ilv~Td~~~~Gid~~~v~~VI~~d~p~~~~~y~qr~GR~gR~g~~g~~i~~v~~~e~~ 142 (171)
T d1s2ma2 84 RTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRF 142 (171)
T ss_dssp SEEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHH
T ss_pred CCCCCHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEEEECHHHHH
T ss_conf 11012017654104662489996487602777877755314179961799985789999
|
| >d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=99.79 E-value=2.9e-18 Score=150.60 Aligned_cols=123 Identities=21% Similarity=0.377 Sum_probs=109.0
Q ss_pred CHHHHHHHHHHHHCCCCCCCEEEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 99999999999840999981899998009899999999862999987069999757888798899999999998308982
Q 000384 396 STKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKV 475 (1590)
Q Consensus 396 s~Kv~~L~~lL~~~~~~~~~~~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~l~~~~q~~vl~~Fr~g~~ 475 (1590)
..|+..|++++.... +.++||||+++..+..|+..|.. .++.+..+||. ++..+|.++++.|++|++
T Consensus 15 ~~k~~~L~~~l~~~~---~~~~IIF~~t~~~~~~l~~~l~~----~~~~~~~~h~~------~~~~~r~~~~~~f~~g~~ 81 (200)
T d1oywa3 15 FKPLDQLMRYVQEQR---GKSGIIYCNSRAKVEDTAARLQS----KGISAAAYHAG------LENNVRADVQEKFQRDDL 81 (200)
T ss_dssp SSHHHHHHHHHHHTT---TCCEEEECSSHHHHHHHHHHHHH----TTCCEEEECTT------SCHHHHHHHHHHHHTTSC
T ss_pred CCHHHHHHHHHHHCC---CCCEEEEEEEEHHHHHHHHHHCC----CCCEEEEECCC------CCHHHHHHHHHHHHCCCC
T ss_conf 768999999998569---99889998223116776443244----78535775388------717778999988741343
Q ss_pred EEEEECCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHCCCCCCCCE--EEEEECCCHH
Q ss_conf 1999724322354578863899806999977999972112334862--9997312237
Q 000384 476 NLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQ--FILMLERSER 531 (1590)
Q Consensus 476 niLVaTsvleeGIDIp~~~~VI~fD~p~s~~syiQr~GRArR~gs~--~i~lv~~~E~ 531 (1590)
++||||+++++|||+|++++||+||+|.++..|+||.|||+|.|.. .++++.+.|.
T Consensus 82 ~ilvaTd~~~~GiD~p~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~ai~~~~~~d~ 139 (200)
T d1oywa3 82 QIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADM 139 (200)
T ss_dssp SEEEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHH
T ss_pred EEEEECCHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCHHHH
T ss_conf 0787402345316887888999877751168898875453137777258775178898
|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.79 E-value=1.2e-18 Score=153.43 Aligned_cols=122 Identities=22% Similarity=0.458 Sum_probs=108.1
Q ss_pred CHHHHHHHHHHHHCCCCCCCEEEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 99999999999840999981899998009899999999862999987069999757888798899999999998308982
Q 000384 396 STKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKV 475 (1590)
Q Consensus 396 s~Kv~~L~~lL~~~~~~~~~~~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~l~~~~q~~vl~~Fr~g~~ 475 (1590)
.+|+..|.+++.. .+.++||||+++.++..+++.|.. .++.+..++|. ++..+|.+++++|++|+.
T Consensus 14 ~~K~~~L~~ll~~----~~~k~IIF~~s~~~~~~l~~~L~~----~g~~~~~~~~~------~~~~~r~~~~~~f~~~~~ 79 (155)
T d1hv8a2 14 NERFEALCRLLKN----KEFYGLVFCKTKRDTKELASMLRD----IGFKAGAIHGD------LSQSQREKVIRLFKQKKI 79 (155)
T ss_dssp GGHHHHHHHHHCS----TTCCEEEECSSHHHHHHHHHHHHH----TTCCEEEECSS------SCHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHCC----CCCCEEEEECCHHHHHHHHHHHCC----CCCCCCCCCCC------CHHHHHHHHHHHHHCCCC
T ss_conf 9999999999726----999899997944899888765233----43222233331------001134566655412111
Q ss_pred EEEEECCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHCCCCCCCCE--EEEEECCCHH
Q ss_conf 1999724322354578863899806999977999972112334862--9997312237
Q 000384 476 NLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQ--FILMLERSER 531 (1590)
Q Consensus 476 niLVaTsvleeGIDIp~~~~VI~fD~p~s~~syiQr~GRArR~gs~--~i~lv~~~E~ 531 (1590)
++||||+++++|+|+|.|++||+||+|+++.+|+||.||++|.|+. .+.++.+.|.
T Consensus 80 ~ilv~T~~~~~Gid~~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~d~ 137 (155)
T d1hv8a2 80 RILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREY 137 (155)
T ss_dssp SEEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSH
T ss_pred EEEEEHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECHHHH
T ss_conf 2553036776543221276799964999999999887763747997369999866899
|
| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=99.79 E-value=1.2e-18 Score=153.61 Aligned_cols=121 Identities=21% Similarity=0.360 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHCCCCCCCEEEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCE
Q ss_conf 99999999998409999818999980098999999998629999870699997578887988999999999983089821
Q 000384 397 TKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVN 476 (1590)
Q Consensus 397 ~Kv~~L~~lL~~~~~~~~~~~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~l~~~~q~~vl~~Fr~g~~n 476 (1590)
.++..|+..+.... ..+.++||||+++..+..++..|.. .++.+.++||+ |++.+|.+++++|++|+++
T Consensus 15 ~qvd~ll~~i~~~~-~~~~~~iif~~~~~~~~~~~~~l~~----~g~~~~~~hg~------~~~~eR~~~l~~Fr~g~~~ 83 (181)
T d1t5la2 15 GQIDDLIGEIRERV-ERNERTLVTTLTKKMAEDLTDYLKE----AGIKVAYLHSE------IKTLERIEIIRDLRLGKYD 83 (181)
T ss_dssp THHHHHHHHHHHHH-HTTCEEEEECSSHHHHHHHHHHHHT----TTCCEEEECSS------CCHHHHHHHHHHHHHTSCS
T ss_pred CCHHHHHHHHHHHH-HCCCEEEEEEEHHHHHHHHHHHHHH----CCCCEEEECCC------CCHHHHHHHHHHHHCCCCC
T ss_conf 84999999999999-6298289996103466788887876----79404674178------6388999999999789988
Q ss_pred EEEECCCCCCCCCCCCCCEEEECCCCC-----CHHHHHHHHCCCCCCCCEEEEEECC
Q ss_conf 999724322354578863899806999-----9779999721123348629997312
Q 000384 477 LLFATDVIEEGMHVPNCSYVIRFDLPK-----TVSSYIQSRGRARQHNSQFILMLER 528 (1590)
Q Consensus 477 iLVaTsvleeGIDIp~~~~VI~fD~p~-----s~~syiQr~GRArR~gs~~i~lv~~ 528 (1590)
+||||+++++|||+|.+++||+||+|. +..+|+||.|||+|.|.+++++...
T Consensus 84 vLVaTdv~~rGiDip~v~~VI~~d~p~~~~~~s~~~yi~R~GRagR~g~~~~~~~~~ 140 (181)
T d1t5la2 84 VLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNANGHVIMYAD 140 (181)
T ss_dssp EEEESCCCSSSCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTTCEEEEECS
T ss_pred EEEEHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEECC
T ss_conf 897624777138999978899956996455435899999987624566745674021
|
| >d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=2.2e-18 Score=151.48 Aligned_cols=123 Identities=24% Similarity=0.453 Sum_probs=109.9
Q ss_pred CHHHHHHHHHHHHCCCCCCCEEEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 99999999999840999981899998009899999999862999987069999757888798899999999998308982
Q 000384 396 STKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKV 475 (1590)
Q Consensus 396 s~Kv~~L~~lL~~~~~~~~~~~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~l~~~~q~~vl~~Fr~g~~ 475 (1590)
..|+..|.+++.... ..++||||+++.++..++..|.. .++.+..+||. ++.++|.+++++|++|+.
T Consensus 19 ~~K~~~L~~ll~~~~---~~k~iiF~~~~~~~~~~~~~l~~----~~~~~~~~~~~------~~~~~r~~~~~~fk~g~~ 85 (168)
T d2j0sa2 19 EWKFDTLCDLYDTLT---ITQAVIFCNTKRKVDWLTEKMRE----ANFTVSSMHGD------MPQKERESIMKEFRSGAS 85 (168)
T ss_dssp THHHHHHHHHHHHHT---SSEEEEECSSHHHHHHHHHHHHH----TTCCCEEECTT------SCHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHCC---CCCEEEEEEEHHHHHHHHHHHHH----CCCCHHHHHHH------HHHHHHHHHHHHHHCCCC
T ss_conf 999999999998478---77639996058887888877663----04431333112------257899999999863884
Q ss_pred EEEEECCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHCCCCCCCCE--EEEEECCCHH
Q ss_conf 1999724322354578863899806999977999972112334862--9997312237
Q 000384 476 NLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQ--FILMLERSER 531 (1590)
Q Consensus 476 niLVaTsvleeGIDIp~~~~VI~fD~p~s~~syiQr~GRArR~gs~--~i~lv~~~E~ 531 (1590)
++||||+++++|+|+|.+++||+||+|++..+|+||.||++|.|.. .+.++.+.|.
T Consensus 86 ~iLv~Td~~~rGiDi~~v~~VIn~d~P~~~~~yihR~GR~gR~g~~G~~i~~~~~~d~ 143 (168)
T d2j0sa2 86 RVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDI 143 (168)
T ss_dssp CEEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGH
T ss_pred CEEECCCHHCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCEEEEEECHHHH
T ss_conf 0774144100565535765689933776787887661044526997479999778999
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.78 E-value=2.9e-18 Score=150.55 Aligned_cols=160 Identities=19% Similarity=0.194 Sum_probs=112.7
Q ss_pred CCCCCHHHHHHHHHHH-CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHC---C
Q ss_conf 9999488999999972-48989990899839999999999999997707997299999357555999999998616---9
Q 000384 43 NFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT---D 118 (1590)
Q Consensus 43 ~~~pR~yQ~e~le~~l-~~n~Ii~~~TGsGKTliaillI~~~l~~~~~~~~~~~vlvLvPtv~Lv~Qq~~~i~~~~---~ 118 (1590)
..+|+++|.++++.++ ++|+++.+|||+|||+++++++..... .+++++|++|+++|+.||+++++++. +
T Consensus 41 ~~~p~~~Q~~~i~~~l~g~~~~i~apTGsGKT~~~~~~~~~~~~------~~~rvliv~Pt~~La~Q~~~~l~~~~~~~~ 114 (237)
T d1gkub1 41 VGEPRAIQKMWAKRILRKESFAATAPTGVGKTSFGLAMSLFLAL------KGKRCYVIFPTSLLVIQAAETIRKYAEKAG 114 (237)
T ss_dssp TCSCCHHHHHHHHHHHTTCCEECCCCBTSCSHHHHHHHHHHHHT------TSCCEEEEESCHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH------HCCEEEEEECCHHHHHHHHHHHHHHHHHCC
T ss_conf 59998999999999977997799926897699999999999987------458389994449999999999999999849
Q ss_pred CCEEEEECC--CCCCCCCHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCH-HHHHHHH-H
Q ss_conf 835898668--88773022788983078969998599999999721767654218998464100389908-9999999-7
Q 000384 119 FEVEEYYGA--KGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPY-TKIMKEF-Y 194 (1590)
Q Consensus 119 ~~v~~~~G~--~~~d~~~~~~w~~~~~~~~VlV~T~q~Ll~~L~~~~~~l~~i~LIIiDEaH~~~~~~~~-~~imk~~-~ 194 (1590)
+++....+. .....+....+.....+.+|+|+||+.|.+ .+..+.++++||+||||++.+.+.. ...+... +
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Ilv~Tp~~l~~----~~~~~~~~~~vVvDE~d~~l~~~~~~~~~~~~~g~ 190 (237)
T d1gkub1 115 VGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSK----HYRELGHFDFIFVDDVDAILKASKNVDKLLHLLGF 190 (237)
T ss_dssp CSGGGSEEECCSSCCSHHHHHHHHSGGGCSEEEEEHHHHHH----CSTTSCCCSEEEESCHHHHHTSTHHHHHHHHHTTE
T ss_pred CCEEEEEEEEECCCCHHHHHHHHCCCCCCCEECCCHHHHHH----HHHHCCCCCEEEEECHHHHHHCCCCHHHHHHHCCC
T ss_conf 94699985542254123565554034444232268699997----54434778889999926664334214578886187
Q ss_pred -H-------CCCCCCCEEEEECCCCC
Q ss_conf -3-------08999809998055775
Q 000384 195 -H-------KSDNKPKVFGMTASPVV 212 (1590)
Q Consensus 195 -~-------~~~~~priLgLTATP~~ 212 (1590)
. ..+..++++++|||+..
T Consensus 191 ~~~~~~~~~~~~~~~~~i~~SAT~~~ 216 (237)
T d1gkub1 191 HYDLKTKSWVGEARGCLMVSTATAKK 216 (237)
T ss_dssp EEETTTTEEEECCSSEEEECCCCSCC
T ss_pred HHHHHHHHHHCCCCCEEEEEECCCCC
T ss_conf 39999998627888859999078994
|
| >d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.78 E-value=2.2e-18 Score=151.42 Aligned_cols=123 Identities=23% Similarity=0.418 Sum_probs=109.6
Q ss_pred CHHHHHHHHHHHHCCCCCCCEEEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 99999999999840999981899998009899999999862999987069999757888798899999999998308982
Q 000384 396 STKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKV 475 (1590)
Q Consensus 396 s~Kv~~L~~lL~~~~~~~~~~~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~l~~~~q~~vl~~Fr~g~~ 475 (1590)
..|+..|.+++.... ..++||||+++.++..+++.|.. .++.+..+||. |+..+|.++++.|+.|+.
T Consensus 12 e~K~~~L~~ll~~~~---~~k~iIF~~s~~~~~~l~~~L~~----~~~~~~~~~~~------~~~~~r~~~l~~f~~~~~ 78 (162)
T d1fuka_ 12 EYKYECLTDLYDSIS---VTQAVIFCNTRRKVEELTTKLRN----DKFTVSAIYSD------LPQQERDTIMKEFRSGSS 78 (162)
T ss_dssp GGHHHHHHHHHHHTT---CSCEEEEESSHHHHHHHHHHHHH----TTCCEEEECTT------SCHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHCC---CCCEEEEEEEECHHHHHHHHHHH----CCCEEEEECCC------CCHHHHHHHHHHHHHCCC
T ss_conf 789999999998489---88589999887069999988865----49559995167------752367789998764036
Q ss_pred EEEEECCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHCCCCCCCCE--EEEEECCCHH
Q ss_conf 1999724322354578863899806999977999972112334862--9997312237
Q 000384 476 NLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQ--FILMLERSER 531 (1590)
Q Consensus 476 niLVaTsvleeGIDIp~~~~VI~fD~p~s~~syiQr~GRArR~gs~--~i~lv~~~E~ 531 (1590)
++||||+++++|+|+|.+++||+||+|+++..|+||.||++|.|.. .+.++.+.|.
T Consensus 79 ~iLv~Tdv~~rGiDi~~v~~VI~~d~P~~~~~yihR~GR~gR~g~~g~~i~~~~~~d~ 136 (162)
T d1fuka_ 79 RILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDV 136 (162)
T ss_dssp SEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTH
T ss_pred CEEECCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCEEEEECCHHHH
T ss_conf 4565156234465577750899934514677887650144547986479998179999
|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.77 E-value=1.5e-17 Score=145.16 Aligned_cols=161 Identities=17% Similarity=0.209 Sum_probs=128.5
Q ss_pred CCCCCCHHHHHHHHHHH-CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHC---
Q ss_conf 79999488999999972-48989990899839999999999999997707997299999357555999999998616---
Q 000384 42 INFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT--- 117 (1590)
Q Consensus 42 ~~~~pR~yQ~e~le~~l-~~n~Ii~~~TGsGKTliaillI~~~l~~~~~~~~~~~vlvLvPtv~Lv~Qq~~~i~~~~--- 117 (1590)
....|++.|.++++.++ ++|+++.++||||||+++++++.+.+. ....+..+++++||++|+.|....+....
T Consensus 29 g~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~a~~lp~i~~l~---~~~~~~~~lil~pt~el~~q~~~~~~~~~~~~ 105 (212)
T d1qdea_ 29 GFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRID---TSVKAPQALMLAPTRELALQIQKVVMALAFHM 105 (212)
T ss_dssp TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCC---TTCCSCCEEEECSSHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHH---CCCCCCCEEEECCCHHHHHHHHHHHCCCCCCC
T ss_conf 999999999999999986998774456530100466766676650---36778614897044888666665400122233
Q ss_pred CCCEEEEECCCCCCCCCHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 98358986688877302278898307896999859999999972176765421899846410038990899999997308
Q 000384 118 DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS 197 (1590)
Q Consensus 118 ~~~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~Ll~~L~~~~~~l~~i~LIIiDEaH~~~~~~~~~~imk~~~~~~ 197 (1590)
...+....|+..... + .....+++|+|+||+.+.+.+..+.+.+.++.++|+||||.+.+. .+...+...+...
T Consensus 106 ~~~~~~~~~~~~~~~---~--~~~~~~~~IvI~TP~~l~~~~~~~~~~l~~l~~lVlDEad~lld~-~f~~~v~~I~~~~ 179 (212)
T d1qdea_ 106 DIKVHACIGGTSFVE---D--AEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSS-GFKEQIYQIFTLL 179 (212)
T ss_dssp CCCEEEECC---------------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHT-TCHHHHHHHHHHS
T ss_pred CCCEEEEEECCCHHH---H--HHHHCCCCEEEECCCCCCCCCCCCCEECCCCEEEEEHHHHHHCCC-CHHHHHHHHHHHC
T ss_conf 211136753266167---9--998469919997997552223467353686407753024453144-4399999999858
Q ss_pred CCCCCEEEEECCCC
Q ss_conf 99980999805577
Q 000384 198 DNKPKVFGMTASPV 211 (1590)
Q Consensus 198 ~~~priLgLTATP~ 211 (1590)
+...+++++|||..
T Consensus 180 ~~~~Q~vl~SAT~~ 193 (212)
T d1qdea_ 180 PPTTQVVLLSATMP 193 (212)
T ss_dssp CTTCEEEEEESSCC
T ss_pred CCCCEEEEEEEECC
T ss_conf 98886999986189
|
| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase VlgB species: Flatworm (Dugesia japonica) [TaxId: 6161]
Probab=99.77 E-value=4.5e-17 Score=141.51 Aligned_cols=169 Identities=21% Similarity=0.199 Sum_probs=130.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHH-CCCEEEEECCCCHHHHHHHHHHHHHHHHH------HHCCCCEEEEEEECCHHHHHHHH
Q ss_conf 998879999488999999972-48989990899839999999999999997------70799729999935755599999
Q 000384 38 STNSINFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAI------KSNGFKKLIIFLAPTVHLVHQQY 110 (1590)
Q Consensus 38 ~~~~~~~~pR~yQ~e~le~~l-~~n~Ii~~~TGsGKTliaillI~~~l~~~------~~~~~~~~vlvLvPtv~Lv~Qq~ 110 (1590)
........|.+.|.++++.++ ++|+++.++||+|||+++++++.+.+... ........+++|+||++|+.|++
T Consensus 36 L~~~g~~~pt~iQ~~~ip~il~g~dvvi~a~TGsGKTlayllp~l~~l~~~~~~~~~~~~~~~~~alil~pt~el~~q~~ 115 (238)
T d1wrba1 36 ILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQIL 115 (238)
T ss_dssp TTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHH
T ss_pred HHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCEEEHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCHHHHCCHH
T ss_conf 99879998989999983664279978998777777511319999999972221112456777836999535144301001
Q ss_pred HHHHHH---CCCCEEEEECCCCCCCCCHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCHH
Q ss_conf 999861---69835898668887730227889830789699985999999997217676542189984641003899089
Q 000384 111 DVIRVH---TDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYT 187 (1590)
Q Consensus 111 ~~i~~~---~~~~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~Ll~~L~~~~~~l~~i~LIIiDEaH~~~~~~~~~ 187 (1590)
+++... .++++..++|+..... ........++|+|+||+.|.+++..+.+.+.++.++|+||||++... .|.
T Consensus 116 ~~~~~~~~~~~~~~~~~~g~~~~~~----~~~~~~~~~~ivV~TP~~l~~~~~~~~~~l~~v~~lViDEaD~ll~~-~f~ 190 (238)
T d1wrba1 116 SESQKFSLNTPLRSCVVYGGADTHS----QIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDM-GFE 190 (238)
T ss_dssp HHHHHHHTTSSCCEEEECSSSCSHH----HHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHHHHHT-TCH
T ss_pred EEEEECCCCCCCEEEEEECCCHHHH----HHHHCCCCCCEEECCHHHHHHHHCCCCEECCCCCEEEEEHHHHHHHH-CCH
T ss_conf 0111003578827999944520357----77640368734406778877677269265266412442034455432-139
Q ss_pred HHHHHHHHCC----CCCCCEEEEECCCC
Q ss_conf 9999997308----99980999805577
Q 000384 188 KIMKEFYHKS----DNKPKVFGMTASPV 211 (1590)
Q Consensus 188 ~imk~~~~~~----~~~priLgLTATP~ 211 (1590)
..+....... ...++++.+|||.-
T Consensus 191 ~~i~~Il~~~~~~~~~~~Q~il~SAT~~ 218 (238)
T d1wrba1 191 PQIRKIIEESNMPSGINRQTLMFSATFP 218 (238)
T ss_dssp HHHHHHHHSSCCCCGGGCEEEEEESSCC
T ss_pred HHHHHHHHHHCCCCCCCCEEEEEEEECC
T ss_conf 9999999984389989988999963279
|
| >d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=4.4e-18 Score=149.22 Aligned_cols=120 Identities=15% Similarity=0.327 Sum_probs=108.5
Q ss_pred CHHHHHHHHHHHHCCCCCCCEEEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 99999999999840999981899998009899999999862999987069999757888798899999999998308982
Q 000384 396 STKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKV 475 (1590)
Q Consensus 396 s~Kv~~L~~lL~~~~~~~~~~~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~l~~~~q~~vl~~Fr~g~~ 475 (1590)
+.|...|.+++.... ..++||||+++.++..|++.|.. .++.+..+||. |+..+|.+++++|++|++
T Consensus 12 ~~K~~~L~~ll~~~~---~~k~iIF~~~~~~~~~l~~~L~~----~~~~~~~ihg~------~~~~~r~~~l~~F~~g~~ 78 (168)
T d1t5ia_ 12 NEKNRKLFDLLDVLE---FNQVVIFVKSVQRCIALAQLLVE----QNFPAIAIHRG------MPQEERLSRYQQFKDFQR 78 (168)
T ss_dssp GGHHHHHHHHHHHSC---CSSEEEECSSHHHHHHHHHHHHH----TTCCEEEECTT------SCHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHCC---CCEEEEEEEEEECCHHHHHHHCC----CCCCCCCCCCC------CCHHHHHHHHHHHCCCCC
T ss_conf 999999999998389---98199998034411013334301----24443211122------210222211221112221
Q ss_pred EEEEECCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHCCCCCCCCE--EEEEECC
Q ss_conf 1999724322354578863899806999977999972112334862--9997312
Q 000384 476 NLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQ--FILMLER 528 (1590)
Q Consensus 476 niLVaTsvleeGIDIp~~~~VI~fD~p~s~~syiQr~GRArR~gs~--~i~lv~~ 528 (1590)
++||||+++++|+|+|.|++||+||+|+++.+|+||.||++|.|++ .+.++.+
T Consensus 79 ~iLv~T~~~~~Gid~~~~~~vi~~~~p~~~~~yiqr~GR~gR~g~~g~~i~l~~~ 133 (168)
T d1t5ia_ 79 RILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSD 133 (168)
T ss_dssp SEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECS
T ss_pred EEEECCCCCCCHHHCCCCHHHHHHHCCCCHHHHHHHHHHCCCCCCCCEEEEEECC
T ss_conf 1441233011001204413443221132214576542231528985189999884
|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=99.75 E-value=1.1e-17 Score=146.22 Aligned_cols=157 Identities=14% Similarity=0.137 Sum_probs=111.2
Q ss_pred CCCCHHHHHHHHHHH-CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHCCCCEE
Q ss_conf 999488999999972-4898999089983999999999999999770799729999935755599999999861698358
Q 000384 44 FIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVE 122 (1590)
Q Consensus 44 ~~pR~yQ~e~le~~l-~~n~Ii~~~TGsGKTliaillI~~~l~~~~~~~~~~~vlvLvPtv~Lv~Qq~~~i~~~~~~~v~ 122 (1590)
-.+|+||.++++.++ ++|+++++|||+|||+++.+++.. ..+++++++|+++|+.|+.+.++.... ...
T Consensus 24 ~~~rp~Q~~ai~~~l~g~~vlv~apTGsGKT~~~~~~~~~---------~~~~~~~v~P~~~L~~q~~~~l~~~~~-~~~ 93 (206)
T d1oywa2 24 QQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALL---------LNGLTVVVSPLISLMKDQVDQLQANGV-AAA 93 (206)
T ss_dssp SSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHH---------SSSEEEEECSCHHHHHHHHHHHHHTTC-CEE
T ss_pred CCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHH---------CCCCEEEECCCHHHHHHHHHHHHHHCC-CCC
T ss_conf 9999899999999986998899867889975231202554---------267247862640666668999976356-653
Q ss_pred EEECCCCCCCCCHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCC-HHH---HHHHHHHCCC
Q ss_conf 986688877302278898307896999859999999972176765421899846410038990-899---9999973089
Q 000384 123 EYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHP-YTK---IMKEFYHKSD 198 (1590)
Q Consensus 123 ~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~Ll~~L~~~~~~l~~i~LIIiDEaH~~~~~~~-~~~---imk~~~~~~~ 198 (1590)
...+...................+|+++|++.+.....+......++.++|+||||++..+.. +.. .+..... ..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~~~~~~~~~~~~v~~lviDEaH~~~~~~~~~~~~~~~~~~l~~-~~ 172 (206)
T d1oywa2 94 CLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQ-RF 172 (206)
T ss_dssp EECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHH-HC
T ss_pred CCCCCCCCCCCHHHHHHHHCCCCEEEEEECHHHHCHHHCCCCHHHEEEEEEEEEEEEEECCCCCHHHHHHHHHHHHH-HC
T ss_conf 22111124520567788762884699970301100010242210022243000125650226650899999999997-58
Q ss_pred CCCCEEEEECCCC
Q ss_conf 9980999805577
Q 000384 199 NKPKVFGMTASPV 211 (1590)
Q Consensus 199 ~~priLgLTATP~ 211 (1590)
+..+++|||||+.
