Citrus Sinensis ID: 000387

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------1370------1380------1390------1400------1410------1420------1430------1440------1450------1460------1470------1480------1490------1500------1510------1520------1530------1540------1550------1560------1570------1580------159
MSKSNPRPNLSQNPLAEYFTNSLMAQNQLIDSLTSHISLYHSHSLSSNPNPSSNPRSSILKWFASLTVHQRQAHLTIVDSKFAQLLIQMLGKLRANGHGFFIILPDLPSRDPPYLPGLCYKKSRGLLSRVAESNESGRWVFESTRLFSSREGEKIEEWSCPVNCLDTFTVSVEFVENVDRFIDIMDEISNGGFLRGEESELAGDWVEFDWLKAKGYYSIEAFIVNRLEVGLRLAWLNCNNGKKRGVKLKEKLNAAGMAANVYWRKKGCVDWWMNLDDAMRRKVLTVILGKAAKSLTHEVLKEASNALEDGMWLFNAGMKQSSRFYHSKSLQRTISTLSVDVECGLAISPASLSGIPASLATVFSGLFVLQDITTMVLSSQHNEYDIEKIFFSSLRFVSTTTDCLLRKLRGLLMVVSLDCTKLELFGEGNFKSSPNKSKEKPSTIGRRKKCRACSTKRQNPLPKSALDELSLDKLPKDPEGALTDTEKVDLMGSDKVPGISNGKDINRETSTSEMEMVVCHQEHARALVAGKGRTNARKTKTVKNKNKNCTYNNPVPVKDPKVSVLETSSSISLQDEVEKYDKLSAQNVSVDNSTCSNVLASNQSSCTSASVPAREGIATQSTQEDCVVNSVNSECRRFSNGRIDNQTQHFLQETTDSKVECNIISPDMPARDLDNAFGNSISGINFQNSFHESETGAISVLPDKGIEALEIKKESAVTQDQRNESFFGTALKSSLECPSYEWPTIAPVYFPSISSHLLPATDRLHLDVGHNWHNHVRQPFVPTLHQARNHPFDGGCNQILSQPLPMSLDWPPMVQNVSGIAPSVTCNYDSGFISSRQSGFQQNFATKGMQFNAKTSDDEGKCSGDFMDLPEPTTTQEQGDECDSHWLSEEELEVHTVSGIDYNQYFGGGVMYWNTSDHPGTGFSRPPSLSSDDSSWAWHEADIKRAVDDMVAFSSSYSTNGLTSPTAASFCSPFDPLGPGHQAFSYVVPGNEVPGKVLHSSSTTTDVATEEEISGSFASLSGDVDSKALDTLPCPILRPIIIPNLSRERSRSDFKRSHEHKSPCVPPSRREQPRIKRPPSPVVLCVPRAPRPPPPSPVSDSRKTRGFPTVRSGSSSPRHWGVRGWYHEGTTSEEGCVRMDGSEVVWPSWRNKNLSAHPMIQPLSGALLQDHLIAISQLARDQEHPDVAFPLQPLEVQNCPTRKASLSLMHSLLHEEIDSFCKQVAAENTARKPYINWAVKRVTRSLQVLWPRSRTNIFGSNATGLSLPSSDVDLVVCLPPVRNLEPIKEAGILEGRNGIKETCLQHAARYLANQEWVKSDSLKTVENTAIPIIMLVVEVPHDLIASAASSVQSPKEDAAHTTLKHDNHVHSDMVALDDSASPKCSHTSSDNIKAATSVRLDISFKSPSHTGLQTTDLVKELTEQFPASTPLALVLKQFLADRSLDQSYSGGLSSYCLMLLITRFLQHEHHLGRPINQNYGRLLMDFLYFFGNVFDPRQMRISVQGSGVYIKRERGYSIDPIHIDDPRFPTNNVGRNCFRIHQCIKAFSDAYSILESELTSLTPADDQCSRPPYRLLPKIIPSISLFIS
cccccccccccccccHHHHHHcHHHHHHHHHHHHHccHHccccccccccccccccHHHHHHHHHcccHHHHHcccccccHHHHHHHHHHHHHHHHccccEEEEccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHcccccHHHccccHHHHHHHHHHHHcccccHHHHHHHHHHHcccccccEEEcccccccccccccccccEEEEcccccccccccccccccccccHHHHHHcccccHHHHHHHHHHcccccccccccEEEEcccccccHHHHHHHHHHcccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccEEccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccEEEccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccEEEEccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHcHHHHHHHHHHHHHHHHcccccEEEEEccccccccccccccccEEEcccccccccHHHcccccccccHHHHHHHHHHHHHHccccccccccEEEccccccEEEEEEccccccccccccccccccHHHHHHccccccccccccEEccccccccccccccccccccccEEEEEEEccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHccccccccEEEEEEccccEEEcccccccccEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccc
ccccccccccccccHHHcccccHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHcccHHHHHHHHHHccHHHHHHHHHHHHHHHHccccEEEEEcccccccccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHcccccHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEcccccccEEccccccccEEEccccccHHcccccccccccccHHHHHHHHcHHHHHHHHHHHcccccccccHcEEEEcccccHHHHHHHHHHHHHccEEEEEHHHcEEEHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccEEEccccccccccccccccccccccccccccccccccccccccEccccccEEccccccHccccccccccccccccEEEEEccccccccccccccccccccEcccccccccccccccccccccEccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccEEEEEccccEEEEEcccccEEEEcccccccccccccccccccccccccccccccHcccEcccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccEcccccccccccccccccccccccEEEcccccccEEEccEHHHcccccEEEEccccccccccccccccccccccHHHHHccHHHHHHHHcccccccccccccccccccccccccccccccccEEEEEEcccccccEccccccccccccccccEEEcccccccEEEEccccccccccccEEEccccccccHHHHcccccccccccccccccccccccccccEEEEccccccccccccccHcHHcccccEEEcccccccccccccEccccccccccEEEEccccEEccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccEEEEEEcccccccccccccEEEEEccccccccccccccccccccHHHHHHHHHHHcccccccccccccEEEEccccccEEEEEEccccccEEEccccccccHHHHHHHHccccccccEEEEEEccccccEEEEEEcccccccEEEEEEEEEccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHcccccHccEEEEEccccEEEEccccccccEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHccHccccccccccHHHHHHHccHHHEEEcc
msksnprpnlsqnplaeyfTNSLMAQNQLIDSLTSHISlyhshslssnpnpssnprssILKWFASLTVHQRQAHLTIVDSKFAQLLIQMLGKLranghgffiilpdlpsrdppylpglcykksrgllSRVAESNESGRWVFESTRlfssregekieewscpvncldtfTVSVEFVENVDRFIDIMDEisnggflrgeeselagdwveFDWLKAKGYYSIEAFIVNRLEVGLRLAWLncnngkkrGVKLKEKLNAAGMAANVYWRKKGCVDWWMNLDDAMRRKVLTVILGKAAKSLTHEVLKEASNALEDGMWLFNAgmkqssrfyhskslqRTISTLSVDVEcglaispaslsgipaSLATVFSGLFVLQDITTMVLSsqhneydieKIFFSSLRFVSTTTDCLLRKLRGLLMVVSLDctklelfgegnfksspnkskekpstigrrkkcracstkrqnplpksaldelsldklpkdpegaltdtekvdlmgsdkvpgisngkdinretstsEMEMVVCHQEHARALVAgkgrtnarktktvknknknctynnpvpvkdpkvsvletsssislqdevekYDKLSAqnvsvdnstcsnvlasnqssctsasvparegiatqstqedcvvnsvnsecrrfsngridnqtqhflqettdskvecniispdmpardldnafgnsisginfqnsfhesetgaisvlpdkgiEALEIKKesavtqdqrneSFFGTALKsslecpsyewptiapvyfpsisshllpatdrlhldvghnwhnhvrqpfvptlhqarnhpfdggcnqilsqplpmsldwppmvqnvsgiapsvtcnydsgfissrqsgfqqnfatkgmqfnaktsddegkcsgdfmdlpeptttqeqgdecdshwlseeelevhtvsgidynqyfgggvmywntsdhpgtgfsrppslssddsswawHEADIKRAVDDMVAFSssystngltsptaasfcspfdplgpghqafsyvvpgnevpgkvlhssstttdvateeeisgsfaslsgdvdskaldtlpcpilrpiiipnlsrersrsdfkrshehkspcvppsrreqprikrppspvvlcvpraprppppspvsdsrktrgfptvrsgsssprhwgvrgwyhegttseegcvrmdgsevvwpswrnknlsahpmiqplsGALLQDHLIAISQLardqehpdvafplqplevqncptrkASLSLMHSLLHEEIDSFCKQVAAEntarkpyiNWAVKRVTRSLQvlwprsrtnifgsnatglslpssdvdlvvclppvrnlepikeagilegrngiKETCLQHAARYLANQewvksdslktventaIPIIMLVVEVPHDLIASAassvqspkedaahttlkhdnhvhsdmvalddsaspkcshtssdnikaatsvrldisfkspshtglqTTDLVKELteqfpastpLALVLKQFLAdrsldqsysgglSSYCLMLLITRFLQhehhlgrpinqnYGRLLMDFLYFFgnvfdprqmrisvqgsgvyikrergysidpihiddprfptnnvgrncfRIHQCIKAFSDAYSILESeltsltpaddqcsrppyrllpkiipsislfis