T Consensus 173 ~~~~ii~lSATl~ 185 (206)
T d1oywa2 173 PTLPFMALTATAD 185 (206)
T ss_dssp TTSCEEEEESCCC
T ss_pred CCCCEEEEEECCC
T ss_conf 9983599994899
|
| >d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Probab=99.74 E-value=2.1e-17 Score=144.03 Aligned_cols=127 Identities=19% Similarity=0.324 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHCCCCCCCEEEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEE
Q ss_conf 99999999984099998189999800989999999986299998706999975788879889999999999830898219
Q 000384 398 KLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNL 477 (1590)
Q Consensus 398 Kv~~L~~lL~~~~~~~~~~~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~l~~~~q~~vl~~Fr~g~~ni 477 (1590)
.+..|++.+.+.. ..+.++||||.++..++.|+..|.. .++++.++||. |++.+|.+++++|++|++++
T Consensus 16 qv~dll~~i~~~~-~~g~r~lvfc~t~~~~~~l~~~L~~----~Gi~a~~~Hg~------~~~~eR~~~l~~F~~G~~~v 84 (174)
T d1c4oa2 16 QILDLMEGIRERA-ARGERTLVTVLTVRMAEELTSFLVE----HGIRARYLHHE------LDAFKRQALIRDLRLGHYDC 84 (174)
T ss_dssp HHHHHHHHHHHHH-HTTCEEEEECSSHHHHHHHHHHHHH----TTCCEEEECTT------CCHHHHHHHHHHHHTTSCSE
T ss_pred CHHHHHHHHHHHH-HCCCCEEEEECCHHHHHHHHHHHHH----CCCCEEEEECC------CCHHHHHHHHHHHHCCCEEE
T ss_conf 8999999999998-6598389998230379999999986----59725898615------54188999999997798699
Q ss_pred EEECCCCCCCCCCCCCCEEEECCCCC-----CHHHHHHHHCCCCCCCCEEEEEE-CCCHHHHHH
Q ss_conf 99724322354578863899806999-----97799997211233486299973-122377663
Q 000384 478 LFATDVIEEGMHVPNCSYVIRFDLPK-----TVSSYIQSRGRARQHNSQFILML-ERSERSVTD 535 (1590)
Q Consensus 478 LVaTsvleeGIDIp~~~~VI~fD~p~-----s~~syiQr~GRArR~gs~~i~lv-~~~E~~~~~ 535 (1590)
||||+++++|||+|++++||+||.|. +..+|+|+.|||+|.+.+.+++. ...+..|.+
T Consensus 85 LVaT~v~~~GiDip~V~~Vi~~~~~~~~~~~~~~~~iq~~GR~gR~~~g~~~~~~~~~~~~~~~ 148 (174)
T d1c4oa2 85 LVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNARGEVWLYADRVSEAMQR 148 (174)
T ss_dssp EEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTTCEEEEECSSCCHHHHH
T ss_pred EEEEEEEEEECCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHH
T ss_conf 9963564211367777389980365445530167799886144304787068962677789999
|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.73 E-value=2.8e-16 Score=135.46 Aligned_cols=162 Identities=19% Similarity=0.180 Sum_probs=133.5
Q ss_pred CCCCCCHHHHHHHHHHH-CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHH---C
Q ss_conf 79999488999999972-4898999089983999999999999999770799729999935755599999999861---6
Q 000384 42 INFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVH---T 117 (1590)
Q Consensus 42 ~~~~pR~yQ~e~le~~l-~~n~Ii~~~TGsGKTliaillI~~~l~~~~~~~~~~~vlvLvPtv~Lv~Qq~~~i~~~---~ 117 (1590)
..-.|++.|.++++.++ ++|+|+.++||+|||+++++++.+... ....+..+++++|+..++.|........ .
T Consensus 20 g~~~pt~iQ~~aip~il~g~dvi~~a~tGsGKTlay~lp~i~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (206)
T d1s2ma1 20 GFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVK---PKLNKIQALIMVPTRELALQTSQVVRTLGKHC 96 (206)
T ss_dssp TCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCC---TTSCSCCEEEECSSHHHHHHHHHHHHHHTTTT
T ss_pred CCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCC---CCCCCCCCEEECCCHHHHHHHHHHHHHCCCCC
T ss_conf 999999999999999986998898658762144443033110023---22234432032351121133544333204446
Q ss_pred CCCEEEEECCCCCCCCCHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 98358986688877302278898307896999859999999972176765421899846410038990899999997308
Q 000384 118 DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS 197 (1590)
Q Consensus 118 ~~~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~Ll~~L~~~~~~l~~i~LIIiDEaH~~~~~~~~~~imk~~~~~~ 197 (1590)
++++...+|+..... .-......++|+|+||+.|.+++..+.+.+.++.++|+||||++... .|...+...+...
T Consensus 97 ~~~~~~~~g~~~~~~----~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~lV~DEaD~l~~~-~f~~~v~~I~~~l 171 (206)
T d1s2ma1 97 GISCMVTTGGTNLRD----DILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSR-DFKTIIEQILSFL 171 (206)
T ss_dssp TCCEEEECSSSCHHH----HHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSSH-HHHHHHHHHHTTS
T ss_pred CEEEEEECCCCCHHH----HHHHHCCCCEEEEECCCCCCCCCCCCEEECCCCEEEEEECHHHHHHH-HHHHHHHHHHHHC
T ss_conf 706885237630146----77775256549998975333334321010122207776221344300-2477999999868
Q ss_pred CCCCCEEEEECCCC
Q ss_conf 99980999805577
Q 000384 198 DNKPKVFGMTASPV 211 (1590)
Q Consensus 198 ~~~priLgLTATP~ 211 (1590)
+...+++.+|||.-
T Consensus 172 ~~~~Q~il~SATl~ 185 (206)
T d1s2ma1 172 PPTHQSLLFSATFP 185 (206)
T ss_dssp CSSCEEEEEESCCC
T ss_pred CCCCEEEEEEEECC
T ss_conf 98888999987388
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.72 E-value=3.9e-17 Score=142.03 Aligned_cols=159 Identities=21% Similarity=0.217 Sum_probs=125.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHC-------CCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHH
Q ss_conf 9988799994889999999724-------898999089983999999999999999770799729999935755599999
Q 000384 38 STNSINFIPRIYQLKVFEVAKR-------RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQY 110 (1590)
Q Consensus 38 ~~~~~~~~pR~yQ~e~le~~l~-------~n~Ii~~~TGsGKTliaillI~~~l~~~~~~~~~~~vlvLvPtv~Lv~Qq~ 110 (1590)
......|++++-|.++++.+.+ .+.++.++||||||.+|+..+...+. .+..++|++||..|+.|++
T Consensus 76 f~~~LPFeLT~~Q~~ai~ei~~d~~~~~~m~rLL~GdvGSGKT~Va~~a~~~~~~------~g~q~~~m~Pt~~La~Qh~ 149 (264)
T d1gm5a3 76 FIKSLPFKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYE------AGFQTAFMVPTSILAIQHY 149 (264)
T ss_dssp HHHHSSSCCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHH------HTSCEEEECSCHHHHHHHH
T ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHH------CCCCEEEEEEHHHHHHHHH
T ss_conf 8840046678037888999998762367531566635355665999999999885------1355058740476657899
Q ss_pred HHHHHHC---CCCEEEEECCCCCCCCCHHHHHHHC-CCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCH
Q ss_conf 9998616---9835898668887730227889830-78969998599999999721767654218998464100389908
Q 000384 111 DVIRVHT---DFEVEEYYGAKGVDEWDSQCWQKEI-NKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPY 186 (1590)
Q Consensus 111 ~~i~~~~---~~~v~~~~G~~~~d~~~~~~w~~~~-~~~~VlV~T~q~Ll~~L~~~~~~l~~i~LIIiDEaH~~~~~~~~ 186 (1590)
+.+++++ ++.+..++|...... ....|.... ++.+|+|+|...+. ..+.+.+++|||+||-|+.+-...
T Consensus 150 ~~~~~~f~~~~~~v~~l~~~~~~~~-r~~~~~~~~~g~~~iiIGThsl~~-----~~~~f~~LglviiDEqH~fgv~Qr- 222 (264)
T d1gm5a3 150 RRTVESFSKFNIHVALLIGATTPSE-KEKIKSGLRNGQIDVVIGTHALIQ-----EDVHFKNLGLVIIDEQHRFGVKQR- 222 (264)
T ss_dssp HHHHHHHTCSSCCEEECCSSSCHHH-HHHHHHHHHSSCCCEEEECTTHHH-----HCCCCSCCCEEEEESCCCC------
T ss_pred HHHHHHHHHCCCCCEEECCCCCHHH-HHHHHHHHHCCCCCEEEEEHHHHC-----CCCCCCCCCEEEECCCCCCCHHHH-
T ss_conf 9998862012312111011013699-999999997799799996538854-----898745562256324210024347-
Q ss_pred HHHHHHHHHCCCCCCCEEEEECCCCCCC
Q ss_conf 9999999730899980999805577567
Q 000384 187 TKIMKEFYHKSDNKPKVFGMTASPVVRK 214 (1590)
Q Consensus 187 ~~imk~~~~~~~~~priLgLTATP~~~~ 214 (1590)
+........+++|.|||||+.+.
T Consensus 223 -----~~l~~~~~~~~~l~~SATPiprt 245 (264)
T d1gm5a3 223 -----EALMNKGKMVDTLVMSATPIPRS 245 (264)
T ss_dssp -----CCCCSSSSCCCEEEEESSCCCHH
T ss_pred -----HHHHHHCCCCCEEEEECCCCHHH
T ss_conf -----99997186999899979889999
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=99.71 E-value=3.7e-16 Score=134.61 Aligned_cols=159 Identities=20% Similarity=0.240 Sum_probs=125.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHC-------CCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHH
Q ss_conf 99988799994889999999724-------89899908998399999999999999977079972999993575559999
Q 000384 37 SSTNSINFIPRIYQLKVFEVAKR-------RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQ 109 (1590)
Q Consensus 37 ~~~~~~~~~pR~yQ~e~le~~l~-------~n~Ii~~~TGsGKTliaillI~~~l~~~~~~~~~~~vlvLvPtv~Lv~Qq 109 (1590)
.......|.+++-|..+++.+.. .+.+++++||||||.+|+..+...+. .++.+++++|+..|+.|.
T Consensus 47 ~~~~~lP~~lt~~Q~~~~~~i~~~~~~~~~~~~LL~GdvGsGKT~V~~~a~~~~~~------~g~qv~~l~Pt~~La~Q~ 120 (233)
T d2eyqa3 47 LFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD------NHKQVAVLVPTTLLAQQH 120 (233)
T ss_dssp HHHHTCCSCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT------TTCEEEEECSSHHHHHHH
T ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHH------CCCCEEEECCHHHHHHHH
T ss_conf 66640011346048889999999985457667089838887728999999999997------689569974688767999
Q ss_pred HHHHHHH---CCCCEEEEECCCCCCCCCHHHHHHHC-CCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCC
Q ss_conf 9999861---69835898668887730227889830-7896999859999999972176765421899846410038990
Q 000384 110 YDVIRVH---TDFEVEEYYGAKGVDEWDSQCWQKEI-NKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHP 185 (1590)
Q Consensus 110 ~~~i~~~---~~~~v~~~~G~~~~d~~~~~~w~~~~-~~~~VlV~T~q~Ll~~L~~~~~~l~~i~LIIiDEaH~~~~~~~ 185 (1590)
++.|+.. ++.++..++|...... ....|.... ...+|+|+|...+ ..++.+.+++|||+||-|+..
T Consensus 121 ~~~~~~~~~~~~~~v~~l~~~~~~~~-~~~~~~~~~~g~~~iviGths~l-----~~~~~f~~LgLiIiDEeH~fg---- 190 (233)
T d2eyqa3 121 YDNFRDRFANWPVRIEMISRFRSAKE-QTQILAEVAEGKIDILIGTHKLL-----QSDVKFKDLGLLIVDEEHRFG---- 190 (233)
T ss_dssp HHHHHHHSTTTTCCEEEESTTSCHHH-HHHHHHHHHTTCCSEEEECTHHH-----HSCCCCSSEEEEEEESGGGSC----
T ss_pred HHHHHHHHHHCCCEEEECCCCCCCHH-HHHHHHHHHCCCCCEEEEEHHHH-----CCCCCCCCCCCEEEECHHHHH----
T ss_conf 99999987247977976357653126-99999999679978897420233-----067765554630222312332----
Q ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCCC
Q ss_conf 8999999973089998099980557756
Q 000384 186 YTKIMKEFYHKSDNKPKVFGMTASPVVR 213 (1590)
Q Consensus 186 ~~~imk~~~~~~~~~priLgLTATP~~~ 213 (1590)
+.+...- ......++++.|||||+.+
T Consensus 191 ~kQ~~~l--~~~~~~~~~l~~SATPipr 216 (233)
T d2eyqa3 191 VRHKERI--KAMRANVDILTLTATPIPR 216 (233)
T ss_dssp HHHHHHH--HHHHTTSEEEEEESSCCCH
T ss_pred HHHHHHH--HHHCCCCCEEEEECCHHHH
T ss_conf 5789999--9618899889996551099
|
| >d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable DEAD box RNA helicase YqfR species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.67 E-value=8.8e-16 Score=131.73 Aligned_cols=160 Identities=17% Similarity=0.190 Sum_probs=123.3
Q ss_pred CCCCCHHHHHHHHHHH-CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHC----
Q ss_conf 9999488999999972-48989990899839999999999999997707997299999357555999999998616----
Q 000384 43 NFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT---- 117 (1590)
Q Consensus 43 ~~~pR~yQ~e~le~~l-~~n~Ii~~~TGsGKTliaillI~~~l~~~~~~~~~~~vlvLvPtv~Lv~Qq~~~i~~~~---- 117 (1590)
...|++.|.++++.++ ++|+++.+|||||||+++++++.+... ........++++|+..++.|.+..+....
T Consensus 21 ~~~pt~iQ~~aip~~l~G~dvii~a~TGSGKTlayllp~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (209)
T d1q0ua_ 21 FYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIK---PERAEVQAVITAPTRELATQIYHETLKITKFCP 97 (209)
T ss_dssp CCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCC---TTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEEECCCCC---CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 99999999999999987997686624442133144431001245---444444422223333214778888876412233
Q ss_pred ---CCCEEEEECCCCCCCCCHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHH
Q ss_conf ---98358986688877302278898307896999859999999972176765421899846410038990899999997
Q 000384 118 ---DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFY 194 (1590)
Q Consensus 118 ---~~~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~Ll~~L~~~~~~l~~i~LIIiDEaH~~~~~~~~~~imk~~~ 194 (1590)
...+....|...... . -.....+++|+|+||+.+.+++.+....+.++.++|+||||++.+. .+...+....
T Consensus 98 ~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~Ilv~TP~~l~~~~~~~~~~~~~l~~lViDEad~ll~~-~f~~~v~~I~ 172 (209)
T d1q0ua_ 98 KDRMIVARCLIGGTDKQK-A---LEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDM-GFITDVDQIA 172 (209)
T ss_dssp GGGCCCEEEECCCSHHHH-T---TCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHHHHT-TCHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHH-H---HHHHCCCCEEEEECCCHHHHHHHHHCCCCCCCEEEEEEECCCCCCC-CCHHHHHHHH
T ss_conf 343211000256203677-8---8874667549983471012233210134455338999602301131-4099999999
Q ss_pred HCCCCCCCEEEEECCC
Q ss_conf 3089998099980557
Q 000384 195 HKSDNKPKVFGMTASP 210 (1590)
Q Consensus 195 ~~~~~~priLgLTATP 210 (1590)
...++..+++++|||.
T Consensus 173 ~~~~~~~Q~il~SATl 188 (209)
T d1q0ua_ 173 ARMPKDLQMLVFSATI 188 (209)
T ss_dssp HTSCTTCEEEEEESCC
T ss_pred HHCCCCCEEEEEECCC
T ss_conf 9789988799997219
|
| >d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=99.66 E-value=2.7e-15 Score=128.08 Aligned_cols=163 Identities=17% Similarity=0.183 Sum_probs=110.7
Q ss_pred CCCCCHHHHHHHHHHH----------CCCEEEEECCCCHHHHHHHHHHHHHHHHHHH-CCCCEEEEEEECCHHHHHHHHH
Q ss_conf 9999488999999972----------4898999089983999999999999999770-7997299999357555999999
Q 000384 43 NFIPRIYQLKVFEVAK----------RRNTIAVLETGAGKTMIAVMLIKDIAQAIKS-NGFKKLIIFLAPTVHLVHQQYD 111 (1590)
Q Consensus 43 ~~~pR~yQ~e~le~~l----------~~n~Ii~~~TGsGKTliaillI~~~l~~~~~-~~~~~~vlvLvPtv~Lv~Qq~~ 111 (1590)
.-.+|+||.+++.++. ..++|+++++|+|||++++.++..+...... ......++|+||. .|+.||.+
T Consensus 53 ~~~Lr~hQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~qaia~l~~l~~~~~~~~~~~~~~LIV~P~-sl~~qW~~ 131 (298)
T d1z3ix2 53 SKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYN 131 (298)
T ss_dssp HTTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCC-HHHHHHHH
T ss_conf 01020999999999999877354126874698747878899999999999998460116887737998050-45578999
Q ss_pred HHHHHCC--CCEEEEECCCCCCCCCHHH--HHH---HCCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCC
Q ss_conf 9986169--8358986688877302278--898---30789699985999999997217676542189984641003899
Q 000384 112 VIRVHTD--FEVEEYYGAKGVDEWDSQC--WQK---EINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNH 184 (1590)
Q Consensus 112 ~i~~~~~--~~v~~~~G~~~~d~~~~~~--w~~---~~~~~~VlV~T~q~Ll~~L~~~~~~l~~i~LIIiDEaH~~~~~~ 184 (1590)
+|.++++ ..+..++|+..... .... |.. ......|+++|++.+..... .+.-.++++||+||||++....
T Consensus 132 Ei~k~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~i~sy~~~~~~~~--~l~~~~~~~vI~DEaH~ikn~~ 208 (298)
T d1z3ix2 132 EVGKWLGGRVQPVAIDGGSKDEI-DSKLVNFISQQGMRIPTPILIISYETFRLHAE--VLHKGKVGLVICDEGHRLKNSD 208 (298)
T ss_dssp HHHHHHGGGCCEEEECSSCHHHH-HHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT--TTTTSCCCEEEETTGGGCCTTC
T ss_pred HHHHHCCCCEEEEEEECCHHHHH-HHHHHHHHHCCCCCCCCEEEEEEECCCCCCHH--CCCCCCEEEEECCCCCCCCCCC
T ss_conf 88763577525999968627778-88998765303766661399986123222200--0334211454114232201322
Q ss_pred CHH-HHHHHHHHCCCCCCCEEEEECCCCCCC
Q ss_conf 089-999999730899980999805577567
Q 000384 185 PYT-KIMKEFYHKSDNKPKVFGMTASPVVRK 214 (1590)
Q Consensus 185 ~~~-~imk~~~~~~~~~priLgLTATP~~~~ 214 (1590)
.-. ..+..+ ...++++|||||+.++
T Consensus 209 s~~~~a~~~l-----~~~~rllLTGTPi~N~ 234 (298)
T d1z3ix2 209 NQTYLALNSM-----NAQRRVLISGTPIQND 234 (298)
T ss_dssp HHHHHHHHHH-----CCSEEEEECSSCSGGG
T ss_pred CHHHHHHHCC-----CCCEEEEECCHHHHHH
T ss_conf 0345644213-----4112565226077666
|
| >d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.66 E-value=6.6e-15 Score=125.09 Aligned_cols=155 Identities=17% Similarity=0.192 Sum_probs=109.1
Q ss_pred CCCCCCCCHHHHHHHHHHH-----CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHH
Q ss_conf 8879999488999999972-----48989990899839999999999999997707997299999357555999999998
Q 000384 40 NSINFIPRIYQLKVFEVAK-----RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIR 114 (1590)
Q Consensus 40 ~~~~~~pR~yQ~e~le~~l-----~~n~Ii~~~TGsGKTliaillI~~~l~~~~~~~~~~~vlvLvPtv~Lv~Qq~~~i~ 114 (1590)
.....++|+||.+++..+. ..++|+++++|+|||++++.++.++.. .+....++++||. .++.||.+++.
T Consensus 7 ~~~~~~L~~yQ~~~v~~~~~~~~~~~g~iLaDe~GlGKT~~~i~~~~~~~~----~~~~~~~LIv~p~-~l~~~W~~e~~ 81 (230)
T d1z63a1 7 YNIKANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKK----ENELTPSLVICPL-SVLKNWEEELS 81 (230)
T ss_dssp CSCSSCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHH----TTCCSSEEEEECS-TTHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHH----CCCCCCCCEECCH-HHHHHHHHHHH
T ss_conf 465045069999999999986216998799858998869999873554421----2355644110535-54267777777
Q ss_pred HHCCCCEEEEECCCCCCCCCHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHH
Q ss_conf 61698358986688877302278898307896999859999999972176765421899846410038990899999997
Q 000384 115 VHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFY 194 (1590)
Q Consensus 115 ~~~~~~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~Ll~~L~~~~~~l~~i~LIIiDEaH~~~~~~~~~~imk~~~ 194 (1590)
.+........++...... ...+.+|+++|++.+.+.-. +.-..+.+||+||+|++.........+ .
T Consensus 82 ~~~~~~~~~~~~~~~~~~--------~~~~~~vvi~~~~~~~~~~~---l~~~~~~~vI~DEah~~k~~~s~~~~~---~ 147 (230)
T d1z63a1 82 KFAPHLRFAVFHEDRSKI--------KLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQTKIFKA---V 147 (230)
T ss_dssp HHCTTSCEEECSSSTTSC--------CGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTTSHHHHH---H
T ss_pred HHCCCCCCEEECCCCCHH--------HCCCCCEEEEEHHHHHHHHH---HHCCCCEEEEEEHHHCCCCCCHHHHHH---H
T ss_conf 640254410101421000--------02576889854999986888---741651399997100344322055666---5
Q ss_pred HCCCCCCCEEEEECCCCCCC
Q ss_conf 30899980999805577567
Q 000384 195 HKSDNKPKVFGMTASPVVRK 214 (1590)
Q Consensus 195 ~~~~~~priLgLTATP~~~~ 214 (1590)
... ...++++|||||+.++
T Consensus 148 ~~l-~a~~r~~LTgTPi~n~ 166 (230)
T d1z63a1 148 KEL-KSKYRIALTGTPIENK 166 (230)
T ss_dssp HTS-CEEEEEEECSSCSTTC
T ss_pred HHH-CCCEEEEEECCHHHHH
T ss_conf 440-4655799725267767
|
| >d2nuga1 a.149.1.1 (A:3-150) RNase III endonuclease catalytic domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: RNase III domain-like superfamily: RNase III domain-like family: RNase III catalytic domain-like domain: RNase III endonuclease catalytic domain species: Aquifex aeolicus [TaxId: 63363]
Probab=99.62 E-value=6.5e-16 Score=132.74 Aligned_cols=111 Identities=23% Similarity=0.316 Sum_probs=90.0
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCHH----------------HHHHHHCCCCHHHHHHHHHHHHCCC-----
Q ss_conf 9999998198438888999988168988986617----------------8877711369477998999998099-----
Q 000384 1240 IKDIESKIGYEFTVKFLLQEAITHASVQEFYCYQ----------------NLYKHLQHCSTLLLSQITEYVKSFP----- 1298 (1590)
Q Consensus 1240 ~~~le~~lgy~F~~~~LL~eAlTH~S~~~~~~ye----------------~L~~~~~~~~~~~~~~i~~~~~~~~----- 1298 (1590)
++.+|++|||+|+|+.||.+||||+||....+|| +|+..+|..+++.++.++..+..-.
T Consensus 2 l~~le~~igy~F~n~~LL~~Alth~S~~~~~~~erLeflGDavl~~~v~~~l~~~~p~~~~g~lt~~r~~lvsn~~La~~ 81 (148)
T d2nuga1 2 LEQLEKKLGYTFKDKSLLEKALTHVSYSKKEHYETLEFLGDALVNFFIVDLLVQYSPNKREGFLSPLKAYLISEEFFNLL 81 (148)
T ss_dssp HHHHHHHHTCCCSSHHHHHHHHBCTTTCSSSCSHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHTSHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 88999998986288899999866857688755099999998887545578998508775167887777776413676657
Q ss_pred ----CCCCCCCCCCCCCCCCHHHHHHHHHHHCEEECCCCCHHHHHHHHHHHHCCCC
Q ss_conf ----9999789999999872245689998760263279885889999886214646
Q 000384 1299 ----KPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIV 1350 (1590)
Q Consensus 1299 ----~~~~~~~~~~~~~~pk~l~D~~Ea~iGAi~lDsg~~~~~~~~~~~~~l~~~i 1350 (1590)
+..+--........+|+++|+|||++||||+|+|+++..+++++.+++.+.|
T Consensus 82 a~~lgl~~~i~~~~~~~~~kilad~~EAiiGAiylD~g~~~~~~~~~i~~l~~~~i 137 (148)
T d2nuga1 82 AQKLELHKFIRIKRGKINETIIGDVFEALWAAVYIDSGRDANFTRELFYKLFKEDI 137 (148)
T ss_dssp HHTTTGGGTCBSCTTCCCHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 88850889987526420103657899998877642268779999999999999999
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.61 E-value=1.8e-15 Score=129.40 Aligned_cols=127 Identities=16% Similarity=0.125 Sum_probs=92.0
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHH
Q ss_conf 48989990899839999999999999997707997299999357555999999998616983589866888773022788
Q 000384 59 RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCW 138 (1590)
Q Consensus 59 ~~n~Ii~~~TGsGKTliaillI~~~l~~~~~~~~~~~vlvLvPtv~Lv~Qq~~~i~~~~~~~v~~~~G~~~~d~~~~~~w 138 (1590)
.+..|+.+|||+|||+++..++.+ .+.+++|++|++.|++||++.+.+.++...+...++.....