msksnprpnlsqnPLAEYFTNSLMAQNQLIDSLTSHISLYHSHSLSSNPNPSSNPRSSILKWFASLTVHQRQAHLTIVDSKFAQLLIQMLGKLRANGHGFFIILPDLPSRDPPYLPGLCYKKSRGLLSRVaesnesgrwvfesTRLFssregekieewscpvnCLDTFTVSVEFVENVDRFIDIMDEISNGGFLRGEESELAGDWVEFDWLKAKGYYSIEAFIVNRLEVGLRLAWLNCNNGKKRGVKLKEKLNAAGMAANVYWRKKGCVDWWMNLDDAMRRKVLTVILGKAAKSLTHEVLKEASNALEDGMWLFNAGMKQSSRFYHSKSLQRTISTLSVDVECGLAISPASLSGIPASLATVFSGLFVLQDITTMVLSSQHNEYDIEKIFFSSLRFVSTTTDCLLRKLRGLLMVVSLDCTKLElfgegnfksspnkskekpstigrrkkcracstkrqnplpksaldelsldklpkdpegaltdtekvdlmgsdkvpgisngkdiNRETSTSEMEMVVCHQEHARalvagkgrtnarktktvknknknctynnpvpvkdpkvSVLETSSsislqdevekYDKLSAQNVSVDNSTCSNVLASNQSSCTSASVPAREgiatqstqedcvvnSVNSECRRfsngridnqtqhflqettdskVECNIISPDMPARDLDNAFGNSISGINFQNSFHESETGAISVLPDKGIEALEIKKesavtqdqrneSFFGTALKSSLECPSYEWPTIAPVYFPSISSHLLPATDRLHLDVGHNWHNHVRQPFVPTLHQARNHPFDGGCNQILSQPLPMSLDWPPMVQNVSGIAPSVTCNYDSGFISSRQSGFQQNFATKGMQFNAKTSDDEGKCSGDFMDLPEPTTTQEQGDECDSHWLSEEELEVHTVSGIDYNQYFGGGVMYWNTSDHPGTGFSRPPSLSSDDSSWAWHEADIKRAVDDMVAFSSSYSTNGLTSPTAASFCSPFDPLGPGHQAFSYVVPGNEVPGKVLHSSSTTTDVATEEEISGsfaslsgdvdskaldtlpcpilrpiiipnlsrersrsdfkrshehkspcvppsrreqprikrppspvvlcvpraprppppspvsdsrktrgfptvrsgsssprhwgvrgwyhegttseegcvRMDGSEVVWPSWRNKNLSAHPMIQPLSGALLQDHLIAISQLARDQEHPDVAFPLQPLEVQNCPTRKASLSLMHSLLHEEIDSFCKQVAAENTarkpyinwavKRVTRSLQVLWPRSRTNIFGsnatglslpssdVDLVVCLPPVRNLEPIKEAGILEGRNGIKETCLQHAARYLANqewvksdslktVENTAIPIIMLVVEVPHDLIASAASSVQSPKEDAAHTTLKHDNHVHSDMVALDDSASPKCSHTSSDNIKAATSVRLDISFKSPSHTGLQTTDLVKELTEQFPASTPLALVLKQFLADRSLDQSYSGGLSSYCLMLLITRFLQHEHHLGRPINQNYGRLLMDFLYFFGNVFDPRQMRISVQGSGVYIKRERGYSIDPIHIDDPRFPTNNVGRNCFRIHQCIKAFSDAYSILESELTsltpaddqcsrppyrllpkiipsislfis
MSKSNPRPNLSQNPLAEYFTNSLMAQNQLIDsltshislyhshslssnpnpssnprssILKWFASLTVHQRQAHLTIVDSKFAQLLIQMLGKLRANGHGFFIILPDLPSRDPPYLPGLCYKKSRGLLSRVAESNESGRWVFESTRLFSSREGEKIEEWSCPVNCLDTFTVSVEFVENVDRFIDIMDEISNGGFLRGEESELAGDWVEFDWLKAKGYYSIEAFIVNRLEVGLRLAWLNCNNGKKRGVKLKEKLNAAGMAANVYWRKKGCVDWWMNLDDAMRRKVLTVILGKAAKSLTHEVLKEASNALEDGMWLFNAGMKQSSRFYHSKSLQRTISTLSVDVECGLAISPASLSGIPASLATVFSGLFVLQDITTMVLSSQHNEYDIEKIFFSSLRFVSTTTDCLLRKLRGLLMVVSLDCTKLELFGEGNFksspnkskekpsTIGRRKKCRACSTKRQNPLPKSALDELSLDKLPKDPEGALTDTEKVDLMGSDKVPGISNGKDINRETSTSEMEMVVCHQEHARALVAGKGRtnarktktvknknknctynnPVPVKDPKVSVLETSSSISLQDEVEKYDKLSAQNVSVDNSTCSNVLASNQSSCTSASVPAREGIATQSTQEDCVVNSVNSECRRFSNGRIDNQTQHFLQETTDSKVECNIISPDMPARDLDNAFGNSISGINFQNSFHESETGAISVLPDKGIEALEIKKESAVTQDQRNESFFGTALKSSLECPSYEWPTIAPVYFPSISSHLLPATDRLHLDVGHNWHNHVRQPFVPTLHQARNHPFDGGCNQILSQPLPMSLDWPPMVQNVSGIAPSVTCNYDSGFISSRQSGFQQNFATKGMQFNAKTSDDEGKCSGDFMDLPEPTTTQEQGDECDSHWLSEEELEVHTVSGIDYNQYFGGGVMYWNTSDHPGTGFsrppslssddssWAWHEADIKRAVDDMVAFSSSYSTNGLTSPTAASFCSPFDPLGPGHQAFSYVVPGNEVPGKVLHSSSTTTDVATEEEISGSFASLSGDVDSKALDTlpcpilrpiiipnlSRERSRSDFKRSHEHKSPCVPPSRREQPRIKRPPSpvvlcvpraprppppspvsdsrKTRGFPTVRSGSSSPRHWGVRGWYHEGTTSEEGCVRMDGSEVVWPSWRNKNLSAHPMIQPLSGALLQDHLIAISQLARDQEHPDVAFPLQPLEVQNCPTRKAslslmhsllhEEIDSFCKQVAAENTARKPYINWAVKRVTRSLQVLWPRSRTNIFGSNATGLSLPSSDVDLVVCLPPVRNLEPIKEAGILEGRNGIKETCLQHAARYLANQEWVKSDSLKTVENTAIPIIMLVVEVPHDLIASAASSVQSPKEDAAHTTLKHDNHVHSDMVALDDSASPKCSHTSSDNIKAATSVRLDISFKSPSHTGLQTTDLVKELTEQFPASTPLALVLKQFLADRSLDQSYSGGLSSYCLMLLITRFLQHEHHLGRPINQNYGRLLMDFLYFFGNVFDPRQMRISVQGSGVYIKRERGYSIDPIHIDDPRFPTNNVGRNCFRIHQCIKAFSDAYSILESELTSLTPADDQCSRPPYRLLPKIIPSISLFIS
*****************YFTNSLMAQNQLIDSLTSHISLY******************ILKWFASLTVHQRQAHLTIVDSKFAQLLIQMLGKLRANGHGFFIILPDLPSRDPPYLPGLCYKKSRGLLSRVAE***SGRWVFESTRLFSSREGEKIEEWSCPVNCLDTFTVSVEFVENVDRFIDIMDEISNGGFLRGEESELAGDWVEFDWLKAKGYYSIEAFIVNRLEVGLRLAWLNCNNGKKRGVKLKEKLNAAGMAANVYWRKKGCVDWWMNLDDAMRRKVLTVILGKAAKSLTHEVLKEASNALEDGMWLFNAGMKQSSRFYHSKSLQRTISTLSVDVECGLAISPASLSGIPASLATVFSGLFVLQDITTMVLSSQHNEYDIEKIFFSSLRFVSTTTDCLLRKLRGLLMVVSLDCTKLELFGE******************************************************************************************VC***********************************************************************************************************VV******************************VECNII**********NAFGNSISGINFQNSF******AISVL****I*******************FFGTALKSSLECPSYEWPTIAPVYFPSISSHLLPATDRLHLDVGHNWHNHVRQPFVPTLHQARNHPFDGGCNQILSQPLPMSLDWPPMVQNVSGIAPSVTCNYDSGFIS**************************************************HWLSEEELEVHTVSGIDYNQYFGGGVMYWNT********************WAWHEADIKRAVDDMVAFSSSY*********AASFCSPFDPLGPGHQAFSYVVPG*************************************ALDTLPCPILRPIIIP***************************************************************************HWGVRGWYHEGTTSEEGCVRMDGSEVVWPSWRNKNLSAHPMIQPLSGALLQDHLIAISQLARDQEHPDVAFPLQPLEVQNCPTRKASLSLMHSLLHEEIDSFCKQVAAENTARKPYINWAVKRVTRSLQVLWPRSRTNIFGSNATGLSLPSSDVDLVVCLPPVRNLEPIKEAGILEGRNGIKETCLQHAARYLANQEWVKSDSLKTVENTAIPIIMLVVEVPHDLIA**********************************************************************DLVKELTEQFPASTPLALVLKQFLADRSLDQSYSGGLSSYCLMLLITRFLQHEHHLGRPINQNYGRLLMDFLYFFGNVFDPRQMRISVQGSGVYIKRERGYSIDPIHIDDPRFPTNNVGRNCFRIHQCIKAFSDAYSILESELTSLT********PPYRLLPKIIPSISLF**
*****************************IDSLTS**************************WFASLTVHQRQAHLTIVDSKFAQLLIQMLGKLRANGHGFFIILPDL************YKKS****************VFESTRLFS*********WSCPVNCLDTFTVSVEFVENVDRFIDIMDEISNGGFLRGEES**AGDWVEFDWLKAKGYYSIEAFIVNRLEVGLRLAWLNCNNG***********NAAGMAANVYWRKKGCVDWWMNLDDAMRRKVLTVILGKAAKSLTHEVLKEASNALEDGMWLFNAGM*****************TLSVDVECGLAIS******************FVLQDITTMVLSSQHNEYDIEKIFFSSLRFVSTTTDCLLRKLRGLLMVVSLDCTKLEL***************************************************************************************************************************************************************************************************************************************************************************************************************************************************LHLDVGHNWHNHVRQ*************************LPMSLDWPPMVQNVSGIAPSVTCNYDSGFI******************NAKTSDDEGKCSGDFMDLP*********DECDSHW***********SGIDYNQYFGGGVMYWN**************************ADIKRAVDDMV******************************************************************************DTLPCPILRP**************************************************************************************YHEGTTSEEGCVRMDG**********************************************************************LLHEEIDSFCKQVAAENTARKPYINWAVKRVTRSLQVLWPRSRTNIFGSNATGLSLPSSDVDLVVCLPPVRNLE***********NGIKETCLQHAARYLANQEWVKSDSLKTVENTAIPIIMLVVEVPHDLIASAASSVQSPKEDAAHTTLKHDNHVHSDMVALDDSASPKCSHTSSDNIKAATSVRLDISFKSPSHTGLQTTDLVKELTEQFPASTPLALVLKQFLADRSLDQSYSGGLSSYCLMLLITRFLQHEHHLGRPINQNYGRLLMDFLYFFGNVFDPRQMRISVQGSGVYIKRERGYSIDPIHIDDPRFPTNNVGRNCFRIHQCIKAFSDAYSILESELTSLTP**********RLLPKIIPSISLFIS