T Consensus 8 ~~~~ll~apTGsGKT~~~~~~~~~---------~~~~vli~~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~------ 72 (136)
T d1a1va1 8 FQVAHLHAPTGSGKSTKVPAAYAA---------QGYKVLVLNPSVAATLGFGAYMSKAHGVDPNIRTGVRTITT------ 72 (136)
T ss_dssp CEEEEEECCTTSCTTTHHHHHHHT---------TTCCEEEEESCHHHHHHHHHHHHHHHSCCCEEECSSCEECC------
T ss_pred CCEEEEEECCCCCHHHHHHHHHHH---------CCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC------
T ss_conf 888999968877999999999998---------69939997676999999999999985202464300122113------
Q ss_pred HHHCCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCC--CHHHHHHHHHHCCCCCCCEEEEECCC
Q ss_conf 9830789699985999999997217676542189984641003899--08999999973089998099980557
Q 000384 139 QKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNH--PYTKIMKEFYHKSDNKPKVFGMTASP 210 (1590)
Q Consensus 139 ~~~~~~~~VlV~T~q~Ll~~L~~~~~~l~~i~LIIiDEaH~~~~~~--~~~~imk~~~~~~~~~priLgLTATP 210 (1590)
...+.++|.+.+..... ..+.++++||+||||++.... .+..+++. ......++++||||||
T Consensus 73 -----~~~~~~~~~~~~~~~~~---~~~~~~~~vIiDE~H~~~~~~~~~~~~~l~~--~~~~~~~~~l~~TATP 136 (136)
T d1a1va1 73 -----GSPITYSTYGKFLADGG---CSGGAYDIIICDECHSTDATSILGIGTVLDQ--AETAGARLVVLATATP 136 (136)
T ss_dssp -----CCSEEEEEHHHHHHTTG---GGGCCCSEEEEETTTCCSHHHHHHHHHHHHH--TTTTTCSEEEEEESSC
T ss_pred -----CCCEEEEEEEEECCCCC---HHHHCCCEEEEECCCCCCHHHHHHHHHHHHH--HHHCCCCCEEEEECCC
T ss_conf -----44227886410002353---0241599999825553588789999999999--9877997299992799
|
| >d1u61a_ a.149.1.1 (A:) Hypothetical protein BC0111 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: RNase III domain-like superfamily: RNase III domain-like family: RNase III catalytic domain-like domain: Hypothetical protein BC0111 species: Bacillus cereus [TaxId: 1396]
Probab=99.58 E-value=1.1e-15 Score=130.93 Aligned_cols=118 Identities=14% Similarity=0.014 Sum_probs=90.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99995034424236676899999983099999425689887746009999997827974321235577786447986677
Q 000384 1059 ESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSL 1138 (1590)
Q Consensus 1059 ~~~n~ErLE~LGDs~Lk~~~s~~l~~~~p~~~eg~Ls~~r~~~vsN~~L~~~a~~~gL~~~i~~~~f~~~~W~pp~~~~~ 1138 (1590)
...|...|||||||+|+++++.|+|..+| .+||.||.+|+.+|||.+|++++.+++++.||........+|--..-
T Consensus 4 ~~~~~~~LefLGDAVl~l~v~~~L~~~~p-~~eg~Lt~~r~~lV~~~~la~~a~~l~l~~~l~~~e~~~~~~Grn~~--- 79 (127)
T d1u61a_ 4 KQLNSLALAYMGDAVYEQYIRYHLLQKGK-VRPNQLHRLGTSFVSAKAQAKVVYHLLETAFLTEEEEAVLRRGRNAN--- 79 (127)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHHCC-SCGGGHHHHHHHHHSHHHHHHHHHHHHHTTCSCHHHHHHHHHHTCCC---
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCC---
T ss_conf 54484778987899999999999997189-99017999999992499999999990767776403343101677554---
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 887887898766546899643455420117767898522354214569999887864446756799999992
Q 000384 1139 RPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWL 1210 (1590)
Q Consensus 1139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~iAD~vEAliGA~~~~~G~~~a~~~~~~l 1210 (1590)
. .....+.....+.+||++||||||+|+++|++.+..++.+.
T Consensus 80 ---------------------~---------~~~~k~~~~~~y~lad~fEAliGalYLd~~~e~~~~~i~~~ 121 (127)
T d1u61a_ 80 ---------------------S---------GTVPKNTDVQTYRHSTAFEALIGYHHLLNNRERLDEIVYKA 121 (127)
T ss_dssp ---------------------S---------SCCCTTCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ---------------------C---------CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf ---------------------7---------77776665147776059999999999918889999999999
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=99.57 E-value=3.7e-15 Score=126.97 Aligned_cols=132 Identities=18% Similarity=0.096 Sum_probs=89.7
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHH
Q ss_conf 48989990899839999999999999997707997299999357555999999998616983589866888773022788
Q 000384 59 RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCW 138 (1590)
Q Consensus 59 ~~n~Ii~~~TGsGKTliaillI~~~l~~~~~~~~~~~vlvLvPtv~Lv~Qq~~~i~~~~~~~v~~~~G~~~~d~~~~~~w 138 (1590)
++++++++|||+|||.+++..+..... ..+.++++++|++.++.|+++.+... .+.........
T Consensus 7 ~~~~il~~~tGsGKT~~~~~~~~~~~~-----~~~~~vli~~p~~~l~~q~~~~~~~~---~~~~~~~~~~~-------- 70 (140)
T d1yksa1 7 GMTTVLDFHPGAGKTRRFLPQILAECA-----RRRLRTLVLAPTRVVLSEMKEAFHGL---DVKFHTQAFSA-------- 70 (140)
T ss_dssp TCEEEECCCTTSSTTTTHHHHHHHHHH-----HTTCCEEEEESSHHHHHHHHHHTTTS---CEEEESSCCCC--------
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHH-----HCCCEEEEEECCHHHHHHHHHHHHHH---HHHHCCCCCCC--------
T ss_conf 996799817998855999999999753-----13851565312106889999875324---32201120001--------
Q ss_pred HHHCCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCHH-HHHHHHHHCCCCCCCEEEEECCC
Q ss_conf 9830789699985999999997217676542189984641003899089-99999973089998099980557
Q 000384 139 QKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYT-KIMKEFYHKSDNKPKVFGMTASP 210 (1590)
Q Consensus 139 ~~~~~~~~VlV~T~q~Ll~~L~~~~~~l~~i~LIIiDEaH~~~~~~~~~-~imk~~~~~~~~~priLgLTATP 210 (1590)
.......+.+.|.+.+.+... ....+.++++|||||||++..+.... ..+..+. . ....++++|||||
T Consensus 71 -~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~lvIiDEaH~~~~~~~~~~~~~~~~~-~-~~~~~~l~lTATP 139 (140)
T d1yksa1 71 -HGSGREVIDAMCHATLTYRML-EPTRVVNWEVIIMDEAHFLDPASIAARGWAAHRA-R-ANESATILMTATP 139 (140)
T ss_dssp -CCCSSCCEEEEEHHHHHHHHT-SSSCCCCCSEEEETTTTCCSHHHHHHHHHHHHHH-H-TTSCEEEEECSSC
T ss_pred -CCCCCCCHHHHHHHHHHHHHH-CCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHH-H-CCCCCEEEEECCC
T ss_conf -223333002426999999984-1665464208997543346754399999999982-5-7999989998299
|
| >d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=99.54 E-value=5.7e-14 Score=117.95 Aligned_cols=118 Identities=13% Similarity=0.187 Sum_probs=105.0
Q ss_pred CCCHHHHHHHHHHHHCCCCCCCEEEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 99999999999998409999818999980098999999998629999870699997578887988999999999983089
Q 000384 394 YISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGG 473 (1590)
Q Consensus 394 ~~s~Kv~~L~~lL~~~~~~~~~~~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~l~~~~q~~vl~~Fr~g 473 (1590)
..|.|+..|.+++.......+.++|||++.+.+.+.|.++|.. .++.+..++|. ++..+|..+++.|+++
T Consensus 98 ~~S~Kl~~L~~ll~~~~~~~g~KvlIFs~~~~~ld~l~~~l~~----~g~~~~~l~G~------~~~~~R~~~i~~F~~~ 167 (346)
T d1z3ix1 98 QLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRN----RRYLYVRLDGT------MSIKKRAKIVERFNNP 167 (346)
T ss_dssp GGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHH----HTCCEEEECSS------CCHHHHHHHHHHHHST
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHH----HHCCCCCCCCC------HHHHHHHHHHHHHHCC
T ss_conf 0178999999999998875189516886301456799999763----00241101110------0278899999865102
Q ss_pred CC---EEEEECCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHCCCCCCCCE
Q ss_conf 82---1999724322354578863899806999977999972112334862
Q 000384 474 KV---NLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQ 521 (1590)
Q Consensus 474 ~~---niLVaTsvleeGIDIp~~~~VI~fD~p~s~~syiQr~GRArR~gs~ 521 (1590)
.. -+|++|.++++|||++.++.||.||++||+..+.|++||+.|.|++
T Consensus 168 ~~~~~vlLls~~agg~GlnL~~a~~vi~~d~~wnp~~~~Qa~~R~~R~GQ~ 218 (346)
T d1z3ix1 168 SSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQK 218 (346)
T ss_dssp TCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCC
T ss_pred CCCCEEEEECCHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHCCCCCCCC
T ss_conf 343302540331444335656430799945788615586763334034899
|
| >d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.51 E-value=5e-15 Score=125.97 Aligned_cols=107 Identities=21% Similarity=0.350 Sum_probs=95.5
Q ss_pred CHHHHHHHHHHHHCCCCCCCEEEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 99999999999840999981899998009899999999862999987069999757888798899999999998308982
Q 000384 396 STKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKV 475 (1590)
Q Consensus 396 s~Kv~~L~~lL~~~~~~~~~~~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~l~~~~q~~vl~~Fr~g~~ 475 (1590)
+.|+..|.+++.... +.++|||++.+..+..|.+.+.. ..++|. ++..+|.++++.|++|++
T Consensus 78 ~~K~~~l~~ll~~~~---~~k~lvf~~~~~~~~~l~~~l~~---------~~i~g~------~~~~~R~~~l~~F~~~~~ 139 (200)
T d2fwra1 78 KNKIRKLREILERHR---KDKIIIFTRHNELVYRISKVFLI---------PAITHR------TSREEREEILEGFRTGRF 139 (200)
T ss_dssp SHHHHHHHHHHHHTS---SSCBCCBCSCHHHHHHHHHHTTC---------CBCCSS------SCSHHHHTHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHCC---CCCEEEEECCHHHHHHHHHHCCC---------CEEECC------CCHHHHHHHHHHHHCCCE
T ss_conf 889999999999677---98079994759999998763385---------525579------999999999988634870
Q ss_pred EEEEECCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHCCCCCCCC
Q ss_conf 199972432235457886389980699997799997211233486
Q 000384 476 NLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNS 520 (1590)
Q Consensus 476 niLVaTsvleeGIDIp~~~~VI~fD~p~s~~syiQr~GRArR~gs 520 (1590)
++||+|+++++|+|+|.|++||.||.|+|+..|+|++||++|.|+
T Consensus 140 ~vLv~~~~~~~Gidl~~~~~vi~~~~~~s~~~~~Q~iGR~~R~~~ 184 (200)
T d2fwra1 140 RAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSK 184 (200)
T ss_dssp SBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCT
T ss_pred EEEEECCHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCC
T ss_conf 354302102102579988889996799799999999874487999
|
| >d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=99.47 E-value=1.7e-13 Score=114.40 Aligned_cols=110 Identities=15% Similarity=0.270 Sum_probs=97.4
Q ss_pred CCCCEEEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCC
Q ss_conf 99818999980098999999998629999870699997578887988999999999983089821999724322354578
Q 000384 412 STQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVP 491 (1590)
Q Consensus 412 ~~~~~~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~l~~~~q~~vl~~Fr~g~~niLVaTsvleeGIDIp 491 (1590)
..+.++.+.|+.......+...+.+. ++..++..+||. |+.+++++++++|++|++++||||.|.|.|||||
T Consensus 29 ~rGgQvy~V~p~I~~~e~~~~~l~~~--~p~~~i~~lHGk------m~~~eke~im~~F~~g~~~ILv~TtvIEvGiDvp 100 (211)
T d2eyqa5 29 LRGGQVYYLYNDVENIQKAAERLAEL--VPEARIAIGHGQ------MRERELERVMNDFHHQRFNVLVCTTIIETGIDIP 100 (211)
T ss_dssp TTTCEEEEECCCSSCHHHHHHHHHHH--CTTSCEEECCSS------CCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCT
T ss_pred HCCCEEEEEECCCCCHHHHHHHHHHH--CCCEEEEEEEEC------CCHHHHHHHHHHHHCCCCCEEEEEHHHHHCCCCC
T ss_conf 86995999971752126688888874--773379999722------6888899999999829862688755344046899
Q ss_pred CCCEEEECCCCC-CHHHHHHHHCCCCCCCC-EEEEEECCC
Q ss_conf 863899806999-97799997211233486-299973122
Q 000384 492 NCSYVIRFDLPK-TVSSYIQSRGRARQHNS-QFILMLERS 529 (1590)
Q Consensus 492 ~~~~VI~fD~p~-s~~syiQr~GRArR~gs-~~i~lv~~~ 529 (1590)
+++++|..+... .+.++.|.+||+||.+. .|++|+.+.
T Consensus 101 nA~~iiI~~a~rfGLaQLhQLRGRVGR~~~~s~c~l~~~~ 140 (211)
T d2eyqa5 101 TANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPH 140 (211)
T ss_dssp TEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECC
T ss_pred CCCEEEEECCHHCCCCCCCCCCCEEEECCCCCEEEEEECC
T ss_conf 8769987130003311222302335536766548998568
|
| >d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.45 E-value=2.8e-13 Score=112.78 Aligned_cols=111 Identities=18% Similarity=0.275 Sum_probs=84.6
Q ss_pred CCEEEEEEEHHHHHHHHHHHHHHC----CCCCC----------------------EEEEEEECCCCCCCCCCHHHHHHHH
Q ss_conf 818999980098999999998629----99987----------------------0699997578887988999999999
Q 000384 414 QVLCIIFVERIIAAKVVERFVKKV----PFLTH----------------------LTVAYLTGSTTSVDALTPKVQKEVL 467 (1590)
Q Consensus 414 ~~~~IIFv~~r~~a~~L~~~L~~~----~~~~~----------------------~~~~~l~G~~~~~~~l~~~~q~~vl 467 (1590)
+.++||||++|..+..++..|... ..... .-+++.||+ |+..+|..+.
T Consensus 40 ~~~~LVF~~sRk~~~~~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~GIa~hh~~------l~~~~r~~ie 113 (201)
T d2p6ra4 40 NGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAG------LLNGQRRVVE 113 (201)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTT------SCHHHHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH------HHHHHHHHHH
T ss_conf 9968999689999999999999988753022578999887512355699999985117888777------6256689999
Q ss_pred HHHCCCCCEEEEECCCCCCCCCCCCCCEEEE-------CCCCCCHHHHHHHHCCCCCCC---CEEEEEE-CCCH
Q ss_conf 9830898219997243223545788638998-------069999779999721123348---6299973-1223
Q 000384 468 ESFRGGKVNLLFATDVIEEGMHVPNCSYVIR-------FDLPKTVSSYIQSRGRARQHN---SQFILML-ERSE 530 (1590)
Q Consensus 468 ~~Fr~g~~niLVaTsvleeGIDIp~~~~VI~-------fD~p~s~~syiQr~GRArR~g---s~~i~lv-~~~E 530 (1590)
+.|++|.+++||||+++++|||+|+.++||. ++.|.+..+|+|+.|||||.| .+.++++ ...+
T Consensus 114 ~~f~~g~i~vlvaT~~l~~Gin~p~~~vvi~~~~~~d~~~~~~~~~~~~q~~GRAGR~g~~~~G~~~l~~~~~~ 187 (201)
T d2p6ra4 114 DAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRD 187 (201)
T ss_dssp HHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGG
T ss_pred HHHHCCCCEEEEECHHHHHHCCCCCCEEEEECCEECCCCCCCCCHHHHHHHHCCCCCCCCCCEEEEEEEECCCC
T ss_conf 99867981499704188752379974699951420468747799999998754468999997259999968988
|
| >d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.43 E-value=1.9e-13 Score=114.03 Aligned_cols=99 Identities=16% Similarity=0.160 Sum_probs=83.0
Q ss_pred CCEEEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 81899998009899999999862999987069999757888798899999999998308982199972432235457886
Q 000384 414 QVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNC 493 (1590)
Q Consensus 414 ~~~~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~l~~~~q~~vl~~Fr~g~~niLVaTsvleeGIDIp~~ 493 (1590)
+.++||||+++..++.|++.|+. .++.+..+||. |+. +.|++|+.++||||+++++||| |++
T Consensus 35 ~~k~IVFc~t~~~ae~la~~L~~----~G~~~~~~H~~------~~~-------~~~~~~~~~vlvaTd~~~~GiD-~~v 96 (138)
T d1jr6a_ 35 GGRHLIFCHSKKKCDELAAKLVA----LGINAVAYYRG------LDV-------SVIPTNGDVVVVATDALMTGFT-GDF 96 (138)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHH----HTCEEEEECTT------CCS-------CCCTTSSCEEEEESSSSCSSSC-CCB
T ss_pred CCCEEEEECCHHHHHHHHHHHHC----CCCCHHHHHCC------CHH-------HHHHHHHCCEEEHHHHHHHCCC-CCC
T ss_conf 99899990958999999999835----26320334235------305-------4432331121410688870254-334
Q ss_pred CEEEECC----CCCCHHHHHHHHCCCCCCCCEEEEEECCCH
Q ss_conf 3899806----999977999972112334862999731223
Q 000384 494 SYVIRFD----LPKTVSSYIQSRGRARQHNSQFILMLERSE 530 (1590)
Q Consensus 494 ~~VI~fD----~p~s~~syiQr~GRArR~gs~~i~lv~~~E 530 (1590)
++||++| +|.+..+|+||.|||+|...+.+.++.+.|
T Consensus 97 ~~Vi~~~~~~~~P~~~~~y~qr~GR~gRg~~G~~~~i~~~e 137 (138)
T d1jr6a_ 97 DSVIDCNTSDGKPQDAVSRTQRRGRTGRGKPGIYRFVAPGE 137 (138)
T ss_dssp SEEEECSEETTEECCHHHHHHHHTTBCSSSCEEEEECCSSC
T ss_pred CEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCEEEEECCCC
T ss_conf 61777776477999999998686230489982899973799
|
| >d1uila_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: ATP-dependent RNA helicase A, Dhx9 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.42 E-value=2.4e-13 Score=113.16 Aligned_cols=87 Identities=22% Similarity=0.222 Sum_probs=74.0
Q ss_pred CCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEECC-CCEEEEECCCCCCCCCH
Q ss_conf 34446873135899987099999921476413444201136985544520238999999438-73389828997774402
Q 000384 1489 INMKKGGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPE-FGNVECNGDPRADKKSS 1567 (1590)
Q Consensus 1489 ~~~~~~~~k~~L~e~~~~~~~~~P~y~~~~~~~~~~~~~~~Gp~h~~~~~~F~~~v~v~~~~-~~~~~~~g~~~~sKK~A 1567 (1590)
.++...|+|+.||||||+++.+ |.|++.+ .||+|. +.|+|+|.|.+.. .+.+.+.|.| +|||+|
T Consensus 21 g~wt~~n~Ks~LqE~~Qk~k~~-p~Y~i~~----------~Gp~H~---~~F~~~v~i~~~~~~~~~~~~G~G-~sKK~A 85 (113)
T d1uila_ 21 GNWTLENAKARLNQYFQKEKIQ-GEYKYTQ----------VGPDHN---RSFIAEMTIYIKQLGRRIFAREHG-SNKKLA 85 (113)
T ss_dssp CCCCHHHHHHHHHHHHHHSCCC-CCCEEEE----------ESCSTT---CEEEEEEEEEETTTTEEEEEECCC-SSHHHH
T ss_pred CCCCCCCHHHHHHHHHHHCCCC-CCEEEEE----------ECCCCC---CEEEEEEEEEEECCCCEEEEECCC-CHHHHH
T ss_conf 8970147999999999867999-9659855----------426889---959999999421259767764062-609999
Q ss_pred HHHHHHHHHHHHHHCCEEECCCC
Q ss_conf 65599999999987491642479
Q 000384 1568 FDSAALIMLHELERQGKIIISSS 1590 (1590)
Q Consensus 1568 ~~~AA~~~l~~l~~~~~~~~~~~ 1590 (1590)
||.||+.||+.|.++|.|...+|
T Consensus 86 Eq~AA~~~l~~L~~~g~i~~~~s 108 (113)
T d1uila_ 86 AQSCALSLVRQLYHLGVIEAYSS 108 (113)
T ss_dssp HHHHHHHHHHHHHHHTSSCCCCC
T ss_pred HHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 99999999999997488676878
|
| >d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.38 E-value=3.4e-13 Score=112.04 Aligned_cols=98 Identities=13% Similarity=0.099 Sum_probs=85.1
Q ss_pred CCEEEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCHHHH----------HHHHHHHCCCCCEEEEECCC
Q ss_conf 81899998009899999999862999987069999757888798899999----------99999830898219997243
Q 000384 414 QVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQ----------KEVLESFRGGKVNLLFATDV 483 (1590)
Q Consensus 414 ~~~~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~l~~~~q----------~~vl~~Fr~g~~niLVaTsv 483 (1590)
+.++||||++|..++.|+..|+. .++++..+||. ++++.+ .++++.|+.|+.+++|+|++
T Consensus 36 ggk~LVFcnSR~~aE~La~~L~~----~Gi~a~~~Hgg------lsq~~R~~~gd~~i~~~~aLe~f~~G~~dvVVaT~~ 105 (299)
T d1a1va2 36 GGRHLIFCHSKKKCDELAAKLVA----LGINAVAYYRG------LDVSVIPTSGDVVVVATDALMTGFTGDFDSVIDCNT 105 (299)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHH----TTCCEEEECTT------SCGGGSCSSSSEEEEECTTC---CCCCBSEEEECCE
T ss_pred CCCEEEECCCHHHHHHHHHHHHH----CCCCEEEEECC------CHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEEEEE
T ss_conf 99899987968999999999977----79878997589------407778731205777899999886599838999862
Q ss_pred CCC---CCCCCCCCEEEECCCCCCHHHHHHHHCCCCCCCCE
Q ss_conf 223---54578863899806999977999972112334862
Q 000384 484 IEE---GMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQ 521 (1590)
Q Consensus 484 lee---GIDIp~~~~VI~fD~p~s~~syiQr~GRArR~gs~ 521 (1590)
+++ |+|++.+.+||+||.|.+..+|+||+||+||...+
T Consensus 106 ~a~g~~giDid~V~~VI~~d~P~SvesyIQRiGRTGRGr~G 146 (299)
T d1a1va2 106 CVTQTVDFSLDPTFTIETTTLPQDAVSRTQRRGRTGRGKPG 146 (299)
T ss_dssp EEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCSSSCE
T ss_pred HHCCCCCCCCCCCEEEEECCCCCCHHHHHHHCCCCCCCCCC
T ss_conf 01047878878516999689998989987621443799981
|
| >d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.37 E-value=2.8e-14 Score=120.33 Aligned_cols=123 Identities=17% Similarity=0.321 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHCCCCCCCEEEEEEEHHHHHH--------HHHHHHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHH
Q ss_conf 9999999998409999818999980098999--------99999862999987069999757888798899999999998
Q 000384 398 KLHELLQLFLSFGKSTQVLCIIFVERIIAAK--------VVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLES 469 (1590)
Q Consensus 398 Kv~~L~~lL~~~~~~~~~~~IIFv~~r~~a~--------~L~~~L~~~~~~~~~~~~~l~G~~~~~~~l~~~~q~~vl~~ 469 (1590)
+...+.+.+.... ..+.++.+.|+.+.... ...+.+.+. .++++++..+||. |+++++++++++
T Consensus 14 ~~~~v~~~I~~el-~~g~QvyvVcP~Ieese~~~~~~~~e~~~~l~~~-~~p~~~v~~lHG~------m~~~eke~~m~~ 85 (206)
T d1gm5a4 14 RVNEVYEFVRQEV-MRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKE-VFPEFKLGLMHGR------LSQEEKDRVMLE 85 (206)
T ss_dssp THHHHHHHHHHHT-TTSCCBCCBCCCC--------CHHHHHHHSGGGS-CC---CBCCCCSS------SCCSCSHHHHHH
T ss_pred CHHHHHHHHHHHH-HCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHH-CCCCCEEEEEEEC------CCHHHHHHHHHH
T ss_conf 2999999999999-7499889997514455321101367899999985-0899728898603------659999999999
Q ss_pred HCCCCCEEEEECCCCCCCCCCCCCCEEEECCCCC-CHHHHHHHHCCCCCCCCE-EEEEECC
Q ss_conf 3089821999724322354578863899806999-977999972112334862-9997312
Q 000384 470 FRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPK-TVSSYIQSRGRARQHNSQ-FILMLER 528 (1590)
Q Consensus 470 Fr~g~~niLVaTsvleeGIDIp~~~~VI~fD~p~-s~~syiQr~GRArR~gs~-~i~lv~~ 528 (1590)
|++|++++||||+|.|.|||+|++++||.++.+. ...++.|.+||+||.+.+ |++++..
T Consensus 86 F~~g~~~iLVaTtViE~GIDip~a~~iii~~a~~fglsqlhQlrGRvGR~~~~~~~~l~~~ 146 (206)
T d1gm5a4 86 FAEGRYDILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVG 146 (206)
T ss_dssp HTTTSSSBCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCC
T ss_pred HHCCCEEEEEEEHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHEEECCCCCEEEEEEC
T ss_conf 9779878999702431045526784899980488637788765202121212540576522
|
| >d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.36 E-value=1.5e-14 Score=122.36 Aligned_cols=102 Identities=16% Similarity=0.262 Sum_probs=88.2
Q ss_pred CHHHHHHHHHHHHCCCCCCCEEEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 99999999999840999981899998009899999999862999987069999757888798899999999998308982
Q 000384 396 STKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKV 475 (1590)
Q Consensus 396 s~Kv~~L~~lL~~~~~~~~~~~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~l~~~~q~~vl~~Fr~g~~ 475 (1590)
..|+..|.+++...+ .++||||+++.++..|+.+|... +||. +++.+|.+++++|++|++
T Consensus 11 ~~~~~~l~~~l~~~~----~~~iif~~~~~~~~~l~~~l~~~----------~hg~------~~~~~R~~~~~~f~~g~~ 70 (248)
T d1gkub2 11 DESISTLSSILEKLG----TGGIIYARTGEEAEEIYESLKNK----------FRIG------IVTATKKGDYEKFVEGEI 70 (248)
T ss_dssp CCCTTTTHHHHTTSC----SCEEEEESSHHHHHHHHHTTTTS----------SCEE------ECTTSSSHHHHHHHHTSC
T ss_pred CHHHHHHHHHHHHHC----CCEEEEECCHHHHHHHHHHHHHH----------CCCC------CCHHHHHHHHHHHHHCCC
T ss_conf 368999999999839----79899989878999999999873----------4378------999999999999982798
Q ss_pred EEEEEC----CCCCCCCCCCC-CCEEEECCCCCCHHHHHHHHCCCCCCCCE
Q ss_conf 199972----43223545788-63899806999977999972112334862
Q 000384 476 NLLFAT----DVIEEGMHVPN-CSYVIRFDLPKTVSSYIQSRGRARQHNSQ 521 (1590)
Q Consensus 476 niLVaT----svleeGIDIp~-~~~VI~fD~p~s~~syiQr~GRArR~gs~ 521 (1590)
++|||| +++++|||+|. +++||+||+|+ |.|+.||++|.|..