**********SQNPLAEYFTNSLMAQNQLIDSLTSHISLYH**************RSSILKWFASLTVHQRQAHLTIVDSKFAQLLIQMLGKLRANGHGFFIILPDLPSRDPPYLPGLCYKKSRGLLSRVAESNESGRWVFESTRLFSSREGEKIEEWSCPVNCLDTFTVSVEFVENVDRFIDIMDEISNGGFLRGEESELAGDWVEFDWLKAKGYYSIEAFIVNRLEVGLRLAWLNCNNGKKRGVKLKEKLNAAGMAANVYWRKKGCVDWWMNLDDAMRRKVLTVILGKAAKSLTHEVLKEASNALEDGMWLFNAGMKQSSRFYHSKSLQRTISTLSVDVECGLAISPASLSGIPASLATVFSGLFVLQDITTMVLSSQHNEYDIEKIFFSSLRFVSTTTDCLLRKLRGLLMVVSLDCTKLELFGEGNFK****************************PLPKSALDELSLDKLPKDPEGALTDTEKVDLMGSDKVPGISNGKDINRETSTSEMEMVVCHQEHARALVAGKGRTNARKTKTVKNKNKNCTYNNPVPVKDPKVSVLETSSSISLQDEVEKYDKLSAQNVSVDNSTCSNVLAS***************IATQSTQEDCVVNSVNSECRRFSNGRIDNQTQHFLQETTDSKVECNIISPDMPARDLDNAFGNSISGINFQNSFHESETGAISVLPDKGIEALEIKKESAVTQDQRNESFFGTALKSSLECPSYEWPTIAPVYFPSISSHLLPATDRLHLDVGHNWHNHVRQPFVPTLHQARNHPFDGGCNQILSQPLPMSLDWPPMVQNVSGIAPSVTCNYDSGFISSRQSGFQQNFATKGMQFNAKTSDDEGKCSGDFMDLPEP***********SHWLSEEELEVHTVSGIDYNQYFGGGVMYWNTSDHPG***************WAWHEADIKRAVDDMVAFSSSYSTNGLTSPTAASFCSPFDPLGPGHQAFSYVVPGNEVPGKVLH************EISGSFASLSGDVDSKALDTLPCPILRPIIIPNLSR*****************************RPPSPVVLCVPRAP***************************RHWGVRGWYHEGTTSEEGCVRMDGSEVVWPSWRNKNLSAHPMIQPLSGALLQDHLIAISQLARDQEHPDVAFPLQPLEVQNCPTRKASLSLMHSLLHEEIDSFCKQVAAENTARKPYINWAVKRVTRSLQVLWPRSRTNIFGSNATGLSLPSSDVDLVVCLPPVRNLEPIKEAGILEGRNGIKETCLQHAARYLANQEWVKSDSLKTVENTAIPIIMLVVEVPHDLIASAA**************LKHDNHVHSDMVAL*************DNIKAATSVRLDISFKSPSHTGLQTTDLVKELTEQFPASTPLALVLKQFLADRSLDQSYSGGLSSYCLMLLITRFLQHEHHLGRPINQNYGRLLMDFLYFFGNVFDPRQMRISVQGSGVYIKRERGYSIDPIHIDDPRFPTNNVGRNCFRIHQCIKAFSDAYSILESELTSLTPADDQCSRPPYRLLPKIIPSISLFIS
********************NSLMAQNQLIDSLTSHISLYHSH*************SSILKWFASLTVHQRQAHLTIVDSKFAQLLIQMLGKLRANGHGFFIILPDLPSRDPPYLPGLCYKKSRGLLSRVAESNESGRWVFESTRLFS********EWSCPVNCLDTFTVSVEFVENVDRFIDIMDEISNGGFLRGEESELAGDWVEFDWLKAKGYYSIEAFIVNRLEVGLRLAWLNCNNGKKRGVKLKEKLNAAGMAANVYWRKKGCVDWWMNLDDAMRRKVLTVILGKAAKSLTHEVLKEASNALEDGMWLFNAGMKQSSRFYHSKSLQRTISTLSVDVECGLAISPASLSGIPASLATVFSGLFVLQDITTMVLSSQHNEYDIEKIFFSSLRFVSTTTDCLLRKLRGLLMVVSLDCTKLELFGE************************************************************************************SEMEMVVCHQEHARALVAG********************************SVLETSSSISL*DEVEKYDKLSAQNVSVDNSTCSNVLASNQSSCT***********************************************************************NSISGINFQNSFHESETGAISVLPDKGIEALEIKKESAVTQDQRNESFFGTALKSSLECPSYEWPTIAPVYFPSISSHLLPATDRLHLDVGHNWHNHVRQPFVPTLHQARNHPFDGGCNQILSQPLPMSLDWPPMVQNVSGIAPSVTCNYDSGFISSRQSGFQQNFATKGMQFNAKTSDDEGKCSGDFMDLPEPTTTQEQGDECDSHWLSEEELEVHTVSGIDYNQYFGGGVMYWNTSDHPGTGFSRP*SLSSDDSSWAWHEADIKRAVDDMVAFSSSYSTNGLTSPTAASFCSPFDPLGPGHQAFSYVVPGNEVPGK****************ISGSFASLSGDVDSKALDTLPCPILRPIIIPNL**************************QPRIKRPPSPVVLCVPRAPRPP*********************SSPRHWGVRGWYHEGTTSEEGCVRMDGSEVVWPSWRNKNLSAHPMIQPLSGALLQDHLIAISQLARDQEHPDVAFPLQPLEVQNCPTRKASLSLMHSLLHEEIDSFCKQVAAENTARKPYINWAVKRVTRSLQVLWPRSRTNIFGSNATGLSLPSSDVDLVVCLPPVRNLEPIKEAGILEGRNGIKETCLQHAARYLANQEWVKSDSLKTVENTAIPIIMLVVEVPHDLIASAASSVQSPKEDAAHTTLKHDNHVHSDMVALDDSASPKCSHTSSDNIKAATSVRLDISFKSPSHTGLQTTDLVKELTEQFPASTPLALVLKQFLADRSLDQSYSGGLSSYCLMLLITRFLQHEHHLGRPINQNYGRLLMDFLYFFGNVFDPRQMRISVQGSGVYIKRERGYSIDPIHIDDPRFPTNNVGRNCFRIHQCIKAFSDAYSILESELTSLTPADDQCSRPPYRLLPKIIPSISLFIS
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSKSNPRPNLSQNPLAEYFTNSLMAQNQLIDSLTSHISLYHSHSLSSNPNPSSNPRSSILKWFASLTVHQRQAHLTIVDSKFAQLLIQMLGKLRANGHGFFIILPDLPSRDPPYLPGLCYKKSRGLLSRVAESNESGRWVFESTRLFSSREGEKIEEWSCPVNCLDTFTVSVEFVENVDRFIDIMDEISNGGFLRGEESELAGDWVEFDWLKAKGYYSIEAFIVNRLEVGLRLAWLNCNNGKKRGVKLKEKLNAAGMAANVYWRKKGCVDWWMNLDDAMRRKVLTVILGKAAKSLTHEVLKEASNALEDGMWLFNAGMKQSSRFYHSKSLQRTISTLSVDVECGLAISPASLSGIPASLATVFSGLFVLQDITTMVLSSQHNEYDIEKIFFSSLRFVSTTTDCLLRKLRGLLMVVSLDCTKLELFGEGNFKSSPNKSKEKPSTIGRRKKCRACSTKRQNPLPKSALDELSLDKLPKDPEGALTDTEKVDLMGSDKVPGISNGKDINRETSTSEMEMVVCHQEHARALVAGKGRTNARKTKTVKNKNKNCTYNNPVPVKDPKVSVLETSSSISLQDEVEKYDKLSAQNVSVDNSTCSNVLASNQSSCTSASVPAREGIATQSTQEDCVVNSVNSECRRFSNGRIDNQTQHFLQETTDSKVECNIISPDMPARDLDNAFGNSISGINFQNSFHESETGAISVLPDKGIEALEIKKESAVTQDQRNESFFGTALKSSLECPSYEWPTIAPVYFPSISSHLLPATDRLHLDVGHNWHNHVRQPFVPTLHQARNHPFDGGCNQILSQPLPMSLDWPPMVQNVSGIAPSVTCNYDSGFISSRQSGFQQNFATKGMQFNAKTSDDEGKCSGDFMDLPEPTTTQEQGDECDSHWLSEEELEVHTVSGIDYNQYFGGGVMYWNTSDHPGTGFSRPPSLSSDDSSWAWHEADIKRAVDDMVAFSSSYSTNGLTSPTAASFCSPFDPLGPGHQAFSYVVPGNEVPGKVLHSSSTTTDVATEEEISGSFASLSGDVDSKALDTLPCPILRPIIIPNLSRERSRSDFKRSHEHKSPCVPPSRREQPRIKRPPSPVVLCVPRAPRPPPPSPVSDSRKTRGFPTVRSGSSSPRHWGVRGWYHEGTTSEEGCVRMDGSEVVWPSWRNKNLSAHPMIQPLSGALLQDHLIAISQLARDQEHPDVAFPLQPLEVQNCPTRKASLSLMHSLLHEEIDSFCKQVAAENTARKPYINWAVKRVTRSLQVLWPRSRTNIFGSNATGLSLPSSDVDLVVCLPPVRNLEPIKEAGILEGRNGIKETCLQHAARYLANQEWVKSDSLKTVENTAIPIIMLVVEVPHDLIASAASSVQSPKEDAAHTTLKHDNHVHSDMVALDDSASPKCSHTSSDNIKAATSVRLDISFKSPSHTGLQTTDLVKELTEQFPASTPLALVLKQFLADRSLDQSYSGGLSSYCLMLLITRFLQHEHHLGRPINQNYGRLLMDFLYFFGNVFDPRQMRISVQGSGVYIKRERGYSIDPIHIDDPRFPTNNVGRNCFRIHQCIKAFSDAYSILESELTSLTPADDQCSRPPYRLLPKIIPSISLFIS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1588 2.2.26 [Sep-21-2011]
Q8NDF8 572 PAP-associated domain-con yes no 0.163 0.452 0.270 2e-24
Q68ED3 633 PAP-associated domain-con yes no 0.163 0.409 0.270 2e-24
Q5XG87 542 DNA polymerase sigma OS=H no no 0.120 0.352 0.315 4e-21
Q6PB75 542 DNA polymerase sigma OS=M no no 0.120 0.352 0.315 5e-21
Q9UTN3 684 Poly(A) RNA polymerase ci yes no 0.117 0.271 0.290 3e-16
P53632584 Poly(A) RNA polymerase pr yes no 0.160 0.436 0.253 1e-15
G5EFL0 845 Poly(A) RNA polymerase gl yes no 0.098 0.184 0.331 2e-15
P48561 642 Poly(A) RNA polymerase pr no no 0.160 0.397 0.256 4e-15
Q9HFW3 626 Poly(A) RNA polymerase pr yes no 0.158 0.402 0.260 3e-14
O74518336 Poly(A) RNA polymerase ci no no 0.096 0.458 0.243 7e-05
>sp|Q8NDF8|PAPD5_HUMAN PAP-associated domain-containing protein 5 OS=Homo sapiens GN=PAPD5 PE=1 SV=2 Back     alignment and function desciption
 Score =  115 bits (289), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 96/355 (27%), Positives = 148/355 (41%), Gaps = 96/355 (27%)