T Consensus 71 ~vLVaT~a~~~v~~rGlDip~~v~~VI~~d~P~----~~~r~gR~~R~g~~ 117 (248)
T d1gkub2 71 DHLIGTAHYYGTLVRGLDLPERIRFAVFVGCPS----FRVTIEDIDSLSPQ 117 (248)
T ss_dssp SEEEEECC------CCSCCTTTCCEEEEESCCE----EEEECSCGGGSCHH
T ss_pred EEEEEECCCCCHHHHCCCCCCCCCEEEEECCCC----CHHHHHHHHCCCCC
T ss_conf 599996666024651367665401899967974----00005456316745
|
| >d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.30 E-value=5.3e-12 Score=103.00 Aligned_cols=118 Identities=17% Similarity=0.235 Sum_probs=100.0
Q ss_pred CCCHHHHHHHHHHHHCCCCCCCEEEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 99999999999998409999818999980098999999998629999870699997578887988999999999983089
Q 000384 394 YISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGG 473 (1590)
Q Consensus 394 ~~s~Kv~~L~~lL~~~~~~~~~~~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~l~~~~q~~vl~~Fr~g 473 (1590)
..|+|+..|.+++.... ..+.++|||++.+.+.+.+...+... .+..+..++|. ++..+|.+++++|.++
T Consensus 66 ~~S~K~~~l~~~l~~~~-~~g~kviIFs~~~~~~~~l~~~l~~~---~~~~~~~i~G~------~~~~~R~~~i~~F~~~ 135 (244)
T d1z5za1 66 RRSGKMIRTMEIIEEAL-DEGDKIAIFTQFVDMGKIIRNIIEKE---LNTEVPFLYGE------LSKKERDDIISKFQNN 135 (244)
T ss_dssp TTCHHHHHHHHHHHHHH-HTTCCEEEEESCHHHHHHHHHHHHHH---HCSCCCEECTT------SCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHC-CCCCCEEEEEECEEHHHHHHHHHHHH---CCCEEEEEECC------CCHHCCCHHHHHHHCC
T ss_conf 12068999999887641-46662599960100677899998761---35128999666------4200011045544301
Q ss_pred C-CEEE-EECCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHCCCCCCCCE
Q ss_conf 8-2199-9724322354578863899806999977999972112334862
Q 000384 474 K-VNLL-FATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQ 521 (1590)
Q Consensus 474 ~-~niL-VaTsvleeGIDIp~~~~VI~fD~p~s~~syiQr~GRArR~gs~ 521 (1590)
. ..+| ++|.++++|+|++.|+.||.||++||+..+.|+.||+.|.|++
T Consensus 136 ~~~~vll~~~~~~g~Glnl~~a~~vi~~~~~wn~~~~~Qa~~R~~R~Gq~ 185 (244)
T d1z5za1 136 PSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQT 185 (244)
T ss_dssp TTCCEEEEECCTTCCCCCCTTCSEEEECSCCSCTTTC-------------
T ss_pred CCCHHCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHCCEEEECCCC
T ss_conf 21001014311235662112001432047124467776542501564999
|
| >d1di2a_ d.50.1.1 (A:) Double-stranded RNA-binding protein A, second dsRBD {Xenopus laevis [TaxId: 8355]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: Double-stranded RNA-binding protein A, second dsRBD species: Xenopus laevis [TaxId: 8355]
Probab=99.30 E-value=1.5e-12 Score=107.08 Aligned_cols=68 Identities=19% Similarity=0.296 Sum_probs=59.6
Q ss_pred CCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEECCCCCCCCCHHHHHHHH
Q ss_conf 73135899987099999921476413444201136985544520238999999438733898289977744026559999
Q 000384 1495 GPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAALI 1574 (1590)
Q Consensus 1495 ~~k~~L~e~~~~~~~~~P~y~~~~~~~~~~~~~~~Gp~h~~~~~~F~~~v~v~~~~~~~~~~~g~~~~sKK~A~~~AA~~ 1574 (1590)
.|++.||||||+++|++|.|+++++ +||+|+ +.|+|.|.++ + ..+.|.| +|||+|||.||..
T Consensus 1 ~Pv~~LqE~~q~~~~~~P~Y~~~~~---------~G~~h~---~~F~~~v~v~----~-~~~~g~g-~sKK~Aeq~AA~~ 62 (69)
T d1di2a_ 1 MPVGSLQELAVQKGWRLPEYTVAQE---------SGPPHK---REFTITCRVE----T-FVETGSG-TSKQVAKRVAAEK 62 (69)
T ss_dssp CHHHHHHHHHHHHTCCCCEEEEEEE---------ESCGGG---CEEEEEEEET----T-EEEEEEE-SSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCCCCEEEEEEE---------ECCCCC---CCEEEEEEEE----E-EEEECCC-CCHHHHHHHHHHH
T ss_conf 9838999999975999983899984---------378777---4168999986----6-7876376-7299999999999
Q ss_pred HHHHHH
Q ss_conf 999998
Q 000384 1575 MLHELE 1580 (1590)
Q Consensus 1575 ~l~~l~ 1580 (1590)
||+.|+
T Consensus 63 aL~~L~ 68 (69)
T d1di2a_ 63 LLTKFK 68 (69)
T ss_dssp HHHHHH
T ss_pred HHHHHC
T ss_conf 999845
|
| >d2dixa1 d.50.1.1 (A:7-79) Interferon-inducible double stranded RNA-dependent protein kinase activator A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: Interferon-inducible double stranded RNA-dependent protein kinase activator A species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=8.3e-12 Score=101.55 Aligned_cols=70 Identities=20% Similarity=0.290 Sum_probs=60.8
Q ss_pred CCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEECCCCCCCCCHHHHHHH
Q ss_conf 87313589998709999992147641344420113698554452023899999943873389828997774402655999
Q 000384 1494 GGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAAL 1573 (1590)
Q Consensus 1494 ~~~k~~L~e~~~~~~~~~P~y~~~~~~~~~~~~~~~Gp~h~~~~~~F~~~v~v~~~~~~~~~~~g~~~~sKK~A~~~AA~ 1573 (1590)
.+|++.||||||++++ .|.|+++++ +||+|+ +.|+|.|+++ + ..+.|.| +|||+||+.||+
T Consensus 2 K~Pis~L~E~~qk~~~-~p~y~~~~~---------~Gp~h~---~~F~~~v~v~----~-~~~~g~g-~sKK~Aeq~AA~ 62 (73)
T d2dixa1 2 KTPIQVLHEYGMKTKN-IPVYECERS---------DVQIHV---PTFTFRVTVG----D-ITCTGEG-TSKKLAKHRAAE 62 (73)
T ss_dssp CCHHHHHHHHHHHTTC-CCEEEEEEE---------ECSSSS---CEEEEEEEET----T-EEEEECS-SCTTHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCC-CCEEEEEEE---------ECCCCC---CEEEEEEEEE----E-EEEEECC-CCHHHHHHHHHH
T ss_conf 5877999999996798-988998653---------589887---1799999998----8-9988614-659999999999
Q ss_pred HHHHHHHHC
Q ss_conf 999999874
Q 000384 1574 IMLHELERQ 1582 (1590)
Q Consensus 1574 ~~l~~l~~~ 1582 (1590)
.||..|+..
T Consensus 63 ~al~~L~~~ 71 (73)
T d2dixa1 63 AAINILKAN 71 (73)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHC
T ss_conf 999998742
|
| >d1uhza_ d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: staufen homolog 2 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.26 E-value=4.4e-12 Score=103.65 Aligned_cols=70 Identities=24% Similarity=0.338 Sum_probs=60.4
Q ss_pred CCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEECCCCCCCCCHHHHHHH
Q ss_conf 87313589998709999992147641344420113698554452023899999943873389828997774402655999
Q 000384 1494 GGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAAL 1573 (1590)
Q Consensus 1494 ~~~k~~L~e~~~~~~~~~P~y~~~~~~~~~~~~~~~Gp~h~~~~~~F~~~v~v~~~~~~~~~~~g~~~~sKK~A~~~AA~ 1573 (1590)
.+|++.||||||+++|++|.|+++++ +||+|+ +.|+|.|.|+ +. .++|.| +|||+||+.||+
T Consensus 6 ~~P~s~LqE~~Q~~~~~~P~Y~~~~~---------~g~~h~---~~F~~~v~v~----~~-~~~g~g-~SKK~Ae~~AA~ 67 (89)
T d1uhza_ 6 SGPISRLAQIQQARKEKEPDYILLSE---------RGMPRR---REFVMQVKVG----NE-VATGTG-PNKKIAKKNAAE 67 (89)
T ss_dssp SCHHHHHHHHHHHTTSCCCEEEEEEE---------ESCSTT---CEEEEEEEET----TE-EEEEEE-SSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHCCCCCCEEEECCC---------CCCCCC---EEEEEEEEEE----EE-ECCCCC-HHHHHHHHHHHH
T ss_conf 88199999999964999997985024---------456775---0699999996----56-402320-378999999999
Q ss_pred HHHHHHHH
Q ss_conf 99999987
Q 000384 1574 IMLHELER 1581 (1590)
Q Consensus 1574 ~~l~~l~~ 1581 (1590)
.||+.|..
T Consensus 68 ~aL~~l~~ 75 (89)
T d1uhza_ 68 AMLLQLGY 75 (89)
T ss_dssp HHHHHHTS
T ss_pred HHHHHHCC
T ss_conf 99999676
|
| >d1ekza_ d.50.1.1 (A:) Staufen, domain III {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: Staufen, domain III species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.26 E-value=4.1e-12 Score=103.88 Aligned_cols=71 Identities=23% Similarity=0.282 Sum_probs=61.2
Q ss_pred CCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEECCCCCCCCCHHHHHH
Q ss_conf 68731358999870999999214764134442011369855445202389999994387338982899777440265599
Q 000384 1493 KGGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAA 1572 (1590)
Q Consensus 1493 ~~~~k~~L~e~~~~~~~~~P~y~~~~~~~~~~~~~~~Gp~h~~~~~~F~~~v~v~~~~~~~~~~~g~~~~sKK~A~~~AA 1572 (1590)
..+|++.||||||+++++ |.|+++++ +||+|+ +.|+|+|+++ + ..+.|.| +|||.|||.||
T Consensus 6 ~k~Pvs~L~E~~q~~~~~-~~y~~~~~---------~G~~h~---~~F~~~v~v~----~-~~~~g~G-~SKK~Aeq~AA 66 (76)
T d1ekza_ 6 KKSPISQVHEIGIKRNMT-VHFKVLRE---------EGPAHM---KNFITACIVG----S-IVTEGEG-NGKKVSKKRAA 66 (76)
T ss_dssp CSCHHHHHHHHHHHTTCC-CEEEESSS---------CCSSSC---SCSSEEEEET----T-EEEEECC-CSTTSSSHHHH
T ss_pred CCCHHHHHHHHHHHCCCC-CEEEEEEE---------ECCCCC---EEEEEEEEEE----E-EEEEECC-CCHHHHHHHHH
T ss_conf 889899999999967989-70899971---------379887---0899999982----1-4766056-76999999999
Q ss_pred HHHHHHHHHC
Q ss_conf 9999999874
Q 000384 1573 LIMLHELERQ 1582 (1590)
Q Consensus 1573 ~~~l~~l~~~ 1582 (1590)
..||..|++.
T Consensus 67 ~~al~~L~~l 76 (76)
T d1ekza_ 67 EKMLVELQKL 76 (76)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHHCC
T ss_conf 9999998709
|
| >d1whqa_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: ATP-dependent RNA helicase A, Dhx9 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.24 E-value=3.9e-12 Score=104.03 Aligned_cols=79 Identities=20% Similarity=0.313 Sum_probs=65.0
Q ss_pred CCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEECCCCCCCCCHHHHHH
Q ss_conf 68731358999870999999214764134442011369855445202389999994387338982899777440265599
Q 000384 1493 KGGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAA 1572 (1590)
Q Consensus 1493 ~~~~k~~L~e~~~~~~~~~P~y~~~~~~~~~~~~~~~Gp~h~~~~~~F~~~v~v~~~~~~~~~~~g~~~~sKK~A~~~AA 1572 (1590)
..|+|+.||||||++++ .|.|++.+ +||+|. +.|+|.|.|... .+.+.|.| +|||+|||.||
T Consensus 5 ~~~~Ks~LqE~~qk~k~-~P~Y~~~~----------~G~~h~---~~F~~~v~v~g~---~~~~~g~g-~sKK~AEq~AA 66 (99)
T d1whqa_ 5 SSGIKNFLYAWCGKRKM-TPAYEIRA----------VGNKNR---QKFMCEVRVEGF---NYAGMGNS-TNKKDAQSNAA 66 (99)
T ss_dssp CCSSHHHHHHHHHHTTC-CCEEEEEE----------EECSSS---EEEEEEEECTTC---SCCEEEEE-SSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCC-CCEEEEEC----------CCCCCC---CEEEEEEEECCC---CCEECCCC-CCHHHHHHHHH
T ss_conf 76688999999986899-98699840----------247888---608999985165---43100577-52889999999
Q ss_pred HHHHHHHHHCCEEECCC
Q ss_conf 99999998749164247
Q 000384 1573 LIMLHELERQGKIIISS 1589 (1590)
Q Consensus 1573 ~~~l~~l~~~~~~~~~~ 1589 (1590)
+.||..|.+.|.+..++
T Consensus 67 ~~al~~L~~~~~~~~~~ 83 (99)
T d1whqa_ 67 RDFVNYLVRINEVKSEE 83 (99)
T ss_dssp HHHHHHHHHHTSSCTTT
T ss_pred HHHHHHHHHCCCCCHHH
T ss_conf 99999999859998544
|
| >d2cpna1 d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: TAR RNA-binding protein 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=6.4e-12 Score=102.38 Aligned_cols=68 Identities=24% Similarity=0.312 Sum_probs=59.5
Q ss_pred CCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEECCCCCCCCCHHHHHHH
Q ss_conf 87313589998709999992147641344420113698554452023899999943873389828997774402655999
Q 000384 1494 GGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAAL 1573 (1590)
Q Consensus 1494 ~~~k~~L~e~~~~~~~~~P~y~~~~~~~~~~~~~~~Gp~h~~~~~~F~~~v~v~~~~~~~~~~~g~~~~sKK~A~~~AA~ 1573 (1590)
.|||+.||||||+++|++|.|+++++ +||+|. +.|++.|.+. + +.+.|.| +|||+|||.||+
T Consensus 9 ~npks~LqE~~q~~~~~~P~Y~~~~~---------~g~~h~---~~F~~~v~v~----~-~~~~g~G-~SKK~Aeq~AA~ 70 (76)
T d2cpna1 9 CNPVGALQELVVQKGWRLPEYTVTQE---------SGPAHR---KEFTMTCRVE----R-FIEIGSG-TSKKLAKRNAAA 70 (76)
T ss_dssp CCHHHHHHHHHHHHTCCCCEEEEEEE---------ECCSSS---CEEEEEEEET----T-EEEEEEE-SSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCCCCCEEEEEEE---------ECCCCC---CCEEEEEEEC----C-EEECCCC-CCHHHHHHHHHH
T ss_conf 89789999999974999997998664---------326777---5279999954----2-2411364-529999999999
Q ss_pred HHHHHH
Q ss_conf 999999
Q 000384 1574 IMLHEL 1579 (1590)
Q Consensus 1574 ~~l~~l 1579 (1590)
.||..|
T Consensus 71 ~aL~~L 76 (76)
T d2cpna1 71 KMLLRV 76 (76)
T ss_dssp HHHHHH
T ss_pred HHHHHC
T ss_conf 999869
|
| >d1o0wa2 d.50.1.1 (A:168-236) RNase III, C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: RNase III, C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.22 E-value=6.1e-12 Score=102.57 Aligned_cols=68 Identities=21% Similarity=0.262 Sum_probs=59.5
Q ss_pred CCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEECCCCCCCCCHHHHHHHH
Q ss_conf 73135899987099999921476413444201136985544520238999999438733898289977744026559999
Q 000384 1495 GPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAALI 1574 (1590)
Q Consensus 1495 ~~k~~L~e~~~~~~~~~P~y~~~~~~~~~~~~~~~Gp~h~~~~~~F~~~v~v~~~~~~~~~~~g~~~~sKK~A~~~AA~~ 1574 (1590)
|+|+.||||||+++|++|.|+++++ +||+|. +.|++.|.++ +...+.|.| +|||+|||.||+.
T Consensus 1 d~Ks~LqE~~Qk~~~~~P~Y~~~~~---------~g~~h~---~~F~~~v~v~----~~~~~~g~g-~sKK~Aeq~AA~~ 63 (69)
T d1o0wa2 1 DYKTALQEIVQSEHKVPPEYILVRT---------EKNDGD---RIFVVEVRVN----GKTIATGKG-RTKKEAEKEAARI 63 (69)
T ss_dssp CHHHHHHHHHHHHHSSCCEEEEEEE---------ECCTTS---CEEEEEEEET----TEEEEEEEE-SSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCCCCEEEEEEE---------ECCCCC---CEEEEEEEEC----CEEEEEEEE-CCHHHHHHHHHHH
T ss_conf 9178999999974999997999996---------688888---4299999989----999999872-8999999999999
Q ss_pred HHHHH
Q ss_conf 99999
Q 000384 1575 MLHEL 1579 (1590)
Q Consensus 1575 ~l~~l 1579 (1590)
||+.|
T Consensus 64 aL~~L 68 (69)
T d1o0wa2 64 AYEKL 68 (69)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99986
|
| >d2nuga2 d.50.1.1 (A:151-218) RNase III, C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: RNase III, C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=99.21 E-value=4.4e-12 Score=103.64 Aligned_cols=68 Identities=19% Similarity=0.257 Sum_probs=59.3
Q ss_pred CCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEECCCCCCCCCHHHHHHHH
Q ss_conf 73135899987099999921476413444201136985544520238999999438733898289977744026559999
Q 000384 1495 GPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAALI 1574 (1590)
Q Consensus 1495 ~~k~~L~e~~~~~~~~~P~y~~~~~~~~~~~~~~~Gp~h~~~~~~F~~~v~v~~~~~~~~~~~g~~~~sKK~A~~~AA~~ 1574 (1590)
|+|+.||||||+++|++|.|+++++ +||+|+ +.|++.|.++ + ..+.|.| +|||.|||.||+.
T Consensus 1 d~Ks~LqE~~q~~~~~~P~Y~~~~~---------~g~~h~---~~F~~~v~v~----~-~~~~g~g-~sKK~Aeq~AA~~ 62 (68)
T d2nuga2 1 DYKTILQEITQKRWKERPEYRLISV---------EGPHHK---KKFIVEAKIK----E-YRTLGEG-KSKKEAEQRAAEE 62 (68)
T ss_dssp CHHHHHHHHHHHHHSCCCEEEEEEE---------ESCGGG---CEEEEEEEET----T-EEEEEEE-SSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCCCCEEEEEEE---------ECCCCC---CEEEEEEEEC----C-EEEEEEC-CCHHHHHHHHHHH
T ss_conf 9078999999975999998999984---------188878---4799999988----7-7999950-9999999999999
Q ss_pred HHHHHH
Q ss_conf 999998
Q 000384 1575 MLHELE 1580 (1590)
Q Consensus 1575 ~l~~l~ 1580 (1590)
||+.|+
T Consensus 63 aL~~Lk 68 (68)
T d2nuga2 63 LIKLLE 68 (68)
T ss_dssp HHHHHC
T ss_pred HHHHHC
T ss_conf 999739
|
| >d1qu6a1 d.50.1.1 (A:1-90) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: dsRNA-dependent protein kinase pkr species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.21 E-value=8.3e-12 Score=101.54 Aligned_cols=74 Identities=18% Similarity=0.200 Sum_probs=62.1
Q ss_pred CCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEECCCCCCCCCHHHHHH
Q ss_conf 68731358999870999999214764134442011369855445202389999994387338982899777440265599
Q 000384 1493 KGGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAA 1572 (1590)
Q Consensus 1493 ~~~~k~~L~e~~~~~~~~~P~y~~~~~~~~~~~~~~~Gp~h~~~~~~F~~~v~v~~~~~~~~~~~g~~~~sKK~A~~~AA 1572 (1590)
.+++|+.||||||++++ .|.|.++++ +||+|+ +.|+|.|.|+...++ .|.| +|||+||+.||
T Consensus 12 ~~~y~s~LqE~~Qk~~~-~p~y~~~~~---------~Gp~h~---~~F~v~v~v~~~~~~----~g~G-~sKK~Aeq~AA 73 (90)
T d1qu6a1 12 AGFFMEELNTYRQKQGV-VLKYQELPN---------SGPPHD---RRFTFQVIIDGREFP----EGEG-RSKKEAKNAAA 73 (90)
T ss_dssp SCSHHHHHHHHHHHHTC-CCEEEEEES---------CBTTTB---CCEEEEEESSSSCCC----EEEC-CSSHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCC-CCCEEEEEE---------ECCCCC---CEEEEEEEECCEEEE----CCCC-CCHHHHHHHHH
T ss_conf 77899999999998299-985799871---------079887---447999997756640----5678-76999999999
Q ss_pred HHHHHHHHHCCE
Q ss_conf 999999987491
Q 000384 1573 LIMLHELERQGK 1584 (1590)
Q Consensus 1573 ~~~l~~l~~~~~ 1584 (1590)
+.||+.|+++-.
T Consensus 74 ~~aL~~L~~~~~ 85 (90)
T d1qu6a1 74 KLAVEILNKEKK 85 (90)
T ss_dssp HHHHHHHHSCCS
T ss_pred HHHHHHHHHHCC
T ss_conf 999999983077
|
| >d1x49a1 d.50.1.1 (A:8-92) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: dsRNA-dependent protein kinase pkr species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.16 E-value=9.1e-12 Score=101.25 Aligned_cols=79 Identities=16% Similarity=0.172 Sum_probs=65.6
Q ss_pred CCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEECCCCCCCCCHHHHHHH
Q ss_conf 87313589998709999992147641344420113698554452023899999943873389828997774402655999
Q 000384 1494 GGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAAL 1573 (1590)
Q Consensus 1494 ~~~k~~L~e~~~~~~~~~P~y~~~~~~~~~~~~~~~Gp~h~~~~~~F~~~v~v~~~~~~~~~~~g~~~~sKK~A~~~AA~ 1573 (1590)
+++|+.||||||++++ .|.|+++++ +||+|. +.|+|.|.|+...++ .|.| +|||+||+.||+
T Consensus 7 ~~yk~~L~E~~Qk~~~-~~~y~~~~~---------~Gp~h~---~~F~~~v~v~g~~~~----~g~g-~sKK~Aeq~AA~ 68 (85)
T d1x49a1 7 GFYMDKLNKYRQMHGV-AITYKELST---------SGPPHD---RRFTFQVLIDEKEFP----EAKG-RSKQEARNAAAK 68 (85)
T ss_dssp THHHHHHHHHHHHHTC-CEEEEEEEE---------ESCSSS---CEEEEEEEESSCCCC----CEEE-SSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCC-CCEEEEEEE---------CCCCCC---CEEEEEEECCCEEEE----CCCC-CCHHHHHHHHHH
T ss_conf 3399999999986699-975899872---------189887---458998841846750----5566-559999999999
Q ss_pred HHHHHHHHCCEEECCCC
Q ss_conf 99999987491642479
Q 000384 1574 IMLHELERQGKIIISSS 1590 (1590)
Q Consensus 1574 ~~l~~l~~~~~~~~~~~ 1590 (1590)
.||..|++.+..-..+|
T Consensus 69 ~aL~~L~~~~~~~s~~s 85 (85)
T d1x49a1 69 LAVDILDNENKVDCHTS 85 (85)
T ss_dssp HHHHHHTTTCCCCSSCC
T ss_pred HHHHHHHHCCCCCCCCC
T ss_conf 99999987176565579
|
| >d1x48a1 d.50.1.1 (A:8-83) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: dsRNA-dependent protein kinase pkr species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.12 E-value=4.8e-11 Score=95.72 Aligned_cols=76 Identities=14% Similarity=0.090 Sum_probs=63.4
Q ss_pred CHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEECCCCCCCCCHHHHHHHHH
Q ss_conf 31358999870999999214764134442011369855445202389999994387338982899777440265599999
Q 000384 1496 PRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAALIM 1575 (1590)
Q Consensus 1496 ~k~~L~e~~~~~~~~~P~y~~~~~~~~~~~~~~~Gp~h~~~~~~F~~~v~v~~~~~~~~~~~g~~~~sKK~A~~~AA~~~ 1575 (1590)
++++||||||++++++ .|++++ +||+|. +.|+|.|.|+... ...|.| +|||+|||.||+.|
T Consensus 1 Y~s~L~E~~Qk~~~~~-~~~~~~----------~G~~h~---~~F~~~v~v~~~~----~~~g~G-~sKK~Aeq~AA~~A 61 (76)
T d1x48a1 1 YIGLVNSFAQKKKLSV-NYEQCE----------PNSELP---QRFICKCKIGQTM----YGTGSG-VTKQEAKQLAAKEA 61 (76)
T ss_dssp HHHHHHHHHHHTTCCE-EEEECC----------CSSSSS---CCEEEEEEESSCE----EEEEEE-SSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCC-CCCCCC----------CCCCCC---CCEEEEEEECCEE----ECCCCC-CHHHHHHHHHHHHH
T ss_conf 9489999999868997-644477----------698999---7589999999999----578576-27999999999999
Q ss_pred HHHHHHCCEEECCCC
Q ss_conf 999987491642479
Q 000384 1576 LHELERQGKIIISSS 1590 (1590)
Q Consensus 1576 l~~l~~~~~~~~~~~ 1590 (1590)
|+.|........++|
T Consensus 62 l~~L~~~~~~~~~~s 76 (76)
T d1x48a1 62 YQKLLKSPPKTAGTS 76 (76)
T ss_dssp HHHHHHSCCCCCCCC
T ss_pred HHHHHCCCCCCCCCC
T ss_conf 999970488776789
|
| >d1qu6a2 d.50.1.1 (A:91-179) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: dsRNA-dependent protein kinase pkr species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.12 E-value=6.8e-11 Score=94.60 Aligned_cols=72 Identities=14% Similarity=0.172 Sum_probs=61.7
Q ss_pred CCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEECCCCCCCCCHHHHHH
Q ss_conf 68731358999870999999214764134442011369855445202389999994387338982899777440265599
Q 000384 1493 KGGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAA 1572 (1590)
Q Consensus 1493 ~~~~k~~L~e~~~~~~~~~P~y~~~~~~~~~~~~~~~Gp~h~~~~~~F~~~v~v~~~~~~~~~~~g~~~~sKK~A~~~AA 1572 (1590)
.+|||++||||||+++++ |.|++.+ +||+|. +.|+|.|.|++..++. |.| +|||+||+.||
T Consensus 13 ~~n~~s~L~E~~Qk~~~~-~~y~~~~----------~g~~h~---~~F~~~v~i~g~~~~~----g~G-~sKK~Akq~AA 73 (89)
T d1qu6a2 13 MGNYIGLINRIAQKKRLT-VNYEQCA----------SGVHGP---EGFHYKCKMGQKEYSI----GTG-STKQEAKQLAA 73 (89)
T ss_dssp CCCCHHHHHHHHHHSCCE-EEEEEEE----------ECSSSS---SEEEEEEEEETTBCCE----EEE-SSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCC-CCEEEEC----------CCCCCC---CCEEEEEEECCCCCCC----CCC-CHHHHHHHHHH
T ss_conf 328999999999962887-6426631----------578788---7569999989703666----565-26999999999
Q ss_pred HHHHHHHHHCC
Q ss_conf 99999998749
Q 000384 1573 LIMLHELERQG 1583 (1590)
Q Consensus 1573 ~~~l~~l~~~~ 1583 (1590)
+.||..|+.+.