Query: 1213 LHEEIDSFCKQVAAENTARKPYINWAVKRVTRSLQVLWPRSRTNIFGSNATGLSLPSSDV 1272
            LHEEI  F + ++      K  +   V R+   ++ LWP +   IFGS  TGL LP+SD+
Sbjct: 120  LHEEISDFYEYMSPRPEEEKMRME-VVNRIESVIKELWPSADVQIFGSFKTGLYLPTSDI 178

Query: 1273 DLVVC-----LPPVRNLEPIKEAGILEGRNGIKETCLQHAARYLANQEWVKSDSLKTVEN 1327
            DLVV      LP    L  ++EA                    L   +    DS+K ++ 
Sbjct: 179  DLVVFGKWENLP----LWTLEEA--------------------LRKHKVADEDSVKVLDK 214

Query: 1328 TAIPIIMLVVEVPHDLIASAASSVQSPKEDAAHTTLKHDNHVHSDMVALDDSASPKCSHT 1387
              +PII L                       + T +K D                  S  
Sbjct: 215  ATVPIIKLT---------------------DSFTEVKVD-----------------ISFN 236

Query: 1388 SSDNIKAATSVRLDISFKSPSHTGLQTTDLVKELTEQFPASTPLALVLKQFLADRSLDQS 1447
              + ++AA  ++                    + T+++P    L LVLKQFL  R L++ 
Sbjct: 237  VQNGVRAADLIK--------------------DFTKKYPVLPYLVLVLKQFLLQRDLNEV 276

Query: 1448 YSGGLSSYCLMLLITRFLQ-HEHHLGRPINQNYGRLLMDFLYFFGNVFDPRQMRISVQGS 1506
            ++GG+ SY L L+   FLQ H        N NYG LL++F   +G  F+  +  I ++  
Sbjct: 277  FTGGIGSYSLFLMAVSFLQLHPREDACIPNTNYGVLLIEFFELYGRHFNYLKTGIRIKDG 336

Query: 1507 GVYIKRER-------GYSIDPIHIDDPRFPTNNVGRNCFRIHQCIKAFSDAYSIL 1554
            G Y+ ++        GY    ++I+DP  P N+VGR+ +   Q  +AF  AY +L
Sbjct: 337  GSYVAKDEVQKNMLDGYRPSMLYIEDPLQPGNDVGRSSYGAMQVKQAFDYAYVVL 391
Plays a role in replication-dependent histone mRNA degradation. May be involved in the terminal uridylation of mature histone mRNAs before their degradation is initiated. DNA polymerase, probably involved in DNA repair. May play a role in sister chromatid cohesion.
Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: -
>sp|Q68ED3|PAPD5_MOUSE PAP-associated domain-containing protein 5 OS=Mus musculus GN=Papd5 PE=2 SV=2 Back     alignment and function description
>sp|Q5XG87|PAPD7_HUMAN DNA polymerase sigma OS=Homo sapiens GN=PAPD7 PE=1 SV=2 Back     alignment and function description
>sp|Q6PB75|PAPD7_MOUSE DNA polymerase sigma OS=Mus musculus GN=Papd7 PE=2 SV=1 Back     alignment and function description
>sp|Q9UTN3|CID14_SCHPO Poly(A) RNA polymerase cid14 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cid14 PE=1 SV=2 Back     alignment and function description
>sp|P53632|PAP2_YEAST Poly(A) RNA polymerase protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PAP2 PE=1 SV=1 Back     alignment and function description
>sp|G5EFL0|GLD4_CAEEL Poly(A) RNA polymerase gld-4 OS=Caenorhabditis elegans GN=gld-4 PE=1 SV=1 Back     alignment and function description
>sp|P48561|TRF5_YEAST Poly(A) RNA polymerase protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRF5 PE=1 SV=2 Back     alignment and function description
>sp|Q9HFW3|TRF5_ASHGO Poly(A) RNA polymerase protein 1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=TRF5 PE=3 SV=1 Back     alignment and function description
>sp|O74518|CID12_SCHPO Poly(A) RNA polymerase cid12 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cid12 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1588
2241299261566 predicted protein [Populus trichocarpa] 0.964 0.978 0.628 0.0
2977345321331 unnamed protein product [Vitis vinifera] 0.833 0.993 0.648 0.0
4494329961526 PREDICTED: uncharacterized protein LOC10 0.941 0.979 0.576 0.0
4494782461514 PREDICTED: LOW QUALITY PROTEIN: uncharac 0.931 0.976 0.569 0.0
3341862401481 Nucleotidyltransferase family protein [A 0.920 0.987 0.577 0.0
1478190781500 hypothetical protein VITISV_000637 [Viti 0.853 0.904 0.593 0.0
2555411761420 nucleotidyltransferase, putative [Ricinu 0.707 0.791 0.634 0.0
3565064281436 PREDICTED: uncharacterized protein LOC10 0.718 0.794 0.612 0.0
297810181840 hypothetical protein ARALYDRAFT_912246 [ 0.525 0.992 0.690 0.0
19699089839 AT4g00060/F6N15_10 [Arabidopsis thaliana 0.519 0.983 0.698 0.0
>gi|224129926|ref|XP_002320705.1| predicted protein [Populus trichocarpa] gi|222861478|gb|EEE99020.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1912 bits (4953), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1014/1613 (62%), Positives = 1190/1613 (73%), Gaps = 81/1613 (5%)

Query: 1    MSKSNPRPNLSQNPLAEYFTNSLMAQNQLIDSLTSHISLYHSHSLSSNPNPSSNPRSSIL 60
            MS  NP  N S++   +   N+LM QN LI SLTSHISLYHS S   +    +  RSSIL
Sbjct: 1    MSVPNPNNNFSKH---QNIPNALMTQNHLIGSLTSHISLYHSQSNPPSSPNPNP-RSSIL 56

Query: 61   KWFASLTVHQRQAHLTIVDSKFAQLLIQMLGKLRANGHGFFIILPDLPSRDPPYLPGLCY 120
            KWF SL+VHQRQ+HLT VD KF Q+L+QML KL ++GH  FIILPDL SRD   LP LC+
Sbjct: 57   KWFKSLSVHQRQSHLTTVDFKFTQILLQMLAKLHSHGHCRFIILPDLLSRD---LPSLCF 113

Query: 121  KKSRGLLSRVAESNESGRWVFESTRLFSSREGEKIEEWSCPVNCLDTFTVSVEFVENVDR 180
            KKSRGLLSR+AESNES R +FESTRLFSSREGEK+++       LD+ TVS + +ENV++
Sbjct: 114  KKSRGLLSRIAESNESERLIFESTRLFSSREGEKVDDCRSGAEGLDSVTVSEDLIENVEK 173

Query: 181  FIDIMDEISNGGFLRGEESELAGDWVEFDWLKAKGYYSIEAFIVNRLEVGLRLAWLNCNN 240
            F+++MD+ISNGGFLRGEESEL  DWVE +WLK +GYY IEAF+ N+LEV LRLAWLNC N
Sbjct: 174  FVELMDDISNGGFLRGEESELGTDWVELEWLKVRGYYCIEAFLANKLEVALRLAWLNCGN 233

Query: 241  GKKRGVKLKEKLNAAGMAANVYWRKKGCVDWWMNLDDAMRRKVLTVILGKAAKSLTHEVL 300
            GKKRGVKLKEKL+AAG+AANV+WR+KGCVDWW NLD  +RRKVL   LGKAAKSLT E+L
Sbjct: 234  GKKRGVKLKEKLSAAGVAANVFWRRKGCVDWWRNLDAEVRRKVLNFALGKAAKSLTREIL 293

Query: 301  KEASNALEDGMWLFNAGMKQSSRFYHSKSLQRTISTLSVDVECGLAISPASLSGIPASLA 360
            K+ S    D + LF AG+++  R  H++S QR    L  D E GLA  P S SG  AS A
Sbjct: 294  KDVSGVSGDELSLFRAGVQRPWRDLHAESRQRIFLKLPADAEFGLAPKP-SFSGKDASFA 352

Query: 361  TVFSGLFVLQDITTMVLSSQHNEYDIEKIFFSSLRFVSTTTDCLLRKLRGLLMVVSLDCT 420
             +F+ LFVLQDI ++VL  Q +EYD   IFFS L  + T +DC+LRKLRGL+MV+SLDCT
Sbjct: 353  NIFNSLFVLQDIVSLVLPDQGSEYDTSHIFFSMLGSLGTLSDCILRKLRGLVMVISLDCT 412

Query: 421  KLELFGEGNFKSSPNKSKEKPSTIGRRKKCRACSTKR-QNPLPKSALDELSLDKLPKDPE 479
            +LEL GEG   SS NK  EK     RRKK +  + K+  NP P  ++DE S  KL +D +
Sbjct: 413  RLELLGEGTSNSSANKPSEKLGAGSRRKKGKTQNMKKLMNPTPVKSVDESSFKKLAEDIK 472

Query: 480  GALTDTEKVDLMGSDKVPGISNGKDINRETSTSEMEMVVCHQEHARALVAGKGRTNARKT 539
             A    +K +LM S+++PGI +  + +R+ S+  +EM     EH + LV  K RT  RK 
Sbjct: 473  CAPACIKKTELMESNEMPGIPHENENHRDISSPTVEM-----EHTQGLVHEKKRTAGRKN 527

Query: 540  KTVKNKNKNCTYNNPVPVKDPKVSVLETSS-SISLQDEVEKYDKLSAQNVSVDNSTCSNV 598
            +  +NK K  +++NPV V+ P+++V E  S S+   DE  K  +LS      DN T    
Sbjct: 528  RKGRNKKKKSSFSNPVEVRKPEIAVSEAPSFSVCSSDEEAKLCRLS------DNLTTQK- 580

Query: 599  LASNQSSCT-SASVPAREGIATQSTQEDCVVNSVNS------ECRRFSNGRIDNQTQHFL 651
             ASN S    S + P R+ I      ED  V           E  R SNG +DN++    
Sbjct: 581  -ASNDSLIDPSINEPTRKEIDALGIPEDHAVGCTEGISDAGLEHYRSSNGFVDNKSMPSR 639

Query: 652  QETTDSKVECNIISPDMPARDLDNAFGNSISGINFQNSFHESETGAISVLPDKGIEALEI 711
            +ET    V  NII      ++L     N   G +F N   E +      + +K +   E+
Sbjct: 640  RETR-CGVGQNIIYQVATTKELITVSSNE--GTSFLNKKTEVKLD----VGNKLVRTHEV 692

Query: 712  KKESAVTQDQRNESFFGTALKSSLECPSYEWPTIAPVYFPSISSHLLPATDRLHLDVGHN 771
            K+   + + + +E+F  +  K   +C SYEWP++ PVYFPSI+SHL PAT RLHLDVGHN
Sbjct: 693  KEVPTLNRREESENFHESGSKGLSDCLSYEWPSLGPVYFPSINSHLPPATYRLHLDVGHN 752

Query: 772  WHNHVRQPFVPTLHQARNHPFDGGCNQILSQPLPMSLDWPPMVQNVSGIAPSVTCNYDSG 831
            WHNH+ QPF+PT+HQARN P +GG N++LSQPLPMSLDWPPMV++  G+AP++TCNYDSG
Sbjct: 753  WHNHIHQPFLPTVHQARNSPIEGGSNRMLSQPLPMSLDWPPMVRSNCGLAPTMTCNYDSG 812

Query: 832  FISSRQSGFQQNFATKGMQFNAKTSDDEGKCSGDFMDLPEPTTTQEQGDECDSHWLSEEE 891
            FIS  QS FQ+++  K MQ+ +KT DDE +CSGD +D  E T++QE  DE ++HW+SEEE
Sbjct: 813  FISRWQSTFQKSYTAKNMQYISKTFDDERRCSGDAIDFTEATSSQELMDEYENHWISEEE 872