T Consensus 74 ~~Al~~L~~~~ 84 (89)
T d1qu6a2 74 KLAYLQILSEE 84 (89)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHCCC
T ss_conf 99999997037
|
| >d1whna_ d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.08 E-value=2.3e-10 Score=90.53 Aligned_cols=69 Identities=22% Similarity=0.280 Sum_probs=55.3
Q ss_pred CCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEECCCCCCCCCHHHHHH
Q ss_conf 68731358999870999999214764134442011369855445202389999994387338982899777440265599
Q 000384 1493 KGGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAA 1572 (1590)
Q Consensus 1493 ~~~~k~~L~e~~~~~~~~~P~y~~~~~~~~~~~~~~~Gp~h~~~~~~F~~~v~v~~~~~~~~~~~g~~~~sKK~A~~~AA 1572 (1590)
..+||+.||||||+++|++|.|+++++ + |. +.|++.|+|+ +.....|.+.+|||+|||.||
T Consensus 25 ~~~pKs~LqE~~Qk~~~~~P~Y~~~~~----------~--~~---~~F~~~V~v~----g~~~~s~~g~~SKK~AEq~AA 85 (128)
T d1whna_ 25 QITPKMCLLEWCRREKLPQPVYETVQR----------T--ID---RMFCSVVTVA----EQKYQSTLWDKSKKLAEQTAA 85 (128)
T ss_dssp TCCHHHHHHHHHHHTTCCCCCCCEEEC----------S--SS---CCEEEEEEET----TEEEEESSCBSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCCCCEEEEEEC----------C--CC---CCCEEEEEEC----CEEEECCCCCCCHHHHHHHHH
T ss_conf 998789999999863999976887622----------5--57---7777999988----847651677453899999999
Q ss_pred HHHHHHHH
Q ss_conf 99999998
Q 000384 1573 LIMLHELE 1580 (1590)
Q Consensus 1573 ~~~l~~l~ 1580 (1590)
+.||..|.
T Consensus 86 ~~AL~~Lg 93 (128)
T d1whna_ 86 IVCLRSQG 93 (128)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHC
T ss_conf 99999838
|
| >d1x47a1 d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: Dgcr8 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.08 E-value=1.2e-10 Score=92.78 Aligned_cols=73 Identities=23% Similarity=0.239 Sum_probs=58.9
Q ss_pred CCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEECCCCCCCCCHH
Q ss_conf 34446873135899987099999921476413444201136985544520238999999438733898289977744026
Q 000384 1489 INMKKGGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSF 1568 (1590)
Q Consensus 1489 ~~~~~~~~k~~L~e~~~~~~~~~P~y~~~~~~~~~~~~~~~Gp~h~~~~~~F~~~v~v~~~~~~~~~~~g~~~~sKK~A~ 1568 (1590)
+|....+|++.||||||++++..|.|.++.. +|++| .|++.|.++ +...+.|.| +|||.||
T Consensus 4 ~n~~~K~p~s~LqE~~Qk~~~~~p~Y~~~~~---------~g~~~-----~F~~~v~i~----g~~~~~g~G-~sKK~Ae 64 (85)
T d1x47a1 4 INPNGKSEVCILHEYMQRVLKVRPVYNFFEC---------ENPSE-----PFGASVTID----GVTYGSGTA-SSKKLAK 64 (85)
T ss_dssp CCTTCCCHHHHHHHHHHHHTCSCCEEEEEEC---------SSSSC-----CEEEEEEET----TEEEEEEEE-SSHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCCCEEEEEC---------CCCCC-----CEEEEEEEC----CEEEECCCC-CHHHHHH
T ss_conf 3889959889999999982999997378754---------78988-----889999999----999744784-1299999
Q ss_pred HHHHHHHHHHHH
Q ss_conf 559999999998
Q 000384 1569 DSAALIMLHELE 1580 (1590)
Q Consensus 1569 ~~AA~~~l~~l~ 1580 (1590)
+.||+.||..|.
T Consensus 65 q~AA~~AL~~L~ 76 (85)
T d1x47a1 65 NKAARATLEILI 76 (85)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999998
|
| >d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=98.84 E-value=5.9e-09 Score=79.86 Aligned_cols=100 Identities=22% Similarity=0.215 Sum_probs=78.9
Q ss_pred CCEEEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 81899998009899999999862999987069999757888798899999999998308982199972432235457886
Q 000384 414 QVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNC 493 (1590)
Q Consensus 414 ~~~~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~l~~~~q~~vl~~Fr~g~~niLVaTsvleeGIDIp~~ 493 (1590)
+.+++|||.++..+..++..|.. .+.++..+||. +...++ ++|++|+.++||||+++|.|+|+ ++
T Consensus 36 ~g~~~~F~~s~~~~~~~a~~L~~----~g~~V~~l~~~------~~~~e~----~~~~~~~~~~~~~t~~~~~~~~~-~~ 100 (299)
T d1yksa2 36 KRPTAWFLPSIRAANVMAASLRK----AGKSVVVLNRK------TFEREY----PTIKQKKPDFILATDIAEMGANL-CV 100 (299)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHH----TTCCEEECCSS------SCC------------CCCSEEEESSSTTCCTTC-CC
T ss_pred CCCEEEEECCHHHHHHHHHHHHH----CCCEEEEECCC------CCHHHH----HHHHCCCCCEEEEECHHHHCEEC-CC
T ss_conf 99899994999999999999986----69809997686------757677----66515776789970036536412-73
Q ss_pred CEEEEC---------CC----------CCCHHHHHHHHCCCCCCCCE-EEEEECC
Q ss_conf 389980---------69----------99977999972112334862-9997312
Q 000384 494 SYVIRF---------DL----------PKTVSSYIQSRGRARQHNSQ-FILMLER 528 (1590)
Q Consensus 494 ~~VI~f---------D~----------p~s~~syiQr~GRArR~gs~-~i~lv~~ 528 (1590)
.+||.+ |. |-+..+-.||+|||||.+.+ +.++++.
T Consensus 101 ~~vid~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~qr~gr~gr~~~~~~~~~~y~ 155 (299)
T d1yksa2 101 ERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYS 155 (299)
T ss_dssp SEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEEC
T ss_pred EEEEECCCEECEEEECCCCCEEEEEEEECCHHHHHHHCCCCCCCCCCCEEEEEEC
T ss_conf 3898668500003565878826873242689999986466666678860899938
|
| >d2b7va1 d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: dsRNA-specific editase 1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.79 E-value=2.6e-09 Score=82.59 Aligned_cols=68 Identities=19% Similarity=0.121 Sum_probs=56.1
Q ss_pred CCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEECCCCCCCCCHHHHHH
Q ss_conf 68731358999870999999214764134442011369855445202389999994387338982899777440265599
Q 000384 1493 KGGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAA 1572 (1590)
Q Consensus 1493 ~~~~k~~L~e~~~~~~~~~P~y~~~~~~~~~~~~~~~Gp~h~~~~~~F~~~v~v~~~~~~~~~~~g~~~~sKK~A~~~AA 1572 (1590)
..+|++.|||||+ .+.|+++++ +||+|. +.|++.|.|+.. .++|.| +|||+||+.||
T Consensus 3 ~Knpv~~L~E~~~-----~~~y~~~~~---------~G~~h~---~~F~~~v~v~~~-----~~~g~G-~SKK~Ak~~AA 59 (71)
T d2b7va1 3 GKNPVMILNELRP-----GLKYDFLSE---------SGESHA---KSFVMSVVVDGQ-----FFEGSG-RNKKLAKARAA 59 (71)
T ss_dssp SSCHHHHHHHHCC-----SCEEEEEEC---------CCCTTT---CCEEEEEECSSC-----EEEEEE-SSHHHHHHHHH
T ss_pred CCCHHHHHHHHCC-----CCEEEEEEE---------ECCCCC---CEEEEEEEECCE-----EEEECC-CCHHHHHHHHH
T ss_conf 8798999999765-----986899251---------689989---739999999999-----998168-98899999999
Q ss_pred HHHHHHHHHCC
Q ss_conf 99999998749
Q 000384 1573 LIMLHELERQG 1583 (1590)
Q Consensus 1573 ~~~l~~l~~~~ 1583 (1590)
+.||..|....
T Consensus 60 ~~aL~~L~~~~ 70 (71)
T d2b7va1 60 QSALATVFNLH 70 (71)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHCCC
T ss_conf 99999987468
|
| >d1whqa_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: ATP-dependent RNA helicase A, Dhx9 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.76 E-value=3.3e-08 Score=74.20 Aligned_cols=70 Identities=14% Similarity=0.109 Sum_probs=60.7
Q ss_pred CCCHHHHHHHHHHHCCCCCEEEEEEECCE--EEEEEEEEECCEEEEEEEEECCHHHHHHHHHHHHHHHHHHH
Q ss_conf 89806699999873198221345320751--89999999969489999995899999999999999996543
Q 000384 1356 ELPPLRELIELCDSLGYFVKENCTLKGEM--VHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEVC 1425 (1590)
Q Consensus 1356 ~~~p~~~L~e~~~~~~~~~~~~~~~~g~~--~~~~~~V~v~~~~~~~~g~g~skk~Ak~~AA~~AL~~L~~~ 1425 (1590)
..++|+.||||||+.++.+.|.+...|+. +.|+|.|.++|..+.+.|.|.|||+|++.||+.||+.|.+.
T Consensus 5 ~~~~Ks~LqE~~qk~k~~P~Y~~~~~G~~h~~~F~~~v~v~g~~~~~~g~g~sKK~AEq~AA~~al~~L~~~ 76 (99)
T d1whqa_ 5 SSGIKNFLYAWCGKRKMTPAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNAARDFVNYLVRI 76 (99)
T ss_dssp CCSSHHHHHHHHHHTTCCCEEEEEEEECSSSEEEEEEEECTTCSCCEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCEEEEEEEECCCCCEECCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 766889999999868999869984024788860899998516543100577528899999999999999985
|
| >d2cpna1 d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: TAR RNA-binding protein 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.74 E-value=5.9e-08 Score=72.28 Aligned_cols=70 Identities=24% Similarity=0.358 Sum_probs=58.0
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCCCEEE--EEEECCE--EEEEEEEEECCEEEEEEEEECCHHHHHHHHHHHHHHHH
Q ss_conf 899888980669999987319822134--5320751--89999999969489999995899999999999999996
Q 000384 1351 TPDKLELPPLRELIELCDSLGYFVKEN--CTLKGEM--VHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKL 1422 (1590)
Q Consensus 1351 ~~~~~~~~p~~~L~e~~~~~~~~~~~~--~~~~g~~--~~~~~~V~v~~~~~~~~g~g~skk~Ak~~AA~~AL~~L 1422 (1590)
.+.....|||+.||||||+.++.+|.| +...|+. +.|+|.|.+++ +.+.|.|.|||+|++.||+.||+.|
T Consensus 3 ~~~~~~~npks~LqE~~q~~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~~--~~~~g~G~SKK~Aeq~AA~~aL~~L 76 (76)
T d2cpna1 3 SPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVER--FIEIGSGTSKKLAKRNAAAKMLLRV 76 (76)
T ss_dssp CCCCCCCCHHHHHHHHHHHHTCCCCEEEEEEEECCSSSCEEEEEEEETT--EEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCEEEEEEECC--EEECCCCCCHHHHHHHHHHHHHHHC
T ss_conf 9766788978999999997499999799866432677752799999542--2411364529999999999999869
|
| >d1x47a1 d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: Dgcr8 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.73 E-value=5e-08 Score=72.84 Aligned_cols=69 Identities=20% Similarity=0.084 Sum_probs=58.5
Q ss_pred CCCCHHHHHHHHHHHCCCCCEEEEEE--ECCEEEEEEEEEECCEEEEEEEEECCHHHHHHHHHHHHHHHHHH
Q ss_conf 88980669999987319822134532--07518999999996948999999589999999999999999654
Q 000384 1355 LELPPLRELIELCDSLGYFVKENCTL--KGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEV 1424 (1590)
Q Consensus 1355 ~~~~p~~~L~e~~~~~~~~~~~~~~~--~g~~~~~~~~V~v~~~~~~~~g~g~skk~Ak~~AA~~AL~~L~~ 1424 (1590)
..++|++.||||||+.+..+|.|... .|+...|.+.|.++|. ..+.|.|.|||.|++.||+.||+.|.-
T Consensus 7 ~~K~p~s~LqE~~Qk~~~~~p~Y~~~~~~g~~~~F~~~v~i~g~-~~~~g~G~sKK~Aeq~AA~~AL~~L~~ 77 (85)
T d1x47a1 7 NGKSEVCILHEYMQRVLKVRPVYNFFECENPSEPFGASVTIDGV-TYGSGTASSKKLAKNKAARATLEILIP 77 (85)
T ss_dssp TCCCHHHHHHHHHHHHTCSCCEEEEEECSSSSCCEEEEEEETTE-EEEEEEESSHHHHHHHHHHHHHHHHCS
T ss_pred CCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCEEEEEEECCE-EEECCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99598899999999829999973787547898888999999999-974478412999999999999999988
|
| >d1t4oa_ d.50.1.1 (A:) RNase III, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: RNase III, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.72 E-value=5.8e-09 Score=79.96 Aligned_cols=71 Identities=14% Similarity=0.034 Sum_probs=55.3
Q ss_pred CCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEECCCCCCCCCHHHHHH
Q ss_conf 68731358999870999999214764134442011369855445202389999994387338982899777440265599
Q 000384 1493 KGGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAA 1572 (1590)
Q Consensus 1493 ~~~~k~~L~e~~~~~~~~~P~y~~~~~~~~~~~~~~~Gp~h~~~~~~F~~~v~v~~~~~~~~~~~g~~~~sKK~A~~~AA 1572 (1590)
..++|+.||||||+.+.. |.|+++++ .||.| +.|++.|.+ ..+...+.|.| +|||.|+|.||
T Consensus 5 d~~~K~~L~e~~~~~g~~-P~Y~~~~~---------~~~~~----~~f~v~~~v---~~~~~~~~g~g-~SKK~AEq~AA 66 (81)
T d1t4oa_ 5 DMNAKRQLYSLIGYASLR-LHYVTVKK---------PTAVD----PNSIVECRV---GDGTVLGTGVG-RNIKIAGIRAA 66 (81)
T ss_dssp CTTHHHHHHHHHCCGGGC-CEEEEEEC---------CCSSC----CCEEEEEEC---TTCCEEEEEEE-SSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHCCCCC-CEEEEECC---------CCCCC----CCEEEEEEE---ECCCEEEECCC-CHHHHHHHHHH
T ss_conf 568999999998308998-57997014---------78788----988999999---66825876453-30108999999
Q ss_pred HHHHHHHHH
Q ss_conf 999999987
Q 000384 1573 LIMLHELER 1581 (1590)
Q Consensus 1573 ~~~l~~l~~ 1581 (1590)
+.||+.+.-
T Consensus 67 ~~aL~~~~~ 75 (81)
T d1t4oa_ 67 ENALRDKKM 75 (81)
T ss_dssp HHHHHCHHH
T ss_pred HHHHHHCCH
T ss_conf 999983228
|
| >d2dmya1 d.50.1.1 (A:8-91) Spermatid perinuclear RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: Spermatid perinuclear RNA-binding protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.71 E-value=5.6e-09 Score=80.07 Aligned_cols=66 Identities=14% Similarity=0.125 Sum_probs=53.8
Q ss_pred CCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEECCCCCCCCCHHHHHHH
Q ss_conf 87313589998709999992147641344420113698554452023899999943873389828997774402655999
Q 000384 1494 GGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAAL 1573 (1590)
Q Consensus 1494 ~~~k~~L~e~~~~~~~~~P~y~~~~~~~~~~~~~~~Gp~h~~~~~~F~~~v~v~~~~~~~~~~~g~~~~sKK~A~~~AA~ 1573 (1590)
.+|.+.|||++ +.|.|+++.+ +||+|. +.|++.|+|++ . .+.|.| +|||+|||.||.
T Consensus 12 ~n~~~~L~e~~-----~~~~Y~~~~~---------~Gp~h~---~~F~~~v~v~g----~-~~~g~G-~SKK~Aeq~AA~ 68 (84)
T d2dmya1 12 MNALMRLNQIR-----PGLQYKLLSQ---------SGPVHA---PVFTMSVDVDG----T-TYEASG-PSKKTAKLHVAV 68 (84)
T ss_dssp THHHHHHHHHS-----CSCCCEEEEE---------ESCSSS---CEEEEEEEETT----E-EEEEEE-SSHHHHHHHHHH
T ss_pred CCHHHHHHHHC-----CCCEEEEEEE---------ECCCCC---CEEEEEEEECC----E-EEECCC-CCHHHHHHHHHH
T ss_conf 49999998707-----8986999770---------689889---75999999999----9-998589-998999999999
Q ss_pred HHHHHHHHC
Q ss_conf 999999874
Q 000384 1574 IMLHELERQ 1582 (1590)
Q Consensus 1574 ~~l~~l~~~ 1582 (1590)
.||+.|+-.
T Consensus 69 ~aL~~L~~~ 77 (84)
T d2dmya1 69 KVLQAMGYP 77 (84)
T ss_dssp HHHHHHTCC
T ss_pred HHHHHHCCC
T ss_conf 999994889
|
| >d1whna_ d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.68 E-value=6.2e-08 Score=72.10 Aligned_cols=68 Identities=15% Similarity=0.073 Sum_probs=57.0
Q ss_pred CCCHHHHHHHHHHHCCCCCE-EEEEEECCEEEEEEEEEECCEEEEEEEE-ECCHHHHHHHHHHHHHHHHHH
Q ss_conf 89806699999873198221-3453207518999999996948999999-589999999999999999654
Q 000384 1356 ELPPLRELIELCDSLGYFVK-ENCTLKGEMVHAELRLQLKDVLLVGEGQ-ERSRKAAKGKAASQLLKKLEV 1424 (1590)
Q Consensus 1356 ~~~p~~~L~e~~~~~~~~~~-~~~~~~g~~~~~~~~V~v~~~~~~~~g~-g~skk~Ak~~AA~~AL~~L~~ 1424 (1590)
..+||+.||||||+.++.+| |.+...+....|++.|.++|. ..+.+. +.|||+|++.||+.||+.|..
T Consensus 25 ~~~pKs~LqE~~Qk~~~~~P~Y~~~~~~~~~~F~~~V~v~g~-~~~s~~g~~SKK~AEq~AA~~AL~~Lg~ 94 (128)
T d1whna_ 25 QITPKMCLLEWCRREKLPQPVYETVQRTIDRMFCSVVTVAEQ-KYQSTLWDKSKKLAEQTAAIVCLRSQGL 94 (128)
T ss_dssp TCCHHHHHHHHHHHTTCCCCCCCEEECSSSCCEEEEEEETTE-EEEESSCBSSHHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEEEEEECCE-EEECCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 998789999999863999976887622557777799998884-7651677453899999999999998389
|
| >d1qu6a2 d.50.1.1 (A:91-179) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: dsRNA-dependent protein kinase pkr species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.65 E-value=6.5e-08 Score=71.95 Aligned_cols=69 Identities=10% Similarity=-0.025 Sum_probs=60.5
Q ss_pred CCCCHHHHHHHHHHHCCCCCEEEEEEECCE--EEEEEEEEECCEEEEEEEEECCHHHHHHHHHHHHHHHHHH
Q ss_conf 889806699999873198221345320751--8999999996948999999589999999999999999654
Q 000384 1355 LELPPLRELIELCDSLGYFVKENCTLKGEM--VHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEV 1424 (1590)
Q Consensus 1355 ~~~~p~~~L~e~~~~~~~~~~~~~~~~g~~--~~~~~~V~v~~~~~~~~g~g~skk~Ak~~AA~~AL~~L~~ 1424 (1590)
...|||+.|+||||+.+..+.+...+.|+. +.|.|.|.++|. ..+.|.|.|||+||+.||+.||..|..
T Consensus 12 ~~~n~~s~L~E~~Qk~~~~~~y~~~~~g~~h~~~F~~~v~i~g~-~~~~g~G~sKK~Akq~AA~~Al~~L~~ 82 (89)
T d1qu6a2 12 SMGNYIGLINRIAQKKRLTVNYEQCASGVHGPEGFHYKCKMGQK-EYSIGTGSTKQEAKQLAAKLAYLQILS 82 (89)
T ss_dssp CCCCCHHHHHHHHHHSCCEEEEEEEEECSSSSSEEEEEEEEETT-BCCEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHCCCCCCEEEECCCCCCCCCEEEEEEECCC-CCCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 53289999999999628876426631578788756999998970-366656526999999999999999970
|
| >d1x48a1 d.50.1.1 (A:8-83) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: dsRNA-dependent protein kinase pkr species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.65 E-value=7.8e-08 Score=71.37 Aligned_cols=65 Identities=14% Similarity=0.080 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHCCCCCEEEEEEECCE--EEEEEEEEECCEEEEEEEEECCHHHHHHHHHHHHHHHHHH
Q ss_conf 06699999873198221345320751--8999999996948999999589999999999999999654
Q 000384 1359 PLRELIELCDSLGYFVKENCTLKGEM--VHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEV 1424 (1590)
Q Consensus 1359 p~~~L~e~~~~~~~~~~~~~~~~g~~--~~~~~~V~v~~~~~~~~g~g~skk~Ak~~AA~~AL~~L~~ 1424 (1590)
+++.|+||||+.+..+.+...+.|++ +.|+|.|.|+|. ..+.|.|.|||+|++.||+.||+.|..
T Consensus 1 Y~s~L~E~~Qk~~~~~~~~~~~~G~~h~~~F~~~v~v~~~-~~~~g~G~sKK~Aeq~AA~~Al~~L~~ 67 (76)
T d1x48a1 1 YIGLVNSFAQKKKLSVNYEQCEPNSELPQRFICKCKIGQT-MYGTGSGVTKQEAKQLAAKEAYQKLLK 67 (76)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCCSSSSSCCEEEEEEESSC-EEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCE-EECCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 9489999999868997644477698999758999999999-957857627999999999999999970
|
| >d1o0wa2 d.50.1.1 (A:168-236) RNase III, C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: RNase III, C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.63 E-value=1e-07 Score=70.53 Aligned_cols=64 Identities=19% Similarity=0.145 Sum_probs=55.7
Q ss_pred CHHHHHHHHHHHCCCCCEEE-E-EEECCE--EEEEEEEEECCEEEEEEEEECCHHHHHHHHHHHHHHHH
Q ss_conf 80669999987319822134-5-320751--89999999969489999995899999999999999996
Q 000384 1358 PPLRELIELCDSLGYFVKEN-C-TLKGEM--VHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKL 1422 (1590)
Q Consensus 1358 ~p~~~L~e~~~~~~~~~~~~-~-~~~g~~--~~~~~~V~v~~~~~~~~g~g~skk~Ak~~AA~~AL~~L 1422 (1590)
|||+.|+||||+.++.+|.+ + ...|++ +.|++.|+++|. ..+.|.|.|||+|++.||+.||+.|
T Consensus 1 d~Ks~LqE~~Qk~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~~~-~~~~g~g~sKK~Aeq~AA~~aL~~L 68 (69)
T d1o0wa2 1 DYKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGK-TIATGKGRTKKEAEKEAARIAYEKL 68 (69)
T ss_dssp CHHHHHHHHHHHHHSSCCEEEEEEEECCTTSCEEEEEEEETTE-EEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCEEEEEEEECCE-EEEEEEECCHHHHHHHHHHHHHHHH
T ss_conf 9178999999974999997999996688888429999998999-9999872899999999999999986
|
| >d1di2a_ d.50.1.1 (A:) Double-stranded RNA-binding protein A, second dsRBD {Xenopus laevis [TaxId: 8355]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: Double-stranded RNA-binding protein A, second dsRBD species: Xenopus laevis [TaxId: 8355]
Probab=98.62 E-value=1.4e-07 Score=69.37 Aligned_cols=64 Identities=27% Similarity=0.334 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHHCCCCCEEE-E-EEECCE--EEEEEEEEECCEEEEEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf 80669999987319822134-5-320751--899999999694899999958999999999999999965
Q 000384 1358 PPLRELIELCDSLGYFVKEN-C-TLKGEM--VHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLE 1423 (1590)
Q Consensus 1358 ~p~~~L~e~~~~~~~~~~~~-~-~~~g~~--~~~~~~V~v~~~~~~~~g~g~skk~Ak~~AA~~AL~~L~ 1423 (1590)
.||+.|||+||+.++.+|.| + ...|+. +.|+|.|.+++. .+.|.|.|||+|++.||+.||+.|+
T Consensus 1 ~Pv~~LqE~~q~~~~~~P~Y~~~~~~G~~h~~~F~~~v~v~~~--~~~g~g~sKK~Aeq~AA~~aL~~L~ 68 (69)
T d1di2a_ 1 MPVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETF--VETGSGTSKQVAKRVAAEKLLTKFK 68 (69)
T ss_dssp CHHHHHHHHHHHHTCCCCEEEEEEEESCGGGCEEEEEEEETTE--EEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCEEEEEEEEEE--EEECCCCCHHHHHHHHHHHHHHHHC
T ss_conf 9838999999975999983899984378777416899998667--8763767299999999999999845
|
| >d1uhza_ d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: staufen homolog 2 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.61 E-value=1.8e-07 Score=68.53 Aligned_cols=67 Identities=18% Similarity=0.210 Sum_probs=56.9
Q ss_pred CCCHHHHHHHHHHHCCCCCEEE-E-EEECCE--EEEEEEEEECCEEEEEEEEECCHHHHHHHHHHHHHHHHHH
Q ss_conf 8980669999987319822134-5-320751--8999999996948999999589999999999999999654
Q 000384 1356 ELPPLRELIELCDSLGYFVKEN-C-TLKGEM--VHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEV 1424 (1590)
Q Consensus 1356 ~~~p~~~L~e~~~~~~~~~~~~-~-~~~g~~--~~~~~~V~v~~~~~~~~g~g~skk~Ak~~AA~~AL~~L~~ 1424 (1590)
..+|++.|+||||++++.+|.| + ...|++ +.|+|.|++++. ...|.|.|||+||+.||+.||+.|..
T Consensus 5 ~~~P~s~LqE~~Q~~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~~~--~~~g~g~SKK~Ae~~AA~~aL~~l~~ 75 (89)
T d1uhza_ 5 SSGPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNE--VATGTGPNKKIAKKNAAEAMLLQLGY 75 (89)
T ss_dssp SSCHHHHHHHHHHHTTSCCCEEEEEEEESCSTTCEEEEEEEETTE--EEEEEESSHHHHHHHHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCCEEEEEEEEEEEE--ECCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 888199999999964999997985024456775069999999656--40232037899999999999999676
|
| >d2dixa1 d.50.1.1 (A:7-79) Interferon-inducible double stranded RNA-dependent protein kinase activator A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: Interferon-inducible double stranded RNA-dependent protein kinase activator A species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.60 E-value=1e-07 Score=70.48 Aligned_cols=66 Identities=21% Similarity=0.267 Sum_probs=56.6
Q ss_pred CCHHHHHHHHHHHCCCCCEEEE-EEECCE--EEEEEEEEECCEEEEEEEEECCHHHHHHHHHHHHHHHHHH
Q ss_conf 9806699999873198221345-320751--8999999996948999999589999999999999999654
Q 000384 1357 LPPLRELIELCDSLGYFVKENC-TLKGEM--VHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEV 1424 (1590)
Q Consensus 1357 ~~p~~~L~e~~~~~~~~~~~~~-~~~g~~--~~~~~~V~v~~~~~~~~g~g~skk~Ak~~AA~~AL~~L~~ 1424 (1590)
++||+.|+||||+.+..+.+.+ ...|+. +.|++.|.+++ ..+.|.|.|||+|++.||+.||..|+.
T Consensus 2 K~Pis~L~E~~qk~~~~p~y~~~~~~Gp~h~~~F~~~v~v~~--~~~~g~g~sKK~Aeq~AA~~al~~L~~ 70 (73)
T d2dixa1 2 KTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGD--ITCTGEGTSKKLAKHRAAEAAINILKA 70 (73)
T ss_dssp CCHHHHHHHHHHHTTCCCEEEEEEEECSSSSCEEEEEEEETT--EEEEECSSCTTHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCEEEEEEEEEE--EEEEECCCCHHHHHHHHHHHHHHHHHH
T ss_conf 587799999999679898899865358988717999999988--998861465999999999999999874
|
| >d1uila_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: ATP-dependent RNA helicase A, Dhx9 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.57 E-value=1.1e-07 Score=70.09 Aligned_cols=69 Identities=12% Similarity=-0.007 Sum_probs=58.7
Q ss_pred CCHHHHHHHHHHHCCCCCEEEEEEECCE--EEEEEEEEEC----CEEEEEEEEECCHHHHHHHHHHHHHHHHHHH
Q ss_conf 9806699999873198221345320751--8999999996----9489999995899999999999999996543
Q 000384 1357 LPPLRELIELCDSLGYFVKENCTLKGEM--VHAELRLQLK----DVLLVGEGQERSRKAAKGKAASQLLKKLEVC 1425 (1590)
Q Consensus 1357 ~~p~~~L~e~~~~~~~~~~~~~~~~g~~--~~~~~~V~v~----~~~~~~~g~g~skk~Ak~~AA~~AL~~L~~~ 1425 (1590)
.|||+.||||||+.+..+.|.+...|++ +.|+|.|.++ +..+.+.|.|.|||+|++.||+.||+.|...
T Consensus 26 ~n~Ks~LqE~~Qk~k~~p~Y~i~~~Gp~H~~~F~~~v~i~~~~~~~~~~~~G~G~sKK~AEq~AA~~~l~~L~~~ 100 (113)
T d1uila_ 26 ENAKARLNQYFQKEKIQGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQSCALSLVRQLYHL 100 (113)
T ss_dssp HHHHHHHHHHHHHSCCCCCCEEEEESCSTTCEEEEEEEEEETTTTEEEEEECCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCCCCCEEEEEECCCCCCEEEEEEEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 479999999998679999659855426889959999999421259767764062609999999999999999974
|
| >d1qu6a1 d.50.1.1 (A:1-90) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: dsRNA-dependent protein kinase pkr species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.56 E-value=6.2e-08 Score=72.10 Aligned_cols=70 Identities=21% Similarity=0.134 Sum_probs=59.7
Q ss_pred CCCCCHHHHHHHHHHHCCCCCEEEE-EEECCE--EEEEEEEEECCEEEEEEEEECCHHHHHHHHHHHHHHHHHH
Q ss_conf 8889806699999873198221345-320751--8999999996948999999589999999999999999654
Q 000384 1354 KLELPPLRELIELCDSLGYFVKENC-TLKGEM--VHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEV 1424 (1590)
Q Consensus 1354 ~~~~~p~~~L~e~~~~~~~~~~~~~-~~~g~~--~~~~~~V~v~~~~~~~~g~g~skk~Ak~~AA~~AL~~L~~ 1424 (1590)
..+.+||+.|+||||++++.+.+.+ ...|++ +.|+|.|.++|. ..+.|.|.|||+|++.||+.||+.|..
T Consensus 10 ~~~~~y~s~LqE~~Qk~~~~p~y~~~~~~Gp~h~~~F~v~v~v~~~-~~~~g~G~sKK~Aeq~AA~~aL~~L~~ 82 (90)
T d1qu6a1 10 LSAGFFMEELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGR-EFPEGEGRSKKEAKNAAAKLAVEILNK 82 (90)
T ss_dssp SSSCSHHHHHHHHHHHHTCCCEEEEEESCBTTTBCCEEEEEESSSS-CCCEEECCSSHHHHHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCEEEEEEEECCE-EEECCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 9977899999999998299985799871079887447999997756-640567876999999999999999983
|
| >d1x49a1 d.50.1.1 (A:8-92) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: dsRNA-dependent protein kinase pkr species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.56 E-value=8.2e-08 Score=71.19 Aligned_cols=69 Identities=14% Similarity=0.107 Sum_probs=59.7
Q ss_pred CCCCHHHHHHHHHHHCCCCCEEEE-EEECCE--EEEEEEEEECCEEEEEEEEECCHHHHHHHHHHHHHHHHHH
Q ss_conf 889806699999873198221345-320751--8999999996948999999589999999999999999654
Q 000384 1355 LELPPLRELIELCDSLGYFVKENC-TLKGEM--VHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEV 1424 (1590)
Q Consensus 1355 ~~~~p~~~L~e~~~~~~~~~~~~~-~~~g~~--~~~~~~V~v~~~~~~~~g~g~skk~Ak~~AA~~AL~~L~~ 1424 (1590)
-+.++|+.|+||||+.++.+.+.. ...|++ +.|+|.|+++|. ..+.|.|.|||+|++.||+.||+.|..
T Consensus 5 ~~~~yk~~L~E~~Qk~~~~~~y~~~~~~Gp~h~~~F~~~v~v~g~-~~~~g~g~sKK~Aeq~AA~~aL~~L~~ 76 (85)
T d1x49a1 5 TPGFYMDKLNKYRQMHGVAITYKELSTSGPPHDRRFTFQVLIDEK-EFPEAKGRSKQEARNAAAKLAVDILDN 76 (85)
T ss_dssp CTTHHHHHHHHHHHHHTCCEEEEEEEEESCSSSCEEEEEEEESSC-CCCCEEESSHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCEEEEEEECCCE-EEECCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 813399999999986699975899872189887458998841846-750556655999999999999999987
|
| >d2b7ta1 d.50.1.1 (A:1-73) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: dsRNA-specific editase 1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.55 E-value=4e-08 Score=73.56 Aligned_cols=64 Identities=17% Similarity=0.107 Sum_probs=49.9
Q ss_pred CHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEECCCCCCCCCHHHHHHHHH
Q ss_conf 31358999870999999214764134442011369855445202389999994387338982899777440265599999
Q 000384 1496 PRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAALIM 1575 (1590)
Q Consensus 1496 ~k~~L~e~~~~~~~~~P~y~~~~~~~~~~~~~~~Gp~h~~~~~~F~~~v~v~~~~~~~~~~~g~~~~sKK~A~~~AA~~~ 1575 (1590)
+.+.|+|+ .+.|.|+++++ +||+|. +.|++.|+|++. . +.|.| +|||+|||.||+.|
T Consensus 9 ~l~~L~e~-----~~~~~y~~~~~---------~G~~h~---~~F~~~v~v~~~---~--~~g~G-~SKK~Aeq~AA~~a 65 (73)
T d2b7ta1 9 ALMQLNEI-----KPGLQYMLLSQ---------TGPVHA---PLFVMSVEVNGQ---V--FEGSG-PTKKKAKLHAAEKA 65 (73)
T ss_dssp HHHHHHHH-----CSCCEEEEEEE---------ECSSSS---CEEEEEEESSSS---E--EEEEE-SSHHHHHHHHHHHH
T ss_pred HHHHHHHC-----CCCCEEEEEEE---------ECCCCC---CEEEEEEEECCE---E--EECCC-CCHHHHHHHHHHHH
T ss_conf 99999851-----89987999871---------289999---649999999999---9--99188-74999999999999
Q ss_pred HHHHHHC
Q ss_conf 9999874
Q 000384 1576 LHELERQ 1582 (1590)
Q Consensus 1576 l~~l~~~ 1582 (1590)
|+.|.+.
T Consensus 66 L~~l~~~ 72 (73)
T d2b7ta1 66 LRSFVQF 72 (73)
T ss_dssp HHHHHTC
T ss_pred HHHHHHC
T ss_conf 9998538
|
| >d2nuga2 d.50.1.1 (A:151-218) RNase III, C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: RNase III, C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=98.54 E-value=2.1e-07 Score=68.12 Aligned_cols=64 Identities=23% Similarity=0.209 Sum_probs=54.6
Q ss_pred CHHHHHHHHHHHCCCCCEEE--EEEECCE--EEEEEEEEECCEEEEEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf 80669999987319822134--5320751--899999999694899999958999999999999999965
Q 000384 1358 PPLRELIELCDSLGYFVKEN--CTLKGEM--VHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLE 1423 (1590)
Q Consensus 1358 ~p~~~L~e~~~~~~~~~~~~--~~~~g~~--~~~~~~V~v~~~~~~~~g~g~skk~Ak~~AA~~AL~~L~ 1423 (1590)
|||+.|+||||+.++.+|.| ....|+. +.|+|.|.+++. .+.|.|.|||.|++.||+.||+.|+
T Consensus 1 d~Ks~LqE~~q~~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~~~--~~~g~g~sKK~Aeq~AA~~aL~~Lk 68 (68)
T d2nuga2 1 DYKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEY--RTLGEGKSKKEAEQRAAEELIKLLE 68 (68)
T ss_dssp CHHHHHHHHHHHHHSCCCEEEEEEEESCGGGCEEEEEEEETTE--EEEEEESSHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCEEEEEEEECCE--EEEEECCCHHHHHHHHHHHHHHHHC
T ss_conf 9078999999975999998999984188878479999998877--9999509999999999999999739
|
| >d1t4oa_ d.50.1.1 (A:) RNase III, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: RNase III, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.41 E-value=4.6e-07 Score=65.54 Aligned_cols=74 Identities=22% Similarity=0.233 Sum_probs=59.5
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCEEEEEEECCE--EEEEEEEEECCEEEEEEEEECCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98889806699999873198221345320751--899999999694899999958999999999999999965432
Q 000384 1353 DKLELPPLRELIELCDSLGYFVKENCTLKGEM--VHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEVCE 1426 (1590)
Q Consensus 1353 ~~~~~~p~~~L~e~~~~~~~~~~~~~~~~g~~--~~~~~~V~v~~~~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~ 1426 (1590)
+.+..|+|+.|++||++.+..+.|.+...|+. ..|.+.|.+.+....+.|.|.|||.|++.||+.||+.+...+
T Consensus 2 ~~id~~~K~~L~e~~~~~g~~P~Y~~~~~~~~~~~~f~v~~~v~~~~~~~~g~g~SKK~AEq~AA~~aL~~~~~l~ 77 (81)
T d1t4oa_ 2 DKLDMNAKRQLYSLIGYASLRLHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALRDKKMLD 77 (81)
T ss_dssp CCCCTTHHHHHHHHHCCGGGCCEEEEEECCCSSCCCEEEEEECTTCCEEEEEEESSHHHHHHHHHHHHHHCHHHHH
T ss_pred CCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCEEEEEEEECCCEEEECCCCHHHHHHHHHHHHHHHHCCHHH
T ss_conf 8555689999999983089985799701478788988999999668258764533010899999999998322888
|
| >d1ekza_ d.50.1.1 (A:) Staufen, domain III {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: Staufen, domain III species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.37 E-value=1e-07 Score=70.39 Aligned_cols=69 Identities=19% Similarity=0.209 Sum_probs=58.0
Q ss_pred CCCCCHHHHHHHHHHHCCCCCEEEE-EEECCE--EEEEEEEEECCEEEEEEEEECCHHHHHHHHHHHHHHHHHH
Q ss_conf 8889806699999873198221345-320751--8999999996948999999589999999999999999654
Q 000384 1354 KLELPPLRELIELCDSLGYFVKENC-TLKGEM--VHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEV 1424 (1590)
Q Consensus 1354 ~~~~~p~~~L~e~~~~~~~~~~~~~-~~~g~~--~~~~~~V~v~~~~~~~~g~g~skk~Ak~~AA~~AL~~L~~ 1424 (1590)
...++|++.|+||||++++.+.+.+ ...|++ +.|+|.|.+++ ..+.|.|.|||.||+.||+.||+.|+.
T Consensus 4 ~~~k~Pvs~L~E~~q~~~~~~~y~~~~~~G~~h~~~F~~~v~v~~--~~~~g~G~SKK~Aeq~AA~~al~~L~~ 75 (76)
T d1ekza_ 4 GDKKSPISQVHEIGIKRNMTVHFKVLREEGPAHMKNFITACIVGS--IVTEGEGNGKKVSKKRAAEKMLVELQK 75 (76)
T ss_dssp CCCSCHHHHHHHHHHHTTCCCEEEESSSCCSSSCSCSSEEEEETT--EEEEECCCSTTSSSHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCEEEEEEEEEEE--EEEEECCCCHHHHHHHHHHHHHHHHHC
T ss_conf 778898999999999679897089997137988708999999821--476605676999999999999999870
|
| >d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Bacillus subtilis [TaxId: 1423]
Probab=98.24 E-value=1.4e-05 Score=54.14 Aligned_cols=152 Identities=22% Similarity=0.249 Sum_probs=97.6
Q ss_pred CCCHHHHHHHHH-HHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHH---HHHHHHHHHCCCC
Q ss_conf 994889999999-724898999089983999999999999999770799729999935755599---9999998616983
Q 000384 45 IPRIYQLKVFEV-AKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVH---QQYDVIRVHTDFE 120 (1590)
Q Consensus 45 ~pR~yQ~e~le~-~l~~n~Ii~~~TGsGKTliaillI~~~l~~~~~~~~~~~vlvLvPtv~Lv~---Qq~~~i~~~~~~~ 120 (1590)
.+|+|..+++-. ++.+.-|.-+.||=|||+++.+++.-..- .+++ |-+++..--|+. +|...+-.++|++
T Consensus 78 G~RhyDVQLiGgi~L~~G~iaem~TGEGKTL~a~l~a~l~al-----~g~~-vhvvTvNdyLA~RDae~m~~iy~~lGls 151 (273)
T d1tf5a3 78 GMFPFKVQLMGGVALHDGNIAEMKTGEGKTLTSTLPVYLNAL-----TGKG-VHVVTVNEYLASRDAEQMGKIFEFLGLT 151 (273)
T ss_dssp SCCCCHHHHHHHHHHHTTSEEECCTTSCHHHHHHHHHHHHHT-----TSSC-EEEEESSHHHHHHHHHHHHHHHHHTTCC
T ss_pred CEEEEHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHH-----CCCC-CEEEECCCCCCCHHHHHHHHHHHHCCCC
T ss_conf 647730478999998765530206887510399999999996-----6998-5697157300331245776799982987
Q ss_pred EEEEECCCCCCCCCHHHHHHHCCCCCEEEECHHHH-HHHHHHCCC------CCCCEEEEEEECCCCCCCC---CC-----
Q ss_conf 58986688877302278898307896999859999-999972176------7654218998464100389---90-----
Q 000384 121 VEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQIL-LDALRKAFL------SLDIVCFIVIDECHHATGN---HP----- 185 (1590)
Q Consensus 121 v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~L-l~~L~~~~~------~l~~i~LIIiDEaH~~~~~---~~----- 185 (1590)
|+....++..+. ++..=.++|+.+|..-| .+.|+.... ....+.+.|+||++.+.-+ .|
T Consensus 152 vg~~~~~~~~~~------r~~~Y~~di~Ygt~~e~~fDyLrd~~~~~~~~~~~r~~~~aIvDEvDsiliDeartpliisg 225 (273)
T d1tf5a3 152 VGLNLNSMSKDE------KREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISG 225 (273)
T ss_dssp EEECCTTSCHHH------HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEE
T ss_pred CCCCCCCCCHHH------HHHHHHCCCEECCHHHHHHHHCCHHHHCCHHHHCCCCCCEEEEECCHHHHHHCCCCCEEECC
T ss_conf 345655457777------77776078355025555444411433258666456888789997534662534688558536
Q ss_pred ----HHHH-HHHHHHCCCCCCCEEEEECCCC
Q ss_conf ----8999-9999730899980999805577
Q 000384 186 ----YTKI-MKEFYHKSDNKPKVFGMTASPV 211 (1590)
Q Consensus 186 ----~~~i-mk~~~~~~~~~priLgLTATP~ 211 (1590)
.+.| ...|++ .-+++-|||+|-.
T Consensus 226 ~~~~~a~it~q~~f~---~y~~l~gmtgta~ 253 (273)
T d1tf5a3 226 QSMTLATITFQNYFR---MYEKLAGMTGTAK 253 (273)
T ss_dssp EEEEEEEEEHHHHHT---TSSEEEEEESCCG
T ss_pred CCCCHHHHHHHHHHH---HHHHHHCCCCCCH
T ss_conf 864154644999999---9999857746307
|
| >d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Bacillus subtilis [TaxId: 1423]
Probab=98.23 E-value=1.5e-05 Score=53.96 Aligned_cols=129 Identities=12% Similarity=0.098 Sum_probs=90.3
Q ss_pred CHHHHHHHHHHHHCCCCCCCEEEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 99999999999840999981899998009899999999862999987069999757888798899999999998308982
Q 000384 396 STKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKV 475 (1590)
Q Consensus 396 s~Kv~~L~~lL~~~~~~~~~~~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~l~~~~q~~vl~~Fr~g~~ 475 (1590)
..|..++++.+.... ..+..++|++.++.....++.+|.. .++....++.. .. +++..+-+..-..-
T Consensus 17 ~eK~~AIi~eV~~~~-~~grPVLIgT~SIe~SE~ls~~L~~----~gi~h~vLnAk-------~~-~~Ea~II~~Ag~~g 83 (175)
T d1tf5a4 17 EGKFKAVAEDVAQRY-MTGQPVLVGTVAVETSELISKLLKN----KGIPHQVLNAK-------NH-EREAQIIEEAGQKG 83 (175)
T ss_dssp HHHHHHHHHHHHHHH-HHTCCEEEEESCHHHHHHHHHHHHT----TTCCCEEECSS-------CH-HHHHHHHTTTTSTT
T ss_pred HHHHHHHHHHHHHHH-HCCCCEEEEECCHHHHHHHHHHHHH----CCCCCEEEHHH-------HH-HHHHHHHHHCCCCC
T ss_conf 999999999999999-6599889996819999999999997----59971221022-------68-99888887513798
Q ss_pred EEEEECCCCCCCCCCCC--------CCEEEECCCCCCHHHHHHHHCCCCCCCCE--EEEEECCCHHHHHHHH
Q ss_conf 19997243223545788--------63899806999977999972112334862--9997312237766321
Q 000384 476 NLLFATDVIEEGMHVPN--------CSYVIRFDLPKTVSSYIQSRGRARQHNSQ--FILMLERSERSVTDTA 537 (1590)
Q Consensus 476 niLVaTsvleeGIDIp~--------~~~VI~fD~p~s~~syiQr~GRArR~gs~--~i~lv~~~E~~~~~~~ 537 (1590)
.|.|||+++++|.||.- --+||.-..+.+.+-..|.+||++|.|.. +.+++.-++..|+.+.
T Consensus 84 ~VtIATNmAGRGtDikl~~~v~~~GGLhVI~t~~~~s~Rid~Ql~GR~gRQGdpGs~~~~~sleD~l~~~f~ 155 (175)
T d1tf5a4 84 AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDELMRRFG 155 (175)
T ss_dssp CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSSGGGSSH
T ss_pred CEEEHHHHHHCCCCCCCHHHHHHCCCCEEEEECCCCCHHHHHHHHCCHHHHCCCCCCEEEEECCHHHHHHHH
T ss_conf 166445588708875663889857985899840485266788884234420787451899990878999876
|
| >d2b7va1 d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: dsRNA-specific editase 1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.18 E-value=1.5e-06 Score=61.63 Aligned_cols=64 Identities=27% Similarity=0.265 Sum_probs=51.9
Q ss_pred CCCHHHHHHHHHHHCCCCCEEEEEEECCE--EEEEEEEEECCEEEEEEEEECCHHHHHHHHHHHHHHHHHH
Q ss_conf 89806699999873198221345320751--8999999996948999999589999999999999999654
Q 000384 1356 ELPPLRELIELCDSLGYFVKENCTLKGEM--VHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEV 1424 (1590)
Q Consensus 1356 ~~~p~~~L~e~~~~~~~~~~~~~~~~g~~--~~~~~~V~v~~~~~~~~g~g~skk~Ak~~AA~~AL~~L~~ 1424 (1590)
.+||++.|+|+|++..|. .+...|+. +.|+|.|.++|..+ .|.|.|||+||++||+.||+.|..
T Consensus 3 ~Knpv~~L~E~~~~~~y~---~~~~~G~~h~~~F~~~v~v~~~~~--~g~G~SKK~Ak~~AA~~aL~~L~~ 68 (71)
T d2b7va1 3 GKNPVMILNELRPGLKYD---FLSESGESHAKSFVMSVVVDGQFF--EGSGRNKKLAKARAAQSALATVFN 68 (71)
T ss_dssp SSCHHHHHHHHCCSCEEE---EEECCCCTTTCCEEEEEECSSCEE--EEEESSHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCCEEE---EEEEECCCCCCEEEEEEEECCEEE--EECCCCHHHHHHHHHHHHHHHHHC
T ss_conf 879899999976598689---925168998973999999999999--816898899999999999999874
|
| >d1u04a1 b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: SH3-like barrel superfamily: PAZ domain family: PAZ domain domain: Argonaute homologue PF0537 species: Pyrococcus furiosus [TaxId: 2261]
Probab=97.98 E-value=2.7e-07 Score=67.27 Aligned_cols=98 Identities=8% Similarity=-0.064 Sum_probs=67.6
Q ss_pred ECCCCCCCCCCCCCCEEEECCCCCEEEEE---EECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEECC
Q ss_conf 12478767123358399931499248999---861799889999999999982399998654053013799850984035
Q 000384 882 HLANGSVDAKNLKDMVVLAIHTGRIYSIV---EIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQS 958 (1590)
Q Consensus 882 ~~~~~~~~~~~l~~~vV~~~~~~~~Y~v~---~i~~d~tp~s~f~~~~~~~~~ty~~Yy~~k~~~~i~~~~QPlL~~~~~ 958 (1590)
.|.+. +...+.+.+|++.||++.|.+. ++.++.||.+.|... ...||.+||+++|++ +.+||||..+.-
T Consensus 178 ~~~~~--~~k~lvG~iVLT~YNNkTy~~di~~dvd~~~~p~~t~~~~---~~~s~ieYYk~~Yni---D~~QPlLvs~~k 249 (322)
T d1u04a1 178 LKDIA--SPLKTVYKPCFEEYTKKPKLDHNQEIVKYWYNYHIERYWN---TPEAKLEFYRKFGQV---DLKQPAILAKFA 249 (322)
T ss_dssp EEETT--STTCCEEEECBCTTSSCBCEECCHHHHHHHHHHHHHHHCC---SHHHHHHHHHHHCSC---CTTSCEEEEEES
T ss_pred HHHHH--HHHHEECEEEEECCCCCCEECCHHHCCCCCCCCCCEECCC---CCCCHHHHHHHHCCC---CCCCCEEEEECC
T ss_conf 77765--2463016499750578661044120277565866222258---966399999984599---977855987513
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEECCCCHHHHH
Q ss_conf 775335655679999988988887888887235416534054034088999
Q 000384 959 HNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVK 1009 (1590)
Q Consensus 959 ~~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pe~~~~~~~p~~~~~ 1009 (1590)
.+.+ + ..+..++|+||||....++-.+-.
T Consensus 250 ~~~~---------~-------------~~~~~i~LiPELc~lTGltD~mR~ 278 (322)
T d1u04a1 250 SKIK---------K-------------NKNYKIYLLPQLVVPTYNAEQLES 278 (322)
T ss_dssp CC---------------------------CCCEEECTTTEEEEEEGGGC--
T ss_pred CCCC---------C-------------CCCEEEEECHHHHHHCCCCHHHHH
T ss_conf 4567---------9-------------984079971676555188378899
|
| >d2dmya1 d.50.1.1 (A:8-91) Spermatid perinuclear RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: Spermatid perinuclear RNA-binding protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.93 E-value=3.4e-05 Score=51.37 Aligned_cols=71 Identities=18% Similarity=0.235 Sum_probs=52.4
Q ss_pred CCCCCCC-CCCHHHHHHHHHHHCCCCCEEEEEEECCE--EEEEEEEEECCEEEEEEEEECCHHHHHHHHHHHHHHHHHH
Q ss_conf 4689988-89806699999873198221345320751--8999999996948999999589999999999999999654
Q 000384 1349 IVTPDKL-ELPPLRELIELCDSLGYFVKENCTLKGEM--VHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEV 1424 (1590)
Q Consensus 1349 ~i~~~~~-~~~p~~~L~e~~~~~~~~~~~~~~~~g~~--~~~~~~V~v~~~~~~~~g~g~skk~Ak~~AA~~AL~~L~~ 1424 (1590)
.++...+ .+||+..|+|+.+...| ..+...|++ +.|+|.|.++|.. ..|.|.|||+||+.||+.||+.|..