Query: 892  LEVHTVSGIDYNQYFGGGVMYWNTSDHPGTGFSRPPSLSSDDSSWAWHEADIKRAVDDMV 951
             EVH VSGIDYNQ+FGGGVMYW+ SDHPGTGFSRPPSLSSDDS W WHEA++ RAVDDMV
Sbjct: 873  YEVHAVSGIDYNQHFGGGVMYWDPSDHPGTGFSRPPSLSSDDSGWPWHEAELNRAVDDMV 932

Query: 952  AFSSSYSTNGLTSPTAASFCSPFDPLGPGHQAFSYVVPGNEVPGKVLHSSSTTTDVATEE 1011
            AFSSSYST GLTSPTAASFCS FDPL PGHQA  YV+ GNEVPGK +  SST TD A EE
Sbjct: 933  AFSSSYSTTGLTSPTAASFCSAFDPLVPGHQALGYVMSGNEVPGKAM-LSSTVTDAAAEE 991

Query: 1012 EISGSFASLSGDVDSKALDTLPCPILRPIIIPNLSRERSRSDFKRSHEHKSPCVPPSRRE 1071
            ++SGS ASLS DV+ KA D+LP PILRPIIIPN+SRERSRSDFKRS +HKSPCVPP+RRE
Sbjct: 992  DVSGSLASLSSDVEGKAGDSLPYPILRPIIIPNMSRERSRSDFKRSLDHKSPCVPPTRRE 1051

Query: 1072 QPRIKRPPSPVVLCVPRAPRPPPPSPVSDSRKTRGFPTVRSGSSSPRHWGVRGWYHEGTT 1131
             PRIKRPPSPVVLCVPRAPRPPPPSPVSDSRK RGFPTVRSGSSSPR WGVRGWYH+GT 
Sbjct: 1052 HPRIKRPPSPVVLCVPRAPRPPPPSPVSDSRKHRGFPTVRSGSSSPRQWGVRGWYHDGTN 1111

Query: 1132 SEEGCVRMDGSEVVWPSWRNKNLSAHPMIQPLSGALLQDHLIAISQLARDQEH------- 1184
             EE C RMDG+EVVWPSWRNK LS HPM+QPL GALLQD LIA+S LARDQ+H       
Sbjct: 1112 LEEACGRMDGAEVVWPSWRNKKLSTHPMVQPLPGALLQDRLIAMSHLARDQDHVSVLLYC 1171

Query: 1185 --PDVAFPLQPLEVQNCPTRKASLSLMHSLLHEEIDSFCKQVAAENTARKPYINWAVKRV 1242
              PDV FPLQ  E+QNCPTRKASL L+ SLLH+EIDSFCKQVAA N ARKP+INWAVKRV
Sbjct: 1172 AIPDVLFPLQRAEIQNCPTRKASLCLVQSLLHDEIDSFCKQVAAANMARKPFINWAVKRV 1231

Query: 1243 TRSLQVLWPRSRTNIFGSNATGLSLPSSDVDLVVCLPPVRNLEPIKEAGILEGRNGIKET 1302
            TRSLQVLWPRSR NIFGS+ATGL+LP+SDVDLVVCLPPVRNLEPIKEAGILEGRNGIKET
Sbjct: 1232 TRSLQVLWPRSRINIFGSSATGLALPTSDVDLVVCLPPVRNLEPIKEAGILEGRNGIKET 1291

Query: 1303 CLQHAARYLANQEWVKSDSLKTVENTAIPIIMLVVEVPHDLIASAASSVQSPKEDAAHTT 1362
            CLQ                        IP+IMLVVEVP DLI SAAS+VQSPKE+  H T
Sbjct: 1292 CLQ------------------------IPVIMLVVEVPTDLITSAASNVQSPKEEPIHLT 1327

Query: 1363 LKHDNHVHSDMVALDDSASPKCSHTSSDNIKAATSVRLDISFKSPSHTGLQTTDLVKELT 1422
             +HD  V S+MV L+DS SPKC+  + D+ +   S+RLDISFKSPSHTGLQTT LVK+LT
Sbjct: 1328 GEHDIQVQSNMVVLEDSISPKCTQLNCDSKRDVKSIRLDISFKSPSHTGLQTTQLVKDLT 1387

Query: 1423 EQFPASTPLALVLKQFLADRSLDQSYSGGLSSYCLMLLITRFLQHEHHLGRPINQ----- 1477
            EQFPA+TPLALVLKQFLADRSLDQSYSGGLSSYCL+LLI RFLQHEHHLGRPINQ     
Sbjct: 1388 EQFPAATPLALVLKQFLADRSLDQSYSGGLSSYCLVLLIIRFLQHEHHLGRPINQCSLLK 1447

Query: 1478 -----NYGRLLMDFLYFFGNVFDPRQMRISVQGSGVYIKRERGYSIDPIHIDDPRFPTNN 1532
                 N G LLMD LYFFGNVFDPRQMRISVQGSGVYI RERGYSIDPIHIDDP FPTNN
Sbjct: 1448 TSDVLNVGSLLMDLLYFFGNVFDPRQMRISVQGSGVYINRERGYSIDPIHIDDPLFPTNN 1507

Query: 1533 VGRNCFRIHQCIKAFSDAYSILESELTSLTPADDQCSRPPYRLLPKIIPSISL 1585
            VGRNCFRIHQCIKAFS+AYS+LE EL  L    D CSRP +RLLPKIIPSI +
Sbjct: 1508 VGRNCFRIHQCIKAFSEAYSVLEKELACLPDEGDTCSRPAHRLLPKIIPSIDI 1560

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297734532|emb|CBI16583.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449432996|ref|XP_004134284.1| PREDICTED: uncharacterized protein LOC101221970 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449478246|ref|XP_004155262.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101221970 [Cucumis sativus] Back     alignment and taxonomy information
>gi|334186240|ref|NP_191917.3| Nucleotidyltransferase family protein [Arabidopsis thaliana] gi|332656419|gb|AEE81819.1| Nucleotidyltransferase family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|147819078|emb|CAN65347.1| hypothetical protein VITISV_000637 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255541176|ref|XP_002511652.1| nucleotidyltransferase, putative [Ricinus communis] gi|223548832|gb|EEF50321.1| nucleotidyltransferase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356506428|ref|XP_003521985.1| PREDICTED: uncharacterized protein LOC100809291 [Glycine max] Back     alignment and taxonomy information
>gi|297810181|ref|XP_002872974.1| hypothetical protein ARALYDRAFT_912246 [Arabidopsis lyrata subsp. lyrata] gi|297318811|gb|EFH49233.1| hypothetical protein ARALYDRAFT_912246 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|19699089|gb|AAL90911.1| AT4g00060/F6N15_10 [Arabidopsis thaliana] gi|25090419|gb|AAN72296.1| At4g00060/F6N15_10 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1588
UNIPROTKB|I3LUY3 500 PAPD5 "Uncharacterized protein 0.120 0.382 0.325 5.2e-25
UNIPROTKB|F1NJM3370 PAPD7 "Uncharacterized protein 0.103 0.443 0.344 8.6e-25
UNIPROTKB|Q8NDF8 572 PAPD5 "PAP-associated domain-c 0.120 0.333 0.325 1.1e-24
UNIPROTKB|F1NCH7 501 PAPD5 "Uncharacterized protein 0.120 0.381 0.315 1.6e-24
UNIPROTKB|E9PC61 619 PAPD5 "PAP-associated domain-c 0.120 0.308 0.325 1.7e-24
MGI|MGI:1917820 633 Papd5 "PAP associated domain c 0.120 0.301 0.325 1.9e-24
UNIPROTKB|F1PHH1 673 PAPD5 "Uncharacterized protein 0.120 0.283 0.325 2.4e-24
UNIPROTKB|B4DV38 698 PAPD5 "PAP-associated domain-c 0.120 0.273 0.325 2.8e-24
UNIPROTKB|J9P5I2 614 PAPD5 "Uncharacterized protein 0.120 0.311 0.325 1.1e-23
UNIPROTKB|E1BX86 423 PAPD7 "Uncharacterized protein 0.103 0.387 0.344 1.1e-23
UNIPROTKB|I3LUY3 PAPD5 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
 Score = 260 (96.6 bits), Expect = 5.2e-25, Sum P(2) = 5.2e-25
 Identities = 67/206 (32%), Positives = 106/206 (51%)

Query:  1364 KHDNHVHSDMVALDDSASPKCSHTSSDNIKAATSVRLDISFKSPSHTGLQTTDLVKELTE 1423
             KH       +  LD +  P    T S      T V++DISF   +  G++  DL+K+ T+
Sbjct:    81 KHKVADEDSVKVLDKATVPIIKLTDS-----FTEVKVDISFNVQN--GVRAADLIKDFTK 133

Query:  1424 QFPASTPLALVLKQFLADRSLDQSYSGGLSSYCLMLLITRFLQ-HEHHLGRPINQNYGRL 1482
             ++P    L LVLKQFL  R L++ ++GG+ SY L L+   FLQ H        N NYG L
Sbjct:   134 KYPVLPYLVLVLKQFLLQRDLNEVFTGGIGSYSLFLMAVSFLQLHPREDACIPNTNYGVL 193

Query:  1483 LMDFLYFFGNVFDPRQMRISVQGSGVYIKRER-------GYSIDPIHIDDPRFPTNNVGR 1535
             L++F   +G  F+  +  I ++  G Y+ ++        GY    ++I+DP  P N+VGR
Sbjct:   194 LIEFFELYGRHFNYLKTGIRIKDGGSYVAKDEVQKNMLDGYRPSMLYIEDPLQPGNDVGR 253

Query:  1536 NCFRIHQCIKAFSDAYSILESELTSL 1561
             + +   Q  +AF  AY +L   ++ +
Sbjct:   254 SSYGAMQVKQAFDYAYVVLSHAVSPI 279
GO:0016779 "nucleotidyltransferase activity" evidence=IEA
UNIPROTKB|F1NJM3 PAPD7 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q8NDF8 PAPD5 "PAP-associated domain-containing protein 5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1NCH7 PAPD5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E9PC61 PAPD5 "PAP-associated domain-containing protein 5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1917820 Papd5 "PAP associated domain containing 5" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1PHH1 PAPD5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|B4DV38 PAPD5 "PAP-associated domain-containing protein 5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|J9P5I2 PAPD5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E1BX86 PAPD7 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.7.7LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1588
COG5260 482 COG5260, TRF4, DNA polymerase sigma [DNA replicati 2e-18
cd05402114 cd05402, NT_PAP_TUTase, Nucleotidyltransferase (NT 2e-08
COG5260482 COG5260, TRF4, DNA polymerase sigma [DNA replicati 2e-06
pfam0382859 pfam03828, PAP_assoc, Cid1 family poly A polymeras 3e-06
pfam0190992 pfam01909, NTP_transf_2, Nucleotidyltransferase do 7e-06
>gnl|CDD|227585 COG5260, TRF4, DNA polymerase sigma [DNA replication, recombination, and repair] Back     alignment and domain information 
 Score = 90.2 bits (224), Expect = 2e-18
 Identities = 49/188 (26%), Positives = 83/188 (44%), Gaps = 22/188 (11%)