T Consensus 3 ~ld~~~~~~~n~~~~L~e~~~~~~Y---~~~~~~Gp~h~~~F~~~v~v~g~~--~~g~G~SKK~Aeq~AA~~aL~~L~~ 76 (84)
T d2dmya1 3 ILDSKAIDLMNALMRLNQIRPGLQY---KLLSQSGPVHAPVFTMSVDVDGTT--YEASGPSKKTAKLHVAVKVLQAMGY 76 (84)
T ss_dssp CCCCCSSSCTHHHHHHHHHSCSCCC---EEEEEESCSSSCEEEEEEEETTEE--EEEEESSHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCCCHHHHHHHHCCCCEE---EEEEEECCCCCCEEEEEEEECCEE--EECCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 3446545644999999870789869---997706898897599999999999--9858999899999999999999488
|
| >d2b7ta1 d.50.1.1 (A:1-73) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: dsRNA-specific editase 1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.80 E-value=7.7e-05 Score=48.61 Aligned_cols=63 Identities=19% Similarity=0.168 Sum_probs=46.0
Q ss_pred CCCHHHHHHHHHHHCCCCCEEE-EEEECCE--EEEEEEEEECCEEEEEEEEECCHHHHHHHHHHHHHHHHHH
Q ss_conf 8980669999987319822134-5320751--8999999996948999999589999999999999999654
Q 000384 1356 ELPPLRELIELCDSLGYFVKEN-CTLKGEM--VHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEV 1424 (1590)
Q Consensus 1356 ~~~p~~~L~e~~~~~~~~~~~~-~~~~g~~--~~~~~~V~v~~~~~~~~g~g~skk~Ak~~AA~~AL~~L~~ 1424 (1590)
+++|+..|+|+. ..+.+. +...|++ +.|+|.|.++|.. . .|.|.|||+||++||+.||+.|..
T Consensus 6 pK~~l~~L~e~~----~~~~y~~~~~~G~~h~~~F~~~v~v~~~~-~-~g~G~SKK~Aeq~AA~~aL~~l~~ 71 (73)
T d2b7ta1 6 PKNALMQLNEIK----PGLQYMLLSQTGPVHAPLFVMSVEVNGQV-F-EGSGPTKKKAKLHAAEKALRSFVQ 71 (73)
T ss_dssp SHHHHHHHHHHC----SCCEEEEEEEECSSSSCEEEEEEESSSSE-E-EEEESSHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHCC----CCCEEEEEEEECCCCCCEEEEEEEECCEE-E-ECCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 819999998518----99879998712899996499999999999-9-918874999999999999999853
|
| >d1si2a_ b.34.14.1 (A:) Eukaryotic translation initiation factor 2C 1, EIF2C1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: SH3-like barrel superfamily: PAZ domain family: PAZ domain domain: Eukaryotic translation initiation factor 2C 1, EIF2C1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.65 E-value=3.6e-05 Score=51.11 Aligned_cols=82 Identities=26% Similarity=0.413 Sum_probs=62.8
Q ss_pred CCCCCEEEECCC---CCEEEEEEECCCCCCCCCCCCCC---CCCCCHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCC
Q ss_conf 335839993149---92489998617998899999999---999823999986540530137998509840357753356
Q 000384 892 NLKDMVVLAIHT---GRIYSIVEIVNNSSAESPFDGNT---DDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLL 965 (1590)
Q Consensus 892 ~l~~~vV~~~~~---~~~Y~v~~i~~d~tp~s~f~~~~---~~~~~ty~~Yy~~k~~~~i~~~~QPlL~~~~~~~~~n~l 965 (1590)
.+++.-|.+.|. .+.|.|.++.++.++.+.|+... .+...|+.+||+++|++.|.+|++|+|.+..-.
T Consensus 36 ~Lkgl~V~~~h~~~~~r~y~I~gl~~~~~~~~~F~~~~~~g~~~~iTV~~YFk~~Y~~~L~~p~lP~l~vg~~~------ 109 (126)
T d1si2a_ 36 EIKGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLESGQTVECTVAQYFKQKYNLQLKYPHLPCLQVGQEQ------ 109 (126)
T ss_dssp HHTTCEEEECTTTTCCCEEEEEEEEEEETTTCEEECC------CEEEHHHHHHHTSCCCCSCTTSEEEEESCGG------
T ss_pred HHCCEEEEEECCCCCCCEEEEEECCCCCCCCCEEEECCCCCCCEEEEHHHHHHHHCCCCCCCCCCCEEEECCCC------
T ss_conf 83882999955898853699730237888775342015778852788999999871963479998889857899------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEECC
Q ss_conf 5567999998898888788888723541653405403
Q 000384 966 VNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVD 1002 (1590)
Q Consensus 966 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pe~~~~~~ 1002 (1590)
+ ..+||+|+|.+.+
T Consensus 110 --------------------k---~~~lP~Elc~I~~ 123 (126)
T d1si2a_ 110 --------------------K---HTYLPLEVCNIVA 123 (126)
T ss_dssp --------------------G---CEEEEGGGEEECC
T ss_pred --------------------C---CEEECCEEEEECC
T ss_conf --------------------9---8697668459568
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=97.29 E-value=0.0024 Score=37.32 Aligned_cols=70 Identities=21% Similarity=0.167 Sum_probs=51.4
Q ss_pred CCCHHHHHHHHHHHC-CCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHH
Q ss_conf 994889999999724-898999089983999999999999999770799729999935755599999999861
Q 000384 45 IPRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVH 116 (1590)
Q Consensus 45 ~pR~yQ~e~le~~l~-~n~Ii~~~TGsGKTliaillI~~~l~~~~~~~~~~~vlvLvPtv~Lv~Qq~~~i~~~ 116 (1590)
...+.|.+++..++. +-++|.++.|+|||.+..-++..+.+. ....+.++++++||..-+.+..+.+...
T Consensus 148 ~~~~~Q~~A~~~al~~~~~vI~G~pGTGKTt~i~~~l~~l~~~--~~~~~~~I~l~ApTgkAA~~L~e~~~~~ 218 (359)
T d1w36d1 148 DEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQM--ADGERCRIRLAAPTGKAAARLTESLGKA 218 (359)
T ss_dssp TSCCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHT--CSSCCCCEEEEBSSHHHHHHHHHHHTHH
T ss_pred CCCCHHHHHHHHHHCCCEEEEECCCCCCCEEHHHHHHHHHHHH--HHCCCCEEEEECCCHHHHHHHHHHHHHH
T ss_conf 5663899999999708859997689887521699999999998--7526982898437599999999888777
|
| >d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.21 E-value=0.0057 Score=34.45 Aligned_cols=129 Identities=13% Similarity=0.089 Sum_probs=91.3
Q ss_pred CHHHHHHHHHHHHCCCCCCCEEEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCC-
Q ss_conf 9999999999984099998189999800989999999986299998706999975788879889999999999830898-
Q 000384 396 STKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGK- 474 (1590)
Q Consensus 396 s~Kv~~L~~lL~~~~~~~~~~~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~l~~~~q~~vl~~Fr~g~- 474 (1590)
..|...+++-+.... ..+..++|.+.++.....|+++|.+ .++....+... .. +|+.-+- -..|.
T Consensus 17 ~~K~~Avv~ei~~~h-~~GqPVLVGT~SVe~SE~lS~lL~~----~gi~h~vLNAK-------~h-erEAeII-AqAG~~ 82 (219)
T d1nkta4 17 EAKYIAVVDDVAERY-AKGQPVLIGTTSVERSEYLSRQFTK----RRIPHNVLNAK-------YH-EQEATII-AVAGRR 82 (219)
T ss_dssp HHHHHHHHHHHHHHH-HTTCCEEEEESCHHHHHHHHHHHHH----TTCCCEEECSS-------CH-HHHHHHH-HTTTST
T ss_pred HHHHHHHHHHHHHHH-HCCCCEEEEECCHHHHHHHHHHHHH----HCCCHHCCCHH-------HH-HHHHHHH-HHCCCC
T ss_conf 999999999999999-6699889961759999999999987----25343224104-------68-8888999-964668
Q ss_pred CEEEEECCCCCCCCCCCC----------------------------------------------------CCEEEECCCC
Q ss_conf 219997243223545788----------------------------------------------------6389980699
Q 000384 475 VNLLFATDVIEEGMHVPN----------------------------------------------------CSYVIRFDLP 502 (1590)
Q Consensus 475 ~niLVaTsvleeGIDIp~----------------------------------------------------~~~VI~fD~p 502 (1590)
-.|-|||+++++|-||.= -=+||--...
T Consensus 83 GaVTIATNMAGRGTDI~LGgn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIGTErH 162 (219)
T d1nkta4 83 GGVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERH 162 (219)
T ss_dssp TCEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCC
T ss_pred CCEEEECCCCCCCCCEEECCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 83796200047877646468601556777654146731287899999987778889988877777774499679842556
Q ss_pred CCHHHHHHHHCCCCCCCCE--EEEEECCCHHHHHHHHH
Q ss_conf 9977999972112334862--99973122377663210
Q 000384 503 KTVSSYIQSRGRARQHNSQ--FILMLERSERSVTDTAL 538 (1590)
Q Consensus 503 ~s~~syiQr~GRArR~gs~--~i~lv~~~E~~~~~~~~ 538 (1590)
.|-+---|-+||+||.|.. ..+++.-++..|+.|..
T Consensus 163 eSrRIDnQLRGRsGRQGDPGsSrFflSLeDdLmr~F~~ 200 (219)
T d1nkta4 163 ESRRIDNQLRGRSGRQGDPGESRFYLSLGDELMRRFNG 200 (219)
T ss_dssp SSHHHHHHHHHTSSGGGCCEEEEEEEETTSHHHHHTTH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHCH
T ss_conf 65555533026664568975125677446799998783
|
| >d1u61a_ a.149.1.1 (A:) Hypothetical protein BC0111 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: RNase III domain-like superfamily: RNase III domain-like family: RNase III catalytic domain-like domain: Hypothetical protein BC0111 species: Bacillus cereus [TaxId: 1396]
Probab=97.00 E-value=0.00031 Score=44.00 Aligned_cols=33 Identities=9% Similarity=0.106 Sum_probs=27.7
Q ss_pred CCHHHHHHHHHHHCEEECCCCCHHHHHHHHHHHHC
Q ss_conf 72245689998760263279885889999886214
Q 000384 1313 PKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILS 1347 (1590)
Q Consensus 1313 pk~l~D~~Ea~iGAi~lDsg~~~~~~~~~~~~~l~ 1347 (1590)
++.++|+|||++||+|+|+|+ +.++.++...++
T Consensus 91 ~y~lad~fEAliGalYLd~~~--e~~~~~i~~~~~ 123 (127)
T d1u61a_ 91 TYRHSTAFEALIGYHHLLNNR--ERLDEIVYKAIA 123 (127)
T ss_dssp HHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCH--HHHHHHHHHHHH
T ss_conf 777605999999999991888--999999999998
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=96.76 E-value=0.0031 Score=36.46 Aligned_cols=70 Identities=13% Similarity=0.051 Sum_probs=53.9
Q ss_pred CCCHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHC
Q ss_conf 9948899999997248989990899839999999999999997707997299999357555999999998616
Q 000384 45 IPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT 117 (1590)
Q Consensus 45 ~pR~yQ~e~le~~l~~n~Ii~~~TGsGKTliaillI~~~l~~~~~~~~~~~vlvLvPtv~Lv~Qq~~~i~~~~ 117 (1590)
++.+=|.++++. ...+++|.++-|||||.+.+..+..++... ..+..+++++++|++++....+.+....
T Consensus 1 ~L~~eQ~~av~~-~~~~~lI~g~aGTGKTt~l~~rv~~ll~~~--~~~~~~ILvlt~tn~a~~~i~~~~~~~~ 70 (306)
T d1uaaa1 1 RLNPGQQQAVEF-VTGPCLVLAGAGSGKTRVITNKIAHLIRGC--GYQARHIAAVTFTNKAAREMKERVGQTL 70 (306)
T ss_dssp CCCHHHHHHHHC-CSSEEEECCCTTSCHHHHHHHHHHHHHHHH--CCCGGGEEEEESSHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHC-CCCCEEEEEECCCCHHHHHHHHHHHHHHHC--CCCHHHEEEEECCHHHHHHHHHHHHHHC
T ss_conf 969899999819-999989996288438999999999999956--9995578999686999999999999853
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=96.28 E-value=0.015 Score=31.32 Aligned_cols=70 Identities=11% Similarity=0.026 Sum_probs=53.5
Q ss_pred CCCCHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHH
Q ss_conf 9994889999999724898999089983999999999999999770799729999935755599999999861
Q 000384 44 FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVH 116 (1590)
Q Consensus 44 ~~pR~yQ~e~le~~l~~n~Ii~~~TGsGKTliaillI~~~l~~~~~~~~~~~vlvLvPtv~Lv~Qq~~~i~~~ 116 (1590)
..+.+=|.++++. ....++|.++-|||||.+++-.|.+++.. ...+...++++++++..+......+...
T Consensus 10 ~~L~~eQ~~~v~~-~~g~~lV~g~aGSGKTt~l~~ri~~ll~~--~~~~p~~il~lt~t~~aa~~~~~~~~~~ 79 (318)
T d1pjra1 10 AHLNKEQQEAVRT-TEGPLLIMAGAGSGKTRVLTHRIAYLMAE--KHVAPWNILAITFTNKAAREMRERVQSL 79 (318)
T ss_dssp TTSCHHHHHHHHC-CSSCEEEEECTTSCHHHHHHHHHHHHHHT--TCCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred HHCCHHHHHHHHC-CCCCEEEEECCCCCHHHHHHHHHHHHHHC--CCCCHHHEEEEECCHHHHHHHHHHHHHH
T ss_conf 8678999999829-99998999529866899999999999980--8998789375766498999899999862
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=96.17 E-value=0.026 Score=29.47 Aligned_cols=136 Identities=10% Similarity=0.046 Sum_probs=67.3
Q ss_pred CCHHHHHHHHHHHC-------CC-EEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHC
Q ss_conf 94889999999724-------89-89990899839999999999999997707997299999357555999999998616
Q 000384 46 PRIYQLKVFEVAKR-------RN-TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT 117 (1590)
Q Consensus 46 pR~yQ~e~le~~l~-------~n-~Ii~~~TGsGKTliaillI~~~l~~~~~~~~~~~vlvLvPtv~Lv~Qq~~~i~~~~ 117 (1590)
..|||.++++...+ .+ .|+++|.|+|||..|..++..+.. ........ +-. ......+....
T Consensus 3 ~yPw~~~~~~~l~~~~~~~~l~h~lLl~Gp~G~GKtt~a~~~a~~l~~---~~~~~~~~---~~~----~~~~~~i~~~~ 72 (207)
T d1a5ta2 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLC---QQPQGHKS---CGH----CRGCQLMQAGT 72 (207)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTC---SSCBTTBC---CSC----SHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHCCC---CCCCCCCC---CCC----CCHHHHHHHCC
T ss_conf 871219999999999985996737988899987599999999982101---01232122---334----20155654303
Q ss_pred CCCEEEEECCCCCCCCCHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 98358986688877302278898307896999859999999972176765421899846410038990899999997308
Q 000384 118 DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS 197 (1590)
Q Consensus 118 ~~~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~Ll~~L~~~~~~l~~i~LIIiDEaH~~~~~~~~~~imk~~~~~~ 197 (1590)
...+..+...........+..+ -+...+.. ........++|+||+|.+... ..+.+++. ....
T Consensus 73 ~~~~~~~~~~~~~~~i~~~~ir--------------~l~~~~~~-~~~~~~~kviIide~d~l~~~-a~n~Llk~-lEep 135 (207)
T d1a5ta2 73 HPDYYTLAPEKGKNTLGVDAVR--------------EVTEKLNE-HARLGGAKVVWVTDAALLTDA-AANALLKT-LEEP 135 (207)
T ss_dssp CTTEEEECCCTTCSSBCHHHHH--------------HHHHHTTS-CCTTSSCEEEEESCGGGBCHH-HHHHHHHH-HTSC
T ss_pred CCCCCHHHHHHCCCCCCCCHHH--------------HHHHHHHH-CCCCCCCCEEEECHHHHHHHH-HHHHHHHH-HHHH
T ss_conf 4311012343134533321146--------------77653211-003576404773134420000-14999999-9850
Q ss_pred CCCCCEEEEEC
Q ss_conf 99980999805
Q 000384 198 DNKPKVFGMTA 208 (1590)
Q Consensus 198 ~~~priLgLTA 208 (1590)
....++++.|-
T Consensus 136 ~~~~~fIl~t~ 146 (207)
T d1a5ta2 136 PAETWFFLATR 146 (207)
T ss_dssp CTTEEEEEEES
T ss_pred CCCCEEEEEEC
T ss_conf 11110455306
|
| >d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=96.16 E-value=0.029 Score=29.08 Aligned_cols=79 Identities=19% Similarity=0.216 Sum_probs=60.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHC------CCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHH
Q ss_conf 9988799994889999999724------8989990899839999999999999997707997299999357555999999
Q 000384 38 STNSINFIPRIYQLKVFEVAKR------RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYD 111 (1590)
Q Consensus 38 ~~~~~~~~pR~yQ~e~le~~l~------~n~Ii~~~TGsGKTliaillI~~~l~~~~~~~~~~~vlvLvPtv~Lv~Qq~~ 111 (1590)
.....+|.|.--|-++++.+.. ++..+.+-||||||++..-++.+. ++ .+++|+|+..++.|+++
T Consensus 4 f~~~~~~~p~gDQP~aI~~l~~~l~~g~~~q~l~GltGS~ka~~iA~l~~~~--------~r-p~LVVt~n~~~A~qL~~ 74 (413)
T d1t5la1 4 FQLVAPYEPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFTISNVIAQV--------NK-PTLVIAHNKTLAGQLYS 74 (413)
T ss_dssp CCCCCSSCCCTTHHHHHHHHHHHHHHTCSEEEEEECTTSCHHHHHHHHHHHH--------TC-CEEEECSSHHHHHHHHH
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHH--------CC-CEEEEECCHHHHHHHHH
T ss_conf 2770588999988899999999986599858996778748999999999973--------99-98999489999999999
Q ss_pred HHHHHCCCCEEEEE
Q ss_conf 99861698358986
Q 000384 112 VIRVHTDFEVEEYY 125 (1590)
Q Consensus 112 ~i~~~~~~~v~~~~ 125 (1590)
.++.+++-....+.
T Consensus 75 dL~~~l~~~~v~~f 88 (413)
T d1t5la1 75 ELKEFFPHNAVEYF 88 (413)
T ss_dssp HHHHHCTTSEEEEE
T ss_pred HHHHHCCCCCEEEC
T ss_conf 99987487745432
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.25 E-value=0.062 Score=26.58 Aligned_cols=41 Identities=12% Similarity=0.113 Sum_probs=28.3
Q ss_pred CCCCHHHHHHHHHHHC-----CCEEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 9994889999999724-----8989990899839999999999999
Q 000384 44 FIPRIYQLKVFEVAKR-----RNTIAVLETGAGKTMIAVMLIKDIA 84 (1590)
Q Consensus 44 ~~pR~yQ~e~le~~l~-----~n~Ii~~~TGsGKTliaillI~~~l 84 (1590)
+.-++...+.+..+.. .+.|+++|.|+|||.++-.++.++.
T Consensus 13 iig~~~~~~~L~~~~~~~~~~~~lll~Gp~G~GKTt~~~~la~~l~ 58 (252)
T d1sxje2 13 LSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIF 58 (252)
T ss_dssp CCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHS
T ss_pred CCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 3583999999999997699878599889999988999999997622
|
| >d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=95.09 E-value=0.043 Score=27.77 Aligned_cols=84 Identities=14% Similarity=0.117 Sum_probs=67.0
Q ss_pred CCEEEEEEECCHHHHHHHHHHHHHHC-CCCEEEEECCCCCCCCCHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCCEE
Q ss_conf 97299999357555999999998616-98358986688877302278898307896999859999999972176765421
Q 000384 92 FKKLIIFLAPTVHLVHQQYDVIRVHT-DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVC 170 (1590)
Q Consensus 92 ~~~~vlvLvPtv~Lv~Qq~~~i~~~~-~~~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~Ll~~L~~~~~~l~~i~ 170 (1590)
.+..+.|+||.+.-....++.+.+.+ +++++.++|.++.++.+....+-.-.+.+|+|+|.=+ .--+.+.+.+
T Consensus 30 rGgQvy~V~p~I~~~e~~~~~l~~~~p~~~i~~lHGkm~~~eke~im~~F~~g~~~ILv~TtvI------EvGiDvpnA~ 103 (211)
T d2eyqa5 30 RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTII------ETGIDIPTAN 103 (211)
T ss_dssp TTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTT------GGGSCCTTEE
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEHHH------HHCCCCCCCC
T ss_conf 6995999971752126688888874773379999722688889999999982986268875534------4046899876
Q ss_pred EEEEECCCCCC
Q ss_conf 89984641003
Q 000384 171 FIVIDECHHAT 181 (1590)
Q Consensus 171 LIIiDEaH~~~ 181 (1590)
++|+..|+++.
T Consensus 104 ~iiI~~a~rfG 114 (211)
T d2eyqa5 104 TIIIERADHFG 114 (211)
T ss_dssp EEEETTTTSSC
T ss_pred EEEEECCHHCC
T ss_conf 99871300033
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.37 E-value=0.07 Score=26.17 Aligned_cols=111 Identities=21% Similarity=0.165 Sum_probs=78.2
Q ss_pred CHHHHHHHHHHHHCCCCCCCEEEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 99999999999840999981899998009899999999862999987069999757888798899999999998308982
Q 000384 396 STKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKV 475 (1590)
Q Consensus 396 s~Kv~~L~~lL~~~~~~~~~~~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~l~~~~q~~vl~~Fr~g~~ 475 (1590)
|.|...-+......- ..+.++++.+.+..-+...++.+......-+..+..++|. ++.+++.+++.+.++|++
T Consensus 115 SGKT~Va~~a~~~~~-~~g~q~~~m~Pt~~La~Qh~~~~~~~f~~~~~~v~~l~~~------~~~~~r~~~~~~~~~g~~ 187 (264)
T d1gm5a3 115 SGKTVVAQLAILDNY-EAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGA------TTPSEKEKIKSGLRNGQI 187 (264)
T ss_dssp SSHHHHHHHHHHHHH-HHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSS------SCHHHHHHHHHHHHSSCC
T ss_pred CCCCHHHHHHHHHHH-HCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCCEEECCC------CCHHHHHHHHHHHHCCCC
T ss_conf 566599999999988-5135505874047665789999988620123121110110------136999999999977997
Q ss_pred EEEEECC-CCCCCCCCCCCCEEEECCCCCCHHHHHHHHCCC
Q ss_conf 1999724-322354578863899806999977999972112
Q 000384 476 NLLFATD-VIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRA 515 (1590)
Q Consensus 476 niLVaTs-vleeGIDIp~~~~VI~fD~p~s~~syiQr~GRA 515 (1590)
+++|.|. .+.+.+.+.+..+||.=.-. --+|.||.+-.
T Consensus 188 ~iiIGThsl~~~~~~f~~LglviiDEqH--~fgv~Qr~~l~ 226 (264)
T d1gm5a3 188 DVVIGTHALIQEDVHFKNLGLVIIDEQH--RFGVKQREALM 226 (264)
T ss_dssp CEEEECTTHHHHCCCCSCCCEEEEESCC--CC-----CCCC
T ss_pred CEEEEEHHHHCCCCCCCCCCEEEECCCC--CCCHHHHHHHH
T ss_conf 9999653885489874556225632421--00243479999
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=94.05 E-value=0.11 Score=24.54 Aligned_cols=124 Identities=15% Similarity=0.087 Sum_probs=66.6
Q ss_pred CCCE-EEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEC-CHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHH
Q ss_conf 4898-999089983999999999999999770799729999935-75559999999986169835898668887730227
Q 000384 59 RRNT-IAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAP-TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQ 136 (1590)
Q Consensus 59 ~~n~-Ii~~~TGsGKTliaillI~~~l~~~~~~~~~~~vlvLvP-tv~Lv~Qq~~~i~~~~~~~v~~~~G~~~~d~~~~~ 136 (1590)
++++ +++.|||+|||....-+..++.. . .++..++-+. .+.-+.+|-+.+.+.+++.+....... +.. .
T Consensus 9 ~~~vi~lvGp~GvGKTTTiaKLA~~~~~----~-g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~--~~~--~ 79 (207)
T d1ls1a2 9 DRNLWFLVGLQGSGKTTTAAKLALYYKG----K-GRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGE--SPE--S 79 (207)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHH----T-TCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTC--CHH--H
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHH----C-CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCC--HHH--H
T ss_conf 9868999899999889999999999997----7-99279995443464088889999986288631112442--036--7
Q ss_pred HHHHHCCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCC
Q ss_conf 88983078969998599999999721767654218998464100389908999999973089998099980557
Q 000384 137 CWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASP 210 (1590)
Q Consensus 137 ~w~~~~~~~~VlV~T~q~Ll~~L~~~~~~l~~i~LIIiDEaH~~~~~~~~~~imk~~~~~~~~~priLgLTATP 210 (1590)
.+ .... ......+.++|++|=+=+...+.....-++.+.....+...+|-+.|+-
T Consensus 80 ~~-----------------~~~~--~~~~~~~~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~ 134 (207)
T d1ls1a2 80 IR-----------------RRVE--EKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMT 134 (207)
T ss_dssp HH-----------------HHHH--HHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred HH-----------------HHHH--HHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 88-----------------8898--8876336764033454420000366889999986318736999843455
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=93.01 E-value=0.17 Score=23.32 Aligned_cols=123 Identities=16% Similarity=0.080 Sum_probs=65.7
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECC-HHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHH
Q ss_conf 989990899839999999999999997707997299999357-5559999999986169835898668887730227889
Q 000384 61 NTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPT-VHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQ 139 (1590)
Q Consensus 61 n~Ii~~~TGsGKTliaillI~~~l~~~~~~~~~~~vlvLvPt-v~Lv~Qq~~~i~~~~~~~v~~~~G~~~~d~~~~~~w~ 139 (1590)
-++++.|||+|||....-+..++.. .+++.+++-+.+ +.=+.+|-+.+.+.+++.+.... ...|..
T Consensus 8 vi~lvGptGvGKTTTiaKLA~~~~~-----~g~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~--~~~d~~------ 74 (207)
T d1okkd2 8 VVLVVGVNGVGKTTTIAKLGRYYQN-----LGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGP--EGTDPA------ 74 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHT-----TTCCEEEECCCCSSTTHHHHHHHHHHHHTCCEECCC--TTCCHH------
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-----CCCCEEEEEECCCCCCCHHHHHHCCCCCCCEEEECC--CCCCHH------
T ss_conf 9999899999889999999999997-----799079998136665402667640545682389616--774278------
Q ss_pred HHCCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHC------CCCCCCEEEEECCCC
Q ss_conf 830789699985999999997217676542189984641003899089999999730------899980999805577
Q 000384 140 KEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHK------SDNKPKVFGMTASPV 211 (1590)
Q Consensus 140 ~~~~~~~VlV~T~q~Ll~~L~~~~~~l~~i~LIIiDEaH~~~~~~~~~~imk~~~~~------~~~~priLgLTATP~ 211 (1590)
..+.+.+. .....+.++|++|=+=+...+......++.+... ..+.-.+|-|+|+-.
T Consensus 75 -------------~~~~~~~~--~~~~~~~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~ 137 (207)
T d1okkd2 75 -------------ALAYDAVQ--AMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTG 137 (207)
T ss_dssp -------------HHHHHHHH--HHHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBC
T ss_pred -------------HHHHHHHH--HHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCC
T ss_conf -------------89999899--9998799999717522231127788887777777653256787359999620047
|
| >d1t2sa_ b.34.14.1 (A:) Argonaute 2 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: SH3-like barrel superfamily: PAZ domain family: PAZ domain domain: Argonaute 2 species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=92.65 E-value=0.078 Score=25.81 Aligned_cols=79 Identities=20% Similarity=0.304 Sum_probs=53.0
Q ss_pred CCCCCEEEECC-C-----CCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCC
Q ss_conf 33583999314-9-----92489998617998899999999999823999986540530137998509840357753356
Q 000384 892 NLKDMVVLAIH-T-----GRIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLL 965 (1590)
Q Consensus 892 ~l~~~vV~~~~-~-----~~~Y~v~~i~~d~tp~s~f~~~~~~~~~ty~~Yy~~k~~~~i~~~~QPlL~~~~~~~~~n~l 965 (1590)
.+++.-|...| . +|.|.|.++-..-+-...|+. ++...|-.+||++ |++.+.+|+-|+|.+..-.
T Consensus 36 ~LKGlkV~~th~~~~~~~~R~~~I~glt~~~a~~~~F~~--dg~~itV~~YF~~-~~~~Lk~p~lPcl~vG~~~------ 106 (123)
T d1t2sa_ 36 FLRGINVVYTPPQSFQSAPRVYRVNGLSRAPASSETFEH--DGKKVTIASYFHS-RNYPLKFPQLHCLNVGSSI------ 106 (123)
T ss_dssp HHTTEEEEECCCTTTCCCCEEEEECEEEEEETTTCEEEE--TTEEEEHHHHHHH-TTCCCSCTTSEEEEEECSS------
T ss_pred HHCCCEEEEECCCCCCCCCCEEEECCCCCCCHHCCEECC--CCEEEEHHHHHHH-HCCCCCCCCCCEEEECCCC------
T ss_conf 838978999548887887736998137888632255537--9918889999998-5954348997679967888------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEECC
Q ss_conf 5567999998898888788888723541653405403
Q 000384 966 VNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVD 1002 (1590)
Q Consensus 966 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pe~~~~~~ 1002 (1590)
-..++|.|+|.+.+
T Consensus 107 -----------------------k~~ylPmElc~I~~ 120 (123)
T d1t2sa_ 107 -----------------------KSILLPIELCSIEE 120 (123)
T ss_dssp -----------------------SEEEECGGGEEECT
T ss_pred -----------------------CCCEECHHHEEECC
T ss_conf -----------------------87285550278668
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=92.35 E-value=0.2 Score=22.70 Aligned_cols=115 Identities=19% Similarity=0.177 Sum_probs=53.2
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHH
Q ss_conf 98999089983999999999999999770799729999935755599999999861698358986688877302278898
Q 000384 61 NTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQK 140 (1590)
Q Consensus 61 n~Ii~~~TGsGKTliaillI~~~l~~~~~~~~~~~vlvLvPtv~Lv~Qq~~~i~~~~~~~v~~~~G~~~~d~~~~~~w~~ 140 (1590)
..|+++|.|+|||..|.+++..+.... .... .|... ......+.....+.+..+......
T Consensus 36 ~~Ll~Gp~G~GKtt~a~~~~~~l~~~~---~~~~-----~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~---------- 95 (239)
T d1njfa_ 36 AYLFSGTRGVGKTSIARLLAKGLNCET---GITA-----TPCGV--CDNCREIEQGRFVDLIEIDAASRT---------- 95 (239)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHCTT---CSCS-----SCCSC--SHHHHHHHHTCCTTEEEEETTCSS----------
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCC---CCCC-----CCCCC--CHHHHHHHCCCCCEEEEECCHHCC----------
T ss_conf 598888998758999999999846855---6666-----75554--247999974798707996112007----------
Q ss_pred HCCCCCEEEECHHHHHHHHHHCCC--CCCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf 307896999859999999972176--7654218998464100389908999999973089998099980
Q 000384 141 EINKNDVLVMTPQILLDALRKAFL--SLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMT 207 (1590)
Q Consensus 141 ~~~~~~VlV~T~q~Ll~~L~~~~~--~l~~i~LIIiDEaH~~~~~~~~~~imk~~~~~~~~~priLgLT 207 (1590)
..+.+.+.+..... ......++|+||+|.+..+ ..+.+.+. ........++++.|
T Consensus 96 ----------~i~~ir~~~~~~~~~~~~~~~kviiIde~d~l~~~-~q~~Llk~-lE~~~~~~~~il~t 152 (239)
T d1njfa_ 96 ----------KVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRH-SFNALLKT-LEEPPEHVKFLLAT 152 (239)
T ss_dssp ----------SHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHH-HHHHHHHH-HHSCCTTEEEEEEE
T ss_pred ----------CHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHH-HHHHHHHH-HHCCCCCEEEEEEC
T ss_conf ----------89999999999974652599879999781108999-99999999-85689886999973
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.56 E-value=0.24 Score=22.07 Aligned_cols=39 Identities=15% Similarity=0.140 Sum_probs=28.3
Q ss_pred CHHHHHHHHHHHC----CCEEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 4889999999724----89899908998399999999999999
Q 000384 47 RIYQLKVFEVAKR----RNTIAVLETGAGKTMIAVMLIKDIAQ 85 (1590)
Q Consensus 47 R~yQ~e~le~~l~----~n~Ii~~~TGsGKTliaillI~~~l~ 85 (1590)
.+-..+.+..+++ .+.|+++|.|+|||.+|-.++.++..
T Consensus 20 ~~~~~~~L~~~~~~~~~~~~ll~Gp~G~GKTt~a~~la~~l~~ 62 (224)
T d1sxjb2 20 NKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLG 62 (224)
T ss_dssp CTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHG
T ss_pred CHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHC
T ss_conf 7999999999998699874999889998705469999999725
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=91.40 E-value=0.25 Score=21.96 Aligned_cols=98 Identities=11% Similarity=0.104 Sum_probs=75.7
Q ss_pred CHHHHHHHHHHHHCCCCCCCEEEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 99999999999840999981899998009899999999862999987069999757888798899999999998308982
Q 000384 396 STKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKV 475 (1590)
Q Consensus 396 s~Kv~~L~~lL~~~~~~~~~~~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~l~~~~q~~vl~~Fr~g~~ 475 (1590)
|.|...-+..+...- ..+.++++.++...-+...++.++.....-+..+..++|. ++.+++.++.+...+|+.
T Consensus 87 sGKT~V~~~a~~~~~-~~g~qv~~l~Pt~~La~Q~~~~~~~~~~~~~~~v~~l~~~------~~~~~~~~~~~~~~~g~~ 159 (233)
T d2eyqa3 87 FGKTEVAMRAAFLAV-DNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRF------RSAKEQTQILAEVAEGKI 159 (233)
T ss_dssp TTTHHHHHHHHHHHH-TTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTT------SCHHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHH-HCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCEEEECCCC------CCCHHHHHHHHHHHCCCC
T ss_conf 772899999999999-7689569974688767999999999872479779763576------531269999999967997
Q ss_pred EEEEECCCC-CCCCCCCCCCEEEECC
Q ss_conf 199972432-2354578863899806
Q 000384 476 NLLFATDVI-EEGMHVPNCSYVIRFD 500 (1590)
Q Consensus 476 niLVaTsvl-eeGIDIp~~~~VI~fD 500 (1590)
+++|.|..+ ...+.+++..+||.=.
T Consensus 160 ~iviGths~l~~~~~f~~LgLiIiDE 185 (233)
T d2eyqa3 160 DILIGTHKLLQSDVKFKDLGLLIVDE 185 (233)
T ss_dssp SEEEECTHHHHSCCCCSSEEEEEEES
T ss_pred CEEEEEHHHHCCCCCCCCCCCEEEEC
T ss_conf 88974202330677655546302223
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=90.92 E-value=0.28 Score=21.63 Aligned_cols=100 Identities=9% Similarity=0.099 Sum_probs=53.9
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHH
Q ss_conf 98999089983999999999999999770799729999935755599999999861698358986688877302278898
Q 000384 61 NTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQK 140 (1590)
Q Consensus 61 n~Ii~~~TGsGKTliaillI~~~l~~~~~~~~~~~vlvLvPtv~Lv~Qq~~~i~~~~~~~v~~~~G~~~~d~~~~~~w~~ 140 (1590)
.+++++++|+|||+.+..+..+... .+..++++ +...+..+..+.+...
T Consensus 38 ~l~l~G~~G~GKTHLl~A~~~~~~~------~~~~~~~~-~~~~~~~~~~~~~~~~------------------------ 86 (213)
T d1l8qa2 38 PIFIYGSVGTGKTHLLQAAGNEAKK------RGYRVIYS-SADDFAQAMVEHLKKG------------------------ 86 (213)
T ss_dssp SEEEECSSSSSHHHHHHHHHHHHHH------TTCCEEEE-EHHHHHHHHHHHHHHT------------------------
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCC------CCCCEEEE-CHHHHHHHHHHHHHCC------------------------
T ss_conf 5799888998399999999987446------76504884-4378799999998716------------------------
Q ss_pred HCCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHCC-CCCCCEEEEEC
Q ss_conf 307896999859999999972176765421899846410038990899999997308-99980999805
Q 000384 141 EINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS-DNKPKVFGMTA 208 (1590)
Q Consensus 141 ~~~~~~VlV~T~q~Ll~~L~~~~~~l~~i~LIIiDEaH~~~~~~~~~~imk~~~~~~-~~~priLgLTA 208 (1590)
..+-+.+. +...++|++|+.|...++..+...+-..+... ....+++..+.
T Consensus 87 ----------~~~~~~~~-------~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~ 138 (213)
T d1l8qa2 87 ----------TINEFRNM-------YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASD 138 (213)
T ss_dssp ----------CHHHHHHH-------HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred ----------CHHHHHHH-------HHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf ----------62667898-------76213010112655058657788999999987631663899548
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=89.59 E-value=0.14 Score=23.95 Aligned_cols=24 Identities=42% Similarity=0.416 Sum_probs=20.6
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHH
Q ss_conf 489899908998399999999999
Q 000384 59 RRNTIAVLETGAGKTMIAVMLIKD 82 (1590)
Q Consensus 59 ~~n~Ii~~~TGsGKTliaillI~~ 82 (1590)
+.|+++..|||+|||++|--+.+.
T Consensus 49 ksNILliGPTGvGKTlLAr~LAk~ 72 (443)
T d1g41a_ 49 PKNILMIGPTGVGKTEIARRLAKL 72 (443)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHH
T ss_conf 564799899998899999999987
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=89.52 E-value=0.35 Score=20.81 Aligned_cols=56 Identities=21% Similarity=0.130 Sum_probs=38.4
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECC-HHHHHHHHHHHHHHCCCCEE
Q ss_conf 89990899839999999999999997707997299999357-55599999999861698358
Q 000384 62 TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPT-VHLVHQQYDVIRVHTDFEVE 122 (1590)
Q Consensus 62 ~Ii~~~TGsGKTliaillI~~~l~~~~~~~~~~~vlvLvPt-v~Lv~Qq~~~i~~~~~~~v~ 122 (1590)
++++.|||+|||....-+..++.. . +++..++-+.| +.=+.+|-+.+.+.+++.+.
T Consensus 14 i~lvGptGvGKTTTiAKLAa~~~~----~-~~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~ 70 (213)
T d1vmaa2 14 IMVVGVNGTGKTTSCGKLAKMFVD----E-GKSVVLAAADTFRAAAIEQLKIWGERVGATVI 70 (213)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHH----T-TCCEEEEEECTTCHHHHHHHHHHHHHHTCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH----C-CCCEEEEEECCCCCCHHHHHHHHHHHCCCCCC
T ss_conf 999899999889999999999997----7-99069996013342046788877643276410
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=89.34 E-value=0.36 Score=20.72 Aligned_cols=112 Identities=11% Similarity=0.081 Sum_probs=61.3
Q ss_pred HHHHHHHHHC----CCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHH--HHHHHHHHHHHCCCCEEE
Q ss_conf 9999999724----8989990899839999999999999997707997299999357555--999999998616983589
Q 000384 50 QLKVFEVAKR----RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL--VHQQYDVIRVHTDFEVEE 123 (1590)
Q Consensus 50 Q~e~le~~l~----~n~Ii~~~TGsGKTliaillI~~~l~~~~~~~~~~~vlvLvPtv~L--v~Qq~~~i~~~~~~~v~~ 123 (1590)
|.+.++.+.+ .+.|++++.|+|||-+|..+...... ....+.-++++.|...- ++|..+
T Consensus 2 ~~~~l~~~i~~~~~~~~l~~G~~g~gk~~~a~~l~~~i~~---~~~~h~D~~~i~~~~~~I~Id~IR~------------ 66 (198)
T d2gnoa2 2 QLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEK---FPPKASDVLEIDPEGENIGIDDIRT------------ 66 (198)
T ss_dssp HHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHT---SCCCTTTEEEECCSSSCBCHHHHHH------------
T ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHC---CCCCCCCEEEEECCCCCCCHHHHHH------------
T ss_conf 7899999996699855998898998889999999999843---4567998899807767899899999------------
Q ss_pred EECCCCCCCCCHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCE
Q ss_conf 86688877302278898307896999859999999972176765421899846410038990899999997308999809
Q 000384 124 YYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKV 203 (1590)
Q Consensus 124 ~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~Ll~~L~~~~~~l~~i~LIIiDEaH~~~~~~~~~~imk~~~~~~~~~pri 203 (1590)
+.+.+... .......++|+||||++... ..+.+++.. ...+...++
T Consensus 67 -------------------------------i~~~~~~~-~~~~~~KviIId~ad~l~~~-aqNaLLK~L-EEPp~~t~f 112 (198)
T d2gnoa2 67 -------------------------------IKDFLNYS-PELYTRKYVIVHDCERMTQQ-AANAFLKAL-EEPPEYAVI 112 (198)
T ss_dssp -------------------------------HHHHHTSC-CSSSSSEEEEETTGGGBCHH-HHHHTHHHH-HSCCTTEEE
T ss_pred -------------------------------HHHHHHHC-CCCCCCEEEEEECCCCCCHH-HHHHHHHHH-HCCCCCCEE
T ss_conf -------------------------------99999617-54589879999473103666-664788877-378988522
Q ss_pred EEEECCC
Q ss_conf 9980557
Q 000384 204 FGMTASP 210 (1590)
Q Consensus 204 LgLTATP 210 (1590)
+..|..|
T Consensus 113 iLit~~~ 119 (198)
T d2gnoa2 113 VLNTRRW 119 (198)
T ss_dssp EEEESCG
T ss_pred EECCCCH
T ss_conf 2206995
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=89.13 E-value=0.38 Score=20.61 Aligned_cols=122 Identities=16% Similarity=0.175 Sum_probs=63.1
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECC-HHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHH
Q ss_conf 89990899839999999999999997707997299999357-55599999999861698358986688877302278898
Q 000384 62 TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPT-VHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQK 140 (1590)
Q Consensus 62 ~Ii~~~TGsGKTliaillI~~~l~~~~~~~~~~~vlvLvPt-v~Lv~Qq~~~i~~~~~~~v~~~~G~~~~d~~~~~~w~~ 140 (1590)
+.++.|||+|||....-+..++.. .+++..++-+.| +.=+.+|-+.+.+.+++.+..... ..+.
T Consensus 12 i~lvGptGvGKTTTiAKLA~~~~~-----~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~--~~d~-------- 76 (211)
T d2qy9a2 12 ILMVGVNGVGKTTTIGKLARQFEQ-----QGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHT--GADS-------- 76 (211)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHT-----TTCCEEEECCCTTCHHHHHHHHHHHHHTTCCEECCST--TCCH--------
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-----CCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCC--CCCH--------
T ss_conf 999899999989999999999997-----7994799823213666120455543433886211356--8779--------
Q ss_pred HCCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCC------CCCCEEEEECCCC
Q ss_conf 3078969998599999999721767654218998464100389908999999973089------9980999805577
Q 000384 141 EINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSD------NKPKVFGMTASPV 211 (1590)
Q Consensus 141 ~~~~~~VlV~T~q~Ll~~L~~~~~~l~~i~LIIiDEaH~~~~~~~~~~imk~~~~~~~------~~priLgLTATP~ 211 (1590)
..++.+.+.. ....+.++|++|=+=+...+.....-++.+....+ +.-.+|.|+|+-.
T Consensus 77 -----------~~~l~~~~~~--a~~~~~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~ 140 (211)
T d2qy9a2 77 -----------ASVIFDAIQA--AKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG 140 (211)
T ss_dssp -----------HHHHHHHHHH--HHHTTCSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGT
T ss_pred -----------HHHHHHHHHH--HHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHCCCC
T ss_conf -----------9999999999--987699889965688763207789999999999853046686001220012357
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.46 E-value=0.47 Score=19.86 Aligned_cols=41 Identities=17% Similarity=0.109 Sum_probs=29.1
Q ss_pred CCCCHHHHHHHHHHHC----CCEEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 9994889999999724----8989990899839999999999999
Q 000384 44 FIPRIYQLKVFEVAKR----RNTIAVLETGAGKTMIAVMLIKDIA 84 (1590)
Q Consensus 44 ~~pR~yQ~e~le~~l~----~n~Ii~~~TGsGKTliaillI~~~l 84 (1590)
+.-.+-..+.+..+.+ .+.|+++|+|+|||..+.+++.++.
T Consensus 16 ivg~~~~~~~L~~~i~~~~~~~lLl~Gp~G~GKttl~~~la~~l~ 60 (227)
T d1sxjc2 16 VYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY 60 (227)
T ss_dssp CCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 359699999999999769998599988998775589999999851
|
| >d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Probab=87.37 E-value=0.48 Score=19.83 Aligned_cols=71 Identities=24% Similarity=0.200 Sum_probs=53.0
Q ss_pred CCCHHHHHHHHHHHC-----CC-EEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHCC
Q ss_conf 994889999999724-----89-899908998399999999999999977079972999993575559999999986169
Q 000384 45 IPRIYQLKVFEVAKR-----RN-TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTD 118 (1590)
Q Consensus 45 ~pR~yQ~e~le~~l~-----~n-~Ii~~~TGsGKTliaillI~~~l~~~~~~~~~~~vlvLvPtv~Lv~Qq~~~i~~~~~ 118 (1590)
+|+.-|-++++.+.+ +. ..+.+-+||+|+++..-++... ++. ++|++|+...+.|+++.++.+++
T Consensus 8 ~p~~dqp~aI~~l~~~L~~g~~~~~L~GlsgS~ka~~~A~l~~~~--------~rp-~LvVt~~~~~A~~l~~dL~~~l~ 78 (408)
T d1c4oa1 8 SPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAKVIEAL--------GRP-ALVLAPNKILAAQLAAEFRELFP 78 (408)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHH--------TCC-EEEEESSHHHHHHHHHHHHHHCT
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHH--------CCC-EEEEECCHHHHHHHHHHHHHHCC
T ss_conf 999877999999999986699737985688878999999999985--------999-99991899999999999998647
Q ss_pred CCEEEE
Q ss_conf 835898
Q 000384 119 FEVEEY 124 (1590)
Q Consensus 119 ~~v~~~ 124 (1590)
-....+
T Consensus 79 ~~~v~~ 84 (408)
T d1c4oa1 79 ENAVEY 84 (408)
T ss_dssp TSEEEE
T ss_pred CCCEEE
T ss_conf 664556
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.16 E-value=0.49 Score=19.74 Aligned_cols=39 Identities=18% Similarity=0.209 Sum_probs=29.1
Q ss_pred CHHHHHHHHHHHC----CCEEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 4889999999724----89899908998399999999999999
Q 000384 47 RIYQLKVFEVAKR----RNTIAVLETGAGKTMIAVMLIKDIAQ 85 (1590)
Q Consensus 47 R~yQ~e~le~~l~----~n~Ii~~~TGsGKTliaillI~~~l~ 85 (1590)
++...+.+..+++ .+.++++|+|+|||..+-.++.++..
T Consensus 17 ~~~~~~~l~~~i~~~~~~~lll~Gp~G~GKTtl~~~i~~~l~~ 59 (237)
T d1sxjd2 17 QDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYG 59 (237)
T ss_dssp CCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 3999999999998699885999899999849999999999709
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=86.98 E-value=0.4 Score=20.39 Aligned_cols=25 Identities=40% Similarity=0.389 Sum_probs=20.7
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHH
Q ss_conf 4898999089983999999999999
Q 000384 59 RRNTIAVLETGAGKTMIAVMLIKDI 83 (1590)
Q Consensus 59 ~~n~Ii~~~TGsGKTliaillI~~~ 83 (1590)
.++++++.|||+|||.+|-.+...+
T Consensus 49 ~~~iLl~GPpG~GKT~lAkalA~~~ 73 (309)
T d1ofha_ 49 PKNILMIGPTGVGKTEIARRLAKLA 73 (309)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 8669998999988889999986213
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| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=86.47 E-value=0.53 Score=19.48 Aligned_cols=21 Identities=14% Similarity=0.279 Sum_probs=8.8
Q ss_pred CCEEEEEECCCEEEEEEECCCC
Q ss_conf 5339997169708999974699
Q 000384 592 KPIFKYKSAEEAYECELTLPSN 613 (1590)
Q Consensus 592 ~p~~~~~~~~~~~~~~v~LP~~ 613 (1590)
.|...-.. .++.++.+.+|..
T Consensus 96 ~Pil~a~L-p~G~Rv~~v~~p~ 116 (323)
T d1g6oa_ 96 NPILSSNL-ANGERVQIVLSPV 116 (323)
T ss_dssp CCEEEEEC-TTSCEEEEECTTT
T ss_pred CCEEEEEE-CCCEEEEEECCCC
T ss_conf 95366772-6853899824676
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=82.64 E-value=0.76 Score=18.29 Aligned_cols=72 Identities=13% Similarity=0.046 Sum_probs=41.8
Q ss_pred CCCCCCCHHHHHHHHHHHC----------CCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHH
Q ss_conf 8799994889999999724----------898999089983999999999999999770799729999935755599999
Q 000384 41 SINFIPRIYQLKVFEVAKR----------RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQY 110 (1590)
Q Consensus 41 ~~~~~pR~yQ~e~le~~l~----------~n~Ii~~~TGsGKTliaillI~~~l~~~~~~~~~~~vlvLvPtv~Lv~Qq~ 110 (1590)
+..+.=|+.|.+.+..++. .++++.+|+|+|||.++-.+...+. ....-..+.+-+.......+-.
T Consensus 15 p~~l~~Re~ei~~l~~~l~~~l~~~~~~~~~lll~GppGtGKT~l~~~l~~~l~----~~~~~~~~~~~~~~~~~~~~~~ 90 (276)
T d1fnna2 15 PKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYK----DKTTARFVYINGFIYRNFTAII 90 (276)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHT----TSCCCEEEEEETTTCCSHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHH----CCCCCCEEEECCHHHHHHHHHH
T ss_conf 887887799999999999999857898888168889899989999999999975----4468857873230011246665
Q ss_pred HHHHHH
Q ss_conf 999861
Q 000384 111 DVIRVH 116 (1590)
Q Consensus 111 ~~i~~~ 116 (1590)
..+...
T Consensus 91 ~~~~~~ 96 (276)
T d1fnna2 91 GEIARS 96 (276)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 456776
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=81.33 E-value=0.84 Score=17.96 Aligned_cols=42 Identities=17% Similarity=0.219 Sum_probs=29.1
Q ss_pred CCCCCHHHHHHHHHHHC----CCEEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 99994889999999724----8989990899839999999999999
Q 000384 43 NFIPRIYQLKVFEVAKR----RNTIAVLETGAGKTMIAVMLIKDIA 84 (1590)
Q Consensus 43 ~~~pR~yQ~e~le~~l~----~n~Ii~~~TGsGKTliaillI~~~l 84 (1590)
++.-.+...+.+..+++ .+.|+++|.|+|||.++-.++.++.
T Consensus 25 diig~~~~~~~l~~~i~~~~~~~lll~Gp~G~GKTtla~~iak~l~ 70 (231)
T d1iqpa2 25 DIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELF 70 (231)
T ss_dssp TCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9139399999999999859997699978999748799999999987
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=80.58 E-value=0.89 Score=17.78 Aligned_cols=44 Identities=18% Similarity=0.225 Sum_probs=31.9
Q ss_pred HHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHH
Q ss_conf 72489899908998399999999999999977079972999993575559
Q 000384 57 AKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106 (1590)
Q Consensus 57 ~l~~n~Ii~~~TGsGKTliaillI~~~l~~~~~~~~~~~vlvLvPtv~Lv 106 (1590)
...++++|.++||+|||.....+|.+.+. .+..++++=|.-.+.
T Consensus 48 ~~~~H~~I~G~tGsGKT~~l~~li~~~~~------~g~~~iiiD~kge~~ 91 (433)
T d1e9ra_ 48 AEPRHLLVNGATGTGKSVLLRELAYTGLL------RGDRMVIVDPNGDML 91 (433)
T ss_dssp GGGGCEEEEECTTSSHHHHHHHHHHHHHH------TTCEEEEEEETTHHH
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHH------CCCCEEEEECCHHHH
T ss_conf 35265899907999689999999999984------799889996871699
|