Query: 1396 TSVRLDISFKSPSHTGLQTTDLVKELTEQFPASTPLALVLKQFLADRSLDQSYSGGLSSY 1455
            + +  DISF + +  G+    L++   ++ P   PL L++K +L  R+L+   +G LSSY
Sbjct: 166  SGLHCDISFNNTN--GIVNAKLIRSYLKEDPRLRPLVLIIKHWLKRRALNDVATGTLSSY 223

Query: 1456 CLMLLITRFLQH------------EHHLGRPINQNYGRLLMDFLYFFGNVFDPRQMRISV 1503
             +  ++  FLQ                       N G L  DF   +G  F+   + +S+
Sbjct: 224  TISCMVLSFLQMHPPFLFFDNGLLSPLKYNKNIDNLGVLFDDFFELYGKSFNYSLVVLSI 283

Query: 1504 QGSGVYI-KRERGYSIDPIH-----IDDPRF-PTNNVGRNCFRIHQCIKAFSDAYSILES 1556
                 Y+ K E+G+ + P       I DP     N++    F I     AF  A+ +L +
Sbjct: 284  NSGDFYLPKYEKGW-LKPSKPNSLSIQDPGTDRNNDISAVSFNIKDIKAAFIRAFELLSN 342

Query: 1557 ELTSLTPA 1564
            +L +LT A
Sbjct: 343  KLFTLTSA 350

Length = 482
>gnl|CDD|143392 cd05402, NT_PAP_TUTase, Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases Back     alignment and domain information
>gnl|CDD|227585 COG5260, TRF4, DNA polymerase sigma [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|217750 pfam03828, PAP_assoc, Cid1 family poly A polymerase Back     alignment and domain information
>gnl|CDD|216779 pfam01909, NTP_transf_2, Nucleotidyltransferase domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1588
COG5260 482 TRF4 DNA polymerase sigma [DNA replication, recomb 100.0
KOG1906 514 consensus DNA polymerase sigma [Replication, recom 100.0
PTZ00418 593 Poly(A) polymerase; Provisional 99.88
KOG2277 596 consensus S-M checkpoint control protein CID1 and 99.88
cd05402114 NT_PAP_TUTase Nucleotidyltransferase (NT) domain o 99.8
KOG2245 562 consensus Poly(A) polymerase and related nucleotid 99.76
COG5186 552 PAP1 Poly(A) polymerase [RNA processing and modifi 99.49
TIGR03671 408 cca_archaeal CCA-adding enzyme. 99.26
PRK13300 447 tRNA CCA-pyrophosphorylase; Provisional 99.26
PF04928254 PAP_central: Poly(A) polymerase central domain; In 99.2
PF0382860 PAP_assoc: Cid1 family poly A polymerase; InterPro 99.09
COG1746 443 CCA1 tRNA nucleotidyltransferase (CCA-adding enzym 98.7
KOG1906514 consensus DNA polymerase sigma [Replication, recom 98.47
PF0190993 NTP_transf_2: Nucleotidyltransferase domain A subs 97.75
cd0539749 NT_Pol-beta-like Nucleotidyltransferase (NT) domai 97.43
PF09249114 tRNA_NucTransf2: tRNA nucleotidyltransferase, seco 97.01
cd0540393 NT_KNTase_like Nucleotidyltransferase (NT) domain 96.87
PF10421190 OAS1_C: 2'-5'-oligoadenylate synthetase 1, domain 96.81
PF03813 972 Nrap: Nrap protein; InterPro: IPR005554 Members of 96.28
cd05400143 NT_2-5OAS_ClassI-CCAase Nucleotidyltransferase (NT 95.94
smart00572246 DZF domain in DSRM or ZnF_C2H2 domain containing p 95.89
COG1708128 Predicted nucleotidyltransferases [General functio 95.5
COG166997 Predicted nucleotidyltransferases [General functio 94.84
PRK13746262 aminoglycoside resistance protein; Provisional 93.69
PF07528248 DZF: DZF domain; InterPro: IPR006561 This domain i 89.97
KOG2054 1121 consensus Nucleolar RNA-associated protein (NRAP) 87.13
PF14792112 DNA_pol_B_palm: DNA polymerase beta palm ; PDB: 1R 86.75
KOG3793362 consensus Transcription factor NFAT, subunit NF45 86.45
>COG5260 TRF4 DNA polymerase sigma [DNA replication, recombination, and repair] Back     alignment and domain information 
Probab=100.00  E-value=8e-42  Score=394.35  Aligned_cols=278  Identities=28%  Similarity=0.462  Sum_probs=233.3

Q ss_pred             HHHHHHHHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHhccCCCCceEEecccccCCCCCCCCceEEEEcCCCCCCccccc
Q 000387         1210 HSLLHEEIDSFCKQVAAENTARKPYINWAVKRVTRSLQVLWPRSRTNIFGSNATGLSLPSSDVDLVVCLPPVRNLEPIKE 1289 (1588)
Q Consensus      1210 ~s~LheEIldF~k~I~PEeeeRK~~I~~AVkrVe~vIQsLwPdArVepFGS~ATGLaLPsSDIDLVVi~PpvrnlEPike 1289 (1588)
                      ...|+.||.+|+.+++|+.++-+ .+..++++|+.++.+.||++.+.+|||+.|||++|.|||||||..++....+    
T Consensus        54 ~~~lt~el~~~y~~I~ps~eEl~-~R~~~leklr~~lk~~~pda~l~vFGS~~t~L~l~~SDiDl~I~s~~~~~~e----  128 (482)
T COG5260          54 SDELTSELLEFYDYIAPSDEELK-RRKALLEKLRTLLKKEFPDADLKVFGSTETGLALPKSDIDLCIISDPRGYKE----  128 (482)
T ss_pred             HHHHHHHHHHHHHhhCCCHHHHH-HHHHHHHHHHHHHHHhCCccceeEecccccccccCcccccEEEecCCccccc----
Confidence            34799999999999999643222 1356899999999999999999999999999999999999999987543322    


Q ss_pred             ccccccccchhHHHHHHHHHHHhhcCCcccCCeEEecCCCccEEEEEEccCchhhhhhccccCCCcccccccccccCCcc
Q 000387         1290 AGILEGRNGIKETCLQHAARYLANQEWVKSDSLKTVENTAIPIIMLVVEVPHDLIASAASSVQSPKEDAAHTTLKHDNHV 1369 (1588)
Q Consensus      1290 AGiLE~RN~IKet~Lq~LAR~Lr~~~~Vks~sVqvIenARVPIIKfv~dVP~DLs~~y~~~i~Sske~pv~i~~~~~spv 1369 (1588)
                           .++.     +..+.-++++..|.   .+++|.+||||||||++                                
T Consensus       129 -----t~~~-----~~l~~~l~~~~~~~---~~~~v~tarVPIIKl~d--------------------------------  163 (482)
T COG5260         129 -----TRNA-----GSLASHLFKKNLAK---EVVVVSTARVPIIKLVD--------------------------------  163 (482)
T ss_pred             -----cccH-----HHHHHHHHHhccCe---eeEEEEecccceEEEec--------------------------------
Confidence                 2221     11222334444554   68999999999999984                                


Q ss_pred             ccccccccCCCCCCCCCCCCCcccCCCccEEEEEeeCCCCcHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhCCCCCCCC
Q 000387         1370 HSDMVALDDSASPKCSHTSSDNIKAATSVRLDISFKSPSHTGLQTTDLVKELTEQFPASTPLALVLKQFLADRSLDQSYS 1449 (1588)
Q Consensus      1370 ~sDi~~sedS~sp~C~~~~~ds~D~~tGIsVDISFnnpSh~GLrnSeLIreyieqyPrLRPLVLVLK~WLKqRGLNDpyt 1449 (1588)
                                              ...+++|||+|++  ..|+.++++++.|...+|++|||+++||+||++|.||+++.
T Consensus       164 ------------------------~~s~l~~Disfn~--~~~~~~akl~~~~~~~~P~lrpLvliIKhwl~~R~ln~~~~  217 (482)
T COG5260         164 ------------------------PQSGLHCDISFNN--TNGIVNAKLIRSYLKEDPRLRPLVLIIKHWLKRRALNDVAT  217 (482)
T ss_pred             ------------------------CccceEEEeecCc--hhHHHHHHHHHHHHhcCcccchHHHHHHHHHHHHhhccccc
Confidence                                    2478999999999  89999999999999999999999999999999999999999


Q ss_pred             CCcchHHHHHHHHHHHhccCc---C----CCC-----CCCcHHHHHHHHHHHhccCCCCCCceEEeeCCccccc-ccCCC
Q 000387         1450 GGLSSYCLMLLITRFLQHEHH---L----GRP-----INQNYGRLLMDFLYFFGNVFDPRQMRISVQGSGVYIK-RERGY 1516 (1588)
Q Consensus      1450 GGLSSYALVLMVIaFLQ~~p~---L----GRP-----iNqnLGeLLLdFF~FYG~eFDy~ttgISIr~gGiy~k-KErG~ 1516 (1588)
                      |||+||++++||+.|||+++.   .    ..+     .-.+||.||++||+|||..|+|...+|+++.++.|.+ .+.||
T Consensus       218 GtL~sy~i~cmV~sfLq~~~~~~~~~~~~~~~l~~~~~~~~lgvLf~dFf~~yG~~f~Y~~~~~si~~g~~~~~K~e~g~  297 (482)
T COG5260         218 GTLSSYTISCMVLSFLQMHPPFLFFDNGLLSPLKYNKNIDNLGVLFDDFFELYGKSFNYSLVVLSINSGDFYLPKYEKGW  297 (482)
T ss_pred             CcchhhhhHHHHHHHHHhCCccccccccccchhhccccccccchHHHHHHHHhccccChhheEEEecCCceeeehhhccc
Confidence            999999999999999999862   1    111     2368999999999999999999999999998866654 45555


Q ss_pred             C---C-CCeEEeCCC-CCCCccccCcccHHHHHHHHHHHHHHHHHHhhhcCC
Q 000387         1517 S---I-DPIHIDDPR-FPTNNVGRNCFRIHQCIKAFSDAYSILESELTSLTP 1563 (1588)
Q Consensus      1517 s---~-spL~IEDPf-dpsNNVGRnsfrI~qIqkaFarAyeiLs~~L~~l~s 1563 (1588)
                      -   . ..|+||||. +.++++++.++++..|+.+|++|+++|.+.+..+.+
T Consensus       298 ~~~~~p~~LsiqdP~td~n~~~~a~s~~ik~i~~~F~~aF~lls~~~~tl~~  349 (482)
T COG5260         298 LKPSKPNSLSIQDPGTDRNNDISAVSFNIKDIKAAFIRAFELLSNKLFTLTS  349 (482)
T ss_pred             ccccCCCcEeecCCCCCcccccccccchHHHHHHHHHHHHHHHhhhcchhhh
Confidence            3   2 679999999 999999999999999999999999999998876655

>KOG1906 consensus DNA polymerase sigma [Replication, recombination and repair] Back     alignment and domain information
>PTZ00418 Poly(A) polymerase; Provisional Back     alignment and domain information
>KOG2277 consensus S-M checkpoint control protein CID1 and related nucleotidyltransferases [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>cd05402 NT_PAP_TUTase Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases Back     alignment and domain information
>KOG2245 consensus Poly(A) polymerase and related nucleotidyltransferases [RNA processing and modification] Back     alignment and domain information
>COG5186 PAP1 Poly(A) polymerase [RNA processing and modification] Back     alignment and domain information
>TIGR03671 cca_archaeal CCA-adding enzyme Back     alignment and domain information
>PRK13300 tRNA CCA-pyrophosphorylase; Provisional Back     alignment and domain information
>PF04928 PAP_central: Poly(A) polymerase central domain; InterPro: IPR007012 In eukaryotes, polyadenylation of pre-mRNA plays an essential role in the initiation step of protein synthesis, as well as in the export and stability of mRNAs Back     alignment and domain information
>PF03828 PAP_assoc: Cid1 family poly A polymerase; InterPro: IPR002058 These PAP/25A associated domains are found in uncharacterised eukaryotic proteins, a number of which are described as 'topoisomerase 1-related' though they appear to have little or no homology to topoisomerase 1 Back     alignment and domain information
>COG1746 CCA1 tRNA nucleotidyltransferase (CCA-adding enzyme) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1906 consensus DNA polymerase sigma [Replication, recombination and repair] Back     alignment and domain information
>PF01909 NTP_transf_2: Nucleotidyltransferase domain A subset of this Pfam family; InterPro: IPR002934 A small region that overlaps with a nuclear localization signal and binds to the RNA primer contains three aspartates that are essential for catalysis Back     alignment and domain information
>cd05397 NT_Pol-beta-like Nucleotidyltransferase (NT) domain of DNA polymerase beta and similar proteins Back     alignment and domain information
>PF09249 tRNA_NucTransf2: tRNA nucleotidyltransferase, second domain; InterPro: IPR015329 This domain adopts a structure consisting of a five helical bundle core Back     alignment and domain information
>cd05403 NT_KNTase_like Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins Back     alignment and domain information
>PF10421 OAS1_C: 2'-5'-oligoadenylate synthetase 1, domain 2, C-terminus ; InterPro: IPR018952 This is the largely alpha-helical, C-terminal half of 2'-5'-oligoadenylate synthetase 1, being described as domain 2 of the enzyme and homologous to a tandem ubiquitin repeat Back     alignment and domain information
>PF03813 Nrap: Nrap protein; InterPro: IPR005554 Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human Back     alignment and domain information
>cd05400 NT_2-5OAS_ClassI-CCAase Nucleotidyltransferase (NT) domain of 2'5'-oligoadenylate (2-5A)synthetase (2-5OAS) and class I CCA-adding enzyme Back     alignment and domain information
>smart00572 DZF domain in DSRM or ZnF_C2H2 domain containing proteins Back     alignment and domain information
>COG1708 Predicted nucleotidyltransferases [General function prediction only] Back     alignment and domain information
>COG1669 Predicted nucleotidyltransferases [General function prediction only] Back     alignment and domain information
>PRK13746 aminoglycoside resistance protein; Provisional Back     alignment and domain information
>PF07528 DZF: DZF domain; InterPro: IPR006561 This domain is found in proteins containing the double-stranded RNA-binding motif, DSRM (IPR001159 from INTERPRO), or the zinc finger domain C2H2 (IPR007087 from INTERPRO) Back     alignment and domain information
>KOG2054 consensus Nucleolar RNA-associated protein (NRAP) [Function unknown] Back     alignment and domain information
>PF14792 DNA_pol_B_palm: DNA polymerase beta palm ; PDB: 1RZT_A 3PML_A 2PFN_A 3HX0_K 3HWT_A 2GWS_E 2BCQ_A 3UPQ_A 2BCS_A 3UQ2_A Back     alignment and domain information
>KOG3793 consensus Transcription factor NFAT, subunit NF45 [Transcription] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1588
3nyb_A323 Structure And Function Of The Polymerase Core Of Tr 2e-15
2ikf_A353 Terminal Uridylyl Transferase 4 From Trypanosoma Br 8e-04
>pdb|3NYB|A Chain A, Structure And Function Of The Polymerase Core Of Tramp, A Rna Surveillance Complex Length = 323 Back     alignment and structure 
Iteration: 1

 Score = 82.4 bits (202), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 87/343 (25%), Positives = 132/343 (38%), Gaps = 88/343 (25%)
Query: 1236 NWAVKRVTRSLQVLWPRSRTNIFGSNATGLSLPSSDVDLVVCLPPVRNLEPIKEAGILEG 1295
            N  +  +  +++ LWP +  ++FGS +T L LP SD+D VV            E G  E 
Sbjct: 43   NQTISTIREAVKQLWPDADLHVFGSYSTDLYLPGSDIDCVVT----------SELGGKES 92
Query: 1296 RNGIKETCLQHAARYLANQEWVKSDSLKTVENTAIPIIMLVVEVPHDLIASAASSVQSPK 1355
            RN +         + LA +       ++ V    +PII  V   PH  I  A        
Sbjct: 93   RNNLYSLASHLKKKNLATE-------VEVVAKARVPIIKFV--EPHSGIHIA-------- 135
Query: 1356 EDAAHTTLKHDNHVHSDMVALDDSASPKCSHTSSDNIKAATSVRLDISFKSPSHTGLQTT 1415
                                         S   ++ I+AA  +R                
Sbjct: 136  ----------------------------VSFERTNGIEAAKLIR---------------- 151
Query: 1416 DLVKELTEQFPASTPLALVLKQFLADRSLDQSYSGGLSSYCLMLLITRFLQ-HEHHLGRP 1474
                E  +  P    L L++KQFL  R L+  ++GGL  + ++ L+  FL  H   +   
Sbjct: 152  ----EWLDDTPGLRELVLIVKQFLHARRLNNVHTGGLGGFSIICLVFSFLHMHPRIITNE 207
Query: 1475 IN--QNYGRLLMDFLYFFGNVFDPRQMRI-SVQGSGVYIKRERGYSIDPIH------IDD 1525
            I+   N G LL++F   +G  F    + + S  G  VY  +    +I PI       I D
Sbjct: 208  IDPKDNLGVLLIEFFELYGKNFGYDDVALGSSDGYPVYFPKSTWSAIQPIKNPFSLAIQD 267
Query: 1526 PRFPTNNVGRNCFRIHQCIKAFSDAYSILES---ELTSLTPAD 1565
            P   +NN+ R  F I    KAF+ A+ +L +   EL S T  D
Sbjct: 268  PGDESNNISRGSFNIRDIKKAFAGAFDLLTNRCFELHSATFKD 310
>pdb|2IKF|A Chain A, Terminal Uridylyl Transferase 4 From Trypanosoma Brucei With Bound Utp Length = 353 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1588
3nyb_A323 Poly(A) RNA polymerase protein 2; polya RNA polyme 2e-46
4ep7_A340 Poly(A) RNA polymerase protein CID1; poly(U) polym 8e-35
4e8f_A405 Poly(A) RNA polymerase protein CID1; beta polymera 2e-31
2b4v_A468 RNA editing complex protein MP57; tbret2, TBMP57, 2e-26
2ikf_A353 RNA uridylyl transferase; tutase, nucleotidyltrans 2e-26
3pq1_A464 Poly(A) RNA polymerase; nucleotidyl transferase, R 6e-19
2hhp_A 530 Poly(A) polymerase; template-independent RNA polym 5e-17
1q79_A 514 Poly(A) polymerase alpha; mRNA processing, nucleot 2e-15
3hj4_A384 Minor editosome-associated tutase; nucleotidyltran 6e-12
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
2rff_A111 Putative nucleotidyltransferase; NP_343093.1, nucl 5e-04
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae} Length = 323 Back     alignment and structure
 Score =  169 bits (429), Expect = 2e-46
 Identities = 77/385 (20%), Positives = 132/385 (34%), Gaps = 93/385 (24%)

Query: 1209 MHSLLHEEIDSFCKQV---AAENTARKPYINWAVKRVTRSLQVLWPRSRTNIFGSNATGL 1265
            +   L  EI  F   +     E   R    N  +  +  +++ LWP +  ++FGS +T L
Sbjct: 17   ISDWLTFEIKDFVAYISPSREEIEIR----NQTISTIREAVKQLWPDADLHVFGSYSTDL 72

Query: 1266 SLPSSDVDLVVCLPPVRNLEPIKEAGILEGRNGIKETCLQHAARYLANQEWVKSDSLKTV 1325
             LP SD+D VV                 E RN +        A +L  +       ++ V
Sbjct: 73   YLPGSDIDCVVTSELGG----------KESRNNLYSL-----ASHLKKKNLATE--VEVV 115

Query: 1326 ENTAIPIIMLVVEVPHDLIASAASSVQSPKEDAAHTTLKHDNHVHSDMVALDDSASPKCS 1385
                +PI                                                  K  
Sbjct: 116  AKARVPI-------------------------------------------------IKFV 126

Query: 1386 HTSSDNIKAATSVRLDISFKSPSHTGLQTTDLVKELTEQFPASTPLALVLKQFLADRSLD 1445
                      + + + +SF+     G++   L++E  +  P    L L++KQFL  R L+
Sbjct: 127  EP-------HSGIHIAVSFER--TNGIEAAKLIREWLDDTPGLRELVLIVKQFLHARRLN 177

Query: 1446 QSYSGGLSSYCLMLLITRFLQHEHHL---GRPINQNYGRLLMDFLYFFGNVFDPRQMRIS 1502
              ++GGL  + ++ L+  FL     +         N G LL++F   +G  F    + + 
Sbjct: 178  NVHTGGLGGFSIICLVFSFLHMHPRIITNEIDPKDNLGVLLIEFFELYGKNFGYDDVALG 237

Query: 1503 VQGSGVYIKRERGYSI-------DPIHIDDPRFPTNNVGRNCFRIHQCIKAFSDAYSILE 1555
                      +  +S          + I DP   +NN+ R  F I    KAF+ A+ +L 
Sbjct: 238  SSDGYPVYFPKSTWSAIQPIKNPFSLAIQDPGDESNNISRGSFNIRDIKKAFAGAFDLLT 297

Query: 1556 SELTSLTPADDQCSRPPYRLLPKII 1580
            +    L  A  +  R    +L  +I
Sbjct: 298  NRCFELHSATFK-DRLGKSILGNVI 321
>4ep7_A Poly(A) RNA polymerase protein CID1; poly(U) polymerase, UTP binding, transferase; HET: UTP; 2.28A {Schizosaccharomyces pombe} Length = 340 Back     alignment and structure
>4e8f_A Poly(A) RNA polymerase protein CID1; beta polymerase-like nucleotidyl transferase, terminal uridi transferase, UTP, cytoplasmic; 2.60A {Schizosaccharomyces pombe 972h-} PDB: 4e7x_A* 4e80_A Length = 405 Back     alignment and structure
>2b4v_A RNA editing complex protein MP57; tbret2, TBMP57, terminal uridylyl transferase, editosome, transferase/RNA binding protein complex; 1.80A {Trypanosoma brucei} SCOP: a.160.1.4 d.218.1.10 PDB: 2b51_A* 2b56_A* Length = 468 Back     alignment and structure
>2ikf_A RNA uridylyl transferase; tutase, nucleotidyltransferase, UTP-binding, RNA editing; HET: UTP; 2.00A {Trypanosoma brucei} PDB: 2nom_A* 2q0c_A* 2q0d_A* 2q0e_A* 2q0f_A* 2q0g_A* Length = 353 Back     alignment and structure
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens} Length = 464 Back     alignment and structure
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A* Length = 530 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2rff_A Putative nucleotidyltransferase; NP_343093.1, nucleotidyltransferase domain, structural genomics; HET: MSE; 1.40A {Sulfolobus solfataricus P2} Length = 111 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1588
d2b4va1183 a.160.1.4 (A:289-471) RNA editing terminal uridyl 3e-20
d1q79a2196 d.218.1.3 (A:19-214) Poly(A) polymerase, PAP, N-te 4e-07
d2q66a2197 d.218.1.3 (A:5-201) Poly(A) polymerase, PAP, N-ter 5e-05
d1no5a_100 d.218.1.5 (A:) Hypothetical protein HI0073 {Haemop 7e-04
>d2b4va1 a.160.1.4 (A:289-471) RNA editing terminal uridyl transferase 2, TUTase 2, RET2 {Trypanosoma brucei [TaxId: 5691]} Length = 183 Back     information, alignment and structure

class: All alpha proteins
fold: PAP/OAS1 substrate-binding domain
superfamily: PAP/OAS1 substrate-binding domain
family: RNA editing terminal uridyl transferase 2, RET2, domain 2
domain: RNA editing terminal uridyl transferase 2, TUTase 2, RET2
species: Trypanosoma brucei [TaxId: 5691]

 Score = 88.0 bits (217), Expect = 3e-20
 Identities = 29/179 (16%), Positives = 53/179 (29%), Gaps = 38/179 (21%)

Query: 1426 PASTPLALVLKQFLADRSLDQSYSGGLSSYCLMLLITRFLQHEHH--------------- 1470
             A+   A+ +K +    ++       L+SY + ++   +L                    
Sbjct: 2    VAARHTAMAVKAWGKATNVGAGSGAMLTSYAVTVMFIYYLLVTRQVLWVDPWSLPHPAHL 61

Query: 1471 --------LGRPINQNYGRLLMDFLYFFGNVFDPRQMRISVQGSGVYIKRE--------- 1513
                    L        GRLL  F  F+ + FD  +  +S+  +    + +         
Sbjct: 62   PRYPDFSPLYDCDPTELGRLLHGFFIFYAHHFDYEREVVSLNRNRRSYRSDIGWNFPQNK 121

Query: 1514 RGYSIDPIHIDDPRFPTNNVGRNCFR------IHQCIKAFSDAYSILESELTSLTPADD 1566
            +G       I+DP       G N  R           + F  A   +E  L +  P   
Sbjct: 122  KGTFSYNFCIEDPYEDVGTGGLNLVRHLHPAKFQLVKQEFLRAAQCMERFLPTNAPEKS 180
>d1q79a2 d.218.1.3 (A:19-214) Poly(A) polymerase, PAP, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]} Length = 196 Back     information, alignment and structure
>d2q66a2 d.218.1.3 (A:5-201) Poly(A) polymerase, PAP, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 197 Back     information, alignment and structure
>d1no5a_ d.218.1.5 (A:) Hypothetical protein HI0073 {Haemophilus influenzae [TaxId: 727]} Length = 100 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1588
d2b4va1183 RNA editing terminal uridyl transferase 2, TUTase 99.95
d2q66a2197 Poly(A) polymerase, PAP, N-terminal domain {Baker' 99.77
d1q79a2196 Poly(A) polymerase, PAP, N-terminal domain {Cow (B 99.72
d2q66a1150 Poly(A) polymerase, PAP, middle domain {Baker's ye 99.31
d1q79a1150 Poly(A) polymerase, PAP, middle domain {Cow (Bos t 99.26
d2b4va2259 RNA editing terminal uridyl transferase 2, TUTase 99.14
d1no5a_100 Hypothetical protein HI0073 {Haemophilus influenza 98.15
d1ylqa190 Putative nucleotidyltransferase AF0614 {Archaeon A 97.34
d1r89a2142 tRNA nucleotidyltransferase, N-terminal domain {Ar 97.25
d1r89a1115 tRNA nucleotidyltransferase, second domain {Archae 97.13
d1px5a1146 2'-5'-oligoadenylate synthetase 1, OAS1, second do 96.78
d1px5a2200 2'-5'-oligoadenylate synthetase 1, OAS1, N-termina 96.23
d1wota_98 Unnamed putative nucleotidyltransferase {Thermus t 96.16
d1knya2125 Kanamycin nucleotidyltransferase (KNTase), N-termi 95.54
d2bcqa3190 DNA polymerase lambda {Human (Homo sapiens) [TaxId 94.43
d1jmsa4208 Terminal deoxynucleotidyl transferase {Mouse (Mus 92.77
d2fmpa3187 DNA polymerase beta, catalytic (31 kD) fragment {H 80.88
>d2b4va1 a.160.1.4 (A:289-471) RNA editing terminal uridyl transferase 2, TUTase 2, RET2 {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
class: All alpha proteins
fold: PAP/OAS1 substrate-binding domain
superfamily: PAP/OAS1 substrate-binding domain
family: RNA editing terminal uridyl transferase 2, RET2, domain 2
domain: RNA editing terminal uridyl transferase 2, TUTase 2, RET2
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.95  E-value=2e-28  Score=205.07  Aligned_cols=134  Identities=19%  Similarity=0.259  Sum_probs=111.0

Q ss_pred             CCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC-----------------------CCCCCCCHHHH
Q ss_conf             9707999999999982899877789852578999999998105768-----------------------99888849999
Q 000387         1426 PASTPLALVLKQFLADRSLDQSYSGGLSSYCLMLLITRFLQHEHHL-----------------------GRPINQNYGRL 1482 (1588)
Q Consensus      1426 PrLRPLVLVLK~WLKqRGLNDsysGGLSSYALvLMVIaFLQ~~p~L-----------------------GRPiN~sLGeL 1482 (1588)
                      |++|+|+++||+|+|.++|++++.||||||+|++|||+|||.....                       ....+.+||+|
T Consensus         2 P~~R~l~~~vK~Wak~~~i~~~~~G~lsSYal~lmvi~fLQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~L   81 (183)
T d2b4va1           2 VAARHTAMAVKAWGKATNVGAGSGAMLTSYAVTVMFIYYLLVTRQVLWVDPWSLPHPAHLPRYPDFSPLYDCDPTELGRL   81 (183)
T ss_dssp             TTHHHHHHHHHHHHHTCC-----CCSSCHHHHHHHHHHHHHHTTSSCCCCGGGSCCGGGSCSSCCCCCCCCCCHHHHHHH
T ss_pred             CCEEEHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf             64222999999999986999756788229999999999998448889898788513202344445555467887779999


Q ss_pred             HHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCC---------CCCCEEEECCCCCCCCCCCCC------CCHHHHHHHH
Q ss_conf             9999998515889999169963794221136889---------999949839999999655472------1299999999
Q 000387         1483 LMDFLYFFGNVFDPRQMRISVQGSGVYIKRERGY---------SIDPIHIDDPRFPTNNVGRNC------FRIHQCIKAF 1547 (1588)
Q Consensus      1483 LLdFLkFYGneFDY~k~vISIr~gGiy~KKerG~---------s~~pL~IEDPlDpsNNIGRss------frI~qIqkaF 1547 (1588)
                      |++||+|||.+|||.+.+||++.++.+.+.+..|         ...+|+|+||+++.+|+|+|+      .++..|+.+|
T Consensus        82 l~~FF~~Y~~~fd~~~~~Isi~~g~~~~k~~~~~~~~~~~~~~~~~~l~IeDPfd~~~~~~~Nv~r~v~~~~~~~I~~~f  161 (183)
T d2b4va1          82 LHGFFIFYAHHFDYEREVVSLNRNRRSYRSDIGWNFPQNKKGTFSYNFCIEDPYEDVGTGGLNLVRHLHPAKFQLVKQEF  161 (183)
T ss_dssp             HHHHHHHHHHSSCTTTEEBCSSSSSCEEHHHHTCCCGGGEETTEECSSCBBCSSTTTTTTCCBTTTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCHHHCEEEECCCCCCCHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHCCHHHHHHHHHHH
T ss_conf             99999985002588776364104874320433202444677777756578688766554442134215789999999999


Q ss_pred             HHHHHHHHHHHH
Q ss_conf             999999999763
Q 000387         1548 SDAYSILESELT 1559 (1588)
Q Consensus      1548 arAyeiLs~eL~ 1559 (1588)
                      ++|++.|++.+.
T Consensus       162 ~~a~~~l~~~~~  173 (183)
T d2b4va1         162 LRAAQCMERFLP  173 (183)
T ss_dssp             HHHHHHHHHCCT
T ss_pred             HHHHHHHHHHHH
T ss_conf             999999998874
>d2q66a2 d.218.1.3 (A:5-201) Poly(A) polymerase, PAP, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q79a2 d.218.1.3 (A:19-214) Poly(A) polymerase, PAP, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2q66a1 a.160.1.1 (A:202-351) Poly(A) polymerase, PAP, middle domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q79a1 a.160.1.1 (A:215-364) Poly(A) polymerase, PAP, middle domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2b4va2 d.218.1.10 (A:30-288) RNA editing terminal uridyl transferase 2, TUTase 2, RET2 {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1no5a_ d.218.1.5 (A:) Hypothetical protein HI0073 {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1ylqa1 d.218.1.5 (A:1-90) Putative nucleotidyltransferase AF0614 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1r89a2 d.218.1.7 (A:1-142) tRNA nucleotidyltransferase, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1r89a1 a.160.1.3 (A:143-257) tRNA nucleotidyltransferase, second domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1px5a1 a.160.1.2 (A:201-346) 2'-5'-oligoadenylate synthetase 1, OAS1, second domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1px5a2 d.218.1.6 (A:1-200) 2'-5'-oligoadenylate synthetase 1, OAS1, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1wota_ d.218.1.5 (A:) Unnamed putative nucleotidyltransferase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1knya2 d.218.1.1 (A:1-125) Kanamycin nucleotidyltransferase (KNTase), N-terminal domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d2bcqa3 d.218.1.2 (A:386-575) DNA polymerase lambda {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jmsa4 d.218.1.2 (A:303-510) Terminal deoxynucleotidyl transferase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2fmpa3 d.218.1.2 (A:149-335) DNA polymerase beta, catalytic (31 kD) fragment {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure