Citrus Sinensis ID: 000406
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1560 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LJX0 | 1252 | ABC transporter B family | yes | no | 0.792 | 0.987 | 0.429 | 0.0 | |
| Q8LPK2 | 1273 | ABC transporter B family | no | no | 0.782 | 0.959 | 0.419 | 0.0 | |
| Q9ZR72 | 1286 | ABC transporter B family | no | no | 0.780 | 0.946 | 0.415 | 0.0 | |
| Q9FWX7 | 1278 | ABC transporter B family | no | no | 0.782 | 0.955 | 0.419 | 0.0 | |
| Q9SGY1 | 1227 | ABC transporter B family | no | no | 0.775 | 0.985 | 0.408 | 0.0 | |
| Q9SYI3 | 1230 | ABC transporter B family | no | no | 0.777 | 0.986 | 0.416 | 0.0 | |
| Q9FWX8 | 1273 | ABC transporter B family | no | no | 0.785 | 0.962 | 0.414 | 0.0 | |
| Q9C7F8 | 1245 | ABC transporter B family | no | no | 0.768 | 0.963 | 0.414 | 0.0 | |
| Q9M1Q9 | 1296 | ABC transporter B family | no | no | 0.786 | 0.946 | 0.416 | 0.0 | |
| O80725 | 1286 | ABC transporter B family | no | no | 0.776 | 0.942 | 0.418 | 0.0 |
| >sp|Q9LJX0|AB19B_ARATH ABC transporter B family member 19 OS=Arabidopsis thaliana GN=ABCB19 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 989 bits (2557), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 538/1253 (42%), Positives = 768/1253 (61%), Gaps = 17/1253 (1%)
Query: 310 NNDPELVSPYNEDDAEVAKPVGLFSLFKYSTKLDMILVLLGCIGALINGGALPWYSYFFG 369
D + V E E + P F LF ++ K D +L+ +G +GA+++G ++P + FG
Sbjct: 6 TTDAKTVPAEAEKKKEQSLP--FFKLFSFADKFDYLLMFVGSLGAIVHGSSMPVFFLLFG 63
Query: 370 NFVNKIANESSDPDKTQMMKDAEKICLLMTVLAAIVMMGAYLEITCWRLVGERSAQRIRT 429
VN D QM+ + + L L +V +Y EI CW GER +R
Sbjct: 64 QMVNGFGKNQMDLH--QMVHEVSRYSLYFVYLGLVVCFSSYAEIACWMYSGERQVAALRK 121
Query: 430 KYLRAVLRQDIAFFDTEVSTSDIMHGISSDIAQIQEVMGEKVAHFAHNIFTFICGYTVGF 489
KYL AVL+QD+ FFDT+ T DI+ +S+D +Q+ + EKV +F H + TF+ G VGF
Sbjct: 122 KYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGF 181
Query: 490 LRSWKVSLVVLSVTPLMMFCGMAYKAVYVGLTSKEEASYRRAGSVAEQAISSIRTVFSFV 549
+ +WK++L+ ++V P + F G Y G+TSK SY AG +AEQAI+ +RTV+S+V
Sbjct: 182 VSAWKLALLSVAVIPGIAFAGGLYAYTLTGITSKSRESYANAGVIAEQAIAQVRTVYSYV 241
Query: 550 AEDHFAVRYAGLLADSIPFGAKLGFAKGAGMGVIYLVTYATWALAFWYGSILVARKELSG 609
E Y+ + ++ G K G AKG G+G Y + +WAL FWY + + + G
Sbjct: 242 GESKALNAYSDAIQYTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQTDG 301
Query: 610 GAAIACFFGVNVGGRGLALSLSYFAQFAQGTVAATRVFEIIDRVPEIDPYNSEGRKLSSV 669
G A F VGG L S S F++G A ++ EII++ P I +G+ L V
Sbjct: 302 GKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIINQRPTIIQDPLDGKCLDQV 361
Query: 670 SGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTK 729
G IEFK VTF+YPSRP+ +I R+ N+ PS KT+A+VG SG GKSTV +LIERFYDP
Sbjct: 362 HGNIEFKDVTFSYPSRPDVMIFRNFNIFFPSGKTVAVVGGSGSGKSTVVSLIERFYDPNS 421
Query: 730 GLITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAAS 789
G I LDG ++K+LQ+K+LR QIG+V QEP LFAT+ILEN+L GK +ATM E AA AA+
Sbjct: 422 GQILLDGVEIKTLQLKFLREQIGLVNQEPALFATTILENILYGKPDATMVEVEAAASAAN 481
Query: 790 AHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESI 849
AHSFI+ LP GYDTQVG+RG QLSGGQKQRIA+ARAM+KDP+ILLLDE TSALD+ SESI
Sbjct: 482 AHSFITLLPKGYDTQVGERGVQLSGGQKQRIAIARAMLKDPKILLLDEATSALDASSESI 541
Query: 850 VQQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLERGGAYHDLVK- 908
VQ+A+D++ VGRTT+V+AHRL T++N ++I V+ QG VVE G H +L+ + GAY L++
Sbjct: 542 VQEALDRVMVGRTTVVVAHRLCTIRNVDSIAVIQQGQVVETGTHEELIAKSGAYASLIRF 601
Query: 909 ---LASEAVSQPQSKQKDAKRGIEFSIYEKSVIEVSRSRYANEVSKSKYFKSMQAEIQTV 965
+ + S P +++ + R + S+ KS+ RS +S S Y I+ +
Sbjct: 602 QEMVGTRDFSNPSTRRTRSTR-LSHSLSTKSL--SLRSGSLRNLSYS-YSTGADGRIEMI 657
Query: 966 E--EEQQKPRPRKFQLSEIWKLQRPEFAMIIFGFILGMHAGAILSIFPLILGQALQVYFD 1023
E +K R + + KL PE+ I G + + +G I F +++ ++V++
Sbjct: 658 SNAETDRKTRAPENYFYRLLKLNSPEWPYSIMGAVGSILSGFIGPTFAIVMSNMIEVFYY 717
Query: 1024 DTASTLRRDVRYLSLALVGLGFGCIIFMTGQQGFCGWAGTKLTMRVRELLFRSILKQEPG 1083
++ R + +G G + Q F G LT RVR ++ +IL+ E G
Sbjct: 718 TDYDSMERKTKEYVFIYIGAGLYAVGAYLIQHYFFSIMGENLTTRVRRMMLSAILRNEVG 777
Query: 1084 WFDFEENSTGVLVSRLSIDSISFRSVLGDRFSVLLMGLSSAAVGLGVSLVLNWRLTLVAA 1143
WFD +E+++ ++ +RL+ D+ +S + +R SV+L ++S V+ ++ WR++L+
Sbjct: 778 WFDEDEHNSSLIAARLATDAADVKSAIAERISVILQNMTSLLTSFIVAFIVEWRVSLLIL 837
Query: 1144 ALTPFTLGASYLSLIINVGPKIDNS-SYAKASSIASGAVSNIRTVTTFSAQEQIINSFDK 1202
P + A++ + G D + ++AK S IA VSNIRTV F+AQ +I++ F
Sbjct: 838 GTFPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQSKILSLFCH 897
Query: 1203 ALSEPKKKSVKRSQILGLTLGFSQGAMYVAYTFTLWFGAYLVKQGHASFGVVYKIFLILV 1262
L P+K+S+ RSQ G G SQ A+Y + LW+GA+LV +G ++F V K+F++LV
Sbjct: 898 ELRVPQKRSLYRSQTSGFLFGLSQLALYGSEALILWYGAHLVSKGVSTFSKVIKVFVVLV 957
Query: 1263 LSSFSVGQLAGLAPDTSMAATAIPAVLQITKRKPLIDNVKGRKLERSKPLG-IELKMVTF 1321
+++ SV + LAP+ A+ +V + R+ ID G IE + V F
Sbjct: 958 ITANSVAETVSLAPEIIRGGEAVGSVFSVLDRQTRIDPDDADADPVETIRGDIEFRHVDF 1017
Query: 1322 TYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLR 1381
YPSRP+V V +DF L+++ G ALVG SGSGKS+VI +I+RFYDP GKVMI+G D+R
Sbjct: 1018 AYPSRPDVMVFRDFNLRIRAGHSQALVGASGSGKSSVIAMIERFYDPLAGKVMIDGKDIR 1077
Query: 1382 EINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQG 1441
+N+K LR + LV QEPALFA TI DNIA G A+ +E+ +AA A H FIS LP+G
Sbjct: 1078 RLNLKSLRLKIGLVQQEPALFAATIFDNIAYGKDGATESEVIDAARAANAHGFISGLPEG 1137
Query: 1442 YETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKR 1501
Y+T VGE GVQLSGGQKQRIAIARA+LK VLLLDEA+SALD ESE +Q+AL ++ +
Sbjct: 1138 YKTPVGERGVQLSGGQKQRIAIARAVLKNPTVLLLDEATSALDAESECVLQEALERLMRG 1197
Query: 1502 ATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETLLASHLNGVYASLVRAET 1554
TT+VVAHRLSTIR + I V++DG +VE GSH L+ S G Y+ L++ +T
Sbjct: 1198 RTTVVVAHRLSTIRGVDCIGVIQDGRIVEQGSHSELV-SRPEGAYSRLLQLQT 1249
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Auxin efflux transporter that acts as a negative regulator of light signaling to promote hypocotyl elongation. Mediates the accumulation of chlorophyll and anthocyanin, as well as the expression of genes in response to light. Participates in auxin efflux and thus regulates the polar auxin basipetal transport (from auxin-producing leaves to auxin-sensitive tissues, and from root tips to root elongating zone). Involved in divers auxin-mediated responses including gravitropism, phototropism and lateral root formation. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8LPK2|AB2B_ARATH ABC transporter B family member 2 OS=Arabidopsis thaliana GN=ABCB2 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 966 bits (2496), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 521/1241 (41%), Positives = 761/1241 (61%), Gaps = 20/1241 (1%)
Query: 318 PYNEDDAEVAKP-VGLFSLFKYSTKLDMILVLLGCIGALINGGALPWYSYFFGNFVNKIA 376
P E + E+ +P V L LF ++ D +L+ LG +GA I+G ++P + FFG +N I
Sbjct: 47 PAPEKEKEMTQPKVSLLKLFSFADFYDCVLMTLGSVGACIHGASVPIFFIFFGKLINIIG 106
Query: 377 NESSDPDKTQMMKDAEKICLLMTVLAAIVMMGAYLEITCWRLVGERSAQRIRTKYLRAVL 436
P Q K L L+ ++ ++LE+ CW GER A ++R YLR++L
Sbjct: 107 LAYLFPK--QASHRVAKYSLDFVYLSVAILFSSWLEVACWMHTGERQAAKMRRAYLRSML 164
Query: 437 RQDIAFFDTEVSTSDIMHGISSDIAQIQEVMGEKVAHFAHNIFTFICGYTVGFLRSWKVS 496
QDI+ FDTE ST +++ I+SDI +Q+ + EKV +F H I FI G+ +GF W++S
Sbjct: 165 SQDISLFDTEASTGEVISAITSDILVVQDALSEKVGNFLHYISRFIAGFAIGFTSVWQIS 224
Query: 497 LVVLSVTPLMMFCGMAYKAVYVGLTSKEEASYRRAGSVAEQAISSIRTVFSFVAEDHFAV 556
LV LS+ PL+ G Y V +GL ++ SY +AG +AE+ I ++RTV +F E+
Sbjct: 225 LVTLSIVPLIALAGGIYAFVAIGLIARVRKSYIKAGEIAEEVIGNVRTVQAFTGEERAVR 284
Query: 557 RYAGLLADSIPFGAKLGFAKGAGMGVIYLVTYATWALAFWYGSILVARKELSGGAAIACF 616
Y L ++ +G K G KG G+G ++ V + +WAL W+ S++V + GG +
Sbjct: 285 LYREALENTYKYGRKAGLTKGLGLGSMHCVLFLSWALLVWFTSVVVHKDIADGGKSFTTM 344
Query: 617 FGVNVGGRGLALSLSYFAQFAQGTVAATRVFEIIDRVPEIDPYNSEGRKLSSVSGKIEFK 676
V + G L + + F + AA +F++I+R GRKL V G I+FK
Sbjct: 345 LNVVIAGLSLGQAAPDISAFVRAKAAAYPIFKMIERNTVTKTSAKSGRKLGKVDGHIQFK 404
Query: 677 GVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDG 736
TF+YPSRP+ VI LNL IP+ K +ALVG SG GKSTV +LIERFY+P G + LDG
Sbjct: 405 DATFSYPSRPDVVIFDRLNLAIPAGKIVALVGGSGSGKSTVISLIERFYEPISGAVLLDG 464
Query: 737 HDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISE 796
+++ L +KWLR QIG+V QEP LFAT+I EN+L GK++AT +E A K + A SFI+
Sbjct: 465 NNISELDIKWLRGQIGLVNQEPALFATTIRENILYGKDDATAEEITRAAKLSEAISFINN 524
Query: 797 LPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDK 856
LP G++TQVG+RG QLSGGQKQRIA++RA++K+P ILLLDE TSALD+ESE VQ+A+D+
Sbjct: 525 LPEGFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEALDR 584
Query: 857 ISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLER-GGAYHDLVKLASEAVS 915
+ VGRTT+V+AHRL+TV+NA+ I V+ +G +VE GNH L+ GAY L++L A
Sbjct: 585 VMVGRTTVVVAHRLSTVRNADIIAVVHEGKIVEFGNHENLISNPDGAYSSLLRLQETA-- 642
Query: 916 QPQSKQKDAKRGIEFSIYEKSVIEVSRSRYANEVSKSKYFKSMQAEIQTVEEEQQKPRPR 975
S Q++ +++ +Y+ E+S+++ + E T + +
Sbjct: 643 ---SLQRNPS-------LNRTLSRPHSIKYSRELSRTRSSFCSERESVTRPDGADPSKKV 692
Query: 976 KFQLSEIWKLQRPEFAMIIFGFILGMHAGAILSIFPLILGQALQVYFDDTASTLRRDVRY 1035
K + ++ + RP++ + G I AG+ + +F L + QAL Y+ T +++++
Sbjct: 693 KVTVGRLYSMIRPDWMYGVCGTICAFIAGSQMPLFALGVSQALVSYYSGWDET-QKEIKK 751
Query: 1036 LSLALVGLGFGCIIFMTGQQGFCGWAGTKLTMRVRELLFRSILKQEPGWFDFEENSTGVL 1095
+++ +I T + G G +LT+RVRE +FR+ILK E GWFD +N++ +L
Sbjct: 752 IAILFCCASVITLIVYTIEHICFGTMGERLTLRVRENMFRAILKNEIGWFDEVDNTSSML 811
Query: 1096 VSRLSIDSISFRSVLGDRFSVLLMGLSSAAVGLGVSLVLNWRLTLVAAALTPFTLGASYL 1155
SRL D+ ++++ DR ++LL L ++ +LNWRLTLV A P +
Sbjct: 812 ASRLESDATLLKTIVVDRSTILLQNLGLVVTSFIIAFILNWRLTLVVLATYPLVISGHIS 871
Query: 1156 SLIINVGPKID-NSSYAKASSIASGAVSNIRTVTTFSAQEQIINSFDKALSEPKKKSVKR 1214
+ G D N +Y KA+ +A +VSNIRTV F A+E+I+ + + L EP K S +R
Sbjct: 872 EKLFMQGYGGDLNKAYLKANMLAGESVSNIRTVAAFCAEEKILELYSRELLEPSKSSFRR 931
Query: 1215 SQILGLTLGFSQGAMYVAYTFTLWFGAYLVKQGHASFGVVYKIFLILVLSSFSVGQLAGL 1274
QI GL G SQ ++ +Y LW+G+ L+ +G A F V K F++L++++ ++G+ L
Sbjct: 932 GQIAGLFYGVSQFFIFSSYGLALWYGSTLMDKGLAGFKSVMKTFMVLIVTALAMGETLAL 991
Query: 1275 APDTSMAATAIPAVLQITKRKPLIDNVKGRKLERSKPLGIELKMVTFTYPSRPEVTVLKD 1334
APD + +V +I RK I +L + IELK V F+YPSRP+V + +D
Sbjct: 992 APDLLKGNQMVASVFEILDRKTQIVGETSEELNNVEG-TIELKGVHFSYPSRPDVVIFRD 1050
Query: 1335 FCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTAL 1394
F L V+ G +ALVG SGSGKS+VI LI RFYDP GKVMIEG D++++++K LRK L
Sbjct: 1051 FDLIVRAGKSMALVGQSGSGKSSVISLILRFYDPTAGKVMIEGKDIKKLDLKALRKHIGL 1110
Query: 1395 VGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLS 1454
V QEPALFA TI +NI GN AS +E+ E+A A H FI+SLP+GY T+VGE GVQ+S
Sbjct: 1111 VQQEPALFATTIYENILYGNEGASQSEVVESAMLANAHSFITSLPEGYSTKVGERGVQMS 1170
Query: 1455 GGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTI 1514
GGQ+QRIAIARAILK +LLLDEA+SALD+ESE+ VQ AL ++ TT+VVAHRLSTI
Sbjct: 1171 GGQRQRIAIARAILKNPAILLLDEATSALDVESERVVQQALDRLMANRTTVVVAHRLSTI 1230
Query: 1515 REANMIAVVRDGAVVEYGSHETLLASHLNGVYASLVRAETE 1555
+ A+ I+V+ G +VE GSH L+ + +G Y L+ + +
Sbjct: 1231 KNADTISVLHGGKIVEQGSHRKLVLNK-SGPYFKLISLQQQ 1270
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZR72|AB1B_ARATH ABC transporter B family member 1 OS=Arabidopsis thaliana GN=ABCB1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 966 bits (2496), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 522/1255 (41%), Positives = 770/1255 (61%), Gaps = 38/1255 (3%)
Query: 324 AEVAKPVGLFSLFKYSTKLDMILVLLGCIGALINGGALPWYSYFFGNFVNKIANESSDPD 383
AE+ + V LF+++ LD +L+ +G +GA ++G +LP + FF + VN + S++ +
Sbjct: 22 AEI-RGVAFKELFRFADGLDYVLMGIGSVGAFVHGCSLPLFLRFFADLVNSFGSNSNNVE 80
Query: 384 KTQMMKDAEKICLLMTVLAAIVMMGAYLEITCWRLVGERSAQRIRTKYLRAVLRQDIAFF 443
K MM++ K L V+ A + ++ EI+CW GER ++R KYL A L QDI FF
Sbjct: 81 K--MMEEVLKYALYFLVVGAAIWASSWAEISCWMWSGERQTTKMRIKYLEAALNQDIQFF 138
Query: 444 DTEVSTSDIMHGISSDIAQIQEVMGEKVAHFAHNIFTFICGYTVGFLRSWKVSLVVLSVT 503
DTEV TSD++ I++D +Q+ + EK+ +F H + TF+ G+ VGF W+++LV L+V
Sbjct: 139 DTEVRTSDVVFAINTDAVMVQDAISEKLGNFIHYMATFVSGFIVGFTAVWQLALVTLAVV 198
Query: 504 PLMMFCGMAYKAVYVGLTSKEEASYRRAGSVAEQAISSIRTVFSFVAEDHFAVRYAGLLA 563
PL+ G + L++K + S +AG++ EQ + IR V +FV E + Y+ L
Sbjct: 199 PLIAVIGGIHTTTLSKLSNKSQESLSQAGNIVEQTVVQIRVVMAFVGESRASQAYSSALK 258
Query: 564 DSIPFGAKLGFAKGAGMGVIYLVTYATWALAFWYGSILVARKELSGGAAIACFFGVNVGG 623
+ G K G AKG G+G Y V + +AL WYG LV +GG AIA F V +GG
Sbjct: 259 IAQKLGYKTGLAKGMGLGATYFVVFCCYALLLWYGGYLVRHHLTNGGLAIATMFAVMIGG 318
Query: 624 RGLALSLSYFAQFAQGTVAATRVFEIIDRVPEIDPYNSEGRKLSSVSGKIEFKGVTFAYP 683
L S A FA+ VAA ++F IID P I+ + G +L SV+G +E K V F+YP
Sbjct: 319 LALGQSAPSMAAFAKAKVAAAKIFRIIDHKPTIERNSESGVELDSVTGLVELKNVDFSYP 378
Query: 684 SRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQ 743
SRP+ IL + L +P+ KT+ALVG+SG GKSTV +LIERFYDP G + LDG DLK+L+
Sbjct: 379 SRPDVKILNNFCLSVPAGKTIALVGSSGSGKSTVVSLIERFYDPNSGQVLLDGQDLKTLK 438
Query: 744 VKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDT 803
++WLR QIG+V QEP LFATSI EN+L+G+ +A E A + A+AHSFI +LP G+DT
Sbjct: 439 LRWLRQQIGLVSQEPALFATSIKENILLGRPDADQVEIEEAARVANAHSFIIKLPDGFDT 498
Query: 804 QVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTT 863
QVG+RG QLSGGQKQRIA+ARAM+K+P ILLLDE TSALDSESE +VQ+A+D+ +GRTT
Sbjct: 499 QVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTT 558
Query: 864 IVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLERG--GAYHDLVKLASEA-------V 914
++IAHRL+T++ A+ + VL QGSV EIG H +L +G G Y L+K+ A
Sbjct: 559 LIIAHRLSTIRKADLVAVLQQGSVSEIGTHDELFSKGENGVYAKLIKMQEAAHETAMSNA 618
Query: 915 SQPQSKQKDAKRGIEFSIYEKSVIEVSRSRYANEVSK-SKYFKSMQAEIQTVEEEQQKPR 973
+ ++ A+ + I ++ RS Y+ +S S S+ + + + +
Sbjct: 619 RKSSARPSSARNSVSSPIMTRNS-SYGRSPYSRRLSDFSTSDFSLSIDASSYPNYRNEKL 677
Query: 974 PRKFQLSEIWKLQR---PEFAMIIFGFILGMHAGAILSIFPLILGQALQVYFDDTASTLR 1030
K Q + W+L + PE+ + G + + G++ + F +L L VY++ +
Sbjct: 678 AFKDQANSFWRLAKMNSPEWKYALLGSVGSVICGSLSAFFAYVLSAVLSVYYNPDHEYMI 737
Query: 1031 RDVRYLSLALVGLGFGCIIFMTGQQGFCGWAGTKLTMRVRELLFRSILKQEPGWFDFEEN 1090
+ + L+GL ++F T Q F G LT RVRE + ++LK E WFD EEN
Sbjct: 738 KQIDKYCYLLIGLSSAALVFNTLQHSFWDIVGENLTKRVREKMLSAVLKNEMAWFDQEEN 797
Query: 1091 STGVLVSRLSIDSISFRSVLGDRFSVLLMGLSSAAVGLGVSLVLNWRLTLVAAALTPFTL 1150
+ + +RL++D+ + RS +GDR SV++ + V VL WRL LV A+ P +
Sbjct: 798 ESARIAARLALDANNVRSAIGDRISVIVQNTALMLVACTAGFVLQWRLALVLVAVFPVVV 857
Query: 1151 GASYLSLIINVGPKID-NSSYAKASSIASGAVSNIRTVTTFSAQEQIINSFDKALSEPKK 1209
A+ L + G D +++AK + +A A++N+RTV F+++ +I+ + L P K
Sbjct: 858 AATVLQKMFMTGFSGDLEAAHAKGTQLAGEAIANVRTVAAFNSEAKIVRLYTANLEPPLK 917
Query: 1210 KSVKRSQILGLTLGFSQGAMYVAYTFTLWFGAYLVKQGHASFGVVYKIFLILVLSSFSVG 1269
+ + QI G G +Q +Y +Y LW+ ++LVK G + F ++F++L++S+
Sbjct: 918 RCFWKGQIAGSGYGVAQFCLYASYALGLWYASWLVKHGISDFSKTIRVFMVLMVSANGAA 977
Query: 1270 QLAGLAPDTSMAATAIPAVLQITKRK-----------PLIDNVKGRKLERSKPLGIELKM 1318
+ LAPD A+ +V ++ RK P+ D ++G +ELK
Sbjct: 978 ETLTLAPDFIKGGQAMRSVFELLDRKTEIEPDDPDTTPVPDRLRGE---------VELKH 1028
Query: 1319 VTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGV 1378
+ F+YPSRP++ + +D L+ + G +ALVG SG GKS+VI LIQRFY+P+ G+VMI+G
Sbjct: 1029 IDFSYPSRPDIQIFRDLSLRARAGKTLALVGPSGCGKSSVISLIQRFYEPSSGRVMIDGK 1088
Query: 1379 DLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSL 1438
D+R+ N+K +RK A+V QEP LF TI +NIA G+ A+ AEI +AA A HKFIS+L
Sbjct: 1089 DIRKYNLKAIRKHIAIVPQEPCLFGTTIYENIAYGHECATEAEIIQAATLASAHKFISAL 1148
Query: 1439 PQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKV 1498
P+GY+T VGE GVQLSGGQKQRIAIARA+++ + ++LLDEA+SALD ESE+ VQ+AL +
Sbjct: 1149 PEGYKTYVGERGVQLSGGQKQRIAIARALVRKAEIMLLDEATSALDAESERSVQEALDQA 1208
Query: 1499 SKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETLLASHLNGVYASLVRAE 1553
T+IVVAHRLSTIR A++IAV+ DG V E GSH LL +H +G+YA +++ +
Sbjct: 1209 CSGRTSIVVAHRLSTIRNAHVIAVIDDGKVAEQGSHSHLLKNHPDGIYARMIQLQ 1263
|
Auxin efflux transporter that acts as a negative regulator of light signaling to promote hypocotyl elongation. Mediates the accumulation of chlorophyll and anthocyanin, as well as the expression of genes in response to light. Participates directly in auxin efflux and thus regulates the polar (presumably basipetal) auxin transport (from root tips to root elongating zone). Transports also some auxin metabolites such as oxindoleacetic acid and indoleacetaldehyde. Involved in divers auxin-mediated responses including gravitropism, phototropism and lateral root formation. Confers resistance to herbicides such as dicamba, pendimethalin, oryzalin, and monosodium acid methanearsonate (MSMA), but not to herbicides such as glyphosate, atrazine, bentazon and fluazifop-p-butyl. Mediates also resistance to xenobiotics such as cycloheximide and the cytokinin N6-(2-isopentenyl)adenine (2IP). Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FWX7|AB11B_ARATH ABC transporter B family member 11 OS=Arabidopsis thaliana GN=ABCB11 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 956 bits (2470), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 524/1250 (41%), Positives = 767/1250 (61%), Gaps = 29/1250 (2%)
Query: 327 AKPVGLFSLFKYSTKLDMILVLLGCIGALINGGALPWYSYFFGNFVNKIANESSDPDKTQ 386
A V + LF ++ D++L++ G IGA+ NG +LP+ + FG+ ++ ++ D
Sbjct: 38 ANTVPFYKLFAFADSSDVLLMICGSIGAIGNGMSLPFMTLLFGDLIDSFGKNQNNKDIVD 97
Query: 387 MMKDAEKICLLMTVLAAIVMMGAYLEITCWRLVGERSAQRIRTKYLRAVLRQDIAFFDTE 446
++ K+CL L + A+L++ CW + GER A RIR+ YL+ +LRQDI FFD E
Sbjct: 98 VV---SKVCLKFVYLGLGTLGAAFLQVACWMITGERQAARIRSTYLKTILRQDIGFFDVE 154
Query: 447 VSTSDIMHGISSDIAQIQEVMGEKVAHFAHNIFTFICGYTVGFLRSWKVSLVVLSVTPLM 506
+T +++ +S D IQ+ MGEKV F + TF+ G+ + F++ W ++LV+L+ PL+
Sbjct: 155 TNTGEVVGRMSGDTVLIQDAMGEKVGKFIQLVSTFVGGFVLAFIKGWLLTLVMLTSIPLL 214
Query: 507 MFCGMAYKAVYVGLTSKEEASYRRAGSVAEQAISSIRTVFSFVAEDHFAVRYAGLLADSI 566
G A + +S+ +A+Y +A +V EQ I SIRTV SF E Y + +
Sbjct: 215 AMAGAAMALIVTRASSRGQAAYAKAATVVEQTIGSIRTVASFTGEKQAINSYKKFITSAY 274
Query: 567 PFGAKLGFAKGAGMGVIYLVTYATWALAFWYGSILVARKELSGGAAIACFFGVNVGGRGL 626
+ GF+ G G+GV++ V ++++ALA W+G ++ K +GGA I V G L
Sbjct: 275 KSSIQQGFSTGLGLGVMFFVFFSSYALAIWFGGKMILEKGYTGGAVINVIIIVVAGSMSL 334
Query: 627 ALSLSYFAQFAQGTVAATRVFEIIDRVPEIDPYNSEGRKLSSVSGKIEFKGVTFAYPSRP 686
+ FA G AA ++FE I R P ID Y+ G+ L + G IE K V F+YP+RP
Sbjct: 335 GQTSPCVTAFAAGQAAAYKMFETIKRKPLIDAYDVNGKVLEDIRGDIELKDVHFSYPARP 394
Query: 687 ETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKW 746
+ I +L IPS T ALVG SG GKSTV +LIERFYDP G + +DG +LK Q+KW
Sbjct: 395 DEEIFDGFSLFIPSGATAALVGESGSGKSTVISLIERFYDPKSGAVLIDGVNLKEFQLKW 454
Query: 747 LRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVG 806
+R++IG+V QEP+LF++SI+EN+ GKENAT++E AA + A+A FI +LP G DT VG
Sbjct: 455 IRSKIGLVSQEPVLFSSSIMENIAYGKENATVEEIKAATELANAAKFIDKLPQGLDTMVG 514
Query: 807 DRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVI 866
+ GTQLSGGQKQRIA+ARA++KDPRILLLDE TSALD+ESE +VQ+A+D++ V RTT+++
Sbjct: 515 EHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDRVMVNRTTVIV 574
Query: 867 AHRLATVKNANTIVVLDQGSVVEIGNHRQLLERG-GAYHDLVKL--------ASEAVSQP 917
AHRL+TV+NA+ I V+ +G +VE G+H +LL+ GAY L++L SE S
Sbjct: 575 AHRLSTVRNADMIAVIHRGKMVEKGSHSELLKDSEGAYSQLIRLQEINKDVKTSELSSGS 634
Query: 918 QSKQKDAKRGIEFSIYEKSVIEVSRSRYANEVSKSKYFK----SMQAEIQTVEEEQQKPR 973
+ + K+ +E + SV SR N + + S +A Q+P
Sbjct: 635 SFRNSNLKKSMEGT---SSVGNSSRHHSLNVLGLTTGLDLGSHSQRAGQDETGTASQEPL 691
Query: 974 PRKFQLSEIWKLQRPEFAMIIFGFILGMHAGAILSIFPLILGQALQVYFDDTASTLRRDV 1033
P K L+ I L +PE +++ G + GAI +F +++ + ++ +F A L+RD
Sbjct: 692 P-KVSLTRIAALNKPEIPVLLLGTVAAAINGAIFPLFGILISRVIEAFF-KPAHELKRDS 749
Query: 1034 RYLSLALVGLGFGCIIFMTGQQGFCGWAGTKLTMRVRELLFRSILKQEPGWFDFEENSTG 1093
R+ ++ V LG +I Q AG KL R+R + F + E WFD +NS+G
Sbjct: 750 RFWAIIFVALGVTSLIVSPTQMYLFAVAGGKLIRRIRSMCFEKAVHMEVAWFDEPQNSSG 809
Query: 1094 VLVSRLSIDSISFRSVLGDRFSVLLMGLSSAAVGLGVSLVLNWRLTLVAAALTPFTLGAS 1153
+ +RLS D+ R+++GD S+ + ++SAA GL ++ +W L L+ + P
Sbjct: 810 TMGARLSADATLIRALVGDALSLAVQNVASAASGLIIAFTASWELALIILVMLPLIGING 869
Query: 1154 YLSLIINVGPKID-NSSYAKASSIASGAVSNIRTVTTFSAQEQIINSFDKALSEPKKKSV 1212
++ + G D S Y +AS +A+ AV +IRTV +F A+E+++ + K P K +
Sbjct: 870 FVQVKFMKGFSADAKSKYEEASQVANDAVGSIRTVASFCAEEKVMQMYKKQCEGPIKDGI 929
Query: 1213 KRSQILGLTLGFSQGAMYVAYTFTLWFGAYLVKQGHASFGVVYKIFLILVLSSFSVGQLA 1272
K+ I GL GFS ++ Y + + GA LV+ G +F V+++F L +++ + Q +
Sbjct: 930 KQGFISGLGFGFSFFILFCVYATSFYAGARLVEDGKTTFNNVFQVFFALTMAAIGISQSS 989
Query: 1273 GLAPDTSMAATAIPAVLQITKRKPLID--NVKGRKLERSKPLGIELKMVTFTYPSRPEVT 1330
APD+S A A ++ I RK ID + G LE K IEL+ ++FTYP+RP++
Sbjct: 990 TFAPDSSKAKVAAASIFAIIDRKSKIDSSDETGTVLENVKG-DIELRHLSFTYPARPDIQ 1048
Query: 1331 VLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRK 1390
+ +D CL ++ G VALVG SGSGKSTVI L+QRFYDP+ G + ++GV+L+++ +KWLR+
Sbjct: 1049 IFRDLCLTIRAGKTVALVGESGSGKSTVISLLQRFYDPDSGHITLDGVELKKLQLKWLRQ 1108
Query: 1391 QTALVGQEPALFAGTIRDNIALGN---PKASWAEIEEAAEEAYIHKFISSLPQGYETQVG 1447
Q LVGQEP LF TIR NIA G A+ +EI AAE A HKFISS+ QGY+T VG
Sbjct: 1109 QMGLVGQEPVLFNDTIRANIAYGKGSEEAATESEIIAAAELANAHKFISSIQQGYDTVVG 1168
Query: 1448 ESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVV 1507
E G+QLSGGQKQR+AIARAI+K ++LLLDEA+SALD ESE+ VQDAL +V TTIVV
Sbjct: 1169 ERGIQLSGGQKQRVAIARAIVKEPKILLLDEATSALDAESERVVQDALDRVMVNRTTIVV 1228
Query: 1508 AHRLSTIREANMIAVVRDGAVVEYGSHETLLASHLNGVYASLVRAETEAN 1557
AHRLSTI+ A++IAVV++G + E G+HETL+ GVYASLV+ A+
Sbjct: 1229 AHRLSTIKNADVIAVVKNGVIAEKGTHETLIKIE-GGVYASLVQLHMTAS 1277
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SGY1|AB10B_ARATH ABC transporter B family member 10 OS=Arabidopsis thaliana GN=ABCB10 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 952 bits (2460), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 509/1246 (40%), Positives = 766/1246 (61%), Gaps = 37/1246 (2%)
Query: 310 NNDPELVSPYNEDDAEVAKPVGLFSLFKYSTKLDMILVLLGCIGALINGGALPWYSYFFG 369
+NDP +V + + V LF ++ D +L+ LG IGA I+G ++P + FFG
Sbjct: 4 SNDPAIVDMAAAEKEKKRPSVSFLKLFSFADFYDCVLMALGSIGACIHGASVPVFFIFFG 63
Query: 370 NFVNKIANESSDPDKTQMMKDAEKICLLMTVLAAIVMMGAYLEITCWRLVGERSAQRIRT 429
+N I P + K L L+ +++ ++LE+ CW GER A +IR
Sbjct: 64 KLINIIGLAYLFPQEAS--HKVAKYSLDFVYLSVVILFSSWLEVACWMHTGERQAAKIRK 121
Query: 430 KYLRAVLRQDIAFFDTEVSTSDIMHGISSDIAQIQEVMGEKVAHFAHNIFTFICGYTVGF 489
YLR++L QDI+ FDTE+ST +++ I+S+I +Q+ + EKV +F H I FI G+ +GF
Sbjct: 122 AYLRSMLSQDISLFDTEISTGEVISAITSEILVVQDAISEKVGNFMHFISRFIAGFAIGF 181
Query: 490 LRSWKVSLVVLSVTPLMMFCGMAYKAVYVGLTSKEEASYRRAGSVAEQAISSIRTVFSFV 549
W++SLV LS+ P + G Y V GL + SY +A +AE+ I ++RTV +F
Sbjct: 182 ASVWQISLVTLSIVPFIALAGGIYAFVSSGLIVRVRKSYVKANEIAEEVIGNVRTVQAFT 241
Query: 550 AEDHFAVRYAGLLADSIPFGAKLGFAKGAGMGVIYLVTYATWALAFWYGSILVARKELSG 609
E+ Y G L ++ +G K G AKG G+G ++ V + +WAL W+ SI+V + +G
Sbjct: 242 GEEKAVSSYQGALRNTYNYGRKAGLAKGLGLGSLHFVLFLSWALLIWFTSIVVHKGIANG 301
Query: 610 GAAIACFFGVNVGGRGLALSLSYFAQFAQGTVAATRVFEIIDRVPEIDPYNSEGRKLSSV 669
G + V + G L + + F + + AA +F++I+R E + GRKL +V
Sbjct: 302 GESFTTMLNVVIAGLSLGQAAPDISTFMRASAAAYPIFQMIERNTE----DKTGRKLGNV 357
Query: 670 SGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTK 729
+G I FK VTF YPSRP+ VI LN VIP+ K +ALVG SG GKST+ +LIERFY+PT
Sbjct: 358 NGDILFKDVTFTYPSRPDVVIFDKLNFVIPAGKVVALVGGSGSGKSTMISLIERFYEPTD 417
Query: 730 GLITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAAS 789
G + LDG+D++ L +KWLR IG+V QEP+LFAT+I EN++ GK++AT +E A K +
Sbjct: 418 GAVMLDGNDIRYLDLKWLRGHIGLVNQEPVLFATTIRENIMYGKDDATSEEITNAAKLSE 477
Query: 790 AHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESI 849
A SFI+ LP G++TQVG+RG QLSGGQKQRI+++RA++K+P ILLLDE TSALD+ESE I
Sbjct: 478 AISFINNLPEGFETQVGERGIQLSGGQKQRISISRAIVKNPSILLLDEATSALDAESEKI 537
Query: 850 VQQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLER-GGAYHDLVK 908
VQ+A+D++ VGRTT+V+AHRL+TV+NA+ I V+ G ++E G+H +L+ GAY L++
Sbjct: 538 VQEALDRVMVGRTTVVVAHRLSTVRNADIIAVVGGGKIIESGSHDELISNPDGAYSSLLR 597
Query: 909 L---ASEAVSQPQSKQKDAKRGIEFSIYEKSVIEVSRSRYANEVSKSKYFKSMQAEIQTV 965
+ AS ++ S K E I E + + I
Sbjct: 598 IQEAASPNLNHTPSLPVSTKPLPELPITETT-----------------------SSIHQS 634
Query: 966 EEEQQKPRPRKFQLSEIWKLQRPEFAMIIFGFILGMHAGAILSIFPLILGQALQVYFDDT 1025
+ + K + ++ + RP++ + G + AG+ + +F L + QAL Y+ D
Sbjct: 635 VNQPDTTKQAKVTVGRLYSMIRPDWKYGLCGTLGSFIAGSQMPLFALGIAQALVSYYMDW 694
Query: 1026 ASTLRRDVRYLSLALVGLGFGCIIFMTGQQGFCGWAGTKLTMRVRELLFRSILKQEPGWF 1085
+T + +V+ +S+ +I T + G G +LT+RVR+ +F +IL+ E GWF
Sbjct: 695 ETT-QNEVKRISILFCCGSVITVIVHTIEHTTFGIMGERLTLRVRQKMFSAILRNEIGWF 753
Query: 1086 DFEENSTGVLVSRLSIDSISFRSVLGDRFSVLLMGLSSAAVGLGVSLVLNWRLTLVAAAL 1145
D +N++ +L SRL D+ R+++ DR ++LL L +S +LNWRLTLV A
Sbjct: 754 DKVDNTSSMLASRLESDATLLRTIVVDRSTILLENLGLVVTAFIISFILNWRLTLVVLAT 813
Query: 1146 TPFTLGASYLSLIINVGPKIDNS-SYAKASSIASGAVSNIRTVTTFSAQEQIINSFDKAL 1204
P + I G + S +Y KA+ +A ++SNIRTV F A+E++++ + K L
Sbjct: 814 YPLIISGHISEKIFMQGYGGNLSKAYLKANMLAGESISNIRTVVAFCAEEKVLDLYSKEL 873
Query: 1205 SEPKKKSVKRSQILGLTLGFSQGAMYVAYTFTLWFGAYLVKQGHASFGVVYKIFLILVLS 1264
EP ++S +R Q+ G+ G SQ ++ +Y LW+G+ L+++G +SF V K F++L+++
Sbjct: 874 LEPSERSFRRGQMAGILYGVSQFFIFSSYGLALWYGSILMEKGLSSFESVMKTFMVLIVT 933
Query: 1265 SFSVGQLAGLAPDTSMAATAIPAVLQITKRKPLIDNVKGRKLERSKPLGIELKMVTFTYP 1324
+ +G++ LAPD + +V ++ R+ + G +L + IELK V F+YP
Sbjct: 934 ALVMGEVLALAPDLLKGNQMVVSVFELLDRRTQVVGDTGEELSNVEGT-IELKGVHFSYP 992
Query: 1325 SRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREIN 1384
SRP+VT+ DF L V G +ALVG SGSGKS+V+ L+ RFYDP G +MI+G D++++
Sbjct: 993 SRPDVTIFSDFNLLVPSGKSMALVGQSGSGKSSVLSLVLRFYDPTAGIIMIDGQDIKKLK 1052
Query: 1385 VKWLRKQTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYET 1444
+K LR+ LV QEPALFA TI +NI G AS +E+ EAA+ A H FISSLP+GY T
Sbjct: 1053 LKSLRRHIGLVQQEPALFATTIYENILYGKEGASESEVMEAAKLANAHSFISSLPEGYST 1112
Query: 1445 QVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATT 1504
+VGE G+Q+SGGQ+QRIAIARA+LK +LLLDEA+SALD+ESE+ VQ AL ++ + TT
Sbjct: 1113 KVGERGIQMSGGQRQRIAIARAVLKNPEILLLDEATSALDVESERVVQQALDRLMRDRTT 1172
Query: 1505 IVVAHRLSTIREANMIAVVRDGAVVEYGSHETLLASHLNGVYASLV 1550
+VVAHRLSTI+ ++MI+V++DG ++E GSH +L + NG Y+ L+
Sbjct: 1173 VVVAHRLSTIKNSDMISVIQDGKIIEQGSH-NILVENKNGPYSKLI 1217
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SYI3|AB5B_ARATH ABC transporter B family member 5 OS=Arabidopsis thaliana GN=ABCB5 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 944 bits (2440), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 515/1236 (41%), Positives = 758/1236 (61%), Gaps = 23/1236 (1%)
Query: 328 KPVGLFSLFKYSTKLDMILVLLGCIGALINGGALPWYSYFFGNFVNKIANESSDPDKTQM 387
K V + LF +S D++L+++G IGA+ NG P + FG ++ + + + ++
Sbjct: 11 KTVPFYKLFFFSDSTDVLLMIVGSIGAIANGVCSPLMTLLFGELIDAMG---PNQNNEEI 67
Query: 388 MKDAEKICLLMTVLAAIVMMGAYLEITCWRLVGERSAQRIRTKYLRAVLRQDIAFFDTEV 447
++ K+CL + L + A+L++ CW + GER A RIR+ YL+ +LRQDI FFD E+
Sbjct: 68 VERVSKVCLSLVYLGLGALGAAFLQVACWMITGERQAARIRSLYLKTILRQDIGFFDVEM 127
Query: 448 STSDIMHGISSDIAQIQEVMGEKVAHFAHNIFTFICGYTVGFLRSWKVSLVVLSVTPLMM 507
+T +++ +S D I + MGEKV F I TF+ G+ + FLR W ++LV+L+ PL+
Sbjct: 128 TTGEVVGRMSGDTVLILDAMGEKVGKFIQLISTFVGGFVIAFLRGWLLTLVMLTSIPLLA 187
Query: 508 FCGMAYKAVYVGLTSKEEASYRRAGSVAEQAISSIRTVFSFVAEDHFAVRYAGLLADSIP 567
G A + +S+E+A+Y +A +V EQ + SIRTV SF E Y L+ +
Sbjct: 188 MSGAAIAIIVTRASSQEQAAYAKASNVVEQTLGSIRTVASFTGEKQAMSSYKELINLAYK 247
Query: 568 FGAKLGFAKGAGMGVIYLVTYATWALAFWYGSILVARKELSGGAAIACFFGVNVGGRGLA 627
K GF G G+GV++LV ++T+AL W+G ++ RK +GGA I V L
Sbjct: 248 SNVKQGFVTGLGLGVMFLVFFSTYALGTWFGGEMILRKGYTGGAVINVMVTVVSSSIALG 307
Query: 628 LSLSYFAQFAQGTVAATRVFEIIDRVPEIDPYNSEGRKLSSVSGKIEFKGVTFAYPSRPE 687
+ F G AA ++FE I+R P ID ++ G+ L + G+IE + V F+YP+RP+
Sbjct: 308 QASPCLTAFTAGKAAAYKMFETIEREPLIDTFDLNGKVLEDIRGEIELRDVCFSYPARPK 367
Query: 688 TVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWL 747
+ +L+IPS T ALVG SG GKSTV +LIERFYDP G + +DG DLK Q+KW+
Sbjct: 368 EEVFGGFSLLIPSGTTTALVGESGSGKSTVISLIERFYDPNSGQVLIDGVDLKEFQLKWI 427
Query: 748 RTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGD 807
R +IG+V QEP+LF++SI+EN+ GKE AT++E AA K A+A FI +LPLG +T VG+
Sbjct: 428 RGKIGLVSQEPVLFSSSIMENIGYGKEGATVEEIQAASKLANAAKFIDKLPLGLETLVGE 487
Query: 808 RGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIA 867
GTQLSGGQKQRIA+ARA++KDPRILLLDE TSALD+ESE +VQ+A+D+I V RTT+++A
Sbjct: 488 HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDRIMVNRTTVIVA 547
Query: 868 HRLATVKNANTIVVLDQGSVVEIGNHRQLL-ERGGAYHDLVKLASEAVSQPQSKQKDAKR 926
HRL+TV+NA+ I V+ +G +VE G+H +LL + GAY L++L Q K++KR
Sbjct: 548 HRLSTVRNADIIAVIHRGKIVEEGSHSELLKDHEGAYSQLLRL--------QEINKESKR 599
Query: 927 GIEFSIYEKSVIEVSRSRYANEVSKSKYFKSMQAEIQTVEEEQQKPRPRKFQLSEIWKLQ 986
+E S S + + S + A + + Q+ +K + I L
Sbjct: 600 -LEISDGSISSGSSRGNNSTRQDDDSFSVLGLLAGQDSTKMSQE--LSQKVSFTRIAALN 656
Query: 987 RPEFAMIIFGFILGMHAGAILSIFPLILGQALQVYFDDTASTLRRDVRYLSLALVGLGFG 1046
+PE ++I G ++G G I IF ++ + ++ +F L+RD R+ S+ V LG
Sbjct: 657 KPEIPILILGTLVGAVNGTIFPIFGILFAKVIEAFF-KAPHELKRDSRFWSMIFVLLGVA 715
Query: 1047 CIIFMTGQQGFCGWAGTKLTMRVRELLFRSILKQEPGWFDFEENSTGVLVSRLSIDSISF 1106
+I AG +L R+R + F ++ E GWFD NS+G + +RLS D+
Sbjct: 716 AVIVYPTTNYLFAIAGGRLIRRIRSMCFEKVVHMEVGWFDEPGNSSGAMGARLSADAALI 775
Query: 1107 RSVLGDRFSVLLMGLSSAAVGLGVSLVLNWRLTLVAAALTPFTLGASYLSLIINVGPKID 1166
R+++GD + + ++S GL ++ +W + ++ + PF Y+ + G D
Sbjct: 776 RTLVGDSLCLSVKNVASLVTGLIIAFTASWEVAIIILVIIPFIGINGYIQIKFMKGFSAD 835
Query: 1167 -NSSYAKASSIASGAVSNIRTVTTFSAQEQIINSFDKALSEPKKKSVKRSQILGLTLGFS 1225
+ Y +AS +A+ AV +IRTV +F A+E+++ + K + K +K+ I G+ G S
Sbjct: 836 AKAKYEEASQVANDAVGSIRTVASFCAEEKVMEMYKKRCEDTIKSGIKQGLISGVGFGIS 895
Query: 1226 QGAMYVAYTFTLWFGAYLVKQGHASFGVVYKIFLILVLSSFSVGQLAGLAPDTSMAATAI 1285
+Y Y + GA LVK G +F V+++FL L L++ + Q + APD+S A
Sbjct: 896 FFVLYSVYASCFYVGARLVKAGRTNFNDVFQVFLALTLTAVGISQASSFAPDSSKGKGAA 955
Query: 1286 PAVLQITKRKPLID--NVKGRKLERSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGS 1343
++ +I R ID + G LE K IEL ++FTY +RP+V V +D CL ++ G
Sbjct: 956 VSIFRIIDRISKIDSRDESGMVLENVKG-DIELCHISFTYQTRPDVQVFRDLCLSIRAGQ 1014
Query: 1344 MVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQEPALFA 1403
VALVG SGSGKSTVI L+QRFYDP+ G + ++GV+L+++ +KWLR+Q LVGQEP LF
Sbjct: 1015 TVALVGESGSGKSTVISLLQRFYDPDSGHITLDGVELKKLRLKWLRQQMGLVGQEPVLFN 1074
Query: 1404 GTIRDNIALGN--PKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRI 1461
TIR NIA G +A+ AEI A+E A H+FISS+ +GY+T VGE G+QLSGGQKQR+
Sbjct: 1075 DTIRANIAYGKGGEEATEAEIIAASELANAHRFISSIQKGYDTVVGERGIQLSGGQKQRV 1134
Query: 1462 AIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIREANMIA 1521
AIARAI+K ++LLLDEA+SALD ESE+ VQDAL +V TTIVVAHRLSTI+ A++IA
Sbjct: 1135 AIARAIVKEPKILLLDEATSALDAESERVVQDALDRVMVNRTTIVVAHRLSTIKNADVIA 1194
Query: 1522 VVRDGAVVEYGSHETLLASHLNGVYASLVRAETEAN 1557
VV++G + E G+HETL+ GVYASLV+ A+
Sbjct: 1195 VVKNGVIAEKGTHETLINIE-GGVYASLVQLHINAS 1229
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FWX8|AB12B_ARATH ABC transporter B family member 12 OS=Arabidopsis thaliana GN=ABCB12 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 939 bits (2428), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 522/1258 (41%), Positives = 764/1258 (60%), Gaps = 33/1258 (2%)
Query: 325 EVAKPVGLFSLFKYSTKLDMILVLLGCIGALINGGALPWYSYFFGNFVNKIANESSDPDK 384
E AK V L+ LF ++ D+ L++ G +GA+ NG LP + FG+ ++ ++ D
Sbjct: 23 EKAKTVPLYKLFAFADSFDVFLMICGSLGAIGNGVCLPLMTLLFGDLIDSFGKNQNNKDI 82
Query: 385 TQMMKDAEKICLLMTVLAAIVMMGAYLEITCWRLVGERSAQRIRTKYLRAVLRQDIAFFD 444
++ K+CL L + A+L++ CW + GER A +IR+ YL+ +LRQDI FFD
Sbjct: 83 VDVV---SKVCLKFVYLGLGRLGAAFLQVACWMITGERQAAKIRSNYLKTILRQDIGFFD 139
Query: 445 TEVSTSDIMHGISSDIAQIQEVMGEKVAHFAHNIFTFICGYTVGFLRSWKVSLVVLSVTP 504
E +T +++ +S D IQ+ MGEKV F + TF+ G+ + F + W ++LV+L+ P
Sbjct: 140 VETNTGEVVGRMSGDTVHIQDAMGEKVGKFIQLVSTFVGGFALAFAKGWLLTLVMLTSIP 199
Query: 505 LMMFCGMAYKAVYVGLTSKEEASYRRAGSVAEQAISSIRTVFSFVAEDHFAVRYAGLLAD 564
+ G A + +S+ +A+Y +A +V EQ I SIRTV SF E Y +
Sbjct: 200 FLAMAGAAMALLVTRASSRGQAAYAKAATVVEQTIGSIRTVASFTGEKQAINSYKKYITS 259
Query: 565 SIPFGAKLGFAKGAGMGVIYLVTYATWALAFWYGSILVARKELSGGAAIACFFGVNVGGR 624
+ + GF+ G G+GV+ V ++++ALA W+G ++ K +GG+ I V G
Sbjct: 260 AYKSSIQQGFSTGLGLGVMIYVFFSSYALAIWFGGKMILEKGYTGGSVINVIIIVVAGSM 319
Query: 625 GLALSLSYFAQFAQGTVAATRVFEIIDRVPEIDPYNSEGRKLSSVSGKIEFKGVTFAYPS 684
L + FA G AA ++FE I R P ID Y+ G+ L + G IE K V F+YP+
Sbjct: 320 SLGQTSPCVTAFAAGQAAAYKMFETIKRKPLIDAYDVNGKVLGDIRGDIELKDVHFSYPA 379
Query: 685 RPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQV 744
RP+ I +L IPS T ALVG SG GKSTV LIERFYDP G + +DG +LK Q+
Sbjct: 380 RPDEEIFDGFSLFIPSGATAALVGESGSGKSTVINLIERFYDPKAGEVLIDGINLKEFQL 439
Query: 745 KWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQ 804
KW+R++IG+V QEP+LF++SI+EN+ GKENAT++E A + A+A FI+ LP G DT+
Sbjct: 440 KWIRSKIGLVCQEPVLFSSSIMENIAYGKENATLQEIKVATELANAAKFINNLPQGLDTK 499
Query: 805 VGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTI 864
VG+ GTQLSGGQKQRIA+ARA++KDPR+LLLDE TSALD+ESE +VQ+A+D++ V RTT+
Sbjct: 500 VGEHGTQLSGGQKQRIAIARAILKDPRVLLLDEATSALDTESERVVQEALDRVMVNRTTV 559
Query: 865 VIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLERG-GAYHDLVKLASEAVSQPQSKQKD 923
V+AHRL+TV+NA+ I V+ G +VE G+H +LL+ GAY L++ E +K D
Sbjct: 560 VVAHRLSTVRNADMIAVIHSGKMVEKGSHSELLKDSVGAYSQLIR-CQEINKGHDAKPSD 618
Query: 924 AKRGIEFS------IYEKSVIEVSRSRYAN-----EVSKSKYFKSMQ--AEIQTVEEEQ- 969
G F E SVI S + N ++ F + + Q V +E+
Sbjct: 619 MASGSSFRNSNLNISREGSVISGGTSSFGNSSRHHSLNVLGLFAGLDLGSGSQRVGQEET 678
Query: 970 ----QKPRPRKFQLSEIWKLQRPEFAMIIFGFILGMHAGAILSIFPLILGQALQVYFDDT 1025
Q+P RK L+ I L +PE +++ G ++ GAI +F +++ + ++ +F
Sbjct: 679 GTTSQEPL-RKVSLTRIAALNKPEIPVLLLGTVVAAINGAIFPLFGILISRVIEAFF-KP 736
Query: 1026 ASTLRRDVRYLSLALVGLGFGCIIFMTGQQGFCGWAGTKLTMRVRELLFRSILKQEPGWF 1085
A L++D R+ ++ V LG +I Q AG KL R++ + F + E WF
Sbjct: 737 ADQLKKDSRFWAIIFVALGVTSLIVSPSQMYLFAVAGGKLIRRIQSMCFEKAVHMEVSWF 796
Query: 1086 DFEENSTGVLVSRLSIDSISFRSVLGDRFSVLLMGLSSAAVGLGVSLVLNWRLTLVAAAL 1145
D ENS+G + +RLS D+ R+++GD S+ + +SAA GL ++ +W L L+ +
Sbjct: 797 DEPENSSGTMGARLSTDAALIRALVGDALSLAVQNAASAASGLIIAFTASWELALIILVM 856
Query: 1146 TPFTLGASYLSLIINVGPKID-NSSYAKASSIASGAVSNIRTVTTFSAQEQIINSFDKAL 1204
P +L + G D S Y +AS +A+ AV +IRTV +F A+E+++ ++K
Sbjct: 857 LPLIGINGFLQVKFMKGFSADAKSKYEEASQVANDAVGSIRTVASFCAEEKVMQMYNKQC 916
Query: 1205 SEPKKKSVKRSQILGLTLGFSQGAMYVAYTFTLWFGAYLVKQGHASFGVVYKIFLILVLS 1264
P K VK+ I GL GFS ++ Y + + A LV+ G +F V+++F L ++
Sbjct: 917 EGPIKDGVKQGFISGLGFGFSFFILFCVYATSFYAAARLVEDGKTTFIDVFQVFFALTMA 976
Query: 1265 SFSVGQLAGLAPDTSMAATAIPAVLQITKRKPLID--NVKGRKLERSKPLGIELKMVTFT 1322
+ + Q + APD+S A A ++ I RK ID + G LE K IEL+ ++FT
Sbjct: 977 AIGISQSSTFAPDSSKAKVAAASIFAIIDRKSKIDSSDETGTVLENVKG-DIELRHLSFT 1035
Query: 1323 YPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLRE 1382
YP+RP + + +D CL ++ G VALVG SGSGKSTVI L+QRFYDP+ G++ ++GV+L++
Sbjct: 1036 YPARPGIQIFRDLCLTIRAGKTVALVGESGSGKSTVISLLQRFYDPDSGQITLDGVELKK 1095
Query: 1383 INVKWLRKQTALVGQEPALFAGTIRDNIALGN---PKASWAEIEEAAEEAYIHKFISSLP 1439
+ +KWLR+Q LVGQEP LF TIR NIA G A+ +EI AAE A HKFISS+
Sbjct: 1096 LQLKWLRQQMGLVGQEPVLFNDTIRANIAYGKGSEEAATESEIIAAAELANAHKFISSIQ 1155
Query: 1440 QGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVS 1499
QGY+T VGE G+QLSGGQKQR+AIARAI+K ++LLLDEA+SALD ESE+ VQDAL +V
Sbjct: 1156 QGYDTVVGEKGIQLSGGQKQRVAIARAIVKEPKILLLDEATSALDAESERLVQDALDRVI 1215
Query: 1500 KRATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETLLASHLNGVYASLVRAETEAN 1557
TT+VVAHRLSTI+ A++IA+V++G + E G+HETL+ GVYASLV+ A+
Sbjct: 1216 VNRTTVVVAHRLSTIKNADVIAIVKNGVIAENGTHETLIKID-GGVYASLVQLHMTAS 1272
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C7F8|AB13B_ARATH ABC transporter B family member 13 OS=Arabidopsis thaliana GN=ABCB13 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 930 bits (2404), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 510/1230 (41%), Positives = 732/1230 (59%), Gaps = 31/1230 (2%)
Query: 330 VGLFSLFKYSTKLDMILVLLGCIGALINGGALPWYSYFFGNFVNKIANESSDPDKTQMMK 389
V L LF + KLD L+LLG +GA I+G LP + FFG ++ + N S+DP +
Sbjct: 30 VSLMGLFSAADKLDYFLMLLGGLGACIHGATLPLFFVFFGKMLDSLGNLSTDPKA--ISS 87
Query: 390 DAEKICLLMTVLAAIVMMGAYLEITCWRLVGERSAQRIRTKYLRAVLRQDIAFFDTEVST 449
+ L + L + + A++ ++CW GER R+R YL+++L +DI FFDTE
Sbjct: 88 RVSQNALYLVYLGLVNFVSAWIGVSCWMQTGERQTARLRINYLKSILAKDITFFDTEARD 147
Query: 450 SDIMHGISSDIAQIQEVMGEKVAHFAHNIFTFICGYTVGFLRSWKVSLVVLSVTPLMMFC 509
S+++ ISSD +Q+ +G+K H + FI G+ +GFL W+++L+ L V PL+
Sbjct: 148 SNLIFHISSDAILVQDAIGDKTDHVLRYLSQFIAGFVIGFLSVWQLTLLTLGVVPLIAIA 207
Query: 510 GMAYKAVYVGLTSKEEASYRRAGSVAEQAISSIRTVFSFVAEDHFAVRYAGLLADSIPFG 569
G Y V ++ K E +Y AG VAE+ +S +RTV++FV E+ Y+ L ++ G
Sbjct: 208 GGGYAIVMSTISEKSETAYADAGKVAEEVMSQVRTVYAFVGEEKAVKSYSNSLKKALKLG 267
Query: 570 AKLGFAKGAGMGVIYLVTYATWALAFWYGSILVARKELSGGAAIACFFGVNVGGRGLALS 629
+ G AKG G+G+ Y + + WAL WY S+LV + +G A V G L +
Sbjct: 268 KRSGLAKGLGVGLTYSLLFCAWALLLWYASLLVRHGKTNGAKAFTTILNVIFSGFALGQA 327
Query: 630 LSYFAQFAQGTVAATRVFEII-DRVPEIDPYNSEGRKLSSVSGKIEFKGVTFAYPSRPET 688
+ A+G VAA +F +I + E EG L +V+G+IEF+ V+FAYPSRP
Sbjct: 328 APSLSAIAKGRVAAANIFRMIGNNNSESSQRLDEGTTLQNVAGRIEFQKVSFAYPSRPN- 386
Query: 689 VILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLR 748
++ +L+ I S KT A VG SG GKST+ ++++RFY+P G I LDG+D+KSL++KW R
Sbjct: 387 MVFENLSFTIRSGKTFAFVGPSGSGKSTIISMVQRFYEPNSGEILLDGNDIKSLKLKWFR 446
Query: 749 TQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDR 808
Q+G+V QEP LFAT+I N+L+GKENA M + + A KAA+A SFI LP GY+TQVG+
Sbjct: 447 EQLGLVSQEPALFATTIASNILLGKENANMDQIIEAAKAANADSFIKSLPNGYNTQVGEG 506
Query: 809 GTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAH 868
GTQLSGGQKQRIA+ARA++++P+ILLLDE TSALD+ESE IVQQA+D + RTTIV+AH
Sbjct: 507 GTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESEKIVQQALDNVMEKRTTIVVAH 566
Query: 869 RLATVKNANTIVVLDQGSVVEIGNHRQLLERGGAYHDLVKLASEAVSQPQSKQKDAKRGI 928
RL+T++N + IVVL G V E G+H +L+ RGG Y LV ++PQ
Sbjct: 567 RLSTIRNVDKIVVLRDGQVRETGSHSELMLRGGDYATLVNCQE---TEPQEN-------- 615
Query: 929 EFSIYEKSVIEVSRSRYANEVSKSKYFKSMQAEIQTVEEEQQK------PRPRKFQLSEI 982
+S++ + A S + S + V++E+ K + E+
Sbjct: 616 -----SRSIMSETCKSQAGSSSSRRVSSSRRTSSFRVDQEKTKNDDSKKDFSSSSMIWEL 670
Query: 983 WKLQRPEFAMIIFGFILGMHAGAILSIFPLILGQALQVYFDDTASTLRRDVRYLSLALVG 1042
KL PE+ + G I + AGA +F + + L ++ + ++RDV +++ G
Sbjct: 671 IKLNSPEWPYALLGSIGAVLAGAQTPLFSMGIAYVLTAFYSPFPNVIKRDVEKVAIIFAG 730
Query: 1043 LGFGCIIFMTGQQGFCGWAGTKLTMRVRELLFRSILKQEPGWFDFEENSTGVLVSRLSID 1102
G Q F G +LT RVR LF +IL E GWFD +EN+TG L S L+ D
Sbjct: 731 AGIVTAPIYLLQHYFYTLMGERLTSRVRLSLFSAILSNEIGWFDLDENNTGSLTSILAAD 790
Query: 1103 SISFRSVLGDRFSVLLMGLSSAAVGLGVSLVLNWRLTLVAAALTPFTLGASYLSLIINVG 1162
+ RS L DR S ++ LS L ++ +WR+ V A P + AS + G
Sbjct: 791 ATLVRSALADRLSTIVQNLSLTVTALALAFFYSWRVAAVVTACFPLLIAASLTEQLFLKG 850
Query: 1163 PKIDNS-SYAKASSIASGAVSNIRTVTTFSAQEQIINSFDKALSEPKKKSVKRSQILGLT 1221
D + +Y++A+S+A A++NIRTV + A++QI F LS+P K + R I G
Sbjct: 851 FGGDYTRAYSRATSVAREAIANIRTVAAYGAEKQISEQFTCELSKPTKNAFVRGHISGFG 910
Query: 1222 LGFSQGAMYVAYTFTLWFGAYLVKQGHASFGVVYKIFLILVLSSFSVGQLAGLAPDTSMA 1281
G SQ + +Y LW+ + L+ +FG K F++L++++FSV + L PD
Sbjct: 911 YGLSQFLAFCSYALGLWYVSVLINHKETNFGDSIKSFMVLIVTAFSVSETLALTPDIVKG 970
Query: 1282 ATAIPAVLQITKRKPLI--DNVKGRKLERSKPLGIELKMVTFTYPSRPEVTVLKDFCLKV 1339
A+ +V ++ R+ I D R + + K IE + V+F YP+RPE+ + K+ L+V
Sbjct: 971 TQALGSVFRVLHRETKISPDQPNSRMVSQVKG-DIEFRNVSFVYPTRPEIDIFKNLNLRV 1029
Query: 1340 KGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQEP 1399
G +A+VG SGSGKSTVI LI RFYDP+ G + I+G D++ +N++ LRK+ ALV QEP
Sbjct: 1030 SAGKSLAVVGPSGSGKSTVIGLIMRFYDPSNGNLCIDGQDIKTLNLRSLRKKLALVQQEP 1089
Query: 1400 ALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQ 1459
ALF+ TI +NI GN AS AEI EAA+ A H+FI + +GY+T G+ GVQLSGGQKQ
Sbjct: 1090 ALFSTTIYENIKYGNENASEAEIMEAAKAANAHEFIIKMEEGYKTHAGDKGVQLSGGQKQ 1149
Query: 1460 RIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIREANM 1519
R+AIARA+LK VLLLDEA+SALD SEK VQ+AL K+ K TT++VAHRLSTIR+A+
Sbjct: 1150 RVAIARAVLKDPSVLLLDEATSALDTSSEKLVQEALDKLMKGRTTVLVAHRLSTIRKADT 1209
Query: 1520 IAVVRDGAVVEYGSHETLLASHLNGVYASL 1549
+AV+ G VVE GSH L+ S NG Y L
Sbjct: 1210 VAVLHKGRVVEKGSHRELV-SIPNGFYKQL 1238
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M1Q9|AB21B_ARATH ABC transporter B family member 21 OS=Arabidopsis thaliana GN=ABCB21 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 922 bits (2383), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 518/1244 (41%), Positives = 758/1244 (60%), Gaps = 17/1244 (1%)
Query: 325 EVAKPVGLFSLFKYSTKLDMILVLLGCIGALINGGALPWYSYFFGNFVNKIANESSDPDK 384
E K V LF ++ D+IL++LG IGA+ NG P + FG+ ++ + D
Sbjct: 58 EKTKTVPFHKLFAFADSFDIILMILGTIGAVGNGLGFPIMTILFGDVIDVFGQNQNSSDV 117
Query: 385 TQMMKDAEKICLLMTVLAAIVMMGAYLEITCWRLVGERSAQRIRTKYLRAVLRQDIAFFD 444
+ + K+ L L ++ A L+++ W + GER A RIR+ YL+ +LRQDIAFFD
Sbjct: 118 SDKIA---KVALKFVYLGLGTLVAALLQVSGWMISGERQAGRIRSLYLQTILRQDIAFFD 174
Query: 445 TEVSTSDIMHGISSDIAQIQEVMGEKVAHFAHNIFTFICGYTVGFLRSWKVSLVVLSVTP 504
E +T +++ +S D IQ+ MGEKV + TFI G+ + F W ++LV++S P
Sbjct: 175 VETNTGEVVGRMSGDTVLIQDAMGEKVGKAIQLVSTFIGGFVIAFTEGWLLTLVMVSSIP 234
Query: 505 LMMFCGMAYKAVYVGLTSKEEASYRRAGSVAEQAISSIRTVFSFVAEDHFAVRYAGLLAD 564
L++ G A V + S+ + SY +A V EQ + SIRTV SF E Y L
Sbjct: 235 LLVMSGAALAIVISKMASRGQTSYAKAAVVVEQTVGSIRTVASFTGEKQAISNYNKHLVS 294
Query: 565 SIPFGAKLGFAKGAGMGVIYLVTYATWALAFWYGSILVARKELSGGAAIACFFGVNVGGR 624
+ G G + G G+G + +V + T+ALA WYG ++ K +GG + F V G
Sbjct: 295 AYRAGVFEGASTGLGLGTLNIVIFCTYALAVWYGGKMILEKGYTGGQVLIIIFAVLTGSM 354
Query: 625 GLALSLSYFAQFAQGTVAATRVFEIIDRVPEIDPYNSEGRKLSSVSGKIEFKGVTFAYPS 684
L + + FA G AA ++FE I R PEID ++ G+ L + G IE V F+YP+
Sbjct: 355 SLGQASPCLSAFAAGQAAAYKMFEAIKRKPEIDASDTTGKVLDDIRGDIELNNVNFSYPA 414
Query: 685 RPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQV 744
RPE I R +L I S T+ALVG SG GKSTV +LIERFYDP G + +DG +LK Q+
Sbjct: 415 RPEEQIFRGFSLSISSGSTVALVGQSGSGKSTVVSLIERFYDPQSGEVRIDGINLKEFQL 474
Query: 745 KWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQ 804
KW+R++IG+V QEP+LF +SI EN+ GKENAT++E A + A+A FI +LP G DT
Sbjct: 475 KWIRSKIGLVSQEPVLFTSSIKENIAYGKENATVEEIRKATELANASKFIDKLPQGLDTM 534
Query: 805 VGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTI 864
VG+ GTQLSGGQKQRIA+ARA++KDPRILLLDE TSALD+ESE IVQ+A+D+I V RTT+
Sbjct: 535 VGEHGTQLSGGQKQRIAVARAILKDPRILLLDEATSALDAESERIVQEALDRIMVNRTTV 594
Query: 865 VIAHRLATVKNANTIVVLDQGSVVEIGNHRQLL-ERGGAYHDLVKLASEAVSQPQS--KQ 921
V+AHRL+TV+NA+ I V+ QG +VE G+H +LL + GAY L++L + S +Q
Sbjct: 595 VVAHRLSTVRNADMIAVIHQGKIVEKGSHSELLRDPEGAYSQLIRLQEDTKQTEDSTDEQ 654
Query: 922 KDAKRGIEFSIYEKSVIEVSRSRYANEVSKSKYFKSMQAEIQTVEEEQQKP----RPRKF 977
K + ++ S KS + S S+ ++ S + + + + E+ K + +K
Sbjct: 655 KLSMESMKRSSLRKSSLSRSLSKRSSSFSMFGFPAGIDTNNEAIPEKDIKVSTPIKEKKV 714
Query: 978 QLSEIWKLQRPEFAMIIFGFILGMHAGAILSIFPLILGQALQVYFDDTASTLRRDVRYLS 1037
+ L +PE M+I G I + G IL IF +++ ++ +F L+ D R+ +
Sbjct: 715 SFFRVAALNKPEIPMLILGSIAAVLNGVILPIFGILISSVIKAFF-KPPEQLKSDTRFWA 773
Query: 1038 LALVGLGFGCIIFMTGQQGFCGWAGTKLTMRVRELLFRSILKQEPGWFDFEENSTGVLVS 1097
+ + LG ++ Q F AG KL R+R + F +++ E GWFD ENS+G + +
Sbjct: 774 IIFMLLGVASMVVFPAQTIFFSIAGCKLVQRIRSMCFEKVVRMEVGWFDETENSSGAIGA 833
Query: 1098 RLSIDSISFRSVLGDRFSVLLMGLSSAAVGLGVSLVLNWRLTLVAAALTPFTLGASYLSL 1157
RLS D+ + R ++GD + + L+S GL ++ V +W+L + A+ P Y+ +
Sbjct: 834 RLSADAATVRGLVGDALAQTVQNLASVTAGLVIAFVASWQLAFIVLAMLPLIGLNGYIYM 893
Query: 1158 IINVGPKID-NSSYAKASSIASGAVSNIRTVTTFSAQEQIINSFDKALSEPKKKSVKRSQ 1216
VG D Y +AS +A+ AV +IRTV +F A+E+++ + K P + +++
Sbjct: 894 KFMVGFSADAKRMYEEASQVANDAVGSIRTVASFCAEEKVMKMYKKKCEGPMRTGIRQGI 953
Query: 1217 ILGLTLGFSQGAMYVAYTFTLWFGAYLVKQGHASFGVVYKIFLILVLSSFSVGQLAGLAP 1276
+ G+ G S ++ +Y + + GA LV G +F V+++F L +++ ++ Q + L+P
Sbjct: 954 VSGIGFGVSFFVLFSSYAASFYAGARLVDDGKTTFDSVFRVFFALTMAAVAISQSSSLSP 1013
Query: 1277 DTSMAATAIPAVLQITKRKPLID--NVKGRKLERSKPLGIELKMVTFTYPSRPEVTVLKD 1334
D+S A+ A ++ + R+ ID + GR L+ K IEL+ ++F YPSRP+V + +D
Sbjct: 1014 DSSKASNAAASIFAVIDRESKIDPSDESGRVLDNVKG-DIELRHISFKYPSRPDVQIFQD 1072
Query: 1335 FCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTAL 1394
CL ++ G +ALVG SGSGKSTVI L+QRFYDP+ G++ ++GV+++ + +KWLR+QT L
Sbjct: 1073 LCLSIRAGKTIALVGESGSGKSTVIALLQRFYDPDSGQITLDGVEIKTLQLKWLRQQTGL 1132
Query: 1395 VGQEPALFAGTIRDNIALGN-PKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQL 1453
V QEP LF TIR NIA G A+ EI AAE + H FIS L QGY+T VGE GVQL
Sbjct: 1133 VSQEPVLFNETIRANIAYGKGGDATETEIVSAAELSNAHGFISGLQQGYDTMVGERGVQL 1192
Query: 1454 SGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLST 1513
SGGQKQR+AIARAI+K +VLLLDEA+SALD ESE+ VQDAL +V TT+VVAHRLST
Sbjct: 1193 SGGQKQRVAIARAIVKDPKVLLLDEATSALDAESERVVQDALDRVMVNRTTVVVAHRLST 1252
Query: 1514 IREANMIAVVRDGAVVEYGSHETLLASHLNGVYASLVRAETEAN 1557
I+ A++IAVV++G +VE G HETL+ +GVYASLV+ A+
Sbjct: 1253 IKNADVIAVVKNGVIVEKGKHETLINIK-DGVYASLVQLHLSAS 1295
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O80725|AB4B_ARATH ABC transporter B family member 4 OS=Arabidopsis thaliana GN=ABCB4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 921 bits (2380), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 520/1244 (41%), Positives = 756/1244 (60%), Gaps = 32/1244 (2%)
Query: 330 VGLFSLFKYSTKLDMILVLLGCIGALINGGALPWYSYFFGNFVNKIA-NESSDPDKTQMM 388
V + LF ++ D +L++LG +G++ NG P + FG+ ++ N+++ DK
Sbjct: 46 VPFYKLFAFADSFDFLLMILGTLGSIGNGLGFPLMTLLFGDLIDAFGENQTNTTDKVS-- 103
Query: 389 KDAEKICLLMTVLAAIVMMGAYLEITCWRLVGERSAQRIRTKYLRAVLRQDIAFFDTEVS 448
K+ L L A+L+++ W + GER A RIR+ YL+ +LRQDIAFFD + +
Sbjct: 104 ----KVALKFVWLGIGTFAAAFLQLSGWMISGERQAARIRSLYLKTILRQDIAFFDIDTN 159
Query: 449 TSDIMHGISSDIAQIQEVMGEKVAHFAHNIFTFICGYTVGFLRSWKVSLVVLSVTPLMMF 508
T +++ +S D IQ+ MGEKV + TF+ G+ + F+R W ++LV+LS PL++
Sbjct: 160 TGEVVGRMSGDTVLIQDAMGEKVGKAIQLLATFVGGFVIAFVRGWLLTLVMLSSIPLLVM 219
Query: 509 CGMAYKAVYVGLTSKEEASYRRAGSVAEQAISSIRTVFSFVAEDHFAVRYAGLLADSIPF 568
G V S+ + +Y +A +V EQ I SIRTV SF E Y L +
Sbjct: 220 AGALLAIVIAKTASRGQTAYAKAATVVEQTIGSIRTVASFTGEKQAISNYNKHLVTAYKA 279
Query: 569 GAKLGFAKGAGMGVIYLVTYATWALAFWYGSILVARKELSGGAAIACFFGVNVGGRGLAL 628
G G + G G+G ++LV + ++ALA WYG L+ K +GG + V G L
Sbjct: 280 GVIEGGSTGLGLGTLFLVVFCSYALAVWYGGKLILDKGYTGGQVLNIIIAVLTGSMSLGQ 339
Query: 629 SLSYFAQFAQGTVAATRVFEIIDRVPEIDPYNSEGRKLSSVSGKIEFKGVTFAYPSRPET 688
+ + FA G AA ++FE I+R P ID Y++ G+ L + G IE K V F YP+RP+
Sbjct: 340 TSPCLSAFAAGQAAAYKMFETIERRPNIDSYSTNGKVLDDIKGDIELKDVYFTYPARPDE 399
Query: 689 VILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLR 748
I R +L I S T+ALVG SG GKSTV +LIERFYDP G + +DG +LK Q+KW+R
Sbjct: 400 QIFRGFSLFISSGTTVALVGQSGSGKSTVVSLIERFYDPQAGDVLIDGINLKEFQLKWIR 459
Query: 749 TQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDR 808
++IG+V QEP+LF SI +N+ GKE+AT +E AA + A+A F+ +LP G DT VG+
Sbjct: 460 SKIGLVSQEPVLFTASIKDNIAYGKEDATTEEIKAAAELANASKFVDKLPQGLDTMVGEH 519
Query: 809 GTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAH 868
GTQLSGGQKQRIA+ARA++KDPRILLLDE TSALD+ESE +VQ+A+D+I V RTT+V+AH
Sbjct: 520 GTQLSGGQKQRIAVARAILKDPRILLLDEATSALDAESERVVQEALDRIMVNRTTVVVAH 579
Query: 869 RLATVKNANTIVVLDQGSVVEIGNHRQLL-ERGGAYHDLVKLASEAVSQPQSKQKDAKRG 927
RL+TV+NA+ I V+ QG +VE G+H +LL + GAY L++L E S + ++
Sbjct: 580 RLSTVRNADMIAVIHQGKIVEKGSHTELLKDPEGAYSQLIRLQEEKKSDENAAEEQKMSS 639
Query: 928 IEFSIYEKSVIEVSRSRYANEVSKSKYFKSMQA-------------EIQTVEEE---QQK 971
IE S + S+ + S R ++ S+ S + +Q EE+ Q K
Sbjct: 640 IE-SFKQSSLRKSSLGRSLSKGGSSRGNSSRHSFNMFGFPAGIDGNVVQDQEEDDTTQPK 698
Query: 972 PRPRKFQLSEIWKLQRPEFAMIIFGFILGMHAGAILSIFPLILGQALQVYFDDTASTLRR 1031
P+K + I L +PE ++I G I G IL IF +++ ++ +F L+
Sbjct: 699 TEPKKVSIFRIAALNKPEIPVLILGSISAAANGVILPIFGILISSVIKAFF-QPPKKLKE 757
Query: 1032 DVRYLSLALVGLGFGCIIFMTGQQGFCGWAGTKLTMRVRELLFRSILKQEPGWFDFEENS 1091
D + ++ + LGF II Q F AG KL R+R + F ++ E GWFD ENS
Sbjct: 758 DTSFWAIIFMVLGFASIIAYPAQTFFFAIAGCKLVQRIRSMCFEKVVHMEVGWFDEPENS 817
Query: 1092 TGVLVSRLSIDSISFRSVLGDRFSVLLMGLSSAAVGLGVSLVLNWRLTLVAAALTPFTLG 1151
+G + +RLS D+ + R ++GD + + LSS GL ++ + W+L V A+ P
Sbjct: 818 SGTIGARLSADAATIRGLVGDSLAQTVQNLSSILAGLIIAFLACWQLAFVVLAMLPLIAL 877
Query: 1152 ASYLSLIINVGPKID-NSSYAKASSIASGAVSNIRTVTTFSAQEQIINSFDKALSEPKKK 1210
+L + G D Y +AS +A+ AV +IRTV +F A+++++N + K P K
Sbjct: 878 NGFLYMKFMKGFSADAKKMYGEASQVANDAVGSIRTVASFCAEDKVMNMYSKKCEGPMKN 937
Query: 1211 SVKRSQILGLTLGFSQGAMYVAYTFTLWFGAYLVKQGHASFGVVYKIFLILVLSSFSVGQ 1270
+++ + G+ GFS ++ +Y + + GA LV G +F V+++F L +++ ++ Q
Sbjct: 938 GIRQGIVSGIGFGFSFFVLFSSYAASFYVGARLVDDGKTTFDSVFRVFFALTMAAMAISQ 997
Query: 1271 LAGLAPDTSMAATAIPAVLQITKRKPLIDNV--KGRKLERSKPLGIELKMVTFTYPSRPE 1328
+ L+PD+S A A ++ I R+ ID GR L+ K IEL+ V+F YP+RP+
Sbjct: 998 SSSLSPDSSKADVAAASIFAIMDRESKIDPSVESGRVLDNVKG-DIELRHVSFKYPARPD 1056
Query: 1329 VTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWL 1388
V + +D CL ++ G VALVG SGSGKSTVI L+QRFYDP+ G++ ++GV+++ + +KWL
Sbjct: 1057 VQIFQDLCLSIRAGKTVALVGESGSGKSTVIALLQRFYDPDSGEITLDGVEIKSLRLKWL 1116
Query: 1389 RKQTALVGQEPALFAGTIRDNIALGN-PKASWAEIEEAAEEAYIHKFISSLPQGYETQVG 1447
R+QT LV QEP LF TIR NIA G AS +EI +AE + H FIS L QGY+T VG
Sbjct: 1117 RQQTGLVSQEPILFNETIRANIAYGKGGDASESEIVSSAELSNAHGFISGLQQGYDTMVG 1176
Query: 1448 ESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVV 1507
E G+QLSGGQKQR+AIARAI+K +VLLLDEA+SALD ESE+ VQDAL +V TTIVV
Sbjct: 1177 ERGIQLSGGQKQRVAIARAIVKDPKVLLLDEATSALDAESERVVQDALDRVMVNRTTIVV 1236
Query: 1508 AHRLSTIREANMIAVVRDGAVVEYGSHETLLASHLNGVYASLVR 1551
AHRLSTI+ A++IAVV++G +VE G H+TL+ +GVYASLV+
Sbjct: 1237 AHRLSTIKNADVIAVVKNGVIVEKGKHDTLINIK-DGVYASLVQ 1279
|
Auxin influx transporter that mediates the transport of auxin in roots. Contributes to the basipetal transport in hypocotyls and root tips by establishing an auxin uptake sink in the root cap. Confers sensitivity to 1-N-naphthylphthalamic acid (NPA). Regulates the root elongation, the initiation of lateral roots and the development of root hairs. Can transports IAA, indole-3-propionic acid, NPA syringic acid, vanillic acid and some auxin metabolites, but not 2,4-D and 1-naphthaleneacetic acid. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1560 | ||||||
| 224119620 | 1547 | multidrug/pheromone exporter, MDR family | 0.976 | 0.984 | 0.724 | 0.0 | |
| 359482355 | 1542 | PREDICTED: ABC transporter B family memb | 0.978 | 0.989 | 0.715 | 0.0 | |
| 255576583 | 1580 | multidrug resistance protein 1, 2, putat | 0.985 | 0.973 | 0.707 | 0.0 | |
| 356560185 | 1515 | PREDICTED: ABC transporter B family memb | 0.949 | 0.977 | 0.667 | 0.0 | |
| 357514163 | 1488 | ABC transporter B family member [Medicag | 0.789 | 0.827 | 0.749 | 0.0 | |
| 449480670 | 1450 | PREDICTED: ABC transporter B family memb | 0.784 | 0.844 | 0.752 | 0.0 | |
| 449448128 | 1450 | PREDICTED: ABC transporter B family memb | 0.784 | 0.844 | 0.752 | 0.0 | |
| 297742960 | 1140 | unnamed protein product [Vitis vinifera] | 0.691 | 0.946 | 0.711 | 0.0 | |
| 357120542 | 1471 | PREDICTED: ABC transporter B family memb | 0.787 | 0.835 | 0.644 | 0.0 | |
| 414588090 | 1517 | TPA: hypothetical protein ZEAMMB73_03577 | 0.828 | 0.851 | 0.605 | 0.0 |
| >gi|224119620|ref|XP_002331205.1| multidrug/pheromone exporter, MDR family, ABC transporter family [Populus trichocarpa] gi|222873326|gb|EEF10457.1| multidrug/pheromone exporter, MDR family, ABC transporter family [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 2192 bits (5681), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1146/1581 (72%), Positives = 1299/1581 (82%), Gaps = 58/1581 (3%)
Query: 2 ESSFEIDHSSF---HTYHPQ----HHTTPIRSHYGSSSPSPFNSRYLSSRNPTPHRVRRR 54
+SSFEID+ S YH + H +TP+ S Y S S + F S TP+R+R+
Sbjct: 3 DSSFEIDYHSTGRSRNYHQRRQLRHPSTPVNSQYDSRSFTQF------SFTNTPNRLRQ- 55
Query: 55 APATPFAADDDISWQGEVSWQVEPSGWRDSRNLGAALSPWALSTPSNINAFRRSAKDFYL 114
P+TPFA D+D SWQ E+SWQ +P+GW D+R+LGAALSPWA STPSN + F+RSA D+YL
Sbjct: 56 TPSTPFATDNDTSWQDELSWQFQPTGWNDTRSLGAALSPWAASTPSNRHIFQRSANDYYL 115
Query: 115 SRTSGGLRSFANPYYDYPSHSGVPSGRLELHSYVARDNN-SFLRSKKNKLGDHRKSHQGI 173
SRT GG R+F NPYYD S+ VP+GRLEL SY AR+N S + + + KSH GI
Sbjct: 116 SRTHGGFRTFTNPYYDQSSYGAVPAGRLELQSYAARNNERSVVHVRDYSSAAYSKSHHGI 175
Query: 174 PR---LGKIEGTSRPVSPLATEDELSMIDYDTLDHVERQVHLSGTNHNPHKHDDPRWFSV 230
R G R SPL +DELSMIDYD+ D VE+Q L T+ N H D RW SV
Sbjct: 176 SRPISQAIKGGARRNASPLVDQDELSMIDYDSED-VEKQGELLQTDTNLHGDKDSRWISV 234
Query: 231 SRAYMDDDDVFSHFHNHHGSSDGKHNNNVHELSQNGHDHGGHHRMSYKMDNLDDEFLHGH 290
S AYM+DD V +H+ + G H+++ HELS++ HD D L
Sbjct: 235 SHAYMEDDGVSPLYHS---TPHGGHDHHGHELSRSRHD-----------DLLS------- 273
Query: 291 RGHDAWLSTSHHYGGGDGRNNDPELVSPYNEDDAEVA---------KPVGLFSLFKYSTK 341
++A STS Y G +D + S Y ++D + + VGLFSLFKYSTK
Sbjct: 274 -AYEANRSTSRDYVPGKYPYDDIDQASEYEDEDYDEEDDDNEEAARRQVGLFSLFKYSTK 332
Query: 342 LDMILVLLGCIGALINGGALPWYSYFFGNFVNKIANESSDPDKTQMMKDAEKICLLMTVL 401
DM+LV LGC+GALINGG+LPWYSYFFG+FVN+IA S D MMK+ E+ICLLMT +
Sbjct: 333 WDMVLVFLGCLGALINGGSLPWYSYFFGDFVNRIAKHSDD----NMMKEVERICLLMTGV 388
Query: 402 AAIVMMGAYLEITCWRLVGERSAQRIRTKYLRAVLRQDIAFFDTEVSTSDIMHGISSDIA 461
AA+V++GAYLEITCWRLVGERSA RIR YL AVLRQDI F+DT+VSTSDIMHGISSD+A
Sbjct: 389 AALVVVGAYLEITCWRLVGERSAHRIRNLYLSAVLRQDITFYDTKVSTSDIMHGISSDVA 448
Query: 462 QIQEVMGEKVAHFAHNIFTFICGYTVGFLRSWKVSLVVLSVTPLMMFCGMAYKAVYVGLT 521
QIQEVMGEK+AHF H+IFTFICGY VGFLRSWKVSLVVLSVTPL MFCG+AYKA+YVGL
Sbjct: 449 QIQEVMGEKMAHFIHHIFTFICGYWVGFLRSWKVSLVVLSVTPLTMFCGIAYKAIYVGLA 508
Query: 522 SKEEASYRRAGSVAEQAISSIRTVFSFVAEDHFAVRYAGLLADSIPFGAKLGFAKGAGMG 581
+KEE SYR+AG VAEQAISSIRTVFSFVAED A +YA LL S+P GAK+GFAKGAGMG
Sbjct: 509 TKEEVSYRKAGGVAEQAISSIRTVFSFVAEDKLARKYADLLMKSVPIGAKIGFAKGAGMG 568
Query: 582 VIYLVTYATWALAFWYGSILVARKELSGGAAIACFFGVNVGGRGLALSLSYFAQFAQGTV 641
VIYLVTY+TWALAFWYGSILVARKE+SGG AIACFFGVNVGGRGLALSLSYFAQFAQGTV
Sbjct: 569 VIYLVTYSTWALAFWYGSILVARKEISGGDAIACFFGVNVGGRGLALSLSYFAQFAQGTV 628
Query: 642 AATRVFEIIDRVPEIDPYNSEGRKLSSVSGKIEFKGVTFAYPSRPETVILRSLNLVIPSS 701
AATRV+EIIDR+P+IDPY+ GR LS+V G+IE KGVTFAYPSRPETVILRSLNLVIPS+
Sbjct: 629 AATRVYEIIDRIPDIDPYSPHGRILSTVGGRIEIKGVTFAYPSRPETVILRSLNLVIPSA 688
Query: 702 KTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIGMVGQEPILF 761
KTLALVG SGGGKSTVFALIERFYDP G++TLDG+DL++LQVKWLR QIGMVGQEP+LF
Sbjct: 689 KTLALVGASGGGKSTVFALIERFYDPINGVVTLDGNDLRTLQVKWLRGQIGMVGQEPVLF 748
Query: 762 ATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIA 821
ATSILENV+MGKENAT KEA+ AC AA+AHSFIS LP GYDTQVGDRGTQLSGGQKQRIA
Sbjct: 749 ATSILENVMMGKENATKKEAINACIAANAHSFISGLPFGYDTQVGDRGTQLSGGQKQRIA 808
Query: 822 LARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKNANTIVV 881
LARAMIK+PRILLLDEPTSALD ESES+VQQAIDKIS GRTTIVIAHRLATV+NANTI V
Sbjct: 809 LARAMIKNPRILLLDEPTSALDQESESVVQQAIDKISTGRTTIVIAHRLATVRNANTIAV 868
Query: 882 LDQGSVVEIGNHRQLLERGGAYHDLVKLASEAVSQPQSKQKDAKRGIEFSIYEKSVIEVS 941
LDQGSVVEIG+HRQL+E GAY+DLVKLA+EAVS+ KQ+DA + +EFSIYEKSV
Sbjct: 869 LDQGSVVEIGDHRQLMENAGAYYDLVKLATEAVSKSALKQEDAAKDMEFSIYEKSVD--L 926
Query: 942 RSRYANEVSKSKYFKSMQAEIQTVEEEQQKPRPRKFQLSEIWKLQRPEFAMIIFGFILGM 1001
RS+ A E SKS+Y KSMQAE Q EE Q+ +PRK+QLSEIW LQRPE ++ GF+LGM
Sbjct: 927 RSKNAFETSKSRYLKSMQAENQQEEEMQESAKPRKYQLSEIWGLQRPEIVKLLLGFLLGM 986
Query: 1002 HAGAILSIFPLILGQALQVYFDDTASTLRRDVRYLSLALVGLGFGCIIFMTGQQGFCGWA 1061
HAGAILS+FP +LG+AL +YF+D L+RDV L L LVGLGFGCII MTGQQG CGWA
Sbjct: 987 HAGAILSVFPYLLGEALTIYFEDNKFKLKRDVGRLCLILVGLGFGCIISMTGQQGLCGWA 1046
Query: 1062 GTKLTMRVRELLFRSILKQEPGWFDFEENSTGVLVSRLSIDSISFRSVLGDRFSVLLMGL 1121
GTKLT+R+R+LLFRSILKQEPGWFDFEENS GVLVS+LSID ISFRSVLGDR SVLLMGL
Sbjct: 1047 GTKLTVRIRDLLFRSILKQEPGWFDFEENSVGVLVSKLSIDCISFRSVLGDRLSVLLMGL 1106
Query: 1122 SSAAVGLGVSLVLNWRLTLVAAALTPFTLGASYLSLIINVGPKIDNSSYAKASSIASGAV 1181
SSAAVGLG+S L WRL L+AAALTPFTLGASYLSLIINVGPK+DNSSYAKAS+IA+GAV
Sbjct: 1107 SSAAVGLGLSFYLQWRLALLAAALTPFTLGASYLSLIINVGPKLDNSSYAKASTIAAGAV 1166
Query: 1182 SNIRTVTTFSAQEQIINSFDKALSEPKKKSVKRSQILGLTLGFSQGAMYVAYTFTLWFGA 1241
S+IRTV TFSAQ+QI+ SFD+AL+EPKKKSVKRSQ+LGLTLGFSQGAMY AYT TLWFGA
Sbjct: 1167 SSIRTVATFSAQDQIVESFDRALAEPKKKSVKRSQVLGLTLGFSQGAMYGAYTLTLWFGA 1226
Query: 1242 YLVKQGHASFGVVYKIFLILVLSSFSVGQLAGLAPDTSMAATAIPAVLQITKRKPLI--D 1299
YLVKQG + GVVYKIFLILVLSSFSVGQLAGLAPDTSMAA AI A+ I RKPLI D
Sbjct: 1227 YLVKQGETNIGVVYKIFLILVLSSFSVGQLAGLAPDTSMAAPAIAAIFDIIHRKPLIRSD 1286
Query: 1300 NVKGRKLERSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVI 1359
+G+K++RS L IELKMVTF YPSRPE+ VL+DFCLKVKGGS VALVGGSGSGKSTV+
Sbjct: 1287 RDRGKKIDRSNLLDIELKMVTFAYPSRPEIIVLRDFCLKVKGGSTVALVGGSGSGKSTVV 1346
Query: 1360 WLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKASW 1419
WLIQRFYDPNQGKV + GVDLR+ NVKWLR QTALVGQEPALF+G+IR+NIA GNP AS
Sbjct: 1347 WLIQRFYDPNQGKVTMGGVDLRDFNVKWLRSQTALVGQEPALFSGSIRENIAFGNPNASR 1406
Query: 1420 AEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEA 1479
AEIEEAA EAYIHKFI SLPQGYETQVGESGVQLSGGQKQRIAIARAILK SRVLLLDEA
Sbjct: 1407 AEIEEAASEAYIHKFICSLPQGYETQVGESGVQLSGGQKQRIAIARAILKRSRVLLLDEA 1466
Query: 1480 SSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETLLA 1539
SSALDLESEK+VQ+ALRK+SKRATT++VAHRLSTIREA+MIAVV+DGAVVEYGSH+ LL
Sbjct: 1467 SSALDLESEKNVQEALRKISKRATTVIVAHRLSTIREADMIAVVKDGAVVEYGSHDALLN 1526
Query: 1540 SHLNGVYASLVRAETEANAFS 1560
SH NG+YAS+VRAETE NAF+
Sbjct: 1527 SHRNGLYASMVRAETETNAFA 1547
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482355|ref|XP_003632759.1| PREDICTED: ABC transporter B family member 19-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2182 bits (5655), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1125/1573 (71%), Positives = 1304/1573 (82%), Gaps = 47/1573 (2%)
Query: 2 ESSFEIDHS---SFHTYHPQHHTTPIRSHYGSSSPSPFNSRYLSSRNPTPHRVRRR-APA 57
+SSFE D S Y +H TP+RS++ SSS + F+ +S +N P R+R +PA
Sbjct: 3 DSSFETDFSLSGRSGNYRRRHRPTPVRSNHASSSFTWFSPLDMS-QNYYPRRLRHHPSPA 61
Query: 58 TPFAADDDISWQGEVSWQVEPSGWRDSRNLGAALSPWALSTPSNI--NAFRRSAKDFYLS 115
+PF+ D+D+SWQGE+SWQ EPSGW+D+RNLGA LSPW ++TPS+ +F+RSA D+YLS
Sbjct: 62 SPFSTDNDLSWQGELSWQFEPSGWQDNRNLGAVLSPW-IATPSSDRHQSFQRSANDYYLS 120
Query: 116 RTSGGLRSFANPYYDYPSHSGVPSGRLELHSYVARDNNSFLRSKKNKLGDHRKSHQGIPR 175
RT GG +SF NPYY+Y + VPS RLEL SYV D+ S + G++ +SH G P
Sbjct: 121 RTYGGFQSFTNPYYEYSGYGSVPSKRLELQSYVDGDHGSSFFGRHYTSGEYSRSH-GFPN 179
Query: 176 LGKI-EGTSRPVSPLATEDELSMIDYDTLDHVERQVHLSGTNHNPHKHDDPRWFSVSRAY 234
LG I EG+ PLA +DELS+I Y + + E Q+ L T+ H+H+DPRWFSVS AY
Sbjct: 180 LGSIKEGSPGHHGPLADKDELSLIKYTSPEESELQISLFETDLGHHQHEDPRWFSVSHAY 239
Query: 235 MDDDDVFSHFHNHHGSSDGKHNNNVHELSQNGHDHGGHHRMSYKMDNLDDEFLHGHRGHD 294
MD +D ++ NV +G H
Sbjct: 240 MDVED---------------NSVNVSHHHHDGGHGHHGHGYHDHG--------------- 269
Query: 295 AWLSTSHHYGGGDGRNNDPE----LVSPYNEDDAEVAKPVGLFSLFKYSTKLDMILVLLG 350
W STSHHY +G N++ + +EDD + VGLFSLF+YSTK D++LV+LG
Sbjct: 270 VWKSTSHHYDTDEGYNDNDQDSAYDEDEDDEDDGMAPRSVGLFSLFRYSTKSDILLVILG 329
Query: 351 CIGALINGGALPWYSYFFGNFVNKIANESSDPDKTQMMKDAEKICLLMTVLAAIVMMGAY 410
C+GALINGG+LPWYS FGNFVNKIA E DKT+MMKD ++I LLM LAAIV++GAY
Sbjct: 330 CLGALINGGSLPWYSLLFGNFVNKIAKEPDSNDKTEMMKDVQQISLLMAGLAAIVVVGAY 389
Query: 411 LEITCWRLVGERSAQRIRTKYLRAVLRQDIAFFDTEVSTSDIMHGISSDIAQIQEVMGEK 470
+EITCWR+VGERS+QRIRTKYLRAVLRQDI FFDT++ST +IMHGISSD+AQIQEVMGEK
Sbjct: 390 MEITCWRIVGERSSQRIRTKYLRAVLRQDIGFFDTQISTGNIMHGISSDVAQIQEVMGEK 449
Query: 471 VAHFAHNIFTFICGYTVGFLRSWKVSLVVLSVTPLMMFCGMAYKAVYVGLTSKEEASYRR 530
+AHF H++FTFICGY VGF RSWKVSLVVLSV PLMMFCG+AYKA+YVGLT+KEE SYR
Sbjct: 450 MAHFIHHVFTFICGYAVGFWRSWKVSLVVLSVIPLMMFCGIAYKAIYVGLTAKEEVSYRI 509
Query: 531 AGSVAEQAISSIRTVFSFVAEDHFAVRYAGLLADSIPFGAKLGFAKGAGMGVIYLVTYAT 590
AGSVAEQAISSIRTVFSFVAEDH A RYA LL S+PFG KLGFAKGAGMGVIYLVTY+T
Sbjct: 510 AGSVAEQAISSIRTVFSFVAEDHLAERYAELLQKSVPFGVKLGFAKGAGMGVIYLVTYST 569
Query: 591 WALAFWYGSILVARKELSGGAAIACFFGVNVGGRGLALSLSYFAQFAQGTVAATRVFEII 650
WALAFWYGSILVAR E+SGGAAIACFFGVN+GGRGLALSLSYFAQFAQGTVAA+RVFEII
Sbjct: 570 WALAFWYGSILVARGEISGGAAIACFFGVNLGGRGLALSLSYFAQFAQGTVAASRVFEII 629
Query: 651 DRVPEIDPYNSEGRKLSSVSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTS 710
DRVPEIDPY+ EGRKL S+ G+IEFKGVTFAYPSRP ILRSLNL +PSSKTLALVG+S
Sbjct: 630 DRVPEIDPYSPEGRKLPSIRGRIEFKGVTFAYPSRPTAAILRSLNLEVPSSKTLALVGSS 689
Query: 711 GGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVL 770
GGGKST+FALIERFYDP KG+ITLDGHD+++LQVKWLR QIGMVGQEP+LF TSILENV+
Sbjct: 690 GGGKSTIFALIERFYDPVKGIITLDGHDIRTLQVKWLRGQIGMVGQEPVLFTTSILENVM 749
Query: 771 MGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDP 830
MGKENAT KEA+AAC AA+AHSFIS LP GYDTQVGDRGTQLSGGQKQRIALARA+ DP
Sbjct: 750 MGKENATKKEAIAACVAANAHSFISGLPQGYDTQVGDRGTQLSGGQKQRIALARALTTDP 809
Query: 831 RILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEI 890
RILLLDEPTSALD ESES+VQQAIDKIS GRTT+VIAHRLATV+NA+TIVVL+ G+VVE
Sbjct: 810 RILLLDEPTSALDPESESVVQQAIDKISAGRTTLVIAHRLATVRNAHTIVVLNHGAVVET 869
Query: 891 GNHRQLLERGGAYHDLVKLASEAVSQPQSKQKDA-KRGIEFSIYEKSVIEVSRSRYANEV 949
GNH +L+E+ GAY++LVKLASEAVS+P SKQ + + + YE+SV EVS+S+Y NE
Sbjct: 870 GNHHKLMEKSGAYYNLVKLASEAVSKPLSKQDGSIIKATKLPSYERSVYEVSKSKYMNEA 929
Query: 950 SKSKYFKSMQAEIQTVEEEQQKPRPRKFQLSEIWKLQRPEFAMIIFGFILGMHAGAILSI 1009
S+SKY SMQ + + EEE+ +P+P K +SEI+KLQRPE M++ GF+LGMHAGAILSI
Sbjct: 930 SRSKYLTSMQEQYKEEEEEKPEPKPGKVLVSEIFKLQRPELLMLLLGFLLGMHAGAILSI 989
Query: 1010 FPLILGQALQVYFDDTASTLRRDVRYLSLALVGLGFGCIIFMTGQQGFCGWAGTKLTMRV 1069
FP ILG ALQ+YF D S ++R+V LSL +VGLGFGC+I + GQQGFCGWAGTKLT RV
Sbjct: 990 FPFILGLALQIYFGDDTSKMKREVGVLSLVIVGLGFGCVITLVGQQGFCGWAGTKLTKRV 1049
Query: 1070 RELLFRSILKQEPGWFDFEENSTGVLVSRLSIDSISFRSVLGDRFSVLLMGLSSAAVGLG 1129
R+ LFRSILKQEPGWFDF++NSTGVLVSRLSID ++FRSVLGDRFSVLL GLSSAAVGLG
Sbjct: 1050 RDRLFRSILKQEPGWFDFDDNSTGVLVSRLSIDCVTFRSVLGDRFSVLLTGLSSAAVGLG 1109
Query: 1130 VSLVLNWRLTLVAAALTPFTLGASYLSLIINVGPKIDNSSYAKASSIASGAVSNIRTVTT 1189
+S L+WRLTL+AAALTP TLGASY SLIINVGP++DNSSYA+AS+IA+GAVSNIRTVTT
Sbjct: 1110 ISFFLDWRLTLLAAALTPLTLGASYFSLIINVGPRLDNSSYARASNIAAGAVSNIRTVTT 1169
Query: 1190 FSAQEQIINSFDKALSEPKKKSVKRSQILGLTLGFSQGAMYVAYTFTLWFGAYLVKQGHA 1249
FSAQ+Q++++FD+ALSEPKKKSVKRSQ+LGL LGFSQGAMY AYT TLWFG YL+K+ A
Sbjct: 1170 FSAQQQLVHTFDQALSEPKKKSVKRSQVLGLALGFSQGAMYGAYTLTLWFGTYLIKEDKA 1229
Query: 1250 SFGVVYKIFLILVLSSFSVGQLAGLAPDTSMAATAIPAVLQITKRKPLI--DNVKGRKLE 1307
+FG V+KIFLILV+SSFSVGQLAGLAPDTSMAATA+PAV I R+P+I D KGRK+E
Sbjct: 1230 NFGDVFKIFLILVMSSFSVGQLAGLAPDTSMAATAVPAVFSIINRRPMISSDGEKGRKVE 1289
Query: 1308 RSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYD 1367
RSKP+ +ELKMVTF YPSRPEVTVL++FCLKVKGGSMVALVGGSGSGKSTV+WLIQRFYD
Sbjct: 1290 RSKPVDVELKMVTFAYPSRPEVTVLREFCLKVKGGSMVALVGGSGSGKSTVVWLIQRFYD 1349
Query: 1368 PNQGKVMIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAE 1427
PNQGKV++ GVD++E+NVKWLR+Q ALVGQEPALFAG+IR+NIA GNP ASWAEIEEAA
Sbjct: 1350 PNQGKVLMGGVDIKEMNVKWLRRQIALVGQEPALFAGSIRENIAFGNPNASWAEIEEAAN 1409
Query: 1428 EAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLES 1487
EAYIHKFISSLPQGYETQVGESG QLSGGQKQRIAIARAILK S+VLLLDEASSALDLES
Sbjct: 1410 EAYIHKFISSLPQGYETQVGESGAQLSGGQKQRIAIARAILKKSKVLLLDEASSALDLES 1469
Query: 1488 EKHVQDALRKVSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETLLASHLNGVYA 1547
EKHVQDALRKVS+RATTIVVAHRLSTIREA+MIAVV+DGAV EYGSH+TLLASHLNGVYA
Sbjct: 1470 EKHVQDALRKVSERATTIVVAHRLSTIREAHMIAVVKDGAVTEYGSHDTLLASHLNGVYA 1529
Query: 1548 SLVRAETEANAFS 1560
SLVRAETEA+AFS
Sbjct: 1530 SLVRAETEASAFS 1542
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255576583|ref|XP_002529182.1| multidrug resistance protein 1, 2, putative [Ricinus communis] gi|223531360|gb|EEF33196.1| multidrug resistance protein 1, 2, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 2128 bits (5513), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1131/1599 (70%), Positives = 1294/1599 (80%), Gaps = 61/1599 (3%)
Query: 2 ESSFEIDHSSFHT-------------YHPQHHTTPIRSHYGSSSPSPFNSRYLSSRNPTP 48
+SSFEID +S+++ +H TTP +Y S S + F S S T
Sbjct: 3 DSSFEIDSNSYYSGGVSSRNYHHHHSRQRRHSTTPTSLYYASPSITHFTSTDTSRSFTTS 62
Query: 49 HRVRRRAP--ATPFAADDDISWQGEVSWQVEPSGWRDSRNLGAALSPWALSTPS-NINAF 105
R+RR P +TPFAADDD SWQ EVSWQ E SGW+D+R LGA SPWA + PS NI F
Sbjct: 63 RRIRRPLPPPSTPFAADDDRSWQSEVSWQFESSGWQDNRYLGAVFSPWAATVPSSNIRVF 122
Query: 106 RRSAKDFYLSRTSGGLRSFANPYYD--YPSHSGVPS-GRLELHSYVARDNNS---FLRSK 159
RRSA D+YLS T RSF NP+YD Y S+S VPS GRLEL S+VARDNN + K
Sbjct: 123 RRSANDYYLSHT----RSFINPHYDHYYSSYSAVPSSGRLELQSHVARDNNDQSLVVHVK 178
Query: 160 KNKLGDHRKSHQGIPRLG--KIEGTSRPVSPLATEDELSMIDYDTL--DHVERQVHL-SG 214
+ GIPRL K + + SPLA DELS+ +Y+T + V+R++ L S
Sbjct: 179 NYNNDSNNNKISGIPRLDDHKKKESVGKFSPLAALDELSVTEYNTAHDEDVDREIGLLSE 238
Query: 215 TNH-NPHKHDDPRWFSVSRAYMDDDDVFSHFHNHHG----SSDGKHNNNVHELSQNGHDH 269
T+ N H + RW SVS AY+D + HG +S G + + Q+ H
Sbjct: 239 TDQSNVHGGKNTRWLSVSNAYVDVE---------HGGITQASPGMSHGRKYSHHQHDHHS 289
Query: 270 GGHHRMSYKMDNLDDEFLHGHRGHDAWLSTSHHYGGGD--GRNNDPELVSPYNEDDAEVA 327
G H + D LH H + H YG D R+ D + +++ +
Sbjct: 290 GKQHMRHHIYDAYQSPSLHSHGA-----KSDHGYGDTDQNSRSVDDDDGDDDYDEEEDEE 344
Query: 328 KP---VGLFSLFKYSTKLDMILVLLGCIGALINGGALPWYSYFFGNFVNKIANESSDPDK 384
+P VGLF LFKYSTK D++LV+LGC+GALINGGALPWYS+ FG+FVNKIA + +
Sbjct: 345 EPPRQVGLFGLFKYSTKWDIVLVILGCLGALINGGALPWYSFLFGDFVNKIAKGTDN--N 402
Query: 385 TQMMKDAEKICLLMTVLAAIVMMGAYLEITCWRLVGERSAQRIRTKYLRAVLRQDIAFFD 444
TQMMKD EKICL MTVLAAIV++GAYLEITCWRLVGERSA RIRT YLRAVLRQDI+F+D
Sbjct: 403 TQMMKDVEKICLEMTVLAAIVVVGAYLEITCWRLVGERSAHRIRTMYLRAVLRQDISFYD 462
Query: 445 TEVSTSDIMHGISSDIAQIQEVMGEKVAHFAHNIFTFICGYTVGFLRSWKVSLVVLSVTP 504
TEVST D+MHGISSD+AQIQEVMGEK+AHF H IFTFICGYTVGFLRSWKVSLVV SVTP
Sbjct: 463 TEVSTGDVMHGISSDVAQIQEVMGEKMAHFVHQIFTFICGYTVGFLRSWKVSLVVFSVTP 522
Query: 505 LMMFCGMAYKAVYVGLTSKEEASYRRAGSVAEQAISSIRTVFSFVAEDHFAVRYAGLLAD 564
LMMFCGMAYK +YVGL +KEEASYR+AG +AEQAISSIRTVFSFVAED+ A +YA L
Sbjct: 523 LMMFCGMAYKVIYVGLATKEEASYRKAGGIAEQAISSIRTVFSFVAEDNLAEKYADFLFK 582
Query: 565 SIPFGAKLGFAKGAGMGVIYLVTYATWALAFWYGSILVARKELSGGAAIACFFGVNVGGR 624
S+P GAK+GFAKGAGMGVIYLVTY+TWALAFWYGSILVAR E++GG+AIACFFGVNVGGR
Sbjct: 583 SVPIGAKVGFAKGAGMGVIYLVTYSTWALAFWYGSILVARGEITGGSAIACFFGVNVGGR 642
Query: 625 GLALSLSYFAQFAQGTVAATRVFEIIDRVPEIDPYNSEGRKLSSVSGKIEFKGVTFAYPS 684
GLALSL+YFAQFAQGTVAA+RV+EIIDR+P+IDPY S GR L +V G+IEFK V F+YPS
Sbjct: 643 GLALSLTYFAQFAQGTVAASRVYEIIDRIPDIDPYGSHGRTLPNVRGRIEFKSVIFSYPS 702
Query: 685 RPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQV 744
RP+T+ILRSLNLVIPSSKT+ALVGTSGGGKST+FALIERFYDP KG+ITLDGHDLK+LQV
Sbjct: 703 RPDTLILRSLNLVIPSSKTVALVGTSGGGKSTIFALIERFYDPIKGVITLDGHDLKTLQV 762
Query: 745 KWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQ 804
KWLR QIGMVGQEP+LFATSILENV+MGKENAT KEA+ AC AA+AHSFIS L GYDTQ
Sbjct: 763 KWLRDQIGMVGQEPVLFATSILENVMMGKENATEKEAINACIAANAHSFISGLTYGYDTQ 822
Query: 805 VGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTI 864
VGDRGTQLSGGQKQRIALARA+IKDP ILLLDEPTSALD+ESESIVQQAIDKIS GRTTI
Sbjct: 823 VGDRGTQLSGGQKQRIALARAIIKDPHILLLDEPTSALDAESESIVQQAIDKISTGRTTI 882
Query: 865 VIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLERGGAYHDLVKLASEAVSQPQSKQKDA 924
VIAHRLATV+NAN IVVLD GSVVEIGNHRQL+++ GAY+DLVKLASEAVS+P +K+ D
Sbjct: 883 VIAHRLATVRNANIIVVLDHGSVVEIGNHRQLMDKAGAYYDLVKLASEAVSRPTAKEMDT 942
Query: 925 KRGIEFSIYEKSVIEVSRSRYANEVSKSKYFKSMQAEIQTVEEEQQKPRPRKFQLSEIWK 984
+ EFSI+ KSV + RS+ E S+S++ K MQ E Q EE Q+K +PRK+ LSEIWK
Sbjct: 943 SKETEFSIHGKSVHD-PRSKNVEETSRSRHLKFMQMENQEEEEMQEKQKPRKYHLSEIWK 1001
Query: 985 LQRPEFAMIIFGFILGMHAGAILSIFPLILGQALQVYF-DDTASTLRRDVRYLSLALVGL 1043
LQRPE M++ GF+LGMHAGAILS+FP +LG ALQ+YF DD + L+RDV +++L LVGL
Sbjct: 1002 LQRPEVVMLLLGFLLGMHAGAILSVFPFLLGLALQIYFDDDNPAKLKRDVGHIALVLVGL 1061
Query: 1044 GFGCIIFMTGQQGFCGWAGTKLTMRVRELLFRSILKQEPGWFDFEENSTGVLVSRLSIDS 1103
G GCI+ MTGQQG CGWAGTKLT+RVR LLFRSILKQEPGWFDFEENSTGVLVSRLSID
Sbjct: 1062 GVGCILTMTGQQGLCGWAGTKLTIRVRNLLFRSILKQEPGWFDFEENSTGVLVSRLSIDC 1121
Query: 1104 ISFRSVLGDRFSVLLMGLSSAAVGLGVSLVLNWRLTLVAAALTPFTLGASYLSLIINVGP 1163
ISFRSVLGDR SVLLMGLSSAAVGLG+S L WRLTL+AAALTPFTLGASYLSLIINVGP
Sbjct: 1122 ISFRSVLGDRLSVLLMGLSSAAVGLGMSFFLEWRLTLLAAALTPFTLGASYLSLIINVGP 1181
Query: 1164 KIDNSSYAKASSIASGAVSNIRTVTTFSAQEQIINSFDKALSEPKKKSVKRSQILGLTLG 1223
K+DNSSYAKAS+IA+GAVSNIRTVTTFSAQEQI+ SFD+AL EPKKKSV+RSQ+LGLTLG
Sbjct: 1182 KLDNSSYAKASNIAAGAVSNIRTVTTFSAQEQIVRSFDRALDEPKKKSVRRSQVLGLTLG 1241
Query: 1224 FSQGAMYVAYTFTLWFGAYLVKQGHASFGVVYKIFLILVLSSFSVGQLAGLAPDTSMAAT 1283
FSQGAMY AYT TLWFGAYLVKQG FG VYKIFLILVLSSFSVGQLAGLAPDT+MA T
Sbjct: 1242 FSQGAMYGAYTLTLWFGAYLVKQGKTDFGDVYKIFLILVLSSFSVGQLAGLAPDTTMART 1301
Query: 1284 AIPAVLQITKRKPLI--DNVKGRKLERSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKG 1341
+IP++ I R+PLI D KGR+++RSKPL IE + VTF YPSRPE+ VL+DF LKVKG
Sbjct: 1302 SIPSIFDIIHRQPLIGNDREKGRQIDRSKPLDIEFRKVTFAYPSRPEIMVLRDFYLKVKG 1361
Query: 1342 GSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQEPAL 1401
GSMVALVGGSGSGKSTV+WLIQRFYDPNQGKV + VDLR++N+KWLRKQ ALVGQEPAL
Sbjct: 1362 GSMVALVGGSGSGKSTVVWLIQRFYDPNQGKVTLGSVDLRDLNLKWLRKQIALVGQEPAL 1421
Query: 1402 FAGTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRI 1461
FAG+IR+NIA G+P+ASWAEIEEAA EAYIHKFISSLPQGYETQVGESGVQLSGGQKQRI
Sbjct: 1422 FAGSIRENIAFGDPQASWAEIEEAAIEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRI 1481
Query: 1462 AIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIREANMIA 1521
AIARAILK SRVLLLDEASSALDLESEKHVQ+ALR VSK++TT+VVAHRLSTIREA+MIA
Sbjct: 1482 AIARAILKKSRVLLLDEASSALDLESEKHVQEALRNVSKQSTTVVVAHRLSTIREADMIA 1541
Query: 1522 VVRDGAVVEYGSHETLLASHLNGVYASLVRAETEANAFS 1560
V++DGAV+EYGSH+ LL SHLNGV+A LVRAETEA AF+
Sbjct: 1542 VMKDGAVIEYGSHDALLNSHLNGVFAGLVRAETEATAFA 1580
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356560185|ref|XP_003548375.1| PREDICTED: ABC transporter B family member 19-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2036 bits (5276), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1059/1587 (66%), Positives = 1233/1587 (77%), Gaps = 106/1587 (6%)
Query: 4 SFEIDHSSFHTYHPQHHTTPIRSHYGSSSPSPFNSRYLSSRNPTPHRVRRR--APATPFA 61
SF + SF ++ +H+ TP+ H S S S NP R RRR PATPFA
Sbjct: 5 SFSFEGDSFSSHQRRHYPTPVSYHTVYGSGSGSFISSSSLTNP---RARRRNPVPATPFA 61
Query: 62 ADDDISWQGEVSWQVEPSGWRD-SRNLGAALSPWALSTPS-NINAFRRSAKDFYLSRTSG 119
+DDD SWQGEVSW+ E +GWRD S N G+ LSPW S+PS + FRRSA D+YLSRTS
Sbjct: 62 SDDDHSWQGEVSWKFEATGWRDYSTNFGSVLSPWPESSPSGHSRVFRRSANDYYLSRTS- 120
Query: 120 GLRSFANPYYDYPSHSGVPSGRLELHSYVARDNN-SFLRSKKNKLGDHRKSHQGIPRLGK 178
R AN Y+ + GR+EL SY ARDN+ S+ D QG+ R G
Sbjct: 121 RFRGLANSSYEQSGY-----GRVELQSYDARDNDYSYF--------DQHSRPQGLSRSGF 167
Query: 179 IEGTSR---PVSPLATEDELSMIDYDTLDHVERQVHLSGTNHNPHKHDDPRWFSVSRAYM 235
I+ S SPLA EDELSMIDY ++ H
Sbjct: 168 IQEKSSKKCKTSPLAEEDELSMIDY-SITH------------------------------ 196
Query: 236 DDDDVFSHFHNHHGSSDGKHNNNVHELSQNGHDHGGHHRMSYKMDNLDDEFLHGHRGHDA 295
D V S N HG EL + H HGG + +Y H GHD
Sbjct: 197 --DHVISPNRNGHG----------LELPYSKHGHGGDYGGNY------------HVGHDG 232
Query: 296 WLSTSH----HYGGGD--GRNNDPELVSPY--------NEDDAEVAKPVGLFSLFKYSTK 341
+SH + GGD ++D E +S Y +E+DA K VG+FSLFKYSTK
Sbjct: 233 --PSSHGSQIYRSGGDYTYSHHDIEKLSAYDEEGEEDMDEEDARPPKTVGIFSLFKYSTK 290
Query: 342 LDMILVLLGCIGALINGGALPWYSYFFGNFVNKIANESSDPDKTQMMKDAEKICLLMTVL 401
LD++LV +GC+GALINGG+LPWYSY FG+ VNKI+ ++ DK QMMKD E+IC M L
Sbjct: 291 LDLVLVFVGCLGALINGGSLPWYSYLFGDVVNKISE--AENDKAQMMKDVERICKFMAGL 348
Query: 402 AAIVMMGAYLEITCWRLVGERSAQRIRTKYLRAVLRQDIAFFDTEVSTSDIMHGISSDIA 461
AA+V+ GAYL+ITCWRLVGER+AQRIRT+YLRAVLRQDI FFDT+++T DIMHGI+SD+A
Sbjct: 349 AAVVVFGAYLQITCWRLVGERAAQRIRTEYLRAVLRQDITFFDTDINTGDIMHGIASDVA 408
Query: 462 QIQEVMGEKVAHFAHNIFTFICGYTVGFLRSWKVSLVVLSVTPLMMFCGMAYKAVYVGLT 521
QIQEVMGEK+AHF H+IFTFICGY VGF RSWKVSLVV SVTPL MFCGMAYKA+Y GLT
Sbjct: 409 QIQEVMGEKMAHFIHHIFTFICGYAVGFKRSWKVSLVVFSVTPLTMFCGMAYKALYGGLT 468
Query: 522 SKEEASYRRAGSVAEQAISSIRTVFSFVAEDHFAVRYAGLLADSIPFGAKLGFAKGAGMG 581
+KEEASYR+AGS+AEQAISSIRTVFSFVAE A +YA LL S P GA++GFAKG GMG
Sbjct: 469 AKEEASYRKAGSIAEQAISSIRTVFSFVAESKLAGKYAELLQKSAPIGARVGFAKGIGMG 528
Query: 582 VIYLVTYATWALAFWYGSILVARKELSGGAAIACFFGVNVGGRGLALSLSYFAQFAQGTV 641
VIYL+TY+TWALAFWYGS+L+AR EL GG+AIACFFGVNVGGRGLAL+LSYFAQF QGTV
Sbjct: 529 VIYLITYSTWALAFWYGSVLIARNELDGGSAIACFFGVNVGGRGLALALSYFAQFGQGTV 588
Query: 642 AATRVFEIIDRVPEIDPYNSEGRKLSSVSGKIEFKGVTFAYPSRPETVILRSLNLVIPSS 701
AA+RVF II+R+PEID Y+ EGRKLS V G+IE K V+FAYPSRP+++IL SLNLV+PSS
Sbjct: 589 AASRVFYIIERIPEIDSYSPEGRKLSGVRGRIELKSVSFAYPSRPDSLILHSLNLVLPSS 648
Query: 702 KTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIGMVGQEPILF 761
KT+ALVG SGGGKST+FALIERFYDP +G+ITLDGHDL++LQVKWLR QIGMVGQEPILF
Sbjct: 649 KTVALVGASGGGKSTIFALIERFYDPIEGIITLDGHDLRTLQVKWLRDQIGMVGQEPILF 708
Query: 762 ATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIA 821
ATSILENV+MGK+NAT KEA+AAC AA AHSFIS LPL YDTQVGDRGT+LSGGQKQRIA
Sbjct: 709 ATSILENVMMGKDNATKKEAIAACIAADAHSFISSLPLSYDTQVGDRGTKLSGGQKQRIA 768
Query: 822 LARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKNANTIVV 881
LARAM+KDP+ILLLDEPTSALD+ESES VQ+AIDKIS RTTIVIAHR+ATVKNA+ IVV
Sbjct: 769 LARAMVKDPKILLLDEPTSALDAESESAVQRAIDKISASRTTIVIAHRIATVKNAHAIVV 828
Query: 882 LDQGSVVEIGNHRQLLERGGAYHDLVKLASEAVSQPQSKQKDAKRGIEFSIYEKSVIEVS 941
L+ GSV EIG+HRQL+ + GAY++LVKLA+EA+S+P + + + ++ + SIY+K + +S
Sbjct: 829 LEHGSVTEIGDHRQLMAKAGAYYNLVKLATEAISKPLAIENEMQKANDLSIYDKPISGLS 888
Query: 942 RSRYAN---EVSKSKYFKSMQAEIQTVE---EEQQKPRPRKFQLSEIWKLQRPEFAMIIF 995
SRY ++ K KS Q E + E++Q RK+ LSE+WKLQ+PEF M+
Sbjct: 889 GSRYLVDDIDIPWPKGLKSTQEEEEKKHQDMEDKQDKMARKYSLSEVWKLQKPEFVMLFS 948
Query: 996 GFILGMHAGAILSIFPLILGQALQVYFDDTASTLRRDVRYLSLALVGLGFGCIIFMTGQQ 1055
G ILGM AGAILS+FPL+LG +L VYF ++RDV L L LVGLGFGCI+ MTGQQ
Sbjct: 949 GLILGMFAGAILSLFPLVLGISLGVYFGHDTHKMKRDVGRLCLTLVGLGFGCILSMTGQQ 1008
Query: 1056 GFCGWAGTKLTMRVRELLFRSILKQEPGWFDFEENSTGVLVSRLSIDSISFRSVLGDRFS 1115
G CGWAG+KLT RVR+LLF+SILKQEPGWFDFEENSTGVLVSRLS+D +SFRSVLGDRFS
Sbjct: 1009 GLCGWAGSKLTQRVRDLLFQSILKQEPGWFDFEENSTGVLVSRLSLDCVSFRSVLGDRFS 1068
Query: 1116 VLLMGLSSAAVGLGVSLVLNWRLTLVAAALTPFTLGASYLSLIINVGPKIDNSSYAKASS 1175
VLLMGLSSAAVGLGVS NWRLTLVAAA+TPF LGASY+SLIINVGP++DN SYAKAS+
Sbjct: 1069 VLLMGLSSAAVGLGVSFAFNWRLTLVAAAVTPFALGASYISLIINVGPRVDNDSYAKASN 1128
Query: 1176 IASGAVSNIRTVTTFSAQEQIINSFDKALSEPKKKSVKRSQILGLTLGFSQGAMYVAYTF 1235
IASGAVSNIRTVTTFSAQEQI+ SFD+ALSEP++KS++ SQ+ GL G QG+MY AYT
Sbjct: 1129 IASGAVSNIRTVTTFSAQEQIVKSFDRALSEPRRKSLRSSQLQGLMFGLFQGSMYGAYTL 1188
Query: 1236 TLWFGAYLVKQGHASFGVVYKIFLILVLSSFSVGQLAGLAPDTSMAATAIPAVLQITKRK 1295
TLWFGAYLV+ A G V+KIFLILVLSSFSVGQLAGLAPDT+MAA AIPAV I KR+
Sbjct: 1189 TLWFGAYLVEHDKAKLGDVFKIFLILVLSSFSVGQLAGLAPDTTMAAAAIPAVQDIIKRR 1248
Query: 1296 PLIDN--VKGRKLERSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGS 1353
PLIDN KGR ++RSK IE KMVTF YPSRPEVTVL+DFCLKVK GS VALVG SGS
Sbjct: 1249 PLIDNDRTKGRIVDRSKRFNIEFKMVTFAYPSRPEVTVLRDFCLKVKAGSTVALVGPSGS 1308
Query: 1354 GKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALG 1413
GKSTVIWL QRFYDP+QGKVM+ G+DLREI+VKWLR+Q ALVGQEP+LFAG+IR+NIA G
Sbjct: 1309 GKSTVIWLTQRFYDPDQGKVMMSGIDLREIDVKWLRRQMALVGQEPSLFAGSIRENIAFG 1368
Query: 1414 NPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRV 1473
+P ASW EIEEAA+EAYIHKFIS LPQGYETQVGESGVQLSGGQKQRIAIARAILK SRV
Sbjct: 1369 DPNASWTEIEEAAKEAYIHKFISGLPQGYETQVGESGVQLSGGQKQRIAIARAILKKSRV 1428
Query: 1474 LLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGS 1533
LLLDEASSALDLESEKH+Q+AL+KV+K ATTI+VAHRLSTIREA+ IAV+RDG VVEYGS
Sbjct: 1429 LLLDEASSALDLESEKHIQEALKKVTKEATTIIVAHRLSTIREADKIAVMRDGEVVEYGS 1488
Query: 1534 HETLLASHLNGVYASLVRAETEANAFS 1560
H+ L+AS+ NG+YA LVRAETEANAF+
Sbjct: 1489 HDNLMASNQNGLYACLVRAETEANAFA 1515
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357514163|ref|XP_003627370.1| ABC transporter B family member [Medicago truncatula] gi|355521392|gb|AET01846.1| ABC transporter B family member [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1905 bits (4934), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 926/1236 (74%), Positives = 1080/1236 (87%), Gaps = 4/1236 (0%)
Query: 328 KPVGLFSLFKYSTKLDMILVLLGCIGALINGGALPWYSYFFGNFVNKIANESSDPDKTQM 387
K VGLFSLF+Y+ D +LV +GCIGALINGG+LPWYSY FGN VNK++ E+ + DK QM
Sbjct: 254 KNVGLFSLFRYTRNWDWLLVFIGCIGALINGGSLPWYSYLFGNLVNKLSREAKN-DKDQM 312
Query: 388 MKDAEKICLLMTVLAAIVMMGAYLEITCWRLVGERSAQRIRTKYLRAVLRQDIAFFDTEV 447
+KD E+IC+ MT LAA+V++GAY+EITCWRLVGERSAQRIRT+YLRA+LRQDI+FFDT++
Sbjct: 313 LKDVEQICIFMTGLAAVVVVGAYMEITCWRLVGERSAQRIRTEYLRAILRQDISFFDTDI 372
Query: 448 STSDIMHGISSDIAQIQEVMGEKVAHFAHNIFTFICGYTVGFLRSWKVSLVVLSVTPLMM 507
+T DIMHGI+SD+AQIQEVMGEK+AHF H++FTFICGY VGF RSWKVSLVV SVTPL M
Sbjct: 373 NTGDIMHGIASDVAQIQEVMGEKMAHFIHHVFTFICGYAVGFRRSWKVSLVVFSVTPLTM 432
Query: 508 FCGMAYKAVYVGLTSKEEASYRRAGSVAEQAISSIRTVFSFVAEDHFAVRYAGLLADSIP 567
FCGMAYKA+Y GLT+KEEASYR+AGS+AEQAISSIRTVFSFVAE +Y+ LL S P
Sbjct: 433 FCGMAYKALYGGLTAKEEASYRKAGSIAEQAISSIRTVFSFVAESQLGEKYSELLQKSAP 492
Query: 568 FGAKLGFAKGAGMGVIYLVTYATWALAFWYGSILVARKELSGGAAIACFFGVNVGGRGLA 627
GAK+GFAKGAGMGVIYLVTY+TWALAFWYGSIL+AR EL GG+AIACFFGVNVGGRGLA
Sbjct: 493 IGAKIGFAKGAGMGVIYLVTYSTWALAFWYGSILIARGELDGGSAIACFFGVNVGGRGLA 552
Query: 628 LSLSYFAQFAQGTVAATRVFEIIDRVPEIDPYNSEGRKLSSVSGKIEFKGVTFAYPSRPE 687
L+LSYFAQFAQGTVAA+RVF II+R+PEIDPYN EGRKLSSV G+IE K V FAYPSRP+
Sbjct: 553 LALSYFAQFAQGTVAASRVFYIIERIPEIDPYNPEGRKLSSVRGRIELKNVIFAYPSRPD 612
Query: 688 TVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWL 747
++IL S+NLV PSSKTLALVG SGGGKST+FALIERFYDP +G+ITLDGHDL++LQVKWL
Sbjct: 613 SLILNSINLVFPSSKTLALVGASGGGKSTIFALIERFYDPIEGIITLDGHDLRTLQVKWL 672
Query: 748 RTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGD 807
R QIGMVGQEPILFATSILENV+MGK+NAT +EA++AC AA AH+FIS+LPL YDTQVGD
Sbjct: 673 RDQIGMVGQEPILFATSILENVMMGKDNATKEEAISACIAADAHNFISKLPLRYDTQVGD 732
Query: 808 RGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIA 867
RGT+LSGGQKQRIALARAMIK+P+ILLLDEPTSALD+ESE+ VQ+AIDKIS GRTTIVIA
Sbjct: 733 RGTKLSGGQKQRIALARAMIKNPKILLLDEPTSALDAESEAAVQRAIDKISAGRTTIVIA 792
Query: 868 HRLATVKNANTIVVLDQGSVVEIGNHRQLLERGGAYHDLVKLASEAVSQPQSKQKDAKRG 927
HR+ATVKNA++IVVL+ GSV EIG+HRQL+ + G Y +LVKLA+E++S+P + + +
Sbjct: 793 HRIATVKNADSIVVLEHGSVTEIGDHRQLMSKAGTYFNLVKLATESISKPLPTENNMQIT 852
Query: 928 IEF-SIYEKSVIEVSRSRYANEVSKSKYFKSMQAEIQTVEEEQQKPRPRKFQLSEIWKLQ 986
+ SI K ++++S Y ++S+SK SMQ E Q E+++ + R ++LSE+WKLQ
Sbjct: 853 KDLSSINNKYAPDIAKSSYLVDISRSKLEDSMQDENQEDIEDKKYKKSRNYKLSEVWKLQ 912
Query: 987 RPEFAMIIFGFILGMHAGAILSIFPLILGQALQVYFDDTASTLRRDVRYLSLALVGLGFG 1046
+PEF M+I G ++GM AGA LS+FPL+LG +L VYF D S ++RDV YL L LVGLGFG
Sbjct: 913 KPEFMMLISGLVMGMFAGACLSLFPLVLGISLGVYFSDDTSKMKRDVGYLCLVLVGLGFG 972
Query: 1047 CIIFMTGQQGFCGWAGTKLTMRVRELLFRSILKQEPGWFDFEENSTGVLVSRLSIDSISF 1106
CI+ MTGQQG CGWAG+KLT+RVR LLF+SIL+QEPGWFDF+ENSTGVLVS+LSID++SF
Sbjct: 973 CILSMTGQQGLCGWAGSKLTLRVRNLLFQSILRQEPGWFDFDENSTGVLVSKLSIDAVSF 1032
Query: 1107 RSVLGDRFSVLLMGLSSAAVGLGVSLVLNWRLTLVAAALTPFTLGASYLSLIINVGPKID 1166
RSVLGDRFSVLLMGLSSAAVGLGVS V NW LTLVAAA+TP TLGASY++LIIN+GPKI+
Sbjct: 1033 RSVLGDRFSVLLMGLSSAAVGLGVSFVFNWELTLVAAAVTPLTLGASYINLIINIGPKIN 1092
Query: 1167 NSSYAKASSIASGAVSNIRTVTTFSAQEQIINSFDKALSEPKKKSVKRSQILGLTLGFSQ 1226
N+SYA+AS+IASGAVSNIRTV TFSAQEQI+N+FDKALSEP+KKS+K SQ+ GL G Q
Sbjct: 1093 NNSYARASNIASGAVSNIRTVATFSAQEQIVNAFDKALSEPRKKSLKSSQLQGLVFGLFQ 1152
Query: 1227 GAMYVAYTFTLWFGAYLVKQGHASFGVVYKIFLILVLSSFSVGQLAGLAPDTSMAATAIP 1286
GAMY AYT TLWFGAYLVK F VYKIFLILVLSSFSVGQLAGLAPDTSMAA++IP
Sbjct: 1153 GAMYAAYTLTLWFGAYLVKNNRGDFDDVYKIFLILVLSSFSVGQLAGLAPDTSMAASSIP 1212
Query: 1287 AVLQITKRKPLI--DNVKGRKLERSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSM 1344
AV + RKPLI D K +K++RSK IE KMVTF YPSRPEVTVL++FCLKV+GGS
Sbjct: 1213 AVQDVINRKPLIGNDGRKTKKVDRSKAFKIEFKMVTFAYPSRPEVTVLRNFCLKVQGGST 1272
Query: 1345 VALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQEPALFAG 1404
VALVG SGSGKSTV+WL QRFYDP+QGKVM+ GVDLREI+VKWLR+Q ALVGQEPALFAG
Sbjct: 1273 VALVGPSGSGKSTVVWLTQRFYDPDQGKVMMSGVDLREIDVKWLRRQIALVGQEPALFAG 1332
Query: 1405 TIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIA 1464
+IR+NIA G+ ASWAEIE AA EAYIHKFIS LPQGYETQVGESGVQLSGGQKQRIAIA
Sbjct: 1333 SIRENIAFGDQSASWAEIEAAAMEAYIHKFISGLPQGYETQVGESGVQLSGGQKQRIAIA 1392
Query: 1465 RAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIREANMIAVVR 1524
RAILK S+VLLLDEASSALDLESEKH+Q+AL+ VSK ATTI+VAHRLSTIREA+ IAV+R
Sbjct: 1393 RAILKKSKVLLLDEASSALDLESEKHIQEALKNVSKEATTIIVAHRLSTIREADKIAVMR 1452
Query: 1525 DGAVVEYGSHETLLASHLNGVYASLVRAETEANAFS 1560
+G VVEYGSH+TL++S NG+YASLVRAETEANAFS
Sbjct: 1453 NGEVVEYGSHDTLISSIQNGLYASLVRAETEANAFS 1488
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449480670|ref|XP_004155963.1| PREDICTED: ABC transporter B family member 19-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1867 bits (4837), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 930/1236 (75%), Positives = 1081/1236 (87%), Gaps = 12/1236 (0%)
Query: 328 KPVGLFSLFKYSTKLDMILVLLGCIGALINGGALPWYSYFFGNFVNKIANESSDPDKTQM 387
K VGLFSLFKYSTKLD++L++LGC+GALINGG+LPWYSY FGNFVN++A +SS+ DK+QM
Sbjct: 224 KAVGLFSLFKYSTKLDLLLIILGCLGALINGGSLPWYSYLFGNFVNQLATDSSEADKSQM 283
Query: 388 MKDAEKICLLMTVLAAIVMMGAYLEITCWRLVGERSAQRIRTKYLRAVLRQDIAFFDTEV 447
MKD ICL MT LAAIV++GAY+EITCWRLVG+RSAQRIRTKYLRAVLRQDI+FFDT++
Sbjct: 284 MKDVGTICLFMTGLAAIVVVGAYMEITCWRLVGDRSAQRIRTKYLRAVLRQDISFFDTKI 343
Query: 448 STSDIMHGISSDIAQIQEVMGEKVAHFAHNIFTFICGYTVGFLRSWKVSLVVLSVTPLMM 507
ST DIMHGISSD+AQIQEVMGEK+AHF H+IFTFICGY VGFLRSWKVSLVV SVTPLMM
Sbjct: 344 STGDIMHGISSDVAQIQEVMGEKMAHFIHHIFTFICGYVVGFLRSWKVSLVVFSVTPLMM 403
Query: 508 FCGMAYKAVYVGLTSKEEASYRRAGSVAEQAISSIRTVFSFVAEDHFAVRYAGLLADSIP 567
FCG+AYKA+YVGLTSKEEASYR+AG VAEQ+ISSIRTVFSFVAED+ +YA LL +S+P
Sbjct: 404 FCGIAYKAIYVGLTSKEEASYRKAGGVAEQSISSIRTVFSFVAEDNLGAKYAELLENSVP 463
Query: 568 FGAKLGFAKGAGMGVIYLVTYATWALAFWYGSILVARKELSGGAAIACFFGVNVGGRGLA 627
FG ++GF+KG GMGVIYLVTY+TWALAFWYG+ILVARKE++GG AIACFFGVNVGGRGLA
Sbjct: 464 FGKRIGFSKGVGMGVIYLVTYSTWALAFWYGAILVARKEITGGDAIACFFGVNVGGRGLA 523
Query: 628 LSLSYFAQFAQGTVAATRVFEIIDRVPEIDPYNSEGRKLSSVSGKIEFKGVTFAYPSRPE 687
LSLSYFAQFAQGTVAA RVF IIDRVPEID Y+ GR L +V G+IEFKGV+F+YPSRP+
Sbjct: 524 LSLSYFAQFAQGTVAAGRVFTIIDRVPEIDSYSPMGRTLRNVRGRIEFKGVSFSYPSRPD 583
Query: 688 TVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWL 747
++IL SLNLV PSSKTLALVG SGGGKST+FALIERFYDP +G I LDG D+++LQ+KWL
Sbjct: 584 SLILNSLNLVFPSSKTLALVGPSGGGKSTIFALIERFYDPIQGTIILDGRDIRTLQIKWL 643
Query: 748 RTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGD 807
R QIGMVGQEPILFATSI+ENV+MGKENAT KEA+AAC AA+A +FIS LP GYDTQVGD
Sbjct: 644 RDQIGMVGQEPILFATSIIENVMMGKENATEKEAIAACIAANADNFISGLPQGYDTQVGD 703
Query: 808 RGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIA 867
RG LSGGQKQRIALARAMIKDP+ILLLDEPTSALD ESES VQ+AID++S+GRTTIVIA
Sbjct: 704 RGALLSGGQKQRIALARAMIKDPKILLLDEPTSALDPESESTVQKAIDQLSLGRTTIVIA 763
Query: 868 HRLATVKNANTIVVLDQGSVVEIGNHRQLLERGGAYHDLVKLASEAVSQPQSKQKDAKRG 927
HRLATV+NA+ I V+++GS+VEIG HRQL+ER GAY++LVKLASEAV Q KQ D ++
Sbjct: 764 HRLATVRNAHAIAVIERGSLVEIGTHRQLMEREGAYNNLVKLASEAVRQTSPKQNDVQKF 823
Query: 928 IEFSIYEKSVIEVSRSRYANEVSKSKYFKSMQAEIQTVEEEQQKPRPRKFQLSEIWKLQR 987
+ S ++S+S Y E+SKS+YFKS E +EE+ + K +++E+ KLQ+
Sbjct: 824 TDLSFN-----DISKSEYVVEISKSRYFKSTVEEKLEKKEEKGR----KVRITELLKLQK 874
Query: 988 PEFAMIIFGFILGMHAGAILSIFPLILGQALQVYFDDTASTLRRDVRYLSLALVGLGFGC 1047
PE M++ GF++G+ AGAILS+FP ILG+ALQVYFD AS ++ V +L + LVGLG GC
Sbjct: 875 PEILMLLLGFVMGLSAGAILSVFPFILGEALQVYFDSEASRMKAKVGHLCIVLVGLGIGC 934
Query: 1048 IIFMTGQQGFCGWAGTKLTMRVRELLFRSILKQEPGWFDFEENSTGVLVSRLSIDSISFR 1107
I+FMTGQQGFCGWAGTKLT+RVR+LLFRSIL+QEPGWFDF ENSTG+L+SRLSID I+FR
Sbjct: 935 ILFMTGQQGFCGWAGTKLTVRVRDLLFRSILRQEPGWFDFPENSTGILISRLSIDCINFR 994
Query: 1108 SVLGDRFSVLLMGLSSAAVGLGVSLVLNWRLTLVAAALTPFTLGASYLSLIINVGPKIDN 1167
S LGDR SVLLMG+S+AAVGLG+S L WRLTL+AAALTPFTLGASY+SL+IN+GPK+D
Sbjct: 995 SFLGDRISVLLMGVSAAAVGLGLSFWLEWRLTLLAAALTPFTLGASYISLVINIGPKLDE 1054
Query: 1168 SSYAKASSIASGAVSNIRTVTTFSAQEQIINSFDKALSEPKKKSVKRSQILGLTLGFSQG 1227
++YAKAS+IASGAVSNIRTVTTFSAQEQ++ +F+++LSEPKKKSVK+SQILGLT G SQG
Sbjct: 1055 NAYAKASNIASGAVSNIRTVTTFSAQEQLVKAFNRSLSEPKKKSVKKSQILGLTFGLSQG 1114
Query: 1228 AMYVAYTFTLWFGAYLVKQGHASFGVVYKIFLILVLSSFSVGQLAGLAPDTSMAATAIPA 1287
MY AYT TLWF + L++QG SFG VYKIFLILVLSSFSVGQLAGLAPDTSMA TAIPA
Sbjct: 1115 GMYGAYTLTLWFASRLIEQGKTSFGDVYKIFLILVLSSFSVGQLAGLAPDTSMAETAIPA 1174
Query: 1288 VLQITKRKPLIDNVKG--RKLERSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMV 1345
VL I R+PLI + KG +K E+ K G+E KMVTF YPSRPE+ VL+DFCLKVKG S V
Sbjct: 1175 VLDIINRRPLIGDDKGKSKKREQLKSFGVEFKMVTFAYPSRPEMIVLRDFCLKVKGCSTV 1234
Query: 1346 ALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQEPALFAGT 1405
ALVG SGSGKSTVIWL QRFYDP +GKV++ G DLREINVKWLR+QTALVGQEPALFAG+
Sbjct: 1235 ALVGESGSGKSTVIWLTQRFYDPIRGKVLMGGTDLREINVKWLRRQTALVGQEPALFAGS 1294
Query: 1406 IRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIAR 1465
I+DNIA NP ASW EIEEAA +AYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIAR
Sbjct: 1295 IKDNIAFANPNASWTEIEEAARDAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIAR 1354
Query: 1466 AILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIREANMIAVVRD 1525
AILK S VLLLDEASSALDLESEKHVQ ALRKVSK ATTI+VAHRLSTI A+ IAVVR+
Sbjct: 1355 AILKKSSVLLLDEASSALDLESEKHVQAALRKVSKEATTIIVAHRLSTIHHADTIAVVRN 1414
Query: 1526 GAVVEYGSHETLLA-SHLNGVYASLVRAETEANAFS 1560
G+V+E+GSH++L+A +HL GVYA++V AE+EA AFS
Sbjct: 1415 GSVIEHGSHDSLMAKAHLGGVYANMVHAESEATAFS 1450
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449448128|ref|XP_004141818.1| PREDICTED: ABC transporter B family member 19-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1848 bits (4787), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 930/1236 (75%), Positives = 1081/1236 (87%), Gaps = 12/1236 (0%)
Query: 328 KPVGLFSLFKYSTKLDMILVLLGCIGALINGGALPWYSYFFGNFVNKIANESSDPDKTQM 387
K VGLFSLFKYSTKLD++L++LGC+GALINGG+LPWYSY FGNFVN++A +SS+ DK+QM
Sbjct: 224 KAVGLFSLFKYSTKLDLLLIILGCLGALINGGSLPWYSYLFGNFVNQLATDSSEADKSQM 283
Query: 388 MKDAEKICLLMTVLAAIVMMGAYLEITCWRLVGERSAQRIRTKYLRAVLRQDIAFFDTEV 447
MKD ICL MT LAAIV++GAY+EITCWRLVG+RSAQRIRTKYLRAVLRQDI+FFDT++
Sbjct: 284 MKDVGTICLFMTGLAAIVVVGAYMEITCWRLVGDRSAQRIRTKYLRAVLRQDISFFDTKI 343
Query: 448 STSDIMHGISSDIAQIQEVMGEKVAHFAHNIFTFICGYTVGFLRSWKVSLVVLSVTPLMM 507
ST DIMHGISSD+AQIQEVMGEK+AHF H+IFTFICGY VGFLRSWKVSLVV SVTPLMM
Sbjct: 344 STGDIMHGISSDVAQIQEVMGEKMAHFIHHIFTFICGYVVGFLRSWKVSLVVFSVTPLMM 403
Query: 508 FCGMAYKAVYVGLTSKEEASYRRAGSVAEQAISSIRTVFSFVAEDHFAVRYAGLLADSIP 567
FCG+AYKA+YVGLTSKEEASYR+AG VAEQ+ISSIRTVFSFVAED+ +YA LL +S+P
Sbjct: 404 FCGIAYKAIYVGLTSKEEASYRKAGGVAEQSISSIRTVFSFVAEDNLGAKYAELLENSVP 463
Query: 568 FGAKLGFAKGAGMGVIYLVTYATWALAFWYGSILVARKELSGGAAIACFFGVNVGGRGLA 627
FG ++GF+KG GMGVIYLVTY+TWALAFWYG+ILVARKE++GG AIACFFGVNVGGRGLA
Sbjct: 464 FGKRIGFSKGVGMGVIYLVTYSTWALAFWYGAILVARKEITGGDAIACFFGVNVGGRGLA 523
Query: 628 LSLSYFAQFAQGTVAATRVFEIIDRVPEIDPYNSEGRKLSSVSGKIEFKGVTFAYPSRPE 687
LSLSYFAQFAQGTVAA RVF IIDRVPEID Y+ GR L +V G+IEFKGV+F+YPSRP+
Sbjct: 524 LSLSYFAQFAQGTVAAGRVFTIIDRVPEIDSYSPMGRTLRNVRGRIEFKGVSFSYPSRPD 583
Query: 688 TVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWL 747
++IL SLNLV PSSKTLALVG SGGGKST+FALIERFYDP +G I LDG D+++LQ+KWL
Sbjct: 584 SLILNSLNLVFPSSKTLALVGPSGGGKSTIFALIERFYDPIQGTIILDGRDIRTLQIKWL 643
Query: 748 RTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGD 807
R QIGMVGQEPILFATSI+ENV+MGKENAT KEA+AAC AA+A +FIS LP GYDTQVGD
Sbjct: 644 RDQIGMVGQEPILFATSIIENVMMGKENATEKEAIAACIAANADNFISGLPQGYDTQVGD 703
Query: 808 RGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIA 867
RG LSGGQKQRIALARAMIKDP+ILLLDEPTSALD ESES VQ+AID++S+GRTTIVIA
Sbjct: 704 RGALLSGGQKQRIALARAMIKDPKILLLDEPTSALDPESESTVQKAIDQLSLGRTTIVIA 763
Query: 868 HRLATVKNANTIVVLDQGSVVEIGNHRQLLERGGAYHDLVKLASEAVSQPQSKQKDAKRG 927
HRLATV+NA+ I V+++GS+VEIG HRQL+ER GAY++LVKLASEAV Q KQ D ++
Sbjct: 764 HRLATVRNAHAIAVIERGSLVEIGTHRQLMEREGAYNNLVKLASEAVRQTSPKQNDVQKF 823
Query: 928 IEFSIYEKSVIEVSRSRYANEVSKSKYFKSMQAEIQTVEEEQQKPRPRKFQLSEIWKLQR 987
+ S ++S+S Y E+SKS+YFKS E +EE+ + K +++E+ KLQ+
Sbjct: 824 TDLSFN-----DISKSEYVVEISKSRYFKSTVEEKLEKKEEKGR----KVRITELLKLQK 874
Query: 988 PEFAMIIFGFILGMHAGAILSIFPLILGQALQVYFDDTASTLRRDVRYLSLALVGLGFGC 1047
PE M++ GF++G+ AGAILS+FP ILG+ALQVYFD AS ++ V +L + LVGLG GC
Sbjct: 875 PEILMLLLGFLMGLSAGAILSVFPFILGEALQVYFDSEASRMKAKVGHLCIVLVGLGIGC 934
Query: 1048 IIFMTGQQGFCGWAGTKLTMRVRELLFRSILKQEPGWFDFEENSTGVLVSRLSIDSISFR 1107
I+FMTGQQGFCGWAGTKLT+RVR+LLFRSIL+QEPGWFDF ENSTG+L+SRLSID I+FR
Sbjct: 935 ILFMTGQQGFCGWAGTKLTVRVRDLLFRSILRQEPGWFDFPENSTGILISRLSIDCINFR 994
Query: 1108 SVLGDRFSVLLMGLSSAAVGLGVSLVLNWRLTLVAAALTPFTLGASYLSLIINVGPKIDN 1167
S LGDR SVLLMG+S+AAVGLG+S L WRLTL+AAALTPFTLGASY+SL+IN+GPK+D
Sbjct: 995 SFLGDRISVLLMGVSAAAVGLGLSFWLEWRLTLLAAALTPFTLGASYISLVINIGPKLDE 1054
Query: 1168 SSYAKASSIASGAVSNIRTVTTFSAQEQIINSFDKALSEPKKKSVKRSQILGLTLGFSQG 1227
++YAKAS+IASGAVSNIRTVTTFSAQEQ++ +F+++LSEPKKKSVK+SQILGLT G SQG
Sbjct: 1055 NAYAKASNIASGAVSNIRTVTTFSAQEQLVKAFNRSLSEPKKKSVKKSQILGLTFGLSQG 1114
Query: 1228 AMYVAYTFTLWFGAYLVKQGHASFGVVYKIFLILVLSSFSVGQLAGLAPDTSMAATAIPA 1287
MY AYT TLWF + L++QG SFG VYKIFLILVLSSFSVGQLAGLAPDTSMA TAIPA
Sbjct: 1115 GMYGAYTLTLWFASRLIEQGKTSFGDVYKIFLILVLSSFSVGQLAGLAPDTSMAETAIPA 1174
Query: 1288 VLQITKRKPLIDNVKG--RKLERSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMV 1345
VL I R+PLI + KG +K E+ K G+E KMVTF YPSRPE+ VL+DFCLKVKG S V
Sbjct: 1175 VLDIINRRPLIGDDKGKSKKREQLKSFGVEFKMVTFAYPSRPEMIVLRDFCLKVKGCSTV 1234
Query: 1346 ALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQEPALFAGT 1405
ALVG SGSGKSTVIWL QRFYDP +GKV++ G DLREINVKWLR+QTALVGQEPALFAG+
Sbjct: 1235 ALVGESGSGKSTVIWLTQRFYDPIRGKVLMGGTDLREINVKWLRRQTALVGQEPALFAGS 1294
Query: 1406 IRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIAR 1465
I+DNIA NP ASW EIEEAA +AYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIAR
Sbjct: 1295 IKDNIAFANPNASWTEIEEAARDAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIAR 1354
Query: 1466 AILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIREANMIAVVRD 1525
AILK S VLLLDEASSALDLESEKHVQ ALRKVSK ATTI+VAHRLSTI A+ IAVVR+
Sbjct: 1355 AILKKSSVLLLDEASSALDLESEKHVQAALRKVSKEATTIIVAHRLSTIHHADTIAVVRN 1414
Query: 1526 GAVVEYGSHETLLA-SHLNGVYASLVRAETEANAFS 1560
G+V+E+GSH++L+A +HL GVYA++V AE+EA AFS
Sbjct: 1415 GSVIEHGSHDSLMAKAHLGGVYANMVHAESEATAFS 1450
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297742960|emb|CBI35827.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1678 bits (4345), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 881/1238 (71%), Positives = 987/1238 (79%), Gaps = 159/1238 (12%)
Query: 334 SLFKYSTKLDMILVLLGCIGALINGGALPWYSYFFGNFVNKIANESSDPDKTQMMKDAEK 393
S F YSTK D++LV+LGC+GALINGG+LPWYS FGNFVNKIA E DKT+MMKD ++
Sbjct: 51 SEFWYSTKSDILLVILGCLGALINGGSLPWYSLLFGNFVNKIAKEPDSNDKTEMMKDVQQ 110
Query: 394 ICLLMTVL-----------AAIVMMGAYLEITCWRLVGERSAQRIRTKYLRAVLRQDIAF 442
+ + + + + IV++ EITCWR+VGERS+QRIRTKYLRAVLRQDI F
Sbjct: 111 VRVPLFFINKSAYGWTSSNSDIVLITGLAEITCWRIVGERSSQRIRTKYLRAVLRQDIGF 170
Query: 443 FDTEVSTSDIMHGISSDIAQIQEVMGEKVAHFAHNIFTFICGYTVGFLRSWKVSLVVLSV 502
FDT++ST +IMHGISSD+AQIQEVMGEK+AHF H++FTFICGY VGF RSWKVSLVVLSV
Sbjct: 171 FDTQISTGNIMHGISSDVAQIQEVMGEKMAHFIHHVFTFICGYAVGFWRSWKVSLVVLSV 230
Query: 503 TPLMMFCGMAYKAVYVGLTSKEEASYRRAGSVAEQAISSIRTVFSFVAEDHFAVRYAGLL 562
PLMMFCG+AYKA+YVGLT+KEE SYR AGSVAEQAISSIRTVFSFVAEDH A RYA LL
Sbjct: 231 IPLMMFCGIAYKAIYVGLTAKEEVSYRIAGSVAEQAISSIRTVFSFVAEDHLAERYAELL 290
Query: 563 ADSIPFGAKLGFAKGAGMGVIYLVTYATWALAFWYGSILVARKELSGGAAIACFFGVNVG 622
S+PFG KLGFAKGAGMGVIYLVTY+TWALAFWYGSILVAR E+SGGAAIACFFGVN+G
Sbjct: 291 QKSVPFGVKLGFAKGAGMGVIYLVTYSTWALAFWYGSILVARGEISGGAAIACFFGVNLG 350
Query: 623 GRGLALSLSYFAQFAQGTVAATRVFEIIDRVPEIDPYNSEGRKLSSVSGKIEFKGVTFAY 682
GRGLALSLSYFAQFAQGTVAA+RVFEIIDRVPEIDPY+ EGRKL S+ G+IEFKGVTFAY
Sbjct: 351 GRGLALSLSYFAQFAQGTVAASRVFEIIDRVPEIDPYSPEGRKLPSIRGRIEFKGVTFAY 410
Query: 683 PSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSL 742
PSRP ILRSLNL +PSSKTLALVG+SGGGKST+FALIERFYDP KG+ITLDGHD+++L
Sbjct: 411 PSRPTAAILRSLNLEVPSSKTLALVGSSGGGKSTIFALIERFYDPVKGIITLDGHDIRTL 470
Query: 743 QVKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYD 802
QVKWLR QIGMVGQEP+LF TSILENV+MGKENAT KEA+AAC AA+AHSFIS LP GYD
Sbjct: 471 QVKWLRGQIGMVGQEPVLFTTSILENVMMGKENATKKEAIAACVAANAHSFISGLPQGYD 530
Query: 803 TQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRT 862
TQVGDRGTQLSGGQKQRIALARA+ DPRILLLDEPTSALD ESES+VQQAIDKIS GRT
Sbjct: 531 TQVGDRGTQLSGGQKQRIALARALTTDPRILLLDEPTSALDPESESVVQQAIDKISAGRT 590
Query: 863 TIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLERGGAYHDLVKLASEAVSQPQSKQK 922
T+VIAHRLATV+NA+TIVVL+ G+VVE GNH +L+E+ GAY++LVKLASEAVS+P SKQ
Sbjct: 591 TLVIAHRLATVRNAHTIVVLNHGAVVETGNHHKLMEKSGAYYNLVKLASEAVSKPLSKQ- 649
Query: 923 DAKRGIEFSIYEKSVIEVSRSRYANEVSKSKYFKSMQAEIQTVEEEQQKPRPRKFQLSEI 982
D K + + EEE+ +P+P K +SEI
Sbjct: 650 DGK-----------------------------------QYKEEEEEKPEPKPGKVLVSEI 674
Query: 983 WKLQRPEFAMIIFGFILGMHAGAILSIFPLILGQALQVYFDDTASTLRRDVRYLSLALVG 1042
+KLQRPE M L+LG+ VG
Sbjct: 675 FKLQRPELLM-------------------LLLGE------------------------VG 691
Query: 1043 LGFGCIIFMTGQQGFCGWAGTKLTMRVRELLFRSILKQEPGWFDFEENSTGVLVSRLSID 1102
GF CGWAGTKLT RVR+ LFRSILKQEP
Sbjct: 692 QGF------------CGWAGTKLTKRVRDRLFRSILKQEP-------------------- 719
Query: 1103 SISFRSVLGDRFSVLLMGLSSAAVGLGVSLVLNWRLTLVAAALTPFTLGASYLSLIINVG 1162
VLGDRFSVLL GLSSAAVGLG+S L+WRLTL+AAALTP TLGASY SLIINVG
Sbjct: 720 ------VLGDRFSVLLTGLSSAAVGLGISFFLDWRLTLLAAALTPLTLGASYFSLIINVG 773
Query: 1163 PKIDNSSYAKASSIASGAVSNIRTVTTFSAQEQIINSFDKALSEPKKKSVKRSQILGLTL 1222
P++DNSSYA+AS+IA+GAVSNIRTVTTFSAQ+Q++++FD+ALSEPKKKSVKRSQ+LGL L
Sbjct: 774 PRLDNSSYARASNIAAGAVSNIRTVTTFSAQQQLVHTFDQALSEPKKKSVKRSQVLGLAL 833
Query: 1223 GFSQGAMYVAYTFTLWFGAYLVKQGHASFGVVYKIFLILVLSSFSVGQLAGLAPDTSMAA 1282
GFSQGAMY AYT TLWFG YL+K+ A+FG V+KIFLILV+SSFSVGQLAGLAPDTSMAA
Sbjct: 834 GFSQGAMYGAYTLTLWFGTYLIKEDKANFGDVFKIFLILVMSSFSVGQLAGLAPDTSMAA 893
Query: 1283 TAIPAVLQITKRKPLIDNVKGRKLERSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGG 1342
TA LKMVTF YPSRPEVTVL++FCLKVKGG
Sbjct: 894 TA-------------------------------LKMVTFAYPSRPEVTVLREFCLKVKGG 922
Query: 1343 SMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQEPALF 1402
SMVALVGGSGSGKSTV+WLIQRFYDPNQGKV++ GVD++E+NVKWLR+Q ALVGQEPALF
Sbjct: 923 SMVALVGGSGSGKSTVVWLIQRFYDPNQGKVLMGGVDIKEMNVKWLRRQIALVGQEPALF 982
Query: 1403 AGTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIA 1462
AG+IR+NIA GNP ASWAEIEEAA EAYIHKFISSLPQGYETQVGESG QLSGGQKQRIA
Sbjct: 983 AGSIRENIAFGNPNASWAEIEEAANEAYIHKFISSLPQGYETQVGESGAQLSGGQKQRIA 1042
Query: 1463 IARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIREANMIAV 1522
IARAILK S+VLLLDEASSALDLESEKHVQDALRKVS+RATTIVVAHRLSTIREA+MIAV
Sbjct: 1043 IARAILKKSKVLLLDEASSALDLESEKHVQDALRKVSERATTIVVAHRLSTIREAHMIAV 1102
Query: 1523 VRDGAVVEYGSHETLLASHLNGVYASLVRAETEANAFS 1560
V+DGAV EYGSH+TLLASHLNGVYASLVRAETEA+AFS
Sbjct: 1103 VKDGAVTEYGSHDTLLASHLNGVYASLVRAETEASAFS 1140
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357120542|ref|XP_003561986.1| PREDICTED: ABC transporter B family member 19-like [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 1677 bits (4344), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 828/1284 (64%), Positives = 1014/1284 (78%), Gaps = 55/1284 (4%)
Query: 320 NEDDAEV----AKPVGLFSLFKYSTKLDMILVLLGCIGALINGGALPWYSYFFGNFVNKI 375
+EDD EV K V + LFKYST LD++L++LGC+GA+INGG+LPWYSY FGNFVNKI
Sbjct: 200 DEDDGEVELRAGKAVSVTGLFKYSTPLDIVLLVLGCVGAMINGGSLPWYSYLFGNFVNKI 259
Query: 376 ANESSDPDKTQMMKDAEKICLLMTVLAAIVMMGAYLEITCWRLVGERSAQRIRTKYLRAV 435
DKTQMMKD +I + M +LA IV++GAYLEI CWR+V ERSA R+R +YL+AV
Sbjct: 260 VTS----DKTQMMKDVRQISVYMVILAVIVVIGAYLEIMCWRIVAERSALRVRREYLKAV 315
Query: 436 LRQDIAFFDTEVSTSDIMHGISSDIAQIQEVMGEKVAHFAHNIFTFICGYTVGFLRSWKV 495
LRQ+I FFDTEVST ++M ISSD+AQIQEVMG+K+A F H++FTFI GY VGF SW++
Sbjct: 316 LRQEIGFFDTEVSTGEVMQSISSDVAQIQEVMGDKMAGFVHHVFTFIFGYVVGFKTSWRI 375
Query: 496 SLVVLSVTPLMMFCGMAYKAVYVGLTSKEEASYRRAGSVAEQAISSIRTVFSFVAEDHFA 555
+L VL+VTPLMM CG+AYKA+Y GLT+KEEASY+RAG+VA+QAISSIRTV SFV ED A
Sbjct: 376 TLAVLAVTPLMMACGLAYKAIYGGLTAKEEASYQRAGNVAQQAISSIRTVLSFVMEDRLA 435
Query: 556 VRYAGLLADSIPFGAKLGFAKGAGMGVIYLVTYATWALAFWYGSILVARKELSGGAAIAC 615
+YA L S P G K+GFAKGAGMG+IYLVTY+ WALA WYG+ LVA+ E+ GG AIAC
Sbjct: 436 DKYADWLQRSSPIGVKMGFAKGAGMGMIYLVTYSQWALALWYGAKLVAQGEIKGGDAIAC 495
Query: 616 FFGVNVGGRGLALSLSYFAQFAQGTVAATRVFEIIDRVPEIDPYNSEGRKLSSVSGKIEF 675
FFGV VGGRGLALSLSY AQFAQGT AA RVFEIIDR PEIDPY + GR LSSV G+IEF
Sbjct: 496 FFGVMVGGRGLALSLSYSAQFAQGTAAAGRVFEIIDRAPEIDPYGTAGRALSSVRGRIEF 555
Query: 676 KGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKG----- 730
K V FAYPSRP+++IL +LNL +P++K LALVG SGGGKSTVFALIERFYDPT+G
Sbjct: 556 KDVEFAYPSRPDSLILYNLNLTVPAAKMLALVGVSGGGKSTVFALIERFYDPTRGELLPI 615
Query: 731 --------------------------LITLDGHDLKSLQVKWLRTQIGMVGQEPILFATS 764
ITLDG +L SL +KWLR+QIG+VGQEPILFATS
Sbjct: 616 AVRRGCILHRSVGEILIVLGWVLCVGTITLDGQELGSLNLKWLRSQIGLVGQEPILFATS 675
Query: 765 ILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALAR 824
I+ENV+MGKENAT +EAVAAC A+AH+F+ LP GYDTQVGDRGTQ+SGGQKQRIALAR
Sbjct: 676 IIENVMMGKENATRQEAVAACTKANAHTFVLGLPDGYDTQVGDRGTQMSGGQKQRIALAR 735
Query: 825 AMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQ 884
A+I++PRILLLDEPTSALD+ESE++VQQ+ID++SVGRT +VIAHRLATV+NA+TI VLD+
Sbjct: 736 AIIREPRILLLDEPTSALDAESEAVVQQSIDRLSVGRTVLVIAHRLATVRNADTIAVLDR 795
Query: 885 GSVVEIGNHRQLLERGGAYHDLVKLASEAVSQPQSKQKDAKRGIEFSIYEKSVIEVSRSR 944
G+VVE G H L+ R G Y LVKLAS + + +S + DA + S + S
Sbjct: 796 GAVVESGRHADLMTRNGPYAGLVKLASNS-GRTESDKPDAATPGRGTYNNNSFTD--DSG 852
Query: 945 YANEVSKSKYFKSMQAEIQTVEEEQ------QKPRPRKFQLSEIWKLQRPEFAMIIFGFI 998
Y VSKSKY A I+T+ EE+ K + +F++SEIW+LQR E ++I GF+
Sbjct: 853 YDVSVSKSKY-----AGIRTIHEEEAETKDNDKAKDTRFRISEIWELQRREGPLLILGFL 907
Query: 999 LGMHAGAILSIFPLILGQALQVYFDDTASTLRRDVRYLSLALVGLGFGCIIFMTGQQGFC 1058
+G++AGA+ S+FPL+LGQA+QVYFD +RR V YL+LA+VGLG CI+ MTGQQGFC
Sbjct: 908 MGINAGAVFSVFPLLLGQAVQVYFDPDTEKMRRQVGYLALAVVGLGVACILTMTGQQGFC 967
Query: 1059 GWAGTKLTMRVRELLFRSILKQEPGWFDFEENSTGVLVSRLSIDSISFRSVLGDRFSVLL 1118
GWAG +LTMRVR+ LFR+I++QEP WFD ++N+ GVLV+RL+ D+++FRS+ GDR++VLL
Sbjct: 968 GWAGARLTMRVRDRLFRAIMRQEPAWFDEDDNAMGVLVTRLARDAVAFRSMFGDRYAVLL 1027
Query: 1119 MGLSSAAVGLGVSLVLNWRLTLVAAALTPFTLGASYLSLIINVGPKIDNSSYAKASSIAS 1178
M + SA VGLG+ L+ RLTLVA A TP TLGASYL+L+IN+G + D+ +YA+ASSIA+
Sbjct: 1028 MAVGSAGVGLGICFGLDVRLTLVAMACTPLTLGASYLNLLINLGARSDDGAYARASSIAA 1087
Query: 1179 GAVSNIRTVTTFSAQEQIINSFDKALSEPKKKSVKRSQILGLTLGFSQGAMYVAYTFTLW 1238
GAVSN+RTV AQ I+ +F++AL P K+ +RSQ +GL LG SQGAMY AYT TLW
Sbjct: 1088 GAVSNVRTVAALCAQGGIVGTFNRALDGPSAKAQRRSQYMGLILGISQGAMYGAYTVTLW 1147
Query: 1239 FGAYLVKQGHASFGVVYKIFLILVLSSFSVGQLAGLAPDTSMAATAIPAVLQITKRKPLI 1298
GAY +K+G +SFG V KIFLILVLSSFSVGQLAGLAPDTS A TAI +L I KR+P I
Sbjct: 1148 AGAYFIKKGQSSFGDVSKIFLILVLSSFSVGQLAGLAPDTSGAPTAIAGILAILKRRPAI 1207
Query: 1299 --DNVKGRKLERSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKS 1356
+ K R ++ KP+ +EL+ V F YPSRPE+TVL DF L+VK GS VALVG SGSGKS
Sbjct: 1208 SEEGSKRRAIKEGKPMDVELRKVVFAYPSRPEITVLNDFSLRVKSGSTVALVGASGSGKS 1267
Query: 1357 TVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPK 1416
TV+WL+QRFYDP G VM+ G+D+R++++KWLR + ALVGQEPALF+G+IR+NI GNPK
Sbjct: 1268 TVVWLVQRFYDPLGGTVMVGGLDVRDLDLKWLRGECALVGQEPALFSGSIRENIGFGNPK 1327
Query: 1417 ASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLL 1476
ASWAEIE+AA+EA IHKFI+ LPQGY+TQVGESGVQLSGGQKQRIAIARAILKGSR+LLL
Sbjct: 1328 ASWAEIEDAAKEANIHKFIAGLPQGYDTQVGESGVQLSGGQKQRIAIARAILKGSRILLL 1387
Query: 1477 DEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHET 1536
DEASSALDLESEKHVQ+ALR+VS+RATTI VAHRLST+REA+ IAVV G VE+GSH+
Sbjct: 1388 DEASSALDLESEKHVQEALRRVSRRATTITVAHRLSTVREADRIAVVSAGRTVEFGSHDG 1447
Query: 1537 LLASHLNGVYASLVRAETEANAFS 1560
LLASH +G+YA++V+AE EA AF+
Sbjct: 1448 LLASHRDGLYAAMVKAEIEAQAFA 1471
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|414588090|tpg|DAA38661.1| TPA: hypothetical protein ZEAMMB73_035779 [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 1626 bits (4210), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 815/1346 (60%), Positives = 1031/1346 (76%), Gaps = 54/1346 (4%)
Query: 254 KHNNNVHELSQNGHDHGGHHRMSYKMDNLDDEFLHGHRGHD--------------AWLST 299
K++++ H +S+ +S+ DN D ++ RG + S
Sbjct: 187 KYSDDTHYVSRE---------VSFSRDNRDKLYVPPRRGRNDAPPSFGYDDDASATSYSR 237
Query: 300 SHHYGGG-----DGRNNDPELVSPYNEDDAEVAKPVGLFSLFKYSTKLDMILVLLGCIGA 354
S HYGGG + D +L E + V KPV L LFKYS LD++L++LGC+GA
Sbjct: 238 SQHYGGGVDEDDYDLDLDLDLDDDDGEIEVRVGKPVSLAGLFKYSAPLDVVLLVLGCVGA 297
Query: 355 LINGGALPWYSYFFGNFVNKIANESSDPDKTQMMKDAEKICLLMTVLAAIVMMGAYLEIT 414
++NGG+LPWYSY FGNF+NK+ N DK+QMMKD ++I M LAA V++GAYLEI
Sbjct: 298 MVNGGSLPWYSYLFGNFINKVVNT----DKSQMMKDVKQISFYMLFLAAAVVVGAYLEIM 353
Query: 415 CWRLVGERSAQRIRTKYLRAVLRQDIAFFDTEVSTSDIMHGISSDIAQIQEVMGEKVAHF 474
CWR++GERSA R+R +YL+AVLRQ++ FFDTEVST ++M ISSD+AQIQ+VMG+K+A F
Sbjct: 354 CWRMIGERSALRMRREYLKAVLRQEVGFFDTEVSTGEVMQSISSDVAQIQDVMGDKMAGF 413
Query: 475 AHNIFTFICGYTVGFLRSWKVSLVVLSVTPLMMFCGMAYKAVYVGLTSKEEASYRRAGSV 534
H++FTFI GY VGF +SWK++L V + TP+MM CG+AYKA+Y GLT+K+EASY+RAGSV
Sbjct: 414 VHHVFTFIFGYAVGFSKSWKIALAVFAATPVMMSCGLAYKAIYGGLTAKDEASYKRAGSV 473
Query: 535 AEQAISSIRTVFSFVAEDHFAVRYAGLLADSIPFGAKLGFAKGAGMGVIYLVTYATWALA 594
A+QAISS+RTV SFV ED A RYA L + P G K+GFAKGAGMGVIYLVTY+ WALA
Sbjct: 474 AQQAISSVRTVLSFVMEDRLADRYAERLDRAAPIGIKMGFAKGAGMGVIYLVTYSQWALA 533
Query: 595 FWYGSILVARKELSGGAAIACFFGVNVGGRGLALSLSYFAQFAQGTVAATRVFEIIDRVP 654
W GS LVAR ++ GG AIACFFGV VGGRGLALSLSY+AQFAQG AA RVFEI+DRVP
Sbjct: 534 LWLGSRLVARGDIKGGDAIACFFGVMVGGRGLALSLSYYAQFAQGRAAAGRVFEIVDRVP 593
Query: 655 EIDPYNSEGRKLSSVSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGK 714
+ID Y GR LSSV G+IEFK V FAYPSRPE ++L +LNL IP+ K LALVG SGGGK
Sbjct: 594 DIDAYGGGGRSLSSVRGRIEFKDVEFAYPSRPEAMVLYNLNLTIPAGKMLALVGVSGGGK 653
Query: 715 STVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKE 774
ST+FAL+ERFYDPT+G ITLDG DL SL ++WLR+Q+G+VGQEP+LFATSI+ENV+MGKE
Sbjct: 654 STMFALLERFYDPTRGTITLDGQDLSSLNLRWLRSQMGLVGQEPVLFATSIIENVMMGKE 713
Query: 775 NATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILL 834
+AT +EA+AAC A+AH+F+ LP GYDTQVGDRGTQLSGGQKQRIALARA+I+DPR+LL
Sbjct: 714 DATRQEAIAACAKANAHTFVLGLPDGYDTQVGDRGTQLSGGQKQRIALARAIIRDPRVLL 773
Query: 835 LDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHR 894
LDEPTSALD+ESE++VQQ+I+++S GRT +VIAHRLATV+NA+TI VLD+G+VVE G H
Sbjct: 774 LDEPTSALDAESEAVVQQSIERLSAGRTVVVIAHRLATVRNADTIAVLDRGAVVESGRHD 833
Query: 895 QLLERGGAYHDLVKLASEA-VSQPQSKQKDAKRGI-----------EFSIYEK-SVIEVS 941
LL RGG Y LVKLAS++ S + +K + ++Y+ S + +S
Sbjct: 834 DLLARGGPYAALVKLASDSGRSSGDAGRKSPAAPAGAATAYNSFTDDSAVYDDMSSLSMS 893
Query: 942 RSRYANEVSKSKYFKSMQAEIQTVEEEQQKPRPRKFQLSEIWKLQRPEFAMIIFGFILGM 1001
+ RY ++ + +AE V + + K +SEIWKLQR E +++ GF++G+
Sbjct: 894 KPRYGGGARRT--YPRGEAEEDGVGKTKDDASNSKVSVSEIWKLQRREGPLLVLGFLMGI 951
Query: 1002 HAGAILSIFPLILGQALQVYFDDTASTLRRDVRYLSLALVGLGFGCIIFMTGQQGFCGWA 1061
+AGA+ S+FPL+LGQA++VYFD S ++R V L+ A+VGLG CI+ MTGQQG CGWA
Sbjct: 952 NAGAVFSVFPLLLGQAVEVYFDSDTSKMKRQVGALATAVVGLGVACILAMTGQQGLCGWA 1011
Query: 1062 GTKLTMRVRELLFRSILKQEPGWFDFEENSTGVLVSRLSIDSISFRSVLGDRFSVLLMGL 1121
G +LTMRVR+ LFR+IL+QEP WFD E+N+ GVLV+RL+ D+++FRS+ GDR++VLLM +
Sbjct: 1012 GARLTMRVRDRLFRAILRQEPAWFDEEDNAMGVLVTRLARDAVAFRSMFGDRYAVLLMAV 1071
Query: 1122 SSAAVGLGVSLVLNWRLTLVAAALTPFTLGASYLSLIINVGPKIDNSSYAKASSIASGAV 1181
SA VGLG+ L+WRLTLVA TP TLGASYL+L+INVGP+ D+ +YA+ASSIA+GAV
Sbjct: 1072 GSAGVGLGICFALDWRLTLVAMGCTPLTLGASYLNLLINVGPRADDGAYARASSIAAGAV 1131
Query: 1182 SNIRTVTTFSAQEQIINSFDKALSEPKKKSVKRSQILGLTLGFSQGAMYVAYTFTLWFGA 1241
SN+RTV AQ I+ +F++AL P K+ +RSQ++G+ LG SQGAMY AYT TLW GA
Sbjct: 1132 SNVRTVAALCAQGNIVGAFNRALDGPASKARRRSQVMGVILGLSQGAMYGAYTATLWAGA 1191
Query: 1242 YLVKQGHASFGVVYKIFLILVLSSFSVGQLAGLAPDTSMAATAIPAVLQITKRKPLIDNV 1301
+K+ + FG V KIFLILVLSSFSVGQLAGLAPDTS A AI +L I KR+P I +
Sbjct: 1192 LFIKRDLSKFGDVSKIFLILVLSSFSVGQLAGLAPDTSGAPVAIAGILSILKRRPAISDE 1251
Query: 1302 KG-------RKLERSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSG 1354
G R ++ +P+ +ELK V F YPSRP+VTVL +F ++VK GS VA+VG SGSG
Sbjct: 1252 DGSGSGKRRRMIKDGRPIEVELKRVVFAYPSRPDVTVLNEFSVRVKAGSTVAVVGASGSG 1311
Query: 1355 KSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGN 1414
KSTV+WL+QRFYDP GKVM+ G+D+RE+++KWLR + ALV QEPALF+G+IR+NI GN
Sbjct: 1312 KSTVVWLVQRFYDPAGGKVMVGGIDVRELDLKWLRGECALVSQEPALFSGSIRENIGFGN 1371
Query: 1415 PKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVL 1474
PKASWAEIEEAA+EA IHKFI+ LPQGY+TQVGESGVQLSGGQKQRIAIARAI+K SR+L
Sbjct: 1372 PKASWAEIEEAAKEANIHKFIAGLPQGYDTQVGESGVQLSGGQKQRIAIARAIVKQSRIL 1431
Query: 1475 LLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGSH 1534
LLDEASSALDLESEKHVQ+ALRKVS+RATTIVVAHRLST+REA+ IAVV G VVE+G H
Sbjct: 1432 LLDEASSALDLESEKHVQEALRKVSRRATTIVVAHRLSTVREADRIAVVAGGRVVEFGGH 1491
Query: 1535 ETLLASHLNGVYASLVRAETEANAFS 1560
+ LLA+H +G+YA++V+AE EA AF+
Sbjct: 1492 QELLATHRDGLYAAMVKAEVEAQAFA 1517
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1560 | ||||||
| TAIR|locus:2090734 | 1252 | ABCB19 "ATP-binding cassette B | 0.782 | 0.975 | 0.407 | 2.5e-246 | |
| UNIPROTKB|Q7EZL2 | 1344 | P0705A05.112-2 "Putative P-gly | 0.780 | 0.905 | 0.394 | 1.7e-244 | |
| TAIR|locus:2057961 | 1286 | ABCB1 "ATP-binding cassette B1 | 0.785 | 0.952 | 0.396 | 2.4e-243 | |
| UNIPROTKB|Q0JCP1 | 1259 | Os04g0459000 "Os04g0459000 pro | 0.791 | 0.980 | 0.397 | 3.1e-241 | |
| TAIR|locus:2196145 | 1278 | ABCB11 "ATP-binding cassette B | 0.785 | 0.959 | 0.393 | 8.2e-241 | |
| TAIR|locus:2120805 | 1273 | ABCB2 "ATP-binding cassette B2 | 0.782 | 0.958 | 0.396 | 8.8e-237 | |
| TAIR|locus:2141350 | 1229 | ABCB3 "ATP-binding cassette B3 | 0.782 | 0.992 | 0.385 | 1.2e-234 | |
| TAIR|locus:2141365 | 1230 | ABCB5 "ATP-binding cassette B5 | 0.775 | 0.983 | 0.391 | 1.9e-234 | |
| TAIR|locus:2019958 | 1227 | PGP10 "P-glycoprotein 10" [Ara | 0.383 | 0.488 | 0.416 | 1.9e-234 | |
| DICTYBASE|DDB_G0293438 | 1397 | abcB2 "ABC transporter B famil | 0.639 | 0.714 | 0.352 | 1.1e-233 |
| TAIR|locus:2090734 ABCB19 "ATP-binding cassette B19" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2373 (840.4 bits), Expect = 2.5e-246, P = 2.5e-246
Identities = 508/1246 (40%), Positives = 732/1246 (58%)
Query: 323 DAEVAKPVGL--FSLFKYSTKLDMILVLLGCIGALINGGALPWYSYFFGNFVNKIANESS 380
+AE K L F LF ++ K D +L+ +G +GA+++G ++P + FG VN
Sbjct: 15 EAEKKKEQSLPFFKLFSFADKFDYLLMFVGSLGAIVHGSSMPVFFLLFGQMVNGFGKNQM 74
Query: 381 DPDKTQMMKDAEKICLLMTVLAAIVMMGAYLEITCWRLVGERSAQRIRTKYLRAVLRQDI 440
D QM+ + + L L +V +Y EI CW GER +R KYL AVL+QD+
Sbjct: 75 DLH--QMVHEVSRYSLYFVYLGLVVCFSSYAEIACWMYSGERQVAALRKKYLEAVLKQDV 132
Query: 441 AFFDTEVSTSDIMHGISSDIAQIQEVMGEKVAHFAHNIFTFICGYTVGFLRSWKVSLVVL 500
FFDT+ T DI+ +S+D +Q+ + EKV +F H + TF+ G VGF+ +WK++L+ +
Sbjct: 133 GFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWKLALLSV 192
Query: 501 SVTPLMMFCGMAYKAVYVGLTSKEEASYRRAGSVAEQAISSIRTVFSFVAEDHFAVRYAG 560
+V P + F G Y G+TSK SY AG +AEQAI+ +RTV+S+V E Y+
Sbjct: 193 AVIPGIAFAGGLYAYTLTGITSKSRESYANAGVIAEQAIAQVRTVYSYVGESKALNAYSD 252
Query: 561 LLADSIPXXXXXXXXXXXXXXVIYLVTYATWALAFWYGSILVARKELSGGAAIACFFGVN 620
+ ++ Y + +WAL FWY + + + GG A F
Sbjct: 253 AIQYTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQTDGGKAFTAIFSAI 312
Query: 621 VGGRGLALSLSYFAQFAQGTVAATRVFEIIDRVPEI--DPYNSEGRKLSSVSGKIEFKGV 678
VGG L S S F++G A ++ EII++ P I DP +G+ L V G IEFK V
Sbjct: 313 VGGMSLGQSFSNLGAFSKGKAAGYKLMEIINQRPTIIQDPL--DGKCLDQVHGNIEFKDV 370
Query: 679 TFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHD 738
TF+YPSRP+ +I R+ N+ PS KT+A+VG SG GKSTV +LIERFYDP G I LDG +
Sbjct: 371 TFSYPSRPDVMIFRNFNIFFPSGKTVAVVGGSGSGKSTVVSLIERFYDPNSGQILLDGVE 430
Query: 739 LKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENXXXXXXXXXXXXXXXHSFISELP 798
+K+LQ+K+LR QIG+V QEP LFAT+ILEN+L GK + HSFI+ LP
Sbjct: 431 IKTLQLKFLREQIGLVNQEPALFATTILENILYGKPDATMVEVEAAASAANAHSFITLLP 490
Query: 799 LGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKIS 858
GYDTQVG+RG QLSGGQKQRIA+ARAM+KDP+ILLLDE TSALD+ SESIVQ+A+D++
Sbjct: 491 KGYDTQVGERGVQLSGGQKQRIAIARAMLKDPKILLLDEATSALDASSESIVQEALDRVM 550
Query: 859 VGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLERGGAYHDLVK----LASEAV 914
VGRTT+V+AHRL T++N ++I V+ QG VVE G H +L+ + GAY L++ + +
Sbjct: 551 VGRTTVVVAHRLCTIRNVDSIAVIQQGQVVETGTHEELIAKSGAYASLIRFQEMVGTRDF 610
Query: 915 SQPQSKQKDAKRGIEFSIYEKSVIEVSRSRYANEVSKSKYFKSMQAEIQTVE--EEQQKP 972
S P +++ + R + S+ KS+ RS +S S Y I+ + E +K
Sbjct: 611 SNPSTRRTRSTR-LSHSLSTKSLS--LRSGSLRNLSYS-YSTGADGRIEMISNAETDRKT 666
Query: 973 RPRKFQLSEIWKLQRPEFAMIIFGFILGMHAGAILSIFPLILGQALQV-YFDDTASTLRR 1031
R + + KL PE+ I G + + +G I F +++ ++V Y+ D S R+
Sbjct: 667 RAPENYFYRLLKLNSPEWPYSIMGAVGSILSGFIGPTFAIVMSNMIEVFYYTDYDSMERK 726
Query: 1032 DVRYLSLALVGLGFGCIIFMTGQQGFCGWAGTKLTMRVRELLFRSILKQEPGWFDFEENS 1091
Y+ + +G G + Q F G LT RVR ++ +IL+ E GWFD +E++
Sbjct: 727 TKEYVFI-YIGAGLYAVGAYLIQHYFFSIMGENLTTRVRRMMLSAILRNEVGWFDEDEHN 785
Query: 1092 TGVLVSRLSIDSISFRSVLGDRFSVLLMGLSSAAVGLGVSLVLNWRLTLVAAALTPFTLG 1151
+ ++ +RL+ D+ +S + +R SV+L ++S V+ ++ WR++L+ P +
Sbjct: 786 SSLIAARLATDAADVKSAIAERISVILQNMTSLLTSFIVAFIVEWRVSLLILGTFPLLVL 845
Query: 1152 ASYLSLIINVGPKIDNS-SYAKASSIASGAVSNIRTVTTFSAQEQIINSFDKALSEPKKK 1210
A++ + G D + ++AK S IA VSNIRTV F+AQ +I++ F L P+K+
Sbjct: 846 ANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQSKILSLFCHELRVPQKR 905
Query: 1211 SVKRSQILGLTLGFSQGAMYVAYTFTLWFGAYLVKQGHASFGVVYKIFLILVLSSFSVGQ 1270
S+ RSQ G G SQ A+Y + LW+GA+LV +G ++F V K+F++LV+++ SV +
Sbjct: 906 SLYRSQTSGFLFGLSQLALYGSEALILWYGAHLVSKGVSTFSKVIKVFVVLVITANSVAE 965
Query: 1271 LAGLAPDTSMAATAIPAVLQITKRKPLID--NVKGRKLERSKPLGIELKMVTFTYPSRPE 1328
LAP+ A+ +V + R+ ID + +E + IE + V F YPSRP+
Sbjct: 966 TVSLAPEIIRGGEAVGSVFSVLDRQTRIDPDDADADPVETIRG-DIEFRHVDFAYPSRPD 1024
Query: 1329 VTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWL 1388
V V +DF L+++ G ALVG SGSGKS+VI +I+RFYDP GKVMI+G D+R +N+K L
Sbjct: 1025 VMVFRDFNLRIRAGHSQALVGASGSGKSSVIAMIERFYDPLAGKVMIDGKDIRRLNLKSL 1084
Query: 1389 RKQTALVGQEPALFAGTIRDNIALGNPKXXXXXXXXXXXXXYIHKFISSLPQGYETQVGE 1448
R + LV QEPALFA TI DNIA G H FIS LP+GY+T VGE
Sbjct: 1085 RLKIGLVQQEPALFAATIFDNIAYGKDGATESEVIDAARAANAHGFISGLPEGYKTPVGE 1144
Query: 1449 SGVQLSGGQKQRIAIARAILKGSRVXXXXXXXXXXXXXXXKHVQDALRKVSKRATTIVVA 1508
GVQLSGGQKQRIAIARA+LK V +Q+AL ++ + TT+VVA
Sbjct: 1145 RGVQLSGGQKQRIAIARAVLKNPTVLLLDEATSALDAESECVLQEALERLMRGRTTVVVA 1204
Query: 1509 HRLSTIREANMIAVVRDGAVVEYGSHETLLASHLNGVYASLVRAET 1554
HRLSTIR + I V++DG +VE GSH L+ S G Y+ L++ +T
Sbjct: 1205 HRLSTIRGVDCIGVIQDGRIVEQGSHSELV-SRPEGAYSRLLQLQT 1249
|
|
| UNIPROTKB|Q7EZL2 P0705A05.112-2 "Putative P-glycoprotein 1" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 2336 (827.4 bits), Expect = 1.7e-244, Sum P(2) = 1.7e-244
Identities = 490/1241 (39%), Positives = 733/1241 (59%)
Query: 329 PVGLFSLFKYSTKLDMILVLLGCIGALINGGALPWYSYFFGNFVNKIANESSDPDKTQMM 388
P L LF ++ LD +L+ LG +GAL++G +LP + FF + V+ + ++ PD M+
Sbjct: 92 PAPLRQLFSFADGLDYVLMTLGTLGALVHGCSLPVFLRFFADLVDSFGSHAAHPDT--ML 149
Query: 389 KDAEKICLLMTVLAAIVMMGAYLEITCWRLVGERSAQRIRTKYLRAVLRQDIAFFDTEVS 448
+ K V+ A + ++ EI+CW GER + R+R +YL A L QD++FFDT+V
Sbjct: 150 RLVVKYAFYFLVVGAAIWASSWAEISCWMWTGERQSTRMRIRYLHAALHQDVSFFDTDVR 209
Query: 449 TSDIMHGISSDIAQIQEVMGEKVAHFAHNIFTFICGYTVGFLRSWKVSLVVLSVTPLMMF 508
TSD++H I++D +Q+ + EK+ + H + TF+ G+ VGF +W+++LV L+V PL+
Sbjct: 210 TSDVIHAINADAVVVQDAISEKLGNLIHYLATFVSGFVVGFTAAWQLALVTLAVVPLIAV 269
Query: 509 CGMAYKAVYVGLTSKEEASYRRAGSVAEQAISSIRTVFSFVAEDHFAVRYAGLLADSIPX 568
G A L+S+ + + A +AEQA++ IR V SFV E+ Y+ LA +
Sbjct: 270 IGGLSAAALAKLSSRSQDALSDASGIAEQALAQIRIVQSFVGEERVMRAYSAALAVAQRI 329
Query: 569 XXXXXXXXXXXXXVIYLVTYATWALAFWYGSILVARKELSGGAAIACFFGVNVGGRGLAL 628
Y + +AL WYG LV R +GG AIA F V +GG L
Sbjct: 330 GYRSGFAKGIGLGGTYFTVFCCYALLLWYGGHLVRRAHTNGGLAIATMFSVMIGGLALGQ 389
Query: 629 SLSYFAQFAQGTVAATRVFEIIDRVPEIDPYNSEGRKLSSVSGKIEFKGVTFAYPSRPET 688
S A FA+ VAA ++F +++ P ++ G +L +V+G++E + V F+YPSRP+
Sbjct: 390 SAPSMAAFAKARVAAAKIFRMMEHKPSME--REGGVELEAVTGRVELRDVEFSYPSRPDV 447
Query: 689 VILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLR 748
ILR L+L +P+ KT+ALVG+SG GKSTV +LIERFY+P G I LDGHDL+ L ++WLR
Sbjct: 448 GILRGLSLSVPAGKTIALVGSSGSGKSTVVSLIERFYEPNAGTILLDGHDLRDLNLRWLR 507
Query: 749 TQIGMVGQEPILFATSILENVLMGKENXXXXXXXXXXXXXXXHSFISELPLGYDTQVGDR 808
QIG+V QEP LFAT+I EN+L+G++ HSFI +LP Y+TQVG+R
Sbjct: 508 RQIGLVSQEPALFATTIRENLLLGRDGATQEELEEAARVANAHSFIVKLPDAYNTQVGER 567
Query: 809 GTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAH 868
G QLSGGQKQRIA+ARAM+++P ILLLDE TSALDSESE +VQ+A+D+ +GRTT+VIAH
Sbjct: 568 GLQLSGGQKQRIAIARAMLRNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAH 627
Query: 869 RLATVKNANTIVVLDQGSVVEIGNHRQLLERG-GAYHDLVKLASEA-----VSQPQSKQK 922
RL+T++ A+ + VL G++ E+G H +L+ RG G Y L+++ +A V+ +S +
Sbjct: 628 RLSTIRKADLVAVLQGGAISEVGTHDELMARGDGTYARLIRMQEQAHEAALVAARRSSAR 687
Query: 923 --DAKRGIEFSIYEKSVIEVSRSRYANEVSKSKYFKSMQAEIQTVEEEQQKPRPRKFQLS 980
A+ + I ++ RS Y+ +S + + + + + +++QQ + Q S
Sbjct: 688 PSSARNSVSSPIITRNS-SYGRSPYSRRLSDADFITGLGLGVDSKQQQQQ--HYFRVQAS 744
Query: 981 EIWKLQR---PEFAMIIFGFILGMHAGAILSIFPLILGQALQVYFDDTASTLRRDVRYLS 1037
W+L + PE+ + + M G+ +IF +L L VY+ A+ + R +
Sbjct: 745 SFWRLAKMNSPEWGYALVASLGSMVCGSFSAIFAYVLSAVLSVYYAPDAAYMDRQIAKYC 804
Query: 1038 LALVGLGFGCIIFMTGQQGFCGWAGTKLTMRVRELLFRSILKQEPGWFDFEENSTGVLVS 1097
L+G+ ++F T Q F G LT RVRE + ++L+ E WFD E+NS+ + +
Sbjct: 805 YLLIGMSSAALLFNTVQHLFWDTVGENLTKRVRERMLAAVLRNEIAWFDMEDNSSARIAA 864
Query: 1098 RLSIDSISFRSVLGDRFSVLLMGLSSAAVGLGVSLVLNWRLTLVAAALTPFTLGASYLSL 1157
RL++D+ + RS +GDR S+++ + V VL WRL LV A+ P + A+ L
Sbjct: 865 RLALDAQNVRSAIGDRISIIVQNSALMLVACTAGFVLQWRLALVLLAVFPLVVAATVLQK 924
Query: 1158 IINVGPKID-NSSYAKASSIASGAVSNIRTVTTFSAQEQIINSFDKALSEPKKKSVKRSQ 1216
+ G D ++A+A+ IA AV+N+RTV F ++ +I+ F+ L+ P ++ + Q
Sbjct: 925 MFLKGFSGDLERAHARATQIAGEAVANVRTVAAFGSEAKIVGLFEANLAGPLRRCFWKGQ 984
Query: 1217 ILGLTLGFSQGAMYVAYTFTLWFGAYLVKQGHASFGVVYKIFLILVLSSFSVGQLAGLAP 1276
I G G +Q +Y +Y LW+ A+LVK G + F ++F++L++S+ + LAP
Sbjct: 985 IAGSGYGVAQFLLYASYALGLWYAAWLVKHGVSDFSKTIRVFMVLMVSANGAAETLTLAP 1044
Query: 1277 DTSMAATAIPAVLQITKRKPLI--DNVKGRKLERSKPLG-IELKMVTFTYPSRPEVTVLK 1333
D A+ AV + R+ I D+V + +P G +ELK V F YPSRPEV V +
Sbjct: 1045 DFVKGGRAMQAVFEAMDRRTEIEPDDVDAAAVPE-RPRGEVELKHVDFAYPSRPEVQVFR 1103
Query: 1334 DFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTA 1393
D L+ + G +ALVG SG GKS+V+ L+QRFY+PN G+V+++G DLR+ N++ LR+ A
Sbjct: 1104 DLSLRARAGRTLALVGASGCGKSSVLALVQRFYEPNSGRVLLDGRDLRKFNLRSLRRAMA 1163
Query: 1394 LVGQEPALFAGTIRDNIALGNPKXXXXXXXXXXXXXYIHKFISSLPQGYETQVGESGVQL 1453
LV QEP LFA TI DNIA G HKFIS+LP+GY T VGE GVQL
Sbjct: 1164 LVPQEPFLFAATIHDNIAYGREGATEAEVVEAATAANAHKFISALPEGYGTLVGERGVQL 1223
Query: 1454 SGGQKQRIAIARAILKGSRVXXXXXXXXXXXXXXXKHVQDALRKVSKRA-TTIVVAHRLS 1512
SGGQ+QRIAIARA++K + + + VQ+AL S TTIVVAHRL+
Sbjct: 1224 SGGQRQRIAIARALVKQAPILLLDEATSALDAESERSVQEALASSSGSGRTTIVVAHRLA 1283
Query: 1513 TIREANMIAVVRDGAVVEYGSHETLLASHLNGVYASLVRAE 1553
T+R A+ IAV+ DG V E GSH LL H +G YA +++ +
Sbjct: 1284 TVRNAHTIAVIDDGKVAEQGSHSHLLNHHPDGCYARMLQLQ 1324
|
|
| TAIR|locus:2057961 ABCB1 "ATP-binding cassette B1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2345 (830.5 bits), Expect = 2.4e-243, P = 2.4e-243
Identities = 495/1247 (39%), Positives = 737/1247 (59%)
Query: 324 AEVAKPVGLFSLFKYSTKLDMILVLLGCIGALINGGALPWYSYFFGNFVNKIANESSDPD 383
AE+ + V LF+++ LD +L+ +G +GA ++G +LP + FF + VN + S++ +
Sbjct: 22 AEI-RGVAFKELFRFADGLDYVLMGIGSVGAFVHGCSLPLFLRFFADLVNSFGSNSNNVE 80
Query: 384 KTQMMKDAEKICLLMTVLAAIVMMGAYLEITCWRLVGERSAQRIRTKYLRAVLRQDIAFF 443
K MM++ K L V+ A + ++ EI+CW GER ++R KYL A L QDI FF
Sbjct: 81 K--MMEEVLKYALYFLVVGAAIWASSWAEISCWMWSGERQTTKMRIKYLEAALNQDIQFF 138
Query: 444 DTEVSTSDIMHGISSDIAQIQEVMGEKVAHFAHNIFTFICGYTVGFLRSWKVSLVVLSVT 503
DTEV TSD++ I++D +Q+ + EK+ +F H + TF+ G+ VGF W+++LV L+V
Sbjct: 139 DTEVRTSDVVFAINTDAVMVQDAISEKLGNFIHYMATFVSGFIVGFTAVWQLALVTLAVV 198
Query: 504 PLMMFCGMAYKAVYVGLTSKEEASYRRAGSVAEQAISSIRTVFSFVAEDHFAVRYAGLLA 563
PL+ G + L++K + S +AG++ EQ + IR V +FV E + Y+ L
Sbjct: 199 PLIAVIGGIHTTTLSKLSNKSQESLSQAGNIVEQTVVQIRVVMAFVGESRASQAYSSALK 258
Query: 564 DSIPXXXXXXXXXXXXXXVIYLVTYATWALAFWYGSILVARKELSGGAAIACFFGVNVGG 623
+ Y V + +AL WYG LV +GG AIA F V +GG
Sbjct: 259 IAQKLGYKTGLAKGMGLGATYFVVFCCYALLLWYGGYLVRHHLTNGGLAIATMFAVMIGG 318
Query: 624 RGLALSLSYFAQFAQGTVAATRVFEIIDRVPEIDPYNSEGRKLSSVSGKIEFKGVTFAYP 683
L S A FA+ VAA ++F IID P I+ + G +L SV+G +E K V F+YP
Sbjct: 319 LALGQSAPSMAAFAKAKVAAAKIFRIIDHKPTIERNSESGVELDSVTGLVELKNVDFSYP 378
Query: 684 SRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQ 743
SRP+ IL + L +P+ KT+ALVG+SG GKSTV +LIERFYDP G + LDG DLK+L+
Sbjct: 379 SRPDVKILNNFCLSVPAGKTIALVGSSGSGKSTVVSLIERFYDPNSGQVLLDGQDLKTLK 438
Query: 744 VKWLRTQIGMVGQEPILFATSILENVLMGKENXXXXXXXXXXXXXXXHSFISELPLGYDT 803
++WLR QIG+V QEP LFATSI EN+L+G+ + HSFI +LP G+DT
Sbjct: 439 LRWLRQQIGLVSQEPALFATSIKENILLGRPDADQVEIEEAARVANAHSFIIKLPDGFDT 498
Query: 804 QVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTT 863
QVG+RG QLSGGQKQRIA+ARAM+K+P ILLLDE TSALDSESE +VQ+A+D+ +GRTT
Sbjct: 499 QVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTT 558
Query: 864 IVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLERG--GAYHDLVKL---ASE-AVSQP 917
++IAHRL+T++ A+ + VL QGSV EIG H +L +G G Y L+K+ A E A+S
Sbjct: 559 LIIAHRLSTIRKADLVAVLQQGSVSEIGTHDELFSKGENGVYAKLIKMQEAAHETAMSNA 618
Query: 918 Q---SKQKDAKRGIEFSIYEKSVIEVSRSRYANEVSK-SKYFKSMQAEIQTVEEEQQKPR 973
+ ++ A+ + I ++ RS Y+ +S S S+ + + + +
Sbjct: 619 RKSSARPSSARNSVSSPIMTRNS-SYGRSPYSRRLSDFSTSDFSLSIDASSYPNYRNEKL 677
Query: 974 PRKFQLSEIWKLQR---PEFAMIIFGFILGMHAGAILSIFPLILGQALQVYFD-DTASTL 1029
K Q + W+L + PE+ + G + + G++ + F +L L VY++ D +
Sbjct: 678 AFKDQANSFWRLAKMNSPEWKYALLGSVGSVICGSLSAFFAYVLSAVLSVYYNPDHEYMI 737
Query: 1030 RRDVRYLSLALVGLGFGCIIFMTGQQGFCGWAGTKLTMRVRELLFRSILKQEPGWFDFEE 1089
++ +Y L L+GL ++F T Q F G LT RVRE + ++LK E WFD EE
Sbjct: 738 KQIDKYCYL-LIGLSSAALVFNTLQHSFWDIVGENLTKRVREKMLSAVLKNEMAWFDQEE 796
Query: 1090 NSTGVLVSRLSIDSISFRSVLGDRFSVLLMGLSSAAVGLGVSLVLNWRLTLVAAALTPFT 1149
N + + +RL++D+ + RS +GDR SV++ + V VL WRL LV A+ P
Sbjct: 797 NESARIAARLALDANNVRSAIGDRISVIVQNTALMLVACTAGFVLQWRLALVLVAVFPVV 856
Query: 1150 LGASYLSLIINVGPKID-NSSYAKASSIASGAVSNIRTVTTFSAQEQIINSFDKALSEPK 1208
+ A+ L + G D +++AK + +A A++N+RTV F+++ +I+ + L P
Sbjct: 857 VAATVLQKMFMTGFSGDLEAAHAKGTQLAGEAIANVRTVAAFNSEAKIVRLYTANLEPPL 916
Query: 1209 KKSVKRSQILGLTLGFSQGAMYVAYTFTLWFGAYLVKQGHASFGVVYKIFLILVLSSFSV 1268
K+ + QI G G +Q +Y +Y LW+ ++LVK G + F ++F++L++S+
Sbjct: 917 KRCFWKGQIAGSGYGVAQFCLYASYALGLWYASWLVKHGISDFSKTIRVFMVLMVSANGA 976
Query: 1269 GQLAGLAPDTSMAATAIPAVLQITKRKPLI--DNVKGRKLERSKPLGIELKMVTFTYPSR 1326
+ LAPD A+ +V ++ RK I D+ + +ELK + F+YPSR
Sbjct: 977 AETLTLAPDFIKGGQAMRSVFELLDRKTEIEPDDPDTTPVPDRLRGEVELKHIDFSYPSR 1036
Query: 1327 PEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVK 1386
P++ + +D L+ + G +ALVG SG GKS+VI LIQRFY+P+ G+VMI+G D+R+ N+K
Sbjct: 1037 PDIQIFRDLSLRARAGKTLALVGPSGCGKSSVISLIQRFYEPSSGRVMIDGKDIRKYNLK 1096
Query: 1387 WLRKQTALVGQEPALFAGTIRDNIALGNPKXXXXXXXXXXXXXYIHKFISSLPQGYETQV 1446
+RK A+V QEP LF TI +NIA G+ HKFIS+LP+GY+T V
Sbjct: 1097 AIRKHIAIVPQEPCLFGTTIYENIAYGHECATEAEIIQAATLASAHKFISALPEGYKTYV 1156
Query: 1447 GESGVQLSGGQKQRIAIARAILKGSRVXXXXXXXXXXXXXXXKHVQDALRKVSKRATTIV 1506
GE GVQLSGGQKQRIAIARA+++ + + + VQ+AL + T+IV
Sbjct: 1157 GERGVQLSGGQKQRIAIARALVRKAEIMLLDEATSALDAESERSVQEALDQACSGRTSIV 1216
Query: 1507 VAHRLSTIREANMIAVVRDGAVVEYGSHETLLASHLNGVYASLVRAE 1553
VAHRLSTIR A++IAV+ DG V E GSH LL +H +G+YA +++ +
Sbjct: 1217 VAHRLSTIRNAHVIAVIDDGKVAEQGSHSHLLKNHPDGIYARMIQLQ 1263
|
|
| UNIPROTKB|Q0JCP1 Os04g0459000 "Os04g0459000 protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 2325 (823.5 bits), Expect = 3.1e-241, P = 3.1e-241
Identities = 502/1262 (39%), Positives = 732/1262 (58%)
Query: 304 GGGDGRNNDPELVSPYNEDDAEVAKPVGLFSLFKYSTKLDMILVLLGCIGALINGGALPW 363
GGG G E V V + V LF ++ LD +L+ G GA+++G A+P
Sbjct: 9 GGGGGGGGGCEAVKK------RVDQSVAFHELFGFADPLDWLLMAAGSAGAVVHGAAMPV 62
Query: 364 YSYFFGNFVNKIA-NESSDPDKTQMMKDAEKICLLMTVLAAIVMMGAYLEITCWRLVGER 422
+ FG +N N+ S +M + K L L +V +YLEI CW GER
Sbjct: 63 FFLLFGELINGFGKNQHS---LRRMTDEVSKYSLYFVYLGLVVCASSYLEIACWMYTGER 119
Query: 423 SAQRIRTKYLRAVLRQDIAFFDTEVSTSDIMHGISSDIAQIQEVMGEKVAHFAHNIFTFI 482
+R +YL AVLRQD+ FFDT+ T D++ +S+D +Q+ +GEKV +F H + TF+
Sbjct: 120 QVGALRRRYLEAVLRQDVGFFDTDARTGDVVFSVSTDTLLVQDAIGEKVGNFIHYLSTFL 179
Query: 483 CGYTVGFLRSWKVSLVVLSVTPLMMFCGMAYKAVYVGLTSKEEASYRRAGSVAEQAISSI 542
G VGF+ +W+++L+ ++V P + F G Y GLTSK SY AG +AEQAI+ +
Sbjct: 180 AGLVVGFVSAWRLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRDSYANAGIIAEQAIAQV 239
Query: 543 RTVFSFVAEDHFAVRYAGLLADSIPXXXXXXXXXXXXXXVIYLVTYATWALAFWYGSILV 602
RTV+S+V E Y+ + +++ Y + +WAL FWY + +
Sbjct: 240 RTVYSYVGESKALNSYSEAIQNTLKLGYKAGMAKGLGIGCTYGIACMSWALVFWYAGVFI 299
Query: 603 ARKELSGGAAIACFFGVNVGGRGLALSLSYFAQFAQGTVAATRVFEIIDRVPEIDPYNSE 662
+ GG A F VGG L S S F++G +A ++ E+I + P I ++
Sbjct: 300 RNGQTDGGKAFTAIFSAIVGGLSLGQSFSNLGAFSKGKIAGYKLLEVIRQRPTIVQDPAD 359
Query: 663 GRKLSSVSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIE 722
GR L V G IEFK V F+YPSRP+ +I R +L P+ KT A+VG SG GKSTV ALIE
Sbjct: 360 GRCLDEVHGNIEFKEVAFSYPSRPDVMIFRDFSLFFPAGKTAAVVGGSGSGKSTVVALIE 419
Query: 723 RFYDPTKGLITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENXXXXXXX 782
RFYDP +G + LD D+K+LQ+KWLR QIG+V QEP LFAT+ILEN+L GK +
Sbjct: 420 RFYDPNQGQVLLDNVDIKTLQLKWLRDQIGLVNQEPALFATTILENILYGKPDATMAEVE 479
Query: 783 XXXXXXXXHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSAL 842
HSFI+ LP GY+TQVG+RG QLSGGQKQRIA+ARAM+K+P+ILLLDE TSAL
Sbjct: 480 AAATSANAHSFIALLPNGYNTQVGERGLQLSGGQKQRIAIARAMLKNPKILLLDEATSAL 539
Query: 843 DSESESIVQQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLERG-- 900
D+ SE+IVQ+A+D++ VGRTT+V+AHRL+T++ + I V+ QG VVE G H +LL +G
Sbjct: 540 DAGSENIVQEALDRLMVGRTTVVVAHRLSTIRCVDMIAVIQQGQVVETGTHDELLAKGSS 599
Query: 901 GAYHDLVKLASEAVSQ----PQSKQKDAKRGIEFSIYEKSVIEVSRSRYANEVSKSKYFK 956
GAY L++ A ++ P +++ + R + S+ +S+ RS +S S Y
Sbjct: 600 GAYAALIRFQEMARNRDFRGPSTRKSRSSR-LSNSLSTRSLS--LRSGSLRNLSYS-YST 655
Query: 957 SMQAEIQTV---EEEQQKPRPRKFQLSEIWKLQRPEFAMIIFGFILGMHAGAILSIFPLI 1013
I+ V + +++ P P+ + ++ KL PE+ I G I + +G I F ++
Sbjct: 656 GADGRIEMVSNADNDRKYPAPKGY-FFKLLKLNAPEWPYTILGAIGSILSGFIGPTFAIV 714
Query: 1014 LGQALQVYFDDTASTLRRDVRYLSLALVGLGFGCIIFMTGQQGFCGWAGTKLTMRVRELL 1073
+ ++V++ + + R R +G G ++ Q F G LT RVR ++
Sbjct: 715 MSNMIEVFYFRDPNAMERKTREYVFIYIGTGLYAVVAYLVQHYFFSIMGENLTTRVRRMM 774
Query: 1074 FRSILKQEPGWFDFEENSTGVLVSRLSIDSISFRSVLGDRFSVLLMGLSSAAVGLGVSLV 1133
+IL+ + GWFD EEN++ ++ +RLS D+ +S + +R SV+L ++S V V +
Sbjct: 775 LAAILRNDVGWFDQEENNSSLVAARLSTDAADVKSAIAERISVILQNMTSLLVSFVVGFI 834
Query: 1134 LNWRLTLVAAALTPFTLGASYLSLIINVGPKIDNS-SYAKASSIASGAVSNIRTVTTFSA 1192
+ WR+ ++ P + A++ + G D + ++AK S IA VSNIRTV F+A
Sbjct: 835 IEWRVAVLILVTFPLLVLANFAQQLSMKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNA 894
Query: 1193 QEQIINSFDKALSEPKKKSVKRSQILGLTLGFSQGAMYVAYTFTLWFGAYLVKQGHASFG 1252
Q+++++ F L P+ S++RSQI G G SQ ++Y + LW+GA+LV+ ++F
Sbjct: 895 QDKVLSLFCTELRVPQMHSLRRSQISGALFGLSQLSLYASEALILWYGAHLVRHHVSTFS 954
Query: 1253 VVYKIFLILVLSSFSVGQLAGLAPDTSMAATAIPAVLQITKRKPLIDNVKGRKLERSKPL 1312
V K+F++LV+++ +V + LAP+ +I +V I + ID +
Sbjct: 955 KVIKVFVVLVITANTVAETVSLAPEIVRGGESIRSVFAILNYRTRIDPDEPETEPVESVR 1014
Query: 1313 G-IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQG 1371
G I+ + V F YPSRP+V V KDF L+++ G ALVG SGSGKSTVI LI+RFYDP G
Sbjct: 1015 GDIDFRHVDFAYPSRPDVMVFKDFSLRIRAGQSQALVGASGSGKSTVIALIERFYDPLAG 1074
Query: 1372 KVMIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKXXXXXXXXXXXXXYI 1431
KVMI+G D+R +NV+ LR + LV QEP LFA +I +NIA G +
Sbjct: 1075 KVMIDGKDIRRLNVRSLRLKIGLVQQEPVLFATSIFENIAYGKDGATEEEVIEAAKVANM 1134
Query: 1432 HKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVXXXXXXXXXXXXXXXKHV 1491
H F+S+LP+GY+T VGE GVQLSGGQKQRIAIARA+LK V +
Sbjct: 1135 HGFVSALPEGYKTPVGERGVQLSGGQKQRIAIARAVLKDPAVLLLDEATSALDAESECVL 1194
Query: 1492 QDALRKVSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETLLASHLNGVYASLVR 1551
Q+AL ++ K T ++VAHRLSTIR + IAVV+DG VVE GSH L+ S +G Y+ L++
Sbjct: 1195 QEALERIMKGRTAVLVAHRLSTIRGVDSIAVVQDGRVVEQGSHGELV-SRPDGAYSRLLQ 1253
Query: 1552 AE 1553
+
Sbjct: 1254 LQ 1255
|
|
| TAIR|locus:2196145 ABCB11 "ATP-binding cassette B11" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2321 (822.1 bits), Expect = 8.2e-241, P = 8.2e-241
Identities = 495/1257 (39%), Positives = 731/1257 (58%)
Query: 321 EDDAEVAKPVGLFSLFKYSTKLDMILVLLGCIGALINGGALPWYSYFFGNFVNKIANESS 380
E E A V + LF ++ D++L++ G IGA+ NG +LP+ + FG+ ++ +
Sbjct: 32 EKSEEKANTVPFYKLFAFADSSDVLLMICGSIGAIGNGMSLPFMTLLFGDLIDSFGKNQN 91
Query: 381 DPDKTQMMKDAEKICLLMTVLAAIVMMGAYLEITCWRLVGERSAQRIRTKYLRAVLRQDI 440
+ D ++ K+CL L + A+L++ CW + GER A RIR+ YL+ +LRQDI
Sbjct: 92 NKDIVDVVS---KVCLKFVYLGLGTLGAAFLQVACWMITGERQAARIRSTYLKTILRQDI 148
Query: 441 AFFDTEVSTSDIMHGISSDIAQIQEVMGEKVAHFAHNIFTFICGYTVGFLRSWKVSLVVL 500
FFD E +T +++ +S D IQ+ MGEKV F + TF+ G+ + F++ W ++LV+L
Sbjct: 149 GFFDVETNTGEVVGRMSGDTVLIQDAMGEKVGKFIQLVSTFVGGFVLAFIKGWLLTLVML 208
Query: 501 SVTPLMMFCGMAYKAVYVGLTSKEEASYRRAGSVAEQAISSIRTVFSFVAEDHFAVRYAG 560
+ PL+ G A + +S+ +A+Y +A +V EQ I SIRTV SF E Y
Sbjct: 209 TSIPLLAMAGAAMALIVTRASSRGQAAYAKAATVVEQTIGSIRTVASFTGEKQAINSYKK 268
Query: 561 LLADSIPXXXXXXXXXXXXXXVIYLVTYATWALAFWYGSILVARKELSGGAAIACFFGVN 620
+ + V++ V ++++ALA W+G ++ K +GGA I V
Sbjct: 269 FITSAYKSSIQQGFSTGLGLGVMFFVFFSSYALAIWFGGKMILEKGYTGGAVINVIIIVV 328
Query: 621 VGGRGLALSLSYFAQFAQGTVAATRVFEIIDRVPEIDPYNSEGRKLSSVSGKIEFKGVTF 680
G L + FA G AA ++FE I R P ID Y+ G+ L + G IE K V F
Sbjct: 329 AGSMSLGQTSPCVTAFAAGQAAAYKMFETIKRKPLIDAYDVNGKVLEDIRGDIELKDVHF 388
Query: 681 AYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLK 740
+YP+RP+ I +L IPS T ALVG SG GKSTV +LIERFYDP G + +DG +LK
Sbjct: 389 SYPARPDEEIFDGFSLFIPSGATAALVGESGSGKSTVISLIERFYDPKSGAVLIDGVNLK 448
Query: 741 SLQVKWLRTQIGMVGQEPILFATSILENVLMGKENXXXXXXXXXXXXXXXHSFISELPLG 800
Q+KW+R++IG+V QEP+LF++SI+EN+ GKEN FI +LP G
Sbjct: 449 EFQLKWIRSKIGLVSQEPVLFSSSIMENIAYGKENATVEEIKAATELANAAKFIDKLPQG 508
Query: 801 YDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVG 860
DT VG+ GTQLSGGQKQRIA+ARA++KDPRILLLDE TSALD+ESE +VQ+A+D++ V
Sbjct: 509 LDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDRVMVN 568
Query: 861 RTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLERG-GAYHDLVKL--------AS 911
RTT+++AHRL+TV+NA+ I V+ +G +VE G+H +LL+ GAY L++L S
Sbjct: 569 RTTVIVAHRLSTVRNADMIAVIHRGKMVEKGSHSELLKDSEGAYSQLIRLQEINKDVKTS 628
Query: 912 EAVSQPQSKQKDAKRGIEFSIYEKSVIEVSRSRYANEVSKSKYFK----SMQAEIQTVEE 967
E S + + K+ +E + SV SR N + + S +A
Sbjct: 629 ELSSGSSFRNSNLKKSMEGT---SSVGNSSRHHSLNVLGLTTGLDLGSHSQRAGQDETGT 685
Query: 968 EQQKPRPRKFQLSEIWKLQRPEFAMIIFGFILGMHAGAILSIFPLILGQALQVYFDDTAS 1027
Q+P P K L+ I L +PE +++ G + GAI +F +++ + ++ +F A
Sbjct: 686 ASQEPLP-KVSLTRIAALNKPEIPVLLLGTVAAAINGAIFPLFGILISRVIEAFFKP-AH 743
Query: 1028 TLRRDVRYLSLALVGLGFGCIIFMTGQQGFCGWAGTKLTMRVRELLFRSILKQEPGWFDF 1087
L+RD R+ ++ V LG +I Q AG KL R+R + F + E WFD
Sbjct: 744 ELKRDSRFWAIIFVALGVTSLIVSPTQMYLFAVAGGKLIRRIRSMCFEKAVHMEVAWFDE 803
Query: 1088 EENSTGVLVSRLSIDSISFRSVLGDRFSVLLMGLSSAAVGLGVSLVLNWRLTLVAAALTP 1147
+NS+G + +RLS D+ R+++GD S+ + ++SAA GL ++ +W L L+ + P
Sbjct: 804 PQNSSGTMGARLSADATLIRALVGDALSLAVQNVASAASGLIIAFTASWELALIILVMLP 863
Query: 1148 FTLGAS-YLSLIINVGPKID-NSSYAKASSIASGAVSNIRTVTTFSAQEQIINSFDKALS 1205
+G + ++ + G D S Y +AS +A+ AV +IRTV +F A+E+++ + K
Sbjct: 864 L-IGINGFVQVKFMKGFSADAKSKYEEASQVANDAVGSIRTVASFCAEEKVMQMYKKQCE 922
Query: 1206 EPKKKSVKRSQILGLTLGFSQGAMYVAYTFTLWFGAYLVKQGHASFGVVYKIFLILVLSS 1265
P K +K+ I GL GFS ++ Y + + GA LV+ G +F V+++F L +++
Sbjct: 923 GPIKDGIKQGFISGLGFGFSFFILFCVYATSFYAGARLVEDGKTTFNNVFQVFFALTMAA 982
Query: 1266 FSVGQLAGLAPDTSMAATAIPAVLQITKRKPLIDNVK--GRKLERSKPLGIELKMVTFTY 1323
+ Q + APD+S A A ++ I RK ID+ G LE K IEL+ ++FTY
Sbjct: 983 IGISQSSTFAPDSSKAKVAAASIFAIIDRKSKIDSSDETGTVLENVKG-DIELRHLSFTY 1041
Query: 1324 PSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREI 1383
P+RP++ + +D CL ++ G VALVG SGSGKSTVI L+QRFYDP+ G + ++GV+L+++
Sbjct: 1042 PARPDIQIFRDLCLTIRAGKTVALVGESGSGKSTVISLLQRFYDPDSGHITLDGVELKKL 1101
Query: 1384 NVKWLRKQTALVGQEPALFAGTIRDNIALGNPKXXXXXXXXXXXXXYI---HKFISSLPQ 1440
+KWLR+Q LVGQEP LF TIR NIA G + HKFISS+ Q
Sbjct: 1102 QLKWLRQQMGLVGQEPVLFNDTIRANIAYGKGSEEAATESEIIAAAELANAHKFISSIQQ 1161
Query: 1441 GYETQVGESGVQLSGGQKQRIAIARAILKGSRVXXXXXXXXXXXXXXXKHVQDALRKVSK 1500
GY+T VGE G+QLSGGQKQR+AIARAI+K ++ + VQDAL +V
Sbjct: 1162 GYDTVVGERGIQLSGGQKQRVAIARAIVKEPKILLLDEATSALDAESERVVQDALDRVMV 1221
Query: 1501 RATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETLLASHLNGVYASLVRAETEAN 1557
TTIVVAHRLSTI+ A++IAVV++G + E G+HETL+ GVYASLV+ A+
Sbjct: 1222 NRTTIVVAHRLSTIKNADVIAVVKNGVIAEKGTHETLIKIE-GGVYASLVQLHMTAS 1277
|
|
| TAIR|locus:2120805 ABCB2 "ATP-binding cassette B2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2283 (808.7 bits), Expect = 8.8e-237, P = 8.8e-237
Identities = 492/1242 (39%), Positives = 723/1242 (58%)
Query: 318 PYNEDDAEVAKP-VGLFSLFKYSTKLDMILVLLGCIGALINGGALPWYSYFFGNFVNKIA 376
P E + E+ +P V L LF ++ D +L+ LG +GA I+G ++P + FFG +N I
Sbjct: 47 PAPEKEKEMTQPKVSLLKLFSFADFYDCVLMTLGSVGACIHGASVPIFFIFFGKLINIIG 106
Query: 377 NESSDPDKTQMMKDAEKICLLMTVLAAIVMMGAYLEITCWRLVGERSAQRIRTKYLRAVL 436
P Q K L L+ ++ ++LE+ CW GER A ++R YLR++L
Sbjct: 107 LAYLFPK--QASHRVAKYSLDFVYLSVAILFSSWLEVACWMHTGERQAAKMRRAYLRSML 164
Query: 437 RQDIAFFDTEVSTSDIMHGISSDIAQIQEVMGEKVAHFAHNIFTFICGYTVGFLRSWKVS 496
QDI+ FDTE ST +++ I+SDI +Q+ + EKV +F H I FI G+ +GF W++S
Sbjct: 165 SQDISLFDTEASTGEVISAITSDILVVQDALSEKVGNFLHYISRFIAGFAIGFTSVWQIS 224
Query: 497 LVVLSVTPLMMFCGMAYKAVYVGLTSKEEASYRRAGSVAEQAISSIRTVFSFVAEDHFAV 556
LV LS+ PL+ G Y V +GL ++ SY +AG +AE+ I ++RTV +F E+ AV
Sbjct: 225 LVTLSIVPLIALAGGIYAFVAIGLIARVRKSYIKAGEIAEEVIGNVRTVQAFTGEER-AV 283
Query: 557 R-YAGLLADSIPXXXXXXXXXXXXXXVIYLVTYATWALAFWYGSILVARKELSGGAAIAC 615
R Y L ++ ++ V + +WAL W+ S++V + GG +
Sbjct: 284 RLYREALENTYKYGRKAGLTKGLGLGSMHCVLFLSWALLVWFTSVVVHKDIADGGKSFTT 343
Query: 616 FFGVNVGGRGLALSLSYFAQFAQGTVAATRVFEIIDRVPEIDPYNSEGRKLSSVSGKIEF 675
V + G L + + F + AA +F++I+R GRKL V G I+F
Sbjct: 344 MLNVVIAGLSLGQAAPDISAFVRAKAAAYPIFKMIERNTVTKTSAKSGRKLGKVDGHIQF 403
Query: 676 KGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLD 735
K TF+YPSRP+ VI LNL IP+ K +ALVG SG GKSTV +LIERFY+P G + LD
Sbjct: 404 KDATFSYPSRPDVVIFDRLNLAIPAGKIVALVGGSGSGKSTVISLIERFYEPISGAVLLD 463
Query: 736 GHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENXXXXXXXXXXXXXXXHSFIS 795
G+++ L +KWLR QIG+V QEP LFAT+I EN+L GK++ SFI+
Sbjct: 464 GNNISELDIKWLRGQIGLVNQEPALFATTIRENILYGKDDATAEEITRAAKLSEAISFIN 523
Query: 796 ELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAID 855
LP G++TQVG+RG QLSGGQKQRIA++RA++K+P ILLLDE TSALD+ESE VQ+A+D
Sbjct: 524 NLPEGFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEALD 583
Query: 856 KISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLER-GGAYHDLVKLASEAV 914
++ VGRTT+V+AHRL+TV+NA+ I V+ +G +VE GNH L+ GAY L++L A
Sbjct: 584 RVMVGRTTVVVAHRLSTVRNADIIAVVHEGKIVEFGNHENLISNPDGAYSSLLRLQETA- 642
Query: 915 SQPQSKQKDAKRGIEFSIYEKSVIEVSRSRYANEVSKSKYFKSMQAEIQTVEEEQQKPRP 974
S Q++ +++ +Y+ E+S+++ + E T + +
Sbjct: 643 ----SLQRNPS-------LNRTLSRPHSIKYSRELSRTRSSFCSERESVTRPDGADPSKK 691
Query: 975 RKFQLSEIWKLQRPEFAMIIFGFILGMHAGAILSIFPLILGQALQVYFDDTASTLRRDVR 1034
K + ++ + RP++ + G I AG+ + +F L + QAL Y+ T +++++
Sbjct: 692 VKVTVGRLYSMIRPDWMYGVCGTICAFIAGSQMPLFALGVSQALVSYYSGWDET-QKEIK 750
Query: 1035 YLSLALVGLGFGCIIFMTGQQGFCGWAGTKLTMRVRELLFRSILKQEPGWFDFEENSTGV 1094
+++ +I T + G G +LT+RVRE +FR+ILK E GWFD +N++ +
Sbjct: 751 KIAILFCCASVITLIVYTIEHICFGTMGERLTLRVRENMFRAILKNEIGWFDEVDNTSSM 810
Query: 1095 LVSRLSIDSISFRSVLGDRFSVLLMGLSSAAVGLGVSLVLNWRLTLVAAALTPFTLGASY 1154
L SRL D+ ++++ DR ++LL L ++ +LNWRLTLV A P +
Sbjct: 811 LASRLESDATLLKTIVVDRSTILLQNLGLVVTSFIIAFILNWRLTLVVLATYPLVISGHI 870
Query: 1155 LSLIINVGPKID-NSSYAKASSIASGAVSNIRTVTTFSAQEQIINSFDKALSEPKKKSVK 1213
+ G D N +Y KA+ +A +VSNIRTV F A+E+I+ + + L EP K S +
Sbjct: 871 SEKLFMQGYGGDLNKAYLKANMLAGESVSNIRTVAAFCAEEKILELYSRELLEPSKSSFR 930
Query: 1214 RSQILGLTLGFSQGAMYVAYTFTLWFGAYLVKQGHASFGVVYKIFLILVLSSFSVGQLAG 1273
R QI GL G SQ ++ +Y LW+G+ L+ +G A F V K F++L++++ ++G+
Sbjct: 931 RGQIAGLFYGVSQFFIFSSYGLALWYGSTLMDKGLAGFKSVMKTFMVLIVTALAMGETLA 990
Query: 1274 LAPDTSMAATAIPAVLQITKRKPLIDNVKGRKLERSKPLGIELKMVTFTYPSRPEVTVLK 1333
LAPD + +V +I RK I +L + IELK V F+YPSRP+V + +
Sbjct: 991 LAPDLLKGNQMVASVFEILDRKTQIVGETSEELNNVEGT-IELKGVHFSYPSRPDVVIFR 1049
Query: 1334 DFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTA 1393
DF L V+ G +ALVG SGSGKS+VI LI RFYDP GKVMIEG D++++++K LRK
Sbjct: 1050 DFDLIVRAGKSMALVGQSGSGKSSVISLILRFYDPTAGKVMIEGKDIKKLDLKALRKHIG 1109
Query: 1394 LVGQEPALFAGTIRDNIALGNPKXXXXXXXXXXXXXYIHKFISSLPQGYETQVGESGVQL 1453
LV QEPALFA TI +NI GN H FI+SLP+GY T+VGE GVQ+
Sbjct: 1110 LVQQEPALFATTIYENILYGNEGASQSEVVESAMLANAHSFITSLPEGYSTKVGERGVQM 1169
Query: 1454 SGGQKQRIAIARAILKGSRVXXXXXXXXXXXXXXXKHVQDALRKVSKRATTIVVAHRLST 1513
SGGQ+QRIAIARAILK + + VQ AL ++ TT+VVAHRLST
Sbjct: 1170 SGGQRQRIAIARAILKNPAILLLDEATSALDVESERVVQQALDRLMANRTTVVVAHRLST 1229
Query: 1514 IREANMIAVVRDGAVVEYGSHETLLASHLNGVYASLVRAETE 1555
I+ A+ I+V+ G +VE GSH L+ + +G Y L+ + +
Sbjct: 1230 IKNADTISVLHGGKIVEQGSHRKLVLNK-SGPYFKLISLQQQ 1270
|
|
| TAIR|locus:2141350 ABCB3 "ATP-binding cassette B3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2263 (801.7 bits), Expect = 1.2e-234, P = 1.2e-234
Identities = 478/1241 (38%), Positives = 724/1241 (58%)
Query: 325 EVAKPVGLFSLFKYSTKLDMILVLLGCIGALINGGALPWYSYFFGNFVNKIANESSDPDK 384
E K V + LF +S D++L+++G IGA+ NG P + FG+ ++ I S+ D
Sbjct: 3 EKTKTVPFYKLFSFSDSTDVLLMIVGSIGAIGNGVGFPLMTLLFGDLIDSIGQNQSNKDI 62
Query: 385 TQMMKDAEKICLLMTVLAAIVMMGAYLEITCWRLVGERSAQRIRTKYLRAVLRQDIAFFD 444
+++ K+CL L + A+L++ CW + GER A RIR+ YL+ +LRQDI FFD
Sbjct: 63 VEIVS---KVCLKFVYLGLGTLGAAFLQVACWMITGERQAARIRSLYLKTILRQDIGFFD 119
Query: 445 TEVSTSDIMHGISSDIAQIQEVMGEKVAHFAHNIFTFICGYTVGFLRSWKVSLVVLSVTP 504
E ST +++ +S D I E MGEKV F I TF+ G+ + F++ W ++LV+L P
Sbjct: 120 VETSTGEVVGRMSGDTVLILEAMGEKVGKFIQLIATFVGGFVLAFVKGWLLTLVMLVSIP 179
Query: 505 LMMFCGMAYKAVYVGLTSKEEASYRRAGSVAEQAISSIRTVFSFVAEDHFAVRYAGLLAD 564
L+ G A + +S+E+A+Y +A +V EQ + SIRTV SF E Y +
Sbjct: 180 LLAIAGAAMPIIVTRASSREQAAYAKASTVVEQTLGSIRTVASFTGEKQAMKSYREFINL 239
Query: 565 SIPXXXXXXXXXXXXXXVIYLVTYATWALAFWYGSILVARKELSGGAAIACFFGVNVGGR 624
+ V++ V + ++ALA W+G ++ +K +GG + V
Sbjct: 240 AYRASVKQGFSMGLGLGVVFFVFFCSYALAIWFGGEMILKKGYTGGEVVNVMVTVVASSM 299
Query: 625 GLALSLSYFAQFAQGTVAATRVFEIIDRVPEIDPYNSEGRKLSSVSGKIEFKGVTFAYPS 684
L + FA G AA ++FE I+R P ID ++ G+ L + G+IE + V F+YP+
Sbjct: 300 SLGQTTPCLTAFAAGKAAAYKMFETIERKPSIDAFDLNGKVLEDIRGEIELRDVCFSYPA 359
Query: 685 RPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQV 744
RP + +L+IPS T ALVG SG GKS+V +LIERFYDP+ G + +DG +LK Q+
Sbjct: 360 RPMEEVFGGFSLLIPSGATAALVGESGSGKSSVISLIERFYDPSSGSVLIDGVNLKEFQL 419
Query: 745 KWLRTQIGMVGQEPILFATSILENVLMGKENXXXXXXXXXXXXXXXHSFISELPLGYDTQ 804
KW+R +IG+V QEP+LF++SI+EN+ GKEN +FI +LP G +T
Sbjct: 420 KWIRGKIGLVSQEPVLFSSSIMENIGYGKENATVEEIQAAAKLANAANFIDKLPRGLETL 479
Query: 805 VGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTI 864
VG+ GTQLSGGQKQRIA+ARA++KDPRILLLDE TSALD+ESE +VQ+A+D++ + RTT+
Sbjct: 480 VGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDRVMMSRTTV 539
Query: 865 VIAHRLATVKNANTIVVLDQGSVVEIGNHRQLL-ERGGAYHDLVKLASEAVSQPQSKQKD 923
++AHRL+TV+NA+ I V+ +G +VE G+H +LL + GAY L++L + + + + +
Sbjct: 540 IVAHRLSTVRNADMIAVIHRGKIVEEGSHSELLKDHEGAYAQLIRL--QKIKKEPKRLES 597
Query: 924 AKRGIEFSIYEKSVIEVSRSRYANEVSKSKYFKSMQAEIQTVEEEQQKPRPRKFQLSEIW 983
+ + SI S + R+R ++ S S + E + EQ R ++ I
Sbjct: 598 SNELRDRSINRGSSRNI-RTRVHDDDSVSVLGLLGRQENTEISREQS----RNVSITRIA 652
Query: 984 KLQRPEFAMIIFGFILGMHAGAILSIFPLILGQALQVYFDDTASTLRRDVRYLSLALVGL 1043
L +PE ++I G +LG G I IF ++ + ++ +F ++RD R+ S+ V L
Sbjct: 653 ALNKPETTILILGTLLGAVNGTIFPIFGILFAKVIEAFFKPPHD-MKRDSRFWSMIFVLL 711
Query: 1044 GFGCIIFMTGQQGFCGWAGTKLTMRVRELLFRSILKQEPGWFDFEENSTGVLVSRLSIDS 1103
G +I AG +L R+R + F ++ E GWFD ENS+G + SRLS D+
Sbjct: 712 GVASLIVYPMHTYLFAVAGGRLIQRIRVMCFEKVVHMEVGWFDDPENSSGTIGSRLSADA 771
Query: 1104 ISFRSVLGDRFSVLLMGLSSAAVGLGVSLVLNWRLTLVAAALTPFTLGAS-YLSLIINVG 1162
++++GD S+ + ++A GL ++ +W+L ++ + P +G + YL + G
Sbjct: 772 ALIKTLVGDSLSLSVKNAAAAVSGLIIAFTASWKLAVIILVMIPL-IGINGYLQIKFIKG 830
Query: 1163 PKID-NSSYAKASSIASGAVSNIRTVTTFSAQEQIINSFDKALSEPKKKSVKRSQILGLT 1221
D + Y +AS +A+ AV +IRTV +F A+E+++ + K + K +K+ I G+
Sbjct: 831 FTADAKAKYEEASQVANDAVGSIRTVASFCAEEKVMEMYKKRCEDTIKSGIKQGLISGVG 890
Query: 1222 LGFSQGAMYVAYTFTLWFGAYLVKQGHASFGVVYKIFLILVLSSFSVGQLAGLAPDTSMA 1281
G S +Y Y + GA LVK G +F V+++FL L +++ + Q + APD+S A
Sbjct: 891 FGISFFVLYSVYASCFYVGARLVKAGRTNFNDVFQVFLALTMTAIGISQASSFAPDSSKA 950
Query: 1282 ATAIPAVLQITKRKPLIDN--VKGRKLERSKPLGIELKMVTFTYPSRPEVTVLKDFCLKV 1339
A ++ I K +ID+ G LE K IEL ++FTY +RP+V + +D C +
Sbjct: 951 KGAAASIFGIIDGKSMIDSRDESGLVLENVKG-DIELCHISFTYQTRPDVQIFRDLCFAI 1009
Query: 1340 KGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQEP 1399
+ G VALVG SGSGKSTVI L+QRFYDP+ G + ++ V+L+++ +KW+R+Q LVGQEP
Sbjct: 1010 RAGQTVALVGESGSGKSTVISLLQRFYDPDSGHITLDRVELKKLQLKWVRQQMGLVGQEP 1069
Query: 1400 ALFAGTIRDNIALGN--PKXXXXXXXXXXXXXYIHKFISSLPQGYETQVGESGVQLSGGQ 1457
LF TIR NIA G + H FISS+ QGY+T VGE G+QLSGGQ
Sbjct: 1070 VLFNDTIRSNIAYGKGGDEASEAEIIAAAELANAHGFISSIQQGYDTVVGERGIQLSGGQ 1129
Query: 1458 KQRIAIARAILKGSRVXXXXXXXXXXXXXXXKHVQDALRKVSKRATTIVVAHRLSTIREA 1517
KQR+AIARAI+K ++ + VQDAL +V TT+VVAHRLSTI+ A
Sbjct: 1130 KQRVAIARAIVKEPKILLLDEATSALDAESERVVQDALDRVMVNRTTVVVAHRLSTIKNA 1189
Query: 1518 NMIAVVRDGAVVEYGSHETLLASHLNGVYASLVRAETEANA 1558
++IAVV++G +VE G+HETL+ GVYASLV+ A++
Sbjct: 1190 DVIAVVKNGVIVEKGTHETLINIE-GGVYASLVQLHISASS 1229
|
|
| TAIR|locus:2141365 ABCB5 "ATP-binding cassette B5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2261 (801.0 bits), Expect = 1.9e-234, P = 1.9e-234
Identities = 485/1239 (39%), Positives = 726/1239 (58%)
Query: 328 KPVGLFSLFKYSTKLDMILVLLGCIGALINGGALPWYSYFFGNFVNKIA-NESSDPDKTQ 386
K V + LF +S D++L+++G IGA+ NG P + FG ++ + N++++ +
Sbjct: 11 KTVPFYKLFFFSDSTDVLLMIVGSIGAIANGVCSPLMTLLFGELIDAMGPNQNNE----E 66
Query: 387 MMKDAEKICLLMTVLAAIVMMGAYLEITCWRLVGERSAQRIRTKYLRAVLRQDIAFFDTE 446
+++ K+CL + L + A+L++ CW + GER A RIR+ YL+ +LRQDI FFD E
Sbjct: 67 IVERVSKVCLSLVYLGLGALGAAFLQVACWMITGERQAARIRSLYLKTILRQDIGFFDVE 126
Query: 447 VSTSDIMHGISSDIAQIQEVMGEKVAHFAHNIFTFICGYTVGFLRSWKVSLVVLSVTPLM 506
++T +++ +S D I + MGEKV F I TF+ G+ + FLR W ++LV+L+ PL+
Sbjct: 127 MTTGEVVGRMSGDTVLILDAMGEKVGKFIQLISTFVGGFVIAFLRGWLLTLVMLTSIPLL 186
Query: 507 MFCGMAYKAVYVGLTSKEEASYRRAGSVAEQAISSIRTVFSFVAEDHFAVRYAGLLADSI 566
G A + +S+E+A+Y +A +V EQ + SIRTV SF E Y L+ +
Sbjct: 187 AMSGAAIAIIVTRASSQEQAAYAKASNVVEQTLGSIRTVASFTGEKQAMSSYKELINLAY 246
Query: 567 PXXXXXXXXXXXXXXVIYLVTYATWALAFWYGSILVARKELSGGAAIACFFGVNVGGRGL 626
V++LV ++T+AL W+G ++ RK +GGA I V L
Sbjct: 247 KSNVKQGFVTGLGLGVMFLVFFSTYALGTWFGGEMILRKGYTGGAVINVMVTVVSSSIAL 306
Query: 627 ALSLSYFAQFAQGTVAATRVFEIIDRVPEIDPYNSEGRKLSSVSGKIEFKGVTFAYPSRP 686
+ F G AA ++FE I+R P ID ++ G+ L + G+IE + V F+YP+RP
Sbjct: 307 GQASPCLTAFTAGKAAAYKMFETIEREPLIDTFDLNGKVLEDIRGEIELRDVCFSYPARP 366
Query: 687 ETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKW 746
+ + +L+IPS T ALVG SG GKSTV +LIERFYDP G + +DG DLK Q+KW
Sbjct: 367 KEEVFGGFSLLIPSGTTTALVGESGSGKSTVISLIERFYDPNSGQVLIDGVDLKEFQLKW 426
Query: 747 LRTQIGMVGQEPILFATSILENVLMGKENXXXXXXXXXXXXXXXHSFISELPLGYDTQVG 806
+R +IG+V QEP+LF++SI+EN+ GKE FI +LPLG +T VG
Sbjct: 427 IRGKIGLVSQEPVLFSSSIMENIGYGKEGATVEEIQAASKLANAAKFIDKLPLGLETLVG 486
Query: 807 DRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVI 866
+ GTQLSGGQKQRIA+ARA++KDPRILLLDE TSALD+ESE +VQ+A+D+I V RTT+++
Sbjct: 487 EHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDRIMVNRTTVIV 546
Query: 867 AHRLATVKNANTIVVLDQGSVVEIGNHRQLL-ERGGAYHDLVKLASEAVSQPQSKQKDAK 925
AHRL+TV+NA+ I V+ +G +VE G+H +LL + GAY L++L Q K++K
Sbjct: 547 AHRLSTVRNADIIAVIHRGKIVEEGSHSELLKDHEGAYSQLLRL--------QEINKESK 598
Query: 926 RGIEFSIYEKSVIEVSRSRYANEVSKSKYFKSMQAEIQTVEEEQQKPR-PRKFQLSEIWK 984
R +E S + S+ S SR N + S+ + + + +K + I
Sbjct: 599 R-LEIS--DGSISSGS-SRGNNSTRQDDDSFSVLGLLAGQDSTKMSQELSQKVSFTRIAA 654
Query: 985 LQRPEFAMIIFGFILGMHAGAILSIFPLILGQALQVYFDDTASTLRRDVRYLSLALVGLG 1044
L +PE ++I G ++G G I IF ++ + ++ +F L+RD R+ S+ V LG
Sbjct: 655 LNKPEIPILILGTLVGAVNGTIFPIFGILFAKVIEAFFK-APHELKRDSRFWSMIFVLLG 713
Query: 1045 FGCIIFMTGQQGFCGWAGTKLTMRVRELLFRSILKQEPGWFDFEENSTGVLVSRLSIDSI 1104
+I AG +L R+R + F ++ E GWFD NS+G + +RLS D+
Sbjct: 714 VAAVIVYPTTNYLFAIAGGRLIRRIRSMCFEKVVHMEVGWFDEPGNSSGAMGARLSADAA 773
Query: 1105 SFRSVLGDRFSVLLMGLSSAAVGLGVSLVLNWRLTLVAAALTPFTLGAS-YLSLIINVGP 1163
R+++GD + + ++S GL ++ +W + ++ + PF +G + Y+ + G
Sbjct: 774 LIRTLVGDSLCLSVKNVASLVTGLIIAFTASWEVAIIILVIIPF-IGINGYIQIKFMKGF 832
Query: 1164 KID-NSSYAKASSIASGAVSNIRTVTTFSAQEQIINSFDKALSEPKKKSVKRSQILGLTL 1222
D + Y +AS +A+ AV +IRTV +F A+E+++ + K + K +K+ I G+
Sbjct: 833 SADAKAKYEEASQVANDAVGSIRTVASFCAEEKVMEMYKKRCEDTIKSGIKQGLISGVGF 892
Query: 1223 GFSQGAMYVAYTFTLWFGAYLVKQGHASFGVVYKIFLILVLSSFSVGQLAGLAPDTSMAA 1282
G S +Y Y + GA LVK G +F V+++FL L L++ + Q + APD+S
Sbjct: 893 GISFFVLYSVYASCFYVGARLVKAGRTNFNDVFQVFLALTLTAVGISQASSFAPDSSKGK 952
Query: 1283 TAIPAVLQITKRKPLIDN--VKGRKLERSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVK 1340
A ++ +I R ID+ G LE K IEL ++FTY +RP+V V +D CL ++
Sbjct: 953 GAAVSIFRIIDRISKIDSRDESGMVLENVKG-DIELCHISFTYQTRPDVQVFRDLCLSIR 1011
Query: 1341 GGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQEPA 1400
G VALVG SGSGKSTVI L+QRFYDP+ G + ++GV+L+++ +KWLR+Q LVGQEP
Sbjct: 1012 AGQTVALVGESGSGKSTVISLLQRFYDPDSGHITLDGVELKKLRLKWLRQQMGLVGQEPV 1071
Query: 1401 LFAGTIRDNIALGN--PKXXXXXXXXXXXXXYIHKFISSLPQGYETQVGESGVQLSGGQK 1458
LF TIR NIA G + H+FISS+ +GY+T VGE G+QLSGGQK
Sbjct: 1072 LFNDTIRANIAYGKGGEEATEAEIIAASELANAHRFISSIQKGYDTVVGERGIQLSGGQK 1131
Query: 1459 QRIAIARAILKGSRVXXXXXXXXXXXXXXXKHVQDALRKVSKRATTIVVAHRLSTIREAN 1518
QR+AIARAI+K ++ + VQDAL +V TTIVVAHRLSTI+ A+
Sbjct: 1132 QRVAIARAIVKEPKILLLDEATSALDAESERVVQDALDRVMVNRTTIVVAHRLSTIKNAD 1191
Query: 1519 MIAVVRDGAVVEYGSHETLLASHLNGVYASLVRAETEAN 1557
+IAVV++G + E G+HETL+ GVYASLV+ A+
Sbjct: 1192 VIAVVKNGVIAEKGTHETLINIE-GGVYASLVQLHINAS 1229
|
|
| TAIR|locus:2019958 PGP10 "P-glycoprotein 10" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1248 (444.4 bits), Expect = 1.9e-234, Sum P(2) = 1.9e-234
Identities = 253/607 (41%), Positives = 372/607 (61%)
Query: 310 NNDPELVSPYNEDDAEVAKPVGLFSLFKYSTKLDMILVLLGCIGALINGGALPWYSYFFG 369
+NDP +V + + V LF ++ D +L+ LG IGA I+G ++P + FFG
Sbjct: 4 SNDPAIVDMAAAEKEKKRPSVSFLKLFSFADFYDCVLMALGSIGACIHGASVPVFFIFFG 63
Query: 370 NFVNKIANESSDPDKTQMMKDAEKICLLMTVLAAIVMMGAYLEITCWRLVGERSAQRIRT 429
+N I P + K A K L L+ +++ ++LE+ CW GER A +IR
Sbjct: 64 KLINIIGLAYLFPQEASH-KVA-KYSLDFVYLSVVILFSSWLEVACWMHTGERQAAKIRK 121
Query: 430 KYLRAVLRQDIAFFDTEVSTSDIMHGISSDIAQIQEVMGEKVAHFAHNIFTFICGYTVGF 489
YLR++L QDI+ FDTE+ST +++ I+S+I +Q+ + EKV +F H I FI G+ +GF
Sbjct: 122 AYLRSMLSQDISLFDTEISTGEVISAITSEILVVQDAISEKVGNFMHFISRFIAGFAIGF 181
Query: 490 LRSWKVSLVVLSVTPLMMFCGMAYKAVYVGLTSKEEASYRRAGSVAEQAISSIRTVFSFV 549
W++SLV LS+ P + G Y V GL + SY +A +AE+ I ++RTV +F
Sbjct: 182 ASVWQISLVTLSIVPFIALAGGIYAFVSSGLIVRVRKSYVKANEIAEEVIGNVRTVQAFT 241
Query: 550 AEDHFAVRYAGLLADSIPXXXXXXXXXXXXXXVIYLVTYATWALAFWYGSILVARKELSG 609
E+ Y G L ++ ++ V + +WAL W+ SI+V + +G
Sbjct: 242 GEEKAVSSYQGALRNTYNYGRKAGLAKGLGLGSLHFVLFLSWALLIWFTSIVVHKGIANG 301
Query: 610 GAAIACFFGVNVGGRGLALSLSYFAQFAQGTVAATRVFEIIDRVPEIDPYNSEGRKLSSV 669
G + V + G L + + F + + AA +F++I+R E + GRKL +V
Sbjct: 302 GESFTTMLNVVIAGLSLGQAAPDISTFMRASAAAYPIFQMIERNTE----DKTGRKLGNV 357
Query: 670 SGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTK 729
+G I FK VTF YPSRP+ VI LN VIP+ K +ALVG SG GKST+ +LIERFY+PT
Sbjct: 358 NGDILFKDVTFTYPSRPDVVIFDKLNFVIPAGKVVALVGGSGSGKSTMISLIERFYEPTD 417
Query: 730 GLITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENXXXXXXXXXXXXXX 789
G + LDG+D++ L +KWLR IG+V QEP+LFAT+I EN++ GK++
Sbjct: 418 GAVMLDGNDIRYLDLKWLRGHIGLVNQEPVLFATTIRENIMYGKDDATSEEITNAAKLSE 477
Query: 790 XHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESI 849
SFI+ LP G++TQVG+RG QLSGGQKQRI+++RA++K+P ILLLDE TSALD+ESE I
Sbjct: 478 AISFINNLPEGFETQVGERGIQLSGGQKQRISISRAIVKNPSILLLDEATSALDAESEKI 537
Query: 850 VQQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLER-GGAYHDLVK 908
VQ+A+D++ VGRTT+V+AHRL+TV+NA+ I V+ G ++E G+H +L+ GAY L++
Sbjct: 538 VQEALDRVMVGRTTVVVAHRLSTVRNADIIAVVGGGKIIESGSHDELISNPDGAYSSLLR 597
Query: 909 LASEAVS 915
+ EA S
Sbjct: 598 I-QEAAS 603
|
|
| DICTYBASE|DDB_G0293438 abcB2 "ABC transporter B family protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 1643 (583.4 bits), Expect = 1.1e-233, Sum P(2) = 1.1e-233
Identities = 365/1034 (35%), Positives = 579/1034 (55%)
Query: 237 DDDVFSHFHNHHGSSDGKHNNNVHELSQNGHDHGGHHRMSYKMDNLDDEFLHGHRGHDAW 296
DD+ ++ +N++ +SD + N+ + D G + KMD +DD + G +
Sbjct: 36 DDNENNNNNNNNKNSDD-NEENLKDYKNKKEDFG-----NIKMDTIDDR--PTNNGILSP 87
Query: 297 LSTSHHYGGGDG----RNNDPELVSPYNEDDAEVAKPVGLFSLFKYSTKLDMILVLLGCI 352
+ + GGD + + + + EV V FSLF+++ D++L+++G I
Sbjct: 88 IDITSD--GGDSVKTLSTTQSKKLDEGEKKEGEVGPQVPFFSLFRFAKPFDILLMIIGTI 145
Query: 353 GALINGGALPWYSYFFGNFVNKIANES-SDPDKTQMMKDAEKICLLMTVLAAIVMMGAYL 411
GAL NG ++P S FG +N + E+ +DP+ +++ + + V + +Y+
Sbjct: 146 GALANGVSMPAISIVFGRLMNSFSPENLADPN-FDLVETVTSNAMYFIYIGCGVFVCSYV 204
Query: 412 EITCWRLVGERSAQRIRTKYLRAVLRQDIAFFDTEVSTSDIMHGISSDIAQIQEVMGEKV 471
E+ W L GER A R R YL+A+L+Q+I ++D S S++ ISSD QE +GEK+
Sbjct: 205 EVAFWMLAGERQAVRCRKAYLKAILKQEIGWYDVTKS-SELSTRISSDTLLFQEAIGEKI 263
Query: 472 AHFAHNIFTFICGYTVGFLRSWKVSLVVLSVTPLMMFCGMAYKAVYVGLTSKEEASYRRA 531
+F H+ TFICG+ VGF+ W+++LV+ ++TPL+ G + LT K + +Y +A
Sbjct: 264 GNFLHHTSTFICGFIVGFVNGWQLTLVIFALTPLIAAAGAFMTKMMADLTKKGQDAYAKA 323
Query: 532 GSVAEQAISSIRTVFSFVAEDHFAVRYAGLLADSIPXXXXXXXXXXXXXXVIYLVTYATW 591
G VAE+ I SIRTV +F E RY L +++ +++LV + T+
Sbjct: 324 GGVAEEKIGSIRTVSTFSGEPFEVKRYTERLKEALDIGTKKGIMNGIGIGLVFLVLFGTY 383
Query: 592 ALAFWYGS-ILVARK-------ELSGGAAIACFFGVNVGGRGLALSLSYFAQFAQGTVAA 643
+L+FWYG ++V RK GG + FF V +G L + A FA G AA
Sbjct: 384 SLSFWYGGKLIVDRKWNPVPDRPWQGGDVLTVFFSVIMGAMALGQASPNVASFANGRGAA 443
Query: 644 TRVFEIIDRVPEIDPYNSEGRKLS-SVSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSK 702
+++E++DR +IDP+++EGR + +V G IE++ + F+YPSRP+ I + NL I
Sbjct: 444 FKIYEVVDRNSKIDPFSTEGRSIEETVQGNIEYRNIGFSYPSRPDVKIFNNFNLTIKKGT 503
Query: 703 TLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIGMVGQEPILFA 762
T+ALVG SGGGKS+V L+ERFYDP +G + LDG ++K + + LR IG+V QEP+LFA
Sbjct: 504 TVALVGDSGGGKSSVIGLLERFYDPDEGEVYLDGTNIKEINIHSLRRNIGLVSQEPVLFA 563
Query: 763 TSILENVLMGKENXXXXXXXXXXXXXXXHSFISELPLGYDTQVGDRGTQLSGGQKQRIAL 822
SI EN+ G EN H FIS LP GYDTQVG++G Q+SGGQKQRIA+
Sbjct: 564 NSIAENIRYGNENATMDQIIEACKTANAHDFISALPEGYDTQVGEKGVQMSGGQKQRIAI 623
Query: 823 ARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKNANTIVVL 882
ARAMIKDP+ILLLDE TSALDS++E +VQQ+I+K+ +GRTTIVIAHRL+T+++A+ I V+
Sbjct: 624 ARAMIKDPKILLLDEATSALDSQNELLVQQSIEKLMIGRTTIVIAHRLSTIQDADQIAVV 683
Query: 883 DQGSVVEIGNHRQLLERGGAYHDLV----KLASEAVSQPQSKQKDAKRGIEFSIYEKSVI 938
G++VEIG H +L G Y LV K + + + K K++ + + S I
Sbjct: 684 KGGAIVEIGTHPELYALNGVYTQLVNRQQKGGDDGDKKKKKKSKESSKDESNNNIGPSSI 743
Query: 939 EVSRSRY---ANEVSKSKYFKSMQAEIQTVEEEQQKPRPRKFQLSEIWKLQRPEFAMIIF 995
+ +S A+ + S + + +++++KP+ + + I KL R ++ +
Sbjct: 744 SIDKSIQSIGADSLETSTIGLVNDNDNKKKKKKEKKPQEKSVPIGRILKLSRGDWPHFLI 803
Query: 996 GFILGMHAGAILSIFPLILGQALQVYFDDTASTLRRDVRYLSLALVGLGFGCIIFMTGQQ 1055
G + GAI+ +F +I + L ++ + L R R ++L + L + Q
Sbjct: 804 GLVGATLNGAIMPVFSIIFSEILGIFQEQDTDELTRRSRNMALWFILLAVVAAL-ANFIQ 862
Query: 1056 GFC-GWAGTKLTMRVRELLFRSILKQEPGWFDFEENSTGVLVSRLSIDSISFRSVLGDRF 1114
+C + G KLT +R L F SI++Q+ GWFD ENSTG L + L+ ++ + + R
Sbjct: 863 IYCFTFIGEKLTFNLRRLSFESIMRQDIGWFDLTENSTGRLTANLATEATLVQGMTSQRL 922
Query: 1115 SVLLMGLSSAAVGLGVSLVLNWRLTLVAAALTPFTLGASYLSLIINVG-PKIDNSSYAKA 1173
+L+ + + GL ++ V W+LTLV A P A + + G + +YA+
Sbjct: 923 GLLIQNIVTIVAGLVIAFVSGWKLTLVVLACVPVIGFAGKVEMDFFQGFSQKGKEAYAEC 982
Query: 1174 SSIASGAVSNIRTVTTFSAQEQIINSFDKALSEPKKKSVKRSQILGLTLGFSQGAMYVAY 1233
+AS A+ IRTV++F+ + +I+ F + L +P + S ++S + GL+ GFSQ ++ Y
Sbjct: 983 GQVASEAIGGIRTVSSFTCENKILEKFRQCLQKPIQMSFRKSNVSGLSFGFSQCTLFFIY 1042
Query: 1234 TFTLWFGAYLVKQG 1247
T T W+G LV G
Sbjct: 1043 TLTYWYGGKLVDSG 1056
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.4.21 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1560 | |||
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 1e-141 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 1e-136 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 1e-135 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 1e-129 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 1e-123 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 1e-121 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 1e-119 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 1e-110 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 1e-109 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 1e-106 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 1e-106 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 1e-105 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 1e-100 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 4e-98 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 8e-97 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 1e-96 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 3e-95 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 6e-92 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 8e-87 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 2e-86 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 4e-86 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 6e-84 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 1e-83 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 4e-83 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 1e-81 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 2e-79 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 5e-79 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 3e-78 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 4e-77 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 2e-75 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 5e-75 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 1e-73 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 1e-72 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 2e-72 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 1e-70 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 8e-70 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 3e-69 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 6e-69 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 7e-69 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 1e-68 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 6e-67 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 1e-66 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 3e-66 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 2e-64 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 4e-64 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 5e-64 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 2e-63 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 7e-63 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 2e-62 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 4e-62 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 1e-61 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 2e-61 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 1e-60 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 5e-60 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 2e-58 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 1e-57 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 2e-57 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 3e-57 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 2e-56 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 3e-56 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 3e-55 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 2e-53 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 6e-53 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 2e-50 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 9e-50 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 1e-49 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 1e-48 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 9e-48 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 4e-47 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 7e-46 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 7e-45 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 7e-45 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 2e-44 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 8e-43 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 2e-41 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 2e-41 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 2e-41 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 3e-41 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 4e-41 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 8e-41 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 2e-39 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 3e-39 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 3e-39 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 4e-39 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 6e-39 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 3e-38 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 3e-38 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 4e-38 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 1e-37 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 1e-37 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 2e-37 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 2e-37 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 6e-37 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 8e-37 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 1e-36 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 1e-36 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 2e-36 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 3e-36 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 3e-36 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 3e-36 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 4e-36 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 5e-36 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 6e-36 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 6e-36 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 7e-36 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 2e-35 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 2e-35 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 2e-35 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 2e-35 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 3e-35 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 4e-35 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 5e-35 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 6e-35 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 8e-35 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 2e-34 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 2e-34 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 2e-34 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 3e-34 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 3e-34 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 4e-34 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 4e-34 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 4e-34 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 1e-33 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 2e-33 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 3e-33 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 4e-33 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 5e-33 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 7e-33 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 9e-33 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 9e-33 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 1e-32 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 1e-32 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 1e-32 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 1e-32 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 3e-32 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 4e-32 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 5e-32 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 6e-32 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 6e-32 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 6e-32 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 9e-32 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 2e-31 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 2e-31 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 3e-31 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 6e-31 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 7e-31 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 9e-31 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 1e-30 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 2e-30 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 4e-30 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 5e-30 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 6e-30 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 8e-30 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 1e-29 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 2e-29 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 2e-29 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 3e-29 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 4e-29 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 5e-29 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 5e-29 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 7e-29 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 8e-29 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 1e-28 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 1e-28 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 1e-28 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 1e-28 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 2e-28 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 2e-28 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 2e-28 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 2e-28 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 2e-28 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 3e-28 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 4e-28 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 4e-28 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 4e-28 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 5e-28 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 6e-28 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 7e-28 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 7e-28 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 8e-28 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 8e-28 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 8e-28 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 9e-28 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 1e-27 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 1e-27 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 2e-27 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 2e-27 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 3e-27 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 3e-27 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 4e-27 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 4e-27 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 4e-27 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 4e-27 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 5e-27 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 6e-27 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 6e-27 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 7e-27 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 8e-27 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 9e-27 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 1e-26 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 1e-26 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 1e-26 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 2e-26 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 2e-26 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 2e-26 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 2e-26 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 2e-26 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 2e-26 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 2e-26 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 2e-26 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 5e-26 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 5e-26 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 6e-26 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 6e-26 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 8e-26 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 9e-26 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 1e-25 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 1e-25 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 1e-25 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 1e-25 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 1e-25 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 1e-25 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 1e-25 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 2e-25 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 2e-25 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 2e-25 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 2e-25 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 2e-25 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 2e-25 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 2e-25 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 3e-25 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 3e-25 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 4e-25 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 5e-25 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 5e-25 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 5e-25 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 6e-25 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 7e-25 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 9e-25 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 1e-24 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 1e-24 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 1e-24 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 1e-24 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 1e-24 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-24 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 2e-24 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 2e-24 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 2e-24 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 2e-24 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 2e-24 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 3e-24 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 3e-24 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 3e-24 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 3e-24 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 4e-24 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 4e-24 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 5e-24 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 5e-24 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 5e-24 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 6e-24 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 6e-24 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 7e-24 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 7e-24 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 7e-24 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 7e-24 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 8e-24 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 8e-24 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 8e-24 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 8e-24 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 9e-24 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 9e-24 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 9e-24 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 1e-23 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 1e-23 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 1e-23 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 2e-23 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 2e-23 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 2e-23 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 2e-23 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 2e-23 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 3e-23 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 3e-23 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 3e-23 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 4e-23 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 5e-23 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 5e-23 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 5e-23 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 5e-23 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 5e-23 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 6e-23 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 6e-23 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 6e-23 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 7e-23 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 8e-23 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 8e-23 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 8e-23 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 8e-23 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 9e-23 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 9e-23 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 1e-22 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 1e-22 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 1e-22 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 2e-22 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 2e-22 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 2e-22 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 3e-22 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 3e-22 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 3e-22 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 3e-22 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 3e-22 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 3e-22 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 3e-22 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 5e-22 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 5e-22 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 6e-22 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 6e-22 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 7e-22 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 8e-22 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 8e-22 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 8e-22 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 9e-22 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 1e-21 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 1e-21 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 1e-21 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 1e-21 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 2e-21 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 2e-21 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 2e-21 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 2e-21 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 3e-21 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 3e-21 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 3e-21 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 3e-21 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 4e-21 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 4e-21 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 4e-21 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 4e-21 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 5e-21 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 5e-21 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 6e-21 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 6e-21 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 6e-21 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 1e-20 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 1e-20 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 1e-20 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 1e-20 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 1e-20 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 1e-20 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 2e-20 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 2e-20 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 2e-20 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 2e-20 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 2e-20 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 2e-20 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 3e-20 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 3e-20 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 3e-20 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 3e-20 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 3e-20 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 4e-20 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 4e-20 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 5e-20 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 5e-20 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 6e-20 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 7e-20 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 7e-20 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 8e-20 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 8e-20 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 1e-19 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 1e-19 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 1e-19 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 1e-19 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 1e-19 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 1e-19 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 1e-19 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 2e-19 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 2e-19 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 2e-19 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 2e-19 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 2e-19 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 2e-19 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 3e-19 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 3e-19 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 3e-19 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 3e-19 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 4e-19 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 4e-19 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 4e-19 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 4e-19 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 4e-19 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 5e-19 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 5e-19 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 5e-19 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 5e-19 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 6e-19 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 6e-19 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 7e-19 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 7e-19 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 7e-19 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 8e-19 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 8e-19 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 8e-19 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 9e-19 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 9e-19 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 9e-19 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 1e-18 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 1e-18 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 1e-18 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 1e-18 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 1e-18 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 1e-18 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 1e-18 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 2e-18 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 2e-18 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 2e-18 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 2e-18 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 2e-18 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 2e-18 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 2e-18 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 2e-18 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 2e-18 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 3e-18 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 3e-18 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 3e-18 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 3e-18 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 4e-18 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 4e-18 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 5e-18 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 5e-18 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 6e-18 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 6e-18 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 6e-18 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 6e-18 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 7e-18 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 8e-18 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 8e-18 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 8e-18 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 9e-18 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 1e-17 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 1e-17 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 1e-17 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 1e-17 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 1e-17 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 2e-17 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 2e-17 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 2e-17 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 2e-17 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 2e-17 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 2e-17 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 2e-17 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 2e-17 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 2e-17 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 2e-17 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 3e-17 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 3e-17 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 3e-17 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 4e-17 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 4e-17 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 4e-17 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 5e-17 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 5e-17 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 5e-17 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 5e-17 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 6e-17 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 7e-17 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 9e-17 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 1e-16 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 1e-16 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 1e-16 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 2e-16 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 2e-16 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 2e-16 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 3e-16 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 3e-16 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 3e-16 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 7e-16 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 7e-16 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 8e-16 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 8e-16 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 8e-16 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 9e-16 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 1e-15 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 1e-15 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 1e-15 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 1e-15 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 1e-15 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 2e-15 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 2e-15 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 2e-15 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 2e-15 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 2e-15 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 2e-15 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 2e-15 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 3e-15 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 3e-15 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 3e-15 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 4e-15 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 4e-15 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 4e-15 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 4e-15 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 5e-15 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 5e-15 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 5e-15 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 5e-15 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 6e-15 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 7e-15 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 8e-15 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 9e-15 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 9e-15 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 1e-14 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 1e-14 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 1e-14 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 1e-14 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-14 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 2e-14 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 2e-14 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 2e-14 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 3e-14 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 4e-14 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 4e-14 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 4e-14 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 5e-14 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 5e-14 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 5e-14 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 6e-14 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 6e-14 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 7e-14 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 1e-13 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 1e-13 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 1e-13 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 2e-13 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 2e-13 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 2e-13 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 2e-13 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 3e-13 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 3e-13 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 3e-13 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 3e-13 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 4e-13 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 5e-13 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 6e-13 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 7e-13 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 7e-13 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 1e-12 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 1e-12 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 1e-12 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 1e-12 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 1e-12 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 2e-12 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 2e-12 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 2e-12 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 2e-12 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 2e-12 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 3e-12 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 3e-12 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 3e-12 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 3e-12 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 3e-12 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 3e-12 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 4e-12 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 4e-12 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 4e-12 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 4e-12 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 4e-12 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 7e-12 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 7e-12 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 9e-12 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 1e-11 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 1e-11 | |
| PRK11022 | 326 | PRK11022, dppD, dipeptide transporter ATP-binding | 1e-11 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 2e-11 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 2e-11 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 2e-11 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 2e-11 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 3e-11 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 3e-11 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 3e-11 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 4e-11 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 5e-11 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 5e-11 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 6e-11 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 6e-11 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 6e-11 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 7e-11 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 8e-11 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 8e-11 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 1e-10 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 1e-10 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 1e-10 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 1e-10 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 2e-10 | |
| PRK11022 | 326 | PRK11022, dppD, dipeptide transporter ATP-binding | 2e-10 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 2e-10 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 2e-10 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 2e-10 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 2e-10 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 2e-10 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 3e-10 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 4e-10 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 4e-10 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 5e-10 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 6e-10 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 8e-10 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 8e-10 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 8e-10 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 8e-10 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 1e-09 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 1e-09 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 1e-09 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 1e-09 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 1e-09 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 1e-09 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 1e-09 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 1e-09 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 2e-09 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 2e-09 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 2e-09 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 2e-09 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 2e-09 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 2e-09 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 3e-09 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 3e-09 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 3e-09 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 5e-09 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 6e-09 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 8e-09 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 1e-08 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 1e-08 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 1e-08 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 2e-08 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 2e-08 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 2e-08 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 2e-08 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 2e-08 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 2e-08 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 2e-08 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 2e-08 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 2e-08 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 4e-08 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 4e-08 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 5e-08 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 5e-08 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 5e-08 | |
| cd03271 | 261 | cd03271, ABC_UvrA_II, ATP-binding cassette domain | 8e-08 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 9e-08 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 9e-08 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 1e-07 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 2e-07 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 2e-07 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 2e-07 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 2e-07 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 3e-07 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 3e-07 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 3e-07 | |
| TIGR00630 | 925 | TIGR00630, uvra, excinuclease ABC, A subunit | 3e-07 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 4e-07 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 4e-07 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 4e-07 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 4e-07 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 5e-07 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 6e-07 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 6e-07 | |
| cd03271 | 261 | cd03271, ABC_UvrA_II, ATP-binding cassette domain | 8e-07 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 1e-06 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 1e-06 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 1e-06 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 2e-06 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 2e-06 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 2e-06 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 2e-06 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 2e-06 | |
| PRK13541 | 195 | PRK13541, PRK13541, cytochrome c biogenesis protei | 2e-06 | |
| COG0178 | 935 | COG0178, UvrA, Excinuclease ATPase subunit [DNA re | 3e-06 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 5e-06 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 5e-06 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 6e-06 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 7e-06 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 9e-06 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 9e-06 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 1e-05 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 1e-05 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 1e-05 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 1e-05 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 2e-05 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 2e-05 | |
| PRK13545 | 549 | PRK13545, tagH, teichoic acids export protein ATP- | 2e-05 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 3e-05 | |
| TIGR00630 | 925 | TIGR00630, uvra, excinuclease ABC, A subunit | 3e-05 | |
| PRK13545 | 549 | PRK13545, tagH, teichoic acids export protein ATP- | 3e-05 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 3e-05 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 4e-05 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 4e-05 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 4e-05 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 4e-05 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 5e-05 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 5e-05 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 5e-05 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 8e-05 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 8e-05 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 8e-05 | |
| COG4170 | 330 | COG4170, SapD, ABC-type antimicrobial peptide tran | 9e-05 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 9e-05 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 1e-04 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 1e-04 | |
| PRK00349 | 943 | PRK00349, uvrA, excinuclease ABC subunit A; Review | 1e-04 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 2e-04 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 2e-04 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 2e-04 | |
| TIGR00630 | 925 | TIGR00630, uvra, excinuclease ABC, A subunit | 3e-04 | |
| COG0178 | 935 | COG0178, UvrA, Excinuclease ATPase subunit [DNA re | 3e-04 | |
| PRK15093 | 330 | PRK15093, PRK15093, antimicrobial peptide ABC tran | 3e-04 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 4e-04 | |
| PRK13541 | 195 | PRK13541, PRK13541, cytochrome c biogenesis protei | 4e-04 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 6e-04 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 7e-04 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 8e-04 | |
| PRK13546 | 264 | PRK13546, PRK13546, teichoic acids export protein | 8e-04 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 0.001 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 0.001 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 0.001 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 0.001 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 0.001 | |
| cd03278 | 197 | cd03278, ABC_SMC_barmotin, ATP-binding cassette do | 0.001 | |
| cd03240 | 204 | cd03240, ABC_Rad50, ATP-binding cassette domain of | 0.001 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 0.002 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 0.002 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 0.002 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 0.002 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 0.002 | |
| PRK13546 | 264 | PRK13546, PRK13546, teichoic acids export protein | 0.002 | |
| PRK00635 | 1809 | PRK00635, PRK00635, excinuclease ABC subunit A; Pr | 0.002 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 0.003 | |
| COG0178 | 935 | COG0178, UvrA, Excinuclease ATPase subunit [DNA re | 0.003 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 0.003 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 0.003 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 0.004 | |
| PRK00635 | 1809 | PRK00635, PRK00635, excinuclease ABC subunit A; Pr | 0.004 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 472 bits (1215), Expect = e-141
Identities = 386/1446 (26%), Positives = 651/1446 (45%), Gaps = 283/1446 (19%)
Query: 346 LVLLGCIGALINGGALPWYSYFFGNFVNKIANESSDPDKTQMMKDAEKICLLMTVLAAIV 405
L+ + + A I+GG LP++ FG + + + ++ I + ++
Sbjct: 61 LLGVSFVCATISGGTLPFFVSVFGVIMKNM----------NLGENVNDIIFSLVLIGIFQ 110
Query: 406 MMGAYLEITCWRLVGERSAQRIRTKYLRAVLRQDIAFFDTEVSTSDIMHGISSDIAQIQE 465
+ +++ C +V + + ++ ++L++V QD F D S + + + Q+
Sbjct: 111 FILSFISSFCMDVVTTKILKTLKLEFLKSVFYQDGQFHDNN-PGSKLTSDLDFYLEQVNA 169
Query: 466 VMGEKVAHFAHNIFT----FICGYTVGFLRSWKVSLVVLSVTPLMMFCGMAYKAVYVGLT 521
+G K IFT F+ Y ++ +++L + V PL+ CG+ V +
Sbjct: 170 GIGTKFI----TIFTYASAFLGLYIWSLFKNARLTLCITCVFPLIYICGVICNK-KVKIN 224
Query: 522 SKEEASYRR-AGSVAEQAISSIRTVFSFVAEDHFAVRYAGLLADSI--PFGAKLGFAKGA 578
K Y S+ E+A+ IRTV S+ E ++ L++ + + K F +
Sbjct: 225 KKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFN--LSEKLYSKYILKANFMESL 282
Query: 579 GMGVIYLVTYATWALAFWYGSILV--------ARKELSGGAAIACFFGVNVGGRGLALSL 630
+G+I A++A FWYG+ ++ + GG+ I+ GV + L + L
Sbjct: 283 HIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIIL 342
Query: 631 SYFAQFAQGTVAATRVFEIIDRVPEIDPYNSEGRKLSSVSGKIEFKGVTFAYPSRPETVI 690
++ + A ++EII+R P ++ N +G+KL + KI+FK V F Y +R + I
Sbjct: 343 PNITEYMKSLEATNSLYEIINRKPLVEN-NDDGKKLKDIK-KIQFKNVRFHYDTRKDVEI 400
Query: 691 LRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKG-LITLDGHDLKSLQVKWLRT 749
+ LN + KT A VG SG GKST+ LIER YDPT+G +I D H+LK + +KW R+
Sbjct: 401 YKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRS 460
Query: 750 QIGMVGQEPILFATSILENVLM------------------GKENATMKEAVAACKAASAH 791
+IG+V Q+P+LF+ SI N+ G ++ K +C+A A
Sbjct: 461 KIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAG 520
Query: 792 SF---------------------------------------ISELPLGYDTQVGDRGTQL 812
+S LP Y+T VG ++L
Sbjct: 521 DLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKL 580
Query: 813 SGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAID--KISVGRTTIVIAHRL 870
SGGQKQRI++ARA+I++P+IL+LDE TS+LD++SE +VQ+ I+ K + R TI+IAHRL
Sbjct: 581 SGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRL 640
Query: 871 ATVKNANTIVVL----------------------------------------------DQ 884
+T++ ANTI VL +
Sbjct: 641 STIRYANTIFVLSNRERGSTVDVDIIGEDPTKDNKENNNKNNKDDNNNNNNNNNNKINNA 700
Query: 885 GS-VVEIGNHRQLLE-RGGAYHDLVKLASEAVSQPQSKQKDAKRG--IEFSIYEKSVIEV 940
GS ++E G H L++ + G Y+ ++ ++ VS +S D + ++ S Y+ S
Sbjct: 701 GSYIIEQGTHDALMKNKNGIYYTMIN--NQKVSSKKSSNNDNDKDSDMKSSAYKDSERGY 758
Query: 941 ------SRSRYANE-VSKSKYFKSMQAEIQTVEEE----------QQKPR-PRKFQL--S 980
S++ NE S K K ++KP+ P ++
Sbjct: 759 DPDEMNGNSKHENESASNKKSCKMSDENASENNAGGKLPFLRNLFKRKPKAPNNLRIVYR 818
Query: 981 EIWKLQRPEFAMIIFGFILGMHAGAILSIFPLILGQALQVYFDDTASTLRRDVRYLSLAL 1040
EI+ ++ + +I ++ AG + +F L+ + + FD + L + SL +
Sbjct: 819 EIFSYKK-DVTIIALSILV---AGGLYPVFALLYAKYVSTLFD--FANLEANSNKYSLYI 872
Query: 1041 VGLGFGCIIFMTGQQGFCGWAGTKLTMRVRELLFRSILKQEPGWFDFEENSTGVLVSRLS 1100
+ + I T + + G K+ ++ LF +IL QE +FD ++++ G+L + ++
Sbjct: 873 LVIAIAMFISETLKNYYNNVIGEKVEKTMKRRLFENILYQEISFFDQDKHAPGLLSAHIN 932
Query: 1101 IDSISFRS------VLGDRFSVLLMGLSSAAVGLGVSLVLNWRLT-LVAAALT------- 1146
D ++ V+ F VL + VS+V+++ +VAA LT
Sbjct: 933 RDVHLLKTGLVNNIVIFTHFIVLFL----------VSMVMSFYFCPIVAAVLTGTYFIFM 982
Query: 1147 -PFTLGASYLSLIINVGPKIDNSS------------YAKASSIASGAVSNIRTVTTFSAQ 1193
F + A L+ +V K N + S + A N+ TV + +
Sbjct: 983 RVFAIRAR-LTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLE 1041
Query: 1194 EQIINSFDKALSEPKKKSVKRSQILGLTLGFSQGAMYVAYTFTLWFGAYLVKQGHASFGV 1253
+ N +KA+ K +++ + + GFSQ A +F WFG++L+++G
Sbjct: 1042 DYFCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDD 1101
Query: 1254 VYKIFLILVLSSFSVGQLAGLAPDTSMAATAIPAVLQITKRKPLID-------NVKGRKL 1306
K + + G+L L D+ A + + RK ID +K +
Sbjct: 1102 FMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKND 1161
Query: 1307 ERSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFY 1366
+ K IE+ V F Y SRP V + KD A+VG +GSGKSTV+ L+ RFY
Sbjct: 1162 IKGK---IEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFY 1218
Query: 1367 D-----------------------------------------PNQG-------------K 1372
D +G K
Sbjct: 1219 DLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGK 1278
Query: 1373 VMIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIH 1432
++++GVD+ + N+K LR ++V QEP LF +I +NI G A+ +++ A + A I
Sbjct: 1279 ILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAID 1338
Query: 1433 KFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQ 1492
+FI SLP Y+T VG G LSGGQKQRIAIARA+L+ ++LLLDEA+S+LD SEK ++
Sbjct: 1339 EFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIE 1398
Query: 1493 DALRKVSKRA--TTIVVAHRLSTIREANMIAVV----RDGAVVE-YGSHETLLASHLNGV 1545
+ + +A T I +AHR+++I+ ++ I V R G+ V+ +G+HE LL+ +GV
Sbjct: 1399 KTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQ-DGV 1457
Query: 1546 YASLVR 1551
Y V+
Sbjct: 1458 YKKYVK 1463
|
Length = 1466 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 431 bits (1111), Expect = e-136
Identities = 177/582 (30%), Positives = 306/582 (52%), Gaps = 21/582 (3%)
Query: 332 LFSLFKYSTKLDMILVLLGCIGALINGGALPWYSYFFGNFVNKIANESSDPDKTQMMKDA 391
L KY L+LL + L++ G ++ + + + +
Sbjct: 7 LLKYLKYK------LLLLAILLLLLSALLSLLLPLLIGRIIDALLAD---------LGEL 51
Query: 392 EKICLLMTVLAAIVMMGAYLEITCWRLVGERSAQRIRTKYLRAVLRQDIAFFDTEVSTSD 451
++ LL+ +LA + + L+ +G++ +R +LR ++FFD + D
Sbjct: 52 LELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDKA-KSGD 110
Query: 452 IMHGISSDIAQIQEVMGEKVAHFAHNIFTFICGYTVGFLRSWKVSLVVLSVTPLMMFCGM 511
++ +++D+ + ++ + +I I + F SW+++L++L + PL+
Sbjct: 111 LISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLS 170
Query: 512 AYKAVYVGLTSKEEASYRRAGSVAEQAISSIRTVFSFVAEDHFAVRYAGLLADSIPFGAK 571
L+ + + + +++S IR + +F AED R+ + +
Sbjct: 171 LLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLR 230
Query: 572 LGFAKGAGMGVIYLVTYATWALAFWYGSILVARKELSGGAAIACFFGVNVGGRGLALSLS 631
+ ++ L++ L G LV L+ GA A + +
Sbjct: 231 ASRLEALLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGE 290
Query: 632 YFAQFAQGTVAATRVFEIIDRVPEIDPYNSEGRKLSSVSGKIEFKGVTFAYPSRPETVIL 691
+ + + AA R+FE++D PE++ L G IEF+ V+F+YP + +L
Sbjct: 291 VVSLLQRASAAAERLFELLDEEPEVED---PPDPLKDTIGSIEFENVSFSYP--GKKPVL 345
Query: 692 RSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQI 751
+ ++ I + +A+VG SG GKST+ L+ R YDPT G I +DG D++ + + LR +I
Sbjct: 346 KDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRI 405
Query: 752 GMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQ 811
G+V Q+P+LF+ +I EN+ +G+ +AT +E A K A+AH FI+ LP GYDT VG+RG
Sbjct: 406 GIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVN 465
Query: 812 LSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLA 871
LSGGQ+QR+A+ARA++++P IL+LDE TSALD+E+E+++Q A+ K+ GRTT++IAHRL+
Sbjct: 466 LSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLS 525
Query: 872 TVKNANTIVVLDQGSVVEIGNHRQLLERGGAYHDLVKLASEA 913
T+KNA+ I+VLD G +VE G H +LL +GG Y L + A
Sbjct: 526 TIKNADRIIVLDNGRIVERGTHEELLAKGGLYARLYQAQGGA 567
|
Length = 567 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 416 bits (1072), Expect = e-135
Identities = 143/238 (60%), Positives = 183/238 (76%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
IEFK V+F YPSRP+ IL+ L+L IP KT+ALVG+SG GKSTV +L+ERFYDPT G I
Sbjct: 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60
Query: 733 TLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHS 792
LDG D++ L ++WLR+QIG+V QEP+LF +I EN+ GK +AT +E A K A+ H
Sbjct: 61 LLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHD 120
Query: 793 FISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQ 852
FI LP GYDT VG+RG+QLSGGQKQRIA+ARA++++P+ILLLDE TSALD+ESE +VQ+
Sbjct: 121 FIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQE 180
Query: 853 AIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLERGGAYHDLVKLA 910
A+D+ GRTTIVIAHRL+T++NA+ I VL G VVE G H +L+ + G Y LVK
Sbjct: 181 ALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKGVYAKLVKAQ 238
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 414 bits (1067), Expect = e-129
Identities = 189/579 (32%), Positives = 316/579 (54%), Gaps = 16/579 (2%)
Query: 979 LSEIWKLQRPEFAMIIFGFILGMHAGAILSIFPLILGQALQVYFDDTASTLRRDVRYLSL 1038
L + K + + +++ +L + + + + PL++G+ + D L L L
Sbjct: 4 LRRLLKYLK--YKLLLLAILLLLLSALLSLLLPLLIGRIIDALLADLGELLE-----LLL 56
Query: 1039 ALVGLGFGCIIFMTGQQGFCGWAGTKLTMRVRELLFRSILKQEPGWFDFEENSTGVLVSR 1098
L+ L + Q G K+ +R LF +L+ +FD + +G L+SR
Sbjct: 57 LLLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFD--KAKSGDLISR 114
Query: 1099 LSIDSISFRSVLGDRFSVLLMGLSSAAVGLGVSLVLNWRLTLVAAALTPF-TLGASYLSL 1157
L+ D + +++ ++ + L + L+WRL L+ + P L S L+
Sbjct: 115 LTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLAR 174
Query: 1158 IINVGPKIDNSSYAKASSIASGAVSNIRTVTTFSAQEQIINSFDKALSEPKKKSVKRSQI 1217
+ + + ++ ++S IR + F A+++ + F++A E ++ +++ S++
Sbjct: 175 KSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRL 234
Query: 1218 LGLTLGFSQGAMYVAYTFTLWFGAYLVKQGHASFGVVYKIFLILVLSSFSVGQLAGLAPD 1277
L + L G +LV G + G + L L+ + QL +
Sbjct: 235 EALLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSL 294
Query: 1278 TSMAATAIPAVLQITKRKPLIDNVKGRKLERSKPLGIELKMVTFTYPSRPEVTVLKDFCL 1337
A+ A + ++ +P +++ + IE + V+F+YP + VLKD
Sbjct: 295 LQRASAAAERLFELLDEEPEVEDPPDPLKDTIG--SIEFENVSFSYPGKK--PVLKDISF 350
Query: 1338 KVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQ 1397
++ G VA+VG SGSGKST+I L+ R YDP G+++I+G+D+R+I++ LRK+ +V Q
Sbjct: 351 SIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQ 410
Query: 1398 EPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQ 1457
+P LF+GTIR+NIALG P A+ EIEEA + A H+FI++LP GY+T VGE GV LSGGQ
Sbjct: 411 DPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQ 470
Query: 1458 KQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIREA 1517
+QR+AIARA+L+ +L+LDEA+SALD E+E +QDAL+K+ K TT+++AHRLSTI+ A
Sbjct: 471 RQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNA 530
Query: 1518 NMIAVVRDGAVVEYGSHETLLASHLNGVYASLVRAETEA 1556
+ I V+ +G +VE G+HE LLA G+YA L +A+ A
Sbjct: 531 DRIIVLDNGRIVERGTHEELLAK--GGLYARLYQAQGGA 567
|
Length = 567 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 403 bits (1038), Expect = e-123
Identities = 204/605 (33%), Positives = 314/605 (51%), Gaps = 51/605 (8%)
Query: 321 EDDAEVAKPVGLFSLFKYSTK----LDMILVLLGCIGALINGGALPWYSYFFGNFVNKIA 376
+ +E A LF L S + L V L + + +P+Y+ G ++ +
Sbjct: 140 QGQSETADL--LFRLLGLSGRDWPWLISAFVFLTL--SSLGEMFIPFYT---GRVIDTLG 192
Query: 377 NESSDPDKTQMMKDAEKICLLMTVLAAIVMMGAYLEITCWRLVGERSAQRIRTKYLRAVL 436
+ P + M +L+ + A L + R RIR R++L
Sbjct: 193 GDKGPPALASAI-------FFMCLLSIASSVSAGLRGGSFNYTMARINLRIREDLFRSLL 245
Query: 437 RQDIAFFDTEVSTSDIMHGISSDIAQIQEVMGEKVAHFAHNIFTFICGYTVGFLRSWKVS 496
RQD+ FFD E T ++ +SSD + + V N+ + S +++
Sbjct: 246 RQDLGFFD-ENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLT 304
Query: 497 LVVLSVTPLMMFCGMAYKAVYVGLTSKEEASYRRAGSVAEQAISSIRTVFSFVAEDHFAV 556
+V L PL+ + Y L+ + + + +A VAE+A+S +RTV SF AE+ A
Sbjct: 305 MVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEAS 364
Query: 557 RYAGLLADSIPFGAKLGFAKGA--------GMGVIYLVTYATWALAFWYGSILVARKELS 608
R+ L +++ + A GM + LV +YG LV ++S
Sbjct: 365 RFKEALEETLQLNKRKALAYAGYLWTTSVLGMLIQVLV--------LYYGGQLVLTGKVS 416
Query: 609 GGAAIACF------FGVNVGGRGLALSLSYFAQFAQGTVAATRVFEIIDRVPEIDPYNSE 662
G ++ F G V R L ++ Q A+ +VFE +DR P I +
Sbjct: 417 SGNLVS-FLLYQEQLGEAV--RVL---SYVYSGMMQAVGASEKVFEYLDRKPNIPL--TG 468
Query: 663 GRKLSSVSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIE 722
++ G IEF+ V+F+YP+RP+ +L+ L + + +ALVG SG GKSTV AL++
Sbjct: 469 TLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQ 528
Query: 723 RFYDPTKGLITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAV 782
Y PT G + LDG L +L Q+ +VGQEP+LF+ S+ EN+ G + +E +
Sbjct: 529 NLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIM 588
Query: 783 AACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSAL 842
AA KAA+AH FI E P GYDT+VG++G+QLSGGQKQRIA+ARA+++ PR+L+LDE TSAL
Sbjct: 589 AAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSAL 648
Query: 843 DSESESIVQQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLERGGA 902
D+E E ++Q+ + RT ++IAHRL+TV+ A+ I+VL +GSVVE+G H+QL+E G
Sbjct: 649 DAECEQLLQE--SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQGC 706
Query: 903 YHDLV 907
Y LV
Sbjct: 707 YKHLV 711
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 378 bits (973), Expect = e-121
Identities = 144/239 (60%), Positives = 184/239 (76%), Gaps = 2/239 (0%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
IE K V+F YPSRP+V +LK L + G VALVG SG GKSTV+ L++RFYDP G++
Sbjct: 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60
Query: 1374 MIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHK 1433
+++GVD+R++N++WLR Q LV QEP LF GTI +NI G P A+ E+EEAA++A IH
Sbjct: 61 LLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHD 120
Query: 1434 FISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQD 1493
FI SLP GY+T VGE G QLSGGQKQRIAIARA+L+ ++LLLDEA+SALD ESEK VQ+
Sbjct: 121 FIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQE 180
Query: 1494 ALRKVSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETLLASHLNGVYASLVRA 1552
AL + K TTIV+AHRLSTIR A++IAV+++G VVE G+H+ L+A GVYA LV+A
Sbjct: 181 ALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQK--GVYAKLVKA 237
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 385 bits (992), Expect = e-119
Identities = 195/517 (37%), Positives = 293/517 (56%), Gaps = 7/517 (1%)
Query: 396 LLMTVLAAIVMMGAYLEITCWRLVGERSAQRIRTKYLRAVLRQDIAFFDTEVSTSDIMHG 455
+ V+A ++ +G +GER IR ++ +FFD + +++
Sbjct: 62 AFLLVVALVLALGTAARFYLVTWLGERVVADIRRAVFAHLISLSPSFFDK-NRSGEVVSR 120
Query: 456 ISSDIAQIQEVMGEKVAHFAHNIFTFICGYTVGFLRSWKVSLVVLSVTPLMMFCGMAYKA 515
+++D +Q V+G ++ N I G + F+ S K++ +VL PL++ + +
Sbjct: 121 LTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLAVPLVLLPILLFGR 180
Query: 516 VYVGLTSKEEASYRRAGSVAEQAISSIRTVFSFVAEDHFAVRYAGLLADSIPFGAKLGFA 575
L+ + + AGS A + + +IRTV +F ED R+ G + + +
Sbjct: 181 RVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRT 240
Query: 576 KGA-GMGVIYLVTYATWALAFWYGSILVARKELSGGAAIA-CFFGVNVGGRGLALSLSYF 633
+ VI LV + W G+ V ++S G F+ V V G LS +
Sbjct: 241 RALLTAIVIVLV-FGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLS-EVW 298
Query: 634 AQFAQGTVAATRVFEIIDRVPEIDPYNSEGRKLSS-VSGKIEFKGVTFAYPSRPETVILR 692
+ + AA R+ E++ P+I + + L + G+IEF+ V FAYP+RP+ L
Sbjct: 299 GELQRAAGAAERLIELLQAEPDIKA-PAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALD 357
Query: 693 SLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIG 752
LNL + +T+ALVG SG GKST+F L+ RFYDP G I LDG DL+ L LR ++
Sbjct: 358 GLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMA 417
Query: 753 MVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQL 812
+V Q+P+LFA S++EN+ G+ +AT +E AA +AA AH FIS LP GYDT +G+RG L
Sbjct: 418 LVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTL 477
Query: 813 SGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLAT 872
SGGQ+QRIA+ARA++KD ILLLDE TSALD+ESE +VQQA++ + GRTT++IAHRLAT
Sbjct: 478 SGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLAT 537
Query: 873 VKNANTIVVLDQGSVVEIGNHRQLLERGGAYHDLVKL 909
V A+ IVV+DQG +V G H +L+ +GG Y L +L
Sbjct: 538 VLKADRIVVMDQGRIVAQGTHAELIAKGGLYARLARL 574
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 362 bits (930), Expect = e-110
Identities = 199/587 (33%), Positives = 309/587 (52%), Gaps = 33/587 (5%)
Query: 979 LSEIWKLQRPEFAMIIFGFILGMHAGAILSIFPLILGQALQVYFDD--TASTLRRDVRYL 1036
L+ +W RP ++ + A I + L L A+++ D + + RY
Sbjct: 6 LAALWPFVRPYRGRVLAALV----ALLITAAATLSLPYAVRLMIDHGFSKDSSGLLNRYF 61
Query: 1037 SLALV-----GLGFGCIIFMTGQQGFCGWAGTKLTMRVRELLFRSILKQEPGWFDFEENS 1091
+ LV LG + W G ++ +R +F ++ P +FD +N
Sbjct: 62 AFLLVVALVLALGTAARFY------LVTWLGERVVADIRRAVFAHLISLSPSFFD--KNR 113
Query: 1092 TGVLVSRLSIDSISFRSVLGDRFSVLLMGLSSAAVGLGVSLVLNWRLTLVAAALTPFTLG 1151
+G +VSRL+ D+ +SV+G S+ L GL + + + +LT + P L
Sbjct: 114 SGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLAVPLVLL 173
Query: 1152 ASYLSLIINVGPKIDNSS------YAKASSIASGAVSNIRTVTTFSAQEQIINSFDKALS 1205
I+ G ++ S A A S A + IRTV F ++ + F A+
Sbjct: 174 P-----ILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVE 228
Query: 1206 EPKKKSVKRSQILGLTLGFSQGAMYVAYTFTLWFGAYLVKQGHASFGVVYKIFLILVLSS 1265
+ + + +R + L ++ A LW GA+ V G S G + + V+ +
Sbjct: 229 KAYEAARQRIRTRALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVA 288
Query: 1266 FSVGQLAGLAPDTSMAATAIPAVLQITKRKPLIDNVKG-RKLERSKPLGIELKMVTFTYP 1324
S+G L+ + + AA A ++++ + +P I + L IE + V F YP
Sbjct: 289 GSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAHPKTLPVPLRGEIEFEQVNFAYP 348
Query: 1325 SRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREIN 1384
+RP+ L L V+ G VALVG SG+GKST+ L+ RFYDP G+++++GVDLR+++
Sbjct: 349 ARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLD 408
Query: 1385 VKWLRKQTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYET 1444
LR + ALV Q+P LFA ++ +NI G P A+ E+E AA A+ H+FIS+LP+GY+T
Sbjct: 409 PAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDT 468
Query: 1445 QVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATT 1504
+GE GV LSGGQ+QRIAIARAILK + +LLLDEA+SALD ESE+ VQ AL + K TT
Sbjct: 469 YLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTT 528
Query: 1505 IVVAHRLSTIREANMIAVVRDGAVVEYGSHETLLASHLNGVYASLVR 1551
+++AHRL+T+ +A+ I V+ G +V G+H L+A G+YA L R
Sbjct: 529 LIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAK--GGLYARLAR 573
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 363 bits (933), Expect = e-109
Identities = 210/602 (34%), Positives = 312/602 (51%), Gaps = 46/602 (7%)
Query: 966 EEEQQKPRPRKFQLSEIWKLQRPEFAMIIFGFILGMHAGAILSIFPLILGQALQVYFDD- 1024
E+ Q + F+L L ++ +I F+ + P G+ + D
Sbjct: 139 EQGQSETADLLFRL---LGLSGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDK 195
Query: 1025 TASTLRRDVRYLSL------ALVGLGFGCIIFMTGQQGFCGWAGTKLTMRVRELLFRSIL 1078
L + ++ L GL G + ++ +R+RE LFRS+L
Sbjct: 196 GPPALASAIFFMCLLSIASSVSAGLRGGSFNYTMA----------RINLRIREDLFRSLL 245
Query: 1079 KQEPGWFDFEENSTGVLVSRLSIDSISFRSVLGDRFSVLLMGLSSAAVGLGVSLVLNWRL 1138
+Q+ G+FD EN TG L SRLS D+ + L +VLL L LG L L+ RL
Sbjct: 246 RQDLGFFD--ENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRL 303
Query: 1139 TLVAAALTPFTLGAS--YLSLIINVGPKIDNSSYAKASSIASGAVSNIRTVTTFSAQEQI 1196
T+V P A + + ++ + AKA+ +A A+S +RTV +F+A+E
Sbjct: 304 TMVTLINLPLVFLAEKVFGKRYQLLSEELQEAV-AKANQVAEEALSGMRTVRSFAAEEGE 362
Query: 1197 INSFDKALSEP----KKKSVKRSQILGLTLGFSQGAMYVAYTFTLWFGAYLVKQGHASFG 1252
+ F +AL E K+K++ + L T + V L++G LV G S G
Sbjct: 363 ASRFKEALEETLQLNKRKALAYAGYL-WTTSVLGMLIQVL---VLYYGGQLVLTGKVSSG 418
Query: 1253 VVYKIFLILVLSSFSVGQ----LAGLAPDTSMAATAIPAVLQITKRKPLIDNVKGRKLER 1308
+ + +L +G+ L+ + A A V + RKP I
Sbjct: 419 NL----VSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGTLAPLN 474
Query: 1309 SKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDP 1368
+ L IE + V+F+YP+RP+V VLK + G +VALVG SGSGKSTV L+Q Y P
Sbjct: 475 LEGL-IEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQP 533
Query: 1369 NQGKVMIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEE 1428
G+V+++GV L + + +L +Q ALVGQEP LF+G++R+NIA G EI AA+
Sbjct: 534 TGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKA 593
Query: 1429 AYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESE 1488
A H FI P GY+T+VGE G QLSGGQKQRIAIARA+++ RVL+LDEA+SALD E E
Sbjct: 594 ANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECE 653
Query: 1489 KHVQDALRKVSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETLLASHLNGVYAS 1548
+ +Q++ + S+ T +++AHRLST+ A+ I V++ G+VVE G+H+ L+ G Y
Sbjct: 654 QLLQESRSRASR--TVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMED--QGCYKH 709
Query: 1549 LV 1550
LV
Sbjct: 710 LV 711
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 356 bits (915), Expect = e-106
Identities = 191/621 (30%), Positives = 304/621 (48%), Gaps = 45/621 (7%)
Query: 952 SKYFKSMQAEIQTVEEEQQKPRPRKFQLSEIWKL---QRPEFAMIIFGFILGMHAGAILS 1008
K + + + + K P F LS L R ++ A +L
Sbjct: 116 EKLWTGIALLLAPTASRKFKDIP-PFGLSWFIPLLFKYRRLLFEVLL-------ASLLLQ 167
Query: 1009 IFPLILGQALQVYFDDTASTLRRDVR--YLSLALVGLGFGC-IIFMTGQQGFCGWA---- 1061
+ L Q+ D +L ++ +G +F + +
Sbjct: 168 LLALATPLFSQIVIDKV------LPDASRSTLTVLAIGLLLAALFEALLRLLRTYLIAHL 221
Query: 1062 GTKLTMRVRELLFRSILKQEPGWFDFEENSTGVLVSRLS-IDSISFRSVLGDRFSVLLMG 1120
G +L + + FR +L+ +F E+ S G ++SR+ ++ I R L L++
Sbjct: 222 GKRLDLELSGRFFRHLLRLPLSYF--EKRSVGEIISRVRELEQI--REFLTGSILTLIID 277
Query: 1121 LSSAAVGLGVSLVLNWRLTLVAAALTPFTLGASYLSLIINVGPKIDN------SSYAKAS 1174
L A + L V + +W+LTL+ A P + + + P + A+
Sbjct: 278 LLFALIFLAVMFLYSWKLTLIVLAAIPL-----NVLITLIFQPLLRRKTRKLIEESAEQQ 332
Query: 1175 SIASGAVSNIRTVTTFSAQEQIINSFDKALSEPKKKSVKRSQILGLTLGFSQGAMY-VAY 1233
S + I TV +A+ + + +D L++ K ++ L L L + + ++
Sbjct: 333 SFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFK-TEKLALILNTIKSLLQQLSS 391
Query: 1234 TFTLWFGAYLVKQGHASFGVVYKIFLILVLSSFSVGQLAGLAPDTSMAATAIPAVLQITK 1293
LWFGA LV +G + G + ++ + +L+ L D A A+ + I
Sbjct: 392 VLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILD 451
Query: 1294 RKPLIDNVKGRKLERSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGS 1353
P + K IE + V+F Y VL+D L++ G VA+VG SGS
Sbjct: 452 TPPEQEGDKTLIHLPKLQGEIEFENVSFRYGPDDPP-VLEDLSLEIPPGEKVAIVGRSGS 510
Query: 1354 GKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALG 1413
GKST++ L+ Y P QG+++++GVDL +I++ LR+Q V Q+P LF+G+IR+NIALG
Sbjct: 511 GKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALG 570
Query: 1414 NPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRV 1473
NP+A+ EI EAA+ A H+FI +LP GY+T VGE G LSGGQ+QR+A+ARA+L ++
Sbjct: 571 NPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKI 630
Query: 1474 LLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGS 1533
LLLDEA+SALD E+E + L ++ + T I++AHRLSTIR A+ I V+ G +VE GS
Sbjct: 631 LLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGS 690
Query: 1534 HETLLASHLNGVYASLVRAET 1554
HE LLA G+YA L + +
Sbjct: 691 HEELLAQ--GGLYARLYQQQE 709
|
Length = 709 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 355 bits (914), Expect = e-106
Identities = 184/524 (35%), Positives = 283/524 (54%), Gaps = 23/524 (4%)
Query: 397 LMTVLAAIVMMGAYLEITC-----WRLV--GERSAQRIRTKYLRAVLRQDIAFFDTEVST 449
+TVLA +++ A E + + G+R + ++ R +LR +++F+ S
Sbjct: 192 TLTVLAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFEKR-SV 250
Query: 450 SDIMHGISSDIAQIQEVMGEKVAHFAHNIFTFICGYTVGFLRSWKVSLVVLSVTPLMMFC 509
+I+ + ++ QI+E + + ++ + V FL SWK++L+VL+ PL +
Sbjct: 251 GEIISRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLI 309
Query: 510 GMAYKAVYVGLTSKEEASYRRAGSVAEQAISSIRTVFSFVAEDHFAVRYAGLLADSIPFG 569
+ ++ + T K S + I I TV + AE F ++ LA + G
Sbjct: 310 TLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIG 369
Query: 570 AKLGFAK---GAGMGVIYLVTYATWALAFWYGSILVARKELSGGAAIACFFGVNVGGR-- 624
K ++ ++ L W+G+ILV EL+ G +A + G
Sbjct: 370 FKTEKLALILNTIKSLLQQLSSV---LILWFGAILVLEGELTLGQLVAFNM---LAGYFI 423
Query: 625 GLALSLS-YFAQFAQGTVAATRVFEIIDRVPEIDPYNSEGRKLSSVSGKIEFKGVTFAYP 683
LS + F Q VA R+ +I+D PE + L + G+IEF+ V+F Y
Sbjct: 424 SPITRLSQLWTDFQQAKVALERLGDILDTPPE-QEGDKTLIHLPKLQGEIEFENVSFRYG 482
Query: 684 SRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQ 743
+L L+L IP + +A+VG SG GKST+ L+ Y P +G I LDG DL +
Sbjct: 483 PDDP-PVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDID 541
Query: 744 VKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDT 803
+ LR Q+G V Q+P LF+ SI EN+ +G AT +E + A + A AH FI LP+GYDT
Sbjct: 542 LASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDT 601
Query: 804 QVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTT 863
VG+ G LSGGQ+QR+ALARA++ P+ILLLDE TSALD E+E+I+ Q + +I GRT
Sbjct: 602 PVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTV 661
Query: 864 IVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLERGGAYHDLV 907
I+IAHRL+T+++A+ I+VLDQG +VE G+H +LL +GG Y L
Sbjct: 662 IIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQGGLYARLY 705
|
Length = 709 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 335 bits (861), Expect = e-105
Identities = 127/234 (54%), Positives = 169/234 (72%), Gaps = 1/234 (0%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
+EFK VTF YP V LR ++L IP+ +T+ALVG SG GKST+ LI RFYD G I
Sbjct: 1 VEFKNVTFRYPGDGPPV-LRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRI 59
Query: 733 TLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHS 792
+DGHD++ + LR QIG+V Q+ LF ++ EN+ G+ AT +E A +AA+AH
Sbjct: 60 LIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHE 119
Query: 793 FISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQ 852
FI ELP GYDT +G+RG +LSGGQ+QRIA+ARA++KDP IL+LDE TSALD+ESE +VQ
Sbjct: 120 FIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQA 179
Query: 853 AIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLERGGAYHDL 906
A++++ RTT VIAHRL+T++NA+ IVVL+ G +VE G H +LL +GG Y L
Sbjct: 180 ALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGGVYAKL 233
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 321 bits (824), Expect = e-100
Identities = 128/236 (54%), Positives = 165/236 (69%), Gaps = 3/236 (1%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
+E K VTF YP VL+D L + G VALVG SGSGKST++ LI RFYD + G++
Sbjct: 1 VEFKNVTFRYPGDGP-PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRI 59
Query: 1374 MIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHK 1433
+I+G D+R+ + LR+Q LV Q+ LF T+ +NIA G P A+ E+EEAA A H+
Sbjct: 60 LIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHE 119
Query: 1434 FISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQD 1493
FI LP+GY+T +GE GV+LSGGQ+QRIAIARA+LK +L+LDEA+SALD ESE+ VQ
Sbjct: 120 FIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQA 179
Query: 1494 ALRKVSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETLLASHLNGVYASL 1549
AL ++ K TT V+AHRLSTI A+ I V+ DG +VE G+HE LLA GVYA L
Sbjct: 180 ALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLA--QGGVYAKL 233
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 327 bits (840), Expect = 4e-98
Identities = 187/581 (32%), Positives = 291/581 (50%), Gaps = 34/581 (5%)
Query: 982 IWKLQRPEFAMIIFGFILGMHAGAILSIFPLILGQALQVYFDDTAS-TLRRDVRYLSLAL 1040
+W RP A ++ + + A S +L L DD R + ++ L +
Sbjct: 5 LWSYVRPYKAGLVLAGVAMILVAATESTLAALLKPLL----DDGFGGRDRSVLWWVPLVV 60
Query: 1041 VGL-------GFGCIIFMTGQQGFCGWAGTKLTMRVRELLFRSILKQEPGWFDFEENSTG 1093
+GL F ++ W K+ +R +F +L P F F+ TG
Sbjct: 61 IGLAVLRGICSFVSTYLLS-------WVSNKVVRDIRVRMFEKLL-GLPVSF-FDRQPTG 111
Query: 1094 VLVSRLSIDSISFRSVLGDRFSVLLMGLSSAAVGLGVSLVLNWRLTLVAAALTPFTLGAS 1153
L+SR++ DS S D F VL+ + V L +W+LTL+ + P
Sbjct: 112 TLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILM 171
Query: 1154 --YLSLIINVGPKIDNSSYAKASSIASGAVSNIRTVTTFSAQEQIINSFDKALSEPKKKS 1211
+ + +I NS + +++A + R V F Q FD + ++ +
Sbjct: 172 RRVSKRLRRISKEIQNSM-GQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLA 230
Query: 1212 VKRSQILGLTLGFSQGAMYVAYTFTLWFGAYLVKQGHASFG--VVYKIFLILVLSSFSVG 1269
+K + ++ +Q +A L+ + + G + G + +I ++ +
Sbjct: 231 MKMTSAGSISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRP--LK 288
Query: 1270 QLAGLAPDTSMAATAIPAVLQITKRKPLIDNVKGRKLERSKPLGIELKMVTFTYPSRPEV 1329
L + A ++ + P D R +ER++ +E + VTF YP R +
Sbjct: 289 SLTNVNAPMQRGLAAAESLFTLLDSPPEKDT-GTRAIERARGD-VEFRNVTFRYPGR-DR 345
Query: 1330 TVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLR 1389
L L ++ G VALVG SGSGKST++ LI RFY+P+ G+++++G DL + + LR
Sbjct: 346 PALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLR 405
Query: 1390 KQTALVGQEPALFAGTIRDNIALGNPK-ASWAEIEEAAEEAYIHKFISSLPQGYETQVGE 1448
+Q ALV Q+ LF TI +NIA G + A AEIE A AY F+ LP G +T +GE
Sbjct: 406 RQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGE 465
Query: 1449 SGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVA 1508
+GV LSGGQ+QR+AIARA+LK + +L+LDEA+SALD ESE+ VQ AL ++ + TT+V+A
Sbjct: 466 NGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIA 525
Query: 1509 HRLSTIREANMIAVVRDGAVVEYGSHETLLASHLNGVYASL 1549
HRLSTI +A+ I V+ DG +VE G+H LLA NG+YA L
Sbjct: 526 HRLSTIEKADRIVVMDDGRIVERGTHNELLAR--NGLYAQL 564
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 310 bits (797), Expect = 8e-97
Identities = 118/235 (50%), Positives = 165/235 (70%), Gaps = 4/235 (1%)
Query: 673 IEFKGVTFAY-PSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGL 731
IEF+ VTFAY P RP +L+ ++ IP+ K +A+VG SG GKST+ L+ RFYD + G
Sbjct: 1 IEFENVTFAYDPGRP---VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGS 57
Query: 732 ITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAH 791
I +DG D++ + + LR IG+V Q+ +LF +I N+ G+ +AT +E + A KAA H
Sbjct: 58 ILIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIH 117
Query: 792 SFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQ 851
I P GYDT VG+RG +LSGG+KQR+A+ARA++K+P ILLLDE TSALD+ +E +Q
Sbjct: 118 DKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQ 177
Query: 852 QAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLERGGAYHDL 906
A+ +S GRTTIVIAHRL+T+ NA+ I+VL G +VE G H +LL +GG Y ++
Sbjct: 178 AALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLYAEM 232
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 310 bits (796), Expect = 1e-96
Identities = 110/231 (47%), Positives = 169/231 (73%), Gaps = 2/231 (0%)
Query: 671 GKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKG 730
G+IEF+ V F+Y + +L+ +N I +T+A+VG +G GK+T+ L+ RFYDP KG
Sbjct: 1 GEIEFENVNFSY--DEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKG 58
Query: 731 LITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASA 790
I +DG D++ + K LR+ IG+V Q+ LF+ +I+EN+ +G+ NAT +E + A K A A
Sbjct: 59 QILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGA 118
Query: 791 HSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIV 850
H FI +LP GYDT +G+ G LS G++Q +A+ARAM++DP+IL+LDE TS +D+E+E ++
Sbjct: 119 HDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLI 178
Query: 851 QQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLERGG 901
Q+A++K+ GRT+I+IAHRL+T+KNA+ I+VLD G ++E G H +LL + G
Sbjct: 179 QEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAKKG 229
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 319 bits (820), Expect = 3e-95
Identities = 178/576 (30%), Positives = 284/576 (49%), Gaps = 39/576 (6%)
Query: 345 ILVLLGCIGALINGGALPWYSYFFGNFVNKIANESSDPDKTQMMKDAEKICLLMTVLAAI 404
++L + ++ + ++ D + L++ LA +
Sbjct: 14 AGLVLAGVAMILVAATESTLAALLKPLLDDGFGGR-DRSVLWWVP------LVVIGLAVL 66
Query: 405 VMMGAYLEITCWRLVGERSAQRIRTKYLRAVLRQDIAFFDTEVSTSDIMHGISSDIAQIQ 464
+ +++ V + + IR + +L ++FFD + + + + I+ D Q
Sbjct: 67 RGICSFVSTYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSR-ITFDSEQ-- 123
Query: 465 EVMGEKVAHFAHNIFTFIC--GYTVGFL------RSWKVSLVVLSVTPLMMFCGMAYKAV 516
VA A + F + TV L SW+++L+V+ + P++
Sbjct: 124 ------VASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRVSKR 177
Query: 517 YVGLTSKEEASYRRAGSVAEQAISSIRTVFSFVAEDHFAVRYAGLLADSIPFGAKLGFAK 576
++ + + S + +VAE+ + R V F + + R+ + + K+ A
Sbjct: 178 LRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAG 237
Query: 577 GAGMGVIYLVTYATWALAFWYGSILVARKELSGGAAIACFFGVNVGGRGLAL----SLSY 632
+ L+ ALA + +A + G+ A F + + SL+
Sbjct: 238 SISSPITQLIASL--ALAV---VLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTN 292
Query: 633 FAQFAQ-GTVAATRVFEIIDRVPEIDPYNSEGRKLSSVSGKIEFKGVTFAYPSRPETVIL 691
Q G AA +F ++D PE D + R + G +EF+ VTF YP R + L
Sbjct: 293 VNAPMQRGLAAAESLFTLLDSPPEKD---TGTRAIERARGDVEFRNVTFRYPGR-DRPAL 348
Query: 692 RSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQI 751
S++LVI +T+ALVG SG GKST+ LI RFY+P G I LDGHDL + LR Q+
Sbjct: 349 DSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQV 408
Query: 752 GMVGQEPILFATSILENVLMGK-ENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGT 810
+V Q+ +LF +I N+ G+ E A E A AA A F+ +LPLG DT +G+ G
Sbjct: 409 ALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGV 468
Query: 811 QLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRL 870
LSGGQ+QR+A+ARA++KD IL+LDE TSALD+ESE +VQ A++++ GRTT+VIAHRL
Sbjct: 469 LLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRL 528
Query: 871 ATVKNANTIVVLDQGSVVEIGNHRQLLERGGAYHDL 906
+T++ A+ IVV+D G +VE G H +LL R G Y L
Sbjct: 529 STIEKADRIVVMDDGRIVERGTHNELLARNGLYAQL 564
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 297 bits (762), Expect = 6e-92
Identities = 123/236 (52%), Positives = 160/236 (67%), Gaps = 4/236 (1%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
IE + VTF Y P VLKD + G VA+VG SGSGKST++ L+ RFYD + G +
Sbjct: 1 IEFENVTFAYD--PGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSI 58
Query: 1374 MIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHK 1433
+I+G D+RE+ + LR+ +V Q+ LF TI NI G P A+ E+ EAA+ A IH
Sbjct: 59 LIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHD 118
Query: 1434 FISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQD 1493
I P GY+T VGE G++LSGG+KQR+AIARAILK +LLLDEA+SALD +E+ +Q
Sbjct: 119 KIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQA 178
Query: 1494 ALRKVSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETLLASHLNGVYASL 1549
ALR VSK TTIV+AHRLSTI A+ I V++DG +VE G+HE LLA G+YA +
Sbjct: 179 ALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLA--KGGLYAEM 232
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 299 bits (767), Expect = 8e-87
Identities = 155/444 (34%), Positives = 236/444 (53%), Gaps = 22/444 (4%)
Query: 478 IFTFICGYTVGFLRSWKVSLVVLSVTPLMMFCGMAYKAVYVG----LTSKEEASYRR--- 530
+F + V F S ++ VV+ Y + V L + E + R
Sbjct: 264 LFVVVF-LAVMFFYSPTLTGVVIGSLV-------CYALLSVFVGPILRKRVEDKFERSAA 315
Query: 531 AGSVAEQAISSIRTVFSFVAEDHFAVRYAGLLADSIPFGAKLGFAKGAGMGVIYLVTYAT 590
A S ++++ I T+ + E F R+ LA + ++ I L+ T
Sbjct: 316 ATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLT 375
Query: 591 WALAFWYGSILVARKELSGGAAIAC-FFGVNVGGRGLALSLSYFAQFAQGTVAATRVFEI 649
+A+ W+G+ LV LS G +A V L L+ + F Q +A R+ +I
Sbjct: 376 FAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLA-QLWQDFQQTGIALERLGDI 434
Query: 650 IDRVPEIDPYNSEGRKLSSVSGKIEFKGVTFAY-PSRPETVILRSLNLVIPSSKTLALVG 708
++ E P ++ L + G I F+ + F Y P PE +L +LNL I + + +VG
Sbjct: 435 LNSPTE--PRSAGLAALPELRGAITFENIRFRYAPDSPE--VLSNLNLDIKPGEFIGIVG 490
Query: 709 TSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILEN 768
SG GKST+ L++R Y P G + +DG DL WLR Q+G+V QE +LF+ SI +N
Sbjct: 491 PSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDN 550
Query: 769 VLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIK 828
+ + A + + A K A AH FISELP GY+T+VG++G LSGGQ+QRIA+ARA++
Sbjct: 551 IALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVG 610
Query: 829 DPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVV 888
+PRIL+ DE TSALD ESE+++ + + +I GRT I+IAHRL+TV+ + I+VL++G +
Sbjct: 611 NPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIA 670
Query: 889 EIGNHRQLLERGGAYHDLVKLASE 912
E G H +LL G Y L + S
Sbjct: 671 ESGRHEELLALQGLYARLWQQQSG 694
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 281 bits (720), Expect = 2e-86
Identities = 110/228 (48%), Positives = 163/228 (71%), Gaps = 2/228 (0%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
IE + V F+Y + VLKD +K G VA+VG +G+GK+T+I L+ RFYDP +G++
Sbjct: 3 IEFENVNFSY--DEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQI 60
Query: 1374 MIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHK 1433
+I+G+D+R+I+ K LR +V Q+ LF+GTI +NI LG P A+ E+ EAA+EA H
Sbjct: 61 LIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHD 120
Query: 1434 FISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQD 1493
FI LP GY+T +GE+G LS G++Q +AIARA+L+ ++L+LDEA+S +D E+EK +Q+
Sbjct: 121 FIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQE 180
Query: 1494 ALRKVSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETLLASH 1541
AL K+ K T+I++AHRLSTI+ A+ I V+ DG ++E G+H+ LLA
Sbjct: 181 ALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAKK 228
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 293 bits (752), Expect = 4e-86
Identities = 205/591 (34%), Positives = 305/591 (51%), Gaps = 80/591 (13%)
Query: 1003 AGAILSIFPLILGQA--------LQVYFDDTASTLRRDV-RYLSLALVGLGFGCIIFMTG 1053
AG I++ LIL A L+ DD R V +++ L ++GL + + G
Sbjct: 25 AGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKADRSVLKWMPLVVIGL-----MILRG 79
Query: 1054 QQGF----C-GWAGTKLTMRVRELLFRSILKQEPGWFDFEENSTGVLVSRLSIDSISFRS 1108
F C W K+ M +R LF ++ +FD + STG L+SR++ DS
Sbjct: 80 ITSFISSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFD--KQSTGTLLSRITYDS---EQ 134
Query: 1109 VLGDRFSVLLMGLSSAA--VGLGVSLVLN-WRLTLVAAALTPFTLGASYLSLII------ 1159
V L+ + A +GL + + W+L+L+ + P +S+ I
Sbjct: 135 VASSSSGALITVVREGASIIGLFIMMFYYSWQLSLILIVIAPI------VSIAIRVVSKR 188
Query: 1160 --NVGPKIDNSSYAKASSIASGAVSNIRTVTTFSAQEQIINSFDKALSEPKKKSVKRSQI 1217
N+ + N+ + ++ A + + V F QE FDK + +++ +K
Sbjct: 189 FRNISKNMQNT-MGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMK---- 243
Query: 1218 LGLTLGFSQGAMYVAYTFTLWFGAYLVKQGHASFGVVYKIFLILVLSSFSV---GQLAGL 1274
+ S + + + L F Y ASF + L + +V +A +
Sbjct: 244 MVSASSISDPIIQLIASLALAFVLYA-----ASFP---SVMDTLTAGTITVVFSSMIALM 295
Query: 1275 APDTS-----------MAA-TAIPAVLQITKRKPLIDNVKGRKLERSKPLG-IELKMVTF 1321
P S MAA + A+L + + K D K R +ER+K G IE + VTF
Sbjct: 296 RPLKSLTNVNAQFQRGMAACQTLFAILDLEQEK---DEGK-RVIERAK--GDIEFRNVTF 349
Query: 1322 TYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLR 1381
TYP + EV L++ K+ G VALVG SGSGKST+ L+ RFYD ++G+++++G DLR
Sbjct: 350 TYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLR 408
Query: 1382 EINVKWLRKQTALVGQEPALFAGTIRDNIALG-NPKASWAEIEEAAEEAYIHKFISSLPQ 1440
+ + LR Q ALV Q LF TI +NIA + S +IEEAA AY FI+ +
Sbjct: 409 DYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDN 468
Query: 1441 GYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSK 1500
G +T +GE+GV LSGGQ+QRIAIARA+L+ S +L+LDEA+SALD ESE+ +Q AL ++ K
Sbjct: 469 GLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK 528
Query: 1501 RATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETLLASHLNGVYASLVR 1551
T++V+AHRLSTI +A+ I VV DG +VE G+H LLA NGVYA L +
Sbjct: 529 NRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLA--QNGVYAQLHK 577
|
Length = 582 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 287 bits (736), Expect = 6e-84
Identities = 155/437 (35%), Positives = 239/437 (54%), Gaps = 27/437 (6%)
Query: 485 YTVGFLRSWKVSLVVLSVTPLMMFCGMAYKAVYVGLTSKE--------EASYRRAGSVAE 536
+ + F SW++SL+++ + P++ ++ + + SK + + + + AE
Sbjct: 157 FIMMFYYSWQLSLILIVIAPIV--------SIAIRVVSKRFRNISKNMQNTMGQVTTSAE 208
Query: 537 QAISSIRTVFSFVAEDHFAVRYAGLLADSIPFGAKLGFAKGAGMGVIYLVTYATWALAF- 595
Q + + V F ++ R+ + G K+ A +I L+ A+ ALAF
Sbjct: 209 QMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISDPIIQLI--ASLALAFV 266
Query: 596 -WYGSILVARKELSGGAAIACFFGVNVGGRGLALSLSYFAQFAQGTVAATRVFEIIDRVP 654
+ S L+ G F + R L + AQF +G A +F I+D
Sbjct: 267 LYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQ 326
Query: 655 EIDPYNSEG-RKLSSVSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGG 713
E D EG R + G IEF+ VTF YP + E LR++N IP+ KT+ALVG SG G
Sbjct: 327 EKD----EGKRVIERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSG 381
Query: 714 KSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGK 773
KST+ L+ RFYD +G I LDGHDL+ + LR Q+ +V Q LF +I N+ +
Sbjct: 382 KSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYAR 441
Query: 774 ENATMKEAV-AACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRI 832
+E + A + A A FI+++ G DT +G+ G LSGGQ+QRIA+ARA+++D I
Sbjct: 442 TEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPI 501
Query: 833 LLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGN 892
L+LDE TSALD+ESE +Q A+D++ RT++VIAHRL+T++ A+ I+V++ G +VE G
Sbjct: 502 LILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGT 561
Query: 893 HRQLLERGGAYHDLVKL 909
H +LL + G Y L K+
Sbjct: 562 HAELLAQNGVYAQLHKM 578
|
Length = 582 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 286 bits (734), Expect = 1e-83
Identities = 140/356 (39%), Positives = 207/356 (58%), Gaps = 30/356 (8%)
Query: 591 WALA---------------FWYGSILVARKELSGGAAIACFFGVNVGGRGLALS-LSYFA 634
WALA G+ LV + +L G +A F VG L + L
Sbjct: 239 WALASVLNRAASTITMLAILVLGAALVQKGQLRVGEVVA--F---VGFATLLIGRLDQVV 293
Query: 635 QFAQGTV-AATRV---FEIIDRVPEI-DPYNSEGRKLSSVSGKIEFKGVTFAYPSRPETV 689
F AA ++ FE+ D VP++ DP + L V G +EF V+F+Y + + V
Sbjct: 294 AFINQVFMAAPKLEEFFEVEDAVPDVRDPPGA--IDLGRVKGAVEFDDVSFSYDNSRQGV 351
Query: 690 ILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRT 749
++ +T+A+VG +G GKST+ L++R +DP G I +DG D++++ LR
Sbjct: 352 --EDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRR 409
Query: 750 QIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRG 809
I +V Q+ LF SI +N+ +G+ +AT +E AA + A AH FI P GYDT VG+RG
Sbjct: 410 NIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERG 469
Query: 810 TQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHR 869
QLSGG++QR+A+ARA++KDP IL+LDE TSALD E+E+ V+ A+D++ GRTT +IAHR
Sbjct: 470 RQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHR 529
Query: 870 LATVKNANTIVVLDQGSVVEIGNHRQLLERGGAYHDLVKLASEAVSQPQSKQKDAK 925
L+TV+NA+ I+V D G VVE G+ +L+ RGG + L++ + KQ A+
Sbjct: 530 LSTVRNADRILVFDNGRVVESGSFDELVARGGRFAALLRAQGMLQEDERRKQPAAE 585
|
Length = 588 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 272 bits (696), Expect = 4e-83
Identities = 118/238 (49%), Positives = 160/238 (67%), Gaps = 3/238 (1%)
Query: 673 IEFKGVTFAYPSRP-ETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGL 731
I F+ V F Y +P VIL +++L I + + +VG SG GKST+ LI+RFY P G
Sbjct: 1 ITFEHVRFRY--KPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGR 58
Query: 732 ITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAH 791
+ +DGHDL WLR Q+G+V QE +LF SI +N+ + +M+ + A K A AH
Sbjct: 59 VLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAH 118
Query: 792 SFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQ 851
FISELP GYDT VG++G LSGGQ+QRIA+ARA+I +PRIL+ DE TSALD ESE +
Sbjct: 119 DFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIM 178
Query: 852 QAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLERGGAYHDLVKL 909
+ + I GRT I+IAHRL+TVKNA+ I+V+++G +VE G+H +LL G Y L +L
Sbjct: 179 RNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYLYQL 236
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 283 bits (727), Expect = 1e-81
Identities = 185/535 (34%), Positives = 266/535 (49%), Gaps = 33/535 (6%)
Query: 1037 SLALVGLGFGCI-IFMTGQQGFCGWAGTKLTMRVR-EL---LFRSILKQEPGWFDFEENS 1091
+L+++ L + IF G + LT R+ EL L+R +L G+F E
Sbjct: 177 TLSVLALAMLAVAIFEPALGGLRTYLFAHLTSRIDVELGARLYRHLLGLPLGYF--ESRR 234
Query: 1092 TGVLVSRL-SIDSISFRSVLGDRFSVLLMGLSSAAVGLGVSLVLNWRLTLVAAALTPFTL 1150
G V+R+ ++ I R+ L +++ L V L V + LT V
Sbjct: 235 VGDTVARVRELEQI--RNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGVVIGSLVC-- 290
Query: 1151 GASYLSLIINVGPKIDN------SSYAKASSIASGAVSNIRTVTTFSAQEQIINSFDKAL 1204
Y L + VGP + A A+S +V+ I T+ + + Q N +D+ L
Sbjct: 291 ---YALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQL 347
Query: 1205 SEPKKKSVKRSQILGLTLGFSQGAMYVAYTFT---LWFGAYLVKQGHASFGVVYKIFLIL 1261
+ S R LG G Q + LWFGA+LV G S G + ++
Sbjct: 348 AAYVAASF-RVTNLGNIAG--QAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLA 404
Query: 1262 VLSSFSVGQLAGLAPDTSMAATAIPAVLQITKRKPLIDNVKGRKLERSKPLGIELKMVTF 1321
+ V +LA L D A+ + I P G I + + F
Sbjct: 405 GRVTQPVLRLAQLWQDFQQTGIALERLGDILN-SPTEPRSAGLAALPELRGAITFENIRF 463
Query: 1322 TY-PSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDL 1380
Y P PEV L + L +K G + +VG SGSGKST+ L+QR Y P G+V+++GVDL
Sbjct: 464 RYAPDSPEV--LSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDL 521
Query: 1381 REINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQ 1440
+ WLR+Q +V QE LF+ +IRDNIAL NP A + + AA+ A H FIS LPQ
Sbjct: 522 AIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQ 581
Query: 1441 GYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSK 1500
GY T+VGE G LSGGQ+QRIAIARA++ R+L+ DEA+SALD ESE + +R++ +
Sbjct: 582 GYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICR 641
Query: 1501 RATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETLLASHLNGVYASLVRAETE 1555
T I++AHRLST+R + I V+ G + E G HE LLA G+YA L + ++
Sbjct: 642 GRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLAL--QGLYARLWQQQSG 694
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 274 bits (702), Expect = 2e-79
Identities = 163/460 (35%), Positives = 234/460 (50%), Gaps = 59/460 (12%)
Query: 1123 SAAVGLGV----SLVLNWRLTLVAAALTPFTLGASYLSLIINVGPKIDN------SSYAK 1172
+ V L V +L +NWRL+LV LG Y + V K + Y
Sbjct: 139 ATLVALVVLLPLALFMNWRLSLVL-----VVLGIVYTLITTLVMRKTKDGQAAVEEHYHD 193
Query: 1173 ASSIASGAVSNIRTVTTFS---AQEQIINSFDKALSEPKKKSVKRSQILGLTL-GFSQGA 1228
+ S A+ N+ V +++ A+ Q + L +Q+ L+ +
Sbjct: 194 LFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLA--------AQMPVLSWWALASVL 245
Query: 1229 MYVAYTFT----LWFGAYLVKQGHASFG--VVYKIFLILVLSSFSVGQLAGLAPDTSMAA 1282
A T T L GA LV++G G V + F L++ Q+ MAA
Sbjct: 246 NRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLD--QVVAFINQVFMAA 303
Query: 1283 -------TAIPAVLQITKRKPLID--NVKGRKLERSKPLGIELKMVTFTYP-SRPEVTVL 1332
AV + ID VKG +E V+F+Y SR V
Sbjct: 304 PKLEEFFEVEDAVPDVRDPPGAIDLGRVKGA---------VEFDDVSFSYDNSRQGVE-- 352
Query: 1333 KDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQT 1392
D + K G VA+VG +G+GKST+I L+QR +DP G+++I+G D+R + LR+
Sbjct: 353 -DVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNI 411
Query: 1393 ALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQ 1452
A+V Q+ LF +I DNI +G P A+ E+ AAE A H FI P GY+T VGE G Q
Sbjct: 412 AVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQ 471
Query: 1453 LSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLS 1512
LSGG++QR+AIARA+LK +L+LDEA+SALD+E+E V+ AL ++ K TT ++AHRLS
Sbjct: 472 LSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLS 531
Query: 1513 TIREANMIAVVRDGAVVEYGSHETLLASHLNGVYASLVRA 1552
T+R A+ I V +G VVE GS + L+A G +A+L+RA
Sbjct: 532 TVRNADRILVFDNGRVVESGSFDELVAR--GGRFAALLRA 569
|
Length = 588 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 259 bits (664), Expect = 5e-79
Identities = 110/219 (50%), Positives = 161/219 (73%)
Query: 669 VSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPT 728
+ G ++F+ VTFAYP+RP+T++L+ ++ + + ALVG SG GKSTV AL+E FY P
Sbjct: 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQ 67
Query: 729 KGLITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAA 788
G + LDG + + K+L +++ +VGQEP+LFA S+ +N+ G ++ + + A + A
Sbjct: 68 GGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKA 127
Query: 789 SAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESES 848
AHSFISEL GYDT+VG++G+QLSGGQKQR+A+ARA+I++P++L+LDE TSALD+ESE
Sbjct: 128 HAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQ 187
Query: 849 IVQQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSV 887
VQQA+ RT +VIAHRL+TV+ A+ I+VLD G +
Sbjct: 188 QVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 258 bits (660), Expect = 3e-78
Identities = 117/238 (49%), Positives = 156/238 (65%), Gaps = 5/238 (2%)
Query: 1314 IELKMVTFTY-PSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGK 1372
I + V F Y P P + L + L++K G +V +VG SGSGKST+ LIQRFY P G+
Sbjct: 1 ITFEHVRFRYKPDGPVI--LDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGR 58
Query: 1373 VMIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIH 1432
V+++G DL + WLR+Q +V QE LF +IRDNIAL +P S + EAA+ A H
Sbjct: 59 VLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAH 118
Query: 1433 KFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQ 1492
FIS LP+GY+T VGE G LSGGQ+QRIAIARA++ R+L+ DEA+SALD ESE +
Sbjct: 119 DFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIM 178
Query: 1493 DALRKVSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETLLASHLNGVYASLV 1550
+ + T I++AHRLST++ A+ I V+ G +VE GSH+ LLA NG+YA L
Sbjct: 179 RNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAE--NGLYAYLY 234
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 264 bits (677), Expect = 4e-77
Identities = 116/240 (48%), Positives = 163/240 (67%), Gaps = 2/240 (0%)
Query: 667 SSVSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYD 726
G + F V+FAY P IL ++ IP KT+A+VG SG GKST+ L+ RFYD
Sbjct: 257 PVRLGAVAFINVSFAY--DPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYD 314
Query: 727 PTKGLITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACK 786
G IT+DG D++ + + LR IG+V Q+ +LF +I N+ G+ +AT +E AA +
Sbjct: 315 VNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAE 374
Query: 787 AASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSES 846
AA H FI LP GYDT VG+RG +LSGG+KQR+A+AR ++K+P IL+LDE TSALD+ +
Sbjct: 375 AAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHT 434
Query: 847 ESIVQQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLERGGAYHDL 906
E +Q A+ ++S GRTT+VIAHRL+T+ +A+ I+VLD G +VE G H +LL GG Y ++
Sbjct: 435 EQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLAAGGLYAEM 494
|
Length = 497 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 259 bits (665), Expect = 2e-75
Identities = 143/388 (36%), Positives = 219/388 (56%), Gaps = 13/388 (3%)
Query: 1167 NSSYAKASSIASGAVSNIRTVTTFSAQEQIINSFDKALSEPKKKSVKRSQILGLTLGFSQ 1226
N++ + A++ A ++ N TV F +E +D AL +K ++K L + L F Q
Sbjct: 115 NNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVHVSLLV-LNFGQ 173
Query: 1227 GAMYVAY-TFTLWFGAYLVKQGHASFGVVYKIFLILVLSSFSVGQLAGLAPDTSM--AAT 1283
A++ + A V++G + G + + + +L S+ + A T
Sbjct: 174 TAIFSTGLRVMMTMSALGVEEGQLTVGDL--VNVNALLFQLSIPLNFLGFSYREIRQALT 231
Query: 1284 AIPAVLQITKRKPLIDN-VKGRKLERSKPLGIELKMVTFTY-PSRPEVTVLKDFCLKVKG 1341
+ + + + + + L + + V+F Y P RP +L +
Sbjct: 232 DMEKMFDLLDVEAEVSDAPDAPPLWPVRLGAVAFINVSFAYDPRRP---ILNGISFTIPL 288
Query: 1342 GSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQEPAL 1401
G VA+VG SG+GKST++ L+ RFYD N G + I+G D+R++ + LR+ +V Q+ L
Sbjct: 289 GKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVL 348
Query: 1402 FAGTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRI 1461
F TI NI G P A+ E+ AAE A IH FI SLP+GY+T VGE G++LSGG+KQR+
Sbjct: 349 FNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRV 408
Query: 1462 AIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIREANMIA 1521
AIAR ILK +L+LDEA+SALD +E+ +Q ALR+VS TT+V+AHRLSTI +A+ I
Sbjct: 409 AIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEII 468
Query: 1522 VVRDGAVVEYGSHETLLASHLNGVYASL 1549
V+ +G +VE G+HE LLA+ G+YA +
Sbjct: 469 VLDNGRIVERGTHEELLAAG--GLYAEM 494
|
Length = 497 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 246 bits (630), Expect = 5e-75
Identities = 90/213 (42%), Positives = 130/213 (61%), Gaps = 43/213 (20%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
IEFK V+F+YP RP+ V L+ ++L I + +A+VG SG GKST+ L+ R YDPT G I
Sbjct: 1 IEFKNVSFSYPGRPKPV-LKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEI 59
Query: 733 TLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHS 792
+DG DL+ L ++ LR I V Q+P LF+ +I EN+L
Sbjct: 60 LIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENIL---------------------- 97
Query: 793 FISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQ 852
SGGQ+QRIA+ARA+++DP IL+LDE TSALD E+E+++ +
Sbjct: 98 --------------------SGGQRQRIAIARALLRDPPILILDEATSALDPETEALILE 137
Query: 853 AIDKISVGRTTIVIAHRLATVKNANTIVVLDQG 885
A+ ++ G+T IVIAHRL+T+++A+ I+VLD G
Sbjct: 138 ALRALAKGKTVIVIAHRLSTIRDADRIIVLDDG 170
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 244 bits (624), Expect = 1e-73
Identities = 107/215 (49%), Positives = 153/215 (71%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
++ + VTF YP+RP+ VL+D + G + ALVG SGSGKSTV+ L++ FY P G+V
Sbjct: 12 VKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQV 71
Query: 1374 MIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHK 1433
+++G + + K+L + +LVGQEP LFA +++DNIA G S+ ++EAA++A+ H
Sbjct: 72 LLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHS 131
Query: 1434 FISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQD 1493
FIS L GY+T+VGE G QLSGGQKQR+AIARA+++ +VL+LDEA+SALD ESE+ VQ
Sbjct: 132 FISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQ 191
Query: 1494 ALRKVSKRATTIVVAHRLSTIREANMIAVVRDGAV 1528
AL +R T +V+AHRLST+ A+ I V+ G +
Sbjct: 192 ALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 258 bits (661), Expect = 1e-72
Identities = 156/475 (32%), Positives = 243/475 (51%), Gaps = 44/475 (9%)
Query: 1104 ISFRSVLGDRFSVLLMG-LSSAAVGLGVSLVL--------NWRLTLVAAALTPFTLGASY 1154
I+ R L D+ + L G L++ A+ V LV + LTL+ A + A
Sbjct: 253 IASRVQLNDQVAEFLSGQLATTALDA-VMLVFYALLMLLYDPVLTLIGIAFAAINVLALQ 311
Query: 1155 LSL--IINVGPKIDNSSYAKASSIASGAVSNIRTVTTFSAQE-----QIINSFDKALSEP 1207
L ++ ++ K + +A + +I T+ S E + K L+
Sbjct: 312 LVSRRRVDANRRL-QQDAGKLTGVAISGLQSIETLKA-SGLESDFFSRWAGYQAKLLNAQ 369
Query: 1208 KKKSVKRSQILGLTLGFSQGAMYVAYTFTLWFGAYLVKQGHASFG--VVYKIFLILVLSS 1265
++ V +QILG+ + L G V +G + G V ++ ++SS
Sbjct: 370 QELGV-LTQILGV---LPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQ----SLMSS 421
Query: 1266 FS--VGQLAGLA---PDTSMAATAIPAVLQITKRKPLIDNVKGRKL--ERSKPL--GIEL 1316
F V L G + + VL+ PL++ + E S L +EL
Sbjct: 422 FLEPVNNLVGFGGTLQELEGDLNRLDDVLR-NPVDPLLEEEEAPAAGSEPSPRLSGYVEL 480
Query: 1317 KMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIE 1376
+ +TF Y S E ++++F L ++ G VALVGGSGSGKST+ L+ Y P G+++ +
Sbjct: 481 RNITFGY-SPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFD 539
Query: 1377 GVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHKFIS 1436
G+ EI + L A+V Q+ LF GT+RDN+ L +P A++ A ++A IH I+
Sbjct: 540 GIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVIT 599
Query: 1437 SLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALR 1496
S P GY+ ++ E G LSGGQ+QR+ IARA+++ +L+LDEA+SALD E+EK + D LR
Sbjct: 600 SRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLR 659
Query: 1497 KVSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETLLASHLNGVYASLVR 1551
+ + T I+VAHRLSTIR+ + I V+ G VV+ G+HE L A + G YA L+R
Sbjct: 660 R--RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWA--VGGAYARLIR 710
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 238 bits (611), Expect = 2e-72
Identities = 99/213 (46%), Positives = 134/213 (62%), Gaps = 43/213 (20%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
IE K V+F+YP RP+ VLKD L +K G VA+VG SGSGKST++ L+ R YDP G++
Sbjct: 1 IEFKNVSFSYPGRPK-PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEI 59
Query: 1374 MIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHK 1433
+I+GVDLR+++++ LRK A V Q+P LF+GTIR+NI
Sbjct: 60 LIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI----------------------- 96
Query: 1434 FISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQD 1493
LSGGQ+QRIAIARA+L+ +L+LDEA+SALD E+E + +
Sbjct: 97 -------------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILE 137
Query: 1494 ALRKVSKRATTIVVAHRLSTIREANMIAVVRDG 1526
ALR ++K T IV+AHRLSTIR+A+ I V+ DG
Sbjct: 138 ALRALAKGKTVIVIAHRLSTIRDADRIIVLDDG 170
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 247 bits (634), Expect = 1e-70
Identities = 158/593 (26%), Positives = 274/593 (46%), Gaps = 61/593 (10%)
Query: 992 MIIFGFILGMHAGAILSIFPLILGQALQVYFDDTASTLRRDVRYLSLALVGLGF--GCII 1049
++ +L + +G + +L L + L + + L + L+ +
Sbjct: 1 WLVISALLAVLSGIAIIAQAALLADILTKLIEGQ---LFQSLLPLLILLLIALVLRAFLA 57
Query: 1050 FMTGQQGFCGWAGTKLTMRVRELLFRSILKQEPGWFDFEENSTGVLVSRLS--IDSISFR 1107
++ + G+ A K+ +R+L+ + K P + + G + I+
Sbjct: 58 WLRERLGY--RAAAKVRASLRQLVLDKLAKLGPAFIAQK--PAGSAATLALEGIEQ---- 109
Query: 1108 SVLGDRFS-----VLLMGLSSAAVGLGVSLVLNWR---LTLVAAALTPFTLGASYLSLII 1159
L ++ + L + + L NW + L+ A L P + +++
Sbjct: 110 --LEPYYARYLPQMFLSAIVPLLI-LIAIFFFNWAAALILLITAPLIPLFM------ILV 160
Query: 1160 NVGPKIDNSSYAKASSIASGA-VSNIR---TVTTFSAQEQIINSFDKALSEPKKK--SVK 1213
+ K + A + SG + +R T+ F E K + +K SV
Sbjct: 161 GLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVL 220
Query: 1214 RSQIL-GLTLGF--SQGAMYVAYTFTLWFGAYLVKQGHASFGVVYKIFLILVLSS-F--- 1266
R L L F VA ++ G L+ +G + +L+L+ F
Sbjct: 221 RIAFLSSAVLEFFAYLSIALVA----VYIGFRLLGEGDLTLFAG---LFVLILAPEFFQP 273
Query: 1267 --SVGQLAGLAPDTSMAATAIPAVLQITKRKPLIDNVKGRKLERSKPLGIELKMVTFTYP 1324
+G A AA + +L+ P + + ++ P+ I L+ ++F YP
Sbjct: 274 LRDLGSFFHAAAAGEAAADKLFTLLESPVATP--GSGEKAEVANEPPIEISLENLSFRYP 331
Query: 1325 SRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREIN 1384
L D L +K G + ALVG SG+GKST++ L+ F P QG++ + G+DLR+++
Sbjct: 332 DGK--PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLS 389
Query: 1385 VKWLRKQTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYET 1444
+ RKQ + V Q P LFAGTIR+NI L P AS EI A ++A + +F+ P G +T
Sbjct: 390 PEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDT 448
Query: 1445 QVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATT 1504
+GE G LSGGQ QR+A+ARA+L + +LLLDE ++ LD E+E+ + AL++++K+ T
Sbjct: 449 VIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTV 508
Query: 1505 IVVAHRLSTIREANMIAVVRDGAVVEYGSHETLLASHLNGVYASLVRAETEAN 1557
+V+ HRL +A+ I V+ +G +VE G+HE L G+YA+L++ +
Sbjct: 509 LVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEK--QGLYANLLKQQEGRR 559
|
Length = 559 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 259 bits (663), Expect = 8e-70
Identities = 232/974 (23%), Positives = 436/974 (44%), Gaps = 117/974 (12%)
Query: 638 QGTVAATRVFEIIDRVPEIDPYNSEGRKLSSVSG-KIEFKGVTFAYPSRPETVILRSLNL 696
Q +V+ R+ + E++P + E R + G I TF + +R L +
Sbjct: 602 QASVSLKRLRIFLSH-EELEPDSIERRTIKPGEGNSITVHNATFTW-ARDLPPTLNGITF 659
Query: 697 VIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIGMVGQ 756
IP +A+VG G GKS++ + + D +G + + G + V Q
Sbjct: 660 SIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG-------------SVAYVPQ 706
Query: 757 EPILFATSILENVLMGK--ENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSG 814
+ + S+ EN+L GK ++ + AC + LP G T++G++G LSG
Sbjct: 707 QAWIQNDSLRENILFGKALNEKYYQQVLEACALLPD---LEILPSGDRTEIGEKGVNLSG 763
Query: 815 GQKQRIALARAMIKDPRILLLDEPTSALDSE-SESIVQQAIDKISV--GRTTIVIAHRLA 871
GQKQR++LARA+ + I L D+P SA+D+ + I + I V +T I++ H ++
Sbjct: 764 GQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGIS 823
Query: 872 TVKNANTIVVLDQGSVVEIGNHRQLLERGGAYHDLVKLASEAVSQPQSKQKDAKRGIEFS 931
+ + I+V+ G + E+G++++LL+R GA+ + ++ + Q + +
Sbjct: 824 YLPQVDVIIVMSGGKISEMGSYQELLQRDGAFAEFLRTYAPD-EQQGHLEDSWTALVSGE 882
Query: 932 IYEKSVIE-------VSRSRYANEVSKSKYFKSMQ-------AEIQTVEE--------EQ 969
E +IE V + ++S S Q AE+Q E E
Sbjct: 883 GKEAKLIENGMLVTDVVGKQLQRQLSASSSDSGDQSRHHGSSAELQKAEAKEETWKLMEA 942
Query: 970 QKPRPRKFQLSEIWKLQRPEFAMIIFGFI---LGMHAGAILSIFPLILGQALQVYFDDTA 1026
K + + +LS W + I F I + H A+ S + L ++ DD
Sbjct: 943 DKAQTGQVELSVYWDYMKAIGLFITFLSIFLFVCNHVSALASNY------WLSLWTDDPM 996
Query: 1027 STLRRDVRYLSLALVG-LGF--GCIIFMTGQQGFCGWAGTKLTMRVRELLFRSILKQEPG 1083
++ L L++ G LG G +F G G + + + + L + L+ P
Sbjct: 997 VNGTQNNTSLRLSVYGALGILQGFAVFGYSMAVSIG--GIQASRVLHQDLLHNKLRS-PM 1053
Query: 1084 WFDFEENSTGVLVSRLSIDSISFRSVLGDRFSVLLMGLSSAAVGLGVSLVLNWRLTLVAA 1143
F FE +G LV+R S + + S++ V+ M + S +G +V+ + A
Sbjct: 1054 SF-FERTPSGNLVNRFSKELDTVDSMIPP---VIKMFMGSLFNVIGALIVILLATPIAAV 1109
Query: 1144 ALTP----FTLGASYLSLIINVGPKIDNSSYAKASSIASGAVSNIRTVTTFSAQEQIINS 1199
+ P + + ++++ S + S + + + + F QE+ I+
Sbjct: 1110 IIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQ 1169
Query: 1200 FDKALSEPKKKSVKRSQILGLTLGFSQGAMYVAYTFTLWFGAYLVKQGHASFGVVYKIFL 1259
D + E +Q A Y + W L G+ + +F
Sbjct: 1170 SDLKVDE------------------NQKAYYPSIVANRWLAVRLECVGNCIV-LFAALFA 1210
Query: 1260 ILVLSSFSVGQLAGLAPDTSMAATA-----IPAVLQITKRKPLIDNVKG-RKLERSKPLG 1313
++ S S G L GL+ S+ T + ++ ++ +K + E+ P
Sbjct: 1211 VISRHSLSAG-LVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQ 1269
Query: 1314 IELKMVTFTYPSRPEVT--------------VLKDFCLKVKGGSMVALVGGSGSGKSTVI 1359
I+ +P R V VL+ + + GG V +VG +G+GKS++
Sbjct: 1270 IQETAPPSGWPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLT 1329
Query: 1360 WLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKASW 1419
+ R + +G+++I+G+++ +I + LR + ++ Q+P LF+G++R N+ +P + +
Sbjct: 1330 LGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNL---DPFSQY 1386
Query: 1420 A--EIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLD 1477
+ E+ A E A++ F+S+LP + + E G LS GQ+Q + +ARA+L+ +++L+LD
Sbjct: 1387 SDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLD 1446
Query: 1478 EASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETL 1537
EA++A+DLE++ +Q +R + T + +AHRL+TI + + V+ G V E+G+ L
Sbjct: 1447 EATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNL 1506
Query: 1538 LASHLNGVYASLVR 1551
L G++ S+ +
Sbjct: 1507 LQQR--GIFYSMAK 1518
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 247 bits (633), Expect = 3e-69
Identities = 147/496 (29%), Positives = 245/496 (49%), Gaps = 38/496 (7%)
Query: 1061 AGTKLTMRVRELLFRSIL----KQEPGWFDFEENSTGVLVSRL-SIDSISFRSVLGDRFS 1115
AG K + + LF +L + P S G ++L +S+ R
Sbjct: 214 AGKKADLILSAKLFERVLGLRMEARPA-------SVGSFANQLREFESV--RDFFTSATL 264
Query: 1116 VLLMGLSSAAVGLGVSLVLNWRLTLVAAALTPFTLGASYLSLIINVGPKID---NSSYAK 1172
L+ L A + L V ++ L V P L L + + S +
Sbjct: 265 TALIDLPFALLFLLVIAIIGGPLVWVPLVAIPLILLPGLL-----LQRPLSRLAEESMRE 319
Query: 1173 AS---SIASGAVSNIRTVTTFSAQEQIINSFDKALSEPKKKSVKRSQILGLTLGFSQGAM 1229
++ ++ ++S + T+ +A+ + +++ ++ + +K + L F+Q
Sbjct: 320 SAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATNFAQFIQ 379
Query: 1230 YVAYTFTLWFGAYLVKQGHASFGVVYKIFLI--LVLSSFS---VGQLAGLAPDTSMAATA 1284
+ + G YL+ G + G LI ++LS + +GQLAGL A TA
Sbjct: 380 QLVSVAIVVVGVYLISDGELTMGG-----LIACVMLSGRALAPLGQLAGLLTRYQQAKTA 434
Query: 1285 IPAVLQITKRKPLIDNVKGRKLERSKPLG-IELKMVTFTYPSRPEVTVLKDFCLKVKGGS 1343
+ ++ ++ + P+ R L R + G IE + V+F YP + E L + L ++ G
Sbjct: 435 LQSLDELMQL-PVERPEGTRFLHRPRLQGEIEFRNVSFAYPGQ-ETPALDNVSLTIRPGE 492
Query: 1344 MVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQEPALFA 1403
VA++G GSGKST++ L+ Y P +G V+++GVD+R+I+ LR+ V Q+P LF
Sbjct: 493 KVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFY 552
Query: 1404 GTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAI 1463
GT+RDNIALG P A EI AAE A + +F+ P G + Q+GE G LSGGQ+Q +A+
Sbjct: 553 GTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVAL 612
Query: 1464 ARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIREANMIAVV 1523
ARA+L+ +LLLDE +SA+D SE+ +D L++ T ++V HR S + + I V+
Sbjct: 613 ARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVM 672
Query: 1524 RDGAVVEYGSHETLLA 1539
+G +V G + +L
Sbjct: 673 DNGRIVADGPKDQVLE 688
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 243 bits (622), Expect = 6e-69
Identities = 130/334 (38%), Positives = 208/334 (62%), Gaps = 21/334 (6%)
Query: 598 GSILVARKELSGGAAIACFFGVN--VGGRGLALSLSYFAQFAQGTVAA----TRVFEIID 651
G++LV + ELS G IA F G + GR L + F A F++ D
Sbjct: 261 GTVLVIKGELSVGEVIA-FIGFANLLIGR-----LDQMSGFITQIFEARAKLEDFFDLED 314
Query: 652 RVPEI-DPYNSEGRKLSSVSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTS 710
V + +P ++ +L +V G +EF+ +TF + + + V ++ + +T+A+VG +
Sbjct: 315 SVFQREEPADA--PELPNVKGAVEFRHITFEFANSSQGV--FDVSFEAKAGQTVAIVGPT 370
Query: 711 GGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVL 770
G GK+T+ L++R YDPT G I +DG D+ ++ + LR I V Q+ LF SI EN+
Sbjct: 371 GAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIR 430
Query: 771 MGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDP 830
+G+E AT +E A KAA+AH FI + GYDT VG+RG +LSGG++QR+A+ARA++K+
Sbjct: 431 LGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNA 490
Query: 831 RILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEI 890
IL+LDE TSALD E+E+ V+ AID + RTT +IAHRL+TV+NA+ ++ LDQG ++E
Sbjct: 491 PILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEK 550
Query: 891 GNHRQLLERGGAYHDLVK----LASEAVSQPQSK 920
G+ ++L+++ G ++ L++ L ++ ++P K
Sbjct: 551 GSFQELIQKDGRFYKLLRRSGLLTNQPATKPLRK 584
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 242 bits (620), Expect = 7e-69
Identities = 110/278 (39%), Positives = 163/278 (58%), Gaps = 3/278 (1%)
Query: 631 SYFAQFAQGTVAATRVFEIIDRVPEIDPYNSEGRKLSSVSGKIEFKGVTFAYPSRPETVI 690
S+F A G AA ++F +++ + + +I + ++F YP
Sbjct: 279 SFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPPIEISLENLSFRYPDGK--PA 336
Query: 691 LRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQ 750
L LNL I + + ALVG SG GKST+ L+ F PT+G I ++G DL+ L + R Q
Sbjct: 337 LSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQ 396
Query: 751 IGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGT 810
I V Q P LFA +I EN+L+ + +A+ +E +AA A F+ P G DT +G+ G
Sbjct: 397 ISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFV-PKPDGLDTVIGEGGA 455
Query: 811 QLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRL 870
LSGGQ QR+ALARA++ +LLLDEPT+ LD+E+E I+ QA+ +++ +T +VI HRL
Sbjct: 456 GLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRL 515
Query: 871 ATVKNANTIVVLDQGSVVEIGNHRQLLERGGAYHDLVK 908
+A+ IVVLD G +VE G H +L E+ G Y +L+K
Sbjct: 516 EDAADADRIVVLDNGRLVEQGTHEELSEKQGLYANLLK 553
|
Length = 559 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 246 bits (629), Expect = 1e-68
Identities = 143/513 (27%), Positives = 246/513 (47%), Gaps = 52/513 (10%)
Query: 422 RSAQRIRTKYLRAVLRQDIAFFDTEVSTSDIMHGISSDIAQIQEVMGEKVAHFAHNIFTF 481
+ A + ++L +LR + FF DI + + Q+ E + ++A A +
Sbjct: 224 KLAVGMSARFLWHILRLPVRFFAQR-HAGDIASRVQLN-DQVAEFLSGQLATTALDAVML 281
Query: 482 ICGYTVGFLRSWKVSLVVLSVTPLMMFCGMAYKAVYVGLTSKEEASYR------RAGSVA 535
+ + L ++L+ ++ + + A+ + + +A+ R + VA
Sbjct: 282 VFYALLMLLYDPVLTLIGIAFAAINVL------ALQLVSRRRVDANRRLQQDAGKLTGVA 335
Query: 536 EQAISSIRTVFSFVAEDHFAVRYAGLLADSIPFGAKLGFAKGAGMGVI-YLVTYATWALA 594
+ SI T+ + E F R+AG A + +LG +GV+ L+T AL
Sbjct: 336 ISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELG-VLTQILGVLPTLLTSLNSALI 394
Query: 595 FWYGSILVARKELSGGAAIA------CFFG-----VNVGGRGLALSLSYFAQFAQGT--- 640
G + V +L+ G +A F V GG Q +G
Sbjct: 395 LVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGT---------LQELEGDLNR 445
Query: 641 ---VAATRVFEIIDRVPEIDPYNSEGRKLSSVSGKIEFKGVTFAYPSRPETVILRSLNLV 697
V V +++ + +LS G +E + +TF Y S E ++ + +L
Sbjct: 446 LDDVLRNPVDPLLEEEEAPAAGSEPSPRLS---GYVELRNITFGY-SPLEPPLIENFSLT 501
Query: 698 IPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIGMVGQE 757
+ + +ALVG SG GKST+ L+ Y P G I DG + + + L + MV Q+
Sbjct: 502 LQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQD 561
Query: 758 PILFATSILENVLMGKENATMKEA--VAACKAASAHSFISELPLGYDTQVGDRGTQLSGG 815
LF ++ +N+ + + T+ +A V ACK A+ H I+ P GYD ++ + G LSGG
Sbjct: 562 IFLFEGTVRDNLTLW--DPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGG 619
Query: 816 QKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKN 875
Q+QR+ +ARA++++P IL+LDE TSALD E+E I+ + + G T I++AHRL+T+++
Sbjct: 620 QRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRD 677
Query: 876 ANTIVVLDQGSVVEIGNHRQLLERGGAYHDLVK 908
+ I+VL++G VV+ G H +L GGAY L++
Sbjct: 678 CDEIIVLERGKVVQRGTHEELWAVGGAYARLIR 710
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 224 bits (574), Expect = 6e-67
Identities = 86/216 (39%), Positives = 134/216 (62%), Gaps = 1/216 (0%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
IE + V+F+YP++ L + L ++ G VA++G GSGKST++ L+ Y P G V
Sbjct: 3 IEFRNVSFSYPNQEIPA-LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSV 61
Query: 1374 MIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHK 1433
+++G D+R+++ LR+ V Q+ LF GT+RDNI LG P A I AAE A +
Sbjct: 62 LLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTD 121
Query: 1434 FISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQD 1493
F++ P G + Q+GE G LSGGQ+Q +A+ARA+L +LLLDE +SA+D+ SE+ +++
Sbjct: 122 FVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKE 181
Query: 1494 ALRKVSKRATTIVVAHRLSTIREANMIAVVRDGAVV 1529
LR++ T I++ HR S + + I V+ G +V
Sbjct: 182 RLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIV 217
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 239 bits (613), Expect = 1e-66
Identities = 133/418 (31%), Positives = 212/418 (50%), Gaps = 18/418 (4%)
Query: 489 FLRSWKVSLVVLSVTPLMMFCGMAYKAVYVGL--TSKEEASYRRAGSVAEQAISSIRTVF 546
+ + V L PL++ G+ + L S E++ R A V +++S + T+
Sbjct: 281 AIIGGPLVWVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNA--VLVESLSGLETIK 338
Query: 547 SFVAEDHFAVRYAGLLADSIPFGAKLGFAKGAGMGVIYLVTYATWALAFWYGSILVARKE 606
+ AE F R+ +A G K F + G L++ E
Sbjct: 339 ALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATNFAQFIQQLVSVAIVVVGVYLISDGE 398
Query: 607 LSGGAAIACFFGVNVGGRGLA----LSLSYFAQFAQGTVAATRVFEIIDRVPEIDPYNSE 662
L+ G IAC V + GR LA L+ ++ Q A + E++ E
Sbjct: 399 LTMGGLIAC---VMLSGRALAPLGQLA-GLLTRYQQAKTALQSLDELMQLPVERPE---G 451
Query: 663 GRKLS--SVSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFAL 720
R L + G+IEF+ V+FAYP + ET L +++L I + +A++G G GKST+ L
Sbjct: 452 TRFLHRPRLQGEIEFRNVSFAYPGQ-ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKL 510
Query: 721 IERFYDPTKGLITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENATMKE 780
+ Y PT+G + LDG D++ + LR IG V Q+P LF ++ +N+ +G A +E
Sbjct: 511 LLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEE 570
Query: 781 AVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTS 840
+ A + A F+ P G D Q+G+RG LSGGQ+Q +ALARA+++DP ILLLDEPTS
Sbjct: 571 ILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTS 630
Query: 841 ALDSESESIVQQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLE 898
A+D+ SE + + + G+T +++ HR + + + I+V+D G +V G Q+LE
Sbjct: 631 AMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLE 688
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 234 bits (599), Expect = 3e-66
Identities = 102/255 (40%), Positives = 149/255 (58%), Gaps = 5/255 (1%)
Query: 628 LSLSYFAQFAQGTVAATRVFEIIDRVPEIDPYNSEGRKLSSVSGKIEFKGVTFAYPSRPE 687
L Y A+ A G AA +F ++D P + ++ + +EF GV+ AYP R
Sbjct: 280 LGAQYHAR-ADGVAAAEALFAVLDAAPRPLA--GKAPVTAAPAPSLEFSGVSVAYPGR-- 334
Query: 688 TVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWL 747
LR ++ +P + +ALVG SG GKST+ L+ F DPT+G I ++G L
Sbjct: 335 RPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSW 394
Query: 748 RTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGD 807
R QI V Q P LFA +I EN+ + + +A+ E A + A F++ LP G DT +G+
Sbjct: 395 RDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIREALERAGLDEFVAALPQGLDTPIGE 454
Query: 808 RGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIA 867
G LSGGQ QR+ALARA ++D +LLLDEPT+ LD+E+E+ V +A+ ++ GRT +++
Sbjct: 455 GGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQGRTVLLVT 514
Query: 868 HRLATVKNANTIVVL 882
HRLA A+ IVVL
Sbjct: 515 HRLALAALADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 229 bits (587), Expect = 2e-64
Identities = 102/340 (30%), Positives = 177/340 (52%), Gaps = 6/340 (1%)
Query: 570 AKLGFAKGAGMGVIYLVTYATWALAFWYGSILVARKELSGGAAIACFFGVNVGGRGLALS 629
A+ A + +I + L W + + A GAA+A L+
Sbjct: 239 ARFTGLSDAILLLIAGLLVI--GLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLA 296
Query: 630 LSYFAQFAQGTVAATRVFEIIDRVPEIDPYNSEGRKLSSVSGKIEFKGVTFAYPSRPETV 689
F Q +A R+ +I+D+ PE+ + + +E + V+F YP +T
Sbjct: 297 PGAFQHLGQVIASARRLNDILDQKPEVTFPDEQTATTGQA---LELRNVSFTYPG-QQTK 352
Query: 690 ILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRT 749
L++ NL + + +A++G SG GKST+ L+ +DP +G ITL+G ++ SL + LR
Sbjct: 353 ALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRE 412
Query: 750 QIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRG 809
I ++ Q LF+ ++ +N+ + +A+ +E AA + + P G +T +G+ G
Sbjct: 413 TISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGG 472
Query: 810 TQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHR 869
+LSGG+++R+ALARA++ D + LLDEPT LD +E V + + + G+T +++ HR
Sbjct: 473 RRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHR 532
Query: 870 LATVKNANTIVVLDQGSVVEIGNHRQLLERGGAYHDLVKL 909
L ++ + I+VLD G ++E G H +LL G Y L +L
Sbjct: 533 LRGLERMDRIIVLDNGKIIEEGTHAELLANNGRYKRLYQL 572
|
Length = 573 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 229 bits (585), Expect = 4e-64
Identities = 135/499 (27%), Positives = 237/499 (47%), Gaps = 34/499 (6%)
Query: 1067 MRVRELLFRSILKQEPGWFDFEENSTGVLVSRL-----SIDSISFRSVLGDRFSVLLMGL 1121
+RVR LF + P +G L++RL ++D++ R + ++ +
Sbjct: 93 LRVR--LFEKLEPLSPALLL--RYRSGDLLNRLVADVDALDNLYLRVI----APAVVALV 144
Query: 1122 SSAAVGLGVSLVLNWRLTLVAAALTPFTLGASYLSLII--NVGPKIDNSSYAKASSIASG 1179
A V +G+S L+ L L L G + A S
Sbjct: 145 LIAVVTIGLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTD- 203
Query: 1180 AVSNIRTVTTFSAQEQIINSFDKALSEPKKKSVKRSQILGL---TLGFSQGAMYVAYTFT 1236
V + F A++ + + + K K+++ GL L G + +
Sbjct: 204 WVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGLSDAILLLIAGLLVIG--LL 261
Query: 1237 LWFGAYLVKQGHASFGVVYKIFLILVLSSF-SVGQLAGLAP-DTSMAATAIPAVLQITKR 1294
LW A V G + + L+++ ++ + LA A + + I +
Sbjct: 262 LWMAA-QVGAGALAQPGAA-LALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQ 319
Query: 1295 KPLI--DNVKGRKLERSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSG 1352
KP + + + ++ +EL+ V+FTYP + LK+F L + G VA++G SG
Sbjct: 320 KPEVTFPDEQTATTGQA----LELRNVSFTYPG-QQTKALKNFNLTLAQGEKVAILGRSG 374
Query: 1353 SGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIAL 1412
SGKST++ L+ +DP QG + + GV++ ++ + LR+ +++ Q LF+GT+RDN+ L
Sbjct: 375 SGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRL 434
Query: 1413 GNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSR 1472
NP AS E+ A ++ + K + S P G T +GE G +LSGG+++R+A+ARA+L +
Sbjct: 435 ANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAP 494
Query: 1473 VLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYG 1532
+ LLDE + LD +E+ V L + ++ T ++V HRL + + I V+ +G ++E G
Sbjct: 495 LWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEG 554
Query: 1533 SHETLLASHLNGVYASLVR 1551
+H LLA+ NG Y L +
Sbjct: 555 THAELLAN--NGRYKRLYQ 571
|
Length = 573 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 227 bits (581), Expect = 5e-64
Identities = 100/254 (39%), Positives = 142/254 (55%), Gaps = 3/254 (1%)
Query: 1270 QLAGLAPDTSMAATAIPAVLQITKRKPLIDNVKGRKLERSKPLGIELKMVTFTYPSRPEV 1329
QL + A A+ + P K + + +E V+ YP R
Sbjct: 279 QLGAQYHARADGVAAAEALFAVLDAAPRPLAGK-APVTAAPAPSLEFSGVSVAYPGRRPA 337
Query: 1330 TVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLR 1389
L+ V G VALVG SG+GKST++ L+ F DP +G + + GV L + + R
Sbjct: 338 --LRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWR 395
Query: 1390 KQTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGES 1449
Q A V Q P LFAGTI +NI L P AS AEI EA E A + +F+++LPQG +T +GE
Sbjct: 396 DQIAWVPQHPFLFAGTIAENIRLARPDASDAEIREALERAGLDEFVAALPQGLDTPIGEG 455
Query: 1450 GVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAH 1509
G LSGGQ QR+A+ARA L+ + +LLLDE ++ LD E+E V +ALR +++ T ++V H
Sbjct: 456 GAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQGRTVLLVTH 515
Query: 1510 RLSTIREANMIAVV 1523
RL+ A+ I V+
Sbjct: 516 RLALAALADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 226 bits (579), Expect = 2e-63
Identities = 150/500 (30%), Positives = 262/500 (52%), Gaps = 45/500 (9%)
Query: 1061 AGTKLTMRVRELLFRSILKQEPGWFDFEENSTGVLVSRLS--IDSISFRSVLGDRFSV-- 1116
A +L + +RE +R + +Q P ++ + TG L++R + +D + F + G V
Sbjct: 63 ASYQLAVELREDFYRQLSRQHPEFY--LRHRTGDLMARATNDVDRVVFAAGEGVLTLVDS 120
Query: 1117 LLMGLSSAAVGLGVSLVLNWRLTLVAAALTPFTLGASYLSLIIN-VGPKIDN---SSYAK 1172
L+MG AV + +S ++W+LTL+A P ++++I G ++ + A
Sbjct: 121 LVMGC---AVLIVMSTQISWQLTLLALLPMPV------MAIMIKRYGDQLHERFKLAQAA 171
Query: 1173 ASSI---ASGAVSNIRTVTTFSAQEQIINSFDKALSEPKKKSVKRSQI-------LGLTL 1222
SS+ ++++IR + F +++ F + KK+++ ++I + + +
Sbjct: 172 FSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAI 231
Query: 1223 GFSQGAMYVAYTFTLWFGAYLVKQGHASFGVVYKIFLILVLSSFSVGQLA---GLAPDTS 1279
G + + G+++V G + G + + L L + + LA + S
Sbjct: 232 GMAN-------LLAIGGGSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGS 284
Query: 1280 MAATAIPAVLQITKRKPLIDNVKGRKLERSKPLGIELKMVTFTYPSRPEVTVLKDFCLKV 1339
A + I A+L P++ + E L + ++ FTYP + L++ +
Sbjct: 285 AAYSRIRAMLA---EAPVVKDGSEPVPEGRGELDVNIR--QFTYPQT-DHPALENVNFTL 338
Query: 1340 KGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQEP 1399
K G M+ + G +GSGKST++ LIQR +D ++G + + L ++ + R + A+V Q P
Sbjct: 339 KPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTP 398
Query: 1400 ALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQ 1459
LF+ T+ +NIALG P A+ EIE A A +H I LPQGY+T+VGE GV LSGGQKQ
Sbjct: 399 FLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQ 458
Query: 1460 RIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIREANM 1519
RI+IARA+L + +L+LD+A SA+D +E + LR+ + T I+ AHRLS + EA+
Sbjct: 459 RISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASE 518
Query: 1520 IAVVRDGAVVEYGSHETLLA 1539
I V++ G + + G+H+ L
Sbjct: 519 ILVMQHGHIAQRGNHDQLAQ 538
|
Length = 569 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 213 bits (544), Expect = 7e-63
Identities = 86/218 (39%), Positives = 138/218 (63%), Gaps = 1/218 (0%)
Query: 671 GKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKG 730
G+IEF+ V+F+YP++ E L +++L I + + +A++G G GKST+ L+ Y PT G
Sbjct: 1 GRIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSG 59
Query: 731 LITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASA 790
+ LDG D++ L LR IG V Q+ LF ++ +N+ +G A + + A + A
Sbjct: 60 SVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGV 119
Query: 791 HSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIV 850
F+++ P G D Q+G+RG LSGGQ+Q +ALARA++ DP ILLLDEPTSA+D SE +
Sbjct: 120 TDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERL 179
Query: 851 QQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVV 888
++ + ++ +T I+I HR + + + I+V+D G +V
Sbjct: 180 KERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIV 217
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 226 bits (579), Expect = 2e-62
Identities = 180/615 (29%), Positives = 291/615 (47%), Gaps = 84/615 (13%)
Query: 328 KPVGLFSLFKYSTKL---DMILVLL-GCIGALINGGALPWY-SYFFGNFVNKIANESSDP 382
K +GL L +++ + D++ +L G +G L+ G +P G + D
Sbjct: 119 KALGLRDLLRFALRGARRDLLAILAMGLLGTLL-GMLVPIATGILIGTAI-------PDA 170
Query: 383 DKTQMMKDAEKICLLMTVLAAIVMMGAYLEITCWRLVGERSAQRIRTKYLRAV------- 435
D++ +++ I L + LAA V A+ +L + R+ T+ ++
Sbjct: 171 DRSLLVQ----IALAL--LAAAVGAAAF------QLAQSLAVLRLETRMDASLQAAVWDR 218
Query: 436 -LRQDIAFFDTEVSTSDIMHGISSDIAQIQEVM-GEKVAHFAHNIFTFICGYTVGFLRSW 493
LR ++FF + ST D+ I+QI+ ++ G + IF + + F SW
Sbjct: 219 LLRLPVSFF-RQYSTGDLASRAMG-ISQIRRILSGSTLTTLLSGIFALL-NLGLMFYYSW 275
Query: 494 KVSLV----VLSVTPLMMFCGMAYKAVYVGLTSKEEASYRRAGSVAEQA------ISSIR 543
K++LV L + + G+ KE +G ++ IS +R
Sbjct: 276 KLALVAVALALVAIAVTLVLGLL-------QVRKERRLLELSGKISGLTVQLINGISKLR 328
Query: 544 TVFSFVAEDHFAVRYAGLLADSIPFGAKLGFAKG--AGMGVIYLVTYATWALAFWYGSIL 601
AE+ R+A L + + + V T A F L
Sbjct: 329 VA---GAENRAFARWAKLFSRQRKLELSAQRIENLLTVFNAVLPVL--TSAALFAAAISL 383
Query: 602 VARKELSGGAAIACF--FGVNVGG-RGLALSLSYFAQFAQGTVAATRVFE----IIDRVP 654
+ LS G+ +A FG G L+ +L +A ++E I++ +P
Sbjct: 384 LGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLI-------SILAVIPLWERAKPILEALP 436
Query: 655 EIDPYNSEGRKLSSVSGKIEFKGVTFAY-PSRPETVILRSLNLVIPSSKTLALVGTSGGG 713
E+D ++ KLS G IE VTF Y P P +IL ++L I + +A+VG SG G
Sbjct: 437 EVDEAKTDPGKLS---GAIEVDRVTFRYRPDGP--LILDDVSLQIEPGEFVAIVGPSGSG 491
Query: 714 KSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGK 773
KST+ L+ F P G + DG DL L V+ +R Q+G+V Q L + SI EN+ G
Sbjct: 492 KSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIA-GG 550
Query: 774 ENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRIL 833
T+ EA A + A I +P+G T + + G LSGGQ+QR+ +ARA+++ PRIL
Sbjct: 551 APLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRIL 610
Query: 834 LLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNH 893
L DE TSALD+ +++IV ++++++ V R IVIAHRL+T++NA+ I VLD G VV+ G +
Sbjct: 611 LFDEATSALDNRTQAIVSESLERLKVTR--IVIAHRLSTIRNADRIYVLDAGRVVQQGTY 668
Query: 894 RQLLERGGAYHDLVK 908
+L+ R G + L +
Sbjct: 669 DELMAREGLFAQLAR 683
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 223 bits (571), Expect = 4e-62
Identities = 138/441 (31%), Positives = 226/441 (51%), Gaps = 39/441 (8%)
Query: 1130 VSLVLNWRLTLVAAALTPFTLGASYLSLIINVGPKIDNSS------YAKASSIASGAVSN 1183
+ ++WRL++V LG Y+ + V + N Y S ++SN
Sbjct: 150 TAFAMDWRLSIVL-----MVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISN 204
Query: 1184 IRTVTTFS---AQEQIINSFDKALSEPKKKSVKRSQILGLTLGFSQGAMYVAYTFTLWFG 1240
+ V +++ A+ + F L + + L G ++ A ++ L G
Sbjct: 205 VSVVHSYNRIEAETSALKQFTNNLLSAQYPVL---DWWALASGLNRMASTISMMCILVIG 261
Query: 1241 AYLVKQGHASFGVVYKIFLILVLSSFSVGQLAGLAPDTSMAATAIPAVLQI---TKRK-- 1295
LV +G S G V L + Q++G A + + ++
Sbjct: 262 TVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREE 321
Query: 1296 ----PLIDNVKGRKLERSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGS 1351
P + NVKG +E + +TF + + + + D + K G VA+VG +
Sbjct: 322 PADAPELPNVKGA---------VEFRHITFEFANSSQG--VFDVSFEAKAGQTVAIVGPT 370
Query: 1352 GSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIA 1411
G+GK+T+I L+QR YDP G+++I+G+D+ + + LRK A V Q+ LF +IR+NI
Sbjct: 371 GAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIR 430
Query: 1412 LGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGS 1471
LG A+ E+ EAA+ A H FI GY+T VGE G +LSGG++QR+AIARAILK +
Sbjct: 431 LGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNA 490
Query: 1472 RVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIREANMIAVVRDGAVVEY 1531
+L+LDEA+SALD+E+E V++A+ + K TT ++AHRLST+R A+++ + G ++E
Sbjct: 491 PILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEK 550
Query: 1532 GSHETLLASHLNGVYASLVRA 1552
GS + L+ +G + L+R
Sbjct: 551 GSFQELIQK--DGRFYKLLRR 569
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 222 bits (567), Expect = 1e-61
Identities = 90/223 (40%), Positives = 144/223 (64%), Gaps = 5/223 (2%)
Query: 1334 DFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTA 1393
+F L G +ALVG SG+GK++++ + F P QG + I G++LRE++ + RK +
Sbjct: 370 NFTLP--AGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLS 426
Query: 1394 LVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQL 1453
VGQ P L GT+RDN+ LGNP AS ++++A E A++ +F+ LPQG +T +G+ L
Sbjct: 427 WVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGL 486
Query: 1454 SGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLST 1513
S GQ QR+A+ARA+L+ ++LLLDE +++LD SE+ V AL S+R TT++V H+L
Sbjct: 487 SVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLED 546
Query: 1514 IREANMIAVVRDGAVVEYGSHETLLASHLNGVYASLVRAETEA 1556
+ + + I V++DG +V+ G + L S G++A+L+ E
Sbjct: 547 LAQWDQIWVMQDGQIVQQGDYAEL--SQAGGLFATLLAHRQEE 587
|
Length = 588 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 223 bits (571), Expect = 2e-61
Identities = 149/512 (29%), Positives = 230/512 (44%), Gaps = 102/512 (19%)
Query: 1087 FEENSTGVLVSR-LSIDSISFRSVLGDRFSVLLMGLSSAAVGLGVSLVLNWRLTLVAAAL 1145
F + STG L SR + I I R +L L+ A + LG+ +W+L LVA AL
Sbjct: 227 FRQYSTGDLASRAMGISQI--RRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAVAL 284
Query: 1146 TPFTLGASYLSLIINVGPKIDNSSYAKASSIASGAVSNIRTVTTFSAQEQIINSFDKALS 1205
+ VT Q +
Sbjct: 285 ALVAIA-----------------------------------VTLVLGLLQ--------VR 301
Query: 1206 EPKKKSVKRSQILGLTLGFSQG------AMYVAYTFTLWFGAY-----------LVKQGH 1248
+ ++ +I GLT+ G A F W + ++
Sbjct: 302 KERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLL 361
Query: 1249 ASFGVVYKIFLILVLSSFSVGQLAGLAPDT--------------------SMAATAIPAV 1288
F V + L + ++ L G S +I AV
Sbjct: 362 TVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAV 421
Query: 1289 LQITKR-KPLIDNVKGRKLERSKP--L--GIELKMVTFTY-PSRPEVTVLKDFCLKVKGG 1342
+ + +R KP+++ + ++ P L IE+ VTF Y P P +L D L+++ G
Sbjct: 422 IPLWERAKPILEALPEVDEAKTDPGKLSGAIEVDRVTFRYRPDGP--LILDDVSLQIEPG 479
Query: 1343 SMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQEPALF 1402
VA+VG SGSGKST++ L+ F P G V +G DL ++V+ +R+Q +V Q L
Sbjct: 480 EFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLM 539
Query: 1403 AGTIRDNIALGNP---KASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQ 1459
+G+I +NIA G P +W EAA A + + I ++P G T + E G LSGGQ+Q
Sbjct: 540 SGSIFENIAGGAPLTLDEAW----EAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQ 595
Query: 1460 RIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIREANM 1519
R+ IARA+++ R+LL DEA+SALD ++ V ++L ++ + T IV+AHRLSTIR A+
Sbjct: 596 RLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADR 653
Query: 1520 IAVVRDGAVVEYGSHETLLASHLNGVYASLVR 1551
I V+ G VV+ G+++ L+A G++A L R
Sbjct: 654 IYVLDAGRVVQQGTYDELMAR--EGLFAQLAR 683
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 219 bits (559), Expect = 1e-60
Identities = 111/273 (40%), Positives = 167/273 (61%), Gaps = 9/273 (3%)
Query: 638 QGTVAATRVFEIIDRVPEIDPYNSEGRKLSSVSGKIEFKGVTFAYPSRPETVILRSLNLV 697
Q VA RVFE++D + Y ++ R L S G+I+ V+FAY R + ++L+++NL
Sbjct: 310 QAVVAGERVFELMDGPRQ--QYGNDDRPLQS--GRIDIDNVSFAY--RDDNLVLQNINLS 363
Query: 698 IPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIGMVGQE 757
+PS +ALVG +G GKST+ +L+ +Y T+G I LDG L SL LR + MV Q+
Sbjct: 364 VPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQD 423
Query: 758 PILFATSILENVLMGKENATMKEAV-AACKAASAHSFISELPLGYDTQVGDRGTQLSGGQ 816
P++ A + L NV +G++ +E V A + LP G T +G++G LS GQ
Sbjct: 424 PVVLADTFLANVTLGRD--ISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQ 481
Query: 817 KQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKNA 876
KQ +ALAR +++ P+IL+LDE T+ +DS +E +QQA+ + T +VIAHRL+T+ A
Sbjct: 482 KQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEA 541
Query: 877 NTIVVLDQGSVVEIGNHRQLLERGGAYHDLVKL 909
+TI+VL +G VE G H+QLL G Y + +L
Sbjct: 542 DTILVLHRGQAVEQGTHQQLLAAQGRYWQMYQL 574
|
Length = 592 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 205 bits (524), Expect = 5e-60
Identities = 85/221 (38%), Positives = 140/221 (63%), Gaps = 4/221 (1%)
Query: 1314 IELKMVTFTYPSRPE-VTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGK 1372
IE K V+ Y RP VLK+ +K G V +VG +GSGKS+++ + R + + G
Sbjct: 3 IEFKNVSLRY--RPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGS 60
Query: 1373 VMIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIH 1432
++I+GVD+ +I + LR + +++ Q+P LF+GTIR N+ + S E+ +A E +
Sbjct: 61 ILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFG-EYSDEELWQALERVGLK 119
Query: 1433 KFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQ 1492
+F+ SLP G +T V E G LS GQ+Q + +ARA+L+ S++L+LDEA++++D E++ +Q
Sbjct: 120 EFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQ 179
Query: 1493 DALRKVSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGS 1533
+R+ K T + +AHRL TI +++ I V+ G VVE+ S
Sbjct: 180 KTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 212 bits (542), Expect = 2e-58
Identities = 108/340 (31%), Positives = 186/340 (54%), Gaps = 12/340 (3%)
Query: 1215 SQILGLTLGFSQGAMY----VAYTFTLWFGAYLVKQGHASFGVVYKIFLILVLSSF-SVG 1269
+ LT G SQ M + LW A V G+A G + +F+ L++F ++
Sbjct: 238 RRQANLT-GLSQALMILANGLTVVLMLWLAAGGV-GGNAQPGALIALFVFAALAAFEALM 295
Query: 1270 QLAGLAPDTSMAATAIPAVLQITKRKPLIDNVKGRKLERSKPLGIELKMVTFTYPSRPEV 1329
+AG + + +IT++KP + + + L V+FTYP +P+
Sbjct: 296 PVAGAFQHLGQVIASARRINEITEQKPEVTFPTTSTAAADQVS-LTLNNVSFTYPDQPQ- 353
Query: 1330 TVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLR 1389
VLK L++K G VAL+G +G GKST++ L+ R +DP QG++++ G + + + LR
Sbjct: 354 PVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALR 413
Query: 1390 KQTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGES 1449
+ ++V Q LF+ T+RDN+ L P AS + E ++ + K + +G +GE
Sbjct: 414 QAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEG 472
Query: 1450 GVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAH 1509
G QLSGG+++R+ IARA+L + +LLLDE + LD E+E+ + + L + ++ T +++ H
Sbjct: 473 GRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITH 532
Query: 1510 RLSTIREANMIAVVRDGAVVEYGSHETLLASHLNGVYASL 1549
RL+ + + + I V+ +G ++E G+H+ LLA G Y L
Sbjct: 533 RLTGLEQFDRICVMDNGQIIEQGTHQELLAQQ--GRYYQL 570
|
Length = 574 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 213 bits (544), Expect = 1e-57
Identities = 152/542 (28%), Positives = 249/542 (45%), Gaps = 63/542 (11%)
Query: 394 ICLLMTVLAAIVMMGAYLEITCWRLVGERSAQRIRTKYLRAVLRQDIAFFDT----EVST 449
I L++ + ++ +Y++I ++G+R + I Y++ + ++FF T E+ +
Sbjct: 200 IGLIIAYIIQQIL--SYIQIFLLNVLGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVS 257
Query: 450 -----SDIMHGISSDIAQIQEVMGEKVAHFAHNIFTFICGYTVGFLRSWKVSLVVLSVTP 504
S I+ ++S I + M V I G + + L+ L P
Sbjct: 258 RFTDASSIIDALASTILSLFLDMWILV----------IVGLFLVRQNM-LLFLLSLLSIP 306
Query: 505 LMMFCGMAYKAVYVGLTSKEEASYRRAGSVAEQAISSIRTVFSFVAED----HFAVRYAG 560
+ + +K + L + S + ++ I T+ S +E +
Sbjct: 307 VYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGD 366
Query: 561 LLADSIPFGAKLGFAKGAGMGVIYLVTYATWALAFWYGSILVARKELSGGAAIACFFGVN 620
L S + K + A V L+ W G+ LV R +L+ G I
Sbjct: 367 YLNKSFKY-QKADQGQQAIKAVTKLILNVV---ILWTGAYLVMRGKLTLGQLIT------ 416
Query: 621 VGGRGLALSLSYF-----------AQFAQGTVAATRVFEIIDRVPEIDPYNSEGRKLSSV 669
LSYF + VA R+ E V +D +K + +
Sbjct: 417 -----FNALLSYFLTPLENIINLQPKLQAARVANNRLNE----VYLVDSEFINKKKRTEL 467
Query: 670 S---GKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYD 726
+ G I V+++Y IL ++L I + +VG SG GKST+ L+ F+
Sbjct: 468 NNLNGDIVINDVSYSYGYGSN--ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQ 525
Query: 727 PTKGLITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMG-KENATMKEAVAAC 785
G I L+G LK + LR I + QEP +F+ SILEN+L+G KEN + E AAC
Sbjct: 526 ARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAAC 585
Query: 786 KAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSE 845
+ A I +PLGY T++ + G+ +SGGQKQRIALARA++ D ++L+LDE TS LD+
Sbjct: 586 EIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTI 645
Query: 846 SESIVQQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLERGGAYHD 905
+E + + + +T I +AHRL+ K ++ I+VLD G ++E G+H +LL+R G Y
Sbjct: 646 TEKKIVNNLLNLQ-DKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDRNGFYAS 704
Query: 906 LV 907
L+
Sbjct: 705 LI 706
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 197 bits (504), Expect = 2e-57
Identities = 76/222 (34%), Positives = 132/222 (59%), Gaps = 2/222 (0%)
Query: 671 GKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKG 730
G IEFK V+ Y V L++++ I + + +VG +G GKS++ + R + + G
Sbjct: 1 GDIEFKNVSLRYRPNLPPV-LKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSG 59
Query: 731 LITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASA 790
I +DG D+ + + LR++I ++ Q+P+LF+ +I N L + +E A +
Sbjct: 60 SILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSN-LDPFGEYSDEELWQALERVGL 118
Query: 791 HSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIV 850
F+ LP G DT V + G LS GQ+Q + LARA+++ +IL+LDE T+++D E+++++
Sbjct: 119 KEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALI 178
Query: 851 QQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGN 892
Q+ I + T + IAHRL T+ +++ I+VLD+G VVE +
Sbjct: 179 QKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 209 bits (534), Expect = 3e-57
Identities = 78/221 (35%), Positives = 135/221 (61%), Gaps = 1/221 (0%)
Query: 694 LNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIGM 753
LN +P+ + +ALVG SG GK+++ + F P +G + ++G +L+ L + R +
Sbjct: 369 LNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSW 427
Query: 754 VGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLS 813
VGQ P L ++ +NVL+G +A+ ++ A + A F+ LP G DT +GD+ LS
Sbjct: 428 VGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLS 487
Query: 814 GGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATV 873
GQ QR+ALARA+++ ++LLLDEPT++LD+ SE +V QA++ S +TT+++ H+L +
Sbjct: 488 VGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDL 547
Query: 874 KNANTIVVLDQGSVVEIGNHRQLLERGGAYHDLVKLASEAV 914
+ I V+ G +V+ G++ +L + GG + L+ E +
Sbjct: 548 AQWDQIWVMQDGQIVQQGDYAELSQAGGLFATLLAHRQEEI 588
|
Length = 588 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 206 bits (527), Expect = 2e-56
Identities = 89/274 (32%), Positives = 155/274 (56%), Gaps = 4/274 (1%)
Query: 633 FAQFAQGTVAATRVFEIIDRVPEIDPYNSEGRKLSSVSGKIEFKGVTFAYPSRPETVILR 692
F Q +A R+ EI ++ PE+ + VS + V+F YP +P+ V L+
Sbjct: 301 FQHLGQVIASARRINEITEQKPEVTFPTTSTAAADQVS--LTLNNVSFTYPDQPQPV-LK 357
Query: 693 SLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIG 752
L+L I + + +AL+G +G GKST+ L+ R +DP +G I L+G + LR I
Sbjct: 358 GLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAIS 417
Query: 753 MVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQL 812
+V Q LF+ ++ +N+L+ NA+ + + + + E G + +G+ G QL
Sbjct: 418 VVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLL-EDDKGLNAWLGEGGRQL 476
Query: 813 SGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLAT 872
SGG+++R+ +ARA++ D +LLLDEPT LD+E+E + + + + + +T ++I HRL
Sbjct: 477 SGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTG 536
Query: 873 VKNANTIVVLDQGSVVEIGNHRQLLERGGAYHDL 906
++ + I V+D G ++E G H++LL + G Y+ L
Sbjct: 537 LEQFDRICVMDNGQIIEQGTHQELLAQQGRYYQL 570
|
Length = 574 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 206 bits (525), Expect = 3e-56
Identities = 150/530 (28%), Positives = 258/530 (48%), Gaps = 46/530 (8%)
Query: 398 MTVLAAIVMMGAYLEITCWR--LVGE--RSAQRIRTKYLRAVLRQDIAFFDTEVSTSDIM 453
M ++A +V YL WR L G + A +R + R + RQ F+ T D+M
Sbjct: 42 MVLIAVVV----YLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEFYLRH-RTGDLM 96
Query: 454 HGISSDIAQIQEVMGEKVAHFAHNIFTFICGYTVGFLR----SWKVSLVVLSVTPLMMFC 509
++D+ ++ GE V + + + G V + SW+++L+ L P+M
Sbjct: 97 ARATNDVDRVVFAAGEGVLTL---VDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIM 153
Query: 510 GMAYKAVYVGLTSKEEASYRRAGSVAEQAISSIRTVFSFVAEDHFAVRYAGLLADSIPFG 569
Y +A++ +++++SIR + +F ED + +A D+ G
Sbjct: 154 IKRYGDQLHERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDT---G 210
Query: 570 AKLGFAKGAGMGV----------IYLVTYATWALAFWYGSILVARKELSGGA--AIACFF 617
K M V IY+ LA GS +V L+ G + +
Sbjct: 211 KK-------NMRVARIDARFDPTIYIAIGMANLLAIGGGSWMVVNGSLTLGQLTSFVMYL 263
Query: 618 GVNVGGRGLALSLSYFAQFAQGTVAATRVFEIIDRVPEIDPYNSEGRK-LSSVSGKIEFK 676
G+ + LAL+ F +G+ A +R+ ++ P + +G + + G+++
Sbjct: 264 GLMIWPM-LALAW-MFNIVERGSAAYSRIRAMLAEAPVVK----DGSEPVPEGRGELDVN 317
Query: 677 GVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDG 736
F YP L ++N + + L + G +G GKST+ +LI+R +D ++G I
Sbjct: 318 IRQFTYPQTDHPA-LENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHD 376
Query: 737 HDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISE 796
L LQ+ R+++ +V Q P LF+ ++ N+ +G+ +AT +E + AS H I
Sbjct: 377 IPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILR 436
Query: 797 LPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDK 856
LP GYDT+VG+RG LSGGQKQRI++ARA++ + IL+LD+ SA+D +E + + +
Sbjct: 437 LPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQ 496
Query: 857 ISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLERGGAYHDL 906
GRT I+ AHRL+ + A+ I+V+ G + + GNH QL ++ G Y D+
Sbjct: 497 WGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQSGWYRDM 546
|
Length = 569 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 206 bits (525), Expect = 3e-55
Identities = 143/482 (29%), Positives = 238/482 (49%), Gaps = 36/482 (7%)
Query: 1087 FEENSTGVLVSRLS-----IDSISFRSVLGDRFSVLLMGLSSAAVGLGVSLVLNWRLTLV 1141
F TG +VSR + ID+++ S + F + + + VGL + N L L+
Sbjct: 247 FSTRRTGEIVSRFTDASSIIDALA--STILSLFLDMWILV---IVGL-FLVRQNMLLFLL 300
Query: 1142 AAALTPFTLGASYLSLIINVGPKID--NSSYAKASSIASGA----VSNIRTVTTFSAQEQ 1195
+ P Y +II + N +A+++ + + ++ I T+ + +++ +
Sbjct: 301 SLLSIPV-----YAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAE 355
Query: 1196 IINSFDKALSEPKKKSVKRSQILGLTLGFSQGAMYVAYTFTLWFGAYLVKQGHASFGVVY 1255
+ D + KS K + + LW GAYLV +G + G +
Sbjct: 356 RYSKIDSEFGDYLNKSFKYQKADQGQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLI 415
Query: 1256 KIFLILVLSSFSVGQLAGLAPDTSMAATAIPAVLQITKRKPLID---NVKGRKLERSKPL 1312
+L + + L P A A + ++ L+D K ++ E +
Sbjct: 416 TFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVY----LVDSEFINKKKRTELNNLN 471
Query: 1313 G-IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQG 1371
G I + V+++Y + L D L +K S +VG SGSGKST+ L+ F+ G
Sbjct: 472 GDIVINDVSYSYGYGSNI--LSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSG 529
Query: 1372 KVMIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGN-PKASWAEIEEAAEEAY 1430
++++ G L++I+ LR+ + QEP +F+G+I +N+ LG S EI A E A
Sbjct: 530 EILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAE 589
Query: 1431 IHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKH 1490
I I ++P GY+T++ E G +SGGQKQRIA+ARA+L S+VL+LDE++S LD +EK
Sbjct: 590 IKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKK 649
Query: 1491 VQDALRKVSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETLLASHLNGVYASLV 1550
+ + L + + T I VAHRLS ++++ I V+ G ++E GSH+ LL NG YASL+
Sbjct: 650 IVNNLLNLQDK-TIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDR--NGFYASLI 706
Query: 1551 RA 1552
Sbjct: 707 HN 708
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 205 bits (524), Expect = 2e-53
Identities = 216/907 (23%), Positives = 407/907 (44%), Gaps = 66/907 (7%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
I K F++ S+ L +NL IP +A+VG +G GK+++ + + L
Sbjct: 615 ISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAM---------LG 665
Query: 733 TLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHS 792
L + S+ + R + V Q +F ++ EN+L G + + + A A H
Sbjct: 666 ELSHAETSSVVI---RGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHD 722
Query: 793 FISELPLGYD-TQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSE-SESIV 850
+L G D T++G+RG +SGGQKQR+++ARA+ + I + D+P SALD+ + +
Sbjct: 723 L--DLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVF 780
Query: 851 QQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLERGGAYHDLVKLA 910
+ G+T +++ ++L + + I+++ +G + E G +L + G + L++ A
Sbjct: 781 DSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKSGSLFKKLMENA 840
Query: 911 SEAVSQPQSKQKD---AKRGIEFSIYEKSVIEVSRSRYANEVSKSKYFKSM---QAEIQT 964
+ + + D K G I+VS R + K +S+ Q E +T
Sbjct: 841 GKMDATQEVNTNDENILKLG------PTVTIDVS-ERNLGSTKQGKRGRSVLVKQEERET 893
Query: 965 VEEEQQKPRPRKFQLSEIWKLQRPEFAMIIFGFILGMHAGAILSIFPLILGQALQVYFDD 1024
+ +W MI+ L + + L ++ D
Sbjct: 894 GIISWNVLMRYNKAVGGLW------VVMILLVCYL------TTEVLRVSSSTWLSIWTDQ 941
Query: 1025 TASTLRRDVRYLSLALVGLGFGCIIFMTGQQGFCGWAGTKLTMRVRELLFRSILKQEPGW 1084
+ Y+ + + LGFG + + + R+ + + SIL+ P
Sbjct: 942 STPKSYSPGFYIVVYAL-LGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRA-PML 999
Query: 1085 FDFEENSTGVLVSRLSIDSISF-RSV--LGDRFSVLLMGLSSAAVGLG-VSLVLNWRLTL 1140
F F N TG +++R S D R+V L + F L L S +G VS + W
Sbjct: 1000 F-FHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVSTISLWA--- 1055
Query: 1141 VAAALTPFTLGASYLSLIINVGPKIDNSSYAKASSIASGAVSNIRTVTTFSAQEQIINSF 1200
+ L F Y ++D+ + + + A++ + ++ + A +++
Sbjct: 1056 IMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKIN 1115
Query: 1201 DKALSEPKKKSVKRSQILG-LTLGF-SQGAMYVAYTFTLWFGAYLVKQGHASFGVVYKIF 1258
K++ + ++ + LT+ + G + + T T + A F +
Sbjct: 1116 GKSMDNNIRFTLANTSSNRWLTIRLETLGGVMIWLTATFAVLRNGNAENQAGFASTMGLL 1175
Query: 1259 LILVLSSFSVGQLAGLAPDTSMAATAIPAVLQITKRKPL----IDNVKGRKLERSKPLGI 1314
L L+ ++ L+G+ S A ++ +V ++ L ++ + P
Sbjct: 1176 LSYTLNITTL--LSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRG 1233
Query: 1315 ELKMVTFTYPSRPEVT-VLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
+K RP + VL V V +VG +G+GKS+++ + R + +G++
Sbjct: 1234 SIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRI 1293
Query: 1374 MIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKASW--AEIEEAAEEAYI 1431
MI+ D+ + + LR+ +++ Q P LF+GT+R NI +P + A++ EA E A+I
Sbjct: 1294 MIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNI---DPFSEHNDADLWEALERAHI 1350
Query: 1432 HKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHV 1491
I P G + +V E G S GQ+Q +++ARA+L+ S++L+LDEA++++D+ ++ +
Sbjct: 1351 KDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLI 1410
Query: 1492 QDALRKVSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETLLASHLNGVYASLVR 1551
Q +R+ K T +V+AHRL+TI + + I V+ G V+EY S + LL S + +V
Sbjct: 1411 QRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELL-SRDTSAFFRMVH 1469
Query: 1552 AETEANA 1558
+ ANA
Sbjct: 1470 STGPANA 1476
|
Length = 1495 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 195 bits (498), Expect = 6e-53
Identities = 105/304 (34%), Positives = 155/304 (50%), Gaps = 12/304 (3%)
Query: 598 GSILVARKELSGGAAIACFFGVNVGGRGLA---LSLSYFAQFAQGTVAATRVFEIIDRVP 654
G+ L E++ G IA G + GR LA ++ + QF+ A R+ E++ P
Sbjct: 246 GAYLAIDGEITPGMMIA---GSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYP 302
Query: 655 EIDPYNSEGRKLSSVSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGK 714
L G + + VT P + LR ++ + + + LA++G SG GK
Sbjct: 303 S----RDPAMPLPEPEGHLSVENVTIVPPG-GKKPTLRGISFSLQAGEALAIIGPSGSGK 357
Query: 715 STVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKE 774
ST+ LI + PT G + LDG DLK + IG + Q+ LF ++ EN+ E
Sbjct: 358 STLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGE 417
Query: 775 NATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILL 834
NA ++ + A K A H I LP GYDT +G G LSGGQ+QRIALARA+ DP++++
Sbjct: 418 NADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVV 477
Query: 835 LDEPTSALDSESESIVQQAIDKISV-GRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNH 893
LDEP S LD E E + AI + G T +VI HR + + + I+VL G + G
Sbjct: 478 LDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGER 537
Query: 894 RQLL 897
++L
Sbjct: 538 DEVL 541
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 196 bits (500), Expect = 2e-50
Identities = 187/767 (24%), Positives = 320/767 (41%), Gaps = 156/767 (20%)
Query: 263 SQNGHDHGGHHRMSYKMDNLDDEFLHGHRGHDA-WLSTSHHYGGGDGRNNDPELVSPYNE 321
S N +D + S D+ RG+D ++ + + N +S N
Sbjct: 736 SNNDNDKDSDMKSSAYKDS--------ERGYDPDEMNGNSKHENESASNKKSCKMSDENA 787
Query: 322 DDAEVAKPVGLF-SLFK----------------YSTKLDMILVLLGCIGALINGGALPWY 364
+ + +LFK +S K D+ ++ L + A GG P +
Sbjct: 788 SENNAGGKLPFLRNLFKRKPKAPNNLRIVYREIFSYKKDVTIIALSILVA---GGLYPVF 844
Query: 365 SYFFGNFVNKIANESSDPDKTQMMKDAEKICLLMTVLAAIVMMGAYLEITCWRLVGERSA 424
+ + +V+ + D + ++ K L + V+A + + L+ ++GE+
Sbjct: 845 ALLYAKYVSTLF------DFANLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVE 898
Query: 425 QRIRTKYLRAVLRQDIAFFDTEVSTSDIMHG-ISSDIAQIQEVMGEKVAHFAHNIFTFIC 483
+ ++ + +L Q+I+FFD + ++ I+ D+ ++ + + F H I F+
Sbjct: 899 KTMKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFL- 957
Query: 484 GYTVGFLRSWKVSLVVLSVTPLMMFCGMAYKAVYVGLTSKEEASYRRAGS---------- 533
V + S+ +V +V F M A+ LT+ ++ +
Sbjct: 958 ---VSMVMSFYFCPIVAAVLTGTYFIFMRVFAIRARLTANKDVEKKEINQPGTVFAYNSD 1014
Query: 534 ---------VAEQAISSIRTVFSFVAEDHF------AVRYA--GLLADSIPFGAKLGFAK 576
+ ++A ++ TV + ED+F A+ Y+ G ++ GF++
Sbjct: 1015 DEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQ 1074
Query: 577 GAGMGVIYLVTYATWALAFWYGSILVARKELSGGAAIACFFGVNVGGRGLALSLSYFAQF 636
A + + + A+W+GS L+ R + + F G +S
Sbjct: 1075 SAQLFIN--------SFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDS 1126
Query: 637 AQGTVAATRVFEIIDRVPEIDPYNSEGRKLSS---VSGKIE----------------FKG 677
++ + + +I R ID ++ G ++ + + GKIE +K
Sbjct: 1127 ENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKD 1186
Query: 678 VTFAYPSRPETVIL---------------------------------------------R 692
+TF+ S+ T I+
Sbjct: 1187 LTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDE 1246
Query: 693 SLNLVIPSSKTLALVGTSGGGK-STVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQI 751
N+ + + +L G G+ STVF G I LDG D+ +K LR
Sbjct: 1247 EQNVGMKNVNEFSLTKEGGSGEDSTVFK--------NSGKILLDGVDICDYNLKDLRNLF 1298
Query: 752 GMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQ 811
+V QEP+LF SI EN+ GKE+AT ++ ACK A+ FI LP YDT VG G
Sbjct: 1299 SIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKS 1358
Query: 812 LSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKI--SVGRTTIVIAHR 869
LSGGQKQRIA+ARA++++P+ILLLDE TS+LDS SE ++++ I I +T I IAHR
Sbjct: 1359 LSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHR 1418
Query: 870 LATVKNANTIVVLDQ----GSVVEI-GNHRQLLE-RGGAYHDLVKLA 910
+A++K ++ IVV + GS V+ G H +LL + G Y VKLA
Sbjct: 1419 IASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQDGVYKKYVKLA 1465
|
Length = 1466 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 186 bits (475), Expect = 9e-50
Identities = 106/298 (35%), Positives = 166/298 (55%), Gaps = 20/298 (6%)
Query: 598 GSILVARKELSGGAAIACFFGVNVGGRGLA---LSLSYFAQFAQGTVAATRVFEIIDRVP 654
G+ LV + E++ G IA G + GR LA L+++ + QF + R+ E++ +P
Sbjct: 264 GAWLVIKGEITPGMMIA---GSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELP 320
Query: 655 EIDPYNSEGRKLSSVSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGK 714
+E L + G + + +T A P + + IL+ ++ + + + L ++G SG GK
Sbjct: 321 A----AAERMPLPAPQGALSVERLTAAPPGQ-KKPILKGISFALQAGEALGIIGPSGSGK 375
Query: 715 STVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQ----IGMVGQEPILFATSILENVL 770
ST+ L+ + PT G + LDG DL+ W R Q IG + Q+ LF +I EN+
Sbjct: 376 STLARLLVGIWPPTSGSVRLDGADLRQ----WDREQLGRHIGYLPQDVELFDGTIAENIA 431
Query: 771 MGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDP 830
E A ++ + A + A H I LP GYDT++G+ G LSGGQ+QRIALARA+ DP
Sbjct: 432 RFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDP 491
Query: 831 RILLLDEPTSALDSESESIVQQAIDKI-SVGRTTIVIAHRLATVKNANTIVVLDQGSV 887
+++LDEP S LDSE E+ + AI + G T +VIAHR + + + + I+VL G +
Sbjct: 492 FLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRI 549
|
Length = 580 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 187 bits (476), Expect = 1e-49
Identities = 92/248 (37%), Positives = 146/248 (58%), Gaps = 6/248 (2%)
Query: 1297 LIDNVKGRKLERSKPLG---IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGS 1353
L+D + + +PL I++ V+F Y R + VL++ L V VALVG +GS
Sbjct: 321 LMDGPRQQYGNDDRPLQSGRIDIDNVSFAY--RDDNLVLQNINLSVPSRGFVALVGHTGS 378
Query: 1354 GKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALG 1413
GKST+ L+ +Y +G++ ++G L ++ LR+ A+V Q+P + A T N+ LG
Sbjct: 379 GKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLG 438
Query: 1414 NPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRV 1473
S ++ +A E + + SLP G T +GE G LS GQKQ +A+AR +++ ++
Sbjct: 439 RD-ISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQI 497
Query: 1474 LLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGS 1533
L+LDEA++ +D +E+ +Q AL V + T +V+AHRLSTI EA+ I V+ G VE G+
Sbjct: 498 LILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGT 557
Query: 1534 HETLLASH 1541
H+ LLA+
Sbjct: 558 HQQLLAAQ 565
|
Length = 592 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 182 bits (464), Expect = 1e-48
Identities = 111/468 (23%), Positives = 194/468 (41%), Gaps = 48/468 (10%)
Query: 1067 MRVRELLFRSILKQEPGWFDFEENSTGVLVSRLSIDSISFRSVLGDRFSVLLMGLSSAAV 1126
+RVR ++ + +Q G L+ RL D + + + V++ + V
Sbjct: 88 LRVR--VYERLARQALAGR--RRLRRGDLLGRLGADVDALQDLY---VRVIVPAGVALVV 140
Query: 1127 GLGVSLVLNWRLTLVAAALTPFTLGASYLSLIINVGPKIDNSSYAKASSIASGAVSNIR- 1185
G + A L A+ L L V P + + A + +
Sbjct: 141 GAAAVAAIAVLSVPAALIL------AAGLLLAGFVAPLVSLRAARAAEQALARLRGELAA 194
Query: 1186 ----------TVTTFSAQEQIINSFDKALSEPKKKSVKRSQILGLTLGFSQGAMYVAYTF 1235
+ A + ++A E + + + L + A +A
Sbjct: 195 QLTDALDGAAELVASGALPAALAQVEEADRELTRAERRAAAATALGAALTLLAAGLAVLG 254
Query: 1236 TLWFGAYLVKQGHASFGVVYKIFLILVLSSFSVGQLAGLAPDTSMAATAIPAVLQITKRK 1295
LW G V G + V + ++L L++F A AA + V +R
Sbjct: 255 ALWAGGPAVADGRLA-PVTLAVLVLLPLAAFEA-----FAA-LPAAAQQLTRVRAAAER- 306
Query: 1296 PLIDNVKGRKLER------------SKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGS 1343
I V +EL+ ++ YP P V L L + G
Sbjct: 307 --IVEVLDAAGPVAEGSAPAAGAVGLGKPTLELRDLSAGYPGAPPV--LDGVSLDLPPGE 362
Query: 1344 MVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQEPALFA 1403
VA++G SGSGKST++ + DP QG+V ++GV + ++ +R++ ++ Q+ LF
Sbjct: 363 RVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRRVSVCAQDAHLFD 422
Query: 1404 GTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAI 1463
T+R+N+ L P A+ E+ A E + ++ +LP G +T +GE G +LSGG++QR+A+
Sbjct: 423 TTVRENLRLARPDATDEELWAALERVGLADWLRALPDGLDTVLGEGGARLSGGERQRLAL 482
Query: 1464 ARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRL 1511
ARA+L + +LLLDE + LD E+ + + L T +++ H L
Sbjct: 483 ARALLADAPILLLDEPTEHLDAETADELLEDLLAALSGRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 179 bits (457), Expect = 9e-48
Identities = 131/491 (26%), Positives = 211/491 (42%), Gaps = 61/491 (12%)
Query: 410 YLEITCWRLVGE----RSAQRIRTKYLRAVLRQDIAFFDTEVSTSDIMHGISSDIAQIQE 465
YLE RLVG RS +R + + RQ + D++ + +D+ +Q+
Sbjct: 71 YLE----RLVGHDAALRSLGALRVRVYERLARQA-LAGRRRLRRGDLLGRLGADVDALQD 125
Query: 466 VMGEKVAHFAHNIFTFICGYTVGFLRSWKVSLVVLSVTPLMMFCGMAYKAVYVGLTSKEE 525
+ + I VG + V+ L++ G+ L S
Sbjct: 126 L-------YVRVIVPAGVALVVGAA-AVAAIAVLSVPAALILAAGLLLAGFVAPLVS--- 174
Query: 526 ASYRRAGSVAEQAI--------SSIRTVFSFVAEDHFAVRYAGLLADSIPFGAKLGFAK- 576
RA AEQA+ + + AE + LA +L A+
Sbjct: 175 ---LRAARAAEQALARLRGELAAQLTDALDGAAELVASGALPAALAQVEEADRELTRAER 231
Query: 577 ------GAGMGVIYLVTYATWALAFWYGSILVARKELSGGAAIACFFGVNVGGRGLALSL 630
G + L A W G VA L+ +A + L L
Sbjct: 232 RAAAATALGAALTLLAAGLAVLGALWAGGPAVADGRLAP-VTLAVL---------VLLPL 281
Query: 631 SYFAQFAQGTVAA---TRVFEIIDRVPEIDPYNSEG------RKLSSVSGK--IEFKGVT 679
+ F FA AA TRV +R+ E+ + GK +E + ++
Sbjct: 282 AAFEAFAALPAAAQQLTRVRAAAERIVEVLDAAGPVAEGSAPAAGAVGLGKPTLELRDLS 341
Query: 680 FAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDL 739
YP P +L ++L +P + +A++G SG GKST+ A + DP +G +TLDG +
Sbjct: 342 AGYPGAPP--VLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPV 399
Query: 740 KSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPL 799
SL +R ++ + Q+ LF T++ EN+ + + +AT +E AA + ++ LP
Sbjct: 400 SSLDQDEVRRRVSVCAQDAHLFDTTVRENLRLARPDATDEELWAALERVGLADWLRALPD 459
Query: 800 GYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISV 859
G DT +G+ G +LSGG++QR+ALARA++ D ILLLDEPT LD+E+ + + +
Sbjct: 460 GLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLAALS 519
Query: 860 GRTTIVIAHRL 870
GRT ++I H L
Sbjct: 520 GRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 168 bits (428), Expect = 4e-47
Identities = 82/242 (33%), Positives = 119/242 (49%), Gaps = 33/242 (13%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYD-----P 727
IE + + Y + L+ ++L IP + AL+G SG GKST+ L+ R D P
Sbjct: 1 IELRDLNVYYGDK---HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAP 57
Query: 728 TKGLITLDGHDLKSLQ--VKWLRTQIGMVGQEPILFATSILENVLMG------KENATMK 779
+G + LDG D+ L V LR ++GMV Q+P F SI +NV G K +
Sbjct: 58 DEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELD 117
Query: 780 EAVAAC--KAASAHSFISELPLGYDTQVGDR--GTQLSGGQKQRIALARAMIKDPRILLL 835
E V KA +V DR LSGGQ+QR+ LARA+ +P +LLL
Sbjct: 118 ERVEEALRKA------------ALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLL 165
Query: 836 DEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHR 894
DEPTSALD S + +++ I ++ T +++ H + A+ L G +VE G
Sbjct: 166 DEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTE 225
Query: 895 QL 896
Q+
Sbjct: 226 QI 227
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 166 bits (423), Expect = 7e-46
Identities = 92/282 (32%), Positives = 143/282 (50%), Gaps = 11/282 (3%)
Query: 993 IIFGFILGMHAGAILSIFPLILGQALQVYFDDTASTLRRDVRYLSLALVGLGFGCIIFMT 1052
++ +L + AGA +FPL+LG+ L D +SLA++ + G + +
Sbjct: 1 LLIAILLLILAGATALVFPLLLGRFLDSLID---GNGDERSSLISLAILLIAVGVLQGLL 57
Query: 1053 GQQGFCGWAGTKLTMRVRELLFRSILKQEPGWFD--FEENSTGVLVSRLSIDSISFRSVL 1110
Q F + G +L R+R+ LFR++L+Q G F+ NS G L SRL+ D R L
Sbjct: 58 LQGSF--YLGERLGQRIRKRLFRALLRQILGLPMSFFDTNSVGELTSRLTNDVSKIRDGL 115
Query: 1111 GDRFSVLLMGLSSAAVGLGVSLVLNWRLTLVAAALTP-FTLGASYLSLIINVGPKIDNSS 1169
GD+ + L++ G V W+LTLV A+ P L ++ L+ + + + +
Sbjct: 116 GDKLGLFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVLAKKLRKLNRKEQKA 175
Query: 1170 YAKASSIASGAVSNIRTVTTFSAQEQIINSFDKALSEPKKKSVKRSQILGLTLGFSQGAM 1229
YAKA S+A ++S IRTV F +E + +DKAL + +K +K++ GL+ G +Q
Sbjct: 176 YAKAGSVAEESLSGIRTVKAFGREEYELERYDKALEDAEKAGIKKAITAGLSFGITQLIS 235
Query: 1230 YVAYTFTLWFGAYLVKQGHASFGVVYKIFLILVLSSFSVGQL 1271
Y++Y LWFGAYLV G V +F L L G L
Sbjct: 236 YLSYALALWFGAYLVISG---GLSVGTVFAFLSLGLQLSGPL 274
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 172 bits (437), Expect = 7e-45
Identities = 102/328 (31%), Positives = 168/328 (51%), Gaps = 23/328 (7%)
Query: 1240 GAYLVKQGHASFGVVYKIFLILVLSSFSVGQLAGLAP-DTSMA-----ATAIPAVLQITK 1293
GA+LV +G + G++ + S G+ LAP D ++A A + ++ +
Sbjct: 264 GAWLVIKGEITPGMM-------IAGSILSGRA--LAPIDLAIANWKQFVAARQSYKRLNE 314
Query: 1294 RKPLIDNVKGR--KLERSKPLG-IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGG 1350
L+ + ++ P G + ++ +T P + + LK ++ G + ++G
Sbjct: 315 ---LLAELPAAAERMPLPAPQGALSVERLTAAPPGQKKPI-LKGISFALQAGEALGIIGP 370
Query: 1351 SGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNI 1410
SGSGKST+ L+ + P G V ++G DLR+ + + L + + Q+ LF GTI +NI
Sbjct: 371 SGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENI 430
Query: 1411 ALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKG 1470
A +A ++ EAA A +H+ I LPQGY+T++GE G LSGGQ+QRIA+ARA+
Sbjct: 431 ARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGD 490
Query: 1471 SRVLLLDEASSALDLESEKHVQDALRKVSKR-ATTIVVAHRLSTIREANMIAVVRDGAVV 1529
+++LDE +S LD E E + A+ R T +V+AHR S + + I V++DG +
Sbjct: 491 PFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIA 550
Query: 1530 EYGSHETLLASHLNGVYASLVRAETEAN 1557
+G E +LA L A
Sbjct: 551 AFGPREEVLAKVLRPPPRQAKPGTVVAP 578
|
Length = 580 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 160 bits (406), Expect = 7e-45
Identities = 78/216 (36%), Positives = 109/216 (50%), Gaps = 44/216 (20%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
+E + V+F YP E +LR+++ I ++LA++G SG GKST+ LI PT G +
Sbjct: 1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRV 59
Query: 733 TLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHS 792
LDG D+ L +G + Q+ LF+ SI EN+L
Sbjct: 60 RLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENIL---------------------- 97
Query: 793 FISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQ 852
SGGQ+QR+ LARA+ +PRIL+LDEP S LD E E + Q
Sbjct: 98 --------------------SGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQ 137
Query: 853 AIDKISV-GRTTIVIAHRLATVKNANTIVVLDQGSV 887
AI + G T IVIAHR T+ +A+ I+VL+ G V
Sbjct: 138 AIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 170 bits (432), Expect = 2e-44
Identities = 103/327 (31%), Positives = 171/327 (52%), Gaps = 23/327 (7%)
Query: 1223 GFSQGAMYVAYTFTLWFGAYLVKQGHASFGVVYKIFLILVLSSFSVGQLAGLAP-DTSMA 1281
S+ V + L GAYL G + G++ + S VG+ LAP D ++
Sbjct: 229 NLSKYFRIVLQSLVLGLGAYLAIDGEITPGMM-------IAGSILVGR--ALAPIDGAIG 279
Query: 1282 -----ATAIPAVLQITKRKPLIDNVKGR--KLERSKPLG-IELKMVTFTYPSRPEVTVLK 1333
+ A A ++ + L+ N R + +P G + ++ VT P + L+
Sbjct: 280 GWKQFSGARQAYKRLNE---LLANYPSRDPAMPLPEPEGHLSVENVTIVPPG-GKKPTLR 335
Query: 1334 DFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTA 1393
++ G +A++G SGSGKST+ LI + P G V ++G DL++ + + K
Sbjct: 336 GISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIG 395
Query: 1394 LVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQL 1453
+ Q+ LF GT+ +NIA A +I EAA+ A +H+ I LP GY+T +G G L
Sbjct: 396 YLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATL 455
Query: 1454 SGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKR-ATTIVVAHRLS 1512
SGGQ+QRIA+ARA+ ++++LDE +S LD E E+ + +A++ + R T +V+ HR S
Sbjct: 456 SGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPS 515
Query: 1513 TIREANMIAVVRDGAVVEYGSHETLLA 1539
+ + I V++DG + +G + +LA
Sbjct: 516 LLGCVDKILVLQDGRIARFGERDEVLA 542
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 157 bits (400), Expect = 8e-43
Identities = 78/273 (28%), Positives = 140/273 (51%), Gaps = 12/273 (4%)
Query: 347 VLLGCIGALINGGALPWYSYFFGNFVNKIANESSDPDKTQMMKDAEKICLLMTVLAAIVM 406
+L+ + ++ G + G F++ + + + D + I L + ++A V+
Sbjct: 1 LLIAILLLILAGATALVFPLLLGRFLDSLIDGNGDER-------SSLISLAILLIAVGVL 53
Query: 407 MGAYLEITCWRLVGERSAQRIRTKYLRAVLRQDIAFFDT---EVSTSDIMHGISSDIAQI 463
G L +GER QRIR + RA+LRQ + + S ++ +++D+++I
Sbjct: 54 QGLLL--QGSFYLGERLGQRIRKRLFRALLRQILGLPMSFFDTNSVGELTSRLTNDVSKI 111
Query: 464 QEVMGEKVAHFAHNIFTFICGYTVGFLRSWKVSLVVLSVTPLMMFCGMAYKAVYVGLTSK 523
++ +G+K+ F ++ T + G+ V F WK++LV+L++ PL++ L K
Sbjct: 112 RDGLGDKLGLFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVLAKKLRKLNRK 171
Query: 524 EEASYRRAGSVAEQAISSIRTVFSFVAEDHFAVRYAGLLADSIPFGAKLGFAKGAGMGVI 583
E+ +Y +AGSVAE+++S IRTV +F E++ RY L D+ G K G G+
Sbjct: 172 EQKAYAKAGSVAEESLSGIRTVKAFGREEYELERYDKALEDAEKAGIKKAITAGLSFGIT 231
Query: 584 YLVTYATWALAFWYGSILVARKELSGGAAIACF 616
L++Y ++ALA W+G+ LV LS G A
Sbjct: 232 QLISYLSYALALWFGAYLVISGGLSVGTVFAFL 264
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 150 bits (380), Expect = 2e-41
Identities = 67/216 (31%), Positives = 106/216 (49%), Gaps = 44/216 (20%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
+E++ V+F YP VL++ ++ G +A++G SGSGKST+ LI P G+V
Sbjct: 1 LEVENVSFRYPGAEP-PVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRV 59
Query: 1374 MIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHK 1433
++G D+ + + L + Q+ LF+G+I +NI
Sbjct: 60 RLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENI----------------------- 96
Query: 1434 FISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQD 1493
LSGGQ+QR+ +ARA+ R+L+LDE +S LD+E E+ +
Sbjct: 97 -------------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQ 137
Query: 1494 ALRKVSKR-ATTIVVAHRLSTIREANMIAVVRDGAV 1528
A+ + AT IV+AHR T+ A+ I V+ DG V
Sbjct: 138 AIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 151 bits (384), Expect = 2e-41
Identities = 79/221 (35%), Positives = 126/221 (57%), Gaps = 22/221 (9%)
Query: 1314 IELKMVTFTY-PSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGK 1372
IE++ ++ Y P P V LK+ KVK G + +VG +G+GKST+I + RF + +GK
Sbjct: 7 IEVENLSVRYAPDLPPV--LKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGK 64
Query: 1373 VMIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIH 1432
+ I+G+D+ I ++ LR ++ Q+P LF+GTIR N+ + + S EI A
Sbjct: 65 IEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFD-EYSDEEIYGALR----- 118
Query: 1433 KFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQ 1492
V E G+ LS GQ+Q + +ARA+LK RVL+LDEA++++D ++ +Q
Sbjct: 119 -------------VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQ 165
Query: 1493 DALRKVSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGS 1533
+R+ +T + +AHRL TI + + I V+ G V EY
Sbjct: 166 KTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 150 bits (380), Expect = 2e-41
Identities = 66/219 (30%), Positives = 110/219 (50%), Gaps = 41/219 (18%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
+ V+F+YP + E +L++L+L + + +AL+G SG GKST+ L+ P +G I
Sbjct: 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEI 59
Query: 733 TLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHS 792
TLDG + L+ K L + I ++ Q P LF T++ N+
Sbjct: 60 TLDGVPVSDLE-KALSSLISVLNQRPYLFDTTLRNNL----------------------- 95
Query: 793 FISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQ 852
G + SGG++QR+ALAR +++D I+LLDEPT LD +E +
Sbjct: 96 ----------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLS 139
Query: 853 AIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIG 891
I ++ +T I I H L +++ + I+ L+ G ++ G
Sbjct: 140 LIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 150 bits (382), Expect = 3e-41
Identities = 72/218 (33%), Positives = 108/218 (49%), Gaps = 14/218 (6%)
Query: 674 EFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLIT 733
E K ++F+YP L ++L I + + +VG +G GKST+ L+ PT G +
Sbjct: 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVL 59
Query: 734 LDGHDLKSLQVKWLRTQIGMVGQEP--ILFATSILENVLMGKENATMKEAVAACKAASAH 791
+DG DL L +K LR ++G+V Q P F ++ E V G EN + E + A
Sbjct: 60 VDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEAL 119
Query: 792 SF--ISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESI 849
+ L LSGGQKQR+A+A + DP ILLLDEPT+ LD
Sbjct: 120 ELVGLEGL-RDRSPF------TLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRE 172
Query: 850 VQQAIDKISVGRTTIVIA-HRLATVKN-ANTIVVLDQG 885
+ + + K+ TI+I H L + A+ ++VL+ G
Sbjct: 173 LLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDG 210
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 151 bits (383), Expect = 4e-41
Identities = 78/239 (32%), Positives = 126/239 (52%), Gaps = 27/239 (11%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYD-----P 1368
IEL+ + Y + LKD L + G + AL+G SG GKST++ L+ R D P
Sbjct: 1 IELRDLNVYYGDK---HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAP 57
Query: 1369 NQGKVMIEGVDLRE--INVKWLRKQTALVGQEPALFAGTIRDNIALG------NPKASWA 1420
++G+V+++G D+ + ++V LR++ +V Q+P F G+I DN+A G K
Sbjct: 58 DEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELD 117
Query: 1421 EI-EEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEA 1479
E EEA +A + + LSGGQ+QR+ +ARA+ VLLLDE
Sbjct: 118 ERVEEALRKAALWDEVKDRLHALG---------LSGGQQQRLCLARALANEPEVLLLDEP 168
Query: 1480 SSALDLESEKHVQDALRKVSKRATTIVVAHRLS-TIREANMIAVVRDGAVVEYGSHETL 1537
+SALD S +++ + ++ K T ++V H + R A+ A + +G +VE+G E +
Sbjct: 169 TSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 153 bits (390), Expect = 8e-41
Identities = 81/267 (30%), Positives = 133/267 (49%), Gaps = 36/267 (13%)
Query: 1314 IELKMVTFTYPSR--PEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQG 1371
IEL+ V+ T+ VT L D L++ G + ++G SG+GKST++ LI P G
Sbjct: 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61
Query: 1372 KVMIEGVD---LREINVKWLRKQTALVGQEPALFAG-TIRDNIAL-----GNPKASWAEI 1422
V ++G D L E ++ LR++ ++ Q L + T+ +N+A G PKA EI
Sbjct: 62 SVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKA---EI 118
Query: 1423 EEAAEEAYIHKFISSLPQGYETQVGESG------VQLSGGQKQRIAIARAILKGSRVLLL 1476
++ E VG S QLSGGQKQR+AIARA+ ++LL
Sbjct: 119 KQRVAELL-------------ELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLC 165
Query: 1477 DEASSALDLESEKHVQDALRKV-SKRATTIV-VAHRLSTIRE-ANMIAVVRDGAVVEYGS 1533
DEA+SALD E+ + + + L+ + + TIV + H + ++ + +AV+ G +VE G+
Sbjct: 166 DEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGT 225
Query: 1534 HETLLASHLNGVYASLVRAETEANAFS 1560
+ A+ + + + E +
Sbjct: 226 VSEVFANPKHAITQEFIGETLEIDLPE 252
|
Length = 339 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 146 bits (371), Expect = 2e-39
Identities = 78/233 (33%), Positives = 120/233 (51%), Gaps = 28/233 (12%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
IE +G+T ++ R +L+ ++L + + LA++G SG GKST+ LI P G +
Sbjct: 1 IELRGLTKSFGGR---TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEV 57
Query: 733 TLDGHDLKSLQVKWL---RTQIGMVGQEPILF-ATSILENV-LMGKENATMKEAVAACKA 787
+DG D+ L L R ++GM+ Q LF + ++ ENV +E+ + E
Sbjct: 58 LIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEE----- 112
Query: 788 ASAHSFISELPLGYDTQVGDRGT------QLSGGQKQRIALARAMIKDPRILLLDEPTSA 841
I E+ L VG RG +LSGG K+R+ALARA+ DP +LL DEPT+
Sbjct: 113 ------IREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAG 166
Query: 842 LDSESESIVQQAIDKI--SVGRTTIVIAHRLATV-KNANTIVVLDQGSVVEIG 891
LD + ++ I + +G T+I++ H L T A+ I VL G +V G
Sbjct: 167 LDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEG 219
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 145 bits (368), Expect = 3e-39
Identities = 78/224 (34%), Positives = 117/224 (52%), Gaps = 26/224 (11%)
Query: 1315 ELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVM 1374
ELK ++F+YP L D L +K G V +VG +GSGKST++ L+ P G+V+
Sbjct: 1 ELKNLSFSYPDGARP-ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVL 59
Query: 1375 IEGVDLREINVKWLRKQTALVGQEPA--LFAGTIRDNIALG--NPKASWAEIEEAAEEAY 1430
++G DL ++++K LR++ LV Q P F T+ + +A G N EIEE EEA
Sbjct: 60 VDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEA- 118
Query: 1431 IHKFISSLPQGYETQVGESGV------QLSGGQKQRIAIARAILKGSRVLLLDEASSALD 1484
VG G+ LSGGQKQR+AIA + +LLLDE ++ LD
Sbjct: 119 ------------LELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLD 166
Query: 1485 LESEKHVQDALRKVSKRATTIVVA-HRLSTIRE-ANMIAVVRDG 1526
+ + + L+K+ TI++ H L + E A+ + V+ DG
Sbjct: 167 PAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDG 210
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 145 bits (368), Expect = 3e-39
Identities = 78/232 (33%), Positives = 124/232 (53%), Gaps = 32/232 (13%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
+ELK ++ TY S V L D L V+ G +AL+G SG GK+T++ LI P+ G++
Sbjct: 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEI 57
Query: 1374 MIEGVDLREINVKWLRKQTALVGQEPALFAG-TIRDNIALG-----NPKASWAE-IEEAA 1426
+I+G D+ + + R+ +V Q+ ALF T+ +NIA G PKA + E
Sbjct: 58 LIDGRDVTGVPPE--RRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELL 115
Query: 1427 EEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLE 1486
E + ++ P +LSGGQ+QR+A+ARA+ + +LLLDE SALD +
Sbjct: 116 ELVGLEGLLNRYPH-----------ELSGGQQQRVALARALAREPSLLLLDEPLSALDAK 164
Query: 1487 SEKHVQDALRKVSKR--ATTIVVAHRLSTIREANM----IAVVRDGAVVEYG 1532
+ +++ L+++ + TTI V H EA IAV+ +G +V+ G
Sbjct: 165 LREELREELKELQRELGITTIYVTHDQE---EALALADRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 145 bits (369), Expect = 4e-39
Identities = 85/245 (34%), Positives = 127/245 (51%), Gaps = 35/245 (14%)
Query: 1314 IELKMVTFTYPSRP-EVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGK 1372
IELK V+ + +VT LKD L V G + ++G SG+GKST+I I P G
Sbjct: 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGS 61
Query: 1373 VMIEGVDLREINVKWL---RKQTALVGQEPALFAG-TIRDNIAL-----GNPKASWAEIE 1423
V+++G DL ++ K L R++ ++ Q L + T+ +N+AL G PK AEIE
Sbjct: 62 VLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPK---AEIE 118
Query: 1424 EAAEEAYIHKFISSLPQGYETQVGESG------VQLSGGQKQRIAIARAILKGSRVLLLD 1477
E E VG QLSGGQKQR+ IARA+ +VLL D
Sbjct: 119 ERVLELL-------------ELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCD 165
Query: 1478 EASSALDLESEKHVQDALRKVSKR--ATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSH 1534
EA+SALD E+ + + LR +++ T +++ H + ++ + +AV+ G VVE G+
Sbjct: 166 EATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTV 225
Query: 1535 ETLLA 1539
E + A
Sbjct: 226 EEVFA 230
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 143 bits (362), Expect = 6e-39
Identities = 73/219 (33%), Positives = 108/219 (49%), Gaps = 48/219 (21%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
+E K V+ Y + +L ++L I + + +AL+G SG GKST+ I +P G I
Sbjct: 1 LELKNVSKRYG---QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSI 57
Query: 733 TLDGHDLKSL--QVKWLRTQIGMVGQEPILFAT-SILENVLMGKENATMKEAVAACKAAS 789
+DG DL L ++ LR +IGMV Q+ LF ++LEN+ +G
Sbjct: 58 LIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG----------------- 100
Query: 790 AHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESI 849
LSGGQ+QR+ALARA+ DP +LLLDEPTSALD +
Sbjct: 101 ----------------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRRE 138
Query: 850 VQQAIDKI--SVGRTTIVIAHRLATVKN-ANTIVVLDQG 885
V+ + + +G T +++ H L A+ +VVL G
Sbjct: 139 VRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDG 177
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 142 bits (360), Expect = 3e-38
Identities = 74/223 (33%), Positives = 124/223 (55%), Gaps = 14/223 (6%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
+E KG++ Y S L L+L + + LAL+G SG GK+T+ LI P G I
Sbjct: 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEI 57
Query: 733 TLDGHDLKSLQVKWLRTQIGMVGQEPILFAT-SILENVLMGKENATMKEAVAACKAASAH 791
+DG D+ + + R IGMV Q+ LF ++ EN+ G + + +A +
Sbjct: 58 LIDGRDVTGVPPE--RRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRE-- 113
Query: 792 SFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQ 851
+ EL +G + + +LSGGQ+QR+ALARA+ ++P +LLLDEP SALD++ ++
Sbjct: 114 --LLEL-VGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELR 170
Query: 852 QAIDKI--SVGRTTIVIAHRLA-TVKNANTIVVLDQGSVVEIG 891
+ + ++ +G TTI + H + A+ I V+++G +V++G
Sbjct: 171 EELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 143 bits (362), Expect = 3e-38
Identities = 77/239 (32%), Positives = 110/239 (46%), Gaps = 32/239 (13%)
Query: 673 IEFKGVTFAYPSRPETV-ILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGL 731
+E K ++ ++P+ +V L ++ I +TL LVG SG GKST+ I PT G
Sbjct: 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGS 61
Query: 732 ITLDGHDLKSL---QVKWLRTQIGMVGQEPILFATSILENVLMGKENATMK------EAV 782
I DG DL L K R +I MV Q+P M N M E +
Sbjct: 62 IIFDGKDLLKLSRRLRKIRRKEIQMVFQDP------------MSSLNPRMTIGEQIAEPL 109
Query: 783 AACKAASAHSFISELPLGYDTQVGDRGT-------QLSGGQKQRIALARAMIKDPRILLL 835
S E L VG +LSGGQ+QR+A+ARA+ +P++L+
Sbjct: 110 RIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIA 169
Query: 836 DEPTSALDSESESIVQQAIDKISV--GRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIG 891
DEPTSALD ++ + + K+ G T + I H L V A+ + V+ G +VE G
Sbjct: 170 DEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 142 bits (361), Expect = 4e-38
Identities = 78/234 (33%), Positives = 121/234 (51%), Gaps = 22/234 (9%)
Query: 673 IEFKGVTFAYPSRPETV-ILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGL 731
IE K V+ Y E V L+ +NL I + + +A+VG SG GKST+ L+ PT G
Sbjct: 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGE 61
Query: 732 ITLDGHDLKSLQVKWL----RTQIGMVGQEPILFAT-SILENVLM-----GKENATMKEA 781
+ ++G DL L K L R +IG V Q L ++LENV + GK K A
Sbjct: 62 VLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRA 121
Query: 782 VAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSA 841
+ E+ D + + ++LSGGQ+QR+A+ARA+I +P+I+L DEPT
Sbjct: 122 AEE---------LLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGN 172
Query: 842 LDSESESIVQQAIDKIS--VGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNH 893
LDS++ V + + +++ G+T I++ H K A+ ++ L G + E
Sbjct: 173 LDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEEEELD 226
|
Length = 226 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 139 bits (353), Expect = 1e-37
Identities = 76/219 (34%), Positives = 113/219 (51%), Gaps = 48/219 (21%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
+ELK V+ Y + TVL D L ++ G +VAL+G SGSGKST++ I +P+ G +
Sbjct: 1 LELKNVSKRYG---QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSI 57
Query: 1374 MIEGVDLR--EINVKWLRKQTALVGQEPALFAG-TIRDNIALGNPKASWAEIEEAAEEAY 1430
+I+G DL E + LR++ +V Q+ ALF T+ +NIALG
Sbjct: 58 LIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG----------------- 100
Query: 1431 IHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKH 1490
LSGGQ+QR+A+ARA+ VLLLDE +SALD + +
Sbjct: 101 ----------------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRRE 138
Query: 1491 VQDALRKVSKRA--TTIVVAHRLS-TIREANMIAVVRDG 1526
V+ L+ + + T ++V H L R A+ + V+RDG
Sbjct: 139 VRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDG 177
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 140 bits (355), Expect = 1e-37
Identities = 74/222 (33%), Positives = 114/222 (51%), Gaps = 28/222 (12%)
Query: 1314 IELKMVTFTYPSRPEVT--VLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQG 1371
I ++ +FT+ S + T LKD L+V G +VA+VG GSGKS+++ + + G
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60
Query: 1372 KVMIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYI 1431
V + G A V QEP + GTIR+NI G P +E E I
Sbjct: 61 SVSVPG-------------SIAYVSQEPWIQNGTIRENILFGKP------FDEERYEKVI 101
Query: 1432 H-----KFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLE 1486
+ LP G T++GE G+ LSGGQKQRI++ARA+ + + LLD+ SA+D
Sbjct: 102 KACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAH 161
Query: 1487 SEKHV-QDALRKV-SKRATTIVVAHRLSTIREANMIAVVRDG 1526
+H+ ++ + + T I+V H+L + A+ I V+ +G
Sbjct: 162 VGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNG 203
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 139 bits (353), Expect = 2e-37
Identities = 70/220 (31%), Positives = 115/220 (52%), Gaps = 22/220 (10%)
Query: 673 IEFKGVTFAYPSRPET--VILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKG 730
I + +F + S + L+ +NL +P + +A+VG G GKS++ + + + G
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60
Query: 731 LITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKE-NATM-KEAVAACKAA 788
+++ G I V QEP + +I EN+L GK + ++ + AC
Sbjct: 61 SVSVPGS-------------IAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKAC--- 104
Query: 789 SAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSE-SE 847
+ + LP G T++G++G LSGGQKQRI+LARA+ D I LLD+P SA+D+
Sbjct: 105 ALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGR 164
Query: 848 SIVQQAI-DKISVGRTTIVIAHRLATVKNANTIVVLDQGS 886
I + I + +T I++ H+L + +A+ IVVLD G
Sbjct: 165 HIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 141 bits (358), Expect = 2e-37
Identities = 80/225 (35%), Positives = 135/225 (60%), Gaps = 6/225 (2%)
Query: 1331 VLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRK 1390
VLK +K G V + G +GSGKS++ R D GK++I+G+D+ ++ + LR
Sbjct: 36 VLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS 95
Query: 1391 QTALVGQEPALFAGTIRDNIALGNP--KASWAEIEEAAEEAYIHKFISSLPQGYETQVGE 1448
+ +++ Q+P LF+G+IR N+ +P K + + EA E A + + SLP G + V E
Sbjct: 96 RLSIILQDPILFSGSIRFNL---DPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTE 152
Query: 1449 SGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVA 1508
G S GQ+Q +ARA ++ S +L++DEA++++D+ +E +Q + T + +A
Sbjct: 153 GGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIA 212
Query: 1509 HRLSTIREANMIAVVRDGAVVEYGSHETLLASHLNGVYASLVRAE 1553
HR+STI +A+++ V+ G +VE + E LLA +GV+ASLVR +
Sbjct: 213 HRVSTILDADLVLVLSRGILVECDTPENLLA-QEDGVFASLVRTD 256
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 138 bits (349), Expect = 6e-37
Identities = 67/222 (30%), Positives = 126/222 (56%), Gaps = 22/222 (9%)
Query: 671 GKIEFKGVTFAY-PSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTK 729
G+IE + ++ Y P P +L++++ + + + + +VG +G GKST+ + RF + +
Sbjct: 5 GEIEVENLSVRYAPDLPP--VLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEE 62
Query: 730 GLITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAAS 789
G I +DG D+ ++ ++ LR+ + ++ Q+P LF+ +I N+ E + +E A +
Sbjct: 63 GKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDE-YSDEEIYGALR--- 118
Query: 790 AHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESI 849
V + G LS GQ+Q + LARA++K PR+L+LDE T+++D ++++
Sbjct: 119 ---------------VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDAL 163
Query: 850 VQQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIG 891
+Q+ I + T + IAHRL T+ + + I+V+D G V E
Sbjct: 164 IQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYD 205
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 139 bits (352), Expect = 8e-37
Identities = 80/240 (33%), Positives = 121/240 (50%), Gaps = 21/240 (8%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
IE + ++F YP L+ ++L I + + L+G +G GKST+ L+ PT G +
Sbjct: 4 IEAENLSFRYP--GRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV 61
Query: 733 TLDGHDLKSLQVKW-LRTQIGMVGQEPI--LFATSILENVLMGKENATMKEAVAACKAAS 789
+DG D S + LR ++G+V Q P LF ++ + V G EN + + A
Sbjct: 62 LVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAE 121
Query: 790 AHSFISELPLGYDTQVGDRGTQ-LSGGQKQRIALARAMIKDPRILLLDEPTSALDSESES 848
A EL + DR LSGGQKQR+A+A + P ILLLDEPT+ LD +
Sbjct: 122 A----LELVGLEELL--DRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRR 175
Query: 849 IVQQAIDKI--SVGRTTIVIAHRLATVKN-ANTIVVLDQGSVV------EIGNHRQLLER 899
+ + + K+ G+T I++ H L V A+ +VVLD G ++ EI N +LL
Sbjct: 176 ELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDAELLLA 235
|
Length = 235 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 142 bits (359), Expect = 1e-36
Identities = 81/229 (35%), Positives = 121/229 (52%), Gaps = 16/229 (6%)
Query: 673 IEFKGVTFAYPSR--PETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKG 730
IE + V+ + L ++L IP + ++G SG GKST+ LI PT G
Sbjct: 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61
Query: 731 LITLDGHDLKSLQVKWLRT---QIGMVGQEPILFAT-SILENVLMGKENATMKEAVAACK 786
+ +DG DL +L LR +IGM+ Q L ++ ++ ENV E A + +A +
Sbjct: 62 SVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQR 121
Query: 787 AASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSES 846
A +G + QLSGGQKQR+A+ARA+ +P+ILL DE TSALD E+
Sbjct: 122 VAELLEL-----VGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPET 176
Query: 847 -ESIVQQAIDKI--SVGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIG 891
+SI++ + I +G T ++I H + VK + + VLDQG +VE G
Sbjct: 177 TQSILEL-LKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEG 224
|
Length = 339 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 138 bits (349), Expect = 1e-36
Identities = 71/221 (32%), Positives = 113/221 (51%), Gaps = 13/221 (5%)
Query: 673 IEFKGVTFAYPSRPETV-ILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGL 731
IE K ++ Y E V L+ ++L I + +A+VG SG GKST+ ++ PT G
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60
Query: 732 ITLDGHDLKSL----QVKWLRTQIGMVGQEPILFAT-SILENVLMGKENATMKEAVAACK 786
+ +DG D+ L + R IG V Q L + LENV + A + + +
Sbjct: 61 VRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRER 120
Query: 787 AASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSES 846
A E +G ++ ++LSGGQ+QR+A+ARA+ DP+I+L DEPT LDSE+
Sbjct: 121 AEEL----LER-VGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSET 175
Query: 847 ESIVQQAIDKIS--VGRTTIVIAHRLATVKNANTIVVLDQG 885
V + + +++ G T +V+ H + A+ I+ L G
Sbjct: 176 GKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDG 216
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 151 bits (383), Expect = 2e-36
Identities = 81/246 (32%), Positives = 150/246 (60%), Gaps = 5/246 (2%)
Query: 1314 IELKMVTFTYPSRPEVT-VLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGK 1372
I+ + V Y RPE+ VL ++ V +VG +G+GKS+++ + R + +G+
Sbjct: 1238 IKFEDVVLRY--RPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGR 1295
Query: 1373 VMIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIH 1432
++I+G D+ + + LRK ++ Q P LF+GT+R N+ N + + A++ E+ E A++
Sbjct: 1296 ILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFN-EHNDADLWESLERAHLK 1354
Query: 1433 KFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQ 1492
I G + +V E+G S GQ+Q +++ARA+L+ S++L+LDEA++A+D+ ++ +Q
Sbjct: 1355 DVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQ 1414
Query: 1493 DALRKVSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETLLASHLNGVYASLVRA 1552
+R+ K T +++AHRL+TI + + I V+ G VVE+ + E LL S+ ++ +V++
Sbjct: 1415 KTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLL-SNEGSAFSKMVQS 1473
Query: 1553 ETEANA 1558
ANA
Sbjct: 1474 TGAANA 1479
|
Length = 1622 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 138 bits (350), Expect = 3e-36
Identities = 68/241 (28%), Positives = 114/241 (47%), Gaps = 32/241 (13%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
+E + ++F Y +P IL L+ IP + ++G +G GKST+ + P G +
Sbjct: 3 LEVENLSFGYGGKP---ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEV 59
Query: 733 TLDGHDLKSLQVKWLRTQIGMVGQEPIL-FATSILENVLMGK----------ENATMKEA 781
LDG D+ SL K L ++ V Q P F ++ E VL+G+ +
Sbjct: 60 LLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIV 119
Query: 782 VAACKAASAHSFISELPLGYDTQVGDRG-TQLSGGQKQRIALARAMIKDPRILLLDEPTS 840
A + DR +LSGG++QR+ +ARA+ ++ ILLLDEPTS
Sbjct: 120 EEALELLGLEHLA------------DRPVDELSGGERQRVLIARALAQETPILLLDEPTS 167
Query: 841 ALDSESESIVQQAIDKISV--GRTTIVIAH--RLATVKNANTIVVLDQGSVVEIGNHRQL 896
LD + V + + ++ G T +++ H LA + A+ +++L G +V G ++
Sbjct: 168 HLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAA-RYADHLILLKDGKIVAQGTPEEV 226
Query: 897 L 897
L
Sbjct: 227 L 227
|
Length = 258 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 137 bits (348), Expect = 3e-36
Identities = 76/222 (34%), Positives = 125/222 (56%), Gaps = 16/222 (7%)
Query: 1328 EVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYD--PNQ---GKVMIEGVDL-- 1380
E LK+ L + + AL+G SG GKST++ + R D P GKV+ +G D+
Sbjct: 13 EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYD 72
Query: 1381 REINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKA----SWAEIEEAAEEAYIHKFIS 1436
++I+V LR++ +V Q+P F +I DNIA G P+ E++E EE+ +
Sbjct: 73 KKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYG-PRLHGIKDKKELDEIVEESLKK---A 128
Query: 1437 SLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALR 1496
+L + ++ +S + LSGGQ+QR+ IARA+ VLLLDE +SALD + +++ ++
Sbjct: 129 ALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQ 188
Query: 1497 KVSKRATTIVVAHRLS-TIREANMIAVVRDGAVVEYGSHETL 1537
++ K+ T ++V H + R ++ A DG +VEYG E +
Sbjct: 189 ELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQI 230
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 137 bits (347), Expect = 3e-36
Identities = 77/235 (32%), Positives = 123/235 (52%), Gaps = 24/235 (10%)
Query: 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGL 731
+IEFK V++ S IL+ +++ +VG SG GKST+ LI R DPT+G
Sbjct: 3 EIEFKEVSY---SSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGS 59
Query: 732 ITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENV-----LMGKENATMKEAVAACK 786
I +DG D+K++ V LR +IGMV Q+P LF ++ +N+ L G++N ++ ++
Sbjct: 60 ILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVG 119
Query: 787 AASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSES 846
++ V + LSGG+ QR+++AR + +P +LLLDEPTSALD S
Sbjct: 120 LNKEYAT---------RDVKN----LSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTS 166
Query: 847 ESIVQQAIDKIS--VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLE 898
I+++ I K+ + T I I H + K + L++G +VE
Sbjct: 167 TEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFT 221
|
Length = 241 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 137 bits (348), Expect = 4e-36
Identities = 77/236 (32%), Positives = 118/236 (50%), Gaps = 32/236 (13%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
IE K ++ YP L+ +NL I + +A++G SG GKST+ + DPT G I
Sbjct: 4 IEVKNLSKTYPGG--HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEI 61
Query: 733 TLDGHD---LKSLQVKWLRTQIGMVGQEPILFA-TSILENVLMGKENATMKEAVAACKAA 788
+G LK +++ LR IGM+ Q+ L S+LENVL+G+ T +
Sbjct: 62 LFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYT----------S 111
Query: 789 SAHSFISELP-------------LGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLL 835
+ S +G + R + LSGGQ+QR+A+ARA+++ P+I+L
Sbjct: 112 TWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILA 171
Query: 836 DEPTSALDSESESIVQQAIDKISV--GRTTIVIAHRLATVKN-ANTIVVLDQGSVV 888
DEP ++LD ES V + I+ G T IV H++ K A+ I+ L G +V
Sbjct: 172 DEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIV 227
|
Length = 258 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 136 bits (346), Expect = 5e-36
Identities = 79/241 (32%), Positives = 119/241 (49%), Gaps = 42/241 (17%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
IE + ++ YP+ L+ ++L I + +AL+G SG GKST+ + +PT G +
Sbjct: 1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSV 58
Query: 733 TLDGHDLKSLQVKWLRT---QIGMVGQEPILFA-TSILENVLMGKENATMKEAVAACKAA 788
+DG D+ L+ K LR QIGM+ Q+ L S+LENVL G+
Sbjct: 59 LIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGR--------------L 104
Query: 789 SAHSFISELPLGYD-----------TQVG------DRGTQLSGGQKQRIALARAMIKDPR 831
S L + +VG R QLSGGQ+QR+A+ARA+++ P+
Sbjct: 105 GRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPK 164
Query: 832 ILLLDEPTSALDSESESIVQQAIDKI--SVGRTTIVIAHR--LATVKNANTIVVLDQGSV 887
++L DEP ++LD S V + +I G T IV H+ LA + A+ IV L G +
Sbjct: 165 LILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAR-EYADRIVGLKDGRI 223
Query: 888 V 888
V
Sbjct: 224 V 224
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 137 bits (347), Expect = 6e-36
Identities = 73/248 (29%), Positives = 128/248 (51%), Gaps = 29/248 (11%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
+E++ ++F Y +P +L D + G + ++G +GSGKST++ + P G+V
Sbjct: 3 LEVENLSFGYGGKP---ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEV 59
Query: 1374 MIEGVDLREINVKWLRKQTALVGQEPALFAG-TIRDNIALG-NPKASW---------AEI 1422
+++G D+ ++ K L K+ A V Q P+ G T+ + + LG P +
Sbjct: 60 LLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIV 119
Query: 1423 EEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSA 1482
EEA E + + V E LSGG++QR+ IARA+ + + +LLLDE +S
Sbjct: 120 EEALELLGLEHLA-------DRPVDE----LSGGERQRVLIARALAQETPILLLDEPTSH 168
Query: 1483 LDLESEKHVQDALRKVSKR--ATTIVVAHRLS-TIREANMIAVVRDGAVVEYGS-HETLL 1538
LD+ + V + LR +++ T ++V H L+ R A+ + +++DG +V G+ E L
Sbjct: 169 LDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLT 228
Query: 1539 ASHLNGVY 1546
+L VY
Sbjct: 229 EENLREVY 236
|
Length = 258 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 136 bits (346), Expect = 6e-36
Identities = 75/228 (32%), Positives = 123/228 (53%), Gaps = 19/228 (8%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
IE+K ++ ++ + VLK L V+ G +V ++G SGSGKST++ + +P+ G +
Sbjct: 3 IEIKNLSKSFG---DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSI 59
Query: 1374 MIEGVD-LREINVKWLRKQTALVGQEPALFAG-TIRDNIALGNP----KASWAEIEEAAE 1427
++G D + ++ LR++ +V Q+ LF T+ +N+ L P K S AE E A
Sbjct: 60 TVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLA-PVKVKKLSKAEAREKAL 118
Query: 1428 EAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLES 1487
E + K G + QLSGGQ+QR+AIARA+ +V+L DE +SALD E
Sbjct: 119 E-LLEKV------GLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPEL 171
Query: 1488 EKHVQDALRKVSKRATT-IVVAHRLSTIRE-ANMIAVVRDGAVVEYGS 1533
V D ++ +++ T I+V H + RE A+ + + G ++E G
Sbjct: 172 VGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGP 219
|
Length = 240 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 136 bits (345), Expect = 7e-36
Identities = 74/235 (31%), Positives = 123/235 (52%), Gaps = 21/235 (8%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
IEF+ VT Y + V +LNL I + L L+G SG GK+T +I R +PT G I
Sbjct: 1 IEFENVTKRYGGGKKAV--NNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEI 58
Query: 733 TLDGHDLKSLQVKWLRTQIGMVGQEPILFA-TSILENV-----LMGKENATMKEAVAACK 786
+DG D++ LR +IG V Q+ LF ++ EN+ L+ ++E +
Sbjct: 59 FIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRE-----R 113
Query: 787 AASAHSFISELPLGYDTQVGDR-GTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSE 845
A + + P + DR +LSGGQ+QR+ +ARA+ DP +LL+DEP ALD
Sbjct: 114 ADELLALVGLDPAEF----ADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPI 169
Query: 846 SESIVQQAIDKI--SVGRTTIVIAHRL-ATVKNANTIVVLDQGSVVEIGNHRQLL 897
+ +Q+ ++ +G+T + + H + + A+ I ++ G +V++G ++L
Sbjct: 170 TRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEIL 224
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 133 bits (336), Expect = 2e-35
Identities = 62/219 (28%), Positives = 112/219 (51%), Gaps = 41/219 (18%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
+ + V+F+YP + + VLK+ L++K G +AL+G SGSGKST++ L+ P QG++
Sbjct: 1 LSINNVSFSYPEQEQ-QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEI 59
Query: 1374 MIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHK 1433
++GV + ++ K L +++ Q P LF T+R+N+
Sbjct: 60 TLDGVPVSDLE-KALSSLISVLNQRPYLFDTTLRNNL----------------------- 95
Query: 1434 FISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQD 1493
G + SGG++QR+A+AR +L+ + ++LLDE + LD +E+ +
Sbjct: 96 ----------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLS 139
Query: 1494 ALRKVSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYG 1532
+ +V K T I + H L+ I + I + +G ++ G
Sbjct: 140 LIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 134 bits (341), Expect = 2e-35
Identities = 71/239 (29%), Positives = 120/239 (50%), Gaps = 32/239 (13%)
Query: 1314 IELKMVTFTYPSRP-EVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGK 1372
+E+K ++ ++P+ V L D +K G + LVG SGSGKST+ I P G
Sbjct: 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGS 61
Query: 1373 VMIEGVDLREIN---VKWLRKQTALVGQEP--AL-FAGTIRDNIA-----LGNPKASWAE 1421
++ +G DL +++ K RK+ +V Q+P +L TI + IA G
Sbjct: 62 IIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKK-EA 120
Query: 1422 IEEAAEEAYIH-----KFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLL 1476
+EA + + ++ P +LSGGQ+QR+AIARA+ ++L+
Sbjct: 121 RKEAVLLLLVGVGLPEEVLNRYPH-----------ELSGGQRQRVAIARALALNPKLLIA 169
Query: 1477 DEASSALDLESEKHVQDALRKV-SKRATTIV-VAHRLSTIRE-ANMIAVVRDGAVVEYG 1532
DE +SALD+ + + D L+K+ + T++ + H L + + A+ +AV+ G +VE G
Sbjct: 170 DEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 135 bits (341), Expect = 2e-35
Identities = 77/247 (31%), Positives = 129/247 (52%), Gaps = 15/247 (6%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
IE + VT Y + + L++ G + L+G SGSGK+T + +I R +P G++
Sbjct: 1 IEFENVTKRYGGGK--KAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEI 58
Query: 1374 MIEGVDLREINVKWLRKQTALVGQEPALFAG-TIRDNIALGNPKAS-W--AEIEEAAEEA 1429
I+G D+RE + LR++ V Q+ LF T+ +NIAL PK W +I E A+E
Sbjct: 59 FIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIAL-VPKLLKWPKEKIRERADEL 117
Query: 1430 YIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEK 1489
+ P + +LSGGQ+QR+ +ARA+ +LL+DE ALD +
Sbjct: 118 L--ALVGLDPAEF---ADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRD 172
Query: 1490 HVQDALRKVSKR--ATTIVVAHRL-STIREANMIAVVRDGAVVEYGSHETLLASHLNGVY 1546
+Q+ +++ + T + V H + R A+ IA++++G +V+ G+ + +L S N
Sbjct: 173 QLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRSPANDFV 232
Query: 1547 ASLVRAE 1553
A V A+
Sbjct: 233 AEFVGAD 239
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 137 bits (348), Expect = 2e-35
Identities = 71/246 (28%), Positives = 128/246 (52%), Gaps = 40/246 (16%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
IE + V+ Y ++ + D L ++ G + L+G SGSGK+T + +I R +P G++
Sbjct: 2 IEFENVSKRYGNK---KAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEI 58
Query: 1374 MIEGVDLREINVKWLRKQTALVGQEPALFAG-TIRDNIA-----LGNPKASWAEIEEAAE 1427
+I+G D+ +++ LR++ V Q+ LF T+ +NIA LG K I++ A+
Sbjct: 59 LIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDK---ERIKKRAD 115
Query: 1428 E----------AYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLD 1477
E Y ++ +LSGGQ+QR+ +ARA+ +LL+D
Sbjct: 116 ELLDLVGLDPSEYADRYPH---------------ELSGGQQQRVGVARALAADPPILLMD 160
Query: 1478 EASSALDLESEKHVQDALRKVSKR--ATTIVVAHRLS-TIREANMIAVVRDGAVVEYGSH 1534
E ALD + K +Q+ ++++ K T + V H + ++ A+ IAV+ G +V+Y +
Sbjct: 161 EPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTP 220
Query: 1535 ETLLAS 1540
+ +LA+
Sbjct: 221 DEILAN 226
|
Length = 309 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 136 bits (344), Expect = 3e-35
Identities = 67/238 (28%), Positives = 120/238 (50%), Gaps = 22/238 (9%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
IE + +T Y + L ++ + + L+G +G GK+T+ ++ PT G I
Sbjct: 5 IEVRNLTKKY--GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEI 62
Query: 733 TLDGHDLKSLQVKWLRTQIGMVGQEPILFAT-SILENV-----LMGKENATMKEAVAACK 786
+ G+D+ K R +IG V QEP L+ ++ EN+ L G +E +
Sbjct: 63 LVLGYDVVKEPAKVRR-RIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEE-- 119
Query: 787 AASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSES 846
+ EL G + + + LSGG KQR+++A A++ DP +L+LDEPTS LD ES
Sbjct: 120 -------LLEL-FGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPES 171
Query: 847 ESIVQQAIDKIS-VGRTTIVIA-HRLATV-KNANTIVVLDQGSVVEIGNHRQLLERGG 901
+ + + +++ G TI+++ H L + + +++L+ G ++ G +L E+ G
Sbjct: 172 RREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFG 229
|
Length = 293 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 134 bits (340), Expect = 4e-35
Identities = 71/243 (29%), Positives = 124/243 (51%), Gaps = 35/243 (14%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
IE K ++ ++ + +L+ ++L + + + ++G SG GKST+ + +P G I
Sbjct: 3 IEIKNLSKSFG---DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSI 59
Query: 733 TLDGHD-LKSLQVKWLRTQIGMVGQEPILFA-TSILENVL--------MGKENATMKEAV 782
T+DG D + LR ++GMV Q+ LF ++LENV + K A ++A+
Sbjct: 60 TVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAR-EKAL 118
Query: 783 AACK----AASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEP 838
+ A A ++ + QLSGGQ+QR+A+ARA+ DP+++L DEP
Sbjct: 119 ELLEKVGLADKADAYPA---------------QLSGGQQQRVAIARALAMDPKVMLFDEP 163
Query: 839 TSALDSESESIVQQAIDKI-SVGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQL 896
TSALD E V + + G T I++ H + + A+ ++ +DQG ++E G +
Sbjct: 164 TSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEF 223
Query: 897 LER 899
+
Sbjct: 224 FDN 226
|
Length = 240 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 133 bits (337), Expect = 5e-35
Identities = 72/226 (31%), Positives = 111/226 (49%), Gaps = 19/226 (8%)
Query: 673 IEFKGVTFAYPSRPETV-ILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGL 731
+E + V+ Y V L ++L + + +ALVG SG GKST+ +I PT G
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 732 ITLDGHDLKSLQVKWLRTQIGMVGQEPILFA-TSILENVLMGKENATMKEAVAACKAASA 790
+ +DG V G V Q+ L ++L+NV +G E ++ A A
Sbjct: 61 VLVDG-----EPVTGPGPDRGYVFQQDALLPWLTVLDNVALGLE---LQGVPKAEARERA 112
Query: 791 HSFISELPL-GYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESI 849
+ + L G+ QLSGG +QR+ALARA+ DP +LLLDEP SALD+ +
Sbjct: 113 EELLELVGLSGF---ENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQ 169
Query: 850 VQQAIDKI--SVGRTTIVIAHRLA-TVKNANTIVVLDQ--GSVVEI 890
+Q+ + I G+T +++ H + V A+ +VVL G +V
Sbjct: 170 LQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAE 215
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 137 bits (347), Expect = 6e-35
Identities = 73/236 (30%), Positives = 124/236 (52%), Gaps = 23/236 (9%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
+E + V+ ++ + ++L I + + L+G SG GK+T+ +I F P+ G I
Sbjct: 6 LEIRNVSKSFGD---FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEI 62
Query: 733 TLDGHDLKSLQVKWLRTQIGMVGQEPILFAT-SILENVLMGKENATMKEAVAACKAASAH 791
LDG D+ + + + IGMV Q LF ++ ENV G + K A
Sbjct: 63 LLDGEDITDVPPE--KRPIGMVFQSYALFPHMTVEENVAFGLKVRKKL------KKAEIK 114
Query: 792 SFISE-LPLGYDTQVGDR-GTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESI 849
+ + E L L DR QLSGGQ+QR+ALARA++ +P++LLLDEP SALD++
Sbjct: 115 ARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQ 174
Query: 850 VQQAIDKI--SVGRTTIVIAH----RLATVKNANTIVVLDQGSVVEIGNHRQLLER 899
+++ + ++ +G T + + H LA ++ I V++ G + ++G ++ ER
Sbjct: 175 MRKELKELQRELGITFVYVTHDQEEALAM---SDRIAVMNDGRIEQVGTPEEIYER 227
|
Length = 352 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 137 bits (346), Expect = 8e-35
Identities = 74/234 (31%), Positives = 127/234 (54%), Gaps = 25/234 (10%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
+E++ V+ ++ T + D L +K G V L+G SG GK+T++ +I F P+ G++
Sbjct: 6 LEIRNVSKSFGD---FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEI 62
Query: 1374 MIEGVDLREINVKWLRKQTALVGQEPALFAG-TIRDNIALG---NPKASWAEIEEAAEEA 1429
+++G D+ +V ++ +V Q ALF T+ +N+A G K AEI+ EEA
Sbjct: 63 LLDGEDIT--DVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEA 120
Query: 1430 YIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEK 1489
+ + +G+ + QLSGGQ+QR+A+ARA++ +VLLLDE SALD + +
Sbjct: 121 --LELV--GLEGFADRKPH---QLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLRE 173
Query: 1490 HVQDALRKVSKRA--TTIVVAHRLSTIREANM----IAVVRDGAVVEYGSHETL 1537
++ L+++ + T + V H EA IAV+ DG + + G+ E +
Sbjct: 174 QMRKELKELQRELGITFVYVTHDQE---EALAMSDRIAVMNDGRIEQVGTPEEI 224
|
Length = 352 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 131 bits (333), Expect = 2e-34
Identities = 80/240 (33%), Positives = 128/240 (53%), Gaps = 27/240 (11%)
Query: 673 IEFKGVTFAYPSRP-ETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGL 731
IE K V+ + + L+ ++L +P + ++G SG GKST+ I PT G
Sbjct: 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGS 61
Query: 732 ITLDGHDLKSLQVKWLRT---QIGMVGQEPILFAT-SILENVLMGKENATMKEAVAACKA 787
+ +DG DL L K LR +IGM+ Q L ++ ++ ENV + E A + +A +
Sbjct: 62 VLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEER- 120
Query: 788 ASAHSFISELPLGYDTQVG--DRG----TQLSGGQKQRIALARAMIKDPRILLLDEPTSA 841
+ EL VG D+ QLSGGQKQR+ +ARA+ +P++LL DE TSA
Sbjct: 121 ------VLELL----ELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSA 170
Query: 842 LDSES-ESIVQ--QAIDKISVGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLL 897
LD E+ +SI+ + I++ +G T ++I H + VK + + V+++G VVE G ++
Sbjct: 171 LDPETTQSILALLRDINR-ELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVF 229
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 131 bits (332), Expect = 2e-34
Identities = 76/217 (35%), Positives = 107/217 (49%), Gaps = 35/217 (16%)
Query: 1314 IELKMVTFTYPS-RPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGK 1372
+E++ V+ TY VT L+D L V+ G VALVG SG GKST++ +I P G+
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 1373 VMIEGVDLREINVKWLRKQTALVGQEPALFA-GTIRDNIALGNPKA---SWAEIEEAAEE 1428
V+++G + V Q+ AL T+ DN+ALG + AE E AEE
Sbjct: 61 VLVDGEPVTGPG-----PDRGYVFQQDALLPWLTVLDNVALG-LELQGVPKAEARERAEE 114
Query: 1429 AYIHKFISSLPQGYETQVGESGV------QLSGGQKQRIAIARAILKGSRVLLLDEASSA 1482
+ VG SG QLSGG +QR+A+ARA+ VLLLDE SA
Sbjct: 115 -LLEL------------VGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSA 161
Query: 1483 LDLESEKHVQDALRKVSK--RATTIVVAHRLSTIREA 1517
LD + + +Q+ L + + T ++V H I EA
Sbjct: 162 LDALTREQLQEELLDIWRETGKTVLLVTH---DIDEA 195
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 135 bits (342), Expect = 2e-34
Identities = 78/250 (31%), Positives = 129/250 (51%), Gaps = 32/250 (12%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
+ELK V ++ S VLKD L ++ G V L+G SG GKST++ +I +P G++
Sbjct: 4 LELKNVRKSFGS---FEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEI 60
Query: 1374 MIEGVDLREINVKWLRKQTALVGQEPALF-AGTIRDNIALG--NPKASWAEIEEAAEEA- 1429
+I+G D+ ++ + ++ A+V Q AL+ T+ +NIA G AEI++ +E
Sbjct: 61 LIDGRDVTDLPPE--KRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVA 118
Query: 1430 ---YIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLE 1486
+ ++ P +QLSGGQ+QR+A+ARA+++ +V LLDE S LD +
Sbjct: 119 KLLGLEHLLNRKP-----------LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAK 167
Query: 1487 SEKHVQDALRKVSKR--ATTIVVAHRLSTIREA----NMIAVVRDGAVVEYGSHETLLAS 1540
++ ++K+ +R TTI V H EA + I V+ DG + + G+ L
Sbjct: 168 LRVLMRSEIKKLHERLGTTTIYVTHDQ---VEAMTLADRIVVMNDGRIQQVGTPLELYER 224
Query: 1541 HLNGVYASLV 1550
N A +
Sbjct: 225 PANLFVAGFI 234
|
Length = 338 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 144 bits (363), Expect = 3e-34
Identities = 129/479 (26%), Positives = 228/479 (47%), Gaps = 49/479 (10%)
Query: 964 TVEEEQQKPRPRK--FQLSEIWKLQRPEF------------AMIIFGFILGMHAGAILSI 1009
++++E +K +K F+L + K Q+ F ++ F+ +G L
Sbjct: 19 SIKDEVEKELNKKGTFELYKKIKTQKIPFFLPFKCLPASHRKLLGVSFVCATISGGTLPF 78
Query: 1010 FPLILGQALQVYFDDTASTLRRDVRYLSLALVGLGFGCIIFMTGQQGFCGWAGTKLTMRV 1069
F + G ++ L +V + +LV +G I ++ FC T ++
Sbjct: 79 FVSVFGVIMK------NMNLGENVNDIIFSLVLIGIFQFI-LSFISSFCMDVVTTKILKT 131
Query: 1070 RELLF-RSILKQEPGWFDFEENSTGV-LVSRLSIDSISFRSVLGDRFSVLLMGLSSAAVG 1127
+L F +S+ Q+ F +N+ G L S L + +G +F + + +SA +G
Sbjct: 132 LKLEFLKSVFYQDG---QFHDNNPGSKLTSDLDFYLEQVNAGIGTKF-ITIFTYASAFLG 187
Query: 1128 LGV-SLVLNWRLTLVAAALTPFTLGASYL-SLIINVGPKIDNSSYA----KASSIASGAV 1181
L + SL N RLTL + P Y+ +I N KI+ + SI A+
Sbjct: 188 LYIWSLFKNARLTLCITCVFPLI----YICGVICNKKVKINKKTSLLYNNNTMSIIEEAL 243
Query: 1182 SNIRTVTTFSAQEQIINSFDKALSEPKKKSVKRSQILGLTLGFSQGAMYVAYTFTLWFGA 1241
IRTV ++ ++ I+ F+ + K +K + + L +G G + +Y F W+G
Sbjct: 244 VGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESLHIGMINGFILASYAFGFWYGT 303
Query: 1242 YLV------KQGHASF--GVVYKIFLILVLSSFSVGQLAGLAPDTSMAATAIPAVLQITK 1293
++ +Q + F G V I L +++S F + + + + A ++ +I
Sbjct: 304 RIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEIIN 363
Query: 1294 RKPLIDNVK-GRKLERSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSG 1352
RKPL++N G+KL+ K I+ K V F Y +R +V + KD + G A VG SG
Sbjct: 364 RKPLVENNDDGKKLKDIKK--IQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESG 421
Query: 1353 SGKSTVIWLIQRFYDPNQGKVMI-EGVDLREINVKWLRKQTALVGQEPALFAGTIRDNI 1410
GKST++ LI+R YDP +G ++I + +L++IN+KW R + +V Q+P LF+ +I++NI
Sbjct: 422 CGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNI 480
|
Length = 1466 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 133 bits (337), Expect = 3e-34
Identities = 65/260 (25%), Positives = 120/260 (46%), Gaps = 32/260 (12%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
IE++ +T Y + T L +V+ G + L+G +G+GK+T++ ++ P G++
Sbjct: 5 IEVRNLTKKY--GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEI 62
Query: 1374 MIEGVDLREINVKWLRKQTALVGQEPALFAG-TIRDNIAL------GNPKASWAEIEEAA 1426
++ G D+ + +R++ V QEP+L+ T+R+N+ + + + IEE
Sbjct: 63 LVLGYDVVK-EPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELL 121
Query: 1427 EEA----YIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSA 1482
E +K + LSGG KQR++IA A+L +L+LDE +S
Sbjct: 122 ELFGLEDKANKKVR---------------TLSGGMKQRLSIALALLHDPELLILDEPTSG 166
Query: 1483 LDLESEKHVQDALRKVSKR--ATTIVVAHRLSTI-REANMIAVVRDGAVVEYGSHETLLA 1539
LD ES + + + LR+++K T ++ H L + + ++ DG ++ G+ E L
Sbjct: 167 LDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKE 226
Query: 1540 SHLNGVYASLVRAETEANAF 1559
L E
Sbjct: 227 KFGGKGVIELEPERLELAEL 246
|
Length = 293 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 143 bits (361), Expect = 4e-34
Identities = 143/649 (22%), Positives = 272/649 (41%), Gaps = 70/649 (10%)
Query: 297 LSTSHHYGGGDGRNNDP----------ELVSPYNEDDAEVAKPVGLFSLFKYSTKLDMIL 346
LS S G R++ E E D V L + Y + + +
Sbjct: 907 LSASSSDSGDQSRHHGSSAELQKAEAKEETWKLMEADKAQTGQVELSVYWDYMKAIGLFI 966
Query: 347 VLLGCIGALINGGALPWYSYFFGNFVNK-IANESSDPDKTQMMKDAEKICLLMTVLAAIV 405
L + N + +Y+ + + + N + + ++ + + +L
Sbjct: 967 TFLSIFLFVCNHVSALASNYWLSLWTDDPMVNGTQNNTSLRL-----SVYGALGILQGFA 1021
Query: 406 MMGAYLEITCWRLVGERSAQRIRTKYLRAVLRQDIAFFDTEVSTSDIMHGISSDIAQIQE 465
+ G + ++ + G ++++ + L LR ++FF+ S ++++ S ++ +
Sbjct: 1022 VFGYSMAVS---IGGIQASRVLHQDLLHNKLRSPMSFFERTPS-GNLVNRFSKELDTVDS 1077
Query: 466 VMGEKVAHFAHNIFTFICGYTVGFLRSWKVSLVVLSVTPLMMFCGMAYKAVYVGLTSKEE 525
++ + F ++F I V L + ++++ + L F Y A L E
Sbjct: 1078 MIPPVIKMFMGSLFNVIGALIVILLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLES 1137
Query: 526 ASYRRAGSVAEQAISSIRTVFSFVAEDHFAVRYAGLLADSIPFGAKLGFAKGAGMGVIYL 585
S S + + + + +F ++ F + + L D Y
Sbjct: 1138 VSRSPVYSHFNETLLGVSVIRAFEEQERFIHQ-SDLKVD-------------ENQKAYYP 1183
Query: 586 VTYATWALAFWYGSILVARKELSGGAAI--ACFFGV------NVGGRGLALSLSYFAQFA 637
A LA R E G + A F V + G GL++S S F
Sbjct: 1184 SIVANRWLAV--------RLECVGNCIVLFAALFAVISRHSLSAGLVGLSVSYSLQVTFY 1235
Query: 638 ------------QGTVAATRVFEIIDRVPEIDPYNSEGRKLSSV---SGKIEFKGVTFAY 682
VA R+ E + E P+ + S G++EF+ Y
Sbjct: 1236 LNWLVRMSSEMETNIVAVERLKEYSETEKEA-PWQIQETAPPSGWPPRGRVEFRNYCLRY 1294
Query: 683 PSRPE-TVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKS 741
R + ++LR +N+ I + + +VG +G GKS++ + R + +G I +DG ++
Sbjct: 1295 --REDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAK 1352
Query: 742 LQVKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGY 801
+ + LR +I ++ Q+P+LF+ S+ N L + +E A + A +F+S LP
Sbjct: 1353 IGLHDLRFKITIIPQDPVLFSGSLRMN-LDPFSQYSDEEVWWALELAHLKTFVSALPDKL 1411
Query: 802 DTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGR 861
D + + G LS GQ+Q + LARA+++ +IL+LDE T+A+D E+++++Q I
Sbjct: 1412 DHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDC 1471
Query: 862 TTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLERGGAYHDLVKLA 910
T + IAHRL T+ + ++VLD+G V E G LL++ G ++ + K A
Sbjct: 1472 TVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQRGIFYSMAKDA 1520
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 131 bits (331), Expect = 4e-34
Identities = 81/222 (36%), Positives = 128/222 (57%), Gaps = 14/222 (6%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
IE K V++ S +LKD +K +GG++ +VG SG+GKST+I LI R DP +G +
Sbjct: 4 IEFKEVSY---SSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSI 60
Query: 1374 MIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHK 1433
+I+GVD++ I+V LR++ +V Q+P LF GT++DNI G ++ E Y+
Sbjct: 61 LIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVD---VEYYLS- 116
Query: 1434 FISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQD 1493
I L + Y T+ ++ LSGG+ QR++IAR + VLLLDE +SALD S + +++
Sbjct: 117 -IVGLNKEYATRDVKN---LSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEE 172
Query: 1494 ALRKVSKRA--TTIVVAHRLSTI-REANMIAVVRDGAVVEYG 1532
+ K+ + T I + H + R + A + G +VEY
Sbjct: 173 LIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYA 214
|
Length = 241 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 132 bits (334), Expect = 4e-34
Identities = 82/251 (32%), Positives = 132/251 (52%), Gaps = 37/251 (14%)
Query: 667 SSVSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYD 726
+S IE +GVT ++ R VIL ++L +P + LA++G SG GKST+ LI
Sbjct: 3 ASPEPLIEVRGVTKSFGDR---VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR 59
Query: 727 PTKGLITLDGHDLKSL---QVKWLRTQIGMVGQEPILF-ATSILENV------------L 770
P KG I +DG D+ L ++ +R ++G++ Q+ LF + ++ ENV
Sbjct: 60 PDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPES 119
Query: 771 MGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDP 830
+ +E MK + + A+A + SEL SGG ++R+ALARA+ DP
Sbjct: 120 LIRELVLMKLELVGLRGAAADLYPSEL---------------SGGMRKRVALARAIALDP 164
Query: 831 RILLLDEPTSALDSESESIVQQAIDKI--SVGRTTIVIAHRLATVKN-ANTIVVLDQGSV 887
+L LDEPTS LD S ++ + I ++ ++G T I++ H L ++ A+ + VL G V
Sbjct: 165 ELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKV 224
Query: 888 VEIGNHRQLLE 898
+ G +LL
Sbjct: 225 IAEGTPEELLA 235
|
Length = 263 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 130 bits (328), Expect = 1e-33
Identities = 79/240 (32%), Positives = 122/240 (50%), Gaps = 29/240 (12%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
IE + ++F YP LKD L+++ G V L+G +GSGKST++ L+ P G+V
Sbjct: 4 IEAENLSFRYP--GRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV 61
Query: 1374 MIEGVDLR-EINVKWLRKQTALVGQEPA--LFAGTIRDNIALG--NPKASWAEIEEAAEE 1428
+++G+D E ++ LR++ LV Q P LF T+ D +A G N EIEE E
Sbjct: 62 LVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAE 121
Query: 1429 AYIHKFISSLPQGYETQVGESGVQ------LSGGQKQRIAIARAILKGSRVLLLDEASSA 1482
A VG + LSGGQKQR+AIA + G +LLLDE ++
Sbjct: 122 A-------------LELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAG 168
Query: 1483 LDLESEKHVQDALRKVSKRA--TTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLA 1539
LD + + + + L+K+ + T I+V H L + E A+ + V+ DG ++ G +
Sbjct: 169 LDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFN 228
|
Length = 235 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 2e-33
Identities = 61/214 (28%), Positives = 101/214 (47%), Gaps = 60/214 (28%)
Query: 1315 ELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVM 1374
E++ ++F Y R L + L +K G +VALVG +GSGKST++ I P G+++
Sbjct: 1 EIENLSFRYGGRT---ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEIL 57
Query: 1375 IEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHKF 1434
I+G D+ ++ ++ LR++
Sbjct: 58 IDGKDIAKLPLEELRRR------------------------------------------- 74
Query: 1435 ISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDA 1494
I +PQ LSGGQ+QR+A+ARA+L +LLLDE +S LD S + + +
Sbjct: 75 IGYVPQ------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLEL 122
Query: 1495 LRKVSKR-ATTIVVAHRLSTIREA-NMIAVVRDG 1526
LR++++ T I+V H A + + V++DG
Sbjct: 123 LRELAEEGRTVIIVTHDPELAELAADRVIVLKDG 156
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 129 bits (326), Expect = 3e-33
Identities = 65/231 (28%), Positives = 116/231 (50%), Gaps = 35/231 (15%)
Query: 1328 EVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPN-----QGKVMIEGVDLRE 1382
+ LKD L + + AL+G SG GKST++ + R D +G+V+++G ++ +
Sbjct: 19 DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYD 78
Query: 1383 --INVKWLRKQTALVGQEPALFAGTIRDNIALGNPKAS---WAEIEEAAEEAYIHKFISS 1437
++V LR++ +V Q+P F +I DN+A G + E++E E +
Sbjct: 79 PKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYG-LRLHGIKDKELDEIVESS-------- 129
Query: 1438 LPQGYETQVG----------ESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLES 1487
+ +S + LSGGQ+QR+ IARA+ VLL+DE +SALD S
Sbjct: 130 -----LKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPIS 184
Query: 1488 EKHVQDALRKVSKRATTIVVAHRLS-TIREANMIAVVRDGAVVEYGSHETL 1537
+++ + ++ K+ T ++V H + R ++ A G +VE+G + +
Sbjct: 185 TLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKI 235
|
Length = 253 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 130 bits (330), Expect = 4e-33
Identities = 77/240 (32%), Positives = 121/240 (50%), Gaps = 28/240 (11%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
IEF+ V+ Y ++ + +NL I + L L+G SG GK+T +I R +PT G I
Sbjct: 2 IEFENVSKRYGNKK---AVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEI 58
Query: 733 TLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAAC------K 786
+DG D+ L LR +IG V Q+ LF + T+ E +A
Sbjct: 59 LIDGEDISDLDPVELRRKIGYVIQQIGLFP------------HLTVAENIATVPKLLGWD 106
Query: 787 AASAHSFISEL--PLGYD-TQVGDR-GTQLSGGQKQRIALARAMIKDPRILLLDEPTSAL 842
EL +G D ++ DR +LSGGQ+QR+ +ARA+ DP ILL+DEP AL
Sbjct: 107 KERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGAL 166
Query: 843 DSESESIVQQAIDKI--SVGRTTIVIAHRL-ATVKNANTIVVLDQGSVVEIGNHRQLLER 899
D + +Q+ I ++ +G+T + + H + +K A+ I V+D G +V+ ++L
Sbjct: 167 DPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILAN 226
|
Length = 309 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 127 bits (321), Expect = 5e-33
Identities = 76/213 (35%), Positives = 114/213 (53%), Gaps = 21/213 (9%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
IE+K + ++ VLK L VK G +V ++G SGSGKST++ I +P+ G +
Sbjct: 1 IEIKNLHKSFGDF---HVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTI 57
Query: 1374 MIEGVDL--REINVKWLRKQTALVGQEPALFAG-TIRDNIALGNP----KASWAEIEEAA 1426
+I+G+ L + N+ LR++ +V Q+ LF T+ +NI L P S AE EE A
Sbjct: 58 IIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLA-PIKVKGMSKAEAEERA 116
Query: 1427 EEAYIHKFISSLPQ-GYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDL 1485
E L + G + QLSGGQ+QR+AIARA+ +V+L DE +SALD
Sbjct: 117 LEL--------LEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDP 168
Query: 1486 ESEKHVQDALRKVSKRATT-IVVAHRLSTIREA 1517
E V D ++ +++ T +VV H + RE
Sbjct: 169 ELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREV 201
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 135 bits (342), Expect = 7e-33
Identities = 75/255 (29%), Positives = 123/255 (48%), Gaps = 43/255 (16%)
Query: 673 IEFKGVTFAYPSRPETVI--------LRSLNLVIPSSKTLALVGTSGGGKSTVFALIERF 724
+ + ++ Y SR + + ++ + +TL LVG SG GKST+ ++
Sbjct: 281 LSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGL 340
Query: 725 YDPTKGLITLDGHD--LKSLQVKWLRTQIGMVGQEPILFAT--------SILENVLM--- 771
P+ G I DG D L +++ LR +I MV Q+P +++ IL L
Sbjct: 341 LPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDP--YSSLNPRMTVGDILAEPLRIHG 398
Query: 772 GKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGT-QLSGGQKQRIALARAMIKDP 830
G A + VA +G + DR +LSGGQ+QR+A+ARA+ +P
Sbjct: 399 GGSGAERRARVAELLEL----------VGLPPEFLDRYPHELSGGQRQRVAIARALALEP 448
Query: 831 RILLLDEPTSALDSESESIVQQAIDKIS-----VGRTTIVIAHRLATVKN-ANTIVVLDQ 884
++L+LDEP SALD S+ Q ++ + +G T + I+H LA V+ A+ + V+
Sbjct: 449 KLLILDEPVSALD---VSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYD 505
Query: 885 GSVVEIGNHRQLLER 899
G +VE G ++ E
Sbjct: 506 GRIVEEGPTEKVFEN 520
|
Length = 539 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 128 bits (323), Expect = 9e-33
Identities = 79/248 (31%), Positives = 120/248 (48%), Gaps = 36/248 (14%)
Query: 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDP---- 727
IE + + Y + L+ +NL IP +K AL+G SG GKST+ + R D
Sbjct: 7 AIEVRDLNLYYGDK---HALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGA 63
Query: 728 -TKGLITLDGHDL--KSLQVKWLRTQIGMVGQEPILFATSILENV-----LMGKENATMK 779
+G + LDG ++ + V LR ++GMV Q+P F SI +NV L G ++ +
Sbjct: 64 RVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELD 123
Query: 780 EAVAAC--KAASAHSFISELPLGYDTQVGDR----GTQLSGGQKQRIALARAMIKDPRIL 833
E V + KAA +V DR LSGGQ+QR+ +ARA+ P +L
Sbjct: 124 EIVESSLKKAALWD------------EVKDRLHKSALGLSGGQQQRLCIARALAVKPEVL 171
Query: 834 LLDEPTSALDSESESIVQQAIDKISVGRTTIVI-AHRLATVKN-ANTIVVLDQGSVVEIG 891
L+DEPTSALD S +++ I ++ + TIVI H + ++ G +VE G
Sbjct: 172 LMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFG 230
Query: 892 NHRQLLER 899
++
Sbjct: 231 PTDKIFTN 238
|
Length = 253 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 128 bits (324), Expect = 9e-33
Identities = 77/237 (32%), Positives = 123/237 (51%), Gaps = 31/237 (13%)
Query: 1332 LKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWL--- 1388
+ D L V+ G + ++G SGSGKST++ I R +P GKV+I+G D+ ++ K L
Sbjct: 40 VNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELREL 99
Query: 1389 -RKQTALVGQEPALFAG-TIRDNIAL-----GNPKASWAEIEEAAEEAY----IHKFISS 1437
RK+ ++V Q AL T+ +N+A G P+ AE EE A EA + +
Sbjct: 100 RRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPR---AEREERAAEALELVGLEGWEHK 156
Query: 1438 LPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRK 1497
P +LSGG +QR+ +ARA+ +LL+DEA SALD + +QD L +
Sbjct: 157 YPD-----------ELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLR 205
Query: 1498 VSK--RATTIVVAHRLS-TIREANMIAVVRDGAVVEYGSHETLLASHLNGVYASLVR 1551
+ + T + + H L +R + IA+++DG +V+ G+ E +L + N R
Sbjct: 206 LQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNPANDYVREFFR 262
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 138 bits (348), Expect = 1e-32
Identities = 140/534 (26%), Positives = 236/534 (44%), Gaps = 77/534 (14%)
Query: 423 SAQRIRTKYLRAVLRQDIAFFDTEVSTSDIMHGISSDIAQIQEVMGEKVAHFAHNIFTFI 482
+A+R+ L ++LR + FF T T +++ S DI I VA+ + +
Sbjct: 981 AAKRLHDAMLNSILRAPMLFFHTN-PTGRVINRFSKDIGDIDR----NVANLMNMFMNQL 1035
Query: 483 CGYTVGFLRSWKVSLVVL-SVTPLMMFCGMAYKAVYVGLTSKEEASYRRAGSVAE----- 536
F VS + L ++ PL++ AY +Y TS+E RR SV
Sbjct: 1036 WQLLSTFALIGTVSTISLWAIMPLLILFYAAY--LYYQSTSRE---VRRLDSVTRSPIYA 1090
Query: 537 ---QAISSIRTVFSFVAEDHFAVRYAGLLADSIPFGAKLGFAKGAGMGVIYLVTYATWAL 593
+A++ + ++ ++ A D A + ++I F T A +
Sbjct: 1091 QFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRF------------------TLANTSS 1132
Query: 594 AFWYGSILVARKELSGGAAIACFFGVNVGGRG-----------LALSLSYF--------- 633
W L R E GG I V G + L LSY
Sbjct: 1133 NRW----LTIRLETLGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSG 1188
Query: 634 ----AQFAQGTV-AATRVFEIIDRVPEIDPYNSEGRKLSS--VSGKIEFKGVTFAYPSRP 686
A A+ ++ + RV ID E R +S G I+F+ V Y RP
Sbjct: 1189 VLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRY--RP 1246
Query: 687 E-TVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVK 745
+L L+ + S+ + +VG +G GKS++ + R + KG I +D D+ +
Sbjct: 1247 GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLT 1306
Query: 746 WLRTQIGMVGQEPILFATSILENVLMGKE--NATMKEAVAACKAASAHSFISELPLGYDT 803
LR + ++ Q P+LF+ ++ N+ E +A + EA+ + A I P G D
Sbjct: 1307 DLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEAL---ERAHIKDVIDRNPFGLDA 1363
Query: 804 QVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTT 863
+V + G S GQ+Q ++LARA+++ +IL+LDE T+++D ++S++Q+ I + T
Sbjct: 1364 EVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTM 1423
Query: 864 IVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLER-GGAYHDLVKLASEAVSQ 916
+VIAHRL T+ + + I+VL G V+E + ++LL R A+ +V A +Q
Sbjct: 1424 LVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFRMVHSTGPANAQ 1477
|
Length = 1495 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 1e-32
Identities = 79/236 (33%), Positives = 117/236 (49%), Gaps = 39/236 (16%)
Query: 1314 IELKMVTFTYPSRPE-VTVLKDFCLKVKGGSMVALVGGSGSGKST---VIWLIQRFYDPN 1369
IELK ++ TY E V LK L ++ G VA+VG SGSGKST ++ + R P
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR---PT 57
Query: 1370 QGKVMIEGVDLREINVKWL----RKQTALVGQEPALFAG-TIRDNIAL-----GNPKASW 1419
G+V ++G D+ +++ K L R+ V Q L T +N+ L G PK
Sbjct: 58 SGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKER 117
Query: 1420 AE-IEEAAE----EAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVL 1474
E EE E ++ + S +LSGGQ+QR+AIARA+ +++
Sbjct: 118 RERAEELLERVGLGDRLNHYPS---------------ELSGGQQQRVAIARALANDPKII 162
Query: 1475 LLDEASSALDLESEKHVQDALRKVSKRA--TTIVVAHRLSTIREANMIAVVRDGAV 1528
L DE + LD E+ K V + LR+++K A T +VV H A+ I +RDG +
Sbjct: 163 LADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 127 bits (322), Expect = 1e-32
Identities = 77/244 (31%), Positives = 121/244 (49%), Gaps = 27/244 (11%)
Query: 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYD----- 726
IE + + Y E L+++NL IP ++ AL+G SG GKST+ + R D
Sbjct: 1 AIEIENLNLFYG---EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGV 57
Query: 727 PTKGLITLDGHDL--KSLQVKWLRTQIGMVGQEPILFATSILENVLMG------KENATM 778
+G + DG D+ K + V LR ++GMV Q+P F SI +N+ G K+ +
Sbjct: 58 RIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKEL 117
Query: 779 KEAV-AACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDE 837
E V + K A+ L ++ D LSGGQ+QR+ +ARA+ +P +LLLDE
Sbjct: 118 DEIVEESLKKAA-------LWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDE 170
Query: 838 PTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKNAN--TIVVLDQGSVVEIGNHRQ 895
PTSALD + +++ I ++ T +++ H + + T D G +VE G Q
Sbjct: 171 PTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYD-GELVEYGPTEQ 229
Query: 896 LLER 899
+
Sbjct: 230 IFTN 233
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 126 bits (320), Expect = 1e-32
Identities = 76/232 (32%), Positives = 120/232 (51%), Gaps = 33/232 (14%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
I F+ V+ AYP E LR ++ IP + + L G SG GKST+ LI PT+G I
Sbjct: 2 IRFENVSKAYPGGRE--ALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKI 59
Query: 733 TLDGHDLKSL---QVKWLRTQIGMVGQE-PILFATSILENV-----LMGKENATMKEAVA 783
++GHDL L ++ +LR QIG+V Q+ +L ++ ENV ++GK ++ V+
Sbjct: 60 LVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVS 119
Query: 784 AC-----KAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEP 838
A + S QLSGG++QR+A+ARA++ P +LL DEP
Sbjct: 120 EVLDLVGLKHKARALPS---------------QLSGGEQQRVAIARAIVNQPAVLLADEP 164
Query: 839 TSALDSESESIVQQAIDKISVGRTTIVIA-HRLATVKNANT-IVVLDQGSVV 888
T LD + + + ++I+ TT+++A H L V ++ L+ G +V
Sbjct: 165 TGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLV 216
|
Length = 223 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 3e-32
Identities = 72/215 (33%), Positives = 107/215 (49%), Gaps = 35/215 (16%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
+E++ V+ ++ V VL+D L V+ G VA++G SG GKST++ LI P G+V
Sbjct: 4 LEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEV 60
Query: 1374 MIEGVDLREINVKWLRKQTALVGQEPALFAG-TIRDNIALG--NPKASWAEIEEAAEEAY 1430
+++G + V QE AL T+ DN+ALG S AE E A+E
Sbjct: 61 LLDGRPVTGP-----GPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKE-L 114
Query: 1431 IHKFISSLPQGYETQVGESGV------QLSGGQKQRIAIARAILKGSRVLLLDEASSALD 1484
+ VG +G QLSGG +QR+AIARA+ ++LLLDE ALD
Sbjct: 115 LEL------------VGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALD 162
Query: 1485 LESEKHVQDALRK-VSKRATTIV-VAHRLSTIREA 1517
+ + +QD L + + T++ V H + EA
Sbjct: 163 ALTREELQDELLRLWEETRKTVLLVTH---DVDEA 194
|
Length = 248 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 126 bits (318), Expect = 4e-32
Identities = 67/222 (30%), Positives = 108/222 (48%), Gaps = 25/222 (11%)
Query: 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGL 731
+E +GV+ ++ +L +NL + + +A++G SG GKST+ LI PT G
Sbjct: 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGE 59
Query: 732 ITLDGHDLKSLQVKWLRTQIGMVGQEPILFA-TSILENVLMGKENATMKEAVAACKAASA 790
+ LDG + IG V QE L ++L+NV +G E +A A +A
Sbjct: 60 VLLDGRPVTGPGPD-----IGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKEL 114
Query: 791 HSFISELPLGYDTQVGDRGT----QLSGGQKQRIALARAMIKDPRILLLDEPTSALDSES 846
L L + QLSGG +QR+A+ARA+ P++LLLDEP ALD+ +
Sbjct: 115 ------LEL---VGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALT 165
Query: 847 ESIVQQAIDKI--SVGRTTIVIAHRLA-TVKNANTIVVLDQG 885
+Q + ++ +T +++ H + V A+ +VVL
Sbjct: 166 REELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207
|
Length = 248 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 124 bits (315), Expect = 5e-32
Identities = 79/236 (33%), Positives = 120/236 (50%), Gaps = 34/236 (14%)
Query: 1314 IELKMVTFTYPSRPE-VTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGK 1372
IELK V+ Y E V LKD L+++ G VA+VG SGSGKST++ L+ P G+
Sbjct: 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGE 61
Query: 1373 VMIEGVDLREINVKWL----RKQTALVGQEPALFAG-TIRDNIALGN--PKASWAEIEEA 1425
V+I G DL +++ K L RK+ V Q L T+ +N+ L S + A
Sbjct: 62 VLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRA 121
Query: 1426 AEEA---------YIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLL 1476
AEE + K S +LSGGQ+QR+AIARA++ +++L
Sbjct: 122 AEELLEVLGLEDRLLKKKPS---------------ELSGGQQQRVAIARALINNPKIILA 166
Query: 1477 DEASSALDLESEKHVQDALRKVSK--RATTIVVAHRLSTIREANMIAVVRDGAVVE 1530
DE + LD ++ K V + LR+++K T I+V H + A+ + ++DG + E
Sbjct: 167 DEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222
|
Length = 226 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 124 bits (315), Expect = 6e-32
Identities = 83/243 (34%), Positives = 128/243 (52%), Gaps = 32/243 (13%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
IEL+ +T ++ R TVLK L V+ G ++A++G SGSGKST++ LI P+ G+V
Sbjct: 1 IELRGLTKSFGGR---TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEV 57
Query: 1374 MIEGVDLREINVKWL---RKQTALVGQEPALFAG-TIRDNIALG---NPKASWAEIEEAA 1426
+I+G D+ ++ L R++ ++ Q ALF T+ +N+A + + S EI E
Sbjct: 58 LIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIV 117
Query: 1427 EEAYIHKFISSLPQGYETQVGESGV------QLSGGQKQRIAIARAILKGSRVLLLDEAS 1480
E VG G +LSGG K+R+A+ARA+ +LL DE +
Sbjct: 118 LEKL-------------EAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPT 164
Query: 1481 SALDLESEKHVQDALRKVSKR--ATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETL 1537
+ LD + + D +R + K T+I+V H L T A+ IAV+ DG +V G+ E L
Sbjct: 165 AGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEEL 224
Query: 1538 LAS 1540
AS
Sbjct: 225 RAS 227
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 124 bits (313), Expect = 6e-32
Identities = 68/233 (29%), Positives = 113/233 (48%), Gaps = 42/233 (18%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
IE K + ++ +L+ ++L + + + ++G SG GKST+ I +P G I
Sbjct: 1 IEIKNLHKSFGDF---HVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTI 57
Query: 733 TLDGHDL--KSLQVKWLRTQIGMVGQEPILFA-TSILENVLMG-----KENATMKEAVAA 784
+DG L + LR ++GMV Q+ LF ++LEN+ + + EA
Sbjct: 58 IIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSK--AEAE-- 113
Query: 785 CKAASAHSFISELPLGYDTQVG--DRGT----QLSGGQKQRIALARAMIKDPRILLLDEP 838
E L +VG D+ QLSGGQ+QR+A+ARA+ +P+++L DEP
Sbjct: 114 -----------ERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEP 162
Query: 839 TSALDSES-----ESIVQQAIDKISVGRTTIVIAHRLATVKN-ANTIVVLDQG 885
TSALD E + + A + G T +V+ H + + A+ ++ +D G
Sbjct: 163 TSALDPELVGEVLDVMKDLAEE----GMTMVVVTHEMGFAREVADRVIFMDDG 211
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 132 bits (334), Expect = 6e-32
Identities = 79/272 (29%), Positives = 131/272 (48%), Gaps = 47/272 (17%)
Query: 1296 PLIDNVKGRKLERSKPLGIE----LKMVTFTYPSRP--------EVTVLKDFCLKVKGGS 1343
P + + K +L R PL E ++ ++ Y SR EV + D ++ G
Sbjct: 259 PRLGDEKIIRLPRRGPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGE 318
Query: 1344 MVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEG--VDLREINVKWLRKQTALVGQEPAL 1401
+ LVG SGSGKST+ ++ P+ G ++ +G +DL ++ LR++ +V Q+P
Sbjct: 319 TLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDP-- 376
Query: 1402 FAG-----TIRDNIA--LG-NPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGV-- 1451
++ T+ D +A L + S AE E VG
Sbjct: 377 YSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELL-------------ELVGLPPEFL 423
Query: 1452 -----QLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKR--ATT 1504
+LSGGQ+QR+AIARA+ ++L+LDE SALD+ + V + L+ + + T
Sbjct: 424 DRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTY 483
Query: 1505 IVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHE 1535
+ ++H L+ +R A+ +AV+ DG +VE G E
Sbjct: 484 LFISHDLAVVRYIADRVAVMYDGRIVEEGPTE 515
|
Length = 539 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 124 bits (314), Expect = 9e-32
Identities = 73/228 (32%), Positives = 121/228 (53%), Gaps = 16/228 (7%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
+E + ++ YP+ L+++NL I + +A++G SG GKST+ I R +P+ G I
Sbjct: 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSI 59
Query: 733 TLDGHDLKSLQVKWL---RTQIGMVGQEPILFA-TSILENVLMGKENATMKEAVAAC--- 785
L+G D+ L+ K L R +IGM+ Q L ++LENVL G+ K +
Sbjct: 60 LLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGY--KPTWRSLLGR 117
Query: 786 --KAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALD 843
+ + + +G + R QLSGGQ+QR+A+ARA+ + P ++L DEP ++LD
Sbjct: 118 FSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLD 177
Query: 844 SESESIVQQAIDKISV--GRTTIVIAHRLATVKN-ANTIVVLDQGSVV 888
++ V + +I+ G T I+ H++ K A+ IV L G +V
Sbjct: 178 PKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIV 225
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 134 bits (339), Expect = 2e-31
Identities = 79/236 (33%), Positives = 134/236 (56%), Gaps = 8/236 (3%)
Query: 670 SGKIEFKGVTFAYPSRPE-TVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPT 728
SG I+F+ V Y RPE +L L+ I S+ + +VG +G GKS++ + R +
Sbjct: 1235 SGSIKFEDVVLRY--RPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELE 1292
Query: 729 KGLITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKE--NATMKEAVAACK 786
+G I +DG D+ + LR +G++ Q P+LF+ ++ N+ E +A + E++ +
Sbjct: 1293 RGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESL---E 1349
Query: 787 AASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSES 846
A I LG D +V + G S GQ+Q ++LARA+++ +IL+LDE T+A+D +
Sbjct: 1350 RAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRT 1409
Query: 847 ESIVQQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLERGGA 902
++++Q+ I + T ++IAHRL T+ + + I+VLD G VVE LL G+
Sbjct: 1410 DALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGS 1465
|
Length = 1622 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 123 bits (310), Expect = 2e-31
Identities = 80/237 (33%), Positives = 117/237 (49%), Gaps = 40/237 (16%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
IEL+ V+ Y L L +K G L+G SG GK+T++ LI F P G++
Sbjct: 1 IELENVSKFYGG---FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEI 57
Query: 1374 MIEGVDLREINVKWLRKQTALVGQEPALFAG-TIRDNIALG--NPKASWAEIEEAAEEA- 1429
+++G D+ N+ ++ V Q ALF T+ +NIA G K AEI+E EA
Sbjct: 58 LLDGKDI--TNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEAL 115
Query: 1430 -------YIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSA 1482
Y ++ S QLSGGQ+QR+AIARA++ +VLLLDE A
Sbjct: 116 DLVQLEGYANRKPS---------------QLSGGQQQRVAIARALVNEPKVLLLDEPLGA 160
Query: 1483 LDLESEKHVQDALRKVSKR--ATTIVVAHRLSTIREA----NMIAVVRDGAVVEYGS 1533
LDL+ K +Q L+++ K T + V H EA + IAV+ G + + G+
Sbjct: 161 LDLKLRKDMQLELKRLQKELGITFVFVTHDQE---EALTMSDRIAVMNKGKIQQIGT 214
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 120 bits (305), Expect = 3e-31
Identities = 56/218 (25%), Positives = 99/218 (45%), Gaps = 48/218 (22%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
IE + ++ Y + L ++L + + L+G +G GK+T+ +I P G I
Sbjct: 1 IEVRNLSKRYGKKT---ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEI 57
Query: 733 TLDGHDLKSLQVKWLRTQIGMVGQEPILFAT-SILENVLMGKENATMKEAVAACKAASAH 791
+ G D+K + R +IG + +EP L+ ++ EN+
Sbjct: 58 KVLGKDIKKEPEEVKR-RIGYLPEEPSLYENLTVRENL---------------------- 94
Query: 792 SFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQ 851
+LSGG KQR+ALA+A++ DP +L+LDEPTS LD ES
Sbjct: 95 -------------------KLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFW 135
Query: 852 QAIDKISVGRTTIVIA-HRLATVKN-ANTIVVLDQGSV 887
+ + ++ TI+++ H L + + + +L+ G +
Sbjct: 136 ELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 6e-31
Identities = 75/248 (30%), Positives = 134/248 (54%), Gaps = 22/248 (8%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
IE++ ++ TYP+ LKD L + G VAL+G SG+GKST++ + +P G V
Sbjct: 1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSV 58
Query: 1374 MIEGVDLREINVKWL---RKQTALVGQEPALFAG-TIRDNIALG--NPKASWAEIEEAAE 1427
+I+G D+ ++ K L R+Q ++ Q+ L ++ +N+ G +++W +
Sbjct: 59 LIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFP 118
Query: 1428 EAYIHKFISSLPQGYETQVGESGV------QLSGGQKQRIAIARAILKGSRVLLLDEASS 1481
+ + +++L +VG QLSGGQ+QR+AIARA+++ +++L DE +
Sbjct: 119 KEEKQRALAAL-----ERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVA 173
Query: 1482 ALDLESEKHVQDALRKVSKR--ATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLL 1538
+LD S + V D L+++++ T IV H++ RE A+ I ++DG +V G L
Sbjct: 174 SLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAELT 233
Query: 1539 ASHLNGVY 1546
L+ +Y
Sbjct: 234 DEVLDEIY 241
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 7e-31
Identities = 63/222 (28%), Positives = 102/222 (45%), Gaps = 46/222 (20%)
Query: 674 EFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLIT 733
E + ++ Y R +L L+L I + + + ++G +G GKST+ + P+ G I
Sbjct: 1 EVENLSVGYGGR---TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEIL 57
Query: 734 LDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAAS-AHS 792
LDG DL SL K L +I V Q A+ A A
Sbjct: 58 LDGKDLASLSPKELARKIAYVPQ------------------------ALELLGLAHLADR 93
Query: 793 FISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQ 852
+EL SGG++QR+ LARA+ ++P ILLLDEPTS LD + + +
Sbjct: 94 PFNEL---------------SGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLE 138
Query: 853 AIDKI--SVGRTTIVIAHRLA-TVKNANTIVVLDQGSVVEIG 891
+ ++ G+T +++ H L + A+ +++L G +V G
Sbjct: 139 LLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 9e-31
Identities = 75/259 (28%), Positives = 128/259 (49%), Gaps = 34/259 (13%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
IE+K ++ TYP LKD L++ G MVA++G SG+GKST++ + DP G++
Sbjct: 4 IEVKNLSKTYPGG--HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEI 61
Query: 1374 MIEGVDLREINVKWLRK---QTALVGQEPALFAG-TIRDNIALG--------------NP 1415
+ GV + ++ K LRK ++ Q+ L ++ +N+ LG
Sbjct: 62 LFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFS 121
Query: 1416 KASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLL 1475
K A+ +A E I + LSGGQ+QR+AIARA+++ +++L
Sbjct: 122 KEDKAQALDALERVGILDK-------AYQRAS----TLSGGQQQRVAIARALVQQPKIIL 170
Query: 1476 LDEASSALDLESEKHVQDALRKVSKR--ATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYG 1532
DE ++LD ES K V D L+ +++ T IV H++ ++ A+ I ++ G +V G
Sbjct: 171 ADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDG 230
Query: 1533 SHETLLASHLNGVYASLVR 1551
L L+ +Y + +
Sbjct: 231 PASELTDEALDEIYGNEIS 249
|
Length = 258 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 124 bits (313), Expect = 1e-30
Identities = 76/233 (32%), Positives = 128/233 (54%), Gaps = 18/233 (7%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
+E K V ++ S +L+ +NL I + + L+G SG GKST+ +I +PT G I
Sbjct: 4 LELKNVRKSFGS---FEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEI 60
Query: 733 TLDGHDLKSLQVKWLRTQIGMVGQEPILFAT-SILENVLMGKENATMKEAVAACKAASAH 791
+DG D+ L + + I MV Q L+ ++ EN+ G + + +A +
Sbjct: 61 LIDGRDVTDLPPE--KRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEV- 117
Query: 792 SFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQ 851
++L LG + + + QLSGGQ+QR+ALARA+++ P++ LLDEP S LD++ +++
Sbjct: 118 ---AKL-LGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMR 173
Query: 852 QAIDKI--SVGRTTIVIAHRLA---TVKNANTIVVLDQGSVVEIGNHRQLLER 899
I K+ +G TTI + H T+ A+ IVV++ G + ++G +L ER
Sbjct: 174 SEIKKLHERLGTTTIYVTHDQVEAMTL--ADRIVVMNDGRIQQVGTPLELYER 224
|
Length = 338 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 120 bits (304), Expect = 2e-30
Identities = 70/233 (30%), Positives = 118/233 (50%), Gaps = 18/233 (7%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
IE + V+ Y V L ++L I + L+G SG GK+T+ LI F PT G I
Sbjct: 1 IELENVSKFYGG---FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEI 57
Query: 733 TLDGHDLKSLQVKWLRTQIGMVGQEPILFA-TSILENVLMGKENATMKEAVAACKAASAH 791
LDG D+ +L + + V Q LF ++ EN+ G + +A + A A
Sbjct: 58 LLDGKDITNLPPH--KRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEAL 115
Query: 792 SFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQ 851
+ + + +QLSGGQ+QR+A+ARA++ +P++LLLDEP ALD + +Q
Sbjct: 116 DLV-----QLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQ 170
Query: 852 QAIDKI--SVGRTTIVIAHRLA---TVKNANTIVVLDQGSVVEIGNHRQLLER 899
+ ++ +G T + + H T+ ++ I V+++G + +IG ++ E
Sbjct: 171 LELKRLQKELGITFVFVTHDQEEALTM--SDRIAVMNKGKIQQIGTPEEIYEE 221
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 4e-30
Identities = 75/218 (34%), Positives = 110/218 (50%), Gaps = 23/218 (10%)
Query: 1330 TVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLR 1389
L D L+V GS+VAL+G SGSGKST++ +I P+ G++ + G D ++ +
Sbjct: 14 QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHAR--D 71
Query: 1390 KQTALVGQEPALFAG-TIRDNIALG------NPKASWAEIEEAAEEAYIHKFISSLPQGY 1442
++ V Q ALF T+RDNIA G A +EE E + P
Sbjct: 72 RKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPN-- 129
Query: 1443 ETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRA 1502
QLSGGQ+QR+A+ARA+ +VLLLDE ALD + K ++ LRK+
Sbjct: 130 ---------QLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEV 180
Query: 1503 --TTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETL 1537
TT+ V H E A+ I V+ +G + + GS + +
Sbjct: 181 HVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEV 218
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 122 bits (309), Expect = 5e-30
Identities = 76/241 (31%), Positives = 124/241 (51%), Gaps = 39/241 (16%)
Query: 1314 IELKMVTFTYP-SRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGK 1372
IELK ++ +P + L + L + G + ++G SG+GKST+I I P G+
Sbjct: 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGR 61
Query: 1373 VMIEGVDLREINVKWL---RKQTALVGQEPALFAG-TIRDNIAL-----GNPKASWAEIE 1423
V+++G DL ++ K L R+Q ++ Q L + T+ DN+AL G PK AEI+
Sbjct: 62 VLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPK---AEIK 118
Query: 1424 EAAEE--------AYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLL 1475
E ++ + QLSGGQKQR+AIARA+ +VLL
Sbjct: 119 ARVTELLELVGLSDKADRYPA---------------QLSGGQKQRVAIARALASNPKVLL 163
Query: 1476 LDEASSALDLESEKHVQDALRKVSKR-ATTIV-VAHRLSTIRE-ANMIAVVRDGAVVEYG 1532
DEA+SALD + + + + L+ +++ TIV + H + ++ + +AV+ G +VE G
Sbjct: 164 CDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQG 223
Query: 1533 S 1533
+
Sbjct: 224 T 224
|
Length = 343 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 6e-30
Identities = 79/245 (32%), Positives = 120/245 (48%), Gaps = 32/245 (13%)
Query: 673 IEFKGVTFAYPSRPETV-ILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGL 731
+ + ++ Y L +++L I +TL +VG SG GKST+ L+ P+ G
Sbjct: 4 LSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGS 63
Query: 732 ITLDGHDLKSLQ-VKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASA 790
I LDG L + K + MV Q+P +S+ N T+ ++ +
Sbjct: 64 ILLDGKPLAPKKRAKAFYRPVQMVFQDPY---SSL--NPRR-----TVGRILS--EPLRP 111
Query: 791 HSFISELPLGYD--TQVG-------DRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSA 841
H + QVG R +LSGGQ+QRIA+ARA+I +P++L+LDEPTSA
Sbjct: 112 HGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSA 171
Query: 842 LDSESESIVQQAID-----KISVGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQ 895
LD S+ Q ++ K G T + I+H LA V++ + I V+D G +VEIG +
Sbjct: 172 LDV---SVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEE 228
Query: 896 LLERG 900
LL
Sbjct: 229 LLSHP 233
|
Length = 252 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 8e-30
Identities = 64/226 (28%), Positives = 113/226 (50%), Gaps = 32/226 (14%)
Query: 674 EFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLIT 733
E + +T +Y P +L ++ + + LA+VG +G GKST+ I PT G I
Sbjct: 1 EVEDLTVSYGGHP---VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIR 57
Query: 734 LDGHDLKSLQVKWLRTQIGMVGQEPIL---FATSILENVLMG---KENATMKEAVAACKA 787
+ G ++ R +IG V Q + F S+ + VLMG + + + A
Sbjct: 58 VFG-----KPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAK 112
Query: 788 A-SAHSF--ISEL---PLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSA 841
A +SEL +G +LSGGQ+QR+ LARA+++DP +LLLDEP +
Sbjct: 113 VDEALERVGLSELADRQIG----------ELSGGQQQRVLLARALVQDPDLLLLDEPFAG 162
Query: 842 LDSESESIVQQAIDKI-SVGRTTIVIAHRLATV-KNANTIVVLDQG 885
+D +++ + + + ++ G T +V+ H L V + + +++L++
Sbjct: 163 VDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT 208
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 1e-29
Identities = 77/237 (32%), Positives = 126/237 (53%), Gaps = 31/237 (13%)
Query: 1332 LKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLR-- 1389
+ D L V+ G + ++G SGSGKST++ L+ R +P +G+++++G D+ +++ LR
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELREL 103
Query: 1390 --KQTALVGQEPALFAG-TIRDNIAL-----GNPKASWAEIEEAAEEAY----IHKFISS 1437
K+ ++V Q AL T+ +N+A G PK AE EE A EA + +
Sbjct: 104 RRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPK---AEREERALEALELVGLEGYADK 160
Query: 1438 LPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRK 1497
P +LSGG +QR+ +ARA+ +LL+DEA SALD +QD L +
Sbjct: 161 YPN-----------ELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLE 209
Query: 1498 VSKR-ATTIV-VAHRLS-TIREANMIAVVRDGAVVEYGSHETLLASHLNGVYASLVR 1551
+ + TIV + H L +R + IA+++DG +V+ G+ E +L + N VR
Sbjct: 210 LQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLNPANDYVRDFVR 266
|
Length = 386 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 2e-29
Identities = 80/252 (31%), Positives = 130/252 (51%), Gaps = 49/252 (19%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
IE++ VT ++ R +L L V G ++A++GGSGSGKST++ LI P++G++
Sbjct: 9 IEVRGVTKSFGDR---VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEI 65
Query: 1374 MIEGVDLREINVKWL---RKQTALVGQEPALFAG-TIRDNIAL------GNPKASWAEIE 1423
+I+G D+ +++ + L RK+ ++ Q+ ALF+ T+ +N+A P+ + I
Sbjct: 66 LIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPE---SLIR 122
Query: 1424 EAAEEAYIHKFISSLPQGYETQVGESGV-------QLSGGQKQRIAIARAILKGSRVLLL 1476
E + VG G +LSGG ++R+A+ARAI +L L
Sbjct: 123 ELVLMK-LE------------LVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFL 169
Query: 1477 DEASSALD-------LESEKHVQDALRKVSKRATTIVVAHRLSTIRE-ANMIAVVRDGAV 1528
DE +S LD E + + DAL T I+V H L ++ A+ +AV+ DG V
Sbjct: 170 DEPTSGLDPISAGVIDELIRELNDAL-----GLTVIMVTHDLDSLLTIADRVAVLADGKV 224
Query: 1529 VEYGSHETLLAS 1540
+ G+ E LLAS
Sbjct: 225 IAEGTPEELLAS 236
|
Length = 263 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 120 bits (304), Expect = 2e-29
Identities = 73/231 (31%), Positives = 117/231 (50%), Gaps = 25/231 (10%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
I V + + L ++L I S + +AL+G SG GKST+ +I P G I
Sbjct: 3 IRINNVKKRFGAFGA---LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRI 59
Query: 733 TLDGHDLKSLQVKWLRTQ---IGMVGQEPILFA-TSILENVLMG----KENATMKEAVAA 784
L+G L V L + +G V Q LF ++ +N+ G KE + E
Sbjct: 60 RLNGRVLF--DVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEI--- 114
Query: 785 CKAASAHSFISELPLGYDTQVGDR-GTQLSGGQKQRIALARAMIKDPRILLLDEPTSALD 843
A + + L + DR QLSGGQ+QR+ALARA+ +P++LLLDEP ALD
Sbjct: 115 --RARVEELLRLVQLE---GLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALD 169
Query: 844 SESESIVQQAIDKI--SVGRTTIVIAHRLA-TVKNANTIVVLDQGSVVEIG 891
++ +++ + K+ +G TT+ + H ++ A+ +VVL+QG + ++G
Sbjct: 170 AKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVG 220
|
Length = 345 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 117 bits (294), Expect = 3e-29
Identities = 72/219 (32%), Positives = 117/219 (53%), Gaps = 17/219 (7%)
Query: 687 ETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKW 746
L +NL +P+ +AL+G SG GKST+ +I P G I L+G D + +
Sbjct: 12 SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHAR- 70
Query: 747 LRTQIGMVGQEPILFA-TSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQV 805
+IG V Q LF ++ +N+ G E +++ A A + + L +
Sbjct: 71 -DRKIGFVFQHYALFKHLTVRDNIAFGLE---IRKHPKAKIKARVEELLELVQL---EGL 123
Query: 806 GDR-GTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDS----ESESIVQQAIDKISVG 860
GDR QLSGGQ+QR+ALARA+ +P++LLLDEP ALD+ E S +++ D++ V
Sbjct: 124 GDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHV- 182
Query: 861 RTTIVIAHRLA-TVKNANTIVVLDQGSVVEIGNHRQLLE 898
TT+ + H ++ A+ IVV+ G + +IG+ ++ +
Sbjct: 183 -TTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYD 220
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 4e-29
Identities = 68/227 (29%), Positives = 111/227 (48%), Gaps = 29/227 (12%)
Query: 688 TVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWL 747
TV + ++L + + ++G SG GKST+ I R +PT G + +DG D+ ++ K L
Sbjct: 37 TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKEL 96
Query: 748 ----RTQIGMVGQEPILFA-TSILENVLMGKENATMKEAVAACKAASA------HSFISE 796
R +I MV Q L ++LENV G E + A +AA A + +
Sbjct: 97 RELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHK 156
Query: 797 LPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALD----SESESIVQQ 852
P +LSGG +QR+ LARA+ DP ILL+DE SALD E + + +
Sbjct: 157 YP-----------DELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLR 205
Query: 853 AIDKISVGRTTIVIAHRLA-TVKNANTIVVLDQGSVVEIGNHRQLLE 898
++ +T + I H L ++ + I ++ G +V++G ++L
Sbjct: 206 LQAEL--QKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILT 250
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 117 bits (296), Expect = 5e-29
Identities = 64/239 (26%), Positives = 116/239 (48%), Gaps = 42/239 (17%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
I+ + V+F+YP+ E L++++ I + +A++G +G GKST+ ++ P G I
Sbjct: 8 IKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEI 66
Query: 733 TLDGHDLKSLQVKWLRTQIGMVGQEP------------ILFATSILENVLMGKENATMKE 780
+DG + +K +R +IG++ Q P I F LEN + + MK+
Sbjct: 67 KIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFG---LENKKVPPKK--MKD 121
Query: 781 AVAACKAASAHSFISELPLGYDTQVG-----DRGTQ-LSGGQKQRIALARAMIKDPRILL 834
I + +VG D+ Q LSGGQKQR+A+A + +P I++
Sbjct: 122 ------------IIDD----LAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIII 165
Query: 835 LDEPTSALDSESESIVQQAIDKI--SVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIG 891
DE TS LD + + +++ + + + +T I I H + A+ ++V +G ++ G
Sbjct: 166 FDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQG 224
|
Length = 271 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 117 bits (294), Expect = 5e-29
Identities = 72/227 (31%), Positives = 117/227 (51%), Gaps = 18/227 (7%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
IE + V+ + L ++L IPS + +AL+G SG GK+T+ LI P G I
Sbjct: 3 IEVRNVSKRFGDFVA---LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTI 59
Query: 733 TLDGHDLKSLQVKWLRTQIGMVGQEPILFA-TSILENVLMG-KENATMKEAVAACKAASA 790
G D + V+ +G V Q LF ++ +NV G + + A A
Sbjct: 60 LFGGEDATDVPVQ--ERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKV 117
Query: 791 HSFISELPLGYDTQVGDR-GTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDS----E 845
H + + L + DR QLSGGQ+QR+ALARA+ +P++LLLDEP ALD+ E
Sbjct: 118 HELLKLVQL---DWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKE 174
Query: 846 SESIVQQAIDKISVGRTTIVIAHRLA-TVKNANTIVVLDQGSVVEIG 891
+++ D++ V TT+ + H ++ A+ +VV+++G + ++G
Sbjct: 175 LRRWLRRLHDELHV--TTVFVTHDQEEALEVADRVVVMNKGRIEQVG 219
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 7e-29
Identities = 79/231 (34%), Positives = 113/231 (48%), Gaps = 23/231 (9%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
I + V + + L D L +K G +VAL+G SG+GKST++ +I P+ G++
Sbjct: 3 IRINNVKKRFGAFG---ALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRI 59
Query: 1374 MIEGVDLREINVKWLRKQTALVG---QEPALFAG-TIRDNIALG----NPKASWAEIEEA 1425
+ G L +V L + VG Q ALF T+ DNIA G + S AEI
Sbjct: 60 RLNGRVL--FDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRAR 117
Query: 1426 AEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDL 1485
EE + L Y Q LSGGQ+QR+A+ARA+ +VLLLDE ALD
Sbjct: 118 VEELLRLVQLEGLADRYPAQ-------LSGGQRQRVALARALAVEPKVLLLDEPFGALDA 170
Query: 1486 ESEKHVQDALRKVSKRA--TTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGS 1533
+ K ++ LRK+ R TT+ V H E A+ + V+ G + + G
Sbjct: 171 KVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGP 221
|
Length = 345 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 112 bits (281), Expect = 8e-29
Identities = 50/129 (38%), Positives = 69/129 (53%), Gaps = 13/129 (10%)
Query: 715 STVFALIERFYDPTKGLITLDGHDLKSL-QVKWLRTQIGMVGQEPILFAT-SILENVLMG 772
ST+ LI PT G I LDG D L K LR +IG+V Q+P LF ++ EN+ G
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 773 -KENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPR 831
++ A A + F+ + LSGGQKQR+A+ARA++K P+
Sbjct: 61 LRDKEADARAEEALERVGLPDFLDR----------EPVGTLSGGQKQRVAIARALLKKPK 110
Query: 832 ILLLDEPTS 840
+LLLDEPT+
Sbjct: 111 LLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 1e-28
Identities = 55/216 (25%), Positives = 107/216 (49%), Gaps = 48/216 (22%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
IE++ ++ Y + L D L V+ G + L+G +G+GK+T+I +I P+ G++
Sbjct: 1 IEVRNLSKRYGKKT---ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEI 57
Query: 1374 MIEGVDLREINVKWLRKQTALVGQEPALFAG-TIRDNIALGNPKASWAEIEEAAEEAYIH 1432
+ G D+++ + ++++ + +EP+L+ T+R+N+
Sbjct: 58 KVLGKDIKK-EPEEVKRRIGYLPEEPSLYENLTVRENL---------------------- 94
Query: 1433 KFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQ 1492
+LSGG KQR+A+A+A+L +L+LDE +S LD ES +
Sbjct: 95 -------------------KLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFW 135
Query: 1493 DALRKVSKRATTIVVA-HRLSTIRE-ANMIAVVRDG 1526
+ LR++ K TI+++ H L + +A++ +G
Sbjct: 136 ELLRELKKEGKTILLSSHILEEAERLCDRVAILNNG 171
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 1e-28
Identities = 77/229 (33%), Positives = 119/229 (51%), Gaps = 26/229 (11%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
+EL+ VT + VT L D L + G V L+G SG GK+T + +I +P G++
Sbjct: 1 VELENVTKRFG---NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRI 57
Query: 1374 MIEGVDLREINVKWLRKQTALVGQEPALFAG-TIRDNIALG-----NPKASWAE-IEEAA 1426
I G D+ ++ K + A+V Q AL+ T+ DNIA G PK E + E A
Sbjct: 58 YIGGRDVTDLPPK--DRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVA 115
Query: 1427 EEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLE 1486
E I + P+ QLSGGQ+QR+A+ RAI++ +V L+DE S LD +
Sbjct: 116 ELLQIEHLLDRKPK-----------QLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAK 164
Query: 1487 SEKHVQDALRKVSKR--ATTIVVAH-RLSTIREANMIAVVRDGAVVEYG 1532
++ L+++ +R TTI V H ++ + A+ IAV+ DG + + G
Sbjct: 165 LRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 1e-28
Identities = 78/222 (35%), Positives = 110/222 (49%), Gaps = 34/222 (15%)
Query: 664 RKLSSVSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIER 723
+K ++ K+ + V+ Y E L ++L IP A +G SG GKST + R
Sbjct: 11 KKATATEIKMRARDVSVFYG---EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNR 67
Query: 724 FYDP-----TKGLITLDGHDL--KSLQVKWLRTQIGMVGQEPILFATSILENVLMG---- 772
D G ITLDG D+ L V LR ++GMV Q+P F SI ENV G
Sbjct: 68 MNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIH 127
Query: 773 ---KENATMKEAV-AACKAASAHSFISELPLGYDTQVGDR----GTQLSGGQKQRIALAR 824
+ A + E V + + A G +V DR GT LSGGQ+QR+ +AR
Sbjct: 128 GLARSKAELDEIVETSLRKA-----------GLWEEVKDRLHEPGTGLSGGQQQRLCIAR 176
Query: 825 AMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVI 866
A+ P ++L+DEP SALD + + V++ ID++ TIVI
Sbjct: 177 AIAVSPEVILMDEPCSALDPIATAKVEELIDELR-QNYTIVI 217
|
Length = 267 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 1e-28
Identities = 66/228 (28%), Positives = 114/228 (50%), Gaps = 32/228 (14%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
IE + +T +Y +RP +L ++L + + AL+G +G GKST+ I P+ G I
Sbjct: 5 IEVENLTVSYGNRP---VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEI 61
Query: 733 TLDGHDLKSLQVKWLRTQIGMVGQEPIL---FATSILENVLMG---------KENATMKE 780
+ G ++ + K LR IG V Q+ + F ++ + VL+G + N KE
Sbjct: 62 KIFGKPVRKRR-KRLR--IGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKE 118
Query: 781 AV-AACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPT 839
V A + D Q+G +LSGGQKQR+ LARA+ ++P +LLLDEP
Sbjct: 119 KVDEALERVGMEDLR-------DRQIG----ELSGGQKQRVLLARALAQNPDLLLLDEPF 167
Query: 840 SALDSESESIVQQAIDKI-SVGRTTIVIAHRLATV-KNANTIVVLDQG 885
+ +D + + + ++ G+T +++ H L V + ++ L++
Sbjct: 168 TGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRH 215
|
Length = 254 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 116 bits (291), Expect = 2e-28
Identities = 75/244 (30%), Positives = 130/244 (53%), Gaps = 3/244 (1%)
Query: 666 LSSVSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFY 725
L + G+I+ + Y + + V L+ + I + + + G +G GKS++ R
Sbjct: 13 LVGLGGEIKIHDLCVRYENNLKPV-LKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMV 71
Query: 726 DPTKGLITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAAC 785
D G I +DG D+ L + LR+++ ++ Q+PILF+ SI N L + T A
Sbjct: 72 DIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFN-LDPECKCTDDRLWEAL 130
Query: 786 KAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSE 845
+ A + + LP G D V + G S GQ+Q LARA ++ IL++DE T+++D
Sbjct: 131 EIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMA 190
Query: 846 SESIVQQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLL-ERGGAYH 904
+E+I+Q+ + RT + IAHR++T+ +A+ ++VL +G +VE LL + G +
Sbjct: 191 TENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFA 250
Query: 905 DLVK 908
LV+
Sbjct: 251 SLVR 254
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 112 bits (284), Expect = 2e-28
Identities = 58/221 (26%), Positives = 109/221 (49%), Gaps = 44/221 (19%)
Query: 1315 ELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVM 1374
E++ ++ Y R TVL D L ++ G +V ++G +G+GKST++ + P+ G+++
Sbjct: 1 EVENLSVGYGGR---TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEIL 57
Query: 1375 IEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHKF 1434
++G DL ++ K L ++ A V Q AL E +
Sbjct: 58 LDGKDLASLSPKELARKIAYVPQ-------------AL----------ELLGLAHLADRP 94
Query: 1435 ISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDA 1494
+ L SGG++QR+ +ARA+ + +LLLDE +S LD+ + + +
Sbjct: 95 FNEL---------------SGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLEL 139
Query: 1495 LRKVSKRA--TTIVVAHRLS-TIREANMIAVVRDGAVVEYG 1532
LR++++ T ++V H L+ R A+ + +++DG +V G
Sbjct: 140 LRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 117 bits (297), Expect = 2e-28
Identities = 85/239 (35%), Positives = 126/239 (52%), Gaps = 37/239 (15%)
Query: 673 IEFKGVTFAYPSRPETVI-LRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGL 731
IE K ++ +P T+ L +++L IP+ + ++G SG GKST+ I PT G
Sbjct: 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGR 61
Query: 732 ITLDGHDLKSLQVKWLRT---QIGMVGQE-PILFATSILENV-----LMGKENATMKEAV 782
+ +DG DL +L K LR QIGM+ Q +L + ++ +NV L G A +K V
Sbjct: 62 VLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARV 121
Query: 783 AACKAASAHSFISELPLGYDTQVG-----DR-GTQLSGGQKQRIALARAMIKDPRILLLD 836
L L VG DR QLSGGQKQR+A+ARA+ +P++LL D
Sbjct: 122 TEL-----------LEL-----VGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCD 165
Query: 837 EPTSALDSE-SESIVQQAIDKIS--VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIG 891
E TSALD + SI+ + + I+ +G T ++I H + VK + + V+D G +VE G
Sbjct: 166 EATSALDPATTRSIL-ELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQG 223
|
Length = 343 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 2e-28
Identities = 65/230 (28%), Positives = 121/230 (52%), Gaps = 22/230 (9%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
I+++ V+F+YP+ E LK+ ++ G VA++G +GSGKST+ ++ P G++
Sbjct: 8 IKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEI 66
Query: 1374 MIEGVDLREINVKWLRKQTALVGQEP-ALFAG-TIRDNIALG------NPKASWAEIEEA 1425
I+G+ + + N+K +RK+ ++ Q P F G T+ D+IA G PK I++
Sbjct: 67 KIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDL 126
Query: 1426 AEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDL 1485
A++ + ++ PQ LSGGQKQR+AIA + +++ DE++S LD
Sbjct: 127 AKKVGMEDYLDKEPQ-----------NLSGGQKQRVAIASVLALNPEIIIFDESTSMLDP 175
Query: 1486 ESEKHVQDALRKVSKRA--TTIVVAHRLSTIREANMIAVVRDGAVVEYGS 1533
+ ++ ++ + + K T I + H + A+ + V +G ++ G
Sbjct: 176 KGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGK 225
|
Length = 271 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 2e-28
Identities = 80/244 (32%), Positives = 124/244 (50%), Gaps = 47/244 (19%)
Query: 1310 KPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPN 1369
PL +EL+ ++ ++ + V+ + L + G + L+G SG GK+TV+ LI F P+
Sbjct: 12 SPL-VELRGISKSFDGK---EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD 67
Query: 1370 QGKVMIEGVDL-------REINVKWLRKQTALVGQEPALFAG-TIRDNIALG--NPKASW 1419
G++M++G D+ R +N V Q ALF T+ +N+A G K
Sbjct: 68 SGRIMLDGQDITHVPAENRHVNT---------VFQSYALFPHMTVFENVAFGLRMQKTPA 118
Query: 1420 AEIEEAAEEA----YIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLL 1475
AEI EA + +F P QLSGGQ+QR+AIARA++ +VLL
Sbjct: 119 AEITPRVMEALRMVQLEEFAQRKPH-----------QLSGGQQQRVAIARAVVNKPKVLL 167
Query: 1476 LDEASSALDLESEKHVQDALRKVSKR--ATTIVVAHRLSTIREA-NM---IAVVRDGAVV 1529
LDE+ SALD + K +Q+ L+ + ++ T + V H EA M I V+RDG +
Sbjct: 168 LDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQ---EEALTMSDRIVVMRDGRIE 224
Query: 1530 EYGS 1533
+ G+
Sbjct: 225 QDGT 228
|
Length = 375 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 115 bits (289), Expect = 3e-28
Identities = 71/228 (31%), Positives = 122/228 (53%), Gaps = 26/228 (11%)
Query: 1328 EVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYD--PN---QGKVMIEGVDL-- 1380
+ LK L ++ + AL+G SG GKST + + R D P+ +G+V+++G D+
Sbjct: 15 DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYK 74
Query: 1381 REINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKA----SWAEIEEAAEEAYIHKFIS 1436
+I+V LRK+ +V Q+P F +I DN+A G P+ +++E E+
Sbjct: 75 SDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYG-PRTHGIKDKKKLDEIVEK-------- 125
Query: 1437 SLPQG-----YETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHV 1491
SL + ++ +S + LSGGQ+QR+ IARA+ VLL+DE +SALD S +
Sbjct: 126 SLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKI 185
Query: 1492 QDALRKVSKRATTIVVAHRL-STIREANMIAVVRDGAVVEYGSHETLL 1538
++ ++++ K T ++V H + R ++ A +G +VE+G L
Sbjct: 186 EELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDLF 233
|
Length = 250 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 113 bits (286), Expect = 4e-28
Identities = 70/231 (30%), Positives = 116/231 (50%), Gaps = 19/231 (8%)
Query: 1331 VLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRK 1390
LK+ L+V+ G ++G +GSGKS ++ I F P+ GK+++ G D+ N+ ++
Sbjct: 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDI--TNLPPEKR 71
Query: 1391 QTALVGQEPALFAG-TIRDNIALG--NPKASWAEIEEAAEEAYIHKF--ISSLPQGYETQ 1445
+ V Q ALF T+ NIA G K EIE E I + I L
Sbjct: 72 DISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLE--IAEMLGIDHLLNRKPET 129
Query: 1446 VGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRA--T 1503
LSGG++QR+AIARA++ ++LLLDE SALD+ +++ +++ L+K+ K T
Sbjct: 130 -------LSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVT 182
Query: 1504 TIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLASHLNGVYASLVRAE 1553
+ V H A+ +A++ +G +++ G E + N A +
Sbjct: 183 VLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKKPKNEFVAEFLGFN 233
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 4e-28
Identities = 75/243 (30%), Positives = 124/243 (51%), Gaps = 27/243 (11%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGL- 731
IE + + Y E ++++ + I ++ A++G SG GK+T+ I R D G
Sbjct: 4 IEIENFSAYYG---EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFR 60
Query: 732 ----ITLDGHDL--KSLQVKWLRTQIGMVGQEPILFATSILENVLMG------KENATMK 779
I G D+ L V R ++GMV Q+P F SI +NV G K +
Sbjct: 61 VEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLD 120
Query: 780 EAVAAC--KAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDE 837
V KAA SEL GT+LSGGQ+QR+ +ARA+ +P ++LLDE
Sbjct: 121 RIVEESLKKAALWDEVKSEL--------NKPGTRLSGGQQQRLCIARALAVEPEVILLDE 172
Query: 838 PTSALDSESESIVQQAIDKISVGRTTIVIAHRLA-TVKNANTIVVLDQGSVVEIGNHRQL 896
PTSALD + +++ ++++S T +++ H + ++ A+ I + +G ++E G R++
Sbjct: 173 PTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREI 232
Query: 897 LER 899
+ER
Sbjct: 233 VER 235
|
Length = 250 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 4e-28
Identities = 61/193 (31%), Positives = 98/193 (50%), Gaps = 17/193 (8%)
Query: 682 YPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDG----H 737
YP PE +L+ LN + LAL+G +G GKST+ + P G + +DG +
Sbjct: 1 YPGGPE--VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDY 58
Query: 738 DLKSLQVKWLRTQIGMVGQEP--ILFATSILENVLMGKENATMKEAVAACKAASAHSFIS 795
K L ++ R ++G+V Q+P LFA + ++V G N + EA + A + +
Sbjct: 59 SRKGL-LER-RQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVG 116
Query: 796 ELPLGYDTQVGDRGTQ-LSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAI 854
L +R T LSGG+K+R+A+A A+ P +LLLDEPT+ LD + +
Sbjct: 117 ASGLR------ERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAIL 170
Query: 855 DKISVGRTTIVIA 867
++ T+VI+
Sbjct: 171 RRLRAEGMTVVIS 183
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 5e-28
Identities = 79/246 (32%), Positives = 121/246 (49%), Gaps = 33/246 (13%)
Query: 671 GKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYD---- 726
GKI K + Y L+ +NL I ++ AL+G SG GKST + R D
Sbjct: 2 GKISVKDLDLFYGDFQA---LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPS 58
Query: 727 -PTKGLITLDGHDL--KSLQVKWLRTQIGMVGQEPILFATSILENVLMG------KENAT 777
+G + LDG D+ + V LR ++GMV Q+P F SI +NV G K+
Sbjct: 59 VKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKK 118
Query: 778 MKEAVAACKAASAHSFISELPLGYDTQVGDR----GTQLSGGQKQRIALARAMIKDPRIL 833
+ E V +A + + +V DR LSGGQ+QR+ +ARA+ +P +L
Sbjct: 119 LDEIVEKSLKGAA---LWD-------EVKDRLKKSALGLSGGQQQRLCIARALAVEPEVL 168
Query: 834 LLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRL--ATVKNANTIVVLDQGSVVEIG 891
L+DEPTSALD S +++ I ++ T +++ H + A+ + T L+ G +VE G
Sbjct: 169 LMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLN-GEIVEFG 227
Query: 892 NHRQLL 897
+ L
Sbjct: 228 DTVDLF 233
|
Length = 250 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 6e-28
Identities = 76/223 (34%), Positives = 116/223 (52%), Gaps = 25/223 (11%)
Query: 691 LRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPT---KGLITLDGHDLKSLQVKWL 747
L +N+ I +K AL+G SG GKST R D GL+ ++G D+K+ V L
Sbjct: 18 LFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVAL 77
Query: 748 RTQIGMVGQEPILFATSILENV-----LMGK-ENATMKEA-VAACKAASAHSFISELPLG 800
R +GMV Q+P +F SI EN+ L G +N +EA V C +G
Sbjct: 78 RKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQK----------VG 127
Query: 801 YDTQVGDRGTQ----LSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDK 856
+V D+ Q LSGGQ+QR+ +ARA+ P++LLLDEPTSALD S ++++ + +
Sbjct: 128 LFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKE 187
Query: 857 ISVGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLE 898
+S + I++ H + K A+ G ++E G ++ E
Sbjct: 188 LSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFE 230
|
Length = 246 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 7e-28
Identities = 76/240 (31%), Positives = 113/240 (47%), Gaps = 37/240 (15%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
I + V+ YP E L+D + G V L G SG+GKST++ LI P +GK+
Sbjct: 2 IRFENVSKAYPGGREA--LRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKI 59
Query: 1374 MIEGVDL-----REINVKWLRKQTALVGQEPALFAG-TIRDNIAL-----GNPKASWAEI 1422
++ G DL REI +LR+Q +V Q+ L T+ +N+AL G P EI
Sbjct: 60 LVNGHDLSRLKGREIP--FLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPR---EI 114
Query: 1423 EEAAEEA-----YIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLD 1477
E HK +LP QLSGG++QR+AIARAI+ VLL D
Sbjct: 115 RRRVSEVLDLVGLKHK-ARALP-----------SQLSGGEQQRVAIARAIVNQPAVLLAD 162
Query: 1478 EASSALDLESEKHVQDALRKVSKRATTIVVA-HRLSTIREANM-IAVVRDGAVVEYGSHE 1535
E + LD + + ++++ TT+++A H L + + + DG +V S
Sbjct: 163 EPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDESRG 222
|
Length = 223 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 7e-28
Identities = 67/199 (33%), Positives = 104/199 (52%), Gaps = 11/199 (5%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
IEF VT YP T L +N+ I + + + LVG SG GKST+ LI + PT G I
Sbjct: 1 IEFINVTKTYP--NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTI 58
Query: 733 TLDGHDLKSL---QVKWLRTQIGMVGQEPILFAT-SILENVLMGKENATMKEAVAACKAA 788
++G D+ L + +LR +IG+V Q+ L ++ ENV E + +
Sbjct: 59 RVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVP 118
Query: 789 SAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESES 848
+A +G + +LSGG++QR+A+ARA++ P IL+ DEPT LD ++
Sbjct: 119 AALEL-----VGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTW 173
Query: 849 IVQQAIDKISVGRTTIVIA 867
+ + KI+ TT+V+A
Sbjct: 174 EIMNLLKKINKAGTTVVVA 192
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 8e-28
Identities = 74/294 (25%), Positives = 129/294 (43%), Gaps = 42/294 (14%)
Query: 673 IEFKGVTFAYPSRPETV-ILRSLNLVIPSSKTLALVGTSGGGKST----VFALIERFYDP 727
+E + +T + + V +R ++ + + L +VG SG GKST + L+
Sbjct: 6 LEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRI 65
Query: 728 TKGLITLDGHDLKSLQVKWLR----TQIGMVGQEPILFATSI-----LENVLM------- 771
T G + LDG DL L + +R +I M+ Q+P TS+ + + +
Sbjct: 66 TSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDP---MTSLNPVMTIGDQIREALRLHG 122
Query: 772 -GKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGT-QLSGGQKQRIALARAMIKD 829
G K AV + LP D + DR QLSGG +QR+ +A A+
Sbjct: 123 KGSRAEARKRAVELLEQVG-------LP---DPERRDRYPHQLSGGMRQRVMIAMALALK 172
Query: 830 PRILLLDEPTSALDSESESIVQQAIDKISV--GRTTIVIAHRLATVKN-ANTIVVLDQGS 886
P++L+ DEPT+ALD +++ + + + G + I H L V A+ +VV+ +G
Sbjct: 173 PKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGE 232
Query: 887 VVEIGNHRQLLERGGAYHDLVKLASEAVSQPQSKQKDAKRGIEFSIYEKSVIEV 940
+VE G ++L H + AV + + K + + + ++ V
Sbjct: 233 IVETGPTEEILSNPQ--HPYTRGLLAAVPRLGDE-KIIRLPRRGPLRAEPLLSV 283
|
Length = 539 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 8e-28
Identities = 69/215 (32%), Positives = 115/215 (53%), Gaps = 13/215 (6%)
Query: 1332 LKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWL--- 1388
+ D L + G + ++G SGSGKST + ++ R +P G++ I+G ++ + + L
Sbjct: 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREV 68
Query: 1389 -RKQTALVGQEPALFAG-TIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQV 1446
RK+ +V Q+ ALF TI N +LG W E +E E+A + L YE +
Sbjct: 69 RRKKIGMVFQQFALFPHMTILQNTSLGPELLGWPE-QERKEKALELLKLVGLE-EYEHRY 126
Query: 1447 GESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKR--ATT 1504
+ +LSGG +QR+ +ARA+ +LL+DEA SALD +QD L+K+ T
Sbjct: 127 PD---ELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTI 183
Query: 1505 IVVAHRL-STIREANMIAVVRDGAVVEYGSHETLL 1538
+ + H L IR + I +++ G +V+ G+ + +L
Sbjct: 184 VFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEIL 218
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 8e-28
Identities = 72/222 (32%), Positives = 110/222 (49%), Gaps = 32/222 (14%)
Query: 665 KLSSVSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERF 724
LS +E + + Y + L +++ IP ++ A +G SG GKST+ R
Sbjct: 18 NLSDEQTALEVRNLNLFYG---DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRM 74
Query: 725 YD-----PTKGLITLDGHDL--KSLQVKWLRTQIGMVGQEPILFATSILENVLMG----- 772
D +G I LDG ++ K + V LR ++GMV Q P F SI ENV+ G
Sbjct: 75 NDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQG 134
Query: 773 -KENATMKEAVA-ACKAASAHSFISELPLGYDTQVGDR----GTQLSGGQKQRIALARAM 826
+ EAV + + A+ +D +V DR LSGGQ+QR+ +ARA+
Sbjct: 135 INNRRVLDEAVERSLRGAAL----------WD-EVKDRLHENAFGLSGGQQQRLVIARAI 183
Query: 827 IKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAH 868
+P +LLLDEPTSALD S +++ I ++ T +++ H
Sbjct: 184 AIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTH 225
|
Length = 272 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 9e-28
Identities = 74/232 (31%), Positives = 114/232 (49%), Gaps = 22/232 (9%)
Query: 1312 LGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQG 1371
+ IE++ V+ + L D L + G +VAL+G SGSGK+T++ LI P+ G
Sbjct: 1 MSIEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSG 57
Query: 1372 KVMIEGVDLREINVKWLRKQTALVGQEPALFAG-TIRDNIALG---NPKASW---AEIEE 1424
++ G D ++ V+ + V Q ALF T+ DN+A G P++ AEI
Sbjct: 58 TILFGGEDATDVPVQ--ERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRA 115
Query: 1425 AAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALD 1484
E + L Y Q LSGGQ+QR+A+ARA+ +VLLLDE ALD
Sbjct: 116 KVHELLKLVQLDWLADRYPAQ-------LSGGQRQRVALARALAVEPKVLLLDEPFGALD 168
Query: 1485 LESEKHVQDALRKVSKR--ATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGS 1533
+ K ++ LR++ TT+ V H E A+ + V+ G + + G+
Sbjct: 169 AKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGT 220
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 111 bits (281), Expect = 1e-27
Identities = 59/208 (28%), Positives = 101/208 (48%), Gaps = 33/208 (15%)
Query: 1316 LKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMI 1375
LK ++ + + +L D L ++ G M A++G SGSGKST++ +I + G+V +
Sbjct: 1 LKNISKKFGDK---VILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYL 57
Query: 1376 EGVDLREIN----VKWLRKQTALVGQEPALFAG-TIRDN--IALGNPKASWAEIEEAAEE 1428
G + +N K+ R++ + Q AL T+ +N + L K S E E +E
Sbjct: 58 NGQETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKE 117
Query: 1429 A--------YIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEAS 1480
A + + I L SGG++QR+A+ARAILK ++L DE +
Sbjct: 118 ALEKVGLNLKLKQKIYEL---------------SGGEQQRVALARAILKPPPLILADEPT 162
Query: 1481 SALDLESEKHVQDALRKVSKRATTIVVA 1508
+LD ++ V D L +++ TI++
Sbjct: 163 GSLDPKNRDEVLDLLLELNDEGKTIIIV 190
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 1e-27
Identities = 71/222 (31%), Positives = 110/222 (49%), Gaps = 34/222 (15%)
Query: 666 LSSVSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFY 725
+++ KI+ + + F Y + L+++NL I ++ A +G SG GKST+ R Y
Sbjct: 7 VATAPSKIQVRNLNFYYG---KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMY 63
Query: 726 D--P---TKGLITLDGHDL--KSLQVKWLRTQIGMVGQEPILFATSILENVLMGKE---- 774
+ P +G I LDG ++ + LR ++GMV Q+P F SI +N+ G
Sbjct: 64 ELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEK 123
Query: 775 --NATMKEAV--AACKAASAHSFISELPLGYDTQVGDR----GTQLSGGQKQRIALARAM 826
A M E V A KAA +V D+ G LSGGQ+QR+ +AR +
Sbjct: 124 LSRAEMDERVEWALTKAALW------------NEVKDKLHQSGYSLSGGQQQRLCIARGI 171
Query: 827 IKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAH 868
P +LLLDEP SALD S +++ I ++ T +++ H
Sbjct: 172 AIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTH 213
|
Length = 260 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 2e-27
Identities = 75/225 (33%), Positives = 111/225 (49%), Gaps = 25/225 (11%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
IEF V+ AYP L ++L I + L L G SG GK+T+ L+ P++G +
Sbjct: 2 IEFHNVSKAYPGGVA--ALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQV 59
Query: 733 TLDGHDLKSL---QVKWLRTQIGMVGQE-PILFATSILENVLMGKENATMKEAVAACKAA 788
+ G D+ L Q+ LR +IG+V Q+ +L ++ ENV + E V K
Sbjct: 60 RIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLE-------VRGKKER 112
Query: 789 SAHSFISELPLGYDTQVG--DRG----TQLSGGQKQRIALARAMIKDPRILLLDEPTSAL 842
+ QVG + QLSGG++QR+A+ARA++ P +LL DEPT L
Sbjct: 113 EIQRRVGAAL----RQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNL 168
Query: 843 DSE-SESIVQQAIDKISVGRTTIVIAHRLATVKN-ANTIVVLDQG 885
D + SE I+ G T IV H L+ V A+ +++LD G
Sbjct: 169 DPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDG 213
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 111 bits (281), Expect = 2e-27
Identities = 64/213 (30%), Positives = 107/213 (50%), Gaps = 21/213 (9%)
Query: 691 LRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQ 750
L ++ + + L+G +G GK+T+F LI F PT G + DG D+ L +
Sbjct: 16 LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPH-EIAR 74
Query: 751 IGMVG--QEPILFAT-SILENVLMG-----KENATMKEAVAACKAAS--AHSFISELPLG 800
+G+ Q P LF ++LENV++ + A + A A + + L
Sbjct: 75 LGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLA 134
Query: 801 --YDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSAL-DSESESIVQQAIDKI 857
D G+ LS GQ++R+ +ARA+ DP++LLLDEP + L E+E + + I ++
Sbjct: 135 DLADRPAGE----LSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELA-ELIREL 189
Query: 858 SV-GRTTIVIAHRLATVKN-ANTIVVLDQGSVV 888
G T +++ H + V + A+ + VLDQG V+
Sbjct: 190 RERGITVLLVEHDMDVVMSLADRVTVLDQGRVI 222
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 3e-27
Identities = 70/257 (27%), Positives = 128/257 (49%), Gaps = 24/257 (9%)
Query: 672 KIEFKGVTFAY-PSRP-ETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTK 729
I F V++ Y P E + +N K A+VG +G GKST+ I PT
Sbjct: 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTT 61
Query: 730 GLITLDG----HDLKSLQVKWLRTQIGMVGQ--EPILFATSILENVLMGKENATMKEAVA 783
G +T+D H K ++ +R +IGMV Q E LF ++ ++ G +N M
Sbjct: 62 GTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMN---- 117
Query: 784 ACKAASAHSFISELPLGYDTQVGDRGT-QLSGGQKQRIALARAMIKDPRILLLDEPTSAL 842
++ + LG+ V + Q+SGGQ ++IA+ + +P I++LDEPT+ L
Sbjct: 118 -LDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGL 176
Query: 843 DSESESIVQQAIDKISV--GRTTIVIAHRLATV-KNANTIVVLDQGSVVEIGNHRQL--- 896
D +S+ V + + + +T I+++H + V + A+ ++V+ +GS+V + ++L
Sbjct: 177 DPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKD 236
Query: 897 LERGGAYH----DLVKL 909
++ +H ++V+L
Sbjct: 237 KKKLADWHIGLPEIVQL 253
|
Length = 286 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 117 bits (296), Expect = 3e-27
Identities = 67/226 (29%), Positives = 119/226 (52%), Gaps = 20/226 (8%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
+EL+ ++ ++ V L L V+ G + AL+G +G+GKST++ ++ Y P+ G++
Sbjct: 9 LELRGISKSFGG---VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEI 65
Query: 1374 MIEGVDLREINVK-WLRKQTALVGQEPALFAG-TIRDNIALGNPKAS------WAEIEEA 1425
+I+G + + + L A V QE +L ++ +NI LG +
Sbjct: 66 LIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRR 125
Query: 1426 AEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDL 1485
A E + P +T VG+ LS Q+Q + IARA+ +RVL+LDE ++AL +
Sbjct: 126 ARELLARLGLDIDP---DTLVGD----LSIAQRQMVEIARALSFDARVLILDEPTAALTV 178
Query: 1486 ESEKHVQDALRKVSKRATTIV-VAHRLSTIRE-ANMIAVVRDGAVV 1529
+ + + D +R++ + I+ ++HRL + E A+ I V+RDG VV
Sbjct: 179 KETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVV 224
|
Length = 500 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 4e-27
Identities = 76/254 (29%), Positives = 133/254 (52%), Gaps = 32/254 (12%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
+E++ ++ YP+ LK+ L + G VA++G SG+GKST++ I R +P+ G +
Sbjct: 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSI 59
Query: 1374 MIEGVDLREINVKWLRK---QTALVGQEPALFAG-TIRDNIALG--NPKASWAEI----- 1422
++EG D+ ++ K LRK + ++ Q L T+ +N+ G K +W +
Sbjct: 60 LLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFS 119
Query: 1423 EEAAEEAYIHKFISSLPQGYETQVGESGV------QLSGGQKQRIAIARAILKGSRVLLL 1476
EE E A S+L +VG + QLSGGQ+QR+AIARA+ + ++L
Sbjct: 120 EEDKERAL-----SAL-----ERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILA 169
Query: 1477 DEASSALDLESEKHVQDALRKVSKR--ATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGS 1533
DE ++LD ++ K V D L++++K T I+ H++ ++ A+ I ++ G +V G+
Sbjct: 170 DEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGA 229
Query: 1534 HETLLASHLNGVYA 1547
L L +Y
Sbjct: 230 PSELDDEVLRHIYG 243
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 4e-27
Identities = 69/253 (27%), Positives = 125/253 (49%), Gaps = 26/253 (10%)
Query: 1314 IELKMVTFTYPSRPEV-TVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGK 1372
+ ++ ++ Y L + L+++ G + +VG SGSGKST+ L+ P+ G
Sbjct: 4 LSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGS 63
Query: 1373 VMIEGVDL-REINVKWLRKQTALVGQEP--ALFA-GTIRDNIA-----LGNPKASWAEIE 1423
++++G L + K + +V Q+P +L T+ ++ G K S I
Sbjct: 64 ILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSK-SQQRIA 122
Query: 1424 EAAEEAYIHK-FISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSA 1482
E ++ + F+ P +LSGGQ+QRIAIARA++ ++L+LDE +SA
Sbjct: 123 ELLDQVGLPPSFLDRRP-----------HELSGGQRQRIAIARALIPEPKLLILDEPTSA 171
Query: 1483 LDLESEKHVQDALRKVSKR--ATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLA 1539
LD+ + + + L ++ K T + ++H L+ + + IAV+ +G +VE G E LL+
Sbjct: 172 LDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLS 231
Query: 1540 SHLNGVYASLVRA 1552
+ L+ A
Sbjct: 232 HPSHPYTRELLEA 244
|
Length = 252 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 4e-27
Identities = 65/223 (29%), Positives = 115/223 (51%), Gaps = 14/223 (6%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
+E + VT + L LNL I + + L+G SG GK+T +I +PT G I
Sbjct: 1 VELENVTKRFG---NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRI 57
Query: 733 TLDGHDLKSLQVKWLRTQIGMVGQEPILFA-TSILENVLMGKENATMKEAVAACKAASAH 791
+ G D+ L K I MV Q L+ ++ +N+ G + + + +
Sbjct: 58 YIGGRDVTDLPPK--DRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREV- 114
Query: 792 SFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQ 851
+EL L + + + QLSGGQ+QR+AL RA++++P++ L+DEP S LD++ ++
Sbjct: 115 ---AEL-LQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMR 170
Query: 852 QAIDKI--SVGRTTIVIAH-RLATVKNANTIVVLDQGSVVEIG 891
+ ++ +G TTI + H ++ + A+ I V++ G + +IG
Sbjct: 171 AELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 4e-27
Identities = 70/235 (29%), Positives = 118/235 (50%), Gaps = 23/235 (9%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
IE++ + F Y + LK L + GS AL+G +G+GKST++ + Y P +G+V
Sbjct: 5 IEVEDLHFRYKDGTKA--LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRV 62
Query: 1374 MIEGVDLREINVKWLRKQTALVGQEP--ALFAGTIRDNIALG--NPKASWAEIEEAAEEA 1429
+ G ++ N KW+R + LV Q+P +F+ T+ D++A G N E+E EEA
Sbjct: 63 KVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEA 122
Query: 1430 Y----IHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDL 1485
+ F P LS GQK+R+AIA + V++LDE + LD
Sbjct: 123 LKAVRMWDFRDKPPY-----------HLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDP 171
Query: 1486 ESEKHVQDALRKVSKRATTIVVA-HRLSTIRE-ANMIAVVRDGAVVEYGSHETLL 1538
++ + + L ++ + T++VA H + E A+ + V+++G V+ G L
Sbjct: 172 RGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLT 226
|
Length = 274 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 109 bits (276), Expect = 5e-27
Identities = 63/221 (28%), Positives = 109/221 (49%), Gaps = 41/221 (18%)
Query: 1315 ELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVM 1374
E++ +T +Y P VL+D +VK G +A+VG +G+GKST++ I P G +
Sbjct: 1 EVEDLTVSYGGHP---VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIR 57
Query: 1375 IEGVDLREINVKWLRKQTALVGQEPAL---FAGTIRDNIALG----------NPKASWAE 1421
+ G L + RK+ V Q ++ F ++RD + +G KA A+
Sbjct: 58 VFGKPLEKE-----RKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAK 112
Query: 1422 IEEAAE----EAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLD 1477
++EA E + I +LSGGQ+QR+ +ARA+++ +LLLD
Sbjct: 113 VDEALERVGLSELADRQIG---------------ELSGGQQQRVLLARALVQDPDLLLLD 157
Query: 1478 EASSALDLESEKHVQDALRKVSKRATTI-VVAHRLSTIREA 1517
E + +D ++++ + + LR++ + TI VV H L + E
Sbjct: 158 EPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEY 198
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 6e-27
Identities = 67/212 (31%), Positives = 102/212 (48%), Gaps = 18/212 (8%)
Query: 1332 LKDFCLKVK---GGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLRE----IN 1384
L DF LK+ + + G SG+GKST++ I P+ G +++ G L + IN
Sbjct: 10 LPDFTLKIDFDLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKIN 69
Query: 1385 VKWLRKQTALVGQEPALFAG-TIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYE 1443
+ +++ LV Q+ ALF +R+N+A G + E + +E + L Y
Sbjct: 70 LPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYP 129
Query: 1444 TQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKR-- 1501
Q LSGG+KQR+A+ARA+ +LLLDE SALD + L+++ K
Sbjct: 130 AQ-------LSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLN 182
Query: 1502 ATTIVVAHRLSTI-REANMIAVVRDGAVVEYG 1532
I V H LS A+ I V+ DG + G
Sbjct: 183 IPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 6e-27
Identities = 73/239 (30%), Positives = 124/239 (51%), Gaps = 23/239 (9%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
+E G++F Y +R L ++ + + +AL+G +G GKST+F+L+ R Y +G I
Sbjct: 2 LEVAGLSFRYGARR---ALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQI 58
Query: 733 TLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHS 792
++ GHDL+ L ++G+V Q+P L + L ++N A+ A A +
Sbjct: 59 SVAGHDLRRAPRAALA-RLGVVFQQPTL------DLDLSVRQNLRYHAALHGLSRAEARA 111
Query: 793 FISEL--PLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIV 850
I+EL LG + D+ +L+GG ++R+ +ARA++ P +LLLDEPT LD S + +
Sbjct: 112 RIAELLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAI 171
Query: 851 QQAI------DKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLL-ERGGA 902
+ +SV T H + ++ + +VVL +G V+ G +L GGA
Sbjct: 172 TAHVRALARDQGLSVLWAT----HLVDEIEADDRLVVLHRGRVLADGAAAELRGATGGA 226
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 7e-27
Identities = 52/198 (26%), Positives = 98/198 (49%), Gaps = 20/198 (10%)
Query: 1315 ELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVM 1374
++ ++F+Y E+ L D L + G ++AL G +G+GK+T+ ++ + G ++
Sbjct: 1 RIENISFSYKKGTEI--LDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSIL 58
Query: 1375 IEGVDLREINVKWLRKQTALVGQEP--ALFAGTIRDNIALGNPKAS--WAEIEEAAEEAY 1430
+ G I K RK V Q+ LF ++R+ + LG + + E ++
Sbjct: 59 LNGKP---IKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLD 115
Query: 1431 IHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKH 1490
++ P LSGGQKQR+AIA A+L G +L+ DE +S LD ++ +
Sbjct: 116 LYALKERHPL-----------SLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMER 164
Query: 1491 VQDALRKVSKRATTIVVA 1508
V + +R+++ + ++V
Sbjct: 165 VGELIRELAAQGKAVIVI 182
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 8e-27
Identities = 59/230 (25%), Positives = 110/230 (47%), Gaps = 30/230 (13%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
++ + +T Y + L ++L + L+G +G GK+T+ ++ P+ G I
Sbjct: 1 LQLENLTKRYGKK---RALDGVSLTLGPGMY-GLLGPNGAGKTTLMRILATLTPPSSGTI 56
Query: 733 TLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAAS--- 789
+DG D+ Q + LR +IG + QE ++ N T++E +
Sbjct: 57 RIDGQDVLK-QPQKLRRRIGYLPQEFGVYP------------NFTVREFLDYIAWLKGIP 103
Query: 790 ---AHSFISELPLGYDTQVGDRGT----QLSGGQKQRIALARAMIKDPRILLLDEPTSAL 842
+ + E+ L +GDR LSGG ++R+ +A+A++ DP IL++DEPT+ L
Sbjct: 104 SKEVKARVDEV-LE-LVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGL 161
Query: 843 DSESESIVQQAIDKISVGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIG 891
D E + + ++ R I+ H + V++ N + VL++G +V G
Sbjct: 162 DPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 9e-27
Identities = 67/221 (30%), Positives = 112/221 (50%), Gaps = 26/221 (11%)
Query: 676 KGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLD 735
+ ++F+Y + T IL L+L + + + +AL G +G GK+T+ ++ + G I L+
Sbjct: 3 ENISFSY--KKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLN 60
Query: 736 GHDLKSLQVKWLRTQIGMVGQEP--ILFATSILENVLMGKENATMKEAVAAC--KAASAH 791
G +K+ K R IG V Q+ LF S+ E +L+G + A K +
Sbjct: 61 GKPIKA---KERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLY 117
Query: 792 SFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQ 851
+ PL LSGGQKQR+A+A A++ +L+ DEPTS LD ++ V
Sbjct: 118 ALKERHPL-----------SLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVG 166
Query: 852 QAIDKIS-VGRTTIVIAHR---LATVKNANTIVVLDQGSVV 888
+ I +++ G+ IVI H LA V + +++L G++V
Sbjct: 167 ELIRELAAQGKAVIVITHDYEFLAKV--CDRVLLLANGAIV 205
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 109 bits (273), Expect = 1e-26
Identities = 65/205 (31%), Positives = 102/205 (49%), Gaps = 23/205 (11%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
IE VT TYP L + + G V LVG SG+GKST++ LI + P G +
Sbjct: 1 IEFINVTKTYP--NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTI 58
Query: 1374 MIEGVD---LREINVKWLRKQTALVGQEPALFAG-TIRDNIAL-----GNPKASWAE-IE 1423
+ G D LR + +LR++ +V Q+ L + +N+A G P + +
Sbjct: 59 RVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVP 118
Query: 1424 EAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSAL 1483
A E + +LP +LSGG++QR+AIARAI+ +L+ DE + L
Sbjct: 119 AALELVGLSHKHRALPA-----------ELSGGEQQRVAIARAIVNSPTILIADEPTGNL 167
Query: 1484 DLESEKHVQDALRKVSKRATTIVVA 1508
D ++ + + L+K++K TT+VVA
Sbjct: 168 DPDTTWEIMNLLKKINKAGTTVVVA 192
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 109 bits (276), Expect = 1e-26
Identities = 68/239 (28%), Positives = 112/239 (46%), Gaps = 33/239 (13%)
Query: 689 VILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQV-KWL 747
+ ++L + + + L+G +G GK+T+F LI FY P+ G + G D+ L +
Sbjct: 18 TAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIA 77
Query: 748 RTQIGMVGQEPILFAT-SILENVLMGKENATM------------KEAVAACKAASAHSFI 794
R I Q LF ++LENV +G +E A +A F
Sbjct: 78 RLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEF- 136
Query: 795 SELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSAL-DSESESIVQQA 853
+G LS GQ++R+ +ARA+ P++LLLDEP + L E+E + +
Sbjct: 137 ----VGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELA-EL 191
Query: 854 IDKISV--GRTTIVIAHRLATVKN-ANTIVVLDQGSVV------EIGNHRQLLERGGAY 903
I ++ G T ++I H + V A+ IVVL+ G V+ E+ N+ +++E AY
Sbjct: 192 IRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVRNNPRVIE---AY 247
|
Length = 250 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 1e-26
Identities = 69/224 (30%), Positives = 116/224 (51%), Gaps = 27/224 (12%)
Query: 691 LRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYD-----PTKGLITLDGHDL-KSLQV 744
L+S+NL IP+ + AL+G SG GKST+ + R D G +T+DG D+ ++ V
Sbjct: 19 LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDV 78
Query: 745 KWLRTQIGMVGQEPILFATSILENVLMG------KENATMKEAVAACKAASAHSFISELP 798
LR ++GMV Q+P F SI ENV G K+ + E V +A
Sbjct: 79 ADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAAL------- 131
Query: 799 LGYDTQVGDR----GTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAI 854
+D +V DR LSGGQ+QR+ +AR + +P ++L+DEPTSALD + +++ +
Sbjct: 132 --WD-EVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELM 188
Query: 855 DKISVGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLL 897
+++ T +++ H + + ++ G +VE + + +
Sbjct: 189 EELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIF 232
|
Length = 249 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (275), Expect = 2e-26
Identities = 70/223 (31%), Positives = 126/223 (56%), Gaps = 16/223 (7%)
Query: 1328 EVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYD--PN---QGKVMIEGVDLRE 1382
E +K+ +K+ + A++G SG GK+T++ I R D P +GK+ +G D+ +
Sbjct: 15 EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYD 74
Query: 1383 --INVKWLRKQTALVGQEPALFAGTIRDNIALGNPK----ASWAEIEEAAEEAYIHKFIS 1436
++V RK+ +V Q+P F +I DN+A G P+ S +++ EE+ +
Sbjct: 75 PQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFG-PRIHGVKSKHKLDRIVEESLKK---A 130
Query: 1437 SLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALR 1496
+L ++++ + G +LSGGQ+QR+ IARA+ V+LLDE +SALD + + ++ L
Sbjct: 131 ALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLE 190
Query: 1497 KVSKRATTIVVAHRLS-TIREANMIAVVRDGAVVEYGSHETLL 1538
++S+ T ++V H + IR A+ IA + G ++EYG ++
Sbjct: 191 ELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIV 233
|
Length = 250 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 2e-26
Identities = 63/223 (28%), Positives = 103/223 (46%), Gaps = 34/223 (15%)
Query: 676 KGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLD 735
K ++ + + VIL LNL I K A++G SG GKST+ +I G + L+
Sbjct: 2 KNISKKFGDK---VILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLN 58
Query: 736 GHDLKSLQ----VKWLRTQIGMVGQEPILFAT-SILENVLMG----KENATMKEAVAACK 786
G + L K+ R ++G + Q L ++ EN+ +G K + K
Sbjct: 59 GQETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKR------ 112
Query: 787 AASAHSFISELPLGYDTQVGDRGTQ------LSGGQKQRIALARAMIKDPRILLLDEPTS 840
E +VG LSGG++QR+ALARA++K P ++L DEPT
Sbjct: 113 ---------EKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKPPPLILADEPTG 163
Query: 841 ALDSESESIVQQAIDKI-SVGRTTIVIAHRLATVKNANTIVVL 882
+LD ++ V + ++ G+T I++ H K A+ ++ L
Sbjct: 164 SLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 2e-26
Identities = 76/243 (31%), Positives = 122/243 (50%), Gaps = 29/243 (11%)
Query: 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYD----- 726
KI+ + V F Y + L+ +++ I +A +G SG GKST L R D
Sbjct: 3 KIDARDVNFWYG---DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPAT 59
Query: 727 PTKGLITLDGHDL--KSLQVKWLRTQIGMVGQEPILFATSILENVLMG------KENATM 778
+G I +DG ++ K +QV LR +GMV Q P F SI ENV G K+NA +
Sbjct: 60 RLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFI 119
Query: 779 KEAVA-ACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDE 837
++ V K A+ + + ++ + LSGGQ+QR+ +ARAM P +LL+DE
Sbjct: 120 RQRVEETLKGAALWDEVKD-------KLKESAFALSGGQQQRLCIARAMAVSPSVLLMDE 172
Query: 838 PTSALDSESESIVQQAIDKISVGRTTIVIAHRL---ATVKNANTIVVLDQGSVVEIGNHR 894
P SALD S + V++ I ++ T +++ H + A V + + G +VE + +
Sbjct: 173 PASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYM--GEMVEYDDTK 230
Query: 895 QLL 897
++
Sbjct: 231 KIF 233
|
Length = 250 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 2e-26
Identities = 69/226 (30%), Positives = 115/226 (50%), Gaps = 21/226 (9%)
Query: 687 ETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYD-----PTKGLITLDGHDLKS 741
+ L +++ IP ++ A++G SG GKST I R D +G +T G ++
Sbjct: 51 DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYD 110
Query: 742 LQVK--WLRTQIGMVGQEPILFATSILENVLMG----KENATMKEAV-AACKAASAHSFI 794
V LR +IGMV Q+P F SI +NV G + + E V + + A+ +
Sbjct: 111 ADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEV 170
Query: 795 SELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAI 854
+ Q+ G LSGGQ+QR+ +ARA+ DP ++L+DEP SALD + S ++ I
Sbjct: 171 KD-------QLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLI 223
Query: 855 DKISVGRTTIVIAHRL--ATVKNANTIVVLDQGSVVEIGNHRQLLE 898
++++ T +++ H + A + T V L G +VE + ++ E
Sbjct: 224 EELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKIFE 269
|
Length = 285 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 2e-26
Identities = 63/211 (29%), Positives = 111/211 (52%), Gaps = 6/211 (2%)
Query: 1330 TVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLR 1389
VL++ + G V L+G +GSGKST++ R + +G + I+GV + ++ R
Sbjct: 18 AVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWR 76
Query: 1390 KQTALVGQEPALFAGTIRDNIALGNPKASWA--EIEEAAEEAYIHKFISSLPQGYETQVG 1447
K ++ Q+ +F+GT R N+ +P W+ EI + AEE + I P + +
Sbjct: 77 KAFGVIPQKVFIFSGTFRKNL---DPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLV 133
Query: 1448 ESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVV 1507
+ G LS G KQ + +AR++L +++LLLDE S+ LD + + ++ L++ T I+
Sbjct: 134 DGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILS 193
Query: 1508 AHRLSTIREANMIAVVRDGAVVEYGSHETLL 1538
HR+ + E V+ + V +Y S + LL
Sbjct: 194 EHRIEAMLECQRFLVIEENKVRQYDSIQKLL 224
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 2e-26
Identities = 82/248 (33%), Positives = 118/248 (47%), Gaps = 26/248 (10%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
IE K +TF Y E L ++ + + L+++G +G GKST LI+ + G I
Sbjct: 5 IEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQI 64
Query: 733 TLDGHDLKSLQVKWLRTQIGMVGQEP---ILFATSILENVLMGKEN-----ATMKEAV-A 783
+DG L V +R +IGMV Q P + AT + ++V G EN MKE V
Sbjct: 65 IIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGAT-VEDDVAFGLENKGIPHEEMKERVNE 123
Query: 784 ACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALD 843
A + F P +LSGGQKQR+A+A A+ P+I++LDE TS LD
Sbjct: 124 ALELVGMQDFKEREP-----------ARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLD 172
Query: 844 SESESIVQQAIDKI--SVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLERGG 901
E + + I I T I I H L V ++ ++V+ G V R+L RG
Sbjct: 173 PEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSRGN 232
Query: 902 AYHDLVKL 909
DL++L
Sbjct: 233 ---DLLQL 237
|
Length = 279 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 2e-26
Identities = 73/241 (30%), Positives = 118/241 (48%), Gaps = 30/241 (12%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
+ V F+Y P +L +P+ + +A++G SG GKST+ LI F P G I
Sbjct: 2 LALDDVRFSYGHLPMR-----FDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEI 56
Query: 733 TLDGHDLKSLQVKWLRTQIGMVGQEPILFA-TSILENVLMG-----KENATMKEAV--AA 784
++G D + + M+ QE LFA ++ +N+ +G K NA +E V AA
Sbjct: 57 LINGVDHTASPPA--ERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAA 114
Query: 785 CKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDS 844
+ A F+ LP +LSGGQ+QR+ALAR ++++ ILLLDEP SALD
Sbjct: 115 AQVGLA-GFLKRLP-----------GELSGGQRQRVALARCLVREQPILLLDEPFSALDP 162
Query: 845 ESESIVQQAIDKISV--GRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLERGG 901
+ + + ++ T +++ H A+ +V LD G + G+ ++LL
Sbjct: 163 ALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGKA 222
Query: 902 A 902
+
Sbjct: 223 S 223
|
Length = 231 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 2e-26
Identities = 72/231 (31%), Positives = 125/231 (54%), Gaps = 16/231 (6%)
Query: 1314 IELKMVTFTY-PSRP-EVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQG 1371
I+++ +T Y P E L + ++++ G V L+G +GSGKST+I + P G
Sbjct: 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSG 62
Query: 1372 KVMIEGVDL--REINVKWLRKQTALVGQEP--ALFAGTIRDNIALG--NPKASWAEIEEA 1425
K++I+GVD+ +++ + +RK+ LV Q P LF TI +IA G N S EIE
Sbjct: 63 KIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENR 122
Query: 1426 AEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDL 1485
+ A ++ + YE +S +LSGGQK+R+AIA + ++L+LDE ++ LD
Sbjct: 123 VKRA-----MNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDP 177
Query: 1486 ESEKHVQDALRKVSKR--ATTIVVAHRLSTI-REANMIAVVRDGAVVEYGS 1533
+ + + ++++ K T I+V+H + + + A+ I V+ G G+
Sbjct: 178 KGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGT 228
|
Length = 287 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (273), Expect = 5e-26
Identities = 71/233 (30%), Positives = 115/233 (49%), Gaps = 25/233 (10%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDP---NQ 1370
+E K V+FTYP + L D + GS AL+G +GSGKST+ LI P
Sbjct: 6 VEFKHVSFTYPDSKK-PALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPN 64
Query: 1371 GKVMIEGVDLREINVKWLRKQTALVGQEP-ALFAG-TIRDNIALG--NPKASWAE----I 1422
K+ ++G+ L V +R++ +V Q P F G T+ D++A G N E +
Sbjct: 65 SKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIV 124
Query: 1423 EEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSA 1482
+ + + +I S P LSGGQKQR+AIA + ++++LDE++S
Sbjct: 125 RDVLADVGMLDYIDSEPA-----------NLSGGQKQRVAIAGILAVEPKIIILDESTSM 173
Query: 1483 LDLESEKHVQDALRKVSKRA--TTIVVAHRLSTIREANMIAVVRDGAVVEYGS 1533
LD ++ + +RK+ K+ T I + H + A+ + V+ DG ++ GS
Sbjct: 174 LDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGS 226
|
Length = 282 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 5e-26
Identities = 59/224 (26%), Positives = 105/224 (46%), Gaps = 44/224 (19%)
Query: 673 IEFKGVTFAYPSRPETV---ILRSLNLVIPSSKTLALVGTSGGGKSTVFALI--ERFYDP 727
+ F+ +T S P +L++++ + A++G SG GKST+ + R
Sbjct: 4 LSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLG 63
Query: 728 TKGLITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKA 787
G + ++G L + R IG V Q+ IL T T++E +
Sbjct: 64 VSGEVLINGRPLDK---RSFRKIIGYVPQDDILHPTL------------TVRETL----- 103
Query: 788 ASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESE 847
F ++L RG LSGG+++R+++A ++ +P +L LDEPTS LDS S
Sbjct: 104 ----MFAAKL----------RG--LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSA 147
Query: 848 SIVQQAIDKIS-VGRTTIVIAHRLAT--VKNANTIVVLDQGSVV 888
V + +++ GRT I H+ ++ + + +++L QG V+
Sbjct: 148 LQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVI 191
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 6e-26
Identities = 70/221 (31%), Positives = 110/221 (49%), Gaps = 15/221 (6%)
Query: 690 ILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYD-----PTKGLITLDGHDLKS--L 742
IL +NL I + A +G SG GKST R D KG + +DG D+ S
Sbjct: 20 ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDT 79
Query: 743 QVKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYD 802
V LR ++GMV Q+P F SI +NV G + + + S S +G
Sbjct: 80 NVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTS---VGLW 136
Query: 803 TQVGDR----GTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKIS 858
++GDR +LSGGQ+QR+ +ARA+ P +LL+DEP SALD + ++++ I ++
Sbjct: 137 EELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK 196
Query: 859 VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLE 898
T IV+ H + K ++ + G +VE +++ +
Sbjct: 197 KNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFK 237
|
Length = 251 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 6e-26
Identities = 70/217 (32%), Positives = 108/217 (49%), Gaps = 31/217 (14%)
Query: 1338 KVKGGSM-------VALVGGSGSGKSTVIWLIQRFYDPNQ-----GKVMIEGVDL--REI 1383
+KG M AL+G SGSGKST + + R D G+++ G+D+ +EI
Sbjct: 35 AIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEI 94
Query: 1384 NVKWLRKQTALVGQEPALFAGTIRDNIALGNPKASW---AEIEEAAEEAYIHKFISSLPQ 1440
NV +RK +V Q P FA +I +NI +A ++E E SL Q
Sbjct: 95 NVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVET--------SLKQ 146
Query: 1441 G-----YETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDAL 1495
+ + +S + LSGGQ+QR+ IARAI +LL+DE +SALD S +++ +
Sbjct: 147 AALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETM 206
Query: 1496 RKVSKRATTIVVAHRLS-TIREANMIAVVRDGAVVEY 1531
++ K T I+V H + R ++ A G ++EY
Sbjct: 207 FELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEY 243
|
Length = 267 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 8e-26
Identities = 67/225 (29%), Positives = 118/225 (52%), Gaps = 20/225 (8%)
Query: 1328 EVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYD-----PNQGKVMIEGVDLRE 1382
+ +LK+ L + S+ AL+G SG GKST I + R D ++G + ++GVD+ +
Sbjct: 15 DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYD 74
Query: 1383 --INVKWLRKQTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHKFI----- 1435
++V LRK+ +V Q+P F +I DN+A G I +E +I + +
Sbjct: 75 PAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYG------LRIHGEDDEDFIEERVEESLK 128
Query: 1436 -SSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDA 1494
++L + ++ +S + LSGGQ+QR+ IAR I V+L+DE SALD S ++D
Sbjct: 129 AAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDL 188
Query: 1495 LRKVSKRATTIVVAHRL-STIREANMIAVVRDGAVVEYGSHETLL 1538
+ K+ + T ++V H + R + + +G ++E G + +
Sbjct: 189 IHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIF 233
|
Length = 250 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 9e-26
Identities = 73/236 (30%), Positives = 117/236 (49%), Gaps = 21/236 (8%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
IE+K +TF Y E L D VK G ++++G +GSGKST + LI + G++
Sbjct: 5 IEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQI 64
Query: 1374 MIEGVDLREINVKWLRKQTALVGQEP-ALFAG-TIRDNIALG--NPKASWAEIEEAAEEA 1429
+I+G L E NV +R + +V Q P F G T+ D++A G N E++E EA
Sbjct: 65 IIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEA 124
Query: 1430 Y----IHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDL 1485
+ F P +LSGGQKQR+AIA A+ ++++LDEA+S LD
Sbjct: 125 LELVGMQDFKEREP-----------ARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDP 173
Query: 1486 ESEKHVQDALRKVSKR--ATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETLLA 1539
E + ++ + T I + H L + ++ + V+++G V + L +
Sbjct: 174 EGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFS 229
|
Length = 279 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 1e-25
Identities = 69/216 (31%), Positives = 118/216 (54%), Gaps = 17/216 (7%)
Query: 1331 VLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYD--PN---QGKVMIEGVDL--REI 1383
+L D L + + A +G SG GKST + R D PN +G++ I+G+D+ +
Sbjct: 20 ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDT 79
Query: 1384 NVKWLRKQTALVGQEPALFAGTIRDNIALGNPK-----ASWAEIEEAAEEAYIHKFISSL 1438
NV LR + +V Q+P F +I DN+A G PK + +++E E++ L
Sbjct: 80 NVVLLRAKVGMVFQKPNPFPKSIYDNVAYG-PKLHGLAKNKKKLDEIVEKSLTS---VGL 135
Query: 1439 PQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKV 1498
+ ++ +S +LSGGQ+QR+ IARAI +LL+DE SALD + +++ ++++
Sbjct: 136 WEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQEL 195
Query: 1499 SKRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGS 1533
K T IVV H + ++ ++ +A + G +VEY +
Sbjct: 196 KKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNT 231
|
Length = 251 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 1e-25
Identities = 71/267 (26%), Positives = 115/267 (43%), Gaps = 59/267 (22%)
Query: 673 IEFKGVTFAYPSR------PETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYD 726
+E K + +P + ++ I +TL LVG SG GKST+ LI +
Sbjct: 5 LEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE 64
Query: 727 PTKGLITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACK 786
PT G I +G D+ L + R ++ E +LE V + +E
Sbjct: 65 PTSGEILFEGKDITKLSKEERRERV----LE-------LLEKVGLPEEFL---------- 103
Query: 787 AASAHSFISELPLGYDTQVGDRGT-QLSGGQKQRIALARAMIKDPRILLLDEPTSALDSE 845
R +LSGGQ+QRI +ARA+ +P++++ DEP SALD
Sbjct: 104 --------------------YRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALD-- 141
Query: 846 SESIVQQAID-----KISVGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLER 899
S+ Q ++ + +G T + I+H L+ V+ ++ I V+ G +VEIG ++
Sbjct: 142 -VSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSN 200
Query: 900 GGAYHDLVKLASEAVSQPQSKQKDAKR 926
H K AV P + + +R
Sbjct: 201 --PLHPYTKALLSAVPVPDPRLRRKRR 225
|
Length = 268 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 1e-25
Identities = 69/241 (28%), Positives = 115/241 (47%), Gaps = 38/241 (15%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
I+ G+ Y + L + L P +TL L+G SG GKS++ ++ P G +
Sbjct: 3 IQLNGINCFYGA---HQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL 59
Query: 733 TLDGH--DLKSL----QVKWLRTQIGMVGQEPILFA-TSILENVL--------MGKENAT 777
+ G+ D ++ LR +GMV Q+ L+ ++ EN++ + K+ A
Sbjct: 60 NIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQA- 118
Query: 778 MKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDE 837
+ A K + PL LSGGQ+QR+A+ARA++ +P++LL DE
Sbjct: 119 LARAEKLLKRLRLKPYADRYPL-----------HLSGGQQQRVAIARALMMEPQVLLFDE 167
Query: 838 PTSALDSESESIVQQAIDKI----SVGRTTIVIAHRLATV-KNANTIVVLDQGSVVEIGN 892
PT+ALD E I Q + I G T +++ H + K A+ +V ++ G +VE G+
Sbjct: 168 PTAALDPE---ITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGD 224
Query: 893 H 893
Sbjct: 225 A 225
|
Length = 242 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 1e-25
Identities = 74/234 (31%), Positives = 120/234 (51%), Gaps = 26/234 (11%)
Query: 1314 IELKMVTFTYP--SRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQG 1371
I ++ ++F YP + LKD V G VA+VG +GSGKST+ L+ P G
Sbjct: 6 IRVEHISFRYPDAATY---ALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAG 62
Query: 1372 KVMIEGVDLREINVKWLRKQTALVGQEP-ALFAG-TIRDNIALG--N---PKASWAE-IE 1423
+ + G+ L E V +R+Q +V Q P F G T++D++A G N P+ E ++
Sbjct: 63 TITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVD 122
Query: 1424 EAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSAL 1483
+A + + F++ P +LSGGQKQR+AIA + +++LDEA+S L
Sbjct: 123 QALRQVGMEDFLNREPH-----------RLSGGQKQRVAIAGVLALQPDIIILDEATSML 171
Query: 1484 DLESEKHVQDALR--KVSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHE 1535
D + V + +R K K T + + H L +A+ + V+ G ++E G+ E
Sbjct: 172 DPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPE 225
|
Length = 279 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 1e-25
Identities = 69/244 (28%), Positives = 115/244 (47%), Gaps = 44/244 (18%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKST---VFALIERFYDPTK 729
I+ G+ Y + L + L P +TL L+G SG GKS+ V L+E P
Sbjct: 3 IQLNGINCFYGA---HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEM---PRS 56
Query: 730 GLITLDGH--DLKSL----QVKWLRTQIGMVGQEPILFA-TSILENVL--------MGKE 774
G + + G+ D ++ LR +GMV Q+ L+ ++ +N++ + K+
Sbjct: 57 GTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKD 116
Query: 775 NATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILL 834
A + A + + PL LSGGQ+QR+A+ARA++ +P++LL
Sbjct: 117 QA-LARAEKLLERLRLKPYADRFPL-----------HLSGGQQQRVAIARALMMEPQVLL 164
Query: 835 LDEPTSALDSESESIVQQAIDKIS----VGRTTIVIAHRLATVKNANTIVV-LDQGSVVE 889
DEPT+ALD E I Q + I G T +++ H + + + VV ++ G +VE
Sbjct: 165 FDEPTAALDPE---ITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVE 221
Query: 890 IGNH 893
G+
Sbjct: 222 QGDA 225
|
Length = 242 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 1e-25
Identities = 78/239 (32%), Positives = 128/239 (53%), Gaps = 17/239 (7%)
Query: 1332 LKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWL--- 1388
+KD L ++ G + ++G SGSGKST++ L+ R +P +G+V+I+GVD+ +I+ L
Sbjct: 44 VKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREV 103
Query: 1389 -RKQTALVGQEPALFAG-TIRDNIALGNPKA--SWAEIEEAAEEAYIHKFISSLPQGYET 1444
RK+ A+V Q AL T+ DN A G A + E E A +A + + Y
Sbjct: 104 RRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPD 163
Query: 1445 QVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKR--A 1502
+LSGG +QR+ +ARA+ +LL+DEA SALD +QD L K+ +
Sbjct: 164 -------ELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQR 216
Query: 1503 TTIVVAHRL-STIREANMIAVVRDGAVVEYGSHETLLASHLNGVYASLVRAETEANAFS 1560
T + ++H L +R + IA++++G VV+ G+ + +L + N + R + FS
Sbjct: 217 TIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYVRTFFRGVDISQVFS 275
|
Length = 400 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 1e-25
Identities = 72/234 (30%), Positives = 122/234 (52%), Gaps = 16/234 (6%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
IEFK V+ + T +L +++L I + + ++G SG GKST+ I + + T G +
Sbjct: 2 IEFKNVSKHFG---PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDL 58
Query: 733 TLDGHDLK--SLQVKWLRTQIGMVGQEPILFA-TSILENVLMGKENATMKEAVAACKAAS 789
+DG + + + +R + GMV Q+ LF + LENV+ G V
Sbjct: 59 IVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLR------VRGASKEE 112
Query: 790 AHSFISEL--PLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESE 847
A EL +G + ++LSGGQ+QR+A+ARA+ P+++L DEPTSALD E
Sbjct: 113 AEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELR 172
Query: 848 SIVQQAI-DKISVGRTTIVIAHRLATV-KNANTIVVLDQGSVVEIGNHRQLLER 899
V + + D G T +++ H + K A+ ++ +D+G + E G+ + L++
Sbjct: 173 HEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226
|
Length = 240 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 2e-25
Identities = 71/229 (31%), Positives = 117/229 (51%), Gaps = 14/229 (6%)
Query: 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGK 1372
I +K F++ S+ E L + L V GS+VA+VG +G GK+++I
Sbjct: 614 AISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLI------------S 661
Query: 1373 VMIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIH 1432
M+ + R +R A V Q +F T+RDNI G+P E A + +
Sbjct: 662 AMLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDNILFGSPFDP-ERYERAIDVTALQ 720
Query: 1433 KFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQ 1492
+ LP G T++GE GV +SGGQKQR+++ARA+ S V + D+ SALD + V
Sbjct: 721 HDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVF 780
Query: 1493 DA-LRKVSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETLLAS 1540
D ++ + T ++V ++L + + + I +V +G + E G++E L +
Sbjct: 781 DKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSNN 829
|
Length = 1622 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 2e-25
Identities = 59/213 (27%), Positives = 112/213 (52%), Gaps = 11/213 (5%)
Query: 691 LRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQ 750
L++++L + ++G +G GKS + I F P G I L+G D+ +L + +
Sbjct: 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPE--KRD 72
Query: 751 IGMVGQEPILFA-TSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRG 809
I V Q LF ++ +N+ G + + + K I+E+ LG D + +
Sbjct: 73 ISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLE----IAEM-LGIDHLLNRKP 127
Query: 810 TQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKI--SVGRTTIVIA 867
LSGG++QR+A+ARA++ +P+ILLLDEP SALD ++ +++ + KI G T + +
Sbjct: 128 ETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVT 187
Query: 868 HRLATVKN-ANTIVVLDQGSVVEIGNHRQLLER 899
H A+ + ++ G ++++G ++ ++
Sbjct: 188 HDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 2e-25
Identities = 67/204 (32%), Positives = 102/204 (50%), Gaps = 23/204 (11%)
Query: 700 SSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDL----KSLQVKWLRTQIGMVG 755
+ + + G SG GKST+ I P G I L+G L K + + + +IG+V
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVF 81
Query: 756 QEPILFA-TSILENVLMG---KENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGT- 810
Q+ LF ++ EN+ G K N + +V + +L LG D + +R
Sbjct: 82 QQYALFPHLNVRENLAFGLKRKRNREDRISVDE---------LLDL-LGLD-HLLNRYPA 130
Query: 811 QLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKI--SVGRTTIVIAH 868
QLSGG+KQR+ALARA+ P +LLLDEP SALD + + +I ++ I + H
Sbjct: 131 QLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTH 190
Query: 869 RLATV-KNANTIVVLDQGSVVEIG 891
L+ A+ IVV++ G + IG
Sbjct: 191 DLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 2e-25
Identities = 73/250 (29%), Positives = 120/250 (48%), Gaps = 29/250 (11%)
Query: 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGL 731
I + ++F YP T L+ ++ + + +A+VG +G GKST+ L+ P G
Sbjct: 5 IIRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGT 63
Query: 732 ITLDGHDLKSLQVKWLRTQIGMVGQEP--ILFATSILENVLMGKEN-----ATMKEAV-A 783
IT+ G L V +R Q+GMV Q P ++ ++V G EN M E V
Sbjct: 64 ITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQ 123
Query: 784 ACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALD 843
A + F++ P +LSGGQKQR+A+A + P I++LDE TS LD
Sbjct: 124 ALRQVGMEDFLNREP-----------HRLSGGQKQRVAIAGVLALQPDIIILDEATSMLD 172
Query: 844 ----SESESIVQQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLER 899
E V+Q ++ + T + I H L A+ ++V+++G ++E G ++ +
Sbjct: 173 PRGRREVLETVRQLKEQKGI--TVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKS 230
Query: 900 GGAYHDLVKL 909
G H L ++
Sbjct: 231 G---HMLQEI 237
|
Length = 279 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 2e-25
Identities = 63/201 (31%), Positives = 105/201 (52%), Gaps = 23/201 (11%)
Query: 1347 LVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQEPALFAG-T 1405
L+G SG GK+T++ L+ F P+ G +M++G D+ NV + +V Q ALF T
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDV--TNVPPHLRHINMVFQSYALFPHMT 58
Query: 1406 IRDNIALG-----NPKASWAE-IEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQ 1459
+ +N+A G P+A + EA + +F P QLSGGQ+Q
Sbjct: 59 VEENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKP-----------HQLSGGQQQ 107
Query: 1460 RIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKR--ATTIVVAHRLS-TIRE 1516
R+A+ARA++ ++LLLDE SALD + +Q L+ + ++ T + V H +
Sbjct: 108 RVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTM 167
Query: 1517 ANMIAVVRDGAVVEYGSHETL 1537
++ IA++R G + + G+ E +
Sbjct: 168 SDRIAIMRKGKIAQIGTPEEI 188
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 2e-25
Identities = 58/228 (25%), Positives = 104/228 (45%), Gaps = 23/228 (10%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
++ + +T Y + L+L + + L+G +G GK+T ++ PT G
Sbjct: 1 LQIRNLTKTYKKGT-KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTA 59
Query: 733 TLDGHDLKSLQVKWLRTQIGMVGQEPILFAT-SILENV-----LMGKENATMKEAVAACK 786
++G+ +++ K R +G Q LF ++ E++ L G + +KE V
Sbjct: 60 YINGYSIRT-DRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVEL-- 116
Query: 787 AASAHSFISELPLG--YDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDS 844
+ L L + + LSGG K++++LA A+I P +LLLDEPTS LD
Sbjct: 117 ------LLRVLGLTDKANKRART----LSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDP 166
Query: 845 ESESIVQQAIDKISVGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIG 891
S + I ++ GR+ I+ H + + + I ++ G + IG
Sbjct: 167 ASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIG 214
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 2e-25
Identities = 66/219 (30%), Positives = 109/219 (49%), Gaps = 17/219 (7%)
Query: 688 TVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWL 747
L+ ++L + + + L+G SG GK+T+ +I T G I G D+ L +
Sbjct: 17 FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ-- 74
Query: 748 RTQIGMVGQEPILFAT-SILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVG 806
+ G+V Q LF ++ +N+ G +N M A A + A + G
Sbjct: 75 KRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLV-----GLPGSER 129
Query: 807 DRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKIS--VGRTTI 864
QLSGGQ+QR+ALARA+ P +LLLDEP SALD+ ++ I ++ +G TTI
Sbjct: 130 KYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTI 189
Query: 865 VIAH----RLATVKNANTIVVLDQGSVVEIGNHRQLLER 899
++ H L+ A+ IVV++ G + ++G +++
Sbjct: 190 MVTHDQEEALSM---ADRIVVMNHGVIEQVGTPQEIYRH 225
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 109 bits (273), Expect = 3e-25
Identities = 68/218 (31%), Positives = 110/218 (50%), Gaps = 13/218 (5%)
Query: 688 TVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWL 747
+ +L I + ++G SG GKST ++ R +PT G I +DG ++ L
Sbjct: 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVEL 65
Query: 748 ----RTQIGMVGQEPILFA-TSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYD 802
R +IGMV Q+ LF +IL+N +G E E KA + L Y+
Sbjct: 66 REVRRKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLV-GLE-EYE 123
Query: 803 TQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKI--SVG 860
+ D +LSGG +QR+ LARA+ +P ILL+DE SALD +Q + K+ ++
Sbjct: 124 HRYPD---ELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQ 180
Query: 861 RTTIVIAHRL-ATVKNANTIVVLDQGSVVEIGNHRQLL 897
+T + I H L ++ + IV++ G +V++G ++L
Sbjct: 181 KTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEIL 218
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 3e-25
Identities = 73/238 (30%), Positives = 119/238 (50%), Gaps = 28/238 (11%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
+ L V F+Y P F L V G +VA++G SG+GKST++ LI F P G++
Sbjct: 2 LALDDVRFSYGHLP-----MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEI 56
Query: 1374 MIEGVDLREINVKWLRKQTALVGQEPALFAG-TIRDNIALG-NP--KASWAE---IEEAA 1426
+I GVD + +++ QE LFA T+ NI LG +P K + + +E AA
Sbjct: 57 LINGVDHTASPPA--ERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAA 114
Query: 1427 EEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLE 1486
+ + F+ LP +LSGGQ+QR+A+AR +++ +LLLDE SALD
Sbjct: 115 AQVGLAGFLKRLPG-----------ELSGGQRQRVALARCLVREQPILLLDEPFSALDPA 163
Query: 1487 SEKHVQDALRKV--SKRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLASH 1541
+ + ++ ++ T ++V H A+ + + +G + GS + LL+
Sbjct: 164 LRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGK 221
|
Length = 231 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 4e-25
Identities = 69/223 (30%), Positives = 121/223 (54%), Gaps = 16/223 (7%)
Query: 1328 EVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYD--PN---QGKVMIEGVDL-- 1380
E L D L + + AL+G SG GKST + + R D N +G+V+++G ++
Sbjct: 16 EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYD 75
Query: 1381 REINVKWLRKQTALVGQEPALFAGTIRDNIALGNPK----ASWAEIEEAAEEAYIHKFIS 1436
++++V LRK+ +V Q+P F +I DN+A G P+ E+++ E A + K +
Sbjct: 76 KDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYG-PRIHGIKDKKELDKIVEWA-LKK--A 131
Query: 1437 SLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALR 1496
+L + + +S ++LSGGQ+QR+ IAR I V+L+DE +SALD S ++D +
Sbjct: 132 ALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMV 191
Query: 1497 KVSKRATTIVVAHRLSTI-REANMIAVVRDGAVVEYGSHETLL 1538
++ K T ++V H + R ++ A G ++E+ E +
Sbjct: 192 ELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIF 234
|
Length = 251 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 5e-25
Identities = 72/232 (31%), Positives = 118/232 (50%), Gaps = 23/232 (9%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYD--PN-- 1369
I+ + V F Y + LK ++++ S+VA +G SG GKST + L R D P
Sbjct: 4 IDARDVNFWYG---DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATR 60
Query: 1370 -QGKVMIEGVDL--REINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAA 1426
+G++ I+G ++ + + V LRK +V Q P F +I +N+A G +
Sbjct: 61 LEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYG------LRVNGVK 114
Query: 1427 EEAYI-HKFISSLPQG-----YETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEAS 1480
+ A+I + +L + ++ ES LSGGQ+QR+ IARA+ VLL+DE +
Sbjct: 115 DNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPA 174
Query: 1481 SALDLESEKHVQDALRKVSKRATTIVVAHRL-STIREANMIAVVRDGAVVEY 1531
SALD S V++ + ++ K T ++V H + R ++ A G +VEY
Sbjct: 175 SALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEY 226
|
Length = 250 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 5e-25
Identities = 74/222 (33%), Positives = 117/222 (52%), Gaps = 24/222 (10%)
Query: 691 LRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYD-----PTKGLITLDGHDLKSLQVK 745
L S++L ++ AL+G SG GKST+ I R D G I +GH++ S +
Sbjct: 21 LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTD 80
Query: 746 W--LRTQIGMVGQEPILFATSILENVLMG------KENATMKEAV-AACKAASAHSFISE 796
LR +IGMV Q+P F SI ENV+ G K+ + EAV + K AS + +
Sbjct: 81 TVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKD 140
Query: 797 LPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDK 856
+D+ +G LSGGQ+QR+ +AR + P+I+LLDEPTSALD S +++ +
Sbjct: 141 RL--HDSALG-----LSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLG 193
Query: 857 ISVGRTTIVIAHRL--ATVKNANTIVVLDQGSVVEIGNHRQL 896
+ T +++ + A+ + T LD G ++E + +Q+
Sbjct: 194 LKDDYTMLLVTRSMQQASRISDRTGFFLD-GDLIEYNDTKQM 234
|
Length = 252 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 5e-25
Identities = 73/225 (32%), Positives = 129/225 (57%), Gaps = 7/225 (3%)
Query: 1331 VLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRK 1390
VL+ ++ V +VG +GSGKST++ R + G++ + G ++ ++ LR+
Sbjct: 1325 VLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRR 1384
Query: 1391 QTALVGQEPALFAGTIRDNIALGNP--KASWAEIEEAAEEAYIHKFISSLPQGYETQVGE 1448
Q +++ Q+P LF GT+R N+ +P +AS AE+ A E + + ++S +G +++V E
Sbjct: 1385 QFSMIPQDPVLFDGTVRQNV---DPFLEASSAEVWAALELVGLRERVASESEGIDSRVLE 1441
Query: 1449 SGVQLSGGQKQRIAIARAILK-GSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVV 1507
G S GQ+Q + +ARA+LK GS +L+DEA++ +D ++ +Q + T I +
Sbjct: 1442 GGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITI 1501
Query: 1508 AHRLSTIREANMIAVVRDGAVVEYGSHETLLASHLNGVYASLVRA 1552
AHRL T+ + + I V+ GAV E GS L+ + ++ S+V A
Sbjct: 1502 AHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNR-QSIFHSMVEA 1545
|
Length = 1560 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 6e-25
Identities = 63/211 (29%), Positives = 104/211 (49%), Gaps = 9/211 (4%)
Query: 687 ETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKW 746
E L L+L I + ++G++G GKST+ I PT G I +DG D+ V
Sbjct: 18 EKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAK 77
Query: 747 LRTQIGMVGQEPI--LFAT-SILENVLMGKENATMKEAVAACKAASAHSF---ISELPLG 800
+ V Q+P+ +I EN+ + + + +A SF ++ L LG
Sbjct: 78 RANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLG 137
Query: 801 YDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVG 860
+ ++ DR LSGGQ+Q ++L A + P+ILLLDE T+ALD ++ V + KI
Sbjct: 138 LENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEE 197
Query: 861 R--TTIVIAHRL-ATVKNANTIVVLDQGSVV 888
TT+++ H + + N +++L G +V
Sbjct: 198 HKLTTLMVTHNMEDALDYGNRLIMLHSGKIV 228
|
Length = 263 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (262), Expect = 7e-25
Identities = 73/227 (32%), Positives = 116/227 (51%), Gaps = 24/227 (10%)
Query: 687 ETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYD--PT---KGLITLDGHDL-- 739
+ IL+++NL IP + AL+G SG GKST + R D P +G I LDG D+
Sbjct: 15 DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYD 74
Query: 740 KSLQVKWLRTQIGMVGQEPILFATSILENVLMG-------KENATMKEAVAACKAASAHS 792
++ V LR ++GMV Q+P F SI +NV G E+ + + KAA+
Sbjct: 75 PAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWD 134
Query: 793 FISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQ 852
+ + ++ LSGGQ+QR+ +AR + P ++L+DEP SALD S + ++
Sbjct: 135 EVKD-------KLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIED 187
Query: 853 AIDKISVGRTTIVIAHRL--ATVKNANTIVVLDQGSVVEIGNHRQLL 897
I K+ T +++ H + AT + T L+ G ++E G Q+
Sbjct: 188 LIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLN-GEIIESGLTDQIF 233
|
Length = 250 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 9e-25
Identities = 77/270 (28%), Positives = 131/270 (48%), Gaps = 22/270 (8%)
Query: 1302 KGRKLERSKPLGIELKMVTFTYPSRPEVTV--------------LKDFCLKVKGGSMVAL 1347
G K + S L IE +PS ++ V L+D V+GG V L
Sbjct: 1191 GGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGL 1250
Query: 1348 VGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQEPALFAGTIR 1407
+G +GSGKST++ + R +G++ I+GV + ++ RK ++ Q+ +F+GT R
Sbjct: 1251 LGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFR 1309
Query: 1408 DNIALGNPKASWA--EIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIAR 1465
N+ +P W+ EI + AEE + I P + + + G LS G KQ + +AR
Sbjct: 1310 KNL---DPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLAR 1366
Query: 1466 AILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIREANMIAVVRD 1525
+IL +++LLLDE S+ LD + + ++ L++ T I+ HR+ + E V+
Sbjct: 1367 SILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLECQQFLVIEG 1426
Query: 1526 GAVVEYGSHETLL--ASHLNGVYASLVRAE 1553
+V +Y S + LL S ++ R +
Sbjct: 1427 SSVKQYDSIQKLLNETSLFKQAMSAADRLK 1456
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 1e-24
Identities = 63/192 (32%), Positives = 97/192 (50%), Gaps = 15/192 (7%)
Query: 1323 YPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEG--VDL 1380
YP PEV LK + G ++AL+G +G+GKST++ + P G V+I+G +D
Sbjct: 1 YPGGPEV--LKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDY 58
Query: 1381 REINVKWLRKQTALVGQEP--ALFAGTIRDNIALG--NPKASWAEIEEAAEEAYIHKFIS 1436
+ R++ LV Q+P LFA + ++A G N S AE+E EA S
Sbjct: 59 SRKGLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGAS 118
Query: 1437 SLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALR 1496
G + LSGG+K+R+AIA A+ VLLLDE ++ LD + + LR
Sbjct: 119 ----GLRERPTH---CLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILR 171
Query: 1497 KVSKRATTIVVA 1508
++ T+V++
Sbjct: 172 RLRAEGMTVVIS 183
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 1e-24
Identities = 70/240 (29%), Positives = 128/240 (53%), Gaps = 17/240 (7%)
Query: 1309 SKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYD- 1367
+ P +E + ++F Y + L D L+ + + AL+G SG GKST + + R D
Sbjct: 2 ASPPKMEARGLSFFYG---DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDL 58
Query: 1368 ----PNQGKVMIEGVDL--REINVKWLRKQTALVGQEPALFAGTIRDNIALG---NPKAS 1418
+G+++++G ++ ++V LR++ +V Q+P F +I +N+A G N
Sbjct: 59 IPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKD 118
Query: 1419 WAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDE 1478
A + E E + H ++L + ++ ES + LSGGQ+QR+ IARA+ VLL+DE
Sbjct: 119 KAYLAERVERSLRH---AALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDE 175
Query: 1479 ASSALDLESEKHVQDALRKVSKRATTIVVAHRL-STIREANMIAVVRDGAVVEYGSHETL 1537
+SALD + + +++ + ++ R T I+V H + R +++ A G ++E G E +
Sbjct: 176 PASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQI 235
|
Length = 253 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 1e-24
Identities = 87/336 (25%), Positives = 147/336 (43%), Gaps = 72/336 (21%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
I + ++ AY RP +L +++L + + + LVG +G GKST+ ++ +P G +
Sbjct: 4 ITLENLSLAYGDRP---LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEV 60
Query: 733 TLDGHDLKSLQVKWLRTQIGMVGQEPILFAT-SILENVLMG----------KENATMKEA 781
T K L+V +L QEP L ++L+ V+ G E A A
Sbjct: 61 TRP----KGLRVGYLS-------QEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLA 109
Query: 782 VAACKAASAHSFISELPLGYD--------------TQVGDRGTQLSGGQKQRIALARAMI 827
+ + + E G+ + LSGG ++R+ALARA++
Sbjct: 110 DPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALL 169
Query: 828 KDPRILLLDEPTSALDSESESIVQQAIDKISVGRTT-IVIAH-R--LATVKNANTIVVLD 883
++P +LLLDEPT+ LD ES ++ D + T IV++H R L V A I+ LD
Sbjct: 170 EEPDLLLLDEPTNHLDLES---IEWLEDYLKRYPGTVIVVSHDRYFLDNV--ATHILELD 224
Query: 884 QGSVVEIGNHRQLLERGGAYHDLVKLASEAVSQ----PQSKQKDAKRGIEFSIYEKSVIE 939
+G +L G Y ++ +E + Q + +QK+ + E+
Sbjct: 225 RG---------KLTPYKGNYSSYLEQKAERLRQEAAAYEKQQKELAKEQEW--------- 266
Query: 940 VSRSRYANEVSKSKYFKSMQAEIQTVEEEQQKPRPR 975
+ R + A SK+K KS ++ +E + RP
Sbjct: 267 IRRGKAA--ASKAKKAKSRIKRLEKLEARLAEERPV 300
|
Length = 530 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 104 bits (260), Expect = 1e-24
Identities = 67/257 (26%), Positives = 121/257 (47%), Gaps = 33/257 (12%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
+E+ +T +Y S+ V ++D + + G + L+G +G+GK+T++ +I P+ GKV
Sbjct: 2 LEVTDLTKSYGSK--VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKV 59
Query: 1374 MIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIAL---------GNPKASWAEIEE 1424
I+GVD RK L G+ T R+N+ KA AE+ +
Sbjct: 60 TIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSK 119
Query: 1425 AAE-EAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSAL 1483
+ Y+ + +VGE S G KQ++AIARA++ +L+LDE +S L
Sbjct: 120 RLQLLEYLDR-----------RVGE----FSTGMKQKVAIARALVHDPSILVLDEPTSGL 164
Query: 1484 DLESEKHVQDALRKVSKRATTIVVA-HRLSTIRE-ANMIAVVRDGAVVEYGSHETLLASH 1541
D+ + + D ++++ ++ + H + + + + V+ G VV GS E L A
Sbjct: 165 DIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDART 224
Query: 1542 ----LNGVYASLVRAET 1554
L ++A ++ E
Sbjct: 225 VLRNLEEIFAFALKLEE 241
|
Length = 245 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 103 bits (257), Expect = 1e-24
Identities = 72/228 (31%), Positives = 115/228 (50%), Gaps = 34/228 (14%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
+ L V + Y P +F L V G +VA++G SG+GKST++ LI F +P G +
Sbjct: 1 LALDKVRYEYEHLP-----MEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSI 55
Query: 1374 MIEGVDLREINVKWLRKQTALVGQEPALFAG-TIRDNIALG-NP-----KASWAEIEEAA 1426
+ + ++ +++ QE LFA T+R NI LG +P ++ +AA
Sbjct: 56 KVNDQS--HTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAA 113
Query: 1427 EEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLE 1486
++ I ++ LP+ QLSGGQ+QR+A+AR +++ + +LLLDE SALD
Sbjct: 114 QQVGIADYLDRLPE-----------QLSGGQRQRVALARCLVRPNPILLLDEPFSALD-- 160
Query: 1487 SEKHVQDALRKVSKRA-----TTIVVAHRLS-TIREANMIAVVRDGAV 1528
++ L V + T ++V H LS A+ IAVV G +
Sbjct: 161 -PLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKI 207
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 2e-24
Identities = 65/251 (25%), Positives = 119/251 (47%), Gaps = 35/251 (13%)
Query: 1314 IELKMVTFTYPSRPE-VTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPN--- 1369
+E++ +T + + V ++D +V+ G ++ +VG SGSGKST+ +
Sbjct: 6 LEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRI 65
Query: 1370 -QGKVMIEGVDLREINVKWLR----KQTALVGQEP-ALFAG--TIRDNIA---LGNPKAS 1418
G+V+++G DL ++ + +R K+ A++ Q+P TI D I + K S
Sbjct: 66 TSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGS 125
Query: 1419 WAEIEEAAEEAYI-----HKF-ISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSR 1472
AE + A E P QLSGG +QR+ IA A+ +
Sbjct: 126 RAEARKRAVELLEQVGLPDPERRDRYPH-----------QLSGGMRQRVMIAMALALKPK 174
Query: 1473 VLLLDEASSALDLESEKHVQDALRKVSKR--ATTIVVAHRLSTIRE-ANMIAVVRDGAVV 1529
+L+ DE ++ALD+ ++ + D L+ + + + + H L + E A+ + V+ G +V
Sbjct: 175 LLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIV 234
Query: 1530 EYGSHETLLAS 1540
E G E +L++
Sbjct: 235 ETGPTEEILSN 245
|
Length = 539 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 2e-24
Identities = 71/223 (31%), Positives = 112/223 (50%), Gaps = 23/223 (10%)
Query: 688 TVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWL 747
V + +L + + ++G SG GKST+ L+ R +PT+G I +DG D+ L L
Sbjct: 41 VVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAEL 100
Query: 748 RT----QIGMVGQEPILFA-TSILENVLMGKENATMKEAVAACKAASAHSFISELPL-GY 801
R +I MV Q L ++LENV G E + +A +A A + + L GY
Sbjct: 101 RELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEA---LELVGLEGY 157
Query: 802 DTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDS------ESESIVQQAID 855
+ +LSGG +QR+ LARA+ DP ILL+DE SALD + E + QA
Sbjct: 158 ADK---YPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQA-- 212
Query: 856 KISVGRTTIVIAHRL-ATVKNANTIVVLDQGSVVEIGNHRQLL 897
+ +T + I H L ++ + I ++ G +V++G ++L
Sbjct: 213 --KLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEIL 253
|
Length = 386 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 2e-24
Identities = 71/217 (32%), Positives = 122/217 (56%), Gaps = 14/217 (6%)
Query: 1332 LKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYD--PNQ---GKVMIEGVDL--REIN 1384
LK+ L + + A +G SG GKST++ R Y+ P Q G+++++G ++ + +
Sbjct: 29 LKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88
Query: 1385 VKWLRKQTALVGQEPALFAGTIRDNIALG---NPKASWAEIEEAAEEAYIHKFISSLPQG 1441
+ LR + +V Q+P F +I DNIA G K S AE++E E A + K ++L
Sbjct: 89 IALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWA-LTK--AALWNE 145
Query: 1442 YETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKR 1501
+ ++ +SG LSGGQ+QR+ IAR I VLLLDE SALD S +++ + ++ +
Sbjct: 146 VKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQD 205
Query: 1502 ATTIVVAHRL-STIREANMIAVVRDGAVVEYGSHETL 1537
T ++V H + R ++ A + G ++E+G+ +T+
Sbjct: 206 YTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTI 242
|
Length = 260 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 2e-24
Identities = 66/237 (27%), Positives = 121/237 (51%), Gaps = 23/237 (9%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
IE + + F Y T L+ L+L IP AL+G +G GKST+ + Y P +G +
Sbjct: 5 IEVEDLHFRYKD--GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRV 62
Query: 733 TLDGHDLKSLQVKWLRTQIGMVGQEP--ILFATSILENVLMGKEN-----ATMKEAV-AA 784
+ G ++ + KW+R+++G+V Q+P +F++++ ++V G N ++ V A
Sbjct: 63 KVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEA 122
Query: 785 CKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDS 844
KA F + P LS GQK+R+A+A + DP +++LDEP + LD
Sbjct: 123 LKAVRMWDFRDKPPY-----------HLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDP 171
Query: 845 ESESIVQQAIDKISVGRTTIVIA-HRLATVKN-ANTIVVLDQGSVVEIGNHRQLLER 899
+ + + +D++ T+++A H + A+ ++VL +G V+ G+ L +
Sbjct: 172 RGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLTDE 228
|
Length = 274 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 2e-24
Identities = 65/227 (28%), Positives = 110/227 (48%), Gaps = 32/227 (14%)
Query: 687 ETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQV-K 745
++ IL ++L +P + +AL+G +G GK+T+ I P G I DG D+ L +
Sbjct: 12 KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHE 71
Query: 746 WLRTQIGMVGQEPILFAT-SILENVLMGKENATMKEAVAACKAASAHSFISELPLGYD-- 802
R IG V + +F ++ EN+L+G A A +A + + Y+
Sbjct: 72 RARAGIGYVPEGRRIFPELTVEENLLLG--------AYARRRAKRKAR-LERV---YELF 119
Query: 803 ----TQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQ---AID 855
+ LSGG++Q +A+ARA++ P++LLLDEP+ L + IV++ AI
Sbjct: 120 PRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGL---APKIVEEIFEAIR 176
Query: 856 KISVGRTTIVI----AHRLATVKNANTIVVLDQGSVVEIGNHRQLLE 898
++ TI++ A + A+ VL++G VV G +LL
Sbjct: 177 ELRDEGVTILLVEQNARFALEI--ADRAYVLERGRVVLEGTAAELLA 221
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 2e-24
Identities = 75/268 (27%), Positives = 129/268 (48%), Gaps = 59/268 (22%)
Query: 1309 SKPLGIELKMVTFTYPSRP--------EVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIW 1360
+ L +E++ + +P + + + L ++ G + LVG SGSGKST+
Sbjct: 273 APVL-LEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGL 331
Query: 1361 LIQRFYDPNQGKVMIEGVDLREIN---VKWLRKQTALVGQEPALFAG-----TIRDNIAL 1412
+ R P+QG++ +G D+ ++ ++ LR++ +V Q+P + T+ I
Sbjct: 332 ALLRL-IPSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDP--YGSLSPRMTVGQIIEE 388
Query: 1413 G----NPKASWAEIEEAAEEA-------------YIHKFISSLPQGYETQVGESGVQLSG 1455
G PK S AE ++ EA Y H+F SG
Sbjct: 389 GLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEF-------------------SG 429
Query: 1456 GQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKR--ATTIVVAHRLST 1513
GQ+QRIAIARA++ ++LLDE +SALD + V D LR + ++ + + ++H L+
Sbjct: 430 GQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAV 489
Query: 1514 IRE-ANMIAVVRDGAVVEYGSHETLLAS 1540
+R + + V+RDG +VE G E + A+
Sbjct: 490 VRALCHRVIVMRDGKIVEQGPTEAVFAN 517
|
Length = 534 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 3e-24
Identities = 67/206 (32%), Positives = 100/206 (48%), Gaps = 29/206 (14%)
Query: 706 LVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIGMVGQEPILFA-TS 764
L+G SG GK+T+ L+ F P G I LDG D+ V I MV Q LF +
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDV--TNVPPHLRHINMVFQSYALFPHMT 58
Query: 765 ILENV-----LMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRG----TQLSGG 815
+ ENV + A +K V L L Q+ + QLSGG
Sbjct: 59 VEENVAFGLKMRKVPRAEIKPRVLEA-----------LRL---VQLEEFADRKPHQLSGG 104
Query: 816 QKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKI--SVGRTTIVIAH-RLAT 872
Q+QR+ALARA++ P+ILLLDEP SALD + +Q + I +G T + + H +
Sbjct: 105 QQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEA 164
Query: 873 VKNANTIVVLDQGSVVEIGNHRQLLE 898
+ ++ I ++ +G + +IG ++ E
Sbjct: 165 MTMSDRIAIMRKGKIAQIGTPEEIYE 190
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 3e-24
Identities = 73/226 (32%), Positives = 123/226 (54%), Gaps = 18/226 (7%)
Query: 1331 VLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRF---YDPN---QGKVMIEGVDLREIN 1384
+LKD +K+ S+ ++G SGSGKST++ ++ R YD GKV+ G D+ +I+
Sbjct: 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID 84
Query: 1385 VKWLRKQTALVGQEPALFAG-TIRDNIALGNPKASWA-----EIEEAAEEAYIHKFISSL 1438
LRK+ +V Q+P F +I DNIA P S EI++ EE + K L
Sbjct: 85 AIKLRKEVGMVFQQPNPFPHLSIYDNIAY--PLKSHGIKEKREIKKIVEEC-LRKV--GL 139
Query: 1439 PQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKV 1498
+ ++ QLSGGQ+QR+ IARA+ +VLL+DE +S +D+ + + ++ + ++
Sbjct: 140 WKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITEL 199
Query: 1499 SKRATTIVVAHRLSTI-REANMIAVVRDGAVVEYGSHETLLASHLN 1543
++V+H + R A+ +A + +G +VE+GS + S N
Sbjct: 200 KNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTSPKN 245
|
Length = 257 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (260), Expect = 3e-24
Identities = 74/234 (31%), Positives = 120/234 (51%), Gaps = 18/234 (7%)
Query: 1312 LGIELKMVTFTYPS-RP-EVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPN 1369
+GI L+ V++TY + P E L D L ++ GS A +G +GSGKST++ L+ + P
Sbjct: 1 MGINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPT 60
Query: 1370 QGKVMIEGVDLREI----NVKWLRKQTALVGQ--EPALFAGTIRDNIALG--NPKASWAE 1421
QG V ++ + ++K +RK+ LV Q E LF T+ ++A G N S E
Sbjct: 61 QGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEE 120
Query: 1422 IEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASS 1481
E A E IS E+ ++ +LSGGQ +R+AIA + ++L+LDE ++
Sbjct: 121 AEALAREKLALVGIS------ESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTA 174
Query: 1482 ALDLESEKHVQDALRKVSKRATTIV-VAHRLSTIRE-ANMIAVVRDGAVVEYGS 1533
LD + K + +K+ + TIV V H + + A+ + V+ G +V G
Sbjct: 175 GLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGK 228
|
Length = 280 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 3e-24
Identities = 67/229 (29%), Positives = 107/229 (46%), Gaps = 28/229 (12%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
+ L + F+Y +P F L G + A+VG SGSGKST++ LI F P G+V
Sbjct: 1 VRLDKIRFSYGEQP-----MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRV 55
Query: 1374 MIEGVDLREINVKWLRKQTALVGQEPALFAG-TIRDNIALG-NPKASWAE-----IEEAA 1426
+I GVD+ + +++ QE LFA T+ N+ LG +P IE A
Sbjct: 56 LINGVDVTAAPPA--DRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVAL 113
Query: 1427 EEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLE 1486
+ LP +LSGG++QR+A+AR +++ VLLLDE +ALD
Sbjct: 114 ARVGLAGLEKRLPG-----------ELSGGERQRVALARVLVRDKPVLLLDEPFAALDPA 162
Query: 1487 SEKHVQDALRKV--SKRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYG 1532
+ D + + + T ++V H+ + A + + +G + G
Sbjct: 163 LRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 4e-24
Identities = 84/277 (30%), Positives = 126/277 (45%), Gaps = 36/277 (12%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDP---TK 729
+EFK V+F YP + L ++ IP AL+G +G GKST+ LI P
Sbjct: 6 VEFKHVSFTYPDSKKPA-LNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPN 64
Query: 730 GLITLDGHDLKSLQVKWLRTQIGMVGQEP--ILFATSILENVLMGKEN-----ATMKEAV 782
IT+DG L + V +R ++G+V Q P ++ ++V G EN M + V
Sbjct: 65 SKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIV 124
Query: 783 A-ACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSA 841
+I P LSGGQKQR+A+A + +P+I++LDE TS
Sbjct: 125 RDVLADVGMLDYIDSEP-----------ANLSGGQKQRVAIAGILAVEPKIIILDESTSM 173
Query: 842 LDSESESIVQQAIDKISV--GRTTIVIAHRLATVKNANTIVVLD------QGSVVEIGNH 893
LD + + + I K+ T I I H + A+ ++VLD QGS VEI +
Sbjct: 174 LDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFSK 233
Query: 894 RQLLERGG-----AYHDLVKLASEAVSQPQSKQKDAK 925
++L+ G Y KL + +S PQ + K
Sbjct: 234 VEMLKEIGLDIPFVYKLKNKLKEKGISVPQEINTEEK 270
|
Length = 282 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 4e-24
Identities = 76/274 (27%), Positives = 133/274 (48%), Gaps = 27/274 (9%)
Query: 673 IEFKGVTFAY-PSRP-ETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKG 730
I F+ V Y P E L +N+ IPS +A++G +G GKST+ + PT G
Sbjct: 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSG 62
Query: 731 LITLDGHDL----KSLQVKWLRTQIGMVGQ--EPILFATSILENVLMGKENATMKEAVAA 784
+T+ + K+ ++K LR ++G+V Q E LF ++ +++ G N + E A
Sbjct: 63 TVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAK 122
Query: 785 CKAASAHSFISELPLGYDTQVGDRGT-QLSGGQKQRIALARAMIKDPRILLLDEPTSALD 843
KA + G ++ R +LSGGQ +R+A+A + +P +L+LDEPT+ LD
Sbjct: 123 QKAREMIELV-----GLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLD 177
Query: 844 SESESIVQQAIDKI--SVGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLERG 900
+ + + K+ G TT+++ H + A+ IVV+ +G+V G R++
Sbjct: 178 PKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFADP 237
Query: 901 GAYHDLVKLASEAVSQPQS----KQKDAKRGIEF 930
+L + + P++ + + K GI F
Sbjct: 238 D------ELEAIGLDLPETVKFKRALEEKFGISF 265
|
Length = 290 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 5e-24
Identities = 67/217 (30%), Positives = 113/217 (52%), Gaps = 31/217 (14%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
IE++ +T +Y +RP VL+D L V+ G + AL+G +G+GKST++ I P+ G++
Sbjct: 5 IEVENLTVSYGNRP---VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEI 61
Query: 1374 MIEGVDLREINVKWLRKQTALVGQEPAL---FAGTIRDNIALG----------NPKASWA 1420
I G +R+ K LR V Q+ ++ F T++D + LG K
Sbjct: 62 KIFGKPVRKRR-KRLR--IGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKE 118
Query: 1421 EIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEAS 1480
+++EA E + Q+GE LSGGQKQR+ +ARA+ + +LLLDE
Sbjct: 119 KVDEALERVGMEDLRDR-------QIGE----LSGGQKQRVLLARALAQNPDLLLLDEPF 167
Query: 1481 SALDLESEKHVQDALRKVSKRATTI-VVAHRLSTIRE 1516
+ +D+ +K + D L+++ + T+ +V H L +
Sbjct: 168 TGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMA 204
|
Length = 254 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 104 bits (260), Expect = 5e-24
Identities = 53/223 (23%), Positives = 96/223 (43%), Gaps = 13/223 (5%)
Query: 687 ETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKW 746
+ + +N + + +G +G GK+T ++ PT G + G+D+ + +
Sbjct: 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRK 63
Query: 747 LRTQIGMVGQEPILF-ATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGY--DT 803
+R IG+V Q + + EN+ M + + A +A LG D
Sbjct: 64 VRRSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFE---LGEAADR 120
Query: 804 QVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKI-SVGRT 862
VG SGG ++R+ +A ++I P +L LDEPT+ LD + + I + G T
Sbjct: 121 PVG----TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVT 176
Query: 863 TIVIAHRLATV-KNANTIVVLDQGSVVEIGNHRQLLERGGAYH 904
++ H + K + I ++D G ++ G +L R G
Sbjct: 177 ILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRRLGKDT 219
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 5e-24
Identities = 73/234 (31%), Positives = 124/234 (52%), Gaps = 37/234 (15%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
+E +G+T +P V ++L + + AL+G +G GKST+ ++ Y P G I
Sbjct: 5 LEMRGITKRFPG---VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEI 61
Query: 733 TLDGHDLKSLQVK----WLRTQIGMVGQEPILFAT-SILENVLMGKENAT-----MKEAV 782
+DG K +++K +R IGMV Q +L T ++ EN+++G E + ++A
Sbjct: 62 RVDG---KEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQAR 118
Query: 783 AACKAASAHSFISE---LPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPT 839
A K +SE LP+ D +V D LS G++QR+ + +A+ + R+L+LDEPT
Sbjct: 119 ARIKE------LSERYGLPVDPDAKVAD----LSVGEQQRVEILKALYRGARLLILDEPT 168
Query: 840 SAL-DSESES---IVQQAIDKISVGRTTIVIAHRLATVKN-ANTIVVLDQGSVV 888
+ L E++ I+++ + G+T I I H+L V A+ + VL +G VV
Sbjct: 169 AVLTPQEADELFEILRRLAAE---GKTIIFITHKLKEVMAIADRVTVLRRGKVV 219
|
Length = 501 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 98.2 bits (245), Expect = 6e-24
Identities = 50/129 (38%), Positives = 73/129 (56%), Gaps = 13/129 (10%)
Query: 1356 STVIWLIQRFYDPNQGKVMIEGVDLREINV-KWLRKQTALVGQEPALFAG-TIRDNIALG 1413
ST++ LI P G ++++G D ++ K LRK+ +V Q+P LF T+R+N+ G
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 1414 -NPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSR 1472
K + A EEA E + F+ P G LSGGQKQR+AIARA+LK +
Sbjct: 61 LRDKEADARAEEALERVGLPDFLDREPVG----------TLSGGQKQRVAIARALLKKPK 110
Query: 1473 VLLLDEASS 1481
+LLLDE ++
Sbjct: 111 LLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 99.4 bits (249), Expect = 6e-24
Identities = 55/218 (25%), Positives = 102/218 (46%), Gaps = 59/218 (27%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
+EL+ +T + V L L V+ G + AL+G +G+GKST++ ++ Y P+ G++
Sbjct: 1 LELRGITKRFGG---VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEI 57
Query: 1374 MIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHK 1433
+++G + FA + RD G I A ++
Sbjct: 58 LVDG--------------------KEVSFA-SPRDARRAG--------I------AMVY- 81
Query: 1434 FISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQD 1493
QLS G++Q + IARA+ + +R+L+LDE ++AL + +
Sbjct: 82 ------------------QLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFK 123
Query: 1494 ALRKVSKRATTIV-VAHRLSTIRE-ANMIAVVRDGAVV 1529
+R++ + ++ ++HRL + E A+ + V+RDG VV
Sbjct: 124 VIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVV 161
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 7e-24
Identities = 61/257 (23%), Positives = 105/257 (40%), Gaps = 46/257 (17%)
Query: 673 IEFKGVTFAYPSRPETV-ILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDP---- 727
+E K ++ ++P+ V + ++ + + L +VG SG GKS + I
Sbjct: 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNAR 61
Query: 728 -TKGLITLDGHDLKSL----QVKWLRTQIGMVGQEPIL-----------FATSILENVLM 771
G I DG DL SL K +I M+ Q+P+ A + +
Sbjct: 62 IVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKG 121
Query: 772 GKENATMKEAVAACKAA---SAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIK 828
+ + A+ + + P +LSGG +QR+ +A A+
Sbjct: 122 LSKKEAKERAIELLELVGIPDPERRLKSYPH-----------ELSGGMRQRVMIAMALAL 170
Query: 829 DPRILLLDEPTSALDSESESIVQQAI----DKIS--VGRTTIVIAHRLATVKN-ANTIVV 881
+P++L+ DEPT+ALD VQ I ++ G I+I H L V A+ + V
Sbjct: 171 NPKLLIADEPTTALD----VTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAV 226
Query: 882 LDQGSVVEIGNHRQLLE 898
+ G +VE G ++ +
Sbjct: 227 MYAGRIVEEGPVEEIFK 243
|
Length = 316 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 7e-24
Identities = 71/219 (32%), Positives = 110/219 (50%), Gaps = 21/219 (9%)
Query: 1328 EVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYD--PN---QGKVMIEGVDLRE 1382
E LK+ +++ S+ AL+G SG GKST I + R D N +GKV IEG D+ E
Sbjct: 24 EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYE 83
Query: 1383 --INVKWLRKQTALVGQEPALFAGTIRDNIALG------NPKASWAEIEEAAEEAYIHKF 1434
++V LRK +V Q+P F +I DN+A G N K +E A A +
Sbjct: 84 PDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDE 143
Query: 1435 ISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDA 1494
S ++ + LSGGQ+QR+ IAR + +++L DE +SALD S ++D
Sbjct: 144 TSD-------RLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDL 196
Query: 1495 LRKVSKRATTIVVAHRL-STIREANMIAVVRDGAVVEYG 1532
+ + K T ++V H + R ++ G ++E+G
Sbjct: 197 IMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFG 235
|
Length = 258 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 7e-24
Identities = 69/236 (29%), Positives = 117/236 (49%), Gaps = 35/236 (14%)
Query: 691 LRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTK-----GLITLDGHDLKSLQVK 745
L+ +++ IP AL+G SG GKST + R D K G + LDG D+ V
Sbjct: 61 LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120
Query: 746 W--LRTQIGMVGQEPILFATSILENV-----------------LMGKENATMKEAVA--A 784
LR ++GMV Q P F SI EN+ L+G+++ ++ + +
Sbjct: 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERS 180
Query: 785 CKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDS 844
+ A+ +++ ++ D LSGGQ+QR+ +AR + DP ++L+DEP SALD
Sbjct: 181 LRQAALWDEVND-------RLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDP 233
Query: 845 ESESIVQQAIDKISVGRTTIVIAHRL--ATVKNANTIVVLDQGSVVEIGNHRQLLE 898
+ S ++ I++++ T +V+ H + A + T V L G +VE + ++ E
Sbjct: 234 IATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGGELVEYDDTDKIFE 289
|
Length = 305 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 7e-24
Identities = 67/228 (29%), Positives = 119/228 (52%), Gaps = 26/228 (11%)
Query: 690 ILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLK--------- 740
+L+ ++L + ++++G+SG GKST I P+ G I ++G +++
Sbjct: 21 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQL 80
Query: 741 ----SLQVKWLRTQIGMVGQEPILFA-TSILENVLMGKENA---TMKEAVAACKAASAHS 792
Q++ LRT++GMV Q L++ ++LENV+ + + EA+ + A
Sbjct: 81 KPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKV 140
Query: 793 FISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQ 852
I+E Y LSGGQ+QR+A+ARA+ +P ++L DEPTSALD E V +
Sbjct: 141 GIAEKADAYPAH-------LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLK 193
Query: 853 AIDKISV-GRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLE 898
+ ++ GRT +V+ H + ++ ++ ++ L QG + E G Q+
Sbjct: 194 VMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQVFG 241
|
Length = 256 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (254), Expect = 8e-24
Identities = 68/207 (32%), Positives = 113/207 (54%), Gaps = 7/207 (3%)
Query: 1332 LKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPN---QGKVMIEGVDLREINVKWL 1388
L D ++++ + AL+G SG GKST + R D G V IEG D++ +V L
Sbjct: 18 LFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVAL 77
Query: 1389 RKQTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHKFISS--LPQGYETQV 1446
RK +V Q+P +F +I +NI+ PK + EEA + + L + + ++
Sbjct: 78 RKNVGMVFQQPNVFVKSIYENISYA-PKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKL 136
Query: 1447 GESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIV 1506
++ + LSGGQ+QR+ IARA+ ++LLLDE +SALD S +++ L+++S + I+
Sbjct: 137 KQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIM 196
Query: 1507 VAHRLST-IREANMIAVVRDGAVVEYG 1532
V H + R A+ A G ++E+G
Sbjct: 197 VTHNMQQGKRVADYTAFFHLGELIEFG 223
|
Length = 246 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 8e-24
Identities = 74/245 (30%), Positives = 124/245 (50%), Gaps = 29/245 (11%)
Query: 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYD----- 726
K+E +G++F Y + L ++L ++ AL+G SG GKST + R D
Sbjct: 6 KMEARGLSFFYG---DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGA 62
Query: 727 PTKGLITLDGHDLKS--LQVKWLRTQIGMVGQEPILFATSILENVLMG------KENATM 778
+G I LDG ++ + V LR ++GMV Q+P F SI ENV G K+ A +
Sbjct: 63 RVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYL 122
Query: 779 KEAV-AACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDE 837
E V + + A+ + + ++ + LSGGQ+QR+ +ARA+ +P +LL+DE
Sbjct: 123 AERVERSLRHAALWDEVKD-------RLHESALGLSGGQQQRLCIARALAVEPEVLLMDE 175
Query: 838 PTSALDSESESIVQQAIDKISVGRTTIVIAHRL---ATVKNANTIVVLDQGSVVEIGNHR 894
P SALD + +++ I ++ T I++ H + A V + + G ++E+G
Sbjct: 176 PASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYM--GKLIEVGPTE 233
Query: 895 QLLER 899
Q+ R
Sbjct: 234 QIFTR 238
|
Length = 253 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 8e-24
Identities = 71/230 (30%), Positives = 120/230 (52%), Gaps = 20/230 (8%)
Query: 673 IEFKGVTFAY-PSRP-ETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKG 730
I+F+ V + Y P P E L +++ + +ALVG +G GKST+ P+ G
Sbjct: 3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSG 62
Query: 731 LITLDGHDL------KSLQVKWLRTQIGMVGQ--EPILFATSILENVLMGKENATMKEAV 782
IT+ G+ + K+L K LR ++ +V Q E LF ++L++V G +N E
Sbjct: 63 TITIAGYHITPETGNKNL--KKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDE 120
Query: 783 AACKAASAHSFISELPLGYDTQVGDRGT-QLSGGQKQRIALARAMIKDPRILLLDEPTSA 841
A KA ++ ++ G + + +LSGGQ +R+A+A M +P IL LDEP +
Sbjct: 121 AKEKALK---WLKKV--GLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAG 175
Query: 842 LDSES-ESIVQQAIDKISVGRTTIVIAHRLATV-KNANTIVVLDQGSVVE 889
LD E + ++Q D G T I++ H + V + A+ ++VL+ G +++
Sbjct: 176 LDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIK 225
|
Length = 287 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 8e-24
Identities = 70/229 (30%), Positives = 106/229 (46%), Gaps = 32/229 (13%)
Query: 691 LRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYD-----PTKGLITLDGHDL--KSLQ 743
L + + IP ++ AL+G SG GKST+ R D G I +G ++
Sbjct: 22 LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGAD 81
Query: 744 VKWLRTQIGMVGQEPILFATSILENVLMG------KENATMKEAVAACKAASAHSFISEL 797
V LR +IGMV Q P F SI ENV G K T+ V +A
Sbjct: 82 VVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAAL------ 135
Query: 798 PLGYDTQVGDR----GTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQA 853
+D +V DR LSGGQ+QR+ +AR + +P ++L+DEP SALD + + ++
Sbjct: 136 ---WD-EVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDL 191
Query: 854 IDKISVGRTTIVIAHRL---ATVKNANTIVVLDQGSVVEIGNHRQLLER 899
I+ + T I++ H + A V + + L G ++E Q+ E
Sbjct: 192 IEDLKKEYTVIIVTHNMQQAARVSDYTGFMYL--GKLIEFDKTTQIFEN 238
|
Length = 253 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 9e-24
Identities = 71/237 (29%), Positives = 114/237 (48%), Gaps = 26/237 (10%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
+E +G++ ++ ++ +L+L I + + L L+G SG GK+TV LI F P G I
Sbjct: 15 VELRGISKSFDG---KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRI 71
Query: 733 TLDGHDLKSLQVKWLRTQIGMVGQEPILFA-TSILENVLMG-----KENATMKEAVA-AC 785
LDG D+ V + V Q LF ++ ENV G A + V A
Sbjct: 72 MLDGQDIT--HVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEAL 129
Query: 786 KAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSE 845
+ F P QLSGGQ+QR+A+ARA++ P++LLLDE SALD +
Sbjct: 130 RMVQLEEFAQRKP-----------HQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYK 178
Query: 846 SESIVQQAIDKI--SVGRTTIVIAH-RLATVKNANTIVVLDQGSVVEIGNHRQLLER 899
+Q + + +G T + + H + + ++ IVV+ G + + G R++ E
Sbjct: 179 LRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEE 235
|
Length = 375 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 9e-24
Identities = 63/228 (27%), Positives = 105/228 (46%), Gaps = 26/228 (11%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
+ + F+Y +P +L + A+VG SG GKST+ LI F P G +
Sbjct: 1 VRLDKIRFSYGEQPMH-----FDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRV 55
Query: 733 TLDGHDLKSLQVKWLRTQIGMVGQEPILFA-TSILENVLMG-----KENATMKEAVAACK 786
++G D+ + + M+ QE LFA ++ +NV +G K A ++A+
Sbjct: 56 LINGVDVTAAPPA--DRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVAL 113
Query: 787 AASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSES 846
A +G +LSGG++QR+ALAR +++D +LLLDEP +ALD
Sbjct: 114 AR----------VGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPAL 163
Query: 847 ESIVQQAIDKI--SVGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIG 891
+ + + + T +++ H+ K A +V LD G + G
Sbjct: 164 RAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 104 bits (260), Expect = 9e-24
Identities = 67/211 (31%), Positives = 115/211 (54%), Gaps = 18/211 (8%)
Query: 691 LRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWL--- 747
L +++L +P+ + ++G SG GKST+ + PT G + +DG DL +L L
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80
Query: 748 RTQIGMVGQE-PILFATSILENVLMGKE-NATMKEAVAACKAASAHSFISELP--LGYDT 803
R QIGM+ Q +L + ++ NV + E + T K+ + ++EL +G
Sbjct: 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEI--------KRKVTELLALVGLGD 132
Query: 804 QVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKIS--VGR 861
+ + LSGGQKQR+A+ARA+ +P++LL DE TSALD + + + + +I+ +G
Sbjct: 133 KHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGL 192
Query: 862 TTIVIAHRLATVKN-ANTIVVLDQGSVVEIG 891
T ++I H + VK + + V+ G ++E G
Sbjct: 193 TILLITHEMDVVKRICDCVAVISNGELIEQG 223
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 1e-23
Identities = 79/246 (32%), Positives = 120/246 (48%), Gaps = 44/246 (17%)
Query: 1314 IELKMVTFTY---PSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQ 1370
++L +T+ Y P R F L V+ G VA++G SG+GKST++ LI F P
Sbjct: 2 LKLTDITWLYHHLPMR--------FDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPAS 53
Query: 1371 GKVMIEGVDLREINVKWLRKQTALVGQEPALFAG-TIRDNIALG-NP-----KASWAEIE 1423
G + + G D R+ +++ QE LF+ T+ NI LG NP A ++
Sbjct: 54 GSLTLNGQDHTTTPPS--RRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLH 111
Query: 1424 EAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSAL 1483
A + I ++ LP QLSGGQ+QR+A+AR +++ +LLLDE SAL
Sbjct: 112 AIARQMGIEDLLARLPG-----------QLSGGQRQRVALARCLVREQPILLLDEPFSAL 160
Query: 1484 D--LESE--KHVQDALRKVSKRATTIVVAHRLSTIREANMIA----VVRDGAVVEYGSHE 1535
D L E V ++ ++ T ++V+H L +A IA VV DG + G +
Sbjct: 161 DPALRQEMLTLVSQVCQE--RQLTLLMVSHSLE---DAARIAPRSLVVADGRIAWDGPTD 215
Query: 1536 TLLASH 1541
LL+
Sbjct: 216 ELLSGK 221
|
Length = 232 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 1e-23
Identities = 78/231 (33%), Positives = 121/231 (52%), Gaps = 22/231 (9%)
Query: 691 LRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGL-----ITLDGHDLKSLQVK 745
++++NL + AL+G SG GK+T I R +D T G I LDG D+ +V
Sbjct: 20 VKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVD 79
Query: 746 --WLRTQIGMVGQEPILFAT-SILENVLMGKENATMKEAVAACKAASAHSFISELPLGYD 802
+R ++GMV Q+P F T S+ +NV+ G + A +++ + A + L +D
Sbjct: 80 PVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAAL---WD 136
Query: 803 TQVGDR----GTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKIS 858
+V DR T LSGGQ+QR+ +ARA+ +P ILL+DEPTSALD S + ++ + +
Sbjct: 137 -EVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLK 195
Query: 859 VGRTTIVIAHRL-ATVKNANTIVVLDQGSVVEIGNHRQLL-----ERGGAY 903
T I++ H + + ++T G +VE G QL ER AY
Sbjct: 196 KVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLFTNPRDERTEAY 246
|
Length = 252 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 1e-23
Identities = 67/222 (30%), Positives = 110/222 (49%), Gaps = 25/222 (11%)
Query: 1319 VTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGV 1378
++ +Y +P + L+D L + G +V ++G SG GK+T++ LI F P++G + + G
Sbjct: 9 LSLSYEGKP-RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNG- 66
Query: 1379 DLREINVKWLRKQTALVGQEPALFAG-TIRDNIALGNPKASWAEIEEAAEEAYIHKFISS 1437
R I + +V Q AL + DN+A G IE+A H+ ++
Sbjct: 67 --RRIEGPGAER--GVVFQNEALLPWLNVIDNVAFG---LQLRGIEKAQRREIAHQMLAL 119
Query: 1438 LP-QGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALR 1496
+ +G E + QLSGG +QR+ IARA+ ++LLLDE ALD + + +Q+ L
Sbjct: 120 VGLEGAEHK---YIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLL 176
Query: 1497 KVSKR--ATTIVVAHRLSTIREANMIA---VV---RDGAVVE 1530
+ + +++ H I EA +A VV G VVE
Sbjct: 177 DLWQETGKQVLLITH---DIEEALFLATRLVVLSPGPGRVVE 215
|
Length = 259 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 2e-23
Identities = 67/213 (31%), Positives = 109/213 (51%), Gaps = 24/213 (11%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
IE V+ YP L D L ++ G + L G SG+GK+T++ L+ P++G+V
Sbjct: 2 IEFHNVSKAYPGGVAA--LHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQV 59
Query: 1374 MIEGVD---LREINVKWLRKQTALVGQEPALF-AGTIRDNIAL-----GNPKASWAE-IE 1423
I G D LR + LR++ +V Q+ L T+ +N+AL G + +
Sbjct: 60 RIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVG 119
Query: 1424 EAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSAL 1483
A + + + P+ QLSGG++QR+AIARAI+ +LL DE + L
Sbjct: 120 AALRQVGLEHKADAFPE-----------QLSGGEQQRVAIARAIVNSPPLLLADEPTGNL 168
Query: 1484 DLESEKHVQDALRKVSKRATTIVVA-HRLSTIR 1515
D + + + D L++++KR TT++VA H LS +
Sbjct: 169 DPDLSERILDLLKRLNKRGTTVIVATHDLSLVD 201
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 2e-23
Identities = 68/232 (29%), Positives = 121/232 (52%), Gaps = 12/232 (5%)
Query: 673 IEFKGVTFAY-PSRP-ETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKG 730
I+ + +T Y P E L ++N+ I + + L+G +G GKST+ + PT G
Sbjct: 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSG 62
Query: 731 LITLDGHDL--KSLQVKWLRTQIGMVGQEP--ILFATSILENVLMGKENATMKEAVAACK 786
I +DG D+ K +++ +R ++G+V Q P LF +I +++ G N + E +
Sbjct: 63 KIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENR 122
Query: 787 AASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSES 846
A + + L Y+ +LSGGQK+R+A+A + +P+IL+LDEPT+ LD +
Sbjct: 123 VKRAMNIVG---LDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKG 179
Query: 847 ESIVQQAIDKI--SVGRTTIVIAHRLATV-KNANTIVVLDQGSVVEIGNHRQ 895
+ I ++ T I+++H + V K A+ I+V+++G G R+
Sbjct: 180 RDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPRE 231
|
Length = 287 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 2e-23
Identities = 60/239 (25%), Positives = 103/239 (43%), Gaps = 57/239 (23%)
Query: 1314 IELKMVTFTYPSR------PEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYD 1367
+E+K + +P V + +K G + LVG SG GKST+ LI +
Sbjct: 5 LEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE 64
Query: 1368 PNQGKVMIEGVDLREIN----VKWLRKQTALVGQEPALFAGTIRDNIALGNPKASWAEIE 1423
P G+++ EG D+ +++ + + + VG P F
Sbjct: 65 PTSGEILFEGKDITKLSKEERRERVLELLEKVG-LPEEFLYR------------------ 105
Query: 1424 EAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSAL 1483
Y H +LSGGQ+QRI IARA+ ++++ DE SAL
Sbjct: 106 ------YPH-------------------ELSGGQRQRIGIARALALNPKLIVADEPVSAL 140
Query: 1484 DLESEKHVQDALRKV-SKRATTIV-VAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLA 1539
D+ + + + L+ + + T + ++H LS +R ++ IAV+ G +VE G E + +
Sbjct: 141 DVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFS 199
|
Length = 268 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (257), Expect = 2e-23
Identities = 73/232 (31%), Positives = 116/232 (50%), Gaps = 9/232 (3%)
Query: 674 EFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGL-- 731
E + F Y +R + V L LNL I +K A +G SG GKST + + D +G
Sbjct: 82 EIRNFNFWYMNRTKHV-LHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSH 140
Query: 732 ---ITLDGHDLKSLQVKWL--RTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACK 786
I G + +S ++ L RT+IGMV Q+P F SI +NV G N + + K
Sbjct: 141 EGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEK 200
Query: 787 AASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSES 846
+ L + G LSGGQ+QR+ +ARA+ +P +LL+DEPTSALD +
Sbjct: 201 IVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIA 260
Query: 847 ESIVQQAIDKISVGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLL 897
+ +++ I ++ + I++ H +A + ++ V QG + E G + +
Sbjct: 261 TAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIF 312
|
Length = 329 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 2e-23
Identities = 75/248 (30%), Positives = 120/248 (48%), Gaps = 29/248 (11%)
Query: 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPN--Q 1370
GI + + Y + TVL D L+++ G ++AL+G SG GK+T++ I F
Sbjct: 5 GIRIDHLRVAYGAN---TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLT 61
Query: 1371 GKVMIEGVDLREINVKWLRKQTALVGQEPALFAG-TIRDNIALG-----NPKASWAE-IE 1423
G++ I DL + ++ AL+ Q ALF + DN+A G PKA AE +
Sbjct: 62 GRIAIADRDL--THAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVA 119
Query: 1424 EAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSAL 1483
+A + + + LP QLSGG +QRIAIARAI VLLLDE SAL
Sbjct: 120 DALKLVGLGDAAAHLPA-----------QLSGGMQQRIAIARAIAIEPDVLLLDEPLSAL 168
Query: 1484 DLESEKHVQDALRKVSKR---ATTIVVAH-RLSTIREANMIAVVRDGAVVEYGSHETLLA 1539
D ++++ + + + T + V H + + A+ +++DG + +G + L
Sbjct: 169 DANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYD 228
Query: 1540 SHLNGVYA 1547
+ +G A
Sbjct: 229 APADGFAA 236
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 3e-23
Identities = 76/278 (27%), Positives = 126/278 (45%), Gaps = 46/278 (16%)
Query: 657 DPY-----NSE--GRKLSSVSGK---IEFKGVTFAYPSRP--------ETVILRSLNLVI 698
PY +E G +E + + +P + + ++L +
Sbjct: 251 HPYTRKLLAAEPSGDPPPLPEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTL 310
Query: 699 PSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSL---QVKWLRTQIGMVG 755
+TL LVG SG GKST+ + R P++G I DG D+ L +++ LR ++ +V
Sbjct: 311 RRGQTLGLVGESGSGKSTLGLALLRL-IPSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVF 369
Query: 756 QEP-------ILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDR 808
Q+P + I E + + + + E A + E+ G D +R
Sbjct: 370 QDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEA-----LEEV--GLDPATRNR 422
Query: 809 -GTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISV-----GRT 862
+ SGGQ+QRIA+ARA+I P ++LLDEPTSALD S+ Q +D + G +
Sbjct: 423 YPHEFSGGQRQRIAIARALILKPELILLDEPTSALD---RSVQAQVLDLLRDLQQKHGLS 479
Query: 863 TIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLER 899
+ I+H LA V+ + ++V+ G +VE G +
Sbjct: 480 YLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFAN 517
|
Length = 534 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 99.7 bits (248), Expect = 3e-23
Identities = 62/210 (29%), Positives = 107/210 (50%), Gaps = 12/210 (5%)
Query: 1327 PEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV----MIEGVDLRE 1382
+ L + +++ G + +VG G GKS+++ I +GKV E E
Sbjct: 12 SGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFE 71
Query: 1383 INVKWLRKQTALVGQEPALFAGTIRDNIALGNP--KASWAEIEEAAEEAYIHKFISSLPQ 1440
R A Q+P L T+ +NI G+P K + + +A + I LP
Sbjct: 72 ATRSRNRYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACS---LQPDIDLLPF 128
Query: 1441 GYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHV-QDALRKVS 1499
G +T++GE G+ LSGGQ+QRI +ARA+ + + ++ LD+ SALD+ H+ Q+ + K
Sbjct: 129 GDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFL 188
Query: 1500 K--RATTIVVAHRLSTIREANMIAVVRDGA 1527
+ + T ++V H+L + A+ I ++DG+
Sbjct: 189 QDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 3e-23
Identities = 71/210 (33%), Positives = 109/210 (51%), Gaps = 13/210 (6%)
Query: 694 LNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIGM 753
++L I + AL+G SG GKST+ ++ F PT G I LDG DL V + I M
Sbjct: 38 VSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLS--HVPPYQRPINM 95
Query: 754 VGQEPILFATSILE-NVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGT-Q 811
+ Q LF +E N+ G + + +A A + L L + + R Q
Sbjct: 96 MFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEM------LGLVHMQEFAKRKPHQ 149
Query: 812 LSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKI--SVGRTTIVIAH- 868
LSGGQ+QR+ALAR++ K P++LLLDEP ALD + +Q + I VG T +++ H
Sbjct: 150 LSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHD 209
Query: 869 RLATVKNANTIVVLDQGSVVEIGNHRQLLE 898
+ + A I ++++G V+IG ++ E
Sbjct: 210 QEEAMTMAGRIAIMNRGKFVQIGEPEEIYE 239
|
Length = 377 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 4e-23
Identities = 70/238 (29%), Positives = 126/238 (52%), Gaps = 17/238 (7%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYD-----P 1368
+E+K ++ Y + V D + ++ ++ AL+G SG GKST + I R D
Sbjct: 22 LEVKDLSIYYGEKRAV---NDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSAR 78
Query: 1369 NQGKVMIEGVDL--REINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKASW---AEIE 1423
++G+++ EG+++ INV LR++ +V Q+P F +I +NI A + ++
Sbjct: 79 SEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLD 138
Query: 1424 EAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSAL 1483
E EE+ ++L + ++ S + LSGGQ+QR+ IAR + VLLLDE +SAL
Sbjct: 139 EIVEESLTK---AALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASAL 195
Query: 1484 DLESEKHVQDALRKVSKRATTIVVAHRL-STIREANMIAVVRDGAVVEYGSHETLLAS 1540
D S +++ + ++ + + I+V H + +R ++ A +G +VEY E + S
Sbjct: 196 DPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIFTS 253
|
Length = 268 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 5e-23
Identities = 69/219 (31%), Positives = 114/219 (52%), Gaps = 17/219 (7%)
Query: 1332 LKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDP-----NQGKVMIEGVDL--REIN 1384
L D L + ++ A +G SG GKST + + R D GK+ ++G D+ ++
Sbjct: 35 LFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLD 94
Query: 1385 VKWLRKQTALVGQEPALFAGTIRDNIALGNPK-----ASWAEIEEAAEEAYIHKFISSLP 1439
V LR + +V Q+P F +I +N+A G P+ S AE++E E + + K + L
Sbjct: 95 VVELRARVGMVFQKPNPFPKSIYENVAYG-PRIHGLARSKAELDEIVETS-LRK--AGLW 150
Query: 1440 QGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVS 1499
+ + ++ E G LSGGQ+QR+ IARAI V+L+DE SALD + V++ + ++
Sbjct: 151 EEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELR 210
Query: 1500 KRATTIVVAHRLS-TIREANMIAVVRDGAVVEYGSHETL 1537
+ T ++V H + R + A G +VE G E +
Sbjct: 211 QNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEKM 249
|
Length = 267 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 98.4 bits (245), Expect = 5e-23
Identities = 69/210 (32%), Positives = 108/210 (51%), Gaps = 29/210 (13%)
Query: 695 NLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIGMV 754
+L + + +A++G SG GKST+ LI F +P G I ++ L + + M+
Sbjct: 18 DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPY--QRPVSML 75
Query: 755 GQEPILFA-TSILENVLMG-----KENATMKEAV--AACKAASAHSFISELPLGYDTQVG 806
QE LFA ++ +N+ +G K NA +E V AA + A ++ LP
Sbjct: 76 FQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIA-DYLDRLP-------- 126
Query: 807 DRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALD----SESESIVQQAIDKISVGRT 862
QLSGGQ+QR+ALAR +++ ILLLDEP SALD E ++V+Q + RT
Sbjct: 127 ---EQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQ--RT 181
Query: 863 TIVIAHRLA-TVKNANTIVVLDQGSVVEIG 891
+++ H L+ A+ I V+ QG + +
Sbjct: 182 LLMVTHHLSDARAIASQIAVVSQGKIKVVS 211
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 5e-23
Identities = 82/275 (29%), Positives = 140/275 (50%), Gaps = 29/275 (10%)
Query: 673 IEFKGVTFAYPS-RP-ETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKG 730
I + V++ Y + P E L +NL I A +G +G GKST+ L+ + PT+G
Sbjct: 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQG 62
Query: 731 LITLDGHDL----KSLQVKWLRTQIGMVGQ--EPILFATSILENVLMGKEN--ATMKEAV 782
+ +D + K+ +K +R ++G+V Q E LF ++L++V G +N + +EA
Sbjct: 63 SVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAE 122
Query: 783 AACKAASAHSFISELPLGYDTQVGDRGT-QLSGGQKQRIALARAMIKDPRILLLDEPTSA 841
A + A ISE + ++ +LSGGQ +R+A+A + +P+IL+LDEPT+
Sbjct: 123 ALAREKLALVGISE-------SLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAG 175
Query: 842 LDSESESIVQQAIDKISVGRTTIV-IAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLER 899
LD + + K+ TIV + H + V N A+ + VL++G +V G + +
Sbjct: 176 LDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI--- 232
Query: 900 GGAYHDLVKLASEAVSQP---QSKQKDAKRGIEFS 931
+ D+ L + + P + Q+ A RGI FS
Sbjct: 233 ---FQDVDFLEEKQLGVPKITKFAQRLADRGISFS 264
|
Length = 280 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 5e-23
Identities = 72/219 (32%), Positives = 113/219 (51%), Gaps = 36/219 (16%)
Query: 702 KTLALVGTSGGGKSTV---FALIERFYDPTKGLITLDGHDLKS---LQVKWLRTQIGMVG 755
KTLA+VG SG GKST+ +IE PT G + G DL K LR +I +V
Sbjct: 42 KTLAVVGESGCGKSTLARLLTMIET---PTGGELYYQGQDLLKADPEAQKLLRQKIQIVF 98
Query: 756 QEPILFAT--------SILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGD 807
Q P + + ILE L N ++ AA + A + ++++ G + D
Sbjct: 99 QNP--YGSLNPRKKVGQILEEPL--LINTSLS---AAERREKALAMMAKV--GLRPEHYD 149
Query: 808 RGTQL-SGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAID-----KISVGR 861
R + SGGQ+QRIA+ARA++ DP +++ DEP SALD S+ Q ++ + +G
Sbjct: 150 RYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDV---SVQAQVLNLMMDLQQELGL 206
Query: 862 TTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLER 899
+ + I+H L+ V++ A+ ++V+ G VE G Q+
Sbjct: 207 SYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQIFNN 245
|
Length = 327 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 5e-23
Identities = 75/223 (33%), Positives = 114/223 (51%), Gaps = 12/223 (5%)
Query: 1314 IELKMVTFTYPSRPE-VTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGK 1372
+ELK + +YPS E V VLK L + G MVA+VG SGSGKST++ ++ P G
Sbjct: 5 LELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGT 64
Query: 1373 VMIEGVDLREINVKWL----RKQTALVGQEPALFAG-TIRDNIALGNPKASWAEIEEAAE 1427
+ G D+ ++ L R+ + Q L + T N+ + A +A +E
Sbjct: 65 YRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEV---PAVYAGLERKQR 121
Query: 1428 EAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLES 1487
+ + L G E +V QLSGGQ+QR++IARA++ G +V+L DE + ALD S
Sbjct: 122 LLRAQELLQRL--GLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHS 179
Query: 1488 EKHVQDALRKVSKRA-TTIVVAHRLSTIREANMIAVVRDGAVV 1529
+ V L ++ R T I+V H +A + +RDG +V
Sbjct: 180 GEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIV 222
|
Length = 648 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 6e-23
Identities = 65/215 (30%), Positives = 115/215 (53%), Gaps = 13/215 (6%)
Query: 1328 EVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYD-----PNQGKVMIEGVDLRE 1382
+ L D + + + A++G SG GKST + I R D +G++ G ++ +
Sbjct: 51 DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYD 110
Query: 1383 INVK--WLRKQTALVGQEPALFAGTIRDNIALG-NPKASWAEIEEAAEEAYIHKFISSLP 1439
+V LR++ +V Q+P F +I DN+A G + +I+E EE+ ++L
Sbjct: 111 ADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRR---AALW 167
Query: 1440 QGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVS 1499
+ Q+ SG+ LSGGQ+QR+ IARAI V+L+DE +SALD + ++D + +++
Sbjct: 168 DEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELA 227
Query: 1500 KRATTIVVAHRL-STIREANMIAV-VRDGAVVEYG 1532
+ T ++V H + R ++ AV + G +VE+
Sbjct: 228 EEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFD 262
|
Length = 285 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 99.3 bits (247), Expect = 6e-23
Identities = 69/214 (32%), Positives = 105/214 (49%), Gaps = 26/214 (12%)
Query: 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYD----- 726
K+E K + Y E L +NL I +K AL+G SG GKST + R D
Sbjct: 4 KMESKNLNLWYG---EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNV 60
Query: 727 PTKGLITLDGHDL--KSLQVKWLRTQIGMVGQEPILFATSILENVLMG------KENATM 778
+G + LDG ++ K + V LR ++GMV Q+P F SI +NV G K+ +
Sbjct: 61 KIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKEL 120
Query: 779 KEAV--AACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLD 836
+ V A KAA +L +LSGGQ+QR+ +AR + P ++L+D
Sbjct: 121 DKIVEWALKKAALWDEVKDDL--------KKSALKLSGGQQQRLCIARTIAVKPDVILMD 172
Query: 837 EPTSALDSESESIVQQAIDKISVGRTTIVIAHRL 870
EPTSALD S ++ + ++ T +++ H +
Sbjct: 173 EPTSALDPISTLKIEDLMVELKKEYTIVIVTHNM 206
|
Length = 251 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 99.4 bits (248), Expect = 6e-23
Identities = 67/239 (28%), Positives = 111/239 (46%), Gaps = 25/239 (10%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
+E +T +Y S+ +R ++ + L+G +G GK+T+ +I P G +
Sbjct: 2 LEVTDLTKSYGSK--VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKV 59
Query: 733 TLDGHDLKSLQVKWLRTQIGMV-GQEPILFATSILENV-----LMGKENATMKEAVAACK 786
T+DG D +R +IG++ G+ + + EN+ L G +K
Sbjct: 60 TIDGVDTVRDPSF-VRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIK------- 111
Query: 787 AASAHSFISELPLG--YDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDS 844
A L L D +VG + S G KQ++A+ARA++ DP IL+LDEPTS LD
Sbjct: 112 -ARIAELSKRLQLLEYLDRRVG----EFSTGMKQKVAIARALVHDPSILVLDEPTSGLDI 166
Query: 845 ESESIVQQAIDKI-SVGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLERGG 901
+ I ++ + GR I +H + V+ + ++VL +G VV G+ L R
Sbjct: 167 RTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDARTV 225
|
Length = 245 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 7e-23
Identities = 77/249 (30%), Positives = 133/249 (53%), Gaps = 20/249 (8%)
Query: 669 VSGKIEFKGVTFAY----PSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERF 724
+G + F+GV Y P ++LR ++ I + + +VG +G GKST+ R
Sbjct: 1305 QAGSLVFEGVQMRYREGLP-----LVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRM 1359
Query: 725 YDPTKGLITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAA 784
+ G I ++G ++ + ++ LR Q M+ Q+P+LF ++ +NV E A+ E AA
Sbjct: 1360 VEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLE-ASSAEVWAA 1418
Query: 785 CKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIK-DPRILLLDEPTS--- 840
+ ++ G D++V + G+ S GQ+Q + +ARA++K +L+DE T+
Sbjct: 1419 LELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANID 1478
Query: 841 -ALDSESESIVQQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLE- 898
ALD + ++ V A +V I IAHRL TV + I+V+D G+V E+G+ R+L+
Sbjct: 1479 PALDRQIQATVMSAFSAYTV----ITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMN 1534
Query: 899 RGGAYHDLV 907
R +H +V
Sbjct: 1535 RQSIFHSMV 1543
|
Length = 1560 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 96.2 bits (240), Expect = 8e-23
Identities = 34/77 (44%), Positives = 52/77 (67%), Gaps = 2/77 (2%)
Query: 811 QLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISV-GRTTIVIAHR 869
QLSGGQ+QR+ALARA++ +P +LLLDEPTS LD S + + + +++ GRT I++ H
Sbjct: 80 QLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHD 139
Query: 870 LATVKNA-NTIVVLDQG 885
+ A + ++VL G
Sbjct: 140 PELAELAADRVIVLKDG 156
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 8e-23
Identities = 69/233 (29%), Positives = 119/233 (51%), Gaps = 23/233 (9%)
Query: 1314 IELKMVT-FTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGK 1372
I+L +T + + L + L V G + ++G SG+GKST+I + P G
Sbjct: 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGS 61
Query: 1373 VMIEGVDLREINVKWL---RKQTALVGQEPALFAG-TIRDNIAL-----GNPKASWAEIE 1423
V+++G DL ++ L R+Q ++ Q L + T+ N+AL PK EI+
Sbjct: 62 VIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKD---EIK 118
Query: 1424 EAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSAL 1483
E + Y + LSGGQKQR+AIARA+ +VLL DEA+SAL
Sbjct: 119 RKVTELLALVGLGDKHDSYPSN-------LSGGQKQRVAIARALASNPKVLLCDEATSAL 171
Query: 1484 DLESEKHVQDALRKVSKR--ATTIVVAHRLSTI-REANMIAVVRDGAVVEYGS 1533
D + + + + L+++++R T +++ H + + R + +AV+ +G ++E G+
Sbjct: 172 DPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGT 224
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 99 bits (249), Expect = 8e-23
Identities = 65/223 (29%), Positives = 119/223 (53%), Gaps = 25/223 (11%)
Query: 1331 VLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRK 1390
VLK+ LK++ G M+A+ G +GSGK++++ LI +P++GK+ G
Sbjct: 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG------------- 98
Query: 1391 QTALVGQEPALFAGTIRDNIALGNPKASWAEI--EEAAEEAYIHKFISSLPQGYETQVGE 1448
+ + Q + GTI++NI G S+ E + + + + I+ P+ T +GE
Sbjct: 99 RISFSSQFSWIMPGTIKENIIFG---VSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGE 155
Query: 1449 SGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDA-LRKVSKRATTIVV 1507
G+ LSGGQ+ RI++ARA+ K + + LLD LD+ +EK + ++ + K+ T I+V
Sbjct: 156 GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILV 215
Query: 1508 AHRLSTIREANMIAVVRDGAVVEYGSHETL------LASHLNG 1544
++ +++A+ I ++ +G+ YG+ L +S L G
Sbjct: 216 TSKMEHLKKADKILILHEGSSYFYGTFSELQSLRPDFSSKLMG 258
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 99.8 bits (249), Expect = 8e-23
Identities = 70/228 (30%), Positives = 119/228 (52%), Gaps = 17/228 (7%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
+E + + ++YP E LK K + G MVAL+G +G+GKST+ P G+V
Sbjct: 2 LETRDLKYSYPDGTEA--LKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEV 59
Query: 1374 MIEGVDLREINVKWL--RKQTALVGQEP--ALFAGTIRDNIALG--NPKASWAEIEEAAE 1427
+I+G ++ L RK +V Q P LFA T+ +++A G N S E+E+ +
Sbjct: 60 LIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVK 119
Query: 1428 EAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLES 1487
EA K + +G+E + LSGGQK+R+AIA + +++LDE +S LD
Sbjct: 120 EAL--KAVGM--EGFENKPPH---HLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMG 172
Query: 1488 EKHVQDALRKVSKRATTIVVA-HRLSTI-REANMIAVVRDGAVVEYGS 1533
+ L ++K TI+++ H + + A+ + V+ DG +++ G+
Sbjct: 173 ASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGT 220
|
Length = 275 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 99.3 bits (247), Expect = 9e-23
Identities = 68/228 (29%), Positives = 112/228 (49%), Gaps = 25/228 (10%)
Query: 687 ETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTK-----GLITLDGHDL-- 739
E L+++++ IP + AL+G SG GKST + R D K G ++++G D+
Sbjct: 24 EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYE 83
Query: 740 KSLQVKWLRTQIGMVGQEPILFATSILENVLMGKE--NATMKEAVAACKAASAHSFISEL 797
+ V LR +GMV Q+P F SI +NV G A K+ + A + + +
Sbjct: 84 PDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWD- 142
Query: 798 PLGYDTQVGDR----GTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQA 853
+ DR LSGGQ+QR+ +AR + P+I+L DEPTSALD S + ++
Sbjct: 143 ------ETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDL 196
Query: 854 IDKISVGRTTIVIAHRL---ATVKNANTIVVLDQGSVVEIGNHRQLLE 898
I + T +++ H + A + + ++ G ++E G RQ+
Sbjct: 197 IMNLKKDYTIVIVTHNMQQAARISDYTGFFLM--GELIEFGQTRQIFH 242
|
Length = 258 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 99.8 bits (249), Expect = 9e-23
Identities = 71/238 (29%), Positives = 114/238 (47%), Gaps = 25/238 (10%)
Query: 673 IEFKGVTFAYPSRPE---TVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTK 729
I+ K V++ Y S E + L +NL + + L ++G +G GKST+ + P++
Sbjct: 5 IKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSE 64
Query: 730 GLITLDGHDLKSLQVKW-LRTQIGMVGQEP--ILFATSILENVLMGKEN-----ATMKEA 781
G + +DG D + W +R + GMV Q P + AT + E+V G EN ++E
Sbjct: 65 GKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRER 124
Query: 782 VAAC-KAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTS 840
V K + + P LSGGQKQR+A+A + P ++ DEPT+
Sbjct: 125 VDESLKKVGMYEYRRHAP-----------HLLSGGQKQRVAIAGILAMRPECIIFDEPTA 173
Query: 841 ALDSESESIVQQAIDKIS--VGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQL 896
LD V I +++ G T I+I H + A+ I+V+D G VV G +++
Sbjct: 174 MLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEI 231
|
Length = 280 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 98.7 bits (246), Expect = 1e-22
Identities = 72/225 (32%), Positives = 116/225 (51%), Gaps = 25/225 (11%)
Query: 689 VILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI-----TLDGHDLKSLQ 743
+L ++L + + +A++G SG GK+T+ I P G I T+D S Q
Sbjct: 17 TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQ 76
Query: 744 ---VKWLRTQIGMVGQEPILFA-TSILENVLMGKENATMKEAVAACKAASAHSFISELPL 799
++ LR +G V Q LF ++LEN++ G +K A A ++++ L
Sbjct: 77 KGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGP--VIVKGEPKEEATARARELLAKVGL 134
Query: 800 -GYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSE-----SESIVQQA 853
G +T R LSGGQ+QR+A+ARA+ P ++L DEPTSALD E +I Q A
Sbjct: 135 AGKETSYPRR---LSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLA 191
Query: 854 IDKISVGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLL 897
+K RT +++ H ++ ++ A+ + +DQG +VE G + L
Sbjct: 192 QEK----RTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALF 232
|
Length = 250 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 97.6 bits (243), Expect = 1e-22
Identities = 53/169 (31%), Positives = 92/169 (54%), Gaps = 6/169 (3%)
Query: 688 TVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWL 747
IL +++L + + + +A+ G SG GKST+ ++ PT G + +G D+ +L+ +
Sbjct: 16 AKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAY 75
Query: 748 RTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGD 807
R Q+ Q P LF ++ +N++ + + AA ++ L D+ +
Sbjct: 76 RQQVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAALD-----LLARFALP-DSILTK 129
Query: 808 RGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDK 856
T+LSGG+KQRIAL R + P+ILLLDE TSALD ++ +++ I +
Sbjct: 130 NITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHR 178
|
Length = 223 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 98.6 bits (245), Expect = 1e-22
Identities = 70/238 (29%), Positives = 115/238 (48%), Gaps = 15/238 (6%)
Query: 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPT--- 728
KI+ +GV F Y +L+++N+ P + A++G SG GKST+ + R D
Sbjct: 4 KIKIRGVNFFYHKHQ---VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGA 60
Query: 729 --KGLITLDGHDLKS--LQVKWLRTQIGMVGQEPILFATSILENVLMGKE--NATMKEAV 782
+G + LD ++ S L V LR ++GMV Q+P F SI +NV G T + +
Sbjct: 61 RLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRL 120
Query: 783 AACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSAL 842
S + L + G LSGGQ+QR+ +AR + +P ++L+DEP SAL
Sbjct: 121 DEVVEKSLRQ--AALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSAL 178
Query: 843 DSESESIVQQAIDKISVGRTTIVIAHRLATVKNANTIV-VLDQGSVVEIGNHRQLLER 899
D S +++ + ++ T ++ H + A+ L G +VE G ++ R
Sbjct: 179 DPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIFSR 236
|
Length = 251 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 99 bits (249), Expect = 2e-22
Identities = 65/225 (28%), Positives = 116/225 (51%), Gaps = 21/225 (9%)
Query: 1332 LKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYD-----PNQGKVMIEGVDLRE--IN 1384
LK + + S+ AL+G SG GKST + + R D G V ++G D+ + +N
Sbjct: 61 LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120
Query: 1385 VKWLRKQTALVGQEPALFAGTIRDNIALGNPKAS----------WAEIEEAAEEAYIHKF 1434
+ LRK+ +V Q P F +IR+NI+ G K ++ AE+ + +
Sbjct: 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERS 180
Query: 1435 I--SSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQ 1492
+ ++L ++ ++ + LSGGQ+QR+ IAR + V+L+DE +SALD + ++
Sbjct: 181 LRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIE 240
Query: 1493 DALRKVSKRATTIVVAHRL-STIREANMIAV-VRDGAVVEYGSHE 1535
D + ++++ T +VV H + R ++ AV + G +VEY +
Sbjct: 241 DLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGGELVEYDDTD 285
|
Length = 305 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 98.7 bits (246), Expect = 2e-22
Identities = 65/237 (27%), Positives = 114/237 (48%), Gaps = 20/237 (8%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
I FK V+F Y S + L+ ++ IP + ++VG +G GKST+ L+ G I
Sbjct: 8 IVFKNVSFQYQS-DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEI 66
Query: 733 TLDGHDLKSLQVKWLRTQIGMVGQEPI-LFATSILE-NVLMGKENAT-----MKEAVAAC 785
+ + + LR IG+V Q P F SI++ +V G EN M V+
Sbjct: 67 FYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEA 126
Query: 786 KAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSE 845
+ ++ + + + LSGGQKQR+A+A + +P +++LDE TS LD +
Sbjct: 127 --------LKQVDM-LE-RADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPD 176
Query: 846 SESIVQQAIDKISVGR--TTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLERG 900
+ + + K+ T I I H L+ A+ ++V+++G+V + G ++ +
Sbjct: 177 ARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDHA 233
|
Length = 269 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 98.7 bits (246), Expect = 2e-22
Identities = 72/234 (30%), Positives = 113/234 (48%), Gaps = 22/234 (9%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
I K V+F Y S T LKD + G ++VG +GSGKST+ L+ G++
Sbjct: 8 IVFKNVSFQYQSDASFT-LKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEI 66
Query: 1374 MIEGVDLREINVKWLRKQTALVGQEPA-LFAGTI-RDNIALG--NPKASWAE----IEEA 1425
+ + N + LRK +V Q P F G+I + ++A G N + E + EA
Sbjct: 67 FYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEA 126
Query: 1426 AEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDL 1485
++ + + P LSGGQKQR+AIA + V++LDEA+S LD
Sbjct: 127 LKQVDMLERADYEPNA-----------LSGGQKQRVAIAGVLALNPSVIILDEATSMLDP 175
Query: 1486 ESEKHVQDALRKV--SKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETL 1537
++ +++ D +RKV T I + H LS EA+ + V+ G V + G+ +
Sbjct: 176 DARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEI 229
|
Length = 269 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 3e-22
Identities = 69/229 (30%), Positives = 108/229 (47%), Gaps = 26/229 (11%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
+E +G++ ++ L ++L + + AL+G +G GKST+ ++ Y P G I
Sbjct: 9 LELRGISKSFGG---VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEI 65
Query: 733 TLDGHDLKSLQVKWLRTQ-IGMVGQEPILFAT-SILENVLMGKENAT------MKEAVAA 784
+DG + + I V QE L S+ EN+ +G+E K
Sbjct: 66 LIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRR 125
Query: 785 CKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALD- 843
+ A + P DT VGD LS Q+Q + +ARA+ D R+L+LDEPT+AL
Sbjct: 126 ARELLARLGLDIDP---DTLVGD----LSIAQRQMVEIARALSFDARVLILDEPTAALTV 178
Query: 844 SESE---SIVQQAIDKISVGRTTIVIAHRLATVK-NANTIVVLDQGSVV 888
E+E ++++ + G I I+HRL V A+ I VL G VV
Sbjct: 179 KETERLFDLIRRLKAQ---GVAIIYISHRLDEVFEIADRITVLRDGRVV 224
|
Length = 500 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 3e-22
Identities = 76/219 (34%), Positives = 109/219 (49%), Gaps = 33/219 (15%)
Query: 1330 TVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLR 1389
T LKD L VK G V L+G SG GK+T++ +I G + G D+ + + +
Sbjct: 18 TALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--K 75
Query: 1390 KQTALVGQEPALFAG-TIRDNIALG--NPKASWAEIEEAAEEAYIHKFISSLPQGYETQV 1446
+ +V Q ALF T+ DNIA G N AE+ E E + L V
Sbjct: 76 RDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAE------LLDL-------V 122
Query: 1447 GESGV------QLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSK 1500
G G QLSGGQ+QR+A+ARA+ +LLLDE SALD +H++ +R++ +
Sbjct: 123 GLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQR 182
Query: 1501 R--ATTIVVAH----RLSTIREANMIAVVRDGAVVEYGS 1533
R TTI+V H LS A+ I V+ G + + G+
Sbjct: 183 RLGVTTIMVTHDQEEALSM---ADRIVVMNHGVIEQVGT 218
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 96.5 bits (240), Expect = 3e-22
Identities = 53/192 (27%), Positives = 95/192 (49%), Gaps = 25/192 (13%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
+ELK V + +L + L V+ G +A+ G SG GKST++ ++ P G +
Sbjct: 4 LELKQVGYLAGDAK---ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTL 60
Query: 1374 MIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALG--------NPKASWAEIEEA 1425
+ EG D+ + + R+Q + Q PALF T+ DN+ + A+ +
Sbjct: 61 LFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARF 120
Query: 1426 AEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDL 1485
A I + ++ +LSGG+KQRIA+ R + ++LLLDE +SALD
Sbjct: 121 ALPDSI--------------LTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDE 166
Query: 1486 ESEKHVQDALRK 1497
+++++++ + +
Sbjct: 167 SNKRNIEEMIHR 178
|
Length = 223 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 97.9 bits (244), Expect = 3e-22
Identities = 70/219 (31%), Positives = 106/219 (48%), Gaps = 24/219 (10%)
Query: 665 KLSSVSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERF 724
K S + I + VT +Y + ++++ IP K AL+G SG GKSTV + R
Sbjct: 6 KKISKNIIISLQNVTISYGT---FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRM 62
Query: 725 YD-----PTKGLITLDGHDLKSLQVK--WLRTQIGMVGQEPILFATSILENVLMGKE--- 774
D KG + DG DL +V +R +IGMV Q+P F SI EN+ G
Sbjct: 63 NDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARING 122
Query: 775 -NATMKEAVAAC--KAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPR 831
M E V KAA +L + G LSGGQ+QR+ +AR + +P
Sbjct: 123 YTGDMDELVERSLRKAAVWDECKDKL--------NESGYSLSGGQQQRLCIARTIAIEPE 174
Query: 832 ILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRL 870
++L+DEP SALD S +++ + ++ T +++ H +
Sbjct: 175 VILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNM 213
|
Length = 269 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 97.9 bits (244), Expect = 3e-22
Identities = 70/222 (31%), Positives = 115/222 (51%), Gaps = 25/222 (11%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYD--PN-- 1369
I L+ VT +Y + V K+ + G + AL+G SG GKSTV+ + R D
Sbjct: 14 ISLQNVTISYGTFEAV---KNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCS 70
Query: 1370 -QGKVMIEGVDLREINVK--WLRKQTALVGQEPALFAGTIRDNIALGNPKASW-AEIEEA 1425
+G+V+ +G DL + V +R++ +V Q+P F +I +NIA G + +++E
Sbjct: 71 LKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDEL 130
Query: 1426 AEEAYIHKFISSLPQGY-----ETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEAS 1480
E SL + + ++ ESG LSGGQ+QR+ IAR I V+L+DE
Sbjct: 131 VE--------RSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPC 182
Query: 1481 SALDLESEKHVQDALRKVSKRATTIVVAHRL-STIREANMIA 1521
SALD S +++ + ++ K T ++V H + +R ++M A
Sbjct: 183 SALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTA 224
|
Length = 269 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 97.4 bits (242), Expect = 3e-22
Identities = 66/222 (29%), Positives = 112/222 (50%), Gaps = 22/222 (9%)
Query: 691 LRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYD-----PTKGLITLDGHDLKS--LQ 743
L+ ++L ++ AL+G SG GKST + R D G ++L G ++ +
Sbjct: 21 LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80
Query: 744 VKWLRTQIGMVGQEPILFATSILENVLMG------KENATMKEAV-AACKAASAHSFISE 796
V LR Q+GMV Q+P F SI ENV+ G K+ A + EAV + K A+ + +
Sbjct: 81 VVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKD 140
Query: 797 LPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDK 856
+ + LSGGQ+QR+ +AR + P ++LLDEPTSALD S + ++ + +
Sbjct: 141 -------HLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLE 193
Query: 857 ISVGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLL 897
+ T I++ H + ++ G+++E + +Q+
Sbjct: 194 LRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMF 235
|
Length = 252 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 97.3 bits (242), Expect = 3e-22
Identities = 74/243 (30%), Positives = 121/243 (49%), Gaps = 25/243 (10%)
Query: 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFA----LIERFYDP 727
KIE + + ++ +L +NL IP + AL+G SG GKST+ LIE + +
Sbjct: 3 KIEIRDLKVSFGQ---VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEA 59
Query: 728 -TKGLITLDGHDLKSLQVKWLRTQIGMVGQEPILFAT-SILENVLMG-KEN---ATMKEA 781
G + LDG D+ + V LR ++ MV Q P SI ENV +G K N + KE
Sbjct: 60 RVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKEL 119
Query: 782 VAACKAASAHSFISELPLGYDTQVGDR----GTQLSGGQKQRIALARAMIKDPRILLLDE 837
+ A + + + +V DR +LSGGQ+QR+ +ARA+ P +LL DE
Sbjct: 120 QERVRWALEKAQLWD-------EVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADE 172
Query: 838 PTSALDSESESIVQQAIDKISVGRTTIVIAHRLA-TVKNANTIVVLDQGSVVEIGNHRQL 896
PT+ LD E+ + ++ ++ T +++ H + ++ + L +G +VE G R++
Sbjct: 173 PTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREV 232
Query: 897 LER 899
Sbjct: 233 FTN 235
|
Length = 250 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 97.0 bits (241), Expect = 5e-22
Identities = 75/252 (29%), Positives = 127/252 (50%), Gaps = 32/252 (12%)
Query: 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGK 1372
I++K ++F Y + ++ + + + A++G SG GKST I + R + +G
Sbjct: 7 AIKVKDLSFYYNT---SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISEL-EGP 62
Query: 1373 VMIEGV---------DLREINVKWLRKQTALVGQEPALFAGTIRDNIALG------NPKA 1417
V +EGV D R IN+ LR+Q +V Q P F +I +N+A G P+A
Sbjct: 63 VKVEGVVDFFGQNIYDPR-ININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQA 121
Query: 1418 SWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLD 1477
EI E+A + ++L Q + ++ +S + LSGGQ+QR+ IARA+ +VLL+D
Sbjct: 122 DLDEIVESALKG------AALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMD 175
Query: 1478 EASSALDLESEKHVQDALRKVSKRATTIVVAHRL-STIREANMIAVV-----RDGAVVEY 1531
E SALD + V++ + + T +V H + R ++ A R G +VE+
Sbjct: 176 EPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEF 235
Query: 1532 GSHETLLASHLN 1543
G + ++ L+
Sbjct: 236 GVTTQIFSNPLD 247
|
Length = 259 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 97.1 bits (242), Expect = 5e-22
Identities = 69/214 (32%), Positives = 103/214 (48%), Gaps = 21/214 (9%)
Query: 670 SGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPT- 728
+ +I+ K + Y S + +NL I A +G SG GKSTV + R ++
Sbjct: 2 AKRIDVKDLNIYYGS---FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIP 58
Query: 729 ----KGLITLDGHDLKSLQVK--WLRTQIGMVGQEPILFAT-SILENVLMG-KENATMKE 780
+G + LDG DL V +R IGMV Q P F T SI +NV+ G K N +
Sbjct: 59 GARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNK 118
Query: 781 AVAACKAASAHSFISELPLGYDTQVGDR----GTQLSGGQKQRIALARAMIKDPRILLLD 836
+ L +V DR G LSGGQ+QR+ +ARA+ +P +LL+D
Sbjct: 119 KDLD---ELVEKSLRGANLW--NEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMD 173
Query: 837 EPTSALDSESESIVQQAIDKISVGRTTIVIAHRL 870
EP SALD S ++ I+++ T +++ H +
Sbjct: 174 EPCSALDPISTLAIEDLINELKQDYTIVIVTHNM 207
|
Length = 258 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 96.5 bits (241), Expect = 6e-22
Identities = 62/216 (28%), Positives = 101/216 (46%), Gaps = 19/216 (8%)
Query: 690 ILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERF--YDPTKGLITLDGHDLKSLQV-KW 746
IL+ +NL + + A++G +G GKST+ I Y+ T+G I DG D+ L +
Sbjct: 19 ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDER 78
Query: 747 LRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELP-----LGY 801
R I + Q P+ + L NA FI EL LG
Sbjct: 79 ARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGAR------GILPEFIKELKEKAELLGL 132
Query: 802 DTQVGDRGTQ--LSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKI-S 858
D + +R SGG+K+R + + ++ +P++ +LDEP S LD ++ IV + I+ +
Sbjct: 133 DEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALRE 192
Query: 859 VGRTTIVIAH--RLATVKNANTIVVLDQGSVVEIGN 892
GR ++I H RL + + VL G +V+ G+
Sbjct: 193 EGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGD 228
|
Length = 251 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 97.0 bits (241), Expect = 6e-22
Identities = 71/242 (29%), Positives = 118/242 (48%), Gaps = 27/242 (11%)
Query: 667 SSVSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYD 726
S K E + F Y L+++N+++ + AL+G SG GKST R +D
Sbjct: 11 SPTQQKSEVNKLNFYYGG---YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHD 67
Query: 727 PTKG-------LITLDGHDLKSLQVK--WLRTQIGMVGQEPILFATSILENVLMG----- 772
G ++ D ++ S +V +R +I MV Q+P F SI ENV G
Sbjct: 68 LYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRG 127
Query: 773 -KENATMKEAVA-ACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDP 830
K + ++E V A + A+ + + ++GD LSGGQ+QR+ +ARA+ DP
Sbjct: 128 VKRRSILEERVENALRNAALWDEVKD-------RLGDLAFNLSGGQQQRLCIARALATDP 180
Query: 831 RILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRL-ATVKNANTIVVLDQGSVVE 889
ILL DEPTSALD + + +++ I + T +++ H + + ++ + G ++E
Sbjct: 181 EILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIE 240
Query: 890 IG 891
G
Sbjct: 241 FG 242
|
Length = 265 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 98.9 bits (246), Expect = 7e-22
Identities = 66/240 (27%), Positives = 107/240 (44%), Gaps = 25/240 (10%)
Query: 670 SGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDP-- 727
G I + AY + +L L+L I + + LAL+G SG GK+T+ I F
Sbjct: 3 CGGIRIDHLRVAYGAN---TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAG 59
Query: 728 TKGLITLDGHDLKSLQVKWLRTQIGMVGQEPILFA-TSILENVLMGKENATMKEAVAACK 786
G I + DL + + ++ Q LF + +NV G M +A A +
Sbjct: 60 LTGRIAIADRDLTHAPPH--KRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAER 117
Query: 787 AASAHSFISELPLGYDTQVGDRGT----QLSGGQKQRIALARAMIKDPRILLLDEPTSAL 842
A A + +GD QLSGG +QRIA+ARA+ +P +LLLDEP SAL
Sbjct: 118 VADALKLV---------GLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSAL 168
Query: 843 DSESESIVQQAIDKIS---VGRTTIVIAH-RLATVKNANTIVVLDQGSVVEIGNHRQLLE 898
D+ + +++ I + T + + H + + A+ ++ G + G + L +
Sbjct: 169 DANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYD 228
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 97.1 bits (242), Expect = 8e-22
Identities = 65/234 (27%), Positives = 119/234 (50%), Gaps = 25/234 (10%)
Query: 1314 IELKMVTFTYPSRPEVT---VLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQ 1370
I+ K V++ Y S E T L D L+VK G + ++G +GSGKST+ + P++
Sbjct: 5 IKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSE 64
Query: 1371 GKVMIEGVDLREINVKW-LRKQTALVGQEP--ALFAGTIRDNIALG------NPKASWAE 1421
GKV ++G+D + W +R + +V Q P + A + +++A G P+
Sbjct: 65 GKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRER 124
Query: 1422 IEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASS 1481
++E+ ++ ++++ P LSGGQKQR+AIA + ++ DE ++
Sbjct: 125 VDESLKKVGMYEYRRHAPH-----------LLSGGQKQRVAIAGILAMRPECIIFDEPTA 173
Query: 1482 ALDLESEKHVQDALRKVSKRA--TTIVVAHRLSTIREANMIAVVRDGAVVEYGS 1533
LD + V + +++++K+ T I++ H + EA+ I V+ G VV G+
Sbjct: 174 MLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGT 227
|
Length = 280 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 96.0 bits (240), Expect = 8e-22
Identities = 67/223 (30%), Positives = 110/223 (49%), Gaps = 20/223 (8%)
Query: 687 ETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQV-K 745
+ LR ++L + + +AL+G +G GK+T+ I P G I DG D+ L +
Sbjct: 15 KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHE 74
Query: 746 WLRTQIGMVGQEPILFAT-SILENVLMGKENATMKEAVAACKAASAHSFISEL-PLGYDT 803
R I V + +F ++ EN+L+G KEA + EL P +
Sbjct: 75 RARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLE-----EVYELFPRLKER 129
Query: 804 QVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQ---AIDKISV- 859
+ R LSGG++Q +A+ARA++ P++LLLDEP+ L + IV++ AI ++
Sbjct: 130 R-NQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGL---APKIVEEIFEAIKELRKE 185
Query: 860 GRTTIVIAH---RLATVKNANTIVVLDQGSVVEIGNHRQLLER 899
G TI++ R A ++ A+ VL+ G +V G +LL
Sbjct: 186 GGMTILLVEQNARFA-LEIADRGYVLENGRIVLSGTAAELLAD 227
|
Length = 237 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 97.3 bits (242), Expect = 8e-22
Identities = 83/264 (31%), Positives = 120/264 (45%), Gaps = 35/264 (13%)
Query: 657 DPYNSEGRKLSSVSGKIEFKGVTFA-YPSRPETVILRSLNLVIPSSKTLALVGTSGGGKS 715
D Y RK S GK F+ Y E V + +N I S A++G SG GKS
Sbjct: 22 DIYLPPERKKVSGGGKPHVVAKNFSIYYGEFEAV--KKVNADILSKYVTAIIGPSGCGKS 79
Query: 716 TVFALIERFYD-----PTKGLITLDGHDL--KSLQVKWLRTQIGMVGQEPILFATSILEN 768
T I R D T G + DG D+ K LR +IGMV Q+P F SI +N
Sbjct: 80 TFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPFPKSIFDN 139
Query: 769 VLMG------KENATMKEAVAAC--KAASAHSFISELPLGYDTQVGDR----GTQLSGGQ 816
+ G + ++E V KAA +D +V DR LSGGQ
Sbjct: 140 IAYGPRLHGINDKKQLEEIVEKSLRKAAL-----------WD-EVSDRLDKNALGLSGGQ 187
Query: 817 KQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKN- 875
+QR+ +AR + +P ILLLDEPTSALD ++ + ++ I ++ T +++ H +
Sbjct: 188 QQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRV 247
Query: 876 ANTIVVLDQGSVVEIGNHRQLLER 899
++ + +G +VE QL
Sbjct: 248 SDYTMFFYEGVLVEHAPTAQLFTN 271
|
Length = 286 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 95.1 bits (237), Expect = 9e-22
Identities = 63/214 (29%), Positives = 117/214 (54%), Gaps = 20/214 (9%)
Query: 687 ETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSL---Q 743
+T +L+ ++L I + +A+VG+SG GKST+ L+ +PT G + +G L L +
Sbjct: 17 DTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNE 76
Query: 744 VKWLRTQ-IGMVGQ-EPILFATSILENVLM----GKENATMKEAVAACKAASAHSFISEL 797
LR + +G + Q +L + LENV M GK++ +KEA A+ + ++
Sbjct: 77 RAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKS--VKEA-----KERAYEMLEKV 129
Query: 798 PLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKI 857
L + ++ R ++LSGG++QR+A+ARA++ P ++L DEPT LD+ + I+ + ++
Sbjct: 130 GLEH--RINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLEL 187
Query: 858 SVGRTT--IVIAHRLATVKNANTIVVLDQGSVVE 889
+ T +V+ H L K + ++ + G +
Sbjct: 188 NRELNTSFLVVTHDLELAKKLDRVLEMKDGQLFN 221
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 95.7 bits (238), Expect = 1e-21
Identities = 62/218 (28%), Positives = 109/218 (50%), Gaps = 15/218 (6%)
Query: 1332 LKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYD-----PNQGKVMIEGVDL-REINV 1385
LK L + + AL+G SG GKST++ + R D GK+ ++G D+ I+V
Sbjct: 19 LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDV 78
Query: 1386 KWLRKQTALVGQEPALFAGTIRDNIALGNPKASW----AEIEEAAEEAYIHKFISSLPQG 1441
LR + +V Q+P F +I +N+A G +A ++E E + ++L
Sbjct: 79 ADLRIKVGMVFQKPNPFPMSIYENVAYG-LRAQGIKDKKVLDEVVERSLRG---AALWDE 134
Query: 1442 YETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKR 1501
+ ++ LSGGQ+QR+ IAR I V+L+DE +SALD + +++ + ++ K
Sbjct: 135 VKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKN 194
Query: 1502 ATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLL 1538
T ++V H + R ++ A G +VE+ + +
Sbjct: 195 YTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIF 232
|
Length = 249 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 97.6 bits (244), Expect = 1e-21
Identities = 66/252 (26%), Positives = 117/252 (46%), Gaps = 41/252 (16%)
Query: 1329 VTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRF--YDPNQ---GKVMIEGVDLREI 1383
V + ++K G ++ +VG SGSGKS + I + G+++ +G DL +
Sbjct: 18 VKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSL 77
Query: 1384 NVKWLRK----QTALVGQEPA-----LFAGTIRDNIA----LGNPKASWAEIEEAAEEAY 1430
+ K LRK + A++ Q+P + TI D IA L S E +E A E
Sbjct: 78 SEKELRKIRGKEIAMIFQDPMTSLNPVM--TIGDQIAEVLRLHGKGLSKKEAKERAIELL 135
Query: 1431 -------IHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSAL 1483
+ + S P +LSGG +QR+ IA A+ ++L+ DE ++AL
Sbjct: 136 ELVGIPDPERRLKSYP-----------HELSGGMRQRVMIAMALALNPKLLIADEPTTAL 184
Query: 1484 DLESEKHVQDALRK-VSKRATTIV-VAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLAS 1540
D+ + + D L++ ++ T ++ + H L + E A+ +AV+ G +VE G E + +
Sbjct: 185 DVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIFKN 244
Query: 1541 HLNGVYASLVRA 1552
+ L+ +
Sbjct: 245 PKHPYTRGLLNS 256
|
Length = 316 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 98.8 bits (246), Expect = 1e-21
Identities = 78/244 (31%), Positives = 119/244 (48%), Gaps = 45/244 (18%)
Query: 1311 PLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQ 1370
PL +E++ +T ++ + V D L + G + AL+G SG GKST++ ++ F P
Sbjct: 18 PL-LEIRNLTKSFDGQHAV---DDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTA 73
Query: 1371 GKVMIEGVDL-------REINVKWLRKQTALVGQEPALFAG-TIRDNIALG--NPKASWA 1420
G++M++GVDL R IN+ + Q ALF T+ NIA G K A
Sbjct: 74 GQIMLDGVDLSHVPPYQRPINMMF---------QSYALFPHMTVEQNIAFGLKQDKLPKA 124
Query: 1421 EIEEAAEE----AYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLL 1476
EI E ++ +F P QLSGGQ+QR+A+AR++ K ++LLL
Sbjct: 125 EIASRVNEMLGLVHMQEFAKRKPH-----------QLSGGQRQRVALARSLAKRPKLLLL 173
Query: 1477 DEASSALDLESEKHVQ----DALRKVSKRATTIVVAH-RLSTIREANMIAVVRDGAVVEY 1531
DE ALD + +Q D L +V T ++V H + + A IA++ G V+
Sbjct: 174 DEPMGALDKKLRDRMQLEVVDILERVG--VTCVMVTHDQEEAMTMAGRIAIMNRGKFVQI 231
Query: 1532 GSHE 1535
G E
Sbjct: 232 GEPE 235
|
Length = 377 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 98.3 bits (245), Expect = 1e-21
Identities = 81/243 (33%), Positives = 129/243 (53%), Gaps = 38/243 (15%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
+ K +T + S TVI +LNL I + L+G SG GK+TV L+ PT+G I
Sbjct: 7 VVLKNITKRFGS--NTVI-DNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQI 63
Query: 733 TLDGHDL--KSLQVKWLRTQIGMVGQEPILFA-TSILENV-----LMGKENATMKEAVAA 784
+DG D+ +S+Q + I MV Q LF S+ ENV ++G K+ V
Sbjct: 64 FIDGEDVTHRSIQQR----DICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRV-- 117
Query: 785 CKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALD- 843
K A + +L G++ + D Q+SGGQ+QR+ALARA+I P++LL DEP S LD
Sbjct: 118 -KEALE---LVDLA-GFEDRYVD---QISGGQQQRVALARALILKPKVLLFDEPLSNLDA 169
Query: 844 ----SESESI--VQQAIDKISVGRTTIVIAH-RLATVKNANTIVVLDQGSVVEIGNHRQL 896
S E I +QQ T++ + H + ++T++V+++G +++IG+ ++L
Sbjct: 170 NLRRSMREKIRELQQ-----QFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQEL 224
Query: 897 LER 899
+
Sbjct: 225 YRQ 227
|
Length = 351 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 2e-21
Identities = 73/246 (29%), Positives = 121/246 (49%), Gaps = 25/246 (10%)
Query: 1304 RKLERSKPL-----GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTV 1358
R L ++ PL I +K F++ S+ L D L++ GS+VA+VGG+G GK+++
Sbjct: 600 RILAQNPPLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSL 659
Query: 1359 IWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGN---P 1415
I M+ + E + +R A V Q +F T+R+NI G+
Sbjct: 660 I------------SAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDFES 707
Query: 1416 KASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLL 1475
+ W I+ A + + LP T++GE GV +SGGQKQR+++ARA+ S + +
Sbjct: 708 ERYWRAIDVTA----LQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYI 763
Query: 1476 LDEASSALDLESEKHVQDALRKVSKRATT-IVVAHRLSTIREANMIAVVRDGAVVEYGSH 1534
D+ SALD V D+ K + T ++V ++L + + I +V +G + E G+
Sbjct: 764 FDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTF 823
Query: 1535 ETLLAS 1540
L S
Sbjct: 824 AELSKS 829
|
Length = 1495 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 2e-21
Identities = 63/210 (30%), Positives = 113/210 (53%), Gaps = 19/210 (9%)
Query: 1331 VLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRK 1390
VLK+ K++ G ++A+ G +GSGKS+++ +I +P++GK+ G
Sbjct: 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG------------- 487
Query: 1391 QTALVGQEPALFAGTIRDNIALGNPKASWAEIE--EAAEEAYIHKFISSLPQGYETQVGE 1448
+ + Q + GTI+DNI G S+ E + + + I+ P+ +T +GE
Sbjct: 488 RISFSPQTSWIMPGTIKDNIIFG---LSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGE 544
Query: 1449 SGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHV-QDALRKVSKRATTIVV 1507
G+ LSGGQ+ RI++ARA+ K + + LLD + LD+ +EK + + L K+ T I+V
Sbjct: 545 GGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILV 604
Query: 1508 AHRLSTIREANMIAVVRDGAVVEYGSHETL 1537
+L +++A+ I ++ +G YG+ L
Sbjct: 605 TSKLEHLKKADKILLLHEGVCYFYGTFSEL 634
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 95.5 bits (237), Expect = 2e-21
Identities = 63/223 (28%), Positives = 114/223 (51%), Gaps = 16/223 (7%)
Query: 687 ETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGH------DLK 740
+ IL+ + + IP++ ++G SG GKST+ ++ R + I +DG D+
Sbjct: 22 DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIF 81
Query: 741 SLQVKWLRTQIGMVGQEPILFA-TSILENVLMGKENATMKEAVAACKAASAHSFISELPL 799
+ LR ++GMV Q+P F SI +N+ ++ +KE K +
Sbjct: 82 QIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEE----CLRKV 137
Query: 800 GYDTQVGDR----GTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAID 855
G +V DR +QLSGGQ+QR+ +ARA+ P++LL+DEPTS +D + +++ I
Sbjct: 138 GLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLIT 197
Query: 856 KISVGRTTIVIAHRLATV-KNANTIVVLDQGSVVEIGNHRQLL 897
++ ++++H V + A+ + L G +VE G+ ++
Sbjct: 198 ELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIF 240
|
Length = 257 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 95.1 bits (236), Expect = 2e-21
Identities = 73/248 (29%), Positives = 122/248 (49%), Gaps = 34/248 (13%)
Query: 1325 SRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYD--PN---QGKVMIEGVD 1379
S L L + + AL+G SG GKST + + R D N G++ EG +
Sbjct: 13 SYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQN 72
Query: 1380 L--REINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKASWAE-------IEEAAEEAY 1430
+ ++++ LRK+ +V Q+P F ++ DN+A G A + +EE+ ++A
Sbjct: 73 IYGSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAA 132
Query: 1431 IHKFISSLPQGYETQ--VGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESE 1488
I K ET+ + + SGGQ+QRI IARA+ +V+LLDE +SALD S
Sbjct: 133 IWK---------ETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISS 183
Query: 1489 KHVQDALRKVSKRATTIVVAHRLSTI-REANMIAVVRDGAVVEYGSHETLL--------A 1539
+++ L ++ + T I+V H L R ++ A + +G ++E G E + +
Sbjct: 184 SEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMFIAPKKQITS 243
Query: 1540 SHLNGVYA 1547
+LNG +
Sbjct: 244 DYLNGRFG 251
|
Length = 251 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 93.7 bits (234), Expect = 3e-21
Identities = 62/230 (26%), Positives = 105/230 (45%), Gaps = 25/230 (10%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
++++ +T TY + D L V G + L+G +G+GK+T + ++ P G
Sbjct: 1 LQIRNLTKTYKKGT-KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTA 59
Query: 1374 MIEGVDLREINVKWLRKQTALVGQEPALFAG-TIRDNIAL-----GNPKASWAEIEEAAE 1427
I G +R + K R+ Q ALF T+R+++ G PK +
Sbjct: 60 YINGYSIRT-DRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPK----SEIKEEV 114
Query: 1428 EAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLES 1487
E + L + LSGG K+++++A A++ G VLLLDE +S LD S
Sbjct: 115 ELLLRVL--GLTDKANKRAR----TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPAS 168
Query: 1488 EKHVQDALRKVSKRATTIVVAHRLSTIREANM----IAVVRDGAVVEYGS 1533
+ + D + +V K + I+ H ++ EA IA++ DG + GS
Sbjct: 169 RRAIWDLILEVRKGRSIILTTH---SMDEAEALCDRIAIMSDGKLRCIGS 215
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 3e-21
Identities = 69/241 (28%), Positives = 120/241 (49%), Gaps = 20/241 (8%)
Query: 1317 KMVTFT-YPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMI 1375
KM T + P+V +L+D + V G + ++G +GSGKST++ + ++ ++G+V
Sbjct: 661 KMKTDDFFELEPKV-LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRV-- 717
Query: 1376 EGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHKFI 1435
W + A V Q+ + T+R NI + + + A + +A + + +
Sbjct: 718 -----------WAERSIAYVPQQAWIMNATVRGNILFFDEEDA-ARLADAVRVSQLEADL 765
Query: 1436 SSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLE-SEKHVQDA 1494
+ L G ET++GE GV LSGGQK R+++ARA+ V LLD+ SALD E+ V++
Sbjct: 766 AQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEEC 825
Query: 1495 LRKVSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETLLASHLNGVYASLVRAET 1554
T ++ H++ + A+ + + DG V GS + + L YA+L
Sbjct: 826 FLGALAGKTRVLATHQVHVVPRADYVVALGDGRVEFSGSSADFMRTSL---YATLAAELK 882
Query: 1555 E 1555
E
Sbjct: 883 E 883
|
Length = 1560 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 95.1 bits (237), Expect = 3e-21
Identities = 72/233 (30%), Positives = 118/233 (50%), Gaps = 29/233 (12%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
+E + + ++YP T L+ +N + +AL+G +G GKST+F PT G +
Sbjct: 2 LETRDLKYSYPD--GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEV 59
Query: 733 TLDG----HDLKSLQVKWLRTQIGMVGQEP--ILFATSILENVLMGKENATM-KEAVA-- 783
+ G +D KSL ++ +R +G+V Q P LFA ++ E+V G N + KE V
Sbjct: 60 LIKGEPIKYDKKSL-LE-VRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKR 117
Query: 784 ---ACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTS 840
A KA F ++ P LSGGQK+R+A+A + P I++LDEPTS
Sbjct: 118 VKEALKAVGMEGFENKPP-----------HHLSGGQKKRVAIAGILAMKPEIIVLDEPTS 166
Query: 841 ALDSESESIVQQAIDKISVGRTTIVIA-HRLATV-KNANTIVVLDQGSVVEIG 891
LD S + + + ++ TI+I+ H + V A+ + V+ G +++ G
Sbjct: 167 GLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEG 219
|
Length = 275 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 94.0 bits (234), Expect = 3e-21
Identities = 66/215 (30%), Positives = 99/215 (46%), Gaps = 28/215 (13%)
Query: 690 ILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSL---QVKW 746
IL+ + LV+ +T+A+VG SG GKST+ A++ DP+ G + L G L L
Sbjct: 25 ILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAA 84
Query: 747 LRTQ-IGMVGQEPILFAT-SILENV-----LMGKENATMKEAVAACKAASAHSFISELPL 799
LR + +G V Q L + LENV L G+ +A + A A +
Sbjct: 85 LRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEA----------V 134
Query: 800 GYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKI-- 857
G ++ QLSGG++QR+ALARA P +L DEPT LD + + D +
Sbjct: 135 GLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATG---DKIADLLFA 191
Query: 858 ---SVGRTTIVIAHRLATVKNANTIVVLDQGSVVE 889
G T +++ H + + L G +VE
Sbjct: 192 LNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVE 226
|
Length = 228 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 94.0 bits (234), Expect = 4e-21
Identities = 63/230 (27%), Positives = 122/230 (53%), Gaps = 12/230 (5%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
IE K V+ + VL + L + G +V ++G SGSGKST++ I + + G +
Sbjct: 2 IEFKNVSKHFG---PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDL 58
Query: 1374 MIEGVDLR--EINVKWLRKQTALVGQEPALFAG-TIRDNIALGNPKASWAEIEEAAEEAY 1430
+++G+ + +++ + +R++ +V Q+ LF T +N+ G + A EEA ++A
Sbjct: 59 IVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQA- 117
Query: 1431 IHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKH 1490
+ ++ + G + +LSGGQ+QR+AIARA+ +++L DE +SALD E
Sbjct: 118 -RELLAKV--GLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHE 174
Query: 1491 VQDALRKVSKRA-TTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLL 1538
V ++ +++ T ++V H + + A+ + + G + E G + L+
Sbjct: 175 VLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLI 224
|
Length = 240 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 94.4 bits (235), Expect = 4e-21
Identities = 64/220 (29%), Positives = 117/220 (53%), Gaps = 19/220 (8%)
Query: 677 GVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDG 736
++ +Y +P + L ++L I S + + ++G SG GK+T+ LI F P++G I L+G
Sbjct: 8 HLSLSYEGKPRS-ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNG 66
Query: 737 HDLKSLQVKWLRTQIGMVGQEPILFA-TSILENVLMGKENATMKEAVAACKAASAHSFIS 795
++ + G+V Q L ++++NV G + +++A + AH ++
Sbjct: 67 RRIEGPG-----AERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQ---RREIAHQMLA 118
Query: 796 ELPL-GYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAI 854
+ L G + + QLSGG +QR+ +ARA+ +P++LLLDEP ALD+ + +Q+ +
Sbjct: 119 LVGLEGAEHK---YIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELL 175
Query: 855 DKI--SVGRTTIVIAHRL-ATVKNANTIVVLD--QGSVVE 889
+ G+ ++I H + + A +VVL G VVE
Sbjct: 176 LDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVE 215
|
Length = 259 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 94.0 bits (234), Expect = 4e-21
Identities = 72/228 (31%), Positives = 115/228 (50%), Gaps = 27/228 (11%)
Query: 1330 TVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDL---REIN-- 1384
TVL L+VK G +VA++G SGSGK+T++ I P G + + + + R ++
Sbjct: 17 TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQ 76
Query: 1385 ---VKWLRKQTALVGQEPALFAG-TIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQ 1440
++ LR+ V Q LF T+ +NI G P E +E A +
Sbjct: 77 KGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEG-PVIVKGEPKEEATA---------RAR 126
Query: 1441 GYETQVGESGVQ------LSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDA 1494
+VG +G + LSGGQ+QR+AIARA+ V+L DE +SALD E V +
Sbjct: 127 ELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNT 186
Query: 1495 LRKVSK-RATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLAS 1540
+R++++ + T ++V H +S R+ A+ + G +VE G + L A
Sbjct: 187 IRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFAD 234
|
Length = 250 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 94.4 bits (235), Expect = 4e-21
Identities = 75/243 (30%), Positives = 126/243 (51%), Gaps = 26/243 (10%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYD--PN-- 1369
I++K + Y S V +D L ++ S+ A +G SG GKSTV+ + R ++ P
Sbjct: 5 IDVKDLNIYYGSFHAV---EDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGAR 61
Query: 1370 -QGKVMIEGVDLREINVK--WLRKQTALVGQEPALF-AGTIRDNIALG---NPKASWAEI 1422
+G+V+++G DL V +R+ +V Q P F +IRDN+ G N + ++
Sbjct: 62 VEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDL 121
Query: 1423 EEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSA 1482
+E E++ ++L + ++ + G LSGGQ+QR+ IARAI VLL+DE SA
Sbjct: 122 DELVEKSLRG---ANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSA 178
Query: 1483 LDLESEKHVQDALRKVSKRATTIVVAH------RLSTIREA--NMIAVVRDGAVVEYGSH 1534
LD S ++D + ++ + T ++V H R+S + A N+ A + G +VE
Sbjct: 179 LDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSD-QTAFFNLEATGKPGRLVEIDDT 237
Query: 1535 ETL 1537
E +
Sbjct: 238 EKI 240
|
Length = 258 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 94.5 bits (235), Expect = 5e-21
Identities = 65/213 (30%), Positives = 110/213 (51%), Gaps = 19/213 (8%)
Query: 677 GVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDG 736
+ F+ +L+++NL I + LA+ G++G GK+++ LI +P++G I G
Sbjct: 39 NLFFSNLCLVGAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG 98
Query: 737 HDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMG--KENATMKEAVAACKAASAHSFI 794
S Q W+ M G +I EN++ G + K V AC+ I
Sbjct: 99 RISFSSQFSWI-----MPG--------TIKENIIFGVSYDEYRYKSVVKACQLEED---I 142
Query: 795 SELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESE-SIVQQA 853
++ P +T +G+ G LSGGQ+ RI+LARA+ KD + LLD P LD +E I +
Sbjct: 143 TKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESC 202
Query: 854 IDKISVGRTTIVIAHRLATVKNANTIVVLDQGS 886
+ K+ +T I++ ++ +K A+ I++L +GS
Sbjct: 203 VCKLMANKTRILVTSKMEHLKKADKILILHEGS 235
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 93.2 bits (232), Expect = 5e-21
Identities = 52/187 (27%), Positives = 94/187 (50%), Gaps = 14/187 (7%)
Query: 1309 SKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDP 1368
+ PL ++L+ V + +L + ++ G + G SG GKST++ ++ P
Sbjct: 4 NSPL-LQLQNVGYLAGDAK---ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISP 59
Query: 1369 NQGKVMIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEE 1428
G ++ EG D+ + + R+Q + Q P LF T+ DN+ W + +
Sbjct: 60 TSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIF-----PWQIRNQQPDP 114
Query: 1429 AYIHKFIS--SLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLE 1486
A + +LP +T + ++ +LSGG+KQRI++ R + +VLLLDE +SALD
Sbjct: 115 AIFLDDLERFALP---DTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDES 171
Query: 1487 SEKHVQD 1493
++ +V +
Sbjct: 172 NKHNVNE 178
|
Length = 225 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 93.8 bits (233), Expect = 6e-21
Identities = 64/226 (28%), Positives = 117/226 (51%), Gaps = 24/226 (10%)
Query: 690 ILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYD-----PTKGLITLDGHDLKSLQV 744
+++ ++L IP + AL+G SG GKST+ R + +G + L G ++ S V
Sbjct: 19 VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDV 78
Query: 745 KWL--RTQIGMVGQEPILFA-TSILENVLMG-------KENATMKEAVA-ACKAASAHSF 793
+ R ++GMV Q P F +I +NV +G K + E V A K A+
Sbjct: 79 DPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDE 138
Query: 794 ISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQA 853
+ + ++ D + LSGGQ+QR+ +ARA+ P+ILL+DEPT+ +D + +++
Sbjct: 139 VKD-------RLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEEL 191
Query: 854 IDKISVGRTTIVIAHRLA-TVKNANTIVVLDQGSVVEIGNHRQLLE 898
+ ++ T +++ H A + ++ + L G ++E+G R++ E
Sbjct: 192 LFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVFE 237
|
Length = 253 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 93.5 bits (232), Expect = 6e-21
Identities = 70/223 (31%), Positives = 118/223 (52%), Gaps = 23/223 (10%)
Query: 691 LRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYD--PT---KGLITLDGHDL--KSLQ 743
++ +++ P + A++G SG GKSTV I R +D P+ G I LD D+ + +
Sbjct: 20 VKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79
Query: 744 VKWLRTQIGMVGQEPILF-ATSILENVLMG-KENATMKEAVAACKAASAHSFISELPLGY 801
+R ++GMV Q+P F A SI +NV+ G K N + + A S + + L +
Sbjct: 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEAD---EIVESSLKRVAL-W 135
Query: 802 DTQVGDR----GTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKI 857
D +V DR +LSGGQ+QR+ +AR + P ++L+DEP SALD S +++ I+++
Sbjct: 136 D-EVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEEL 194
Query: 858 SVGRTTIVIAHRL---ATVKNANTIVVLDQGSVVEIGNHRQLL 897
T I++ H + A V + + G +VE G +++
Sbjct: 195 KEKYTIIIVTHNMQQAARVSDYTAFFYM--GDLVECGETKKIF 235
|
Length = 252 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 93.0 bits (232), Expect = 6e-21
Identities = 65/216 (30%), Positives = 107/216 (49%), Gaps = 24/216 (11%)
Query: 687 ETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKW 746
++ ILR ++L +P + ++G +G GK+T+ + G I LDG D+ L
Sbjct: 12 QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHE 71
Query: 747 L-RTQIGMVGQEPILFAT-SILENVLMGKENATMKEAVAACKAASAH--SFISEL-PLGY 801
R I V Q +F ++ EN+L G +AA S I EL P+
Sbjct: 72 RARAGIAYVPQGREIFPRLTVEENLLTG---------LAALPRRSRKIPDEIYELFPVLK 122
Query: 802 DTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQ---QAIDKI- 857
+ G RG LSGGQ+Q++A+ARA++ P++LLLDEPT + SI++ + I ++
Sbjct: 123 EML-GRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQP---SIIKDIGRVIRRLR 178
Query: 858 -SVGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIG 891
G +++ L + A+ V+++G VV G
Sbjct: 179 AEGGMAILLVEQYLDFARELADRYYVMERGRVVASG 214
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 92.8 bits (230), Expect = 1e-20
Identities = 65/221 (29%), Positives = 120/221 (54%), Gaps = 15/221 (6%)
Query: 1332 LKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYD--PN---QGKVMIEGVDL--REIN 1384
+KD + S+ A++G SG GKSTV+ I R +D P+ GK++++ D+ R ++
Sbjct: 20 VKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79
Query: 1385 VKWLRKQTALVGQEPALF-AGTIRDNIALG---NPKASWAEIEEAAEEAYIHKFISSLPQ 1440
+R++ +V Q+P F A +I DN+ G N + + +E +E E + +L
Sbjct: 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKR---VALWD 136
Query: 1441 GYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSK 1500
+ ++ + ++LSGGQ+QR+ IAR I V+L+DE +SALD S +++ + ++ +
Sbjct: 137 EVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE 196
Query: 1501 RATTIVVAHRL-STIREANMIAVVRDGAVVEYGSHETLLAS 1540
+ T I+V H + R ++ A G +VE G + + +
Sbjct: 197 KYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKIFTT 237
|
Length = 252 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 93.4 bits (232), Expect = 1e-20
Identities = 65/197 (32%), Positives = 103/197 (52%), Gaps = 19/197 (9%)
Query: 687 ETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYD-----PTKGLITLDGHDL-- 739
E L+++NL I ++ A++G SG GKST + R + T G I ++
Sbjct: 36 EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFD 95
Query: 740 KSLQVKWLRTQIGMVGQEPILFATSILENVLMG------KENATMKEAVAACKAASAHSF 793
KS V+ LRT +GMV Q+P F SI +NV G K+ T+ E V K+ +
Sbjct: 96 KSYSVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVE--KSLRGAAI 153
Query: 794 ISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQA 853
EL ++ D LSGGQ+QR+ +AR + +P ++L+DEPTSALD S V++
Sbjct: 154 WDEL----KDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEEL 209
Query: 854 IDKISVGRTTIVIAHRL 870
+ ++ + I++ H +
Sbjct: 210 VQELKKDYSIIIVTHNM 226
|
Length = 271 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 92.0 bits (229), Expect = 1e-20
Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 8/165 (4%)
Query: 690 ILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSL---QVKW 746
+L +NL I + + L G SG GK+T+ LI +G + + G +L ++
Sbjct: 20 VLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQ 79
Query: 747 LRTQIGMVGQEPILF-ATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQV 805
LR IG + Q L + +NV M E A A + + + LG +
Sbjct: 80 LRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEAR--ERARAMLEAVGLG--DHL 135
Query: 806 GDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIV 850
LSGGQKQR+A+ARA++ P+++L DEPT+ALDS+S V
Sbjct: 136 DYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDV 180
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 91.4 bits (228), Expect = 1e-20
Identities = 56/208 (26%), Positives = 93/208 (44%), Gaps = 41/208 (19%)
Query: 690 ILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERF--YDPTKGLITLDGHDLKSLQV-KW 746
IL+ +NL I + AL+G +G GKST+ I Y+ T+G I G D+ L +
Sbjct: 15 ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEER 74
Query: 747 LRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVG 806
R I + Q P G +NA F+ + G
Sbjct: 75 ARLGIFLAFQYPPEIP---------GVKNAD---------------FLRYVNEG------ 104
Query: 807 DRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKI-SVGRTTIV 865
SGG+K+R + + ++ +P + +LDEP S LD ++ +V + I+K+ G++ ++
Sbjct: 105 -----FSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLI 159
Query: 866 IAH--RLATVKNANTIVVLDQGSVVEIG 891
I H RL + + VL G +V+ G
Sbjct: 160 ITHYQRLLDYIKPDRVHVLYDGRIVKSG 187
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 93.8 bits (233), Expect = 1e-20
Identities = 67/238 (28%), Positives = 118/238 (49%), Gaps = 26/238 (10%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
++ + + + Y L+ +N+ I + A++G +G GKST+F + P+ G I
Sbjct: 6 LKVEELNYNYSDGTHA--LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRI 63
Query: 733 TLDGH--DLKSLQVKWLRTQIGMVGQEP--ILFATSILENVLMGKENATM--KEAVAACK 786
DG D + LR +GMV Q+P LF+ S+ ++V G N + E
Sbjct: 64 LFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVD 123
Query: 787 AASAHSFISELPLGYDTQVGDRGTQ-LSGGQKQRIALARAMIKDPRILLLDEPTSALD-- 843
A + I L D+ T LS GQK+R+A+A ++ +P++L+LDEPT+ LD
Sbjct: 124 NALKRTGIEHLK--------DKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPM 175
Query: 844 --SESESIVQQAIDKISVGRTTIVIA-HRLATVK-NANTIVVLDQGSVVEIGNHRQLL 897
SE ++ + ++ + TI+IA H + V + + V+ +G V+ GN +++
Sbjct: 176 GVSEIMKLLVEMQKELGL---TIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVF 230
|
Length = 283 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 91.8 bits (228), Expect = 1e-20
Identities = 61/221 (27%), Positives = 97/221 (43%), Gaps = 32/221 (14%)
Query: 686 PETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPT---KGLITLDGHDLKSL 742
P + +L ++N I + + L+G SG GKST+ + + G + L+ L L
Sbjct: 13 PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDML 72
Query: 743 QVKWLRTQIGMVGQEPILFAT-SILENVLMG-----KENATMKEAVAACKAASAHSFISE 796
+ QIG++ Q+ +LF S+ +N+L K NA A AA + + +
Sbjct: 73 PAA--QRQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQ 130
Query: 797 LPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAI-- 854
P LSGGQ+ R+AL RA++ P+ LLLDEP S LD +Q +
Sbjct: 131 DP-----------ATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFS 179
Query: 855 DKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQ 895
+ + G T+ + H L V V+E+ Q
Sbjct: 180 EVRAAGIPTVQVTHDLQDVPAG--------SRVIEMAQWEQ 212
|
Length = 213 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 92.0 bits (229), Expect = 2e-20
Identities = 65/237 (27%), Positives = 110/237 (46%), Gaps = 22/237 (9%)
Query: 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGK 1372
+E+ ++F Y +R L D V+ G VAL+G +G+GKST+ L+ R Y +G+
Sbjct: 1 ALEVAGLSFRYGAR---RALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQ 57
Query: 1373 VMIEGVDLREINVKWLRKQTALVGQEPAL-FAGTIRDNI----AL-GNPKASWAEIEEAA 1426
+ + G DLR L + +V Q+P L ++R N+ AL G +A E
Sbjct: 58 ISVAGHDLRRAPRAALA-RLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRA---EARARI 113
Query: 1427 EEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLE 1486
E G + + +L+GG ++R+ IARA+L +LLLDE + LD
Sbjct: 114 AEL-------LARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPA 166
Query: 1487 SEKHVQDALRKVSKRATTIVV--AHRLSTIREANMIAVVRDGAVVEYGSHETLLASH 1541
S + +R +++ V+ H + I + + V+ G V+ G+ L +
Sbjct: 167 SRAAITAHVRALARDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGAT 223
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 91.6 bits (227), Expect = 2e-20
Identities = 63/209 (30%), Positives = 103/209 (49%), Gaps = 10/209 (4%)
Query: 686 PETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI----TLDGHDLKS 741
L ++N+ IP+ + +VG G GKS++ I +G + +
Sbjct: 12 SGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFE 71
Query: 742 LQVKWLRTQIGMVGQEPILFATSILENVLMGKE-NATMKEAVAACKAASAHSFISELPLG 800
R + Q+P L ++ EN+ G N +AV A S I LP G
Sbjct: 72 ATRSRNRYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVT--DACSLQPDIDLLPFG 129
Query: 801 YDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSE-SESIVQQAIDKI-- 857
T++G+RG LSGGQ+QRI +ARA+ ++ I+ LD+P SALD S+ ++Q+ I K
Sbjct: 130 DQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQ 189
Query: 858 SVGRTTIVIAHRLATVKNANTIVVLDQGS 886
RT +++ H+L + +A+ I+ + GS
Sbjct: 190 DDKRTLVLVTHKLQYLPHADWIIAMKDGS 218
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 92.8 bits (230), Expect = 2e-20
Identities = 68/250 (27%), Positives = 128/250 (51%), Gaps = 32/250 (12%)
Query: 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGK 1372
I++ ++F Y ++ +L+ +++ + A++G SG GKST + + R + + +
Sbjct: 7 AIKVNNLSFYYDTQ---KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNEL-ESE 62
Query: 1373 VMIEG--------VDLREINVKWLRKQTALVGQEPALFAGTIRDNIALG------NPKAS 1418
V +EG + R +N+ LR+Q ++V +P LF ++ DN+A G PK
Sbjct: 63 VRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLE 122
Query: 1419 WAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDE 1478
+I E+A + + L + ++ +S + LSGGQ+QR+ IARA+ +VLL+DE
Sbjct: 123 IDDIVESALKD------ADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDE 176
Query: 1479 ASSALDLESEKHVQDALRKVSKRA--TTIVVAHRLSTI-REANMIAVV-----RDGAVVE 1530
LD + V+ ++ + R+ T ++V+H L + R ++ A R G +VE
Sbjct: 177 PCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVE 236
Query: 1531 YGSHETLLAS 1540
+G + + S
Sbjct: 237 FGLTKKIFNS 246
|
Length = 261 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 92.7 bits (230), Expect = 2e-20
Identities = 66/233 (28%), Positives = 122/233 (52%), Gaps = 31/233 (13%)
Query: 687 ETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSL---- 742
E +L+ ++L + ++++G+SG GKST I P++G I ++G + +
Sbjct: 17 EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKD 76
Query: 743 ---------QVKWLRTQIGMVGQEPILFA-TSILENVL------MGKENATMKEAVAACK 786
Q++ LRT++ MV Q L++ ++LENV+ +G +E
Sbjct: 77 GQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARE------ 130
Query: 787 AASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSES 846
A +++++ + Q G LSGGQ+QR+++ARA+ +P +LL DEPTSALD E
Sbjct: 131 --RAVKYLAKVGIDERAQ-GKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPEL 187
Query: 847 ESIVQQAIDKIS-VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLL 897
V + + +++ G+T +V+ H + ++ ++ ++ L QG + E G QL
Sbjct: 188 VGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLF 240
|
Length = 257 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 92.1 bits (230), Expect = 2e-20
Identities = 62/223 (27%), Positives = 96/223 (43%), Gaps = 40/223 (17%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
+E + ++ R +L ++L + + +A++G +G GKST+ + P G +
Sbjct: 3 LEARNLSVRLGGRT---LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEV 59
Query: 733 TLDGHDLKSLQVKWLRTQIGMVGQEPIL-FATSILENVLMGK-----ENATMKEAVAACK 786
L+G L L + ++ Q L F ++ E V MG+ A VAA
Sbjct: 60 RLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAAL 119
Query: 787 AASAHSFISELPLGYDTQVGDRG-TQLSGGQKQRIALARAMI------KDPRILLLDEPT 839
A ++ L R QLSGG++QR+ LAR + PR LLLDEPT
Sbjct: 120 AQVD---LAHL--------AGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPT 168
Query: 840 SALDSESESIVQQAIDKISVGRTTIVIAHRLATVKNANTIVVL 882
SALD + Q + +A +LA + IVVL
Sbjct: 169 SALD-----LAHQ--------HHVLRLARQLAHERGLAVIVVL 198
|
Length = 258 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 91.3 bits (227), Expect = 2e-20
Identities = 69/237 (29%), Positives = 112/237 (47%), Gaps = 30/237 (12%)
Query: 1334 DFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPN----QGKVMIEGVDLREINVKWLR 1389
D L +K G ++ALVG SGSGKS I P G+++++G L ++++
Sbjct: 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIR--G 61
Query: 1390 KQTALVGQEP-----ALFAGTIRDNI-----ALGNP-KASWAEIEEAAEEAYIHKFISSL 1438
+ A + Q P LF T+ ++ +LG K + A I EA E L
Sbjct: 62 RHIATIMQNPRTAFNPLF--TMGNHAIETLRSLGKLSKQARALILEALEAV-------GL 112
Query: 1439 PQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRK- 1497
P E + + QLSGG QR+ IA A+L L+ DE ++ LD+ ++ V LR+
Sbjct: 113 PDP-EEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLREL 171
Query: 1498 VSKRATTIV-VAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLASHLNGVYASLVRA 1552
T I+ + H L + A+ +AV+ DG +VE G+ + + + + L+ A
Sbjct: 172 RQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETTRKLLSA 228
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 92.1 bits (229), Expect = 3e-20
Identities = 67/196 (34%), Positives = 96/196 (48%), Gaps = 29/196 (14%)
Query: 691 LRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDP-----TKGLITLDGHDL--KSLQ 743
++ +++ +K AL+G SG GKST + R D G I G D+ K +
Sbjct: 36 IKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN 95
Query: 744 VKWLRTQIGMVGQEPILFATSILENVLMGKENATMK------EAV-AACKAASAHSFISE 796
V +R IGMV Q P FA SI EN+ E A +K E V + K A+
Sbjct: 96 VYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAAL------ 149
Query: 797 LPLGYDTQVGDR----GTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQ 852
+D QV D LSGGQ+QR+ +ARA+ P ILL+DEP SALD S +++
Sbjct: 150 ----WD-QVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEE 204
Query: 853 AIDKISVGRTTIVIAH 868
+ ++ T I++ H
Sbjct: 205 TMFELKKNYTIIIVTH 220
|
Length = 267 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 91.4 bits (227), Expect = 3e-20
Identities = 62/214 (28%), Positives = 105/214 (49%), Gaps = 16/214 (7%)
Query: 1332 LKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPN-----QGKVMIEGVDL---REI 1383
L L + AL+G SGSGKST++ I R D N G ++ G ++ R
Sbjct: 21 LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTD 80
Query: 1384 NVKWLRKQTALVGQEPALFAGTIRDNIALG---NPKASWAEIEEAAEEAYIHKFISSLPQ 1440
V LRK+ +V Q+P F +I +N+ G ++EA E++ +S+
Sbjct: 81 TVD-LRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKG---ASIWD 136
Query: 1441 GYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSK 1500
+ ++ +S + LSGGQ+QR+ IAR + +++LLDE +SALD S +++ L +
Sbjct: 137 EVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD 196
Query: 1501 RATTIVVAHRLSTI-REANMIAVVRDGAVVEYGS 1533
T ++V + R ++ DG ++EY
Sbjct: 197 DYTMLLVTRSMQQASRISDRTGFFLDGDLIEYND 230
|
Length = 252 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 98.3 bits (245), Expect = 3e-20
Identities = 67/247 (27%), Positives = 120/247 (48%), Gaps = 35/247 (14%)
Query: 689 VILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLR 748
V+LR +++ +P K ++G +G GKST+ + ++ ++G + W
Sbjct: 674 VLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRV-------------WAE 720
Query: 749 TQIGMVGQEPILFATSILENVLMGKEN--ATMKEAVAACKAASAHSFISELPLGYDTQVG 806
I V Q+ + ++ N+L E A + +AV + + +++L G +T++G
Sbjct: 721 RSIAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEAD---LAQLGGGLETEIG 777
Query: 807 DRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSE-SESIVQQAIDKISVGRTTIV 865
++G LSGGQK R++LARA+ + + LLD+P SALD+ E +V++ G+T ++
Sbjct: 778 EKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVL 837
Query: 866 IAHRLATVKNANTIVVLDQGSVVEIGNHRQLLERGGAYHDLV------KLASEAVSQPQS 919
H++ V A+ +V L G V E G+ D + LA+E S
Sbjct: 838 ATHQVHVVPRADYVVALGDGRV----------EFSGSSADFMRTSLYATLAAELKENKDS 887
Query: 920 KQKDAKR 926
K+ DA
Sbjct: 888 KEGDADA 894
|
Length = 1560 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 90.6 bits (226), Expect = 3e-20
Identities = 63/220 (28%), Positives = 102/220 (46%), Gaps = 18/220 (8%)
Query: 1328 EVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLR-----E 1382
+ +L L V G +VAL+G +G+GK+T++ I P G + +G D+ E
Sbjct: 12 KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHE 71
Query: 1383 INVKWLRKQTALVGQEPALFAG-TIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQG 1441
R V + +F T+ +N+ LG A+ + E Y F L +
Sbjct: 72 RA----RAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVY-ELF-PRLKER 125
Query: 1442 YETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKR 1501
+ G LSGG++Q +AIARA++ ++LLLDE S L + + + +A+R++
Sbjct: 126 RKQLAG----TLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDE 181
Query: 1502 ATTIV-VAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLA 1539
TI+ V E A+ V+ G VV G+ LLA
Sbjct: 182 GVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 91.6 bits (228), Expect = 3e-20
Identities = 60/229 (26%), Positives = 104/229 (45%), Gaps = 21/229 (9%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
IE K V+ + IL L+ + + A+VG +G GK+T+ +L+ + P+ G +
Sbjct: 32 IELKNVSVRRNGKK---ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDV 88
Query: 733 TLDGHDLKSLQVKW-LRTQIGMVG---QEPILFATSILENVLMGKENATM--KEAVAACK 786
TL G + + LR +IG+V E ++ + VL G + +E + A
Sbjct: 89 TLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAED 148
Query: 787 AASAHSFISELPLGYDTQVGDRG-TQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSE 845
A+A L L + DR LS G+++R+ +ARA++KDP +L+LDEP LD
Sbjct: 149 LAAAQWL---LELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLI 205
Query: 846 S-----ESIVQQAIDKISVGRTTIVIAHRLATV-KNANTIVVLDQGSVV 888
+ + + A + + H + ++L +G VV
Sbjct: 206 AREQLLNRLEELAASP--GAPALLFVTHHAEEIPPCFTHRLLLKEGEVV 252
|
Length = 257 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 91.4 bits (227), Expect = 4e-20
Identities = 58/218 (26%), Positives = 108/218 (49%), Gaps = 16/218 (7%)
Query: 1332 LKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYD--PN---QGKVMIEGVDLREI--N 1384
L D + + + AL+G SG GKST++ R D P G ++ G ++ + +
Sbjct: 22 LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGAD 81
Query: 1385 VKWLRKQTALVGQEPALFAGTIRDNIALGNPKA----SWAEIEEAAEEAYIHKFISSLPQ 1440
V LR++ +V Q P F +I +N+A G P+ + ++ E++ ++L
Sbjct: 82 VVALRRKIGMVFQRPNPFPKSIYENVAYG-PRIHGEKNKKTLDTIVEKSLKG---AALWD 137
Query: 1441 GYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSK 1500
+ ++ +S + LSGGQ+QR+ IAR + V+L+DE SALD + ++D + + K
Sbjct: 138 EVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK 197
Query: 1501 RATTIVVAHRLS-TIREANMIAVVRDGAVVEYGSHETL 1537
T I+V H + R ++ + G ++E+ +
Sbjct: 198 EYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQI 235
|
Length = 253 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 91.3 bits (226), Expect = 4e-20
Identities = 67/231 (29%), Positives = 123/231 (53%), Gaps = 19/231 (8%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYD-----P 1368
I+++ V F Y VLK+ + + A++G SG GKST++ + R D
Sbjct: 5 IKIRGVNFFYHKH---QVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGAR 61
Query: 1369 NQGKVMI--EGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPK----ASWAEI 1422
+G V++ E + ++V LRK+ +V Q+P F +I DN+A G P+ + + +
Sbjct: 62 LEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFG-PRMLGTTAQSRL 120
Query: 1423 EEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSA 1482
+E E++ + + ++L + + +SG+ LSGGQ+QR+ IAR + V+L+DE SA
Sbjct: 121 DEVVEKS-LRQ--AALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSA 177
Query: 1483 LDLESEKHVQDALRKVSKRATTIVVAHRL-STIREANMIAVVRDGAVVEYG 1532
LD S +++ ++++ + T +V H + R ++ + G +VEYG
Sbjct: 178 LDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYG 228
|
Length = 251 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 91.3 bits (227), Expect = 5e-20
Identities = 65/219 (29%), Positives = 111/219 (50%), Gaps = 29/219 (13%)
Query: 676 KGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLD 735
V+ Y R +L L+L IP+ + +A+VG SG GKST+ L+ P+ G + L
Sbjct: 16 NAVSKRYGER---TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGEL-LA 71
Query: 736 GHDLKSLQVKWLRTQIGMVGQEPILFA-TSILENV---LMGKENATMKEAVAACKAASAH 791
G + + R ++ Q+ L +++NV L G+ +A+AA
Sbjct: 72 G----TAPLAEAREDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAA------- 120
Query: 792 SFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQ 851
+G + + LSGGQKQR+ALARA+I P +LLLDEP ALD+ + +Q
Sbjct: 121 -------VGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQ 173
Query: 852 QAIDKI--SVGRTTIVIAHRLA-TVKNANTIVVLDQGSV 887
I+ + G T +++ H ++ V A+ ++++++G +
Sbjct: 174 DLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKI 212
|
Length = 257 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 90.2 bits (224), Expect = 5e-20
Identities = 65/185 (35%), Positives = 96/185 (51%), Gaps = 19/185 (10%)
Query: 1332 LKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQ 1391
LK L ++ G ++L+G SG GKST++ LI P G V++EG + E
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPG-----PD 55
Query: 1392 TALVGQEPALFAG-TIRDNIALG----NPKASWAEIEEAAEEAYIHKFISSLPQGYETQV 1446
+V Q +L T+R+NIAL P S +E EE H + L + + +
Sbjct: 56 RMVVFQNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEE---HIALVGLTEAADKRP 112
Query: 1447 GESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSK--RATT 1504
G QLSGG KQR+AIARA+ +VLLLDE ALD + ++Q+ L ++ + R T
Sbjct: 113 G----QLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTV 168
Query: 1505 IVVAH 1509
++V H
Sbjct: 169 LMVTH 173
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 91.2 bits (227), Expect = 6e-20
Identities = 65/224 (29%), Positives = 115/224 (51%), Gaps = 20/224 (8%)
Query: 1331 VLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYD-----PNQGKVMIEGVDL--REI 1383
L D +++ + A +G SG GKST++ R D +G++ ++G ++ +++
Sbjct: 40 ALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99
Query: 1384 NVKWLRKQTALVGQEPALFAGTIRDNIALG------NPKASWAEIEEAAEEAYIHKFISS 1437
+V LR++ +V Q P F +I +N+ G N + E E + ++
Sbjct: 100 DVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRG------AA 153
Query: 1438 LPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRK 1497
L + ++ E+ LSGGQ+QR+ IARAI VLLLDE +SALD S +++ + +
Sbjct: 154 LWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITE 213
Query: 1498 VSKRATTIVVAHRL-STIREANMIAVVRDGAVVEYGSHETLLAS 1540
+ + T ++V H + R ++ A + G +VEYG +TL S
Sbjct: 214 LKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDTLFTS 257
|
Length = 272 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 92.9 bits (231), Expect = 7e-20
Identities = 72/236 (30%), Positives = 130/236 (55%), Gaps = 30/236 (12%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
+ LK +T + S TV+ + L +K G+MV L+G SG GK+TV+ L+ P +G++
Sbjct: 7 VVLKNITKRFGS---NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQI 63
Query: 1374 MIEGVDLREINVKWLRKQTALVGQEPALFAG-TIRDNIA-----LGNPKASWAEIEEAAE 1427
I+G D+ +++ ++ +V Q ALF ++ +N+ LG PK E ++ +
Sbjct: 64 FIDGEDVTHRSIQ--QRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKE---ERKQRVK 118
Query: 1428 EAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLES 1487
EA + L G+E + + Q+SGGQ+QR+A+ARA++ +VLL DE S LD
Sbjct: 119 EALE---LVDL-AGFEDRYVD---QISGGQQQRVALARALILKPKVLLFDEPLSNLDANL 171
Query: 1488 EKHVQDALRKVSKR--ATTIVVAHRLSTIREA----NMIAVVRDGAVVEYGSHETL 1537
+ +++ +R++ ++ T++ V H S EA + + V+ G +++ GS + L
Sbjct: 172 RRSMREKIRELQQQFNITSLYVTHDQS---EAFAVSDTVIVMNKGKIMQIGSPQEL 224
|
Length = 351 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 89.8 bits (223), Expect = 7e-20
Identities = 50/172 (29%), Positives = 85/172 (49%), Gaps = 14/172 (8%)
Query: 687 ETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKW 746
+ IL +++ + + + + G SG GKST+ ++ PT G + +G D+ +L+ +
Sbjct: 19 DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEI 78
Query: 747 LRTQIGMVGQEPILFATSILENVL----MGKENATMKEAVAACKAASAHSFISELPLGYD 802
R Q+ Q P LF ++ +N++ + + F LP D
Sbjct: 79 YRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIF-----LDDLERF--ALP---D 128
Query: 803 TQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAI 854
T + +LSGG+KQRI+L R + P++LLLDE TSALD ++ V + I
Sbjct: 129 TILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEII 180
|
Length = 225 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 90.6 bits (225), Expect = 8e-20
Identities = 67/231 (29%), Positives = 110/231 (47%), Gaps = 32/231 (13%)
Query: 1331 VLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLR--------- 1381
VLK L+ G +++++G SGSGKST + I P+ G + + G ++R
Sbjct: 21 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQL 80
Query: 1382 ----EINVKWLRKQTALVGQEPALFAG-TIRDNI------ALGNPKASWAEIEEAAEEAY 1430
+ ++ LR + +V Q L++ T+ +N+ LG KA IE A E Y
Sbjct: 81 KPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAE--AIERA--EKY 136
Query: 1431 IHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKH 1490
+ K G + LSGGQ+QR+AIARA+ V+L DE +SALD E
Sbjct: 137 LAKV------GIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGE 190
Query: 1491 VQDALRKVSKRA-TTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLA 1539
V ++ +++ T +VV H + R+ ++ + + G + E G E +
Sbjct: 191 VLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQVFG 241
|
Length = 256 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 90.5 bits (225), Expect = 8e-20
Identities = 61/229 (26%), Positives = 101/229 (44%), Gaps = 36/229 (15%)
Query: 690 ILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWL-R 748
+L ++L + + LA++G +G GKST+ + P G +TL+G L S + L R
Sbjct: 16 LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELAR 75
Query: 749 TQIGMVGQEPILFATSILENVLMGK-----------ENATMKEAVAACKAAS-AHSFISE 796
+ + + F ++ E V MG+ + +A+AA + A
Sbjct: 76 HRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDY-- 133
Query: 797 LPLGYDTQVGDRGTQLSGGQKQRIALARAM------IKDPRILLLDEPTSALD-SESESI 849
LSGG++QR+ LAR + + R L LDEPTSALD +
Sbjct: 134 -------------RTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHT 180
Query: 850 VQQAIDKISVGRTTIVIAHRL-ATVKNANTIVVLDQGSVVEIGNHRQLL 897
++ A G + + H L + A+ IV+L QG V+ G+ + +L
Sbjct: 181 LRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVL 229
|
Length = 259 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 92.8 bits (230), Expect = 1e-19
Identities = 66/215 (30%), Positives = 108/215 (50%), Gaps = 13/215 (6%)
Query: 691 LRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLR-- 748
++ +L I + ++G SG GKST+ L+ R +PT+G + +DG D+ + LR
Sbjct: 44 VKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREV 103
Query: 749 --TQIGMVGQEPILFA-TSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQV 805
+I MV Q L ++L+N G E A + KA A +G +
Sbjct: 104 RRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALR-----QVGLENYA 158
Query: 806 GDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVG--RTT 863
+LSGG +QR+ LARA+ +P ILL+DE SALD + +Q + K+ RT
Sbjct: 159 HSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTI 218
Query: 864 IVIAHRL-ATVKNANTIVVLDQGSVVEIGNHRQLL 897
+ I+H L ++ + I ++ G VV++G ++L
Sbjct: 219 VFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEIL 253
|
Length = 400 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 93.8 bits (234), Expect = 1e-19
Identities = 64/232 (27%), Positives = 119/232 (51%), Gaps = 25/232 (10%)
Query: 1310 KPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPN 1369
+E++ +T +P V D L VK G + AL+G +G+GKST++ ++ Y P+
Sbjct: 1 MEPALEMRGITKRFPG---VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPD 57
Query: 1370 QGKVMIEGVDLREINVK----WLRKQTALVGQEPALFAG-TIRDNIALGNPKASWAEIEE 1424
G++ ++G +E+ +K +R +V Q L T+ +NI LG + I+
Sbjct: 58 SGEIRVDG---KEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDR 114
Query: 1425 AAEEAYIHKFISS--LPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSA 1482
A I + LP + +V + LS G++QR+ I +A+ +G+R+L+LDE ++
Sbjct: 115 RQARARIKELSERYGLPVDPDAKVAD----LSVGEQQRVEILKALYRGARLLILDEPTAV 170
Query: 1483 LDLESEKHVQD---ALRKVSKRATTIV-VAHRLSTIRE-ANMIAVVRDGAVV 1529
L + + + LR+++ TI+ + H+L + A+ + V+R G VV
Sbjct: 171 L---TPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVV 219
|
Length = 501 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 90.2 bits (225), Expect = 1e-19
Identities = 69/234 (29%), Positives = 114/234 (48%), Gaps = 28/234 (11%)
Query: 1330 TVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLR 1389
T+L D L ++ G +VA++G +G+GKST++ + P+ G+V + G L + + L
Sbjct: 16 TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELA 75
Query: 1390 KQTALVGQEPAL-FAGTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGE 1448
++ A++ Q +L F T+ + +A+G +A + L QV
Sbjct: 76 RRRAVLPQHSSLSFPFTVEEVVAMG--RAPHGLSRAEDDA---------LVAAALAQVDL 124
Query: 1449 SGV------QLSGGQKQRIAIARAIL------KGSRVLLLDEASSALDLESEKHVQDALR 1496
+ + QLSGG++QR+ +AR + R LLLDE +SALDL + HV R
Sbjct: 125 AHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLAR 184
Query: 1497 KVSKR--ATTIVVAHRLS-TIREANMIAVVRDGAVVEYGS-HETLLASHLNGVY 1546
+++ IVV H L+ R A+ I ++ G +V G+ E L L VY
Sbjct: 185 QLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVLTPETLRRVY 238
|
Length = 258 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 90.9 bits (225), Expect = 1e-19
Identities = 63/227 (27%), Positives = 108/227 (47%), Gaps = 21/227 (9%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
+E + + F Y + L ++ I + ++++G +G GKST LI+ ++ +G +
Sbjct: 5 LEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKV 64
Query: 733 TLDGHDLKSLQVKWLRTQIGMVGQEP--ILFATSILENVLMGKENA------TMKEAVAA 784
+DG L + V LR +IGMV Q P ++ ++V G EN +K A
Sbjct: 65 KIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEA 124
Query: 785 CKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDS 844
A + F + P +LSGGQKQR+A+A + P I++LDE TS LD
Sbjct: 125 LLAVNMLDFKTREP-----------ARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDP 173
Query: 845 ESESIVQQAIDKI--SVGRTTIVIAHRLATVKNANTIVVLDQGSVVE 889
+ + I +I T + I H L +++ I+V+ G +++
Sbjct: 174 TGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIK 220
|
Length = 277 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 92.1 bits (229), Expect = 1e-19
Identities = 67/215 (31%), Positives = 107/215 (49%), Gaps = 15/215 (6%)
Query: 694 LNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDL----KSLQVKWLRT 749
+ +P A+ G SG GK+T+ LI P +G I L+G L K + + +
Sbjct: 16 ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKR 75
Query: 750 QIGMVGQEPILFA-TSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDR 808
+IG V QE LF S+ N+ G MK A + + S + EL LG +G
Sbjct: 76 RIGYVFQEARLFPHLSVRGNLRYG-----MKRARPSERRISFER-VIEL-LGIGHLLGRL 128
Query: 809 GTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKIS--VGRTTIVI 866
+LSGG+KQR+A+ RA++ PR+LL+DEP +ALD + + ++++ G + +
Sbjct: 129 PGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYV 188
Query: 867 AHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLERG 900
+H L V A+ +VVL+ G V G ++
Sbjct: 189 SHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASP 223
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 90.2 bits (224), Expect = 1e-19
Identities = 68/228 (29%), Positives = 118/228 (51%), Gaps = 23/228 (10%)
Query: 1332 LKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYD--PN---QGKVMIEGVDL--REIN 1384
+K+ L + + A +G SG GKST++ R D P +GKV G +L +++
Sbjct: 26 VKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVD 85
Query: 1385 VKWLRKQTALVGQEPALFAGTIRDNIALGNPKASW--AEIEEAAEEAYIHKFISSLPQGY 1442
+R++ +V Q+P F +I DNIA G + + +++E E + ++L
Sbjct: 86 PVEVRRRIGMVFQKPNPFPKSIYDNIAYG-ARINGYKGDMDELVERSLRQ---AALWDEV 141
Query: 1443 ETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRA 1502
+ ++ +SG+ LSGGQ+QR+ IARAI V+L+DE SALD S +++ + ++ ++
Sbjct: 142 KDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQY 201
Query: 1503 TTIVVAHRL-STIREANMIAVV---------RDGAVVEYGSHETLLAS 1540
T I+V H + R ++M A R G +VE+ E + S
Sbjct: 202 TIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEFDRTEKIFNS 249
|
Length = 264 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 88.7 bits (221), Expect = 1e-19
Identities = 57/233 (24%), Positives = 101/233 (43%), Gaps = 36/233 (15%)
Query: 670 SGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTK 729
S ++ G+ E L+ ++ +P + + L+G +G GKST+ L+ Y P
Sbjct: 17 SSSLKKLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDS 76
Query: 730 GLITLDGHDLKSLQVKWLRTQIGM-VGQEPILFATSILENV-----LMGKENATMKEAVA 783
G +T+ G +V L +G+ G P L + EN+ L+G + E +
Sbjct: 77 GTVTVRG------RVSSL---LGLGGGFNPEL---TGRENIYLNGRLLGLSRKEIDEKID 124
Query: 784 ACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALD 843
SEL D V S G K R+A A A +P ILL+DE + D
Sbjct: 125 EIIE------FSELGDFIDLPVK----TYSSGMKARLAFAIATALEPDILLIDEVLAVGD 174
Query: 844 SESESIVQQAIDKI----SVGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIG 891
+ ++ ++ G+T I+++H +++K + +VL++G + G
Sbjct: 175 ---AAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 89.2 bits (221), Expect = 2e-19
Identities = 67/217 (30%), Positives = 117/217 (53%), Gaps = 16/217 (7%)
Query: 1328 EVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIW----LIQRFYDPN-QGKVMIEGVDLRE 1382
+V VL L++ ++ AL+G SGSGKST++ LI+ + + G+V ++G D+ +
Sbjct: 15 QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFK 74
Query: 1383 INVKWLRKQTALVGQEPALFAG-TIRDNIALGNPK-----ASWAEIEEAAEEAYIHKFIS 1436
++V LR++ +V Q P +I +N+ALG K S E++E A + K +
Sbjct: 75 MDVIELRRRVQMVFQIPNPIPNLSIFENVALG-LKLNRLVKSKKELQERVRWA-LEK--A 130
Query: 1437 SLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALR 1496
L + ++ +LSGGQ+QR+ IARA+ VLL DE ++ LD E+ ++
Sbjct: 131 QLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFL 190
Query: 1497 KVSKRATTIVVAH-RLSTIREANMIAVVRDGAVVEYG 1532
++ K T ++V H R ++ +A + G +VE+G
Sbjct: 191 ELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWG 227
|
Length = 250 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 89.3 bits (221), Expect = 2e-19
Identities = 65/211 (30%), Positives = 109/211 (51%), Gaps = 12/211 (5%)
Query: 691 LRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTK-----GLITLDGHDLKS--LQ 743
L ++L + AL+G SG GKST + R D + G I +G ++ +
Sbjct: 20 LHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMD 79
Query: 744 VKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDT 803
+ LR ++GMV Q+P F S+ +NV G + A +K+ + + + + +T
Sbjct: 80 LVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEES--LKQAAIWKET 137
Query: 804 QVG-DRGTQ-LSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGR 861
+ DR Q SGGQ+QRI +ARA+ P+++LLDEPTSALD S S +++ + ++
Sbjct: 138 KDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQY 197
Query: 862 TTIVIAHRLATV-KNANTIVVLDQGSVVEIG 891
T I++ H L + ++ L G ++E G
Sbjct: 198 TFIMVTHNLQQAGRISDQTAFLMNGDLIEAG 228
|
Length = 251 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 89.8 bits (223), Expect = 2e-19
Identities = 70/215 (32%), Positives = 113/215 (52%), Gaps = 21/215 (9%)
Query: 682 YPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKS 741
Y +P L +NL + S + L ++G SG GK+T+ LI F G ITLDG
Sbjct: 11 YGGKP---ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDG----- 62
Query: 742 LQVKWLRTQIGMVGQ-EPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPL- 799
V+ + G+V Q E +L ++ +NV G + A +++ + AH + ++ L
Sbjct: 63 KPVEGPGAERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQ---RLEIAHQMLKKVGLE 119
Query: 800 GYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKI-- 857
G + + QLSGGQ+QR+ +ARA+ +P++LLLDEP ALD+ + +Q + K+
Sbjct: 120 GAEKR---YIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQ 176
Query: 858 SVGRTTIVIAHRL-ATVKNANTIVVL--DQGSVVE 889
G+ ++I H + V A +V+L G VVE
Sbjct: 177 ETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVE 211
|
Length = 255 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 90.1 bits (223), Expect = 2e-19
Identities = 71/228 (31%), Positives = 117/228 (51%), Gaps = 23/228 (10%)
Query: 1332 LKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYD--PN---QGKVMIEGVDL--REIN 1384
L D LK+ ++A +G SG GKST++ R D P +G+++ ++ +IN
Sbjct: 36 LVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQIN 95
Query: 1385 VKWLRKQTALVGQEPALFAGTIRDNIALGNPKASW--AEIEEAAEEAYIHKFISSLPQGY 1442
LR+Q +V Q P F +I +NIA P+A+ ++E E++ +++ +
Sbjct: 96 SVKLRRQVGMVFQRPNPFPKSIYENIAFA-PRANGYKGNLDELVEDSLRR---AAIWEEV 151
Query: 1443 ETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRA 1502
+ ++ E G LSGGQ+QR+ IARAI VLL+DE SALD S + V++ ++ ++
Sbjct: 152 KDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQY 211
Query: 1503 TTIVVAHRLSTI-REANMIAVV---------RDGAVVEYGSHETLLAS 1540
T I+V H + R A+ A R G +VE+ E + S
Sbjct: 212 TIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVEFSPTEQMFGS 259
|
Length = 274 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 88.4 bits (219), Expect = 2e-19
Identities = 68/233 (29%), Positives = 111/233 (47%), Gaps = 25/233 (10%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
I F+ V+ AY + L+ + + + L G SG GKST+ LI P+ G I
Sbjct: 2 IRFEHVSKAYLGGRQA--LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKI 59
Query: 733 TLDGHD---LKSLQVKWLRTQIGMVGQE-PILFATSILENVLM-----GKENATMKEAVA 783
GHD LK+ +V +LR QIGM+ Q+ +L ++ +NV + G ++ V+
Sbjct: 60 WFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVS 119
Query: 784 ACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALD 843
A +G + + QLSGG++QR+ +ARA++ P +LL DEPT LD
Sbjct: 120 AALDK----------VGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLD 169
Query: 844 SE-SESIVQQAIDKISVGRTTIVIAHRLATVKNAN-TIVVLDQGSVVEIGNHR 894
SE I++ + VG T ++ H + + + ++ L G + G
Sbjct: 170 DALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLH--GGVG 220
|
Length = 222 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 91.2 bits (227), Expect = 2e-19
Identities = 59/217 (27%), Positives = 100/217 (46%), Gaps = 25/217 (11%)
Query: 694 LNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDL----KSLQVKWLRT 749
N +P+ AL G SG GK+++ +I P +G I L+G L K + + +
Sbjct: 17 ANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKR 76
Query: 750 QIGMVGQEPILFA-TSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDR 808
+IG V Q+ LF ++ N+ G + + LG + +
Sbjct: 77 RIGYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQLVAL-----------LGIEHLLDRY 125
Query: 809 GTQLSGGQKQRIALARAMIKDPRILLLDEPTSALD----SESESIVQQAIDKISVGRTTI 864
LSGG+KQR+A+ RA++ P +LL+DEP ++LD E +++ D+I I
Sbjct: 126 PGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEI---NIPI 182
Query: 865 V-IAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLER 899
+ ++H L V A+ +VVL+ G V G ++
Sbjct: 183 LYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGS 219
|
Length = 352 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 89.7 bits (223), Expect = 3e-19
Identities = 72/239 (30%), Positives = 112/239 (46%), Gaps = 19/239 (7%)
Query: 1314 IELKMVTFTY-PSRP-EVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQG 1371
I + V Y P E L D + + GS VA++G +GSGKST++ + P G
Sbjct: 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSG 62
Query: 1372 KVMIEGVDL----REINVKWLRKQTALVGQ--EPALFAGTIRDNIALG--NPKASWAEIE 1423
V I + + +K LRK+ +V Q E LF T+ +I G N S + +
Sbjct: 63 TVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAK 122
Query: 1424 EAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSAL 1483
+ A E + LP+ + S +LSGGQ +R+AIA + VL+LDE ++ L
Sbjct: 123 QKAREMI---ELVGLPEELLAR---SPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGL 176
Query: 1484 DLESEKHVQDALRKVSKRA--TTIVVAHRLSTI-REANMIAVVRDGAVVEYGSHETLLA 1539
D + K + + K+ K TT++V H + R A+ I V+ G V G+ + A
Sbjct: 177 DPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFA 235
|
Length = 290 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 89.5 bits (222), Expect = 3e-19
Identities = 80/269 (29%), Positives = 131/269 (48%), Gaps = 29/269 (10%)
Query: 1312 LGIELKMVTFTY-PSRP-EVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRF---Y 1366
+ I+ + V + Y P P E L + +++ GS VALVG +GSGKST L+Q F
Sbjct: 1 MSIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKST---LMQHFNALL 57
Query: 1367 DPNQGKVMIEGVDLR----EINVKWLRKQTALVGQ--EPALFAGTIRDNIALGNPKASWA 1420
P+ G + I G + N+K LRK+ +LV Q E LF T+ ++ G PK
Sbjct: 58 KPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFG-PKNFGF 116
Query: 1421 EIEEAAEEAYIHKFISSLPQGYETQVGE-SGVQLSGGQKQRIAIARAILKGSRVLLLDEA 1479
+EA E+A K++ + G + S +LSGGQ +R+AIA + +L LDE
Sbjct: 117 SEDEAKEKAL--KWLKKV--GLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEP 172
Query: 1480 SSALDLESEKHVQDALRKVSKRA-TTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETL 1537
++ LD E K + + K T I+V H + + E A+ + V+ G ++++ S + +
Sbjct: 173 AAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEI 232
Query: 1538 LAS-------HLNGVYASLVRAETEANAF 1559
+ +L+ S ++ E F
Sbjct: 233 FSDKEWLKKHYLDEPATSRFASKLEKGGF 261
|
Length = 287 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 88.9 bits (220), Expect = 3e-19
Identities = 69/217 (31%), Positives = 107/217 (49%), Gaps = 26/217 (11%)
Query: 1332 LKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYD--PN---QGKVMIEGVDL---REI 1383
LK L + AL+G SG GKST + + R D P G V + G ++ E
Sbjct: 21 LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80
Query: 1384 NVKWLRKQTALVGQEPALFAGTIRDNIALGNPKASWAE---IEEAAEEAYIHKFISSLPQ 1440
V+ LRKQ +V Q+P F +I +N+ G A + ++EA E +SL Q
Sbjct: 81 VVQ-LRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVE--------TSLKQ 131
Query: 1441 G-----YETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDAL 1495
+ + ES + LSGGQ+QR+ IAR + V+LLDE +SALD S +++ L
Sbjct: 132 AAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENML 191
Query: 1496 RKVSKRATTIVVAHRLSTI-REANMIAVVRDGAVVEY 1531
++ + T I+V H + R ++ A G ++E+
Sbjct: 192 LELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEF 228
|
Length = 252 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 89.3 bits (221), Expect = 3e-19
Identities = 70/232 (30%), Positives = 120/232 (51%), Gaps = 15/232 (6%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
I L+ V+++YP L++ L +K G + ++G +GSGKST+ + P +GKV
Sbjct: 2 IRLENVSYSYPD--GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKV 59
Query: 1374 MIEGVDLREIN-VKWLRKQTALVGQEPAL-FAG-TIRDNIALGNPKASWAEIEEAAEEAY 1430
++ G+D + + ++ +RK +V Q P F G T+ +++A G IE
Sbjct: 60 LVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIE------- 112
Query: 1431 IHKFIS-SLPQ-GYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESE 1488
I K + +L + G E S LSGGQ Q +A+A + L+ DE +S LD +S
Sbjct: 113 IRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSG 172
Query: 1489 KHVQDALRKVSKRATTIV-VAHRLSTIREANMIAVVRDGAVVEYGSHETLLA 1539
V + ++K+ ++ TIV + H L + +A+ I V+ G +V G E +L+
Sbjct: 173 IAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLS 224
|
Length = 274 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 88.4 bits (219), Expect = 4e-19
Identities = 62/215 (28%), Positives = 114/215 (53%), Gaps = 16/215 (7%)
Query: 1331 VLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQ-----GKVMIEGVDL--REI 1383
V+K LK+ + AL+G SG GKST++ R + N+ G+V + G ++ ++
Sbjct: 19 VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDV 78
Query: 1384 NVKWLRKQTALVGQEPALFAG-TIRDNIALG----NPKASWAEIEEAAEEAYIHKFISSL 1438
+ +R++ +V Q P F TI DN+A+G S E++E E A + K ++L
Sbjct: 79 DPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWA-LKK--AAL 135
Query: 1439 PQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKV 1498
+ ++ + LSGGQ+QR+ IARA+ ++LL+DE ++ +D +++ L ++
Sbjct: 136 WDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFEL 195
Query: 1499 SKRATTIVVAHR-LSTIREANMIAVVRDGAVVEYG 1532
K T ++V H R ++ +A + G ++E G
Sbjct: 196 KKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVG 230
|
Length = 253 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 89.0 bits (220), Expect = 4e-19
Identities = 64/233 (27%), Positives = 119/233 (51%), Gaps = 13/233 (5%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
+E++ + F Y +V L + G V+++G +GSGKST LI ++ +GKV
Sbjct: 5 LEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKV 64
Query: 1374 MIEGVDLREINVKWLRKQTALVGQEP--ALFAGTIRDNIALG--NPKASWAEIEEAAEEA 1429
I+G L NV LR++ +V Q P T+ D++A G N E+ + +EA
Sbjct: 65 KIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEA 124
Query: 1430 YIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEK 1489
+ ++ L ++T+ +LSGGQKQR+A+A I +++LDE++S LD +
Sbjct: 125 LLA--VNML--DFKTR---EPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQ 177
Query: 1490 HVQDALRKVSKR--ATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETLLAS 1540
+ + ++ ++ T + + H L ++ I V++ G +++ + L A+
Sbjct: 178 EIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFAT 230
|
Length = 277 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 90.6 bits (225), Expect = 4e-19
Identities = 67/221 (30%), Positives = 106/221 (47%), Gaps = 19/221 (8%)
Query: 1332 LKDFCLKVK----GGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLRE----I 1383
L DF L G + A+ G SGSGK+T+I LI P++G++++ G L + I
Sbjct: 9 LGDFSLDADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGI 68
Query: 1384 NVKWLRKQTALVGQEPALFAG-TIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGY 1442
+ +++ V QE LF ++R N+ G +A + E I G
Sbjct: 69 FLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRAR-PSERRISFERVIELL------GI 121
Query: 1443 ETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSK-- 1500
+G +LSGG+KQR+AI RA+L R+LL+DE +ALD + + L ++
Sbjct: 122 GHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEF 181
Query: 1501 RATTIVVAHRLSTI-REANMIAVVRDGAVVEYGSHETLLAS 1540
+ V+H L + R A+ + V+ DG V G + AS
Sbjct: 182 GIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWAS 222
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 88.7 bits (220), Expect = 4e-19
Identities = 60/240 (25%), Positives = 106/240 (44%), Gaps = 27/240 (11%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
+ V+++ R I+ +++ P L+G +G GKST+ L+ P G +
Sbjct: 2 LRLSRVSWSAGGRL---IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTV 58
Query: 733 TLDGHDLKSLQVKWLRTQIGMVGQE-PILFATSILENVLMGK---------ENATMKEAV 782
L G DL L + ++ +V Q+ ++ + V +G+ ++ V
Sbjct: 59 DLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVV 118
Query: 783 AACKA-ASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSA 841
A T LSGG++QR+ +ARA+ ++P++LLLDEPT+
Sbjct: 119 DRALARTELSHLADR---DMST--------LSGGERQRVHVARALAQEPKLLLLDEPTNH 167
Query: 842 LDSESESIVQQAIDKISVGRTTIVIA-HRLA-TVKNANTIVVLDQGSVVEIGNHRQLLER 899
LD ++ + +++ T+V A H L + +VVLD G VV G R++L
Sbjct: 168 LDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLTP 227
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 89.3 bits (221), Expect = 4e-19
Identities = 73/232 (31%), Positives = 116/232 (50%), Gaps = 16/232 (6%)
Query: 1314 IELKMVTFTYPSRP--EVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQG 1371
I L V++TY + E L + L K + ++G +GSGKST+I L G
Sbjct: 7 IILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETG 66
Query: 1372 KVMIEG----VDLREIN-VKWLRKQTALVGQEP--ALFAGTIRDNIALGNPKASWAEIEE 1424
+ ++ +L++I VK LRK+ LV Q P LF TI +IA G P +E
Sbjct: 67 QTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFG-PVNLGENKQE 125
Query: 1425 AAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALD 1484
A ++ + LP+ Y V S +LSGGQK+R+A+A I L+LDE + LD
Sbjct: 126 AYKKVPELLKLVQLPEDY---VKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLD 182
Query: 1485 LESEKHVQDALRKVSK--RATTIVVAHRLSTI-REANMIAVVRDGAVVEYGS 1533
+ E+ + +++K + I+V H + + R A+ + V+ +G V+ GS
Sbjct: 183 PKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGS 234
|
Length = 289 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 87.7 bits (218), Expect = 5e-19
Identities = 55/147 (37%), Positives = 81/147 (55%), Gaps = 20/147 (13%)
Query: 704 LALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIGMVGQEPILFA- 762
+A++G SG GKST+ LI F P G +TL+G D + R + M+ QE LF+
Sbjct: 28 VAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPS--RRPVSMLFQENNLFSH 85
Query: 763 TSILENVLMG-----KENATMKEAVAA-CKAASAHSFISELPLGYDTQVGDRGTQLSGGQ 816
++ +N+ +G K NA +E + A + ++ LP QLSGGQ
Sbjct: 86 LTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP-----------GQLSGGQ 134
Query: 817 KQRIALARAMIKDPRILLLDEPTSALD 843
+QR+ALAR ++++ ILLLDEP SALD
Sbjct: 135 RQRVALARCLVREQPILLLDEPFSALD 161
|
Length = 232 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 88.2 bits (219), Expect = 5e-19
Identities = 69/228 (30%), Positives = 110/228 (48%), Gaps = 25/228 (10%)
Query: 1305 KLERSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQR 1364
+L + PL + V+ Y R TVL L + G VA+VG SG GKST++ L+
Sbjct: 6 RLNQGTPLLLN--AVSKRYGER---TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAG 60
Query: 1365 FYDPNQGKVMIEGVDLREINVKWLRKQTALVGQEPALFA-GTIRDNIALGNPKASWAEIE 1423
P+ G+++ L E R+ T L+ Q+ L + DN+ LG K W +
Sbjct: 61 LETPSAGELLAGTAPLAEA-----REDTRLMFQDARLLPWKKVIDNVGLG-LKGQWRDAA 114
Query: 1424 EAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSAL 1483
A A G + E LSGGQKQR+A+ARA++ +LLLDE AL
Sbjct: 115 LQALAAV----------GLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGAL 164
Query: 1484 DLESEKHVQDALRKVSKRA--TTIVVAHRLS-TIREANMIAVVRDGAV 1528
D + +QD + + ++ T ++V H +S + A+ + ++ +G +
Sbjct: 165 DALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKI 212
|
Length = 257 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 90.5 bits (225), Expect = 5e-19
Identities = 67/213 (31%), Positives = 107/213 (50%), Gaps = 19/213 (8%)
Query: 1331 VLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRK 1390
VL D L + G MVAL+G SGSGK+T++ +I G + G D+ ++ + +
Sbjct: 17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHAR--DR 74
Query: 1391 QTALVGQEPALFAG-TIRDNIALG------NPKASWAEIEEAAEEAYIHKFISSLPQGYE 1443
+ V Q ALF T+ DNIA G + + A I+ + ++ L Y
Sbjct: 75 KVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP 134
Query: 1444 TQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSK--R 1501
QLSGGQKQR+A+ARA+ ++LLLDE ALD + K ++ LR++ + +
Sbjct: 135 A-------QLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELK 187
Query: 1502 ATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGS 1533
T++ V H E A+ + V+ G + + G+
Sbjct: 188 FTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGT 220
|
Length = 353 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 88.7 bits (220), Expect = 5e-19
Identities = 63/224 (28%), Positives = 115/224 (51%), Gaps = 12/224 (5%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
IE + + ++Y E L ++N + P + +A++G +G GKST+F PT G +
Sbjct: 4 IETRDLCYSYSGSKE--ALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSV 61
Query: 733 TLDGHDLKSLQVKWLRTQIGMVGQEP--ILFATSILENVLMGKENATMKEAVAACKAASA 790
+ G + ++ +R +G+V Q P +F+ ++ +++ G N + E A + +SA
Sbjct: 62 LIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSA 121
Query: 791 HSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIV 850
LG + LSGG+K+R+A+A + +P++L+LDEPT+ LD + +
Sbjct: 122 LHM-----LGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKEL 176
Query: 851 QQAIDKISV--GRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIG 891
++ + G T I H+L V A+ I V+D+G +V G
Sbjct: 177 IDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYG 220
|
Length = 277 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 88.7 bits (220), Expect = 6e-19
Identities = 67/239 (28%), Positives = 120/239 (50%), Gaps = 17/239 (7%)
Query: 1314 IELKMVTFTY-PSRP-EVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQG 1371
I V++TY P E + D + + G A+VG +GSGKST+I I P G
Sbjct: 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTG 62
Query: 1372 KVMIEGVDL----REINVKWLRKQTALVGQ--EPALFAGTIRDNIALGNPKASWAEIEEA 1425
V ++ + + ++ ++ +RK+ +V Q E LF T+ I G PK ++E
Sbjct: 63 TVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFG-PKNFKMNLDEV 121
Query: 1426 AEEAYIHKFISSLPQGYETQVGE-SGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALD 1484
A+ + + L G+ V S Q+SGGQ ++IAI + +++LDE ++ LD
Sbjct: 122 KNYAH--RLLMDL--GFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLD 177
Query: 1485 LESEKHVQDALRK--VSKRATTIVVAHRLSTI-REANMIAVVRDGAVVEYGSHETLLAS 1540
+S++ V L+ + T I+V+H ++ + R A+ + V+++G++V S + L
Sbjct: 178 PQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKD 236
|
Length = 286 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 88.0 bits (218), Expect = 6e-19
Identities = 69/245 (28%), Positives = 115/245 (46%), Gaps = 28/245 (11%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
+ F VT + +L LN + + + +AL+G SG GKST+ ++ +G I
Sbjct: 1 VRFSDVTKRFG---ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQI 57
Query: 733 TLDGHDLKSLQ-------------VKWLRTQIGMVGQEPILFA-TSILENVLMGKENATM 778
++G L + ++ +R +IGMV Q LF ++L+NV A +
Sbjct: 58 QVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTE----APV 113
Query: 779 KEAVAACKAASAHSFISEL--PLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLD 836
V A A EL +G + QLSGGQ+QR+A+ARA+ P+++L D
Sbjct: 114 L--VLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFD 171
Query: 837 EPTSALDSESESIVQQAIDKISVGR--TTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNH 893
E TSALD E V I +++ T +++ H + + A+ + D+G +VE G
Sbjct: 172 EVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKP 231
Query: 894 RQLLE 898
++
Sbjct: 232 DEIFR 236
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 89.4 bits (221), Expect = 7e-19
Identities = 69/234 (29%), Positives = 121/234 (51%), Gaps = 13/234 (5%)
Query: 1315 ELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYD-----PN 1369
E++ F Y +R + VL D L +K + A +G SG GKST + + + D +
Sbjct: 82 EIRNFNFWYMNRTK-HVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSH 140
Query: 1370 QGKVMIEGVDLR--EINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAE 1427
+G++ G + R +I+ LR + +V Q+P F +I DN+A G P+ + +
Sbjct: 141 EGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYG-PRNNGIN-DRKIL 198
Query: 1428 EAYIHKFISSLPQGYETQ--VGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDL 1485
E + K + S E + + ++G LSGGQ+QR+ IARAI VLL+DE +SALD
Sbjct: 199 EKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDP 258
Query: 1486 ESEKHVQDALRKVSKRATTIVVAHRLSTI-REANMIAVVRDGAVVEYGSHETLL 1538
+ +++ + ++ K+ + I+V H ++ R ++ G + E G +T+
Sbjct: 259 IATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIF 312
|
Length = 329 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 89.7 bits (223), Expect = 7e-19
Identities = 61/221 (27%), Positives = 105/221 (47%), Gaps = 23/221 (10%)
Query: 1332 LKDFCLKVK----GGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDL----REI 1383
L +F L + AL G SGSGK+++I +I P++G++ + G L + I
Sbjct: 10 LGNFALDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGI 69
Query: 1384 NVKWLRKQTALVGQEPALFAG-TIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGY 1442
+ +++ V Q+ LF T+R N+ G K+ A+ ++ I + P
Sbjct: 70 FLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPG-- 127
Query: 1443 ETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSK-- 1500
LSGG+KQR+AI RA+L +LL+DE ++LDL ++ + L ++
Sbjct: 128 ---------TLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEI 178
Query: 1501 RATTIVVAHRLSTI-REANMIAVVRDGAVVEYGSHETLLAS 1540
+ V+H L + R A+ + V+ +G V G E + S
Sbjct: 179 NIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGS 219
|
Length = 352 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 88.2 bits (218), Expect = 7e-19
Identities = 74/249 (29%), Positives = 119/249 (47%), Gaps = 20/249 (8%)
Query: 690 ILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGL-----ITLDGHDLKSLQ- 743
+L +++ P+ +L+G +G GK+T + R D G + L G + + +
Sbjct: 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95
Query: 744 VKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPL--GY 801
V R ++GM+ Q P F SI++NVL G + A A ++E+ L
Sbjct: 96 VLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQAR--LTEVGLWDAV 153
Query: 802 DTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGR 861
++ D +LSGGQ+Q + LAR + +P +LLLDEPTSALD + +++ I ++
Sbjct: 154 KDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRL 213
Query: 862 TTIVIAHRLA-TVKNANTIVVLDQGSVVEIGNHRQLLERGGAYHDLVKLASEA--VSQPQ 918
T I++ H LA + ++ + G +VE G QL K A A V+
Sbjct: 214 TVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSSP-------KHAETARYVAGLS 266
Query: 919 SKQKDAKRG 927
KDAKRG
Sbjct: 267 GDVKDAKRG 275
|
Length = 276 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 87.8 bits (217), Expect = 8e-19
Identities = 72/245 (29%), Positives = 117/245 (47%), Gaps = 30/245 (12%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYD---PTK 729
I+ K ++F Y + + + +++ I +K A++G SG GKST + R + P K
Sbjct: 8 IKVKDLSFYYNT---SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVK 64
Query: 730 --GLITLDGHDL--KSLQVKWLRTQIGMVGQEPILFATSILENVLMG------KENATMK 779
G++ G ++ + + LR QIGMV Q P F SI ENV G A +
Sbjct: 65 VEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLD 124
Query: 780 EAV-AACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEP 838
E V +A K A+ + + ++ LSGGQ+QR+ +ARA+ P++LL+DEP
Sbjct: 125 EIVESALKGAALWQEVKD-------KLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEP 177
Query: 839 TSALDSESESIVQQAIDKISVGRTTIVIAHRL---ATVKNANTIVVLDQ---GSVVEIGN 892
SALD + V++ I + T ++ H + V + D+ G +VE G
Sbjct: 178 CSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGV 237
Query: 893 HRQLL 897
Q+
Sbjct: 238 TTQIF 242
|
Length = 259 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 87.7 bits (217), Expect = 8e-19
Identities = 67/222 (30%), Positives = 106/222 (47%), Gaps = 32/222 (14%)
Query: 691 LRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGL-----ITLDGHDLKSLQVK 745
L+++NL IP ++ A++G SG GKST + + + +G ++ +V
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87
Query: 746 W--LRTQIGMVGQEPILFATSILENVLMG------KENATMKEAVAACKAASAHSFISEL 797
LR IGMV Q+ F SI +NV G K ++E V K+ + E
Sbjct: 88 LVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVE--KSLKDVALWDE- 144
Query: 798 PLGYDTQVGDRGTQ----LSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQA 853
V DR LSGGQ+QR+ +ARA+ +P +LL+DEPTSALD S +++
Sbjct: 145 -------VKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEEL 197
Query: 854 IDKISVGRTTIVIAHRL---ATVKNANTIVVLDQGSVVEIGN 892
I K+ T +++ H + A V + + G +VE +
Sbjct: 198 ILKLKEKYTIVIVTHNMQQAARVSDQTAFFYM--GELVECND 237
|
Length = 259 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 87.4 bits (216), Expect = 8e-19
Identities = 57/187 (30%), Positives = 93/187 (49%), Gaps = 7/187 (3%)
Query: 691 LRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGL-----ITLDGHDLKS--LQ 743
L ++N+ I + AL+G SG GKST + R D +G+ + +G ++ S
Sbjct: 23 LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82
Query: 744 VKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDT 803
+ LR +IGMV Q P F SI +N+ G + K+ + S L
Sbjct: 83 ILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKD 142
Query: 804 QVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTT 863
++ LSGGQ+QR+ +AR + +P ++L+DEPTSALD S +++ I + T
Sbjct: 143 KLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTI 202
Query: 864 IVIAHRL 870
I++ H +
Sbjct: 203 IIVTHNM 209
|
Length = 254 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 87.2 bits (217), Expect = 9e-19
Identities = 65/222 (29%), Positives = 112/222 (50%), Gaps = 30/222 (13%)
Query: 1329 VTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWL 1388
+T + D L+V+ G +V L+G +G+GK+T+ LI FY P+ G V+ G D+
Sbjct: 17 LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDI----TGLP 72
Query: 1389 RKQTALVG-----QEPALFAG-TIRDNIALG-----------NPKASWAEIEEAAEEAY- 1430
+ A +G Q LF G T+ +N+A+G + E EA E A
Sbjct: 73 PHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARE 132
Query: 1431 IHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKH 1490
+ +F+ L + + G LS GQ++R+ IARA+ ++LLLDE ++ L+ E +
Sbjct: 133 LLEFV-GLGELADRPAGN----LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEE 187
Query: 1491 VQDALRKVSKR-ATTIV-VAHRLSTIRE-ANMIAVVRDGAVV 1529
+ + +R++ R TI+ + H + + A+ I V+ G V+
Sbjct: 188 LAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVI 229
|
Length = 250 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 93.1 bits (231), Expect = 9e-19
Identities = 64/223 (28%), Positives = 112/223 (50%), Gaps = 19/223 (8%)
Query: 677 GVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDG 736
G+ F+ S T +L++++ + + LA+ G++G GKS++ +I +P++G I G
Sbjct: 428 GLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG 487
Query: 737 HDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMG--KENATMKEAVAACKAASAHSFI 794
S Q W+ M G +I +N++ G + + AC+ I
Sbjct: 488 RISFSPQTSWI-----MPG--------TIKDNIIFGLSYDEYRYTSVIKACQLEED---I 531
Query: 795 SELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESE-SIVQQA 853
+ P T +G+ G LSGGQ+ RI+LARA+ KD + LLD P + LD +E I +
Sbjct: 532 ALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESC 591
Query: 854 IDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQL 896
+ K+ +T I++ +L +K A+ I++L +G G +L
Sbjct: 592 LCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSEL 634
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 86.2 bits (214), Expect = 9e-19
Identities = 53/223 (23%), Positives = 104/223 (46%), Gaps = 17/223 (7%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
+E + VT + L ++ + + L+G +G GK+T +I P G +
Sbjct: 1 LEVENVTKRFG---RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEV 57
Query: 733 TLDGHDLKSLQVKWLRTQIGMVGQEPILF-ATSILENVLMGKENATMKEAVAACKAASAH 791
DG L R +IG + +E L+ +++ ++ + +K+ A
Sbjct: 58 LFDGKPLDIAA----RNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEAR---RRID 110
Query: 792 SFISELPLG-YDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIV 850
++ L L Y + R +LS G +Q++ A+I DP +L+LDEP S LD + ++
Sbjct: 111 EWLERLELSEYANK---RVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELL 167
Query: 851 QQAIDKI-SVGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIG 891
+ I ++ G+T I+ H++ V+ + +++L++G V G
Sbjct: 168 KDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 86.3 bits (215), Expect = 1e-18
Identities = 56/207 (27%), Positives = 95/207 (45%), Gaps = 30/207 (14%)
Query: 1329 VTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDL-----REI 1383
+ L D V+ G + L+G +G+GK+T+ LI F P G V+ +G D+ EI
Sbjct: 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEI 72
Query: 1384 NVKWLRKQTALVGQEPALFAG-TIRDNIALG------------NPKASWAEIEEAAEEAY 1430
R Q P LF T+ +N+ + + E E AEE
Sbjct: 73 A----RLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEEL- 127
Query: 1431 IHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKH 1490
+ + L + GE LS GQ++R+ IARA+ ++LLLDE ++ L+ E +
Sbjct: 128 LERV--GLADLADRPAGE----LSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEE 181
Query: 1491 VQDALRKVSKRATTIV-VAHRLSTIRE 1516
+ + +R++ +R T++ V H + +
Sbjct: 182 LAELIRELRERGITVLLVEHDMDVVMS 208
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 87.6 bits (217), Expect = 1e-18
Identities = 70/301 (23%), Positives = 139/301 (46%), Gaps = 33/301 (10%)
Query: 671 GKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKG 730
G++ K +T Y + +L +++ I + + L+G +G GKST+ + R + T+G
Sbjct: 1 GQMTVKDLTAKY-TEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEG 58
Query: 731 LITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASA 790
I +DG S+ ++ R G++ Q+ +F+ + +N L + +E +
Sbjct: 59 DIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKN-LDPYGKWSDEEIWKVAEEVGL 117
Query: 791 HSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIV 850
S I + P D + D G LS G KQ + LAR+++ +ILLLDEP++ LD + ++
Sbjct: 118 KSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVI 177
Query: 851 QQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLERGGAYHDLVKLA 910
++ + + T I+ HR+ + +V+++ V RQ Y + KL
Sbjct: 178 RKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKV------RQ-------YDSIQKLL 224
Query: 911 SEAVSQPQSKQKDAKRGIEFSIYEKSVIEVSRSRYANEVSKSKYFKSMQAEIQTVEEEQQ 970
+E S +++++ R + + SK + + +IQ ++EE +
Sbjct: 225 NEK-----------------SHFKQAISPSDRLKLFPRRNSSKSKRKPRPQIQALQEETE 267
Query: 971 K 971
+
Sbjct: 268 E 268
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 84.0 bits (209), Expect = 1e-18
Identities = 54/219 (24%), Positives = 89/219 (40%), Gaps = 61/219 (27%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
+E +G+T + L ++L + + AL+G +G GKST+ ++ Y P G I
Sbjct: 1 LELRGITKRFGG---VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEI 57
Query: 733 TLDGHDLKSLQVK-WLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAH 791
+DG ++ + R I MV Q
Sbjct: 58 LVDGKEVSFASPRDARRAGIAMVYQ----------------------------------- 82
Query: 792 SFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSAL-DSESESIV 850
L +G ++Q + +ARA+ ++ R+L+LDEPT+AL +E E +
Sbjct: 83 -----LSVG---------------ERQMVEIARALARNARLLILDEPTAALTPAEVERLF 122
Query: 851 QQAIDKISVGRTTIVIAHRLATVKN-ANTIVVLDQGSVV 888
+ + G I I+HRL V A+ + VL G VV
Sbjct: 123 KVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVV 161
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 89.0 bits (221), Expect = 1e-18
Identities = 61/253 (24%), Positives = 118/253 (46%), Gaps = 15/253 (5%)
Query: 676 KGVTFAYPSRPETVI--LRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLIT 733
KG + R E I ++ ++ IP + + +G +G GKST ++ PT G +
Sbjct: 23 KGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVR 82
Query: 734 LDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHS- 792
++G D + ++LR IG+V + L L ++ + + +
Sbjct: 83 VNGKDPFRRREEYLR-SIGLV-----MGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAER 136
Query: 793 --FISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIV 850
F++E+ L + + +LS GQ+ R LA A++ P++L LDEPT LD +++ +
Sbjct: 137 LDFLTEI-LDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANI 195
Query: 851 QQAIDKISVGR-TTIVIA-HRLATV-KNANTIVVLDQGSVVEIGNHRQLLERGGAYHDLV 907
++ + + + R T+++ H + + ++++DQG +V G QL E+ G Y +
Sbjct: 196 REFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQFGPYKEFS 255
Query: 908 KLASEAVSQPQSK 920
+A S Q
Sbjct: 256 VELKQAKSLSQLA 268
|
Length = 325 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 88.2 bits (219), Expect = 1e-18
Identities = 65/257 (25%), Positives = 121/257 (47%), Gaps = 39/257 (15%)
Query: 1314 IELKMVTFTYPSRP--EVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQG 1371
I++K + + + E+ L + +++ G +A++G +GSGK+T I + P+ G
Sbjct: 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTG 62
Query: 1372 -----------------------KVMIEGVDLREI-NVKWLRKQTALVGQ--EPALFAGT 1405
K++I+ ++I +K +R++ +V Q E LF T
Sbjct: 63 TIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQT 122
Query: 1406 IRDNIALGNPKASWAEIEEAAEEA--YIHKFISSLPQGYETQVGESGVQLSGGQKQRIAI 1463
I +I G P + EEA + A YI + L + Y + S +LSGGQK+R+A+
Sbjct: 123 IEKDIIFG-PVSMGVSKEEAKKRAAKYIE--LVGLDESY---LQRSPFELSGGQKRRVAL 176
Query: 1464 ARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIV-VAHRLSTIRE-ANMIA 1521
A + L+ DE ++ LD + K + + ++K+ TI+ V H L + E
Sbjct: 177 AGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTI 236
Query: 1522 VVRDGAVVEYG-SHETL 1537
+DG +++ G +++ L
Sbjct: 237 FFKDGKIIKDGDTYDIL 253
|
Length = 305 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 87.4 bits (216), Expect = 1e-18
Identities = 69/229 (30%), Positives = 114/229 (49%), Gaps = 28/229 (12%)
Query: 691 LRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGL-----ITLDGHDL--KSLQ 743
+R ++ I ++ +G SG GKSTV + R D KG + G D+ K +
Sbjct: 24 VRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVD 83
Query: 744 VKWLRTQIGMVGQEPILFATSILENVLMG-KENATMKEAVAACKAASAHSFISELPLGYD 802
+R IGMV Q+P F+ SI +NV G + N + K A + + +
Sbjct: 84 PVVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWD------ 137
Query: 803 TQVGDR----GTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKIS 858
+V D+ G LSGGQ+QR+ +ARA+ +P +LLLDEP SALD + V++ + ++
Sbjct: 138 -EVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK 196
Query: 859 VGRTTIVIAHRL-ATVKNANTI----VVLDQGS----VVEIGNHRQLLE 898
T ++ H + ++ A+T V + QG+ +VE+G Q+ +
Sbjct: 197 KDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQIFQ 245
|
Length = 261 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 87.0 bits (216), Expect = 1e-18
Identities = 60/229 (26%), Positives = 98/229 (42%), Gaps = 46/229 (20%)
Query: 687 ETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKW 746
IL L+L +P+ K AL+G +G GKST+ R P G + L + L +
Sbjct: 14 TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQ 73
Query: 747 LRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKA------------------- 787
L ++ ++L + E T++E VA ++
Sbjct: 74 LARRL------------ALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQ 121
Query: 788 ASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALD---- 843
A + I+ L R T LSGGQ+QR LA + +D ++LLDEPT+ LD
Sbjct: 122 AMEQTRINHL-------ADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQ 174
Query: 844 SESESIVQQAIDKISVGRTTIVIAHRL-ATVKNANTIVVLDQGSVVEIG 891
E ++++ + G+T + + H L + + +VVL G V+ G
Sbjct: 175 VELMRLMRELNTQ---GKTVVTVLHDLNQASRYCDHLVVLANGHVMAQG 220
|
Length = 255 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 86.6 bits (214), Expect = 2e-18
Identities = 63/218 (28%), Positives = 112/218 (51%), Gaps = 9/218 (4%)
Query: 1332 LKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPN-----QGKVMIEGVDLREINVK 1386
+K+ L V+ G++ AL+G SG GK+T + I R +D G+++++G D+ V
Sbjct: 20 VKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVD 79
Query: 1387 --WLRKQTALVGQEPALFAG-TIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYE 1443
+R++ +V Q+P F ++ DN+ G A + + E A ++L +
Sbjct: 80 PVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVK 139
Query: 1444 TQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRAT 1503
++ LSGGQ+QR+ IARA+ +LL+DE +SALD S ++D + + K T
Sbjct: 140 DRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTT 199
Query: 1504 TIVVAHRL-STIREANMIAVVRDGAVVEYGSHETLLAS 1540
I+V H + R ++ + G +VE+G + L +
Sbjct: 200 IIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLFTN 237
|
Length = 252 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 85.8 bits (213), Expect = 2e-18
Identities = 59/188 (31%), Positives = 97/188 (51%), Gaps = 16/188 (8%)
Query: 1331 VLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLR---EINVKW 1387
VL D L++ G +V L G SGSGK+T++ LI +G + + G +L E +
Sbjct: 20 VLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQ 79
Query: 1388 LRKQTALVGQEPALFAG-TIRDNIALG---NPKASWAEIEEAAEEAYIHKFISSLPQGYE 1443
LR+ + Q L T R N+ + P S+ E E A + ++ G
Sbjct: 80 LRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARA-----MLEAV--GLG 132
Query: 1444 TQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSK-RA 1502
+ LSGGQKQR+AIARA++ +++L DE ++ALD +S + V + ++K+++ +
Sbjct: 133 DHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQG 192
Query: 1503 TTIV-VAH 1509
TI+ V H
Sbjct: 193 CTILIVTH 200
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 86.8 bits (215), Expect = 2e-18
Identities = 59/192 (30%), Positives = 99/192 (51%), Gaps = 19/192 (9%)
Query: 691 LRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYD--PT---KGLITLDGHDLKSLQVK 745
++++ L IP ++ A +G SG GKST+ R D P +G +T G +L + V
Sbjct: 26 VKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVD 85
Query: 746 --WLRTQIGMVGQEPILFATSILENVLMGKE----NATMKEAVA-ACKAASAHSFISELP 798
+R +IGMV Q+P F SI +N+ G M E V + + A+ + +
Sbjct: 86 PVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKD-- 143
Query: 799 LGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKIS 858
++ G LSGGQ+QR+ +ARA+ P ++L+DEP SALD S +++ + ++
Sbjct: 144 -----KLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELK 198
Query: 859 VGRTTIVIAHRL 870
T I++ H +
Sbjct: 199 EQYTIIIVTHNM 210
|
Length = 264 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 87.0 bits (215), Expect = 2e-18
Identities = 67/229 (29%), Positives = 115/229 (50%), Gaps = 11/229 (4%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
I + V+++YP T L ++NLVI + + ++G +G GKST+ + P KG +
Sbjct: 2 IRLENVSYSYPD--GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKV 59
Query: 733 TLDGHDLKSL-QVKWLRTQIGMVGQEP--ILFATSILENVLMGKENATMKEAVAACKAAS 789
+ G D +++ +R +G+V Q P ++ E++ G EN + +
Sbjct: 60 LVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDR 119
Query: 790 AHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESI 849
A ++E+ L + LSGGQ Q +ALA + +P L+ DE TS LD +S
Sbjct: 120 A---LAEIGLEKYRHRSPK--TLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIA 174
Query: 850 VQQAIDKI-SVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLL 897
V + I K+ G+T + I H L + +A+ I+V+D+G +V G +L
Sbjct: 175 VLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVL 223
|
Length = 274 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 88.6 bits (220), Expect = 2e-18
Identities = 68/209 (32%), Positives = 113/209 (54%), Gaps = 9/209 (4%)
Query: 688 TVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWL 747
T +L ++L IPS + +AL+G SG GK+T+ +I T G I G D+ L +
Sbjct: 15 TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHAR-- 72
Query: 748 RTQIGMVGQEPILFA-TSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVG 806
++G V Q LF ++ +N+ G +E A AA L + +
Sbjct: 73 DRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNA--AAIKAKVTQLLEMVQLAHLA 130
Query: 807 DR-GTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKI--SVGRTT 863
DR QLSGGQKQR+ALARA+ +P+ILLLDEP ALD++ +++ + ++ + T+
Sbjct: 131 DRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTS 190
Query: 864 IVIAH-RLATVKNANTIVVLDQGSVVEIG 891
+ + H + ++ A+ +VV+ QG++ + G
Sbjct: 191 VFVTHDQEEAMEVADRVVVMSQGNIEQAG 219
|
Length = 353 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 88.7 bits (220), Expect = 2e-18
Identities = 65/228 (28%), Positives = 113/228 (49%), Gaps = 21/228 (9%)
Query: 1337 LKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEG----VDLREINVKWLR--- 1389
L ++ G + L+G SGSGKST++ + ++G V+++ VD+ + LR
Sbjct: 45 LDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATLRRLR 104
Query: 1390 -KQTALVGQEPALFAG-TIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVG 1447
+ ++V Q+ AL T+ +N+A G + E + + L Q + + G
Sbjct: 105 THRVSMVFQQFALLPWRTVEENVAFGLEMQGMPK-AERRKRVDEQLELVGLAQWADRKPG 163
Query: 1448 ESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDAL----RKVSKRAT 1503
E LSGG +QR+ +ARA + +LL+DE SALD +QD L K+ K T
Sbjct: 164 E----LSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDELLELQSKLKK--T 217
Query: 1504 TIVVAHRL-STIREANMIAVVRDGAVVEYGSHETLLASHLNGVYASLV 1550
+ V+H L ++ N IA++ G ++++G+ E ++ + N A V
Sbjct: 218 IVFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDYVADFV 265
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 86.1 bits (214), Expect = 2e-18
Identities = 66/254 (25%), Positives = 107/254 (42%), Gaps = 30/254 (11%)
Query: 1307 ERSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFY 1366
E+S L LK + E LKD ++ G V ++G +G+GKST++ LI Y
Sbjct: 18 EKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIY 77
Query: 1367 DPNQGKVMIEG--VDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKASWAEIEE 1424
P GKV + G L E+ + L G+E G I LG + EI+E
Sbjct: 78 KPTSGKVKVTGKVAPLIELGAGF---DPELTGRENIYLRGLI-----LGLTR---KEIDE 126
Query: 1425 AAEE----AYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEAS 1480
+E A + FI + Y S G R+A + A +LLLDE
Sbjct: 127 KVDEIIEFAELGDFIDQPVKTY-----------SSGMYARLAFSVATHVEPDILLLDEVL 175
Query: 1481 SALDLESEKHVQDALRKVSKRATTIV-VAHRLSTIREA-NMIAVVRDGAVVEYGSHETLL 1538
+ D ++ + L ++ ++ TIV V+H L I++ + + G + GS E ++
Sbjct: 176 AVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVI 235
Query: 1539 ASHLNGVYASLVRA 1552
++ + L
Sbjct: 236 PAYEEDLADRLSLN 249
|
Length = 249 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 85.6 bits (212), Expect = 2e-18
Identities = 57/168 (33%), Positives = 83/168 (49%), Gaps = 22/168 (13%)
Query: 690 ILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSL---QVKW 746
IL + LV+ +T+AL+G SG GKST+ A++ D + G ++L G L +
Sbjct: 25 ILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84
Query: 747 LRTQ-IGMVGQEPILFAT-SILENV-----LMGK-ENATMKEAVAACKAASAHSFISELP 798
LR + +G V Q +L T + LENV L G+ + A A + + LP
Sbjct: 85 LRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLP 144
Query: 799 LGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSES 846
QLSGG++QR+ALARA P +L DEPT LD ++
Sbjct: 145 -----------AQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQT 181
|
Length = 228 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 89.1 bits (221), Expect = 2e-18
Identities = 66/225 (29%), Positives = 114/225 (50%), Gaps = 16/225 (7%)
Query: 1325 SRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREIN 1384
+ TVL L V+ GS+V LVG +G+GK+T++ I P G V++ G D+ ++
Sbjct: 12 EFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALS 71
Query: 1385 VKWLRKQTALVGQEPAL-FAGTIRDNIALG-NPKAS----WAEIEEAAEEAYIHKFISSL 1438
+ ++ A V Q+ +L F +R + +G P S W E + AA E ++
Sbjct: 72 ARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVE-------RAM 124
Query: 1439 PQGYETQVGESGV-QLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRK 1497
+ Q + V LSGG++QR+ +ARA+ + + VLLLDE +++LD+ + + +R+
Sbjct: 125 ERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRR 184
Query: 1498 VSKRATTIVVA-HRLS-TIREANMIAVVRDGAVVEYGSHETLLAS 1540
+ T V A H L R + + ++ DG V G +L +
Sbjct: 185 LVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTA 229
|
Length = 402 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 84.6 bits (210), Expect = 3e-18
Identities = 54/227 (23%), Positives = 110/227 (48%), Gaps = 24/227 (10%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
++L+ +T Y + L L + G M L+G +G+GK+T++ ++ P+ G +
Sbjct: 1 LQLENLTKRYGKK---RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTI 56
Query: 1374 MIEGVDLREINVKWLRKQTALVGQEPALFAG-TIRDNIA----LG--NPKASWAEIEEAA 1426
I+G D+ + + LR++ + QE ++ T+R+ + L K A ++E
Sbjct: 57 RIDGQDVLK-QPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVL 115
Query: 1427 EEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLE 1486
E +L + ++G LSGG ++R+ IA+A++ +L++DE ++ LD E
Sbjct: 116 ELV-------NLGDRAKKKIG----SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPE 164
Query: 1487 SEKHVQDALRKVSKRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYG 1532
++ L ++ + I+ H + + N +AV+ G +V G
Sbjct: 165 ERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 86.6 bits (214), Expect = 3e-18
Identities = 63/194 (32%), Positives = 98/194 (50%), Gaps = 23/194 (11%)
Query: 691 LRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDG---------HDLKS 741
L ++L IP+ K +A +G SG GKST+ R D G ++G +D +
Sbjct: 36 LVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPG-AKVEGRLLYRDRNIYDSQI 94
Query: 742 LQVKWLRTQIGMVGQEPILFATSILENVLMGKE----NATMKEAVA-ACKAASAHSFISE 796
VK LR Q+GMV Q P F SI EN+ + E V + + A+ + +
Sbjct: 95 NSVK-LRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKD 153
Query: 797 LPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDK 856
++ ++GT LSGGQ+QR+ +ARA+ P +LL+DEP SALD S V++ +
Sbjct: 154 -------KLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLE 206
Query: 857 ISVGRTTIVIAHRL 870
+ T I++ H +
Sbjct: 207 LKEQYTIIMVTHNM 220
|
Length = 274 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 86.2 bits (213), Expect = 3e-18
Identities = 65/219 (29%), Positives = 112/219 (51%), Gaps = 16/219 (7%)
Query: 1332 LKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYD-----PNQGKVMIEGVDLREIN-- 1384
L + +K+ S+ AL+G SG GKST + + R D +G V+ EG ++ N
Sbjct: 23 LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82
Query: 1385 VKWLRKQTALVGQEPALFAGTIRDNIALGNPK----ASWAEIEEAAEEAYIHKFISSLPQ 1440
+ LR++ +V Q P F +I DNI+ G PK +++E E++ S+L
Sbjct: 83 ILELRRKIGMVFQTPNPFLMSIYDNISYG-PKIHGTKDKKKLDEIVEQSLKK---SALWN 138
Query: 1441 GYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSK 1500
+ ++ + + LSGGQ+QR+ IAR + V+L+DE +SALD S +++ + + +
Sbjct: 139 EVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE 198
Query: 1501 RATTIVVAHRLSTI-REANMIAVVRDGAVVEYGSHETLL 1538
T I+V H + R ++ A +G + E S + L
Sbjct: 199 SYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELF 237
|
Length = 254 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 86.5 bits (214), Expect = 3e-18
Identities = 79/259 (30%), Positives = 123/259 (47%), Gaps = 41/259 (15%)
Query: 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGK 1372
GI + VT T+ R T L+D V GGS+ ALVG +GSGKST+ + F GK
Sbjct: 6 GIVVNDVTVTW--RNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGK 63
Query: 1373 VMIEGVDLREINVKWLRKQ-TALVGQEPAL---FAGTIRDNIALGN---------PKASW 1419
+ I G R + L+K A V Q + F + D + +G K
Sbjct: 64 ISILGQPTR----QALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRD 119
Query: 1420 AEIEEAAEE-----AYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVL 1474
+I AA + H+ Q+GE LSGGQK+R+ +ARAI + +V+
Sbjct: 120 RQIVTAALARVDMVEFRHR-----------QIGE----LSGGQKKRVFLARAIAQQGQVI 164
Query: 1475 LLDEASSALDLESEKHVQDALRKVSKRATTIVVA-HRLSTIREANMIAVVRDGAVVEYGS 1533
LLDE + +D+++E + LR++ T++V+ H L ++ E V+ G V+ G
Sbjct: 165 LLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMVKGTVLASGP 224
Query: 1534 HE-TLLASHLNGVYASLVR 1551
E T A +L ++ ++R
Sbjct: 225 TETTFTAENLELAFSGVLR 243
|
Length = 272 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 89.3 bits (222), Expect = 4e-18
Identities = 67/249 (26%), Positives = 109/249 (43%), Gaps = 41/249 (16%)
Query: 1319 VTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPN-----QGKV 1373
V F V +K ++ G +ALVG SGSGKS I G +
Sbjct: 14 VAFHQEGG-TVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSI 72
Query: 1374 MIEGVDLREINVKWLRK----QTALVGQEP-----ALFAGTIRDNIALG-------NPKA 1417
+ +G DL + + LR + ++ QEP L TI +A + A
Sbjct: 73 LFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLH--TIGKQLAEVLRLHRGLSRAA 130
Query: 1418 SWAEIEEAAEEAYI---HKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVL 1474
+ A E E I K + + P +LSGGQ+QR+ IA A+ +L
Sbjct: 131 ARARALELLELVGIPEPEKRLDAYPH-----------ELSGGQRQRVMIAMALANEPDLL 179
Query: 1475 LLDEASSALDLESEKHVQDALRKVSKR--ATTIVVAHRLSTIRE-ANMIAVVRDGAVVEY 1531
+ DE ++ALD+ + + D L+++ + + H L +R+ A+ + V++ G +VE
Sbjct: 180 IADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVET 239
Query: 1532 GSHETLLAS 1540
G+ ETL A+
Sbjct: 240 GTTETLFAA 248
|
Length = 534 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 86.0 bits (213), Expect = 4e-18
Identities = 69/228 (30%), Positives = 109/228 (47%), Gaps = 14/228 (6%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
IE + + ++Y L + S +A++G +G+GKST+ P G V
Sbjct: 4 IETRDLCYSY--SGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSV 61
Query: 1374 MIEGVDLREINVKWLRKQTALVGQEP--ALFAGTIRDNIALGNPKASWAEIEEAAEEAYI 1431
+I G + + N++ +RK LV Q P +F+ T+ +IA G EE
Sbjct: 62 LIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLG------LDEETVA 115
Query: 1432 HKFISSLPQ-GYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKH 1490
H+ S+L G E LSGG+K+R+AIA I +VL+LDE ++ LD + K
Sbjct: 116 HRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKE 175
Query: 1491 VQDALRKVSKR--ATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHE 1535
+ D L + + T I H+L + E A+ I V+ G +V YG+ E
Sbjct: 176 LIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVE 223
|
Length = 277 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 90.6 bits (225), Expect = 5e-18
Identities = 72/293 (24%), Positives = 131/293 (44%), Gaps = 36/293 (12%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGK-STVFALIERFYDPTKGL 731
I K F++ S+ E L ++NL +P +A+VG++G GK S + A++ +
Sbjct: 615 ISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDAS 674
Query: 732 ITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAH 791
+ + G QV W+ F ++ +N+L G + A A H
Sbjct: 675 VVIRGTVAYVPQVSWI-------------FNATVRDNILFGSPFDPERYERAIDVTALQH 721
Query: 792 SFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQ 851
+ LP G T++G+RG +SGGQKQR+++ARA+ + + + D+P SALD+ + +
Sbjct: 722 D-LDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAH---VGR 777
Query: 852 QAIDKISV----GRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNH----------RQLL 897
Q DK G+T +++ ++L + + I+++ +G + E G + ++L+
Sbjct: 778 QVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSNNGPLFQKLM 837
Query: 898 ERGGAYHDLV-KLASEAVSQPQSKQKDAKRGIEFSIYEKSVIEVSRSRYANEV 949
E G + V + E Q SK K +S+ V
Sbjct: 838 ENAGKMEEYVEENGEEEDDQTSSKPVANGNANNLK---KDSSSKKKSKEGKSV 887
|
Length = 1622 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 84.5 bits (210), Expect = 5e-18
Identities = 58/223 (26%), Positives = 104/223 (46%), Gaps = 29/223 (13%)
Query: 690 ILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQV-KWLR 748
++ ++L + + + L+G +G GK+T F +I P G I LDG D+ L + K R
Sbjct: 15 VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRAR 74
Query: 749 TQIGMVGQEPILFAT-SILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGD 807
IG + QE +F ++ EN+L E + + K + E + T +
Sbjct: 75 LGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKL---EELLEEFHI---THLRK 128
Query: 808 R-GTQLSGGQKQRIALARAMIKDPRILLLDEPTSALD----SESESIVQQAIDK-ISV-- 859
+ LSGG+++R+ +ARA+ +P+ LLLDEP + +D + + I++ D+ I V
Sbjct: 129 SKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLI 188
Query: 860 ----GRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLE 898
R T+ I R ++ +G V+ G ++
Sbjct: 189 TDHNVRETLSITDR---------AYIIYEGKVLAEGTPEEIAA 222
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 89.4 bits (222), Expect = 6e-18
Identities = 71/235 (30%), Positives = 111/235 (47%), Gaps = 36/235 (15%)
Query: 673 IEFKGVTFAYPSRPETV-ILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKG- 730
+E K + +YPS E V +L+ ++L I + + +A+VG SG GKST+ ++ PT G
Sbjct: 5 LELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGT 64
Query: 731 -------LITLDGHDLKSLQVKWLRTQIGMVGQE----PILFATSILE--NVLMGKENAT 777
+ TLD L L+ R G + Q L A +E V G E
Sbjct: 65 YRVAGQDVATLDADALAQLR----REHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQ 120
Query: 778 MKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDE 837
A + L L +V + +QLSGGQ+QR+++ARA++ +++L DE
Sbjct: 121 RLL--------RAQELLQRLGLE--DRVEYQPSQLSGGQQQRVSIARALMNGGQVILADE 170
Query: 838 PTSALDSESE----SIVQQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVV 888
PT ALDS S +I+ Q D+ G T I++ H A ++ + G +V
Sbjct: 171 PTGALDSHSGEEVMAILHQLRDR---GHTVIIVTHDPQVAAQAERVIEIRDGEIV 222
|
Length = 648 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 84.1 bits (209), Expect = 6e-18
Identities = 66/244 (27%), Positives = 102/244 (41%), Gaps = 31/244 (12%)
Query: 1298 IDNV-KGRKLERSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKS 1356
++NV K + ++ + E LKD +V G + L+G +G+GKS
Sbjct: 3 LENVSKSYPTYKGGSSSLKKLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKS 62
Query: 1357 TVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTAL-VGQEPALFAGTIRDNIALGNP 1415
T++ L+ Y P+ G V + G V L L G P L T R+NI L
Sbjct: 63 TLLRLLAGIYPPDSGTVTVRG------RVSSL---LGLGGGFNPEL---TGRENIYL--- 107
Query: 1416 KASW-----AEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKG 1470
EI+E +E I +F S L + V S G K R+A A A
Sbjct: 108 NGRLLGLSRKEIDEKIDE--IIEF-SELGDFIDLPVKT----YSSGMKARLAFAIATALE 160
Query: 1471 SRVLLLDEASSALDLESEKHVQDALR-KVSKRATTIVVAHRLSTIRE-ANMIAVVRDGAV 1528
+LL+DE + D ++ Q LR + + T I+V+H S+I+ + V+ G +
Sbjct: 161 PDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKI 220
Query: 1529 VEYG 1532
G
Sbjct: 221 RFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 85.9 bits (212), Expect = 6e-18
Identities = 64/230 (27%), Positives = 122/230 (53%), Gaps = 16/230 (6%)
Query: 673 IEFKGVTFAY-PSRP-ETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKG 730
I+F+ V + Y P+ P + L ++L + AL+G +G GKST+ + PT+G
Sbjct: 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEG 61
Query: 731 LITLDG----HDLKSLQVKWLRTQIGMVGQEP--ILFATSILENVLMGKENATMKEAVAA 784
+T+ K ++K +R ++G+V Q P LF ++L++V G +N + + A
Sbjct: 62 KVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAE 121
Query: 785 CKAASAHSFISELPLGYDTQVGDRGT-QLSGGQKQRIALARAMIKDPRILLLDEPTSALD 843
AA + G + ++ +LSGGQ +R+A+A + +P +L+LDEPT+ LD
Sbjct: 122 KIAAEKLEMV-----GLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLD 176
Query: 844 SESESIVQQAIDKI-SVGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIG 891
++ + Q + I G+T +++ H + V + A+ + +L++G ++ G
Sbjct: 177 PKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCG 226
|
Length = 288 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 85.1 bits (211), Expect = 6e-18
Identities = 66/233 (28%), Positives = 100/233 (42%), Gaps = 50/233 (21%)
Query: 1326 RPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINV 1385
TVL + L +K G VAL+G SG GKST+ L+ P+QG V G L
Sbjct: 22 HQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPL----- 76
Query: 1386 KWLRKQTALVGQEPALFAGTIR----DNIALGNPKASWAEI-----------EEAAEEAY 1430
L + F I+ D+I+ NP+ + EI ++A A
Sbjct: 77 ------AKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLAR 130
Query: 1431 IHKFI----------SSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEAS 1480
+ + P QLSGGQ QR+ +ARA+ ++L+LDEA
Sbjct: 131 ASEMLRAVDLDDSVLDKRPP-----------QLSGGQLQRVCLARALAVEPKLLILDEAV 179
Query: 1481 SALDLESEKHVQDALRKVSKRATT--IVVAHRLSTI-REANMIAVVRDGAVVE 1530
S LDL + V L+K+ ++ T + + H L + R + V+ +G +VE
Sbjct: 180 SNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVE 232
|
Length = 268 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 85.1 bits (211), Expect = 7e-18
Identities = 59/194 (30%), Positives = 100/194 (51%), Gaps = 12/194 (6%)
Query: 1328 EVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKW 1387
E L L++ G V ++G +G+GKST++ I P G+++I+GVD+ + +V
Sbjct: 18 EKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAK 77
Query: 1388 LRKQTALVGQEPALFAG-----TIRDNIALGNPKASWAEIEEAAEEAYIHKF---ISSLP 1439
A V Q+P AG TI +N+AL + + A E F ++ L
Sbjct: 78 RANLLARVFQDPL--AGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLG 135
Query: 1440 QGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRK-V 1498
G E ++ + LSGGQ+Q +++ A L ++LLLDE ++ALD ++ + V + K V
Sbjct: 136 LGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIV 195
Query: 1499 SKRA-TTIVVAHRL 1511
+ TT++V H +
Sbjct: 196 EEHKLTTLMVTHNM 209
|
Length = 263 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 83.0 bits (206), Expect = 8e-18
Identities = 53/210 (25%), Positives = 94/210 (44%), Gaps = 44/210 (20%)
Query: 1311 PLGIELKMVTFTYPSRP---EVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLI--QRF 1365
+ + + +T T S P +LK+ K K G + A++G SG+GKST++ + +R
Sbjct: 1 GVTLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRT 60
Query: 1366 YDPNQGKVMIEGVDLREINVKWLRKQTALVGQEPALFAG-TIRDNIALGNPKASWAEIEE 1424
G+V+I G L + + RK V Q+ L T+R+ +
Sbjct: 61 GLGVSGEVLINGRPLDK---RSFRKIIGYVPQDDILHPTLTVRETLM------------- 104
Query: 1425 AAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALD 1484
++ +G LSGG+++R++IA ++ +L LDE +S LD
Sbjct: 105 ----------FAAKLRG-----------LSGGERKRVSIALELVSNPSLLFLDEPTSGLD 143
Query: 1485 LESEKHVQDALRKVSKRATTIVVA-HRLST 1513
S V LR+++ TI+ + H+ S+
Sbjct: 144 SSSALQVMSLLRRLADTGRTIICSIHQPSS 173
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 84.7 bits (210), Expect = 8e-18
Identities = 60/233 (25%), Positives = 108/233 (46%), Gaps = 25/233 (10%)
Query: 1330 TVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLR 1389
+L L ++ G ++A++G +G+GKST++ + P+ G+V + GV L + L
Sbjct: 15 RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELA 74
Query: 1390 KQTALVGQEPAL-FAGTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGE 1448
+ A++ Q +L F T+++ + +G + E E+ I
Sbjct: 75 RHRAVLPQNSSLAFPFTVQEVVQMG--RIPHRSGREPEEDERI-------AAQALAATDL 125
Query: 1449 SGV------QLSGGQKQRIAIAR------AILKGSRVLLLDEASSALDLESEKHVQDALR 1496
SG+ LSGG++QR+ +AR + R L LDE +SALD+ + H R
Sbjct: 126 SGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLAR 185
Query: 1497 KVSKR-ATTIVVAHRLS-TIREANMIAVVRDGAVVEYGS-HETLLASHLNGVY 1546
++++ + V H L+ + A+ I ++ G V+ GS + L L VY
Sbjct: 186 QLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVLTDETLERVY 238
|
Length = 259 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 86.1 bits (213), Expect = 8e-18
Identities = 62/226 (27%), Positives = 109/226 (48%), Gaps = 26/226 (11%)
Query: 687 ETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLD----GHDLKSL 742
E V L +++ +K ++G SG GKST+ G I + G +
Sbjct: 38 ELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNH 97
Query: 743 QV------------KWLRTQIGMVGQEP--ILFATSILENVLMGKENATMKEAVAACKAA 788
++ K LR ++ MV Q P LF +I ++++ G +K++ A A
Sbjct: 98 ELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAK 157
Query: 789 SAHSFISELPLGYDTQVGDRGT-QLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESE 847
+++++ L +R LSGGQK+R+A+A + P IL+ DEPT+ LD + E
Sbjct: 158 F---YLNKMGLDDSYL--ERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGE 212
Query: 848 SIVQQAI-DKISVGRTTIVIAHRLATV-KNANTIVVLDQGSVVEIG 891
+ Q I D + +T VI H + V + A+ ++V+D+G +++ G
Sbjct: 213 HEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTG 258
|
Length = 320 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 84.8 bits (210), Expect = 9e-18
Identities = 70/252 (27%), Positives = 120/252 (47%), Gaps = 41/252 (16%)
Query: 1316 LKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMI 1375
L+ V+F P R T+L L G + L+G +GSGKST++ ++ R P++G++++
Sbjct: 14 LRNVSFRVPGR---TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILL 70
Query: 1376 EGVDLREINVKWLRKQTALVGQE-PALFAGTIRDNIALGNPKASW--------AEIEEAA 1426
+ L + K ++ A + Q+ PA T+R+ +A+G + W A E
Sbjct: 71 DAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIG--RYPWHGALGRFGAADREKV 128
Query: 1427 EEA--------YIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDE 1478
EEA H+ + SL SGG++QR IA + + SR LLLDE
Sbjct: 129 EEAISLVGLKPLAHRLVDSL---------------SGGERQRAWIAMLVAQDSRCLLLDE 173
Query: 1479 ASSALDLESEKHVQDALRKVSKRA--TTIVVAHRLS-TIREANMIAVVRDGAVVEYGSHE 1535
+SALD+ + V + ++S+ T I V H ++ R + + +R G ++ G+
Sbjct: 174 PTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPA 233
Query: 1536 TLLASH-LNGVY 1546
L+ L +Y
Sbjct: 234 ELMRGETLEQIY 245
|
Length = 265 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 89.6 bits (222), Expect = 1e-17
Identities = 76/305 (24%), Positives = 138/305 (45%), Gaps = 30/305 (9%)
Query: 642 AATRVFEIIDRVPEI-DPYNSEGRKLSSVSGKIEFKGVTFAYPSRPETV----------- 689
+ +RVF+ ID E P G+ S IE +PS +
Sbjct: 1171 SVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEA 1230
Query: 690 ---ILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKW 746
+L+ L+ + + + L+G +G GKST+ + + R T+G I +DG S+ ++
Sbjct: 1231 GRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQT 1289
Query: 747 LRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVG 806
R G++ Q+ +F+ + +N L E + +E + S I + P D +
Sbjct: 1290 WRKAFGVIPQKVFIFSGTFRKN-LDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLV 1348
Query: 807 DRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVI 866
D G LS G KQ + LAR+++ +ILLLDEP++ LD + I+++ + + T I+
Sbjct: 1349 DGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILS 1408
Query: 867 AHRLATVKNANTIVVLDQGSVVE------IGNHRQLLERGGAYHDLVKL-------ASEA 913
HR+ + +V++ SV + + N L ++ + D +KL +S+
Sbjct: 1409 EHRVEALLECQQFLVIEGSSVKQYDSIQKLLNETSLFKQAMSAADRLKLFPLHRRNSSKR 1468
Query: 914 VSQPQ 918
QP+
Sbjct: 1469 KPQPK 1473
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 84.6 bits (209), Expect = 1e-17
Identities = 66/226 (29%), Positives = 107/226 (47%), Gaps = 32/226 (14%)
Query: 694 LNLVIPSSKTLALVGTSGGGKSTVFALIERFYD-----PTKGLITLDGHDL--KSLQVKW 746
+++ I AL+G SG GKST I R D ++G I +G ++ ++ V
Sbjct: 40 ISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVN 99
Query: 747 LRTQIGMVGQEPILFATSILENVLMG------KENATMKEAV--AACKAASAHSFISELP 798
LR +IGMV Q+P F SI N+ + + + E V + KAA
Sbjct: 100 LRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAAL--------- 150
Query: 799 LGYDTQVGDR----GTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAI 854
+D +V DR LSGGQ+QR+ +AR + P +LLLDEP SALD S + +++ I
Sbjct: 151 --WD-EVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELI 207
Query: 855 DKISVGRTTIVIAHRL-ATVKNANTIVVLDQGSVVEIGNHRQLLER 899
++ + I++ H + ++ ++ G +VE Q+
Sbjct: 208 TELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIFTS 253
|
Length = 268 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 83.2 bits (206), Expect = 1e-17
Identities = 62/214 (28%), Positives = 111/214 (51%), Gaps = 20/214 (9%)
Query: 1328 EVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREIN--- 1384
+ VLK L + G +VA+VG SGSGKST++ L+ +P G+V+ G L +++
Sbjct: 17 DTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNE 76
Query: 1385 VKWLRKQT-ALVGQEPALFAG-TIRDNIA----LGNPKASWAEIEEAAEEAYIHKFISSL 1438
LR + + Q L T +N+A +G ++EA E AY + + +
Sbjct: 77 RAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKS-----VKEAKERAY--EMLEKV 129
Query: 1439 PQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKV 1498
G E ++ +LSGG++QR+AIARA++ ++L DE + LD + K + D + ++
Sbjct: 130 --GLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLEL 187
Query: 1499 SKRATT--IVVAHRLSTIREANMIAVVRDGAVVE 1530
++ T +VV H L ++ + + ++DG +
Sbjct: 188 NRELNTSFLVVTHDLELAKKLDRVLEMKDGQLFN 221
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 83.6 bits (207), Expect = 1e-17
Identities = 67/226 (29%), Positives = 104/226 (46%), Gaps = 15/226 (6%)
Query: 1314 IELKMVTFTYPS-RPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGK 1372
IE+ ++ T E+++LK L VK G VA+VG SGSGKST++ ++ DP+ G+
Sbjct: 7 IEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGE 66
Query: 1373 VMIEGVDLREIN----VKWLRKQTALVGQEPALFAG-TIRDNIALGNPKASWAEIEEAAE 1427
V + G L +++ + V Q L T +N+AL P E+ +
Sbjct: 67 VRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVAL--P----LELRGESS 120
Query: 1428 EAYIHKFISSLPQ-GYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLE 1486
+ L G ++ QLSGG++QR+A+ARA VL DE + LD
Sbjct: 121 ADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRA 180
Query: 1487 SEKHVQDAL-RKVSKRATTIV-VAHRLSTIREANMIAVVRDGAVVE 1530
+ + D L +R TT+V V H + +R G +VE
Sbjct: 181 TGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVE 226
|
Length = 228 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 86.8 bits (215), Expect = 1e-17
Identities = 62/234 (26%), Positives = 107/234 (45%), Gaps = 38/234 (16%)
Query: 684 SRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQ 743
+T +L ++L + + LVG +G GK+T+ I PT G + + G D+++L
Sbjct: 12 EFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALS 71
Query: 744 VKWLRTQIGMVGQEPIL-FATSILENVLMGK-------------ENATMKEAVAACKAAS 789
+ ++ V Q+ L F + + V MG+ + A ++ A+ A
Sbjct: 72 ARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVA- 130
Query: 790 AHSFISELPLGYDTQVGDRG-TQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESE- 847
Q DR T LSGG++QR+ LARA+ + +LLLDEPT++LD +
Sbjct: 131 --------------QFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQV 176
Query: 848 ---SIVQQAIDKISVGRTTIVIAHRL-ATVKNANTIVVLDQGSVVEIGNHRQLL 897
+V++ +D G+T + H L + + +V+L G V G +L
Sbjct: 177 RTLELVRRLVDD---GKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVL 227
|
Length = 402 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 83.0 bits (205), Expect = 2e-17
Identities = 62/239 (25%), Positives = 115/239 (48%), Gaps = 30/239 (12%)
Query: 1312 LGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQG 1371
+ I+L + Y + L D L G + L+G SG+GKS+++ ++ P G
Sbjct: 1 MSIQLNGINCFYGAH---QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSG 57
Query: 1372 KVMIEG--VDLREI----NVKWLRKQTALVGQEPALFAG-TIRDNI------ALGNPKA- 1417
+ I G D + ++ LR+ +V Q+ L+ T+++N+ LG K
Sbjct: 58 TLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQ 117
Query: 1418 SWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLD 1477
+ A E+ + + + P + LSGGQ+QR+AIARA++ +VLL D
Sbjct: 118 ALARAEKLLKRLRLKPYADRYP-----------LHLSGGQQQRVAIARALMMEPQVLLFD 166
Query: 1478 EASSALDLESEKHVQDALRKVSKRA-TTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSH 1534
E ++ALD E + ++++++ T ++V H + R+ A+ + + +G +VE G
Sbjct: 167 EPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDA 225
|
Length = 242 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 83.5 bits (206), Expect = 2e-17
Identities = 60/220 (27%), Positives = 115/220 (52%), Gaps = 16/220 (7%)
Query: 1332 LKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYD--PN---QGKVMI----EGVDLRE 1382
LK+ + V + AL+G SG GKST + R +D P +G++++ + E
Sbjct: 32 LKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPE 91
Query: 1383 INVKWLRKQTALVGQEPALFAGTIRDNIALG---NPKASWAEIEEAAEEAYIHKFISSLP 1439
++ +R + ++V Q+P F +I +N+A G + +EE E A + ++L
Sbjct: 92 VDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRN---AALW 148
Query: 1440 QGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVS 1499
+ ++G+ LSGGQ+QR+ IARA+ +LL DE +SALD + +++ + +
Sbjct: 149 DEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLK 208
Query: 1500 KRATTIVVAHRL-STIREANMIAVVRDGAVVEYGSHETLL 1538
+ T ++V H + R ++ A + G ++E+G+ +T+
Sbjct: 209 NKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGATDTIF 248
|
Length = 265 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 84.2 bits (208), Expect = 2e-17
Identities = 63/208 (30%), Positives = 108/208 (51%), Gaps = 22/208 (10%)
Query: 1346 ALVGGSGSGKSTVIWLIQRFYD--PN---QGKVMIEGVDL--REINVKWLRKQTALVGQE 1398
A++G SG GKST + I R D P+ G +M +G D+ + + LRK+ +V Q+
Sbjct: 69 AIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQK 128
Query: 1399 PALFAGTIRDNIALG------NPKASWAEI-EEAAEEAYIHKFISSLPQGYETQVGESGV 1451
P F +I DNIA G N K EI E++ +A + +S ++ ++ +
Sbjct: 129 PNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSD-------RLDKNAL 181
Query: 1452 QLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRL 1511
LSGGQ+QR+ +AR + +LLLDE +SALD ++ ++D ++++ T ++V H +
Sbjct: 182 GLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNM 241
Query: 1512 STI-REANMIAVVRDGAVVEYGSHETLL 1538
R ++ +G +VE+ L
Sbjct: 242 QQASRVSDYTMFFYEGVLVEHAPTAQLF 269
|
Length = 286 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 83.3 bits (206), Expect = 2e-17
Identities = 67/227 (29%), Positives = 110/227 (48%), Gaps = 21/227 (9%)
Query: 1328 EVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEG---------- 1377
+TVL V G VAL+G SGSGKST++ ++ ++G++ +EG
Sbjct: 12 ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRN 71
Query: 1378 ---VDLREINVKWLRKQTALVGQEPALFA-GTIRDNIALGNPKASWAEIEEAAEEAYIHK 1433
V E +++ +R + +V Q LF T+ DN+ P + A E +
Sbjct: 72 GPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEA-PVLVLG-MARAEAEKRAME 129
Query: 1434 FISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQD 1493
+ + G + QLSGGQ+QR+AIARA+ +V+L DE +SALD E V +
Sbjct: 130 LLDMV--GLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLN 187
Query: 1494 ALRKVSKRA--TTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETL 1537
+R+++ T ++V H + RE A+ + G +VE G + +
Sbjct: 188 VIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEI 234
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 84.0 bits (207), Expect = 2e-17
Identities = 63/218 (28%), Positives = 108/218 (49%), Gaps = 7/218 (3%)
Query: 1330 TVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDP-----NQGKVMIEGVDLREI- 1383
TVL + ++ +L+G +GSGK+T + + R D G V++ G +
Sbjct: 35 TVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYR 94
Query: 1384 NVKWLRKQTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYE 1443
+V R++ ++ Q P F +I DN+ G +E A L +
Sbjct: 95 DVLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVK 154
Query: 1444 TQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRAT 1503
++ +S +LSGGQ+Q + +AR + VLLLDE +SALD + + +++ +R ++ R T
Sbjct: 155 DRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLT 214
Query: 1504 TIVVAHRLS-TIREANMIAVVRDGAVVEYGSHETLLAS 1540
I+V H L+ R ++ A+ DG +VE G E L +S
Sbjct: 215 VIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSS 252
|
Length = 276 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 82.6 bits (205), Expect = 2e-17
Identities = 61/228 (26%), Positives = 111/228 (48%), Gaps = 35/228 (15%)
Query: 1330 TVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLR 1389
V+ L VK G +V L+G +G+GK+T ++I P+ GK++++G D+ ++ +
Sbjct: 14 KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPM---- 69
Query: 1390 KQTALVG-----QEPALFAG-TIRDNIAL-----GNPKASWAE-IEEAAEEAYIHKFISS 1437
+ A +G QE ++F T+ +NI G K E +EE EE +I S
Sbjct: 70 HKRARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKS 129
Query: 1438 LPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRK 1497
LSGG+++R+ IARA+ + LLLDE + +D + + +Q ++
Sbjct: 130 K-----------ASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKI 178
Query: 1498 VSKRATTIVVA-HRLSTIREANMIA----VVRDGAVVEYGSHETLLAS 1540
+ R +++ H +RE I ++ +G V+ G+ E + A+
Sbjct: 179 LKDRGIGVLITDH---NVRETLSITDRAYIIYEGKVLAEGTPEEIAAN 223
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 85.7 bits (212), Expect = 2e-17
Identities = 72/278 (25%), Positives = 133/278 (47%), Gaps = 34/278 (12%)
Query: 660 NSEGRKLSSVSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFA 719
S +S+V+ I+ GV+ +Y + ++ L+ + S + L+G +G GKST+
Sbjct: 31 ASIPGSMSTVA--IDLAGVSKSYGDKA---VVNGLSFTVASGECFGLLGPNGAGKSTIAR 85
Query: 720 LIERFYDPTKGLITLDGHDLKSLQVKWLRTQIGMVGQ-EPILFATSILENVLMGKENATM 778
+I P G IT+ G + + + + R +IG+V Q + + ++ EN+L+ M
Sbjct: 86 MILGMTSPDAGKITVLGVPVPA-RARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGM 144
Query: 779 KEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEP 838
S F + L D +V D LSGG K+R+ LARA+I DP++L+LDEP
Sbjct: 145 STREIEAVIPSLLEF-ARLESKADARVSD----LSGGMKRRLTLARALINDPQLLILDEP 199
Query: 839 TSALDSESESIVQQAIDK-ISVGRTTIVIAH----------RLATVKNANTIV------V 881
T+ LD + ++ + + ++ G+T ++ H RL ++ I +
Sbjct: 200 TTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHAL 259
Query: 882 LDQG---SVVEI--GNHRQLLERGGAYHDLVKLASEAV 914
+D+ V+EI G+ +L Y ++++ E +
Sbjct: 260 IDEHIGCQVIEIYGGDPHELSSLVKPYARRIEVSGETL 297
|
Length = 340 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 82.9 bits (205), Expect = 2e-17
Identities = 59/195 (30%), Positives = 102/195 (52%), Gaps = 22/195 (11%)
Query: 688 TVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKW- 746
T +L +++ I + +A+VG+SG GKST+ L+ PT G + +G + L
Sbjct: 22 TDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAK 81
Query: 747 --LRTQ-IGMVGQ-EPILFATSILENVLM-----GKENATMKEAVAACKAASAHSFISEL 797
LR Q +G + Q +L + LENV M K+ A + AA
Sbjct: 82 AELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAA--------- 132
Query: 798 PLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKI 857
+G + + R ++LSGG++QR+A+ARA++ +PR++L DEPT LD+ + + Q + ++
Sbjct: 133 -VGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGEL 191
Query: 858 SVGRTT--IVIAHRL 870
+ + T +V+ H L
Sbjct: 192 NRLQGTAFLVVTHDL 206
|
Length = 233 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 83.7 bits (207), Expect = 2e-17
Identities = 63/209 (30%), Positives = 106/209 (50%), Gaps = 10/209 (4%)
Query: 1330 TVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREIN---VK 1386
VL + L ++ G V L+G SG GKST+ L+ P QG V G DL +++ +
Sbjct: 25 PVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRR 84
Query: 1387 WLRKQTALVGQE-PALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQ 1445
R+ LV Q+ P+ + +G P ++E+ ++A I + + + G ++
Sbjct: 85 AFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMV--GLRSE 142
Query: 1446 VGES-GVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATT 1504
+ QLSGGQ QRI IARA+ ++++LDEA S LD+ + + + LRK+ + T
Sbjct: 143 DADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGT 202
Query: 1505 --IVVAHRLSTI-REANMIAVVRDGAVVE 1530
+ + H L + +AV+ G +VE
Sbjct: 203 AYLFITHDLRLVQSFCQRVAVMDKGQIVE 231
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 82.4 bits (204), Expect = 2e-17
Identities = 56/224 (25%), Positives = 108/224 (48%), Gaps = 15/224 (6%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
IE + + Y + +R ++ + + L+G +G GK+T ++ PT G
Sbjct: 1 IEVENLVKKYG---DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRA 57
Query: 733 TLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHS 792
T+ GHD+ + + +R +IG+V Q+ + ++ L G EN + + A
Sbjct: 58 TVAGHDVVR-EPREVRRRIGIVFQDLSV------DDELTGWENLYIHARLYGVPGAERRE 110
Query: 793 FISELPLGYD-TQVGDRGTQ-LSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIV 850
I EL + DR + SGG ++R+ +AR+++ P +L LDEPT LD ++ + V
Sbjct: 111 RIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHV 170
Query: 851 QQAIDKI--SVGRTTIVIAHRLATV-KNANTIVVLDQGSVVEIG 891
+ I+K+ G T ++ H + + + + ++D G ++ G
Sbjct: 171 WEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEG 214
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.5 bits (205), Expect = 3e-17
Identities = 66/225 (29%), Positives = 114/225 (50%), Gaps = 26/225 (11%)
Query: 1328 EVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLR-----E 1382
++ L+ L+V+ G +VAL+G +G+GK+T++ I P G+++ +G D+ E
Sbjct: 15 KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHE 74
Query: 1383 INVKWLRKQTALVGQEPALFAG-TIRDNIALG-NPKASWAEIEEAAEEAYIHKFISSL-P 1439
R A V + +F T+ +N+ LG + E EE Y L P
Sbjct: 75 RA----RLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVY------ELFP 124
Query: 1440 QGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVS 1499
+ E + +G LSGG++Q +AIARA++ ++LLLDE S L + + + +A++++
Sbjct: 125 RLKERRNQRAG-TLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELR 183
Query: 1500 KRA-TTIVVAHRLSTIREANMIA----VVRDGAVVEYGSHETLLA 1539
K TI++ + R A IA V+ +G +V G+ LLA
Sbjct: 184 KEGGMTILLVEQ--NARFALEIADRGYVLENGRIVLSGTAAELLA 226
|
Length = 237 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 83.0 bits (205), Expect = 3e-17
Identities = 61/213 (28%), Positives = 110/213 (51%), Gaps = 16/213 (7%)
Query: 1332 LKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYD--PN---QGKVMIEGVDL--REIN 1384
LK+ L + + A++G SG GKST I + PN G++ G ++ +++
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87
Query: 1385 VKWLRKQTALVGQEPALFAGTIRDNIALGNPK----ASWAEIEEAAEEAYIHKFISSLPQ 1440
+ LRK +V Q+ F +I DN+A G P+ + +++E E++ +L
Sbjct: 88 LVELRKNIGMVFQKGNPFPQSIFDNVAYG-PRIHGTKNKKKLQEIVEKSLKD---VALWD 143
Query: 1441 GYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSK 1500
+ ++ + LSGGQ+QR+ IARA+ VLL+DE +SALD S + +++ + K+ +
Sbjct: 144 EVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE 203
Query: 1501 RATTIVVAHRL-STIREANMIAVVRDGAVVEYG 1532
+ T ++V H + R ++ A G +VE
Sbjct: 204 KYTIVIVTHNMQQAARVSDQTAFFYMGELVECN 236
|
Length = 259 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 82.8 bits (204), Expect = 3e-17
Identities = 67/230 (29%), Positives = 112/230 (48%), Gaps = 28/230 (12%)
Query: 1332 LKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYD-----PNQGKVMIEGVDL--REIN 1384
++D + ++ + +G SG GKSTV+ + R D +G V G D+ + ++
Sbjct: 24 VRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVD 83
Query: 1385 VKWLRKQTALVGQEPALFAGTIRDNIALG----NPKASWAE-IEEAAEEAYIHKFISSLP 1439
+R+ +V Q+P F+ +I DN+A G K + ++ A + A +L
Sbjct: 84 PVVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGA-------ALW 136
Query: 1440 QGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVS 1499
+ ++ SG+ LSGGQ+QR+ IARAI VLLLDE SALD + + V++ + ++
Sbjct: 137 DEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK 196
Query: 1500 KRATTIVVAHRL-STIREANMIAVV--------RDGAVVEYGSHETLLAS 1540
K T +V H + IR A+ A R G +VE G + +
Sbjct: 197 KDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQIFQN 246
|
Length = 261 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 82.7 bits (204), Expect = 4e-17
Identities = 70/247 (28%), Positives = 116/247 (46%), Gaps = 35/247 (14%)
Query: 1318 MVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEG 1377
V + E VLK L+ G +++++G SGSGKST + I P++G +++ G
Sbjct: 7 NVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNG 66
Query: 1378 VDLREI-------------NVKWLRKQTALVGQEPALFAG-TIRDNI------ALGNPKA 1417
+ + ++ LR + +V Q L++ T+ +N+ LG K
Sbjct: 67 QTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQ 126
Query: 1418 SWAEIEEAAEEA--YIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLL 1475
EA E A Y+ K E G+ V LSGGQ+QR++IARA+ VLL
Sbjct: 127 ------EARERAVKYLAKVGID-----ERAQGKYPVHLSGGQQQRVSIARALAMEPEVLL 175
Query: 1476 LDEASSALDLESEKHVQDALRKVSKRA-TTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGS 1533
DE +SALD E V ++++++ T +VV H + R ++ + + G + E G+
Sbjct: 176 FDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGA 235
Query: 1534 HETLLAS 1540
E L +
Sbjct: 236 PEQLFGN 242
|
Length = 257 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 83.8 bits (207), Expect = 4e-17
Identities = 70/270 (25%), Positives = 132/270 (48%), Gaps = 42/270 (15%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
I+ GV+ +Y + V++ L+ I + L+G +G GKST+ ++ P +G I
Sbjct: 5 IDLVGVSKSYGDK---VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKI 61
Query: 733 TLDGHDLKSLQVKWLRTQIGMVGQ-EPILFATSILENVLM-----GKENATMKEAVAACK 786
T+ G + S + + R IG+V Q + + ++ EN+L+ G ++ +
Sbjct: 62 TVLGEPVPS-RARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIP--- 117
Query: 787 AASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSES 846
S F + L D +V LSGG K+R+ LARA+I DP++L+LDEPT+ LD +
Sbjct: 118 --SLLEF-ARLESKADVRV----ALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHA 170
Query: 847 ESIVQQAIDK-ISVGRTTIVIAH----------RLATVKNANTIV------VLDQG---S 886
++ + + ++ G+T ++ H RL +++ I ++D+ +
Sbjct: 171 RHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDEQIGCN 230
Query: 887 VVEI--GNHRQLLERGGAYHDLVKLASEAV 914
V+EI G+ +L E Y ++++ E +
Sbjct: 231 VIEIYGGDPDELRELIRPYARRIEVSGETL 260
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 81.5 bits (202), Expect = 4e-17
Identities = 61/233 (26%), Positives = 112/233 (48%), Gaps = 39/233 (16%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
++ +T TY + VL D L VK G + +G +G+GK+T + +I P+ G++
Sbjct: 1 LKTNDLTKTYGKK---RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEI 57
Query: 1374 MIEGVDLREINVKWLRKQTALVGQEPALFAG-TIRDNI-----ALGNPKASWAEIEEAAE 1427
+G ++ N++ LR+ AL+ + P + T R+N+ LG K I+E +
Sbjct: 58 TFDGKSYQK-NIEALRRIGALI-EAPGFYPNLTARENLRLLARLLGIRKK---RIDEVLD 112
Query: 1428 EAYIHKFISSLPQGYETQVGESGV------QLSGGQKQRIAIARAILKGSRVLLLDEASS 1481
VG S G KQR+ IA A+L +L+LDE ++
Sbjct: 113 V-----------------VGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTN 155
Query: 1482 ALDLESEKHVQDALRKVSKRATTIVVA-HRLSTIRE-ANMIAVVRDGAVVEYG 1532
LD + K +++ + + + T++++ H LS I++ A+ I ++ G ++E G
Sbjct: 156 GLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 86.2 bits (214), Expect = 5e-17
Identities = 76/239 (31%), Positives = 111/239 (46%), Gaps = 38/239 (15%)
Query: 687 ETVILRSLNLVIPSSKTLALVGTSGGGKSTVFAL-IERF--YDPT---KGLITLDGHDLK 740
++ ++ I + +TLALVG SG GKS V AL I G I DG DL
Sbjct: 22 TVEAVKGISFDIEAGETLALVGESGSGKS-VTALSILGLLPSPAAAHPSGSILFDGEDLL 80
Query: 741 SLQVKWLR----TQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISE 796
+ + LR +IGM+ QEP+ TS+ +GK+ A + A+A + E
Sbjct: 81 AASERQLRGVRGNKIGMIFQEPM---TSLNPLHTIGKQLAEVLRLHRGLSRAAARARALE 137
Query: 797 LPLGYDTQVGDRGT---------QLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESE 847
L L VG +LSGGQ+QR+ +A A+ +P +L+ DEPT+ALD
Sbjct: 138 L-LE---LVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVT-- 191
Query: 848 SIVQ-QAID-----KISVGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLER 899
VQ Q +D + +G + I H L V+ A+ + V+ G +VE G L
Sbjct: 192 --VQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTETLFAA 248
|
Length = 534 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 82.5 bits (204), Expect = 5e-17
Identities = 65/242 (26%), Positives = 112/242 (46%), Gaps = 31/242 (12%)
Query: 690 ILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSL---QVKW 746
+L +++L I +T+ L+G SG GKST+ L+ P +G ++ G DL L Q +
Sbjct: 26 VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRA 85
Query: 747 LRTQIGMVGQE------PILFATSI----LENVLMGKENATMKEAVAACKAASAHSFISE 796
R + +V Q+ P + I L ++ E+
Sbjct: 86 FRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDM--------- 136
Query: 797 LPLGYDTQVGDR-GTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAID 855
+G ++ D+ QLSGGQ QRI +ARA+ P++++LDE S LD ++++ + +
Sbjct: 137 --VGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLR 194
Query: 856 KI--SVGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLERGGAYHDLVKLASE 912
K+ + G + I H L V++ + V+D+G +VE + QLL H +
Sbjct: 195 KLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLLS---FKHPAGRNLQS 251
Query: 913 AV 914
AV
Sbjct: 252 AV 253
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 81.1 bits (201), Expect = 5e-17
Identities = 50/220 (22%), Positives = 98/220 (44%), Gaps = 17/220 (7%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
++ +T Y + +L ++L + + +G +G GK+T +I P G I
Sbjct: 1 LKTNDLTKTYGKKR---VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEI 57
Query: 733 TLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHS 792
T DG + R IG + + P + L +EN + + +
Sbjct: 58 TFDGKSYQKNIEALRR--IGALIEAPGFY------PNLTARENLRLLARLLGIRKKRIDE 109
Query: 793 FISELPLGYDTQVGDRGT-QLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQ 851
+ + L + S G KQR+ +A A++ +P +L+LDEPT+ LD + ++
Sbjct: 110 VLDVVGLK---DSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELR 166
Query: 852 QAI-DKISVGRTTIVIAHRLATV-KNANTIVVLDQGSVVE 889
+ I G T ++ +H L+ + K A+ I ++++G ++E
Sbjct: 167 ELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIE 206
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 81.9 bits (203), Expect = 5e-17
Identities = 59/230 (25%), Positives = 111/230 (48%), Gaps = 24/230 (10%)
Query: 1322 TYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLR 1381
+Y R V+ D L+V G +V L+G +G+GK+T ++I P+ GK++++ D+
Sbjct: 13 SYKKRK---VVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDIT 69
Query: 1382 EINV-KWLRKQTALVGQEPALFAG-TIRDNIALG---NPKASWAEIEEAAEEAYIHKF-I 1435
++ + K R + QE ++F T+ DNI K + +A + +F I
Sbjct: 70 KLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHI 129
Query: 1436 SSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDAL 1495
+ L LSGG+++R+ IARA+ + +LLDE + +D + +Q +
Sbjct: 130 THL-------RDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRII 182
Query: 1496 RKVSKRATTIVVA-HRLSTIREANMIA----VVRDGAVVEYGSHETLLAS 1540
+ + R +++ H +RE I ++ DG V+ GS E ++ +
Sbjct: 183 KHLKDRGIGVLITDH---NVRETLDICDRAYIISDGKVLAEGSPEEIVNN 229
|
Length = 243 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 81.3 bits (201), Expect = 6e-17
Identities = 55/224 (24%), Positives = 107/224 (47%), Gaps = 12/224 (5%)
Query: 673 IEFKGVTFAY-PSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGL 731
I +T + + + ++ + + L+G +G GK+T ++ +P G
Sbjct: 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGF 61
Query: 732 ITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAH 791
T+DG D+ + R ++G + ++ L + L +EN + K
Sbjct: 62 ATVDGFDV-VKEPAEARRRLG------FVSDSTGLYDRLTARENLEYFAGLYGLKGDELT 114
Query: 792 SFISELP--LGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESI 849
+ + EL LG + + R S G +Q++A+ARA++ DP +LLLDEPT+ LD +
Sbjct: 115 ARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRA 174
Query: 850 VQQAIDKI-SVGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIG 891
+++ I ++ ++G+ + H + V+ + +VVL +G VV G
Sbjct: 175 LREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 85.5 bits (212), Expect = 7e-17
Identities = 72/232 (31%), Positives = 116/232 (50%), Gaps = 34/232 (14%)
Query: 687 ETVILRSLNLVIPSSKTLALVGTSGGGKSTV-FALIERFYDPTKGLITLDGHDLKSLQVK 745
V++++++ + +TL LVG SG GKST AL+ ++G I DG L +L +
Sbjct: 298 HNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI--NSQGEIWFDGQPLHNLNRR 355
Query: 746 WL---RTQIGMVGQEPI------LFATSILENVLMGKENATMKEAVAACKAASAHSFISE 796
L R +I +V Q+P L I+E L AA + + + E
Sbjct: 356 QLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGL----RVHQPTLSAAQREQQVIAVMEE 411
Query: 797 LPLGYDTQVGDR-GTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAID 855
+ G D + R + SGGQ+QRIA+ARA+I P +++LDEPTS+LD VQ I
Sbjct: 412 V--GLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKT----VQAQI- 464
Query: 856 KISVGRTT--------IVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLE 898
+++ ++ + I+H L V+ + ++VL QG VVE G+ ++
Sbjct: 465 -LALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCERVFA 515
|
Length = 529 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 85.1 bits (211), Expect = 9e-17
Identities = 67/231 (29%), Positives = 115/231 (49%), Gaps = 34/231 (14%)
Query: 1330 TVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWL- 1388
V+K+ ++ G + LVG SGSGKST + R +QG++ +G L +N + L
Sbjct: 300 VVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLNRRQLL 358
Query: 1389 --RKQTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQV 1446
R + +V Q+P N +L NP+ + +I E + +S+ + E QV
Sbjct: 359 PVRHRIQVVFQDP---------NSSL-NPRLNVLQIIEEGLRVH-QPTLSAAQR--EQQV 405
Query: 1447 ----GESGV----------QLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQ 1492
E G+ + SGGQ+QRIAIARA++ +++LDE +S+LD + +
Sbjct: 406 IAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQIL 465
Query: 1493 DALRKVSK--RATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLAS 1540
L+ + + + + ++H L +R + + V+R G VVE G E + A+
Sbjct: 466 ALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCERVFAA 516
|
Length = 529 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 82.4 bits (204), Expect = 1e-16
Identities = 56/215 (26%), Positives = 103/215 (47%), Gaps = 21/215 (9%)
Query: 1332 LKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVD-LREINVKWLRK 1390
+ KV+ G + +G +G+GK+T I ++ P G + G D +RE + +R+
Sbjct: 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVRE--PRKVRR 66
Query: 1391 QTALVGQEPALFAG-TIRDNIAL--GNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVG 1447
+V Q ++ T R+N+ + E EE AEE + + L + + VG
Sbjct: 67 SIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEE--LLELFE-LGEAADRPVG 123
Query: 1448 ESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVV 1507
SGG ++R+ IA +++ VL LDE ++ LD + + + D +R + + TI++
Sbjct: 124 ----TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILL 179
Query: 1508 -AHRLSTIREANM----IAVVRDGAVVEYGSHETL 1537
H + EA+ IA++ G ++ G+ E L
Sbjct: 180 TTHYME---EADKLCDRIAIIDHGRIIAEGTPEEL 211
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 82.4 bits (203), Expect = 1e-16
Identities = 71/244 (29%), Positives = 114/244 (46%), Gaps = 30/244 (12%)
Query: 668 SVSGKIEFKGVTFAYPSRP--ETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFY 725
S I V++ Y + E L + +L +K ++GT+G GKST+ L
Sbjct: 2 DFSKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQL----- 56
Query: 726 DPTKGL-ITLDGHDL-----------KSLQVKWLRTQIGMVGQEP--ILFATSILENVLM 771
T GL I+ G + K +VK LR +IG+V Q P LF +I +++
Sbjct: 57 --TNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAF 114
Query: 772 GKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPR 831
G N + A K + LP Y V +LSGGQK+R+ALA + D
Sbjct: 115 GPVNLGENKQEAYKKVPELLKLVQ-LPEDY---VKRSPFELSGGQKRRVALAGIIAMDGN 170
Query: 832 ILLLDEPTSALDSESESIVQQAIDKIS--VGRTTIVIAHRLATV-KNANTIVVLDQGSVV 888
L+LDEPT LD + E ++++ + I++ H + V + A+ ++V+ +G V+
Sbjct: 171 TLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVI 230
Query: 889 EIGN 892
IG+
Sbjct: 231 SIGS 234
|
Length = 289 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 1e-16
Identities = 62/242 (25%), Positives = 119/242 (49%), Gaps = 32/242 (13%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
I + V+ +Y + V+L ++L IP +++G +G GKST+ +++ R G I
Sbjct: 2 ITIENVSKSYGT---KVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEI 58
Query: 733 TLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLM--------GKENATMKEAVAA 784
T+DG +L S K L ++ ++ QE + + + +++ G+ + +
Sbjct: 59 TIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINE 118
Query: 785 CKAASAHSFISELPLGYDTQVGDRG-TQLSGGQKQRIALARAMIKDPRILLLDEPTSALD 843
I L L + DR +LSGGQ+QR +A + +D +LLDEP + LD
Sbjct: 119 A--------IEYLHL---EDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLD 167
Query: 844 ----SESESIVQQAIDKISVGRTTIVIAHRL--ATVKNANTIVVLDQGSVVEIGNHRQLL 897
+ I+++ D++ G+T +V+ H + A+ ++ IV L G VV+ G+ +++
Sbjct: 168 MKHSVQIMKILRRLADEL--GKTIVVVLHDINFASCY-SDHIVALKNGKVVKQGSPDEII 224
Query: 898 ER 899
+
Sbjct: 225 QP 226
|
Length = 252 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 80.9 bits (199), Expect = 2e-16
Identities = 63/244 (25%), Positives = 115/244 (47%), Gaps = 15/244 (6%)
Query: 666 LSSVSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFY 725
+S + I+ ++F Y ++ IL +++ I SK A++G SG GKST + R
Sbjct: 1 MSKLIPAIKVNNLSFYYDTQK---ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMN 57
Query: 726 D-----PTKGLITLDGHDL--KSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENATM 778
+ +G + ++ + + + LR Q+ MV +P LF S+ +NV G +
Sbjct: 58 ELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGW 117
Query: 779 KEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEP 838
+ + + ++L ++ LSGGQ+QR+ +ARA+ P++LL+DEP
Sbjct: 118 RPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEP 177
Query: 839 TSALDSESESIVQQAIDKISVGR--TTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQL 896
LD + V+ I + + T ++++H L V + +G+ IG QL
Sbjct: 178 CFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIG---QL 234
Query: 897 LERG 900
+E G
Sbjct: 235 VEFG 238
|
Length = 261 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 80.6 bits (199), Expect = 2e-16
Identities = 68/245 (27%), Positives = 121/245 (49%), Gaps = 12/245 (4%)
Query: 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGK 1372
G+ L V+++ R ++ + GS+ L+G +GSGKST++ L+ P+ G
Sbjct: 1 GLRLSRVSWSAGGRL---IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGT 57
Query: 1373 VMIEGVDLREINVKWLRKQTALVGQE-PALFAGTIRDNIALGN-PKASWAEIEEAAEEAY 1430
V + GVDL ++ + ++ ALV Q+ T+RD +ALG P S + + A
Sbjct: 58 VDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAV 117
Query: 1431 IHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKH 1490
+ + ++ LSGG++QR+ +ARA+ + ++LLLDE ++ LD+ ++
Sbjct: 118 VDRALART--ELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLE 175
Query: 1491 VQDALRKVSKRATTIVVA-HRLS-TIREANMIAVVRDGAVVEYGS-HETLLASHLNGVYA 1547
+R+++ T+V A H L+ + + V+ G VV G E L + + VY
Sbjct: 176 TLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLTPALIRAVYG 235
Query: 1548 SLVRA 1552
V A
Sbjct: 236 --VDA 238
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 82.4 bits (204), Expect = 2e-16
Identities = 74/234 (31%), Positives = 116/234 (49%), Gaps = 26/234 (11%)
Query: 666 LSSVSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFY 725
++SV+ + VT AY + VI + +NL I + + VG SG GKST+ +I
Sbjct: 1 MASVT----LRNVTKAYG---DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE 53
Query: 726 DPTKGLITLDGHDLKSLQVKWLRTQIGMVGQEPILFA-TSILENVLMGKENATMKEAVAA 784
D T G + + + + +GMV Q L+ S+ EN+ G + A K+
Sbjct: 54 DITSGDLFIGEKRMNDVPPA--ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEIN 111
Query: 785 CKAASAHSFISE-LPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALD 843
+ +E L L + + LSGGQ+QR+A+ R ++ +P + LLDEP S LD
Sbjct: 112 QRVNQV----AEVLQLAHLLD--RKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165
Query: 844 SESESIVQQAIDKIS-----VGRTTIVIAH-RLATVKNANTIVVLDQGSVVEIG 891
+ VQ I+ IS +GRT I + H ++ + A+ IVVLD G V ++G
Sbjct: 166 AALR--VQMRIE-ISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVG 216
|
Length = 369 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 79.7 bits (197), Expect = 3e-16
Identities = 56/219 (25%), Positives = 108/219 (49%), Gaps = 10/219 (4%)
Query: 1330 TVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLR 1389
+L D L + G + AL+G +G GKST++ R P G V + + ++ + L
Sbjct: 16 RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLA 75
Query: 1390 KQTALVGQEPALFAG-TIRDNIALG-NPKAS-WAEIEEAAEEAYIHKFISSLPQGYETQV 1446
++ AL+ Q G T+R+ +A G +P S W + + ++ Q +
Sbjct: 76 RRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDN----ARVNQAMEQTRINHL 131
Query: 1447 GESGV-QLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRA-TT 1504
+ + LSGGQ+QR +A + + + V+LLDE ++ LD+ + + +R+++ + T
Sbjct: 132 ADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTV 191
Query: 1505 IVVAHRLS-TIREANMIAVVRDGAVVEYGSHETLLASHL 1542
+ V H L+ R + + V+ +G V+ G+ E ++ L
Sbjct: 192 VTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMTPGL 230
|
Length = 255 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 80.9 bits (199), Expect = 3e-16
Identities = 66/232 (28%), Positives = 120/232 (51%), Gaps = 18/232 (7%)
Query: 1314 IELKMVTFTY-PSRPEVT-VLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQG 1371
I+ + V +TY P+ P + L D L+VK GS AL+G +GSGKST++ + P +G
Sbjct: 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEG 61
Query: 1372 KVMIEGVDL----REINVKWLRKQTALVGQEP--ALFAGTIRDNIALG--NPKASWAEIE 1423
KV + + + ++ +K +RK+ +V Q P LF T+ ++A G N + E
Sbjct: 62 KVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAE 121
Query: 1424 EAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSAL 1483
+ A E + + + +E +S +LSGGQ +R+AIA + VL+LDE ++ L
Sbjct: 122 KIAAEKL--EMVGLADEFWE----KSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGL 175
Query: 1484 DLESEKHVQDALRKVSKRATTIV-VAHRLSTIRE-ANMIAVVRDGAVVEYGS 1533
D ++ + + + T+V V H + + + A+ + ++ G ++ G+
Sbjct: 176 DPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGT 227
|
Length = 288 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 81.7 bits (202), Expect = 3e-16
Identities = 68/226 (30%), Positives = 109/226 (48%), Gaps = 45/226 (19%)
Query: 703 TLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSL-QVKWL--RTQIGMVGQEPI 759
TL +VG SG GKST I T G + G DL + +W R+ I M+ Q+P+
Sbjct: 49 TLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPL 108
Query: 760 ------LFATSILENVL------MGKENATMKEAVAA--CKAASAHSFISELPLGYDTQV 805
+ I+ L + ++ +K+ V A K + I+ P
Sbjct: 109 ASLNPRMTIGEIIAEPLRTYHPKLSRQ--EVKDRVKAMMLKVGLLPNLINRYP------- 159
Query: 806 GDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKI-----SVG 860
+ SGGQ QRI +ARA+I +P++++ DEP SALD SI Q ++ + +G
Sbjct: 160 ----HEFSGGQCQRIGIARALILEPKLIICDEPVSALDV---SIQAQVVNLLQQLQREMG 212
Query: 861 RTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLERGGAYHD 905
+ I IAH LA VK+ ++ ++V+ G VE+G + ++ YH+
Sbjct: 213 LSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEV------YHN 252
|
Length = 331 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 78.8 bits (195), Expect = 7e-16
Identities = 55/232 (23%), Positives = 99/232 (42%), Gaps = 36/232 (15%)
Query: 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGL 731
K KG+ E L+ ++ I + + ++G +G GKST+ LI Y PT G
Sbjct: 24 KKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGK 83
Query: 732 ITLDGHDLKSLQVKWLRTQIGM-VGQEPILFATSILENV-----LMGKENATMKEAVAAC 785
+ + G +V L I + G +P L + EN+ ++G + E
Sbjct: 84 VKVTG------KVAPL---IELGAGFDPEL---TGRENIYLRGLILGLTRKEIDE----- 126
Query: 786 KAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSE 845
K F +EL D V S G R+A + A +P ILLLDE + D
Sbjct: 127 KVDEIIEF-AELGDFIDQPVK----TYSSGMYARLAFSVATHVEPDILLLDEVLAVGD-- 179
Query: 846 SESIVQQAIDKISV----GRTTIVIAHRLATVKNA-NTIVVLDQGSVVEIGN 892
+ ++ +++++ +T ++++H L +K + + L+ G + G+
Sbjct: 180 -AAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGS 230
|
Length = 249 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 82.7 bits (205), Expect = 7e-16
Identities = 53/245 (21%), Positives = 102/245 (41%), Gaps = 34/245 (13%)
Query: 1297 LIDNVKGRKLERSKPL-----------GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMV 1345
++ + + ++ GI L+ ++ P T+L + +V+ G +
Sbjct: 365 ALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDGQ--TLLSELNFEVRPGERL 422
Query: 1346 ALVGGSGSGKSTVIWLIQRFYDPNQGKV-MIEGVDLREINVKWLRKQTALVGQEPALFAG 1404
+ G SG+GK++++ + + G++ M + Q P L G
Sbjct: 423 LITGESGAGKTSLLRALAGLWPWGSGRISMPADSA------------LLFLPQRPYLPQG 470
Query: 1405 TIRDNIALGNPKASW--AEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIA 1462
T+R+ + N + AE+ + + L + LSGG++QR+A
Sbjct: 471 TLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERL-----DEEDRWDRVLSGGEQQRLA 525
Query: 1463 IARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIREANM-IA 1521
AR +L + + LDEA+SALD E+E + L++ AT I V HR + + +
Sbjct: 526 FARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLE 585
Query: 1522 VVRDG 1526
++ D
Sbjct: 586 LLDDA 590
|
Length = 604 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 8e-16
Identities = 68/271 (25%), Positives = 113/271 (41%), Gaps = 57/271 (21%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
I L+ ++ Y RP +L++ L + G + LVG +G+GKST++ ++ +P+ G+V
Sbjct: 4 ITLENLSLAYGDRP---LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEV 60
Query: 1374 MIEGVDLREINVKWLRKQTALVGQEPALFAG-TIRDNIALGNPKASWAEIEEAAEEAYIH 1432
+ + QEP L T+ D + G + E A +
Sbjct: 61 TRPKG-----------LRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLA 109
Query: 1433 KFISSLPQGYETQVGESGV------------------------QLSGGQKQRIAIARAIL 1468
L E + E LSGG ++R+A+ARA+L
Sbjct: 110 DPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALL 169
Query: 1469 KGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAH-R--LSTIREANMIAVVRD 1525
+ +LLLDE ++ LDLES + ++D L++ T IVV+H R L + A I +
Sbjct: 170 EEPDLLLLDEPTNHLDLESIEWLEDYLKR--YPGTVIVVSHDRYFLDNV--ATHILELDR 225
Query: 1526 GAVVEYGSHETLLASHLNGVYASLVRAETEA 1556
G + Y G Y+S + + E
Sbjct: 226 GKLTPYK-----------GNYSSYLEQKAER 245
|
Length = 530 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 8e-16
Identities = 56/198 (28%), Positives = 88/198 (44%), Gaps = 32/198 (16%)
Query: 690 ILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI-------TLDGHDLKSL 742
+L++++L + + + +AL G SG GKST+ + Y P G I +D
Sbjct: 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPR 82
Query: 743 QVKWLRTQ-IGMVGQ----EPILFATSILENVL--MGKENATMKEAVAACKAASAHSFIS 795
+V +R + IG V Q P + A ++ L G A A + A I
Sbjct: 83 EVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPRE---AARARARELLARLNIP 139
Query: 796 E----LPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQ 851
E LP SGG++QR+ +AR I D ILLLDEPT++LD+ + +V
Sbjct: 140 ERLWHLP----------PATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVV 189
Query: 852 QAIDKISVGRTTIV-IAH 868
+ I + ++ I H
Sbjct: 190 ELIAEAKARGAALIGIFH 207
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 79.1 bits (195), Expect = 8e-16
Identities = 58/222 (26%), Positives = 103/222 (46%), Gaps = 27/222 (12%)
Query: 691 LRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQ 750
++ ++ + +TLA++G +G GKST+ ++ +PT G I ++ H L + +
Sbjct: 29 VKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKR 88
Query: 751 IGMVGQE------PILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQ 804
I M+ Q+ P L IL+ L + N ++ + + LP
Sbjct: 89 IRMIFQDPNTSLNPRLRIGQILDFPL--RLNTDLEPEQRRKQIFETLRMVGLLP----DH 142
Query: 805 VGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIV---------QQAID 855
L+ GQKQR+ALARA+I P+I++ DE ++LD S + +Q I
Sbjct: 143 ANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGIS 202
Query: 856 KISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLL 897
I V + +I H ++ ++V+ +G VVE G+ +L
Sbjct: 203 YIYVTQHIGMIKHI------SDQVLVMHEGEVVERGSTADVL 238
|
Length = 267 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 81.8 bits (202), Expect = 9e-16
Identities = 56/215 (26%), Positives = 110/215 (51%), Gaps = 28/215 (13%)
Query: 691 LRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQ 750
L+S+NL + + AL+G +G GKST+ ++ ++PTKG IT++ + L K L Q
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHK-LAAQ 79
Query: 751 --IGMVGQE-PILFATSILENVLMGK------------ENATMKEAVAACKAASAHSFIS 795
IG++ QE ++ ++LEN+ +G+ + M+ A+
Sbjct: 80 LGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRV------RAAMMLLRV 133
Query: 796 ELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAID 855
L + D +V + LS KQ + +A+ ++ D +++++DEPTS+L ++ + ++
Sbjct: 134 GLKVDLDEKVAN----LSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMN 189
Query: 856 KI-SVGRTTIVIAHRLATVKN-ANTIVVLDQGSVV 888
++ G + I+H+LA ++ + V+ GS V
Sbjct: 190 QLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSV 224
|
Length = 510 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 77.4 bits (191), Expect = 1e-15
Identities = 64/221 (28%), Positives = 99/221 (44%), Gaps = 24/221 (10%)
Query: 694 LNLVIPSSKTLALVGTSGGGKSTVFALIERFYDP----TKGLITLDGHDLKSLQVKWLRT 749
LNL + + LALVG SG GKS I P T G I LDG L L ++
Sbjct: 5 LNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGR-- 62
Query: 750 QIGMVGQEPI-----LF--ATSILENVL-MGKENATMKEAVAACKAASAHSFISELPLGY 801
I + Q P LF +E + +GK + + + A E+ Y
Sbjct: 63 HIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKY 122
Query: 802 DTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGR 861
QLSGG QR+ +A A++ +P L+ DEPT+ LD +++ V + + ++
Sbjct: 123 P-------FQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLF 175
Query: 862 TT--IVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLER 899
T ++I H L V A+ + V+D G +VE G +++
Sbjct: 176 GTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYN 216
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 78.7 bits (194), Expect = 1e-15
Identities = 70/231 (30%), Positives = 113/231 (48%), Gaps = 16/231 (6%)
Query: 676 KGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLD 735
+ V+F P R +L L+L P+ K L+G +G GKST+ ++ R P++G I LD
Sbjct: 15 RNVSFRVPGR---TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLD 71
Query: 736 GHDLKSLQVKWLRTQIGMVGQE-PILFATSILENVLMGK---ENATMKEAVA-ACKAASA 790
L+S K ++ + Q+ P ++ E V +G+ A + A K A
Sbjct: 72 AQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEA 131
Query: 791 HSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIV 850
S + PL + ++ D LSGG++QR +A + +D R LLLDEPTSALD + V
Sbjct: 132 ISLVGLKPLAH--RLVD---SLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDV 186
Query: 851 QQAIDKISVGRTTIVIA--HRL-ATVKNANTIVVLDQGSVVEIGNHRQLLE 898
+ ++S R VIA H + + + +V L G ++ G +L+
Sbjct: 187 LALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMR 237
|
Length = 265 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 1e-15
Identities = 69/246 (28%), Positives = 126/246 (51%), Gaps = 36/246 (14%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
I ++ V+ +Y ++ VL D L + G + +++G +G+GKST++ ++ R + G++
Sbjct: 2 ITIENVSKSYGTKV---VLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEI 58
Query: 1374 MIEGVDLREINVKWLRKQTALVGQEPALFAG-TIRDNIALGN-P-------KASWAEIEE 1424
I+G++L K L K+ +++ QE + + T+RD + G P K I E
Sbjct: 59 TIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINE 118
Query: 1425 AAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALD 1484
A E Y+H + L Y +LSGGQ+QR IA + + + +LLDE + LD
Sbjct: 119 AIE--YLH--LEDLSDRYLD-------ELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLD 167
Query: 1485 LESEKH-VQDALRKVSKRA------TTIVVAHRLS-TIREANMIAVVRDGAVVEYGSHET 1536
+ KH VQ + K+ +R T +VV H ++ ++ I +++G VV+ GS +
Sbjct: 168 M---KHSVQ--IMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDE 222
Query: 1537 LLASHL 1542
++ +
Sbjct: 223 IIQPEI 228
|
Length = 252 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 81.9 bits (203), Expect = 1e-15
Identities = 69/228 (30%), Positives = 125/228 (54%), Gaps = 29/228 (12%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPN---Q 1370
+E+K +T T+ V L + LKV+ G +V+L G +G+GKST++ ++ Y P+ +
Sbjct: 6 LEMKNITKTFGG---VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVY-PHGTYE 61
Query: 1371 GKVMIEGVDLREINVKWL-RKQTALVGQEPALFAG-TIRDNIALGNP-----KASWAEIE 1423
G+++ EG +L+ N++ R A++ QE AL ++ +NI LGN + +
Sbjct: 62 GEIIFEGEELQASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMY 121
Query: 1424 EAAEE--AYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASS 1481
A++ A + I+ T VG L GQ+Q + IA+A+ K +R+L+LDE ++
Sbjct: 122 LRAQKLLAQLKLDINP-----ATPVGN----LGLGQQQLVEIAKALNKQARLLILDEPTA 172
Query: 1482 ALDLESE-KHVQDALRKVSKRATT-IVVAHRLSTIRE-ANMIAVVRDG 1526
+L ESE + D +R + I ++H+L+ ++ ++ I V+RDG
Sbjct: 173 SLT-ESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDG 219
|
Length = 506 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 81.8 bits (202), Expect = 1e-15
Identities = 62/232 (26%), Positives = 115/232 (49%), Gaps = 42/232 (18%)
Query: 693 SLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI-----------TLDGHDLKS 741
+++L + + +VGTSG GK+T+ +I +PT G + T G D +
Sbjct: 302 NVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRG 361
Query: 742 LQVKWLRTQIGMVGQEPILFA-TSILENVL------MGKENATMKEAVAACKAAS----- 789
++ IG++ QE L+ ++L+N+ + E A MK AV K
Sbjct: 362 RAKRY----IGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMK-AVITLKMVGFDEEK 416
Query: 790 AHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESI 849
A + + P +LS G++ R+ALA+ +IK+PRI++LDEPT +D ++
Sbjct: 417 AEEILDKYP-----------DELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVD 465
Query: 850 VQQAIDK--ISVGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLE 898
V +I K + +T I+++H + V + + ++ G +V+IG+ +++E
Sbjct: 466 VTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEIVE 517
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 2e-15
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Query: 674 EFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLIT 733
E + ++F Y R L +++L + + + +ALVG +G GKST+ I PT G I
Sbjct: 1 EIENLSFRYGGRT---ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEIL 57
Query: 734 LDGHDLKSLQVKWLRTQIGMVGQ 756
+DG D+ L ++ LR +IG V Q
Sbjct: 58 IDGKDIAKLPLEELRRRIGYVPQ 80
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 78.0 bits (192), Expect = 2e-15
Identities = 60/212 (28%), Positives = 109/212 (51%), Gaps = 16/212 (7%)
Query: 1332 LKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYD-----PNQGKVMIEGVDL--REIN 1384
LK+ L + + A++G SG GKST I + R + GK++ ++ + +
Sbjct: 40 LKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYS 99
Query: 1385 VKWLRKQTALVGQEPALFAGTIRDNIALGNPKASWAE----IEEAAEEAYIHKFISSLPQ 1440
V+ LR +V Q+P F +I DN+ G PK + ++E E++ +++
Sbjct: 100 VEELRTNVGMVFQKPNPFPKSIYDNVTYG-PKIHGIKDKKTLDEIVEKSLRG---AAIWD 155
Query: 1441 GYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSK 1500
+ ++ ++ LSGGQ+QR+ IAR + V+L+DE +SALD S V++ ++++ K
Sbjct: 156 ELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK 215
Query: 1501 RATTIVVAHRL-STIREANMIAVVRDGAVVEY 1531
+ I+V H + R ++ A +G V EY
Sbjct: 216 DYSIIIVTHNMQQAARISDKTAFFLNGYVNEY 247
|
Length = 271 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 2e-15
Identities = 60/253 (23%), Positives = 108/253 (42%), Gaps = 36/253 (14%)
Query: 1273 GLAPDTSMAATAIPAVLQITKRKPLIDNVKGRKLERSKPLGIELKMVTFTYPSRPEVTVL 1332
LA S +P + KR P+ N IELK V+ + +L
Sbjct: 1 QLAHSESSRGVELPEPKEPKKRHPIEIN----------EPLIELKNVSVRRNGKK---IL 47
Query: 1333 KDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKW-LRKQ 1391
D +V G A+VG +G+GK+T++ L+ + P+ G V + G + + LRK+
Sbjct: 48 GDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKR 107
Query: 1392 TALVG---QEPALFAGTIRDNIA------LGNPKASWAEIEEAAEEAYIHKFISS--LPQ 1440
LV E T+RD + +G + + AA + + + +
Sbjct: 108 IGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADR 167
Query: 1441 GYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSK 1500
+ + LS G+++R+ IARA++K +L+LDE + LDL + + + + L +++
Sbjct: 168 PFGS--------LSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAA 219
Query: 1501 RA---TTIVVAHR 1510
+ V H
Sbjct: 220 SPGAPALLFVTHH 232
|
Length = 257 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 77.8 bits (192), Expect = 2e-15
Identities = 54/183 (29%), Positives = 88/183 (48%), Gaps = 26/183 (14%)
Query: 1323 YPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLRE 1382
Y +P L+D L ++ G ++ ++G SG GK+T++ LI F G + ++G
Sbjct: 11 YGGKP---ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGK---- 63
Query: 1383 INVKWLRKQTALVGQEPALFA-GTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQG 1441
V+ + +V Q L ++DN+A G A +E+ H+ +
Sbjct: 64 -PVEGPGAERGVVFQNEGLLPWRNVQDNVAFG---LQLAGVEKMQRLEIAHQMLK----- 114
Query: 1442 YETQVGESGV------QLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDAL 1495
+VG G QLSGGQ+QR+ IARA+ ++LLLDE ALD + + +Q L
Sbjct: 115 ---KVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLL 171
Query: 1496 RKV 1498
K+
Sbjct: 172 LKL 174
|
Length = 255 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 2e-15
Identities = 69/225 (30%), Positives = 108/225 (48%), Gaps = 34/225 (15%)
Query: 685 RPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSL-- 742
+L +++L + S +T+AL+G SG GKST+ L+ P++G ++ G L L
Sbjct: 22 HQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNR 81
Query: 743 -QVKWLRTQIGMVGQEPILFATSILENVLMGKENA--TMKEAVA-----------ACKAA 788
Q K R I MV Q+ I N T++E + A + A
Sbjct: 82 AQRKAFRRDIQMVFQDSI------------SAVNPRKTVREIIREPLRHLLSLDKAERLA 129
Query: 789 SAHSFISELPLGYDTQVGDR-GTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESE 847
A + + L D V D+ QLSGGQ QR+ LARA+ +P++L+LDE S LD +
Sbjct: 130 RASEMLRAVDL--DDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQ 187
Query: 848 SIVQQAIDKIS--VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVE 889
+ V + + K+ G + I H L V+ ++V+D G +VE
Sbjct: 188 AGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVE 232
|
Length = 268 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 78.3 bits (193), Expect = 2e-15
Identities = 60/219 (27%), Positives = 108/219 (49%), Gaps = 37/219 (16%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
++ +GV+F +R I +++L +P K A++G SG GK+T+ LI P G I
Sbjct: 8 VDMRGVSF---TRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEI 64
Query: 733 TLDGHDLKSLQVKWL---RTQIGMVGQEPILFA-TSILENVLMGKENATMKEAVAACKAA 788
DG ++ ++ L R ++ M+ Q LF ++ +NV ++E
Sbjct: 65 LFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAY-----PLRE-------- 111
Query: 789 SAHSFISELPLGYDT------QVGDRG------TQLSGGQKQRIALARAMIKDPRILLLD 836
H+ + PL + T VG RG ++LSGG +R ALARA+ +P +++ D
Sbjct: 112 --HTQLPA-PLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFD 168
Query: 837 EPTSALDSESESIVQQAIDKI--SVGRTTIVIAHRLATV 873
EP D + ++ + I ++ ++G T +V++H + V
Sbjct: 169 EPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEV 207
|
Length = 269 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 78.1 bits (192), Expect = 2e-15
Identities = 66/221 (29%), Positives = 110/221 (49%), Gaps = 18/221 (8%)
Query: 1321 FTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEG--V 1378
F Y P VLK L + LVG +G GKST+ + P +G V+ +G +
Sbjct: 9 FRYQDEP---VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPL 65
Query: 1379 DLREINVKWLRKQTALVGQEP--ALFAGTIRDNIA--LGNPKASWAEIEEAAEEAYIHKF 1434
D + + LR+Q A V Q+P +F I +IA L N AEI +EA
Sbjct: 66 DYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEAL--TL 123
Query: 1435 ISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDA 1494
+ + Q + Q + LS GQK+R+AIA A++ +R LLLDE ++ LD +
Sbjct: 124 VDA--QHFRHQPIQC---LSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAI 178
Query: 1495 LRKVSKRATTIVV-AHRLSTIRE-ANMIAVVRDGAVVEYGS 1533
+R++ + +++ +H + I E ++ + V+R G ++ +G+
Sbjct: 179 IRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGA 219
|
Length = 271 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 76.6 bits (189), Expect = 3e-15
Identities = 63/234 (26%), Positives = 111/234 (47%), Gaps = 22/234 (9%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
I+L + Y + L D L G + L+G SG+GKS+++ ++ P G +
Sbjct: 3 IQLNGINCFYGAH---QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL 59
Query: 1374 MIEG--VDL-REINVK---WLRKQTALVGQE----PALFAGTIRDNIALGNPKASWAEIE 1423
I G D + + K LR+ +V Q+ P L T++ N+ + +
Sbjct: 60 NIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHL---TVQQNLIEAPCRVLGLSKD 116
Query: 1424 EAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSAL 1483
+A A K + L + + LSGGQ+QR+AIARA++ +VLL DE ++AL
Sbjct: 117 QALARA--EKLLERLR--LKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAAL 172
Query: 1484 DLESEKHVQDALRKVSKRA-TTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHE 1535
D E + +R++++ T ++V H + R+ A+ + + +G +VE G
Sbjct: 173 DPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDAS 226
|
Length = 242 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 78.4 bits (193), Expect = 3e-15
Identities = 57/226 (25%), Positives = 99/226 (43%), Gaps = 24/226 (10%)
Query: 1328 EVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGV--------- 1378
E+ L + + + ++G SGSGKST++ G + + +
Sbjct: 38 ELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNH 97
Query: 1379 ------DLREI-NVKWLRKQTALVGQEP--ALFAGTIRDNIALGNPKASWAEIEEAAEEA 1429
++I N K LR++ ++V Q P LF TI +I G P A + EA + A
Sbjct: 98 ELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFG-PVALGVKKSEAKKLA 156
Query: 1430 YIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEK 1489
+ L Y + S LSGGQK+R+AIA + +L+ DE ++ LD + E
Sbjct: 157 KFYLNKMGLDDSY---LERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEH 213
Query: 1490 HVQDALRKVSKRA-TTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGS 1533
+ + T V+ H + + E A+ + V+ G +++ G+
Sbjct: 214 EMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGT 259
|
Length = 320 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 76.3 bits (188), Expect = 3e-15
Identities = 54/224 (24%), Positives = 107/224 (47%), Gaps = 30/224 (13%)
Query: 1328 EVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKW 1387
+ ++ +V+ G + L+G +G+GK+T I ++ P G+ + G D+ +
Sbjct: 12 DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPRE- 70
Query: 1388 LRKQTALVGQEPALFAG-TIRDNIAL-----GNPKASWAE-IEEAAEEAYIHKFISSLPQ 1440
+R++ +V Q+ ++ T +N+ + G P A E I+E + + + L +
Sbjct: 71 VRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVK 130
Query: 1441 GYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSK 1500
Y SGG ++R+ IAR+++ VL LDE + LD ++ HV + + K+ +
Sbjct: 131 TY-----------SGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKE 179
Query: 1501 R-ATTIVVAHRLST--IREANM----IAVVRDGAVVEYGSHETL 1537
TI+ L+T + EA +A++ G ++ G+ E L
Sbjct: 180 EFGMTIL----LTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 80.0 bits (198), Expect = 4e-15
Identities = 66/260 (25%), Positives = 113/260 (43%), Gaps = 35/260 (13%)
Query: 1290 QITKRKPLIDNVKGRKLERSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVG 1349
+ + KPL K + +E + V+ Y +LKD ++ G +A+VG
Sbjct: 299 PVEEGKPLAFRFPPPGKRLGKLV-LEFENVSKGYDGGR--LLLKDLSFRIDRGDRIAIVG 355
Query: 1350 GSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQEPALFAG--TIR 1407
+G+GKST++ L+ P G V ++ + Q T+
Sbjct: 356 PNGAGKSTLLKLLAGELGPLSGTV--------KVGET---VKIGYFDQHRDELDPDKTVL 404
Query: 1408 DNIALGNPKASWAEIEEAAEEAYIHKF-ISSLPQGYETQVGESGVQLSGGQKQRIAIARA 1466
+ ++ G P E+ AY+ +F + Q E VG LSGG+K R+ +A+
Sbjct: 405 EELSEGFPDGDEQEVR-----AYLGRFGFTGEDQ--EKPVGV----LSGGEKARLLLAKL 453
Query: 1467 ILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAH-R--LSTIREANMIAVV 1523
+L+ +LLLDE ++ LD+ES + +++AL T ++V+H R L + A I +V
Sbjct: 454 LLQPPNLLLLDEPTNHLDIESLEALEEALLDFE--GTVLLVSHDRYFLDRV--ATRIWLV 509
Query: 1524 RDGAVVEYGSHETLLASHLN 1543
D G +E L
Sbjct: 510 EDKVEEFEGGYEDYLEQKKE 529
|
Length = 530 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 76.0 bits (187), Expect = 4e-15
Identities = 64/216 (29%), Positives = 108/216 (50%), Gaps = 23/216 (10%)
Query: 691 LRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQ 750
L+ +NL I + ++L+G SG GKST+ LI PT G + L+G + T+
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQI---------TE 51
Query: 751 IG----MVGQEPILFA-TSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQV 805
G +V Q L ++ EN+ + + + + + + A I+ + L
Sbjct: 52 PGPDRMVVFQNYSLLPWLTVRENIALAV-DRVLPDLSKSERRAIVEEHIALVGLTEAAD- 109
Query: 806 GDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKI--SVGRTT 863
R QLSGG KQR+A+ARA+ P++LLLDEP ALD+ + +Q+ + +I T
Sbjct: 110 -KRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTV 168
Query: 864 IVIAHRL-ATVKNANTIVVLDQGSVVEIGNHRQLLE 898
+++ H + + ++ +V+L G IG Q+LE
Sbjct: 169 LMVTHDVDEALLLSDRVVMLTNGPAANIG---QILE 201
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 75.8 bits (187), Expect = 4e-15
Identities = 55/226 (24%), Positives = 108/226 (47%), Gaps = 23/226 (10%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
+E++ VT + VT L D V+ G + L+G +G+GK+T I +I P+ G+V
Sbjct: 1 LEVENVTKRFG---RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEV 57
Query: 1374 MIEGVDLREINVKWLRKQTALVGQEPALFAG-TIRDN-IALGNPKASWAEIEEAAEEA-- 1429
+ +G L R + + +E L+ + D + L K + EEA
Sbjct: 58 LFDGKPLDIAA----RNRIGYLPEERGLYPKMKVIDQLVYLAQLKG--LKKEEARRRIDE 111
Query: 1430 YIHKF-ISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESE 1488
++ + +S Y + E +LS G +Q++ A++ +L+LDE S LD +
Sbjct: 112 WLERLELS----EYANKRVE---ELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNV 164
Query: 1489 KHVQDALRKVSKRATTIV-VAHRLSTIRE-ANMIAVVRDGAVVEYG 1532
+ ++D +R++++ T++ H++ + E + + ++ G V YG
Sbjct: 165 ELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 77.4 bits (191), Expect = 4e-15
Identities = 58/225 (25%), Positives = 112/225 (49%), Gaps = 17/225 (7%)
Query: 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGL 731
+E +GVT ++ + + +++ +P + L+G +G GK+T F +I +PT+G
Sbjct: 2 ALEIEGVTKSFGDK---KAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGE 58
Query: 732 ITLDGHDLKSLQVKWLRTQIGMVGQEPILFA-TSILENVLMGKENATMKEAVAACKAASA 790
IT +G L + +IG + +E L+ ++ + + E M +A
Sbjct: 59 ITWNGGPLSQEI----KNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEI---QKKL 111
Query: 791 HSFISELPL-GYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESI 849
+++ L + G T + +LS G +Q+I A+I +P +L+LDEP S LD + +
Sbjct: 112 QAWLERLEIVGKKT---KKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVEL 168
Query: 850 VQQAIDKI-SVGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGN 892
++ AI ++ G T I +HR+ V+ + +++L +G V G
Sbjct: 169 LKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGT 213
|
Length = 300 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 5e-15
Identities = 54/203 (26%), Positives = 83/203 (40%), Gaps = 49/203 (24%)
Query: 1331 VLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMI----EGVDLREI--- 1383
VLK+ L V G VAL G SG+GKST++ + Y P+ G++++ VDL +
Sbjct: 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPR 82
Query: 1384 NVKWLRKQT-ALVGQ---------------EPALFAGTIRDNIALGNPKASWAEIEEAAE 1427
V +R++T V Q EP L G R A
Sbjct: 83 EVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPR------------EAARARAR 130
Query: 1428 EAYIHKFIS----SLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSAL 1483
E I LP SGG++QR+ IAR + +LLLDE +++L
Sbjct: 131 ELLARLNIPERLWHLPPA----------TFSGGEQQRVNIARGFIADYPILLLDEPTASL 180
Query: 1484 DLESEKHVQDALRKVSKRATTIV 1506
D + + V + + + R ++
Sbjct: 181 DAANRQVVVELIAEAKARGAALI 203
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 77.0 bits (189), Expect = 5e-15
Identities = 73/251 (29%), Positives = 116/251 (46%), Gaps = 25/251 (9%)
Query: 677 GVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDG 736
+ F Y P +L+ LNL S LVG +G GKST+F + P KG + G
Sbjct: 6 DLWFRYQDEP---VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQG 62
Query: 737 H--DLKSLQVKWLRTQIGMVGQEP--ILFATSILENVLMGKENATMKEAVAACKAASAHS 792
D + LR Q+ V Q+P +F T I ++ N + EA + A +
Sbjct: 63 KPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALT 122
Query: 793 FISELPLGYDTQ-VGDRGTQ-LSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIV 850
+ D Q + Q LS GQK+R+A+A A++ R LLLDEPT+ LD + +
Sbjct: 123 LV-------DAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQM 175
Query: 851 QQAIDKI-SVGRTTIVIAHRLATVKN-ANTIVVLDQGSVV------EIGNHRQLLERGGA 902
I +I + G I+ +H + + ++ + VL QG ++ E+ + +E+ G
Sbjct: 176 IAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFACTEAMEQAGL 235
Query: 903 YHD-LVKLASE 912
LVKL ++
Sbjct: 236 TQPWLVKLHTQ 246
|
Length = 271 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 74.1 bits (183), Expect = 5e-15
Identities = 51/197 (25%), Positives = 81/197 (41%), Gaps = 50/197 (25%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
IE + ++ A P V+L+ L+ I L + G SG GKS++F + + G I
Sbjct: 1 IELENLSLATPD--GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRI 58
Query: 733 TLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHS 792
+ + + + Q P L T++E +
Sbjct: 59 GMPEGE-----------DLLFLPQRPYLPL-------------GTLREQLI--------- 85
Query: 793 FISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQ 852
P LSGG++QR+A AR ++ P+ + LDE TSALD ESE + Q
Sbjct: 86 ----YPWD---------DVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQ 132
Query: 853 AIDKISVGRTTIVIAHR 869
+ + +G T I + HR
Sbjct: 133 LLKE--LGITVISVGHR 147
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 75.8 bits (187), Expect = 5e-15
Identities = 40/170 (23%), Positives = 73/170 (42%), Gaps = 30/170 (17%)
Query: 690 ILRSLNLVIPSSKTLALVGTSGGGKSTVFALIE---RFYDPTKGLITLDGHDLKSLQVKW 746
IL ++L + S + +A++G+SG GK+T+ I T G I +G K Q +
Sbjct: 22 ILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQ- 80
Query: 747 LRTQIGMVGQ-----------EPILFATSILENVLMGKENATMKEAVAACKAASAHSFIS 795
+ V Q E + + + + + +
Sbjct: 81 --KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLA------ 132
Query: 796 ELPLGYDTQVGD-RGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDS 844
T++G +SGG+++R+++A ++ DP++L+LDEPTS LDS
Sbjct: 133 ------LTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDS 176
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 79.7 bits (197), Expect = 6e-15
Identities = 59/221 (26%), Positives = 108/221 (48%), Gaps = 16/221 (7%)
Query: 690 ILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPT----KGLITLDGHDLKSLQVK 745
+L++++ V + LA++G+SG GK+T+ + F P G + L+G + + K
Sbjct: 40 LLKNVSGVAKPGELLAVMGSSGAGKTTLMNALA-FRSPKGVKGSGSVLLNGMPIDA---K 95
Query: 746 WLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAAC-KAASAHSFISELPLG--YD 802
+R V Q+ + T + LM + + M V K + L L +
Sbjct: 96 EMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCAN 155
Query: 803 TQVGDRGTQ--LSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISV- 859
T++G G LSGG+++R+A A ++ DP +L DEPTS LDS V Q + ++
Sbjct: 156 TRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQK 215
Query: 860 GRTTIVIAHRLAT--VKNANTIVVLDQGSVVEIGNHRQLLE 898
G+T I H+ ++ + + I+++ +G V +G+ Q +
Sbjct: 216 GKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVP 256
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 7e-15
Identities = 53/192 (27%), Positives = 93/192 (48%), Gaps = 25/192 (13%)
Query: 690 ILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRT 749
+ +++L +P + L+G +G GKST+ +I PT G I DGH W R
Sbjct: 15 AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHP-------WTRK 67
Query: 750 ---QIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVG 806
+IG + + P L+ EN L +EN + + + ++ + L +
Sbjct: 68 DLHKIGSLIESPPLY-----EN-LTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGK-- 119
Query: 807 DRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALD----SESESIVQQAIDKISVGRT 862
+ Q S G KQR+ +A A++ P++L+LDEPT+ LD E +++ ++ G T
Sbjct: 120 KKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQ---GIT 176
Query: 863 TIVIAHRLATVK 874
I+ +H L+ V+
Sbjct: 177 VILSSHILSEVQ 188
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.2 bits (185), Expect = 8e-15
Identities = 61/208 (29%), Positives = 100/208 (48%), Gaps = 22/208 (10%)
Query: 1331 VLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRK 1390
VL + + G M+A+VG SGSGKST++ L+ P G V+ G + +++
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSS---AA 80
Query: 1391 QTALVGQEPAL---FAGTIRDNIALGN---P----KASWAEIEEAAEEAYIHKFISSLPQ 1440
+ L Q+ F + D AL N P K AEI A E ++++
Sbjct: 81 KAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALE-----MLAAV-- 133
Query: 1441 GYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSK 1500
G E + +LSGG++QR+AIARA++ R++L DE + LD + + L ++++
Sbjct: 134 GLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNR 193
Query: 1501 RATT--IVVAHRLSTIREANMIAVVRDG 1526
T +VV H L + + +RDG
Sbjct: 194 LQGTAFLVVTHDLQLAKRMSRQLEMRDG 221
|
Length = 233 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 73.3 bits (181), Expect = 9e-15
Identities = 51/197 (25%), Positives = 83/197 (42%), Gaps = 50/197 (25%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
IEL+ ++ P +LKD ++K G + + G SG+GKS++ + + G++
Sbjct: 1 IELENLSLATPD--GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRI 58
Query: 1374 MIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHK 1433
+ + Q P L GT+R+ + P W ++
Sbjct: 59 -----------GMPEGEDLLFLPQRPYLPLGTLREQLIY--P---WDDV----------- 91
Query: 1434 FISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQD 1493
LSGG++QR+A AR +L + + LDEA+SALD ESE +
Sbjct: 92 -------------------LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQ 132
Query: 1494 ALRKVSKRATTIVVAHR 1510
L++ T I V HR
Sbjct: 133 LLKE--LGITVISVGHR 147
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 79.1 bits (195), Expect = 9e-15
Identities = 74/249 (29%), Positives = 115/249 (46%), Gaps = 49/249 (19%)
Query: 685 RPETVILRSLNLVIPSSKTLALVGTSGGGKS-TVFALIERFYDPTKGLITLDGHDL--KS 741
+ + +R+L+ + +TLA+VG SG GKS T AL+ R + GL+ D L +S
Sbjct: 26 QQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALM-RLLEQAGGLVQCDKMLLRRRS 84
Query: 742 LQVKWLRTQ------------IGMVGQEPIL-----------FATSILENVLMGKENATM 778
QV L Q + M+ QEP+ A SI + +E A M
Sbjct: 85 RQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEA-M 143
Query: 779 KEA---VAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLL 835
EA + + A + +S P QLSGG +QR+ +A A+ P +L+
Sbjct: 144 VEAKRMLDQVRIPEAQTILSRYP-----------HQLSGGMRQRVMIAMALSCRPAVLIA 192
Query: 836 DEPTSALDSESESIVQQAI----DKISVGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEI 890
DEPT+ALD ++ + Q I ++S+G I I H + V A+ ++V+ QG VE
Sbjct: 193 DEPTTALDVTIQAQILQLIKVLQKEMSMG--VIFITHDMGVVAEIADRVLVMYQGEAVET 250
Query: 891 GNHRQLLER 899
G+ Q+
Sbjct: 251 GSVEQIFHA 259
|
Length = 623 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.7 bits (186), Expect = 1e-14
Identities = 58/235 (24%), Positives = 117/235 (49%), Gaps = 18/235 (7%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
++++ + + Y LK + +K G + A++GG+G+GKST+ + P+ G++
Sbjct: 6 LKVEELNYNYSDGTHA--LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRI 63
Query: 1374 MIEG--VDLREINVKWLRKQTALVGQEP--ALFAGTIRDNIALG--NPKASWAEIEEAAE 1427
+ +G +D + LR+ +V Q+P LF+ ++ +++ G N K E+ + +
Sbjct: 64 LFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVD 123
Query: 1428 EAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLES 1487
A I L + LS GQK+R+AIA ++ +VL+LDE ++ LD
Sbjct: 124 NALKRTGIEHLKD-------KPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMG 176
Query: 1488 EKHVQDALRKVSKR-ATTIVVA-HRLSTIR-EANMIAVVRDGAVVEYGSHETLLA 1539
+ L ++ K TI++A H + + + + V+++G V+ G+ + + A
Sbjct: 177 VSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231
|
Length = 283 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.8 bits (186), Expect = 1e-14
Identities = 68/233 (29%), Positives = 113/233 (48%), Gaps = 39/233 (16%)
Query: 691 LRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLD----------GHDLK 740
L +++L I + +AL+G SG GKST+ + GLIT D G ++
Sbjct: 20 LHAVDLNIHHGEMVALLGPSGSGKSTLLRHLS-------GLITGDKSAGSHIELLGRTVQ 72
Query: 741 -----SLQVKWLRTQIGMVGQE-PILFATSILENVLMGKENAT--MKEAVAACKAASAHS 792
+ ++ R G + Q+ ++ S+LENVL+G +T + +
Sbjct: 73 REGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQR 132
Query: 793 FISELPLGYDTQVG------DRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSES 846
+ L T+VG R + LSGGQ+QR+A+ARA+++ +++L DEP ++LD ES
Sbjct: 133 ALQAL-----TRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPES 187
Query: 847 ESIVQQAIDKISV--GRTTIVIAHRLA-TVKNANTIVVLDQGSVVEIGNHRQL 896
IV + I+ G T +V H++ ++ IV L QG V G+ +Q
Sbjct: 188 ARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQF 240
|
Length = 262 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.8 bits (186), Expect = 1e-14
Identities = 72/244 (29%), Positives = 114/244 (46%), Gaps = 29/244 (11%)
Query: 1337 LKVKGGSMVALVGGSGSGKSTVI----WLIQRFYDPNQ------GKVMIEGVDLREINVK 1386
L + G MVAL+G SGSGKST++ LI V EG R+I
Sbjct: 25 LNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKS 84
Query: 1387 WLRKQTALVGQEPALFAG-TIRDNIALGNPKAS--WAEIEEAAEEAYIHKFISSLPQGYE 1443
R T + Q+ L ++ +N+ +G ++ W + + +L
Sbjct: 85 --RANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQAL----- 137
Query: 1444 TQVG------ESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRK 1497
T+VG + LSGGQ+QR+AIARA+++ ++V+L DE ++LD ES + V D LR
Sbjct: 138 TRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRD 197
Query: 1498 VSKR--ATTIVVAHRLS-TIREANMIAVVRDGAVVEYGSHETLLASHLNGVYASLVRAET 1554
+++ T +V H++ +R I +R G V GS + + +Y S+ R E
Sbjct: 198 INQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQFDNERFDHLYRSINRVEE 257
Query: 1555 EANA 1558
A A
Sbjct: 258 NAKA 261
|
Length = 262 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 76.0 bits (187), Expect = 1e-14
Identities = 60/233 (25%), Positives = 118/233 (50%), Gaps = 18/233 (7%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
I+F+ V Y + +++ L+ + + L+G +G GK+T ++ P G I
Sbjct: 8 IDFRNVEKRYG---DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSI 64
Query: 733 TLDGHDLKSLQVKWLRTQIGMVGQ----EPILFATSILENVLMGKENATMKEAVAACKAA 788
+L G + S + + R ++G+V Q +P ++ EN+L+ + A A
Sbjct: 65 SLCGEPVPS-RARHARQRVGVVPQFDNLDPDF---TVRENLLVFGRYFGLSAAAARALVP 120
Query: 789 SAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESES 848
F ++L D +VG+ LSGG K+R+ LARA++ DP +L+LDEPT+ LD ++
Sbjct: 121 PLLEF-AKLENKADAKVGE----LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARH 175
Query: 849 IVQQAIDKI-SVGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLER 899
++ + + + + G+T ++ H + + + + V+++G + G L+E
Sbjct: 176 LMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228
|
Length = 306 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 2e-14
Identities = 56/234 (23%), Positives = 103/234 (44%), Gaps = 28/234 (11%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
+EF+ V+ Y ++L+ L+ I +A+VG +G GKST+ L+ P G +
Sbjct: 322 LEFENVSKGYDGGR--LLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTV 379
Query: 733 TLDGHDLKSLQVKWLRTQIGMVGQE--PILFATSILENVLMGKENATMKEAVAACKAASA 790
+ G +K IG Q + ++LE + G + +E
Sbjct: 380 KV-GETVK----------IGYFDQHRDELDPDKTVLEELSEGFPDGDEQEV--------- 419
Query: 791 HSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIV 850
+++ + LSGG+K R+ LA+ +++ P +LLLDEPT+ LD ES +
Sbjct: 420 RAYLGRFGFTGE-DQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEAL 478
Query: 851 QQAIDKISVGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLERGGAY 903
++A+ G T ++++H + A I +++ G + LE+
Sbjct: 479 EEALLDFE-G-TVLLVSHDRYFLDRVATRIWLVEDKVEEFEGGYEDYLEQKKER 530
|
Length = 530 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 73.6 bits (181), Expect = 2e-14
Identities = 54/229 (23%), Positives = 107/229 (46%), Gaps = 22/229 (9%)
Query: 1314 IELKMVTFTY-PSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGK 1372
I +T + + V + VK G + L+G +G+GK+T + ++ +P+ G
Sbjct: 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGF 61
Query: 1373 VMIEGVDLREINVKWLRKQTALVGQEPALFAG-TIRDNIAL-----G-NPKASWAEIEEA 1425
++G D+ + R++ V L+ T R+N+ G A +EE
Sbjct: 62 ATVDGFDVVK-EPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEEL 120
Query: 1426 AEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDL 1485
A+ + + + + +VG S G +Q++AIARA++ VLLLDE ++ LD+
Sbjct: 121 ADRLGMEELL-------DRRVGG----FSTGMRQKVAIARALVHDPPVLLLDEPTTGLDV 169
Query: 1486 ESEKHVQDALRKVSKRATTIVVA-HRLSTI-REANMIAVVRDGAVVEYG 1532
+ + +++ +R++ I+ + H + + R + + V+ G VV G
Sbjct: 170 MATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 2e-14
Identities = 60/230 (26%), Positives = 104/230 (45%), Gaps = 34/230 (14%)
Query: 692 RSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQV------- 744
R ++ + + L +VG SG GKST+ + P G T L++
Sbjct: 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79
Query: 745 --KWLRTQIGMVGQEPILFATSILENVLMG-KENATMKEAVAACKA-------ASAHSFI 794
+ +RT+ G V Q P + + M A + E + A A A+A ++
Sbjct: 80 RRRLMRTEWGFVHQNP-------RDGLRMRVSAGANIGERLMAIGARHYGNIRATAQDWL 132
Query: 795 SELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAI 854
E+ + ++ D SGG +QR+ +AR ++ PR++ +DEPT LD S+ + +
Sbjct: 133 EEVEIDPT-RIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDV---SVQARLL 188
Query: 855 DKI-----SVGRTTIVIAHRLATVK-NANTIVVLDQGSVVEIGNHRQLLE 898
D + +G I++ H L + A ++V+ QG VVE G Q+L+
Sbjct: 189 DLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVLD 238
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 77.4 bits (191), Expect = 2e-14
Identities = 64/214 (29%), Positives = 111/214 (51%), Gaps = 15/214 (7%)
Query: 1329 VTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREIN-VKW 1387
V VLK + G + AL+GG+G+GKST++ +I P+ G + I G + K
Sbjct: 24 VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKA 83
Query: 1388 LRKQTALVGQEPALFAG-TIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQV 1446
+ LV QEP LF ++++NI G PK A + + +++L G + +
Sbjct: 84 HQLGIYLVPQEPLLFPNLSVKENILFGLPK-------RQASMQKMKQLLAAL--GCQLDL 134
Query: 1447 GESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALD-LESEKHVQDALRKVSKRATTI 1505
S L +Q + I R +++ SR+L+LDE +++L E+E+ +R++ + I
Sbjct: 135 DSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSR-IRELLAQGVGI 193
Query: 1506 V-VAHRLSTIRE-ANMIAVVRDGAVVEYGSHETL 1537
V ++H+L IR+ A+ I+V+RDG + G L
Sbjct: 194 VFISHKLPEIRQLADRISVMRDGTIALSGKTADL 227
|
Length = 510 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 3e-14
Identities = 58/212 (27%), Positives = 106/212 (50%), Gaps = 33/212 (15%)
Query: 704 LALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSL---QVKWLRTQIGMVG--QEP 758
++L+G +G GK+TVF + FY PT G I L G ++ L Q+ ++G+V Q
Sbjct: 34 VSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQI----ARMGVVRTFQHV 89
Query: 759 ILFAT-SILENVLMGKE---NATM------------KEAVAACKAASAHSFISELPLGYD 802
LF +++EN+L+ + + E+ A +AA+ + L +
Sbjct: 90 RLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHA-N 148
Query: 803 TQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKI--SVG 860
Q G+ L+ GQ++R+ +AR M+ P IL+LDEP + L+ + + + I ++
Sbjct: 149 RQAGN----LAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHN 204
Query: 861 RTTIVIAHRLATVKN-ANTIVVLDQGSVVEIG 891
T ++I H + V ++ I V++QG+ + G
Sbjct: 205 VTVLLIEHDMKLVMGISDRIYVVNQGTPLANG 236
|
Length = 255 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 4e-14
Identities = 55/205 (26%), Positives = 103/205 (50%), Gaps = 26/205 (12%)
Query: 1330 TVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLR 1389
T + + L V S+ L+G +G+GKST++ +I P G+++ +G K L
Sbjct: 14 TAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDG---HPWTRKDLH 70
Query: 1390 KQTALVGQEPALFAG-TIRDNIA-----LGNPKASWAEIEEAAEEAYIHKFISSLPQGYE 1443
K +L+ + P L+ T R+N+ LG P + I+E I L +
Sbjct: 71 KIGSLI-ESPPLYENLTARENLKVHTTLLGLPD---SRIDEVLN-------IVDLTNTGK 119
Query: 1444 TQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRAT 1503
+ Q S G KQR+ IA A+L ++L+LDE ++ LD + +++ +R ++
Sbjct: 120 KKAK----QFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGI 175
Query: 1504 TIVV-AHRLSTIRE-ANMIAVVRDG 1526
T+++ +H LS +++ A+ I ++ +G
Sbjct: 176 TVILSSHILSEVQQLADHIGIISEG 200
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.8 bits (189), Expect = 4e-14
Identities = 63/259 (24%), Positives = 112/259 (43%), Gaps = 28/259 (10%)
Query: 638 QGTVAATRVFEIIDRVPEIDPYNSEGRKLSSVSG--KIEFKGVTFAYPSRPETVILRSLN 695
VA ++ ++ E+ PY ++ + + +E + V FAY + +N
Sbjct: 291 TAQVAFNKIAKL-----ELAPYKADFPRPQAFPDWKTLELRNVRFAYQ--DNAFHVGPIN 343
Query: 696 LVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIGMVG 755
L I + + L+G +G GKST+ L+ Y P G I LDG + + Q++ R V
Sbjct: 344 LTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVF 403
Query: 756 QEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRG---TQL 812
+ LF L+G E + + ++ L L + T + D +L
Sbjct: 404 SDYHLFDQ------LLGPEGKASPQLIEK--------WLQRLELAHKTSLNDGRFSNLKL 449
Query: 813 SGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAI--DKISVGRTTIVIAHRL 870
S GQK+R+AL A++++ IL+LDE + D Q + G+T I+H
Sbjct: 450 STGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDD 509
Query: 871 ATVKNANTIVVLDQGSVVE 889
+A+ ++ + G + E
Sbjct: 510 HYFIHADRLLEMRNGQLSE 528
|
Length = 546 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.6 bits (181), Expect = 4e-14
Identities = 60/217 (27%), Positives = 101/217 (46%), Gaps = 32/217 (14%)
Query: 704 LALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQV---------KWLRTQIGMV 754
L +VG SG GK+T+ I P G +T D + + + LRT+ G V
Sbjct: 35 LGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFV 94
Query: 755 GQEPILFATSILENVLMGKENATMKEAVAACKA-------ASAHSFISELPLGYDTQVGD 807
Q P + V G + E + A A A A ++ E+ + D ++ D
Sbjct: 95 HQNP---RDGLRMQVSAG---GNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLD-RIDD 147
Query: 808 RGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKI-----SVGRT 862
SGG +QR+ +AR ++ PR++ +DEPT LD S+ + +D + +G
Sbjct: 148 LPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDV---SVQARLLDLLRGLVRELGLA 204
Query: 863 TIVIAHRLATVK-NANTIVVLDQGSVVEIGNHRQLLE 898
+++ H LA + A+ ++V+ QG VVE G ++L+
Sbjct: 205 VVIVTHDLAVARLLADRLMVMKQGQVVESGLTDRVLD 241
|
Length = 258 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 73.7 bits (181), Expect = 5e-14
Identities = 69/263 (26%), Positives = 119/263 (45%), Gaps = 61/263 (23%)
Query: 679 TFAYPS---RPETV-ILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITL 734
TF Y + R +TV ++ L+ + +TLA++G +G GKST+ ++ +PT G + +
Sbjct: 13 TFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLI 72
Query: 735 DGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFI 794
D H L + +I M+ Q+P +TS+ + + I
Sbjct: 73 DDHPLHFGDYSYRSQRIRMIFQDP---STSLNPRQRISQ--------------------I 109
Query: 795 SELPLGYDT----------------QVGDRGTQ-------LSGGQKQRIALARAMIKDPR 831
+ PL +T QVG L+ GQKQR+ LARA+I P+
Sbjct: 110 LDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPK 169
Query: 832 ILLLDEPTSALDSESESIVQQAIDKI-----SVGRTTIVIAHRLATVKN-ANTIVVLDQG 885
+++ DE ++LD S+ Q I+ + G + I + L +K+ ++ ++V+ QG
Sbjct: 170 VIIADEALASLDM---SMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQG 226
Query: 886 SVVEIGNHRQLLERGGAYHDLVK 908
VVE G+ +L H+L K
Sbjct: 227 EVVERGSTADVL--ASPLHELTK 247
|
Length = 267 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 5e-14
Identities = 52/217 (23%), Positives = 95/217 (43%), Gaps = 34/217 (15%)
Query: 691 LRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQ 750
L L+L + + ++G +G GK+T+ +I P +G + G DL Q
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDL----TGLPEHQ 73
Query: 751 IGMVG-----QEPILF-ATSILEN-------------VLMGKENATMKEAVAACKAASAH 791
I G Q+P +F ++ EN L + +A K+ +
Sbjct: 74 IARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEE------- 126
Query: 792 SFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQ 851
+ E +G + LS GQKQ + + +++DP++LLLDEP + + E
Sbjct: 127 --VLET-IGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTA 183
Query: 852 QAIDKISVGRTTIVIAHRLATVKN-ANTIVVLDQGSV 887
+ + ++ + +V+ H + V++ A+ + VL QGSV
Sbjct: 184 ELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSV 220
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.0 bits (179), Expect = 5e-14
Identities = 72/231 (31%), Positives = 115/231 (49%), Gaps = 28/231 (12%)
Query: 691 LRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQV-KWLRT 749
L ++L I + + L+G +G GK+T+ + T G I DG D+ Q K +R
Sbjct: 21 LHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMRE 80
Query: 750 QIGMVGQEPILFA-TSILENVLMGKENATMKEAVAACKAASAHSFISEL-PLGYDTQVGD 807
+ +V + +F+ ++ EN+ MG A + K + EL P ++ ++
Sbjct: 81 AVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKW------VYELFPRLHERRIQR 134
Query: 808 RGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRT---TI 864
GT +SGG++Q +A+ RA++ PR+LLLDEP+ L + I+QQ D I R TI
Sbjct: 135 AGT-MSGGEQQMLAIGRALMSQPRLLLLDEPSLGL---APIIIQQIFDTIEQLREQGMTI 190
Query: 865 VIAHRLATVKNANTIVVL-DQGSVVEIGNHRQLLERGGAYHDLVKLASEAV 914
+ +NAN + L D+G V+E N +LE G LA+EAV
Sbjct: 191 FLVE-----QNANQALKLADRGYVLE--NGHVVLEDTGD----ALLANEAV 230
|
Length = 237 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 74.4 bits (183), Expect = 6e-14
Identities = 64/261 (24%), Positives = 118/261 (45%), Gaps = 42/261 (16%)
Query: 672 KIEFKGVTFAYPSRPETVI--LRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYD--- 726
+I+ K + + + T + L ++++ I + +A++G +G GK+T IE
Sbjct: 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTT---FIEHLNALLL 58
Query: 727 PTKGLITL---DGHDLKSL---------------------QVKWLRTQIGMVGQ--EPIL 760
P G I D + K ++K +R ++G+V Q E L
Sbjct: 59 PDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQL 118
Query: 761 FATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGT-QLSGGQKQR 819
F +I ++++ G + + + A +AA EL +G D R +LSGGQK+R
Sbjct: 119 FEQTIEKDIIFGPVSMGVSKEEAKKRAAK----YIEL-VGLDESYLQRSPFELSGGQKRR 173
Query: 820 IALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKI-SVGRTTIVIAHRLATV-KNAN 877
+ALA + +P L+ DEPT+ LD + + + D + G+T I++ H L V +
Sbjct: 174 VALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTK 233
Query: 878 TIVVLDQGSVVEIGNHRQLLE 898
+ G +++ G+ +L
Sbjct: 234 RTIFFKDGKIIKDGDTYDILS 254
|
Length = 305 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 72.6 bits (178), Expect = 6e-14
Identities = 61/205 (29%), Positives = 90/205 (43%), Gaps = 22/205 (10%)
Query: 704 LALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIGMVGQE------ 757
L L+G +G GK+T+ I P KG + + G IG V Q
Sbjct: 9 LGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKG-----WRHIGYVPQRHEFAWD 63
Query: 758 -PILFATSILENV--LMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSG 814
PI A +++ +G AA + A ++EL D VG +LSG
Sbjct: 64 FPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELA---DRPVG----ELSG 116
Query: 815 GQKQRIALARAMIKDPRILLLDEPTSALDSES-ESIVQQAIDKISVGRTTIVIAHRLATV 873
GQ+QR+ +ARA+ P +LLLDEP + LD + E + + I+ G ++ H LA
Sbjct: 117 GQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQA 176
Query: 874 KNANTIVVLDQGSVVEIGNHRQLLE 898
VVL G V+ G +QL +
Sbjct: 177 MATCDRVVLLNGRVIADGTPQQLQD 201
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 7e-14
Identities = 50/187 (26%), Positives = 92/187 (49%), Gaps = 10/187 (5%)
Query: 671 GKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKG 730
+ + + +Y R ++ ++L + S + + L+G +G GK+T F +I P G
Sbjct: 3 STLVAENLAKSYKKRK---VVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSG 59
Query: 731 LITLDGHDLKSLQV-KWLRTQIGMVGQEPILF-ATSILENVLMGKENATMKEAVAACKAA 788
I LD D+ L + K R IG + QE +F ++ +N++ E A K
Sbjct: 60 KILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEE 119
Query: 789 SAHSFISELPLGYDTQVGDR-GTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESE 847
+ + E + T + D LSGG+++R+ +ARA+ +P+ +LLDEP + +D +
Sbjct: 120 -LDALLEEFHI---THLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAV 175
Query: 848 SIVQQAI 854
+Q+ I
Sbjct: 176 IDIQRII 182
|
Length = 243 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.3 bits (185), Expect = 1e-13
Identities = 67/220 (30%), Positives = 106/220 (48%), Gaps = 40/220 (18%)
Query: 702 KTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSL---QVKWLRTQIGMVGQEP 758
+TL+LVG SG GKST + R + G I +G + +L +++ LR I + Q+P
Sbjct: 351 ETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDP 410
Query: 759 ILFAT---------SILE-----NVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQ 804
+A+ SI+E +L GK AA + A + LP
Sbjct: 411 --YASLDPRQTVGDSIMEPLRVHGLLPGKA--------AAARVAWLLERVGLLP----EH 456
Query: 805 VGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKI-----SV 859
+ SGGQ+QRI +ARA+ +P++++ DE SALD SI Q I+ +
Sbjct: 457 AWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDV---SIRGQIINLLLDLQRDF 513
Query: 860 GRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLE 898
G + I+H +A V+ ++ + V+ G +VEIG R + E
Sbjct: 514 GIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFE 553
|
Length = 623 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 1e-13
Identities = 57/206 (27%), Positives = 105/206 (50%), Gaps = 17/206 (8%)
Query: 689 VILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQ-VKWL 747
+L+ ++ + + + AL+G +G GKST+ +I P G + + G+ L K
Sbjct: 25 EVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAH 84
Query: 748 RTQIGMVGQEPILFAT-SILENVLMG--KENATMKEAVAACKAASAHSFISELPLGYDTQ 804
+ I +V QEP+LF S+ EN+L G K A+M++ A L D+
Sbjct: 85 QLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQ-------LDLDSS 137
Query: 805 VGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALD-SESESIVQQAIDKISVGRTT 863
G L +Q + + R +++D RIL+LDEPT++L +E+E + + + ++ G
Sbjct: 138 AG----SLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGI 193
Query: 864 IVIAHRLATVKN-ANTIVVLDQGSVV 888
+ I+H+L ++ A+ I V+ G++
Sbjct: 194 VFISHKLPEIRQLADRISVMRDGTIA 219
|
Length = 510 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 75.2 bits (185), Expect = 1e-13
Identities = 60/226 (26%), Positives = 113/226 (50%), Gaps = 23/226 (10%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPN---Q 1370
+E+K + T+ V L L+V+ G V L G +G+GKST++ ++ Y P+
Sbjct: 2 LEMKGIVKTFGG---VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVY-PHGTWD 57
Query: 1371 GKVMIEGVDLREINVKWL-RKQTALVGQEPALFAG-TIRDNIALGN------PKASWAEI 1422
G++ G L+ N++ R ++ QE L ++ +NI LGN + ++ +
Sbjct: 58 GEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAM 117
Query: 1423 EEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSA 1482
A+ + + VG+ G GGQ+Q + IA+A+ K +R+L+LDE SS+
Sbjct: 118 YLRAKNLLRELQLDADNV--TRPVGDYG----GGQQQLVEIAKALNKQARLLILDEPSSS 171
Query: 1483 LDLESEKHVQDALRKVSKRATT-IVVAHRLSTIRE-ANMIAVVRDG 1526
L + + + D +R + + ++H+L+ ++ + I V+RDG
Sbjct: 172 LTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDG 217
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 74.7 bits (184), Expect = 2e-13
Identities = 71/261 (27%), Positives = 113/261 (43%), Gaps = 46/261 (17%)
Query: 694 LNLVIPSSKTLALVGTSGGGKS-TVFALIERFYDP----TKGLITLDGHDLKSLQVKWLR 748
++L I + +TLALVG SG GKS T +++ P G I G L + LR
Sbjct: 28 VSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLR 87
Query: 749 ----TQIGMVGQEPILFATSI------LENVL-----MGKENATMK-----EAVAACKAA 788
+I M+ QEP++ + L VL M +E A + + V +AA
Sbjct: 88 GVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAA 147
Query: 789 SAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESES 848
++ D QLSGG++QR+ +A A++ P +L+ DEPT+ALD ++
Sbjct: 148 K--------------RLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQA 193
Query: 849 IVQQAID--KISVGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLERGGAYHD 905
+ Q + + + + I H L+ V+ A+ + V+ G VE L H
Sbjct: 194 QILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRAATLFSA--PTHP 251
Query: 906 LVK--LASEAVSQPQSKQKDA 924
+ L SE P + A
Sbjct: 252 YTQKLLNSEPSGDPVPLPEPA 272
|
Length = 529 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 2e-13
Identities = 58/215 (26%), Positives = 108/215 (50%), Gaps = 19/215 (8%)
Query: 1332 LKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEG-VDLREINVKWLRK 1390
L D V G + L+G +G+GK+T++ +I P +G+V+ +G DL K
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLT----KLPEH 76
Query: 1391 QTALVG-----QEPALFAG-TIRDN--IALGNPKASWAEI---EEAAEEAYIHKFISSLP 1439
+ A G Q+P +F T+R+N +AL K+ +A + A E I + ++++
Sbjct: 77 RIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATI- 135
Query: 1440 QGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVS 1499
G + LS GQKQ + I + + ++LLLDE + + + + L+ ++
Sbjct: 136 -GLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLA 194
Query: 1500 KRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGS 1533
+ + +VV H + +RE A+ + V+ +G+V+ GS
Sbjct: 195 GKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGS 229
|
Length = 249 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.8 bits (176), Expect = 2e-13
Identities = 70/248 (28%), Positives = 117/248 (47%), Gaps = 29/248 (11%)
Query: 1330 TVLKDFCLKVKGGSMVALVGGSGSGKSTVI-WLIQRFYDPN-------QGKVMIEGVDLR 1381
+L+D L+++ G + AL+G +G+GKST++ L G V + G L
Sbjct: 15 AILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLA 74
Query: 1382 EINVKWLRKQTALVGQ--EPALFAGTIRDNIALGN-PKASWAEIEEAAEEAYIHKFISSL 1438
I+ L + A++ Q +PA FA + R+ + LG P A A + + ++
Sbjct: 75 AIDAPRLARLRAVLPQAAQPA-FAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALAL- 132
Query: 1439 PQGYETQVGESGVQLSGGQKQRIAIARAILK---------GSRVLLLDEASSALDLESEK 1489
G VG LSGG+ R+ AR + + R LLLDE ++ALDL +
Sbjct: 133 -AGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQH 191
Query: 1490 HVQDALRKVSKR----ATTIVVAHRLSTIREANMIAVVRDGAVVEYGS-HETLLASHLNG 1544
+ D +R++++ IV L+ R A+ IA++ DGA+V +G+ + L +H+
Sbjct: 192 RLLDTVRRLARDWNLGVLAIVHDPNLAA-RHADRIAMLADGAIVAHGAPADVLTPAHIAR 250
Query: 1545 VYASLVRA 1552
Y VR
Sbjct: 251 CYGFAVRL 258
|
Length = 272 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 74.6 bits (183), Expect = 2e-13
Identities = 109/496 (21%), Positives = 187/496 (37%), Gaps = 50/496 (10%)
Query: 419 VGERSAQRIRTKYLRAVLRQDIAFFDTEVSTSDIMHGISSDIAQIQEVMGEKVAHFAHNI 478
G +R +L I D +++ ++ DI QI +
Sbjct: 80 AGMHIIANLRIALCEKILGAPIEEID-RRGAHNLIPLLTHDIDQINAFLFIFPPIAIALA 138
Query: 479 FTFICGYTVGFLRSW-----KVSLVVLSVTPLMMFCGMAYKAVYVG---LTSKEEASYRR 530
F C + +L S +S +++ ++ +K + + E ++
Sbjct: 139 IFFFCIAYLAYL-SVPMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAI 197
Query: 531 AGSVAEQAISSIRTV-FSFVAEDHFAVRYAGLLADSIPFGAKLGFAKGAG-MGVIYLVTY 588
A E I IR + F+ A A A L I A+ G + L+
Sbjct: 198 AFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILI---FIAAENFGQLLFFLLIGC 254
Query: 589 ATWALAFWYGSILVARKELSGGAAIACFFGVNVGGRG-LALSLSYFAQFAQGTVAATRVF 647
A +A A + AAI+ F + +G L + +S AQ +A R+
Sbjct: 255 ALFAAAMF---------ASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLA 305
Query: 648 EIIDRV--PEIDPYNSEGRKLSSVS-----GKIEFKGVTFAYPS--RPETVILRSLNLVI 698
+ +R PE + S+ + ++ IE K V + E L ++L I
Sbjct: 306 DFGERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRI 365
Query: 699 PSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIGMVGQEP 758
+ +VG +G GKST+ L Y P +G I LDG + + R +
Sbjct: 366 AQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAI---- 421
Query: 759 ILFATSILENVLMG---KENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGG 815
FA L + L+G E+A++ A + + G+ T T LS G
Sbjct: 422 --FADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTT-----TALSTG 474
Query: 816 QKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAI--DKISVGRTTIVIAHRLATV 873
Q++R+AL A ++D ILL DE + D + + + D G+T I+I+H
Sbjct: 475 QQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYF 534
Query: 874 KNANTIVVLDQGSVVE 889
+ A+ I+ L G +V+
Sbjct: 535 ELADQIIKLAAGCIVK 550
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 3e-13
Identities = 56/264 (21%), Positives = 100/264 (37%), Gaps = 49/264 (18%)
Query: 627 ALSL--SYFAQFAQGTVAATRVFEIID-----RVPEIDPYNSEGR--KLSSVSGKIEFKG 677
+LS + A R+ E ++ P + R + I +
Sbjct: 338 SLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLEN 397
Query: 678 VTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGH 737
++ P +L LN + + L + G SG GK+++ + +
Sbjct: 398 LSLRTPD--GQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWP----------- 444
Query: 738 DLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSF---- 793
W +I M +LF + + + T++EA+ C +A F
Sbjct: 445 --------WGSGRISMPADSALLF---LPQRPYLP--QGTLREAL--CYPNAAPDFSDAE 489
Query: 794 ----ISELPLGYDT----QVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSE 845
+ ++ LG + LSGG++QR+A AR ++ P+ + LDE TSALD E
Sbjct: 490 LVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEE 549
Query: 846 SESIVQQAIDKISVGRTTIVIAHR 869
+E + Q + + T I + HR
Sbjct: 550 TEDRLYQLLKEELPDATVISVGHR 573
|
Length = 604 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 3e-13
Identities = 70/246 (28%), Positives = 105/246 (42%), Gaps = 44/246 (17%)
Query: 684 SRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVF-ALIERFYDPT-------KGLITLD 735
+R ILR L+L I + AL+G +G GKST+ AL G +TL+
Sbjct: 10 ARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLN 69
Query: 736 GHDLKSL---QVKWLRTQIGMVGQEPILFATSILENVLMGK--------ENATMKEAVAA 784
G L ++ ++ LR + Q FA S E VL+G+ +A
Sbjct: 70 GEPLAAIDAPRLARLRAVLPQAAQPA--FAFSAREIVLLGRYPHARRAGALTHRDGEIAW 127
Query: 785 CKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAM---------IKDPRILLL 835
A A G VG T LSGG+ R+ AR + + PR LLL
Sbjct: 128 QALALA---------GATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLL 178
Query: 836 DEPTSALDSESESIVQQAIDKIS----VGRTTIVIAHRLATVKNANTIVVLDQGSVVEIG 891
DEPT+ALD + + + +++ +G IV LA ++A+ I +L G++V G
Sbjct: 179 DEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAA-RHADRIAMLADGAIVAHG 237
Query: 892 NHRQLL 897
+L
Sbjct: 238 APADVL 243
|
Length = 272 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 3e-13
Identities = 51/190 (26%), Positives = 88/190 (46%), Gaps = 22/190 (11%)
Query: 684 SRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQ 743
SR E ++ L+ + + + L + G +G GK+T+ ++ P G + +G L +
Sbjct: 9 SRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR 68
Query: 744 VKWLRTQIGMVGQEPILFAT-SILENV-----LMGKENATMKEAVAACKAASAHSFISEL 797
+ R I +G P L S LEN+ + G T+++A+AA +L
Sbjct: 69 DEPHR-NILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTG----FEDL 123
Query: 798 PLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKI 857
P QLS GQ++R+ALAR + + +LDEPT+ALD +++ +
Sbjct: 124 PAA----------QLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRA- 172
Query: 858 SVGRTTIVIA 867
+ R IV+
Sbjct: 173 HLARGGIVLL 182
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 70.3 bits (173), Expect = 3e-13
Identities = 50/209 (23%), Positives = 90/209 (43%), Gaps = 34/209 (16%)
Query: 1326 RPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINV 1385
R + + G + L G +GSGK+T++ LI P G + ++G D+ + +V
Sbjct: 12 RGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDV 71
Query: 1386 KWLRKQTALVGQ----EPALFAGTIRDNIALGNPKASWAEI---EEAAEEAYIHKF---- 1434
+ +G +PAL T+ +N+ WA EE A +
Sbjct: 72 ---AEACHYLGHRNAMKPAL---TVAENLEF------WAAFLGGEELDIAAALEAVGLAP 119
Query: 1435 ISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDA 1494
++ LP GY LS GQK+R+A+AR ++ + +LDE ++ALD + +
Sbjct: 120 LAHLPFGY----------LSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAEL 169
Query: 1495 LRKVSKRATTIVVA-HRLSTIREANMIAV 1522
+R + ++ A H + A + +
Sbjct: 170 IRAHLAQGGIVIAATHIPLGLPGARELDL 198
|
Length = 207 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 69.5 bits (171), Expect = 4e-13
Identities = 51/172 (29%), Positives = 83/172 (48%), Gaps = 15/172 (8%)
Query: 685 RPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQV 744
R V+ L+ + + + L L G +G GK+T+ LI P G I LDG D+ V
Sbjct: 12 RGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDV 71
Query: 745 KWLRTQIGMVG-QEPILFATSILENVLMGKE-NATMKEAVAACKAASAHSFISELPLGYD 802
+G + + A ++ EN+ + +AA A + ++ LP GY
Sbjct: 72 ---AEACHYLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGY- 127
Query: 803 TQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAI 854
LS GQK+R+ALAR ++ + I +LDEPT+ALD+ + ++ + I
Sbjct: 128 ---------LSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELI 170
|
Length = 207 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 69.5 bits (170), Expect = 5e-13
Identities = 43/171 (25%), Positives = 73/171 (42%), Gaps = 30/171 (17%)
Query: 1327 PEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPN---QGKVMIEGVDLREI 1383
P +L + + G +V L+G SG GKST++ + G++ + L +
Sbjct: 13 PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDML 72
Query: 1384 NVKWLRKQTALVGQEPALFAG-TIRDNIALGNP---------KASWAEIEEAAEEAYIHK 1433
++Q ++ Q+ LF ++ N+ P A+ A +E + + H+
Sbjct: 73 PAA--QRQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQ 130
Query: 1434 FISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALD 1484
P LSGGQ+ R+A+ RA+L + LLLDE S LD
Sbjct: 131 D----PA-----------TLSGGQRARVALLRALLAQPKALLLDEPFSRLD 166
|
Length = 213 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 72.9 bits (179), Expect = 6e-13
Identities = 65/273 (23%), Positives = 120/273 (43%), Gaps = 60/273 (21%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERF--YDPTKG 730
IE K +T + + +L++++ I + L ++G SG GKS + ++ Y+PT G
Sbjct: 1 IEVKNLTKKFDGK---EVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSG 57
Query: 731 LITLD-----------------------GHDLKSLQVK-W---------LRTQIGMVGQE 757
I G L+ +V W +R +I ++ Q
Sbjct: 58 RIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQR 117
Query: 758 PILFA----TSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQ-- 811
FA ++L+NVL E + A +A + L Q+ R T
Sbjct: 118 T--FALYGDDTVLDNVLEALEEIGYEGKEAVGRA---------VDLIEMVQLSHRITHIA 166
Query: 812 --LSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDK--ISVGRTTIVIA 867
LSGG+KQR+ LAR + K+P + L DEPT LD ++ +V A+++ + G + ++ +
Sbjct: 167 RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTS 226
Query: 868 HRLATVKN-ANTIVVLDQGSVVEIGNHRQLLER 899
H +++ ++ + L+ G + E G +++
Sbjct: 227 HWPEVIEDLSDKAIWLENGEIKEEGTPDEVVAV 259
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 69.5 bits (170), Expect = 7e-13
Identities = 55/183 (30%), Positives = 93/183 (50%), Gaps = 12/183 (6%)
Query: 1342 GSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVD---LREINVKWLRKQTALVGQE 1398
G M L G SG+GKST++ LI P+ GK+ G D L+ V +LR+Q ++ Q+
Sbjct: 28 GEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQD 87
Query: 1399 PALFAG-TIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQ-GYETQVGESGVQLSGG 1456
L T+ DN+A+ P I A+ + + ++L + G + +QLSGG
Sbjct: 88 HHLLMDRTVYDNVAI--PLI----IAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGG 141
Query: 1457 QKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVA-HRLSTIR 1515
++QR+ IARA++ VLL DE + LD + + + ++ T+++A H + I
Sbjct: 142 EQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLIS 201
Query: 1516 EAN 1518
+
Sbjct: 202 RRS 204
|
Length = 222 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.3 bits (172), Expect = 7e-13
Identities = 68/233 (29%), Positives = 112/233 (48%), Gaps = 30/233 (12%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
I VT + R LR + +P ALVG +G GKST+F + F G I
Sbjct: 7 IVVNDVTVTW--RNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKI 64
Query: 733 TLDGHDL-KSLQVKWLRTQIGMVGQ-EPILFATSIL-ENVLMGKENATM-------KEAV 782
++ G ++LQ + + V Q E + ++ +L E+V+M M K
Sbjct: 65 SILGQPTRQALQ----KNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDR 120
Query: 783 AACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSAL 842
AA A + E Q+G +LSGGQK+R+ LARA+ + +++LLDEP + +
Sbjct: 121 QIVTAALARVDMVEF---RHRQIG----ELSGGQKKRVFLARAIAQQGQVILLDEPFTGV 173
Query: 843 DSESE----SIVQQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIG 891
D ++E S++++ D+ G+T +V H L +V V+ +G+V+ G
Sbjct: 174 DVKTEARIISLLRELRDE---GKTMLVSTHNLGSVTEFCDYTVMVKGTVLASG 223
|
Length = 272 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 1e-12
Identities = 67/223 (30%), Positives = 116/223 (52%), Gaps = 19/223 (8%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPT---K 729
+E K +T + L +++L + + + ++L G +G GKST+ ++ Y P +
Sbjct: 6 LEMKNITKTFGG---VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVY-PHGTYE 61
Query: 730 GLITLDGHDLKSLQVKWL-RTQIGMVGQEPILFAT-SILENVLMGKENATMKEAVAACKA 787
G I +G +L++ ++ R I ++ QE L S+LEN+ +G E
Sbjct: 62 GEIIFEGEELQASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMY 121
Query: 788 ASAHSFISELPLGYD--TQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSE 845
A +++L L + T VG+ L GQ+Q + +A+A+ K R+L+LDEPT++L +E
Sbjct: 122 LRAQKLLAQLKLDINPATPVGN----LGLGQQQLVEIAKALNKQARLLILDEPTASL-TE 176
Query: 846 SESIVQQAI--DKISVGRTTIVIAHRLATVKN-ANTIVVLDQG 885
SE+ V I D + G I I+H+L VK ++TI V+ G
Sbjct: 177 SETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDG 219
|
Length = 506 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 1e-12
Identities = 55/217 (25%), Positives = 116/217 (53%), Gaps = 10/217 (4%)
Query: 1328 EVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREI-NVK 1386
++ L + L + G +V L+G +G+GK+T++ + G+++ +G D+ + K
Sbjct: 17 KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAK 76
Query: 1387 WLRKQTALVGQEPALFAG-TIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQ 1445
+R+ A+V + +F+ T+ +N+A+G A + +E + Y P+ +E +
Sbjct: 77 IMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVY-----ELFPRLHERR 131
Query: 1446 VGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTI 1505
+ +G +SGG++Q +AI RA++ R+LLLDE S L + + D + ++ ++ TI
Sbjct: 132 IQRAGT-MSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTI 190
Query: 1506 VVAHRLS--TIREANMIAVVRDGAVVEYGSHETLLAS 1540
+ + + ++ A+ V+ +G VV + + LLA+
Sbjct: 191 FLVEQNANQALKLADRGYVLENGHVVLEDTGDALLAN 227
|
Length = 237 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 1e-12
Identities = 44/204 (21%), Positives = 82/204 (40%), Gaps = 13/204 (6%)
Query: 1325 SRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREIN 1384
R + + G + + G +GSGK+T++ ++ P G+V++ G L
Sbjct: 9 ERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR 68
Query: 1385 VKWLRKQTALVGQEPALFAG-TIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYE 1443
R +G P + ++ +N+ + S ++EEA ++ F P
Sbjct: 69 DSIAR-GLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGF-EDRPVA-- 124
Query: 1444 TQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRAT 1503
QLS GQ++R+A+AR +L G + +LDE ++ALD +A+ R
Sbjct: 125 --------QLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGG 176
Query: 1504 TIVVAHRLSTIREANMIAVVRDGA 1527
+V+ + G
Sbjct: 177 MVVLTTHQDLGLSEAGARELDLGF 200
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 1e-12
Identities = 49/157 (31%), Positives = 75/157 (47%), Gaps = 20/157 (12%)
Query: 694 LNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDL-KSLQVKWLRTQ-- 750
+NL +P+ A+ G SG GK+++ I P KG I L+G L + + L +
Sbjct: 17 VNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKR 76
Query: 751 -IGMVGQEPILFA-TSILENVLMGKENATMKEAVAACKAASAHSF--ISELPLGYDTQVG 806
IG V Q+ LF + N+ G + F I L LG + +
Sbjct: 77 RIGYVFQDARLFPHYKVRGNLRYG------------MAKSMVAQFDKIVAL-LGIEPLLD 123
Query: 807 DRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALD 843
LSGG+KQR+A+ RA++ P +LL+DEP ++LD
Sbjct: 124 RYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
Length = 352 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 1e-12
Identities = 50/204 (24%), Positives = 88/204 (43%), Gaps = 42/204 (20%)
Query: 704 LALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDL--KSLQVKWLRTQIG--------- 752
+ +G +G GKST +I + P G + + G D+ +V + IG
Sbjct: 31 VGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEV---QRNIGYLPEHNPLY 87
Query: 753 --MVGQEPILFATSILENVLMGKENATMKEAVAACKA-----ASAHSFISELPLGYDTQV 805
M +E + F I G + +K+ V H I +L GY
Sbjct: 88 LDMYVREYLQFIAGI-----YGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGY---- 138
Query: 806 GDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIV 865
+QR+ LA+A+I DP++L+LDEPT+ LD ++ I I +T I+
Sbjct: 139 -----------RQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIIL 187
Query: 866 IAHRLATVKN-ANTIVVLDQGSVV 888
H + V+ + ++++++G +V
Sbjct: 188 STHIMQEVEAICDRVIIINKGKIV 211
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 2e-12
Identities = 59/248 (23%), Positives = 117/248 (47%), Gaps = 27/248 (10%)
Query: 1320 TFTYPS----RPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMI 1375
TF Y + R V +K ++ G +A++G +GSGKST+ ++ +P G+++I
Sbjct: 13 TFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILI 72
Query: 1376 EGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKASWAEIEEA--------AE 1427
L + + K+ ++ Q+P N +L NP+ +I +
Sbjct: 73 NDHPLHFGDYSFRSKRIRMIFQDP---------NTSL-NPRLRIGQILDFPLRLNTDLEP 122
Query: 1428 EAYIHKFISSLPQG--YETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDL 1485
E + +L L+ GQKQR+A+ARA++ ++++ DEA ++LD+
Sbjct: 123 EQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDM 182
Query: 1486 ESEKHVQDALRKVSKR--ATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLASHL 1542
+ + + ++ ++ + I V + I+ ++ + V+ +G VVE GS +LAS L
Sbjct: 183 SMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVLASPL 242
Query: 1543 NGVYASLV 1550
+ + L+
Sbjct: 243 HELTKRLI 250
|
Length = 267 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 2e-12
Identities = 48/193 (24%), Positives = 93/193 (48%), Gaps = 22/193 (11%)
Query: 1326 RPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLI---QRFYDPNQGKVMIEGVDLRE 1382
+L D L V+ G ++A++G SGSGK+T++ I G+++ G +
Sbjct: 17 NKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNG---QP 73
Query: 1383 INVKWLRKQTALVGQEPALFAG-TIRD------NIALGNPKASWAEIEEAAEEAYIHKFI 1435
+K A V Q+ L G T+R+ + L + A ++ E
Sbjct: 74 RKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSD-AIRKKRVE-------D 125
Query: 1436 SSLPQGYETQVGESGVQ-LSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDA 1494
L T++G + V+ +SGG+++R++IA +L +VL+LDE +S LD + ++
Sbjct: 126 VLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVST 185
Query: 1495 LRKVSKRATTIVV 1507
L ++++R +++
Sbjct: 186 LSQLARRNRIVIL 198
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.3 bits (173), Expect = 2e-12
Identities = 62/223 (27%), Positives = 107/223 (47%), Gaps = 23/223 (10%)
Query: 1332 LKDFCLKVK----GGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEG---VDLRE-I 1383
L D CL V + A+ G SG+GK+++I I P +G++++ G D + I
Sbjct: 10 LGDLCLTVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGI 69
Query: 1384 NVKWLRKQTALVGQEPALFAG-TIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGY 1442
+ +++ V Q+ LF +R N+ G K+ A+ ++ I + P
Sbjct: 70 CLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYP--- 126
Query: 1443 ETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRA 1502
LSGG+KQR+AI RA+L +LL+DE ++LDL ++ + L ++++
Sbjct: 127 --------GSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREI 178
Query: 1503 TT--IVVAHRLSTI-REANMIAVVRDGAVVEYGSHETLLASHL 1542
+ V+H L I R A+ + V+ G V +G E + AS
Sbjct: 179 NIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASSA 221
|
Length = 352 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 2e-12
Identities = 87/348 (25%), Positives = 145/348 (41%), Gaps = 86/348 (24%)
Query: 676 KGVTFAYPSRPETVILRSLNL-VIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITL 734
V+ P P+ IL+ ++L P +K + ++G +G GKST+ L +
Sbjct: 8 NRVSKVVP--PKKEILKDISLSFFPGAK-IGVLGLNGAGKSTL-------------LRIM 51
Query: 735 DGHDLKSLQVKWLR--TQIGMVGQEPILFAT-SILENVLMG------------------- 772
G D + ++G + QEP L T ++ ENV G
Sbjct: 52 AGVDKEFNGEARPAPGIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFA 111
Query: 773 ----------KENATMKEAVAACKAASAHSFIS------ELPLGYDTQVGDRGTQLSGGQ 816
E A ++E + A A + P D V T+LSGG+
Sbjct: 112 EPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPW-DADV----TKLSGGE 166
Query: 817 KQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKN- 875
++R+AL R ++ P +LLLDEPT+ LD+ES + ++Q + + G T + + H + N
Sbjct: 167 RRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYP-G-TVVAVTHDRYFLDNV 224
Query: 876 ANTIVVLDQGSVVEI-GNHRQLLERGGAYHDLVKLASEAVSQPQSKQKDAKRGIEFSIYE 934
A I+ LD+G + GN+ LE+ +L E + ++QK KR +E+
Sbjct: 225 AGWILELDRGRGIPWEGNYSSWLEQKEK-----RLEQEE-KEESARQKALKRELEW---- 274
Query: 935 KSVIEVSRSRYANEVSKSKYFKSMQAEIQTVEEEQQKPRPRKFQLSEI 982
RS +KSK A + EE + ++ + +EI
Sbjct: 275 ------VRSSPKARQAKSK------ARLARYEELLSQEFQKRNETAEI 310
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.9 bits (168), Expect = 2e-12
Identities = 60/224 (26%), Positives = 113/224 (50%), Gaps = 19/224 (8%)
Query: 1330 TVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLR 1389
TV ++ +++ G A++G +G GKST++ + R P G V ++G ++ K +
Sbjct: 21 TVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVA 80
Query: 1390 KQTALVGQEPALFAG--TIRDNIALGN-PK----ASW-AEIEEAAEEAYIHKFISSLPQG 1441
++ L+ Q A G T+++ +A G P W E EEA +A I+ L
Sbjct: 81 RRIGLLAQN-ATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHL--- 136
Query: 1442 YETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKR 1501
+S LSGGQ+QR IA + + + ++LLDE ++ LD+ + + + L ++++
Sbjct: 137 ----ADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNRE 192
Query: 1502 A--TTIVVAHRLS-TIREANMIAVVRDGAVVEYGSHETLLASHL 1542
T V H L+ R A+ + +R+G +V G+ + ++ + L
Sbjct: 193 KGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVTAEL 236
|
Length = 265 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 3e-12
Identities = 64/225 (28%), Positives = 98/225 (43%), Gaps = 48/225 (21%)
Query: 1342 GSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREIN---VKWLRKQTALVGQE 1398
G +A+VG SG GKST+ L+ P G++ +G DL + + K LR++ +V Q
Sbjct: 41 GKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQN 100
Query: 1399 PALFA--------GTIRDNIALGNPKASWAEIEEAAEEA-------------YIHKFISS 1437
P + G I + L N S AE E A Y H F
Sbjct: 101 P--YGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMF--- 155
Query: 1438 LPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRK 1497
SGGQ+QRIAIARA++ V++ DE SALD+ + V + +
Sbjct: 156 ----------------SGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMD 199
Query: 1498 VSKRATT--IVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLA 1539
+ + + ++H LS + A+ + V+ G VE G+ E +
Sbjct: 200 LQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQIFN 244
|
Length = 327 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 3e-12
Identities = 64/222 (28%), Positives = 104/222 (46%), Gaps = 31/222 (13%)
Query: 695 NLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI---TLDGH-DLKSLQVKWLR-- 748
+L I + L+G SG GKST+ + ++G + DG D+ + LR
Sbjct: 44 SLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATLRRL 103
Query: 749 --TQIGMVGQEPILFA----TSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYD 802
++ MV Q+ FA ++ ENV G E M +A + +L L
Sbjct: 104 RTHRVSMVFQQ---FALLPWRTVEENVAFGLEMQGMPKAERRKRVDE------QLELVGL 154
Query: 803 TQVGDRGT-QLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKI---- 857
Q DR +LSGG +QR+ LARA + ILL+DEP SALD I Q D++
Sbjct: 155 AQWADRKPGELSGGMQQRVGLARAFATEAPILLMDEPFSALDP---LIRTQLQDELLELQ 211
Query: 858 -SVGRTTIVIAHRL-ATVKNANTIVVLDQGSVVEIGNHRQLL 897
+ +T + ++H L +K N I +++ G +++ G +++
Sbjct: 212 SKLKKTIVFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIV 253
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 3e-12
Identities = 57/218 (26%), Positives = 108/218 (49%), Gaps = 18/218 (8%)
Query: 1332 LKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQ 1391
L D L V G + ++G +G+GK+T++ +I P++G V+ G DL Q
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLT----GLPEHQ 73
Query: 1392 TALVG-----QEPALFAG-TIRDN--IALGNPKASWAEIEE---AAEEAYIHKFISSLPQ 1440
A G Q+P +F T+ +N +AL K+ +A + A E+ I + + ++
Sbjct: 74 IARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETI-- 131
Query: 1441 GYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSK 1500
G + LS GQKQ + I +++ ++LLLDE + + E + + L+ ++
Sbjct: 132 GLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG 191
Query: 1501 RATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETL 1537
+ + +VV H + +R A+ + V+ G+V+ GS + +
Sbjct: 192 KHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQV 229
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.5 bits (171), Expect = 3e-12
Identities = 66/221 (29%), Positives = 104/221 (47%), Gaps = 54/221 (24%)
Query: 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGK 1372
G++L+ V +Y + +V +K L V G + LVG SG GKST++ ++ G+
Sbjct: 3 GLKLQAVRKSYDGKTQV--IKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGE 60
Query: 1373 VMIEG--V-DL----REINVKWLRKQTALVGQEPALFAG-TIRDNIALG--NPKASWAEI 1422
+ I G V +L R+I A+V Q AL+ ++R+N+A G AEI
Sbjct: 61 IWIGGRVVNELEPADRDI---------AMVFQNYALYPHMSVRENMAYGLKIRGMPKAEI 111
Query: 1423 EEAAEEAY----IHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDE 1478
EE EA + + P+ +LSGGQ+QR+A+ RAI++ V L DE
Sbjct: 112 EERVAEAARILELEPLLDRKPR-----------ELSGGQRQRVAMGRAIVREPAVFLFDE 160
Query: 1479 ASSALD--------LESEKHVQDALRKVSKR--ATTIVVAH 1509
S LD LE ++++ +R T++ V H
Sbjct: 161 PLSNLDAKLRVQMRLE--------IQRLHRRLKTTSLYVTH 193
|
Length = 356 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 3e-12
Identities = 71/253 (28%), Positives = 112/253 (44%), Gaps = 57/253 (22%)
Query: 678 VTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKS-TVFALIERFYDPTKGLITLDG 736
VTF+ P T + LN + + +TL +VG SG GKS T FAL+ GL+ +G
Sbjct: 20 VTFSTPDGDVTAV-NDLNFSLRAGETLGIVGESGSGKSQTAFALM--------GLLAANG 70
Query: 737 H-------------DLKSLQVKWLRT-QIGMVGQEPILFATSI---------LENVLMGK 773
+L ++ LR QI M+ Q+P+ TS+ L VLM
Sbjct: 71 RIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPM---TSLNPYMRVGEQLMEVLMLH 127
Query: 774 ENATMKEAVA-------ACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAM 826
+ + EA A K A + P + SGG +QR+ +A A+
Sbjct: 128 KGMSKAEAFEESVRMLDAVKMPEARKRMKMYP-----------HEFSGGMRQRVMIAMAL 176
Query: 827 IKDPRILLLDEPTSALDSESESIVQQAID--KISVGRTTIVIAHRLATVKN-ANTIVVLD 883
+ P++L+ DEPT+ALD ++ + ++ K I+I H L V + ++V+
Sbjct: 177 LCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMY 236
Query: 884 QGSVVEIGNHRQL 896
G +E GN R +
Sbjct: 237 AGRTMEYGNARDV 249
|
Length = 330 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 71.6 bits (175), Expect = 3e-12
Identities = 47/180 (26%), Positives = 91/180 (50%), Gaps = 11/180 (6%)
Query: 694 LNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIGM 753
LN+ ++ A +G +G GK+T +++ PT G + + G D+++ + +R +GM
Sbjct: 949 LNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQSLGM 1007
Query: 754 VGQEPILFA-TSILENVLMGKE--NATMKEAVAACKAASAHSFISELPLGYDTQVGDRGT 810
Q ILF ++ E++L + + +EA +A + G + +
Sbjct: 1008 CPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDT-------GLHHKRNEEAQ 1060
Query: 811 QLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRL 870
LSGG ++++++A A + D ++++LDEPTS +D S + + K GRT I+ H +
Sbjct: 1061 DLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHM 1120
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 4e-12
Identities = 67/245 (27%), Positives = 110/245 (44%), Gaps = 54/245 (22%)
Query: 1330 TVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPN------QGKVMIEGVDLREI 1383
TV+ D L+++ G +ALVG SGSGKS I R P+ G + G L
Sbjct: 23 TVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLL-PSPPVVYPSGDIRFHGESLLHA 81
Query: 1384 NVKWLRK----QTALVGQEP------------------ALFAGTIRDNIALGNPKASWAE 1421
+ + LR + A++ QEP +L G R+ A+ E
Sbjct: 82 SEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRRE--------AARGE 133
Query: 1422 IEEAAEEAYIH---KFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDE 1478
I + I K ++ P QLSGG++QR+ IA A+L +L+ DE
Sbjct: 134 ILNCLDRVGIRQAAKRLTDYPH-----------QLSGGERQRVMIAMALLTRPELLIADE 182
Query: 1479 ASSALDLESEKHVQDALRKVSKR--ATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHE 1535
++ALD+ + + LR++ + + + H LS +R+ A+ +AV+++G VE
Sbjct: 183 PTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRAA 242
Query: 1536 TLLAS 1540
TL ++
Sbjct: 243 TLFSA 247
|
Length = 529 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 4e-12
Identities = 62/210 (29%), Positives = 100/210 (47%), Gaps = 14/210 (6%)
Query: 691 LRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFY--DPTKGLITLDGHDLKSLQVKWL- 747
L ++L + + + L G +G GKST+ ++ Y G I G LK+ ++
Sbjct: 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTE 76
Query: 748 RTQIGMVGQEPILFAT-SILENVLMGKENATMKEAVAACKAAS--AHSFISELPLGYDTQ 804
R I ++ QE L S+ EN+ +G E T+ A A A + + EL L
Sbjct: 77 RAGIVIIHQELTLVPELSVAENIFLGNE-ITLPGGRMAYNAMYLRAKNLLRELQLD-ADN 134
Query: 805 VGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSAL-DSESESIVQQAIDKISVGRTT 863
V GGQ+Q + +A+A+ K R+L+LDEP+S+L + E+E ++ D + G
Sbjct: 135 VTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVAC 194
Query: 864 IVIAHRLATVKNANTIVVLDQGSVVEIGNH 893
+ I+H+L VK V D V+ G H
Sbjct: 195 VYISHKLNEVK-----AVCDTICVIRDGQH 219
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 4e-12
Identities = 55/209 (26%), Positives = 101/209 (48%), Gaps = 7/209 (3%)
Query: 691 LRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGH-DLKSL-QVKWLR 748
L L+ + + L+G +G GK+T+ +I P +G + DG DL L + + R
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIAR 80
Query: 749 TQIGMVGQEPILF-ATSILENV-LMGKENATMKEAVAACKAASAHSFISEL--PLGYDTQ 804
IG Q+P +F ++ EN+ L + ++ ++ A A I EL +G +
Sbjct: 81 AGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDE 140
Query: 805 VGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTI 864
LS GQKQ + + + +DP++LLLDEP + + + + ++ + +
Sbjct: 141 RDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSIL 200
Query: 865 VIAHRLATVKN-ANTIVVLDQGSVVEIGN 892
V+ H + V+ A+ + VL +GSV+ G+
Sbjct: 201 VVEHDMGFVREIADKVTVLHEGSVLAEGS 229
|
Length = 249 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.1 bits (166), Expect = 4e-12
Identities = 59/243 (24%), Positives = 110/243 (45%), Gaps = 22/243 (9%)
Query: 666 LSSVSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFY 725
++ ++ + +T Y + +L + IP A++G +G GKST+ + R
Sbjct: 1 MTESVARLRGEQLTLGYGKY---TVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLM 57
Query: 726 DPTKGLITLDGHDLKSLQVKWLRTQIGMVGQEPILFA-TSILENVLMGKE------NATM 778
P G + LDG ++ K + +IG++ Q ++ E V G+
Sbjct: 58 TPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWR 117
Query: 779 KEAVAACKAASAHSFISELPL-GYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDE 837
KE A A + I+ L DT LSGGQ+QR +A + ++ I+LLDE
Sbjct: 118 KEDEEAVTKAMQATGITHLADQSVDT--------LSGGQRQRAWIAMVLAQETAIMLLDE 169
Query: 838 PTSALDSESESIVQQAIDKIS--VGRTTIVIAHRL-ATVKNANTIVVLDQGSVVEIGNHR 894
PT+ LD + + + + +++ G T + H L + A+ ++ L +G +V G +
Sbjct: 170 PTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPK 229
Query: 895 QLL 897
+++
Sbjct: 230 EIV 232
|
Length = 265 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 65.2 bits (160), Expect = 4e-12
Identities = 33/78 (42%), Positives = 52/78 (66%), Gaps = 7/78 (8%)
Query: 811 QLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAH-R 869
QLSGG+K R+ALA+ ++++P +LLLDEPT+ LD ES +++A+ + T I+++H R
Sbjct: 70 QLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYP--GTVILVSHDR 127
Query: 870 --LATVKNANTIVVLDQG 885
L V A I+ L+ G
Sbjct: 128 YFLDQV--ATKIIELEDG 143
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 7e-12
Identities = 52/236 (22%), Positives = 102/236 (43%), Gaps = 11/236 (4%)
Query: 1320 TFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVD 1379
F + + ++D ++ G +V +G +G+GKST + ++ P GKV + G D
Sbjct: 28 HFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKD 87
Query: 1380 LREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPK--ASWAEIEEAAEEAYIHKFISS 1437
++LR ++GQ D AL + + EI + +
Sbjct: 88 PFRRREEYLRSIGLVMGQ----KLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEI 143
Query: 1438 LPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRK 1497
L E + +LS GQ+ R +A A+L +VL LDE + LD+ ++ ++++ L++
Sbjct: 144 L--DLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKE 201
Query: 1498 VS-KRATTIVVA-HRLSTIRE-ANMIAVVRDGAVVEYGSHETLLASHLNGVYASLV 1550
+ +R T+++ H I + + ++ G +V G+ L S+
Sbjct: 202 YNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQFGPYKEFSVE 257
|
Length = 325 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 7e-12
Identities = 60/215 (27%), Positives = 97/215 (45%), Gaps = 23/215 (10%)
Query: 1328 EVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKW 1387
+V + KD L + G V VG SG GKST++ +I D G + I + ++
Sbjct: 15 DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA- 73
Query: 1388 LRKQTALVGQEPALFAG-TIRDNIALGN--PKASWAEI----EEAAEEAYIHKFISSLPQ 1440
+ +V Q AL+ ++ +N++ G A EI + AE + + P+
Sbjct: 74 -ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPK 132
Query: 1441 GYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSK 1500
LSGGQ+QR+AI R ++ V LLDE S LD ++ + ++ K
Sbjct: 133 A-----------LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHK 181
Query: 1501 R--ATTIVVAH-RLSTIREANMIAVVRDGAVVEYG 1532
R T I V H ++ + A+ I V+ G V + G
Sbjct: 182 RLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVG 216
|
Length = 369 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 9e-12
Identities = 58/221 (26%), Positives = 100/221 (45%), Gaps = 27/221 (12%)
Query: 690 ILRSLNLVIPSSKTLALVGTSGGGKSTVFALI--ERFYDPTKGLITLDGHDLKSLQV-KW 746
IL+ +NL + + A++G +G GKST+ I Y+ T G I G DL L+ +
Sbjct: 15 ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDER 74
Query: 747 LRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAA------SAHSFISELP-- 798
R + + Q P L + A+ A ++A F+ L
Sbjct: 75 ARAGLFLAFQYPEEIPGVSNLEFL--------RSALNARRSARGEEPLDLLDFLKLLKAK 126
Query: 799 ---LGYDTQVGDRG--TQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQA 853
LG D + +R SGG+K+R + + + +P++ +LDE S LD ++ IV +
Sbjct: 127 LALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEG 186
Query: 854 IDKI-SVGRTTIVIAH--RLATVKNANTIVVLDQGSVVEIG 891
I+++ R+ ++I H RL + + VL G +V+ G
Sbjct: 187 INRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSG 227
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 68.3 bits (168), Expect = 1e-11
Identities = 48/231 (20%), Positives = 99/231 (42%), Gaps = 36/231 (15%)
Query: 1322 TYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVD-- 1379
R VT +KD +V+ G +V + G +G+G+S ++ I P G++++ G D
Sbjct: 265 VKDRRG-VTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVL 323
Query: 1380 -------LREINVKWL---RKQTALVGQEPALFAGTIRDNIALGNPKA---------SWA 1420
R + + ++ R LV ++ +N+ LG
Sbjct: 324 GRLSPRERRRLGLAYVPEDRHGHGLVLDL------SLAENLVLGRHDKKPFSRGGFLDRR 377
Query: 1421 EIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEAS 1480
I + A E I +F + LSGG +Q++ +AR + + +L+ + +
Sbjct: 378 AIRKFAREL-IEEF-DVRAPSPDAPAR----SLSGGNQQKLILARELARRPDLLIAAQPT 431
Query: 1481 SALDLESEKHVQDALRKVSKRATTI-VVAHRLSTIRE-ANMIAVVRDGAVV 1529
LD+ + + + + L ++ + +++ L I E ++ IAV+ +G +V
Sbjct: 432 RGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIV 482
|
Length = 501 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 1e-11
Identities = 68/282 (24%), Positives = 129/282 (45%), Gaps = 50/282 (17%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRF--YDPNQG 1371
IE+K +T + VLK+ ++ G ++ ++G SG+GKS ++ +++ Y+P G
Sbjct: 1 IEVKNLTKKFD---GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSG 57
Query: 1372 KVM-----------IE------------GVDLREINVK-W---------LRKQTALVGQE 1398
+++ +E G L V W +RK+ A++ Q
Sbjct: 58 RIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQR 117
Query: 1399 P-ALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQ-GYETQVGESGVQLSGG 1456
AL+ D+ L N + EI +EA + + + + ++ LSGG
Sbjct: 118 TFALYG----DDTVLDNVLEALEEIGYEGKEA-VGRAVDLIEMVQLSHRITHIARDLSGG 172
Query: 1457 QKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRA--TTIVVAHRLSTI 1514
+KQR+ +AR + K + L DE + LD ++ K V +AL + K + + ++ +H I
Sbjct: 173 EKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVI 232
Query: 1515 REANMIAV-VRDGAVVEYGSHETLLASHLNGVYASLVRAETE 1555
+ + A+ + +G + E G+ + ++A + GV S V E E
Sbjct: 233 EDLSDKAIWLENGEIKEEGTPDEVVAVFMEGV--SEVEKECE 272
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 1e-11
Identities = 75/244 (30%), Positives = 115/244 (47%), Gaps = 39/244 (15%)
Query: 1338 KVKGGSMVALVGGSGSGKSTVIWLIQRFYD-PNQGKVMIE-----GVDLREINVKWLRKQ 1391
VK G +V +VG SGSGKS I D P G+VM E G DL+ I+ K R
Sbjct: 29 SVKQGEVVGIVGESGSGKSVSSLAIMGLIDYP--GRVMAEKLEFNGQDLQRISEKERRN- 85
Query: 1392 TALVGQEPALFAGTIRDNIALGNPKASWA-EIEEA-------AEEAYIHKFISSLPQGYE 1443
LVG E A+ +D + NP + +I EA ++ + I L
Sbjct: 86 --LVGAEVAMI---FQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLL----- 135
Query: 1444 TQVG----ESGV-----QLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDA 1494
QVG S + QLSGG QR+ IA AI ++L+ DE ++ALD+ + + +
Sbjct: 136 NQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIEL 195
Query: 1495 LRKVSKRATT--IVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLASHLNGVYASLVR 1551
L ++ ++ +++ H L+ + E A+ I V+ G VVE G + + + +L+R
Sbjct: 196 LLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDIFRAPRHPYTQALLR 255
Query: 1552 AETE 1555
A E
Sbjct: 256 ALPE 259
|
Length = 326 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 2e-11
Identities = 51/219 (23%), Positives = 96/219 (43%), Gaps = 51/219 (23%)
Query: 1328 EVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRF--YDPNQGKVMIEGVDLREINV 1385
+LK L +K G + AL+G +GSGKST+ I Y+ +G+++ +G D+ ++
Sbjct: 12 GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPP 71
Query: 1386 KWLRKQTALVG-----QEPALFAG-TIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLP 1439
+ + A +G Q P G D F+ +
Sbjct: 72 E----ERARLGIFLAFQYPPEIPGVKNAD-------------------------FLRYVN 102
Query: 1440 QGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVS 1499
+G SGG+K+R I + +L + +LDE S LD+++ + V + + K+
Sbjct: 103 EG-----------FSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLR 151
Query: 1500 KRATT-IVVAH--RLSTIREANMIAVVRDGAVVEYGSHE 1535
+ + +++ H RL + + + V+ DG +V+ G E
Sbjct: 152 EEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSGDKE 190
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 2e-11
Identities = 53/233 (22%), Positives = 108/233 (46%), Gaps = 24/233 (10%)
Query: 1310 KPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPN 1369
P I + + ++ V LK L V G + AL+G +G+GKST++ ++ ++P
Sbjct: 3 TPY-ISMAGIGKSFGP---VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT 58
Query: 1370 QGKVMIEGVDLREINVKWLRKQ-TALVGQEPA----------LFAGTIRDNIALGNPKAS 1418
+G + I ++ +++ K + ++ QE + L+ G G
Sbjct: 59 KGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIID 118
Query: 1419 WAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDE 1478
W E+ A + L + +V LS KQ + IA+ ++ ++V+++DE
Sbjct: 119 WREMRVRAAMMLL---RVGLKVDLDEKVAN----LSISHKQMLEIAKTLMLDAKVIIMDE 171
Query: 1479 ASSALDLESEKHVQDALRKVSKRATTIV-VAHRLSTIRE-ANMIAVVRDGAVV 1529
+S+L + ++ + ++ K T IV ++H+L+ IR + V++DG+ V
Sbjct: 172 PTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSV 224
|
Length = 510 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 2e-11
Identities = 67/258 (25%), Positives = 132/258 (51%), Gaps = 29/258 (11%)
Query: 1302 KGRKLERSKPLGIELKMVTFTYPS--RPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVI 1359
K ++E +P+ I+++ V+ Y S R V + + L+VK G + +VG SG+GK+T+
Sbjct: 269 KECEVEVGEPI-IKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLS 327
Query: 1360 WLIQRFYDPNQGKVMI----EGVDLREINVKWLRKQTALVG---QEPALFA-GTIRDNI- 1410
+I +P G+V + E VD+ + + +G QE L+ T+ DN+
Sbjct: 328 KIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLT 387
Query: 1411 -ALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGV-----QLSGGQKQRIAIA 1464
A+G +E E A + I+ G++ + E + +LS G++ R+A+A
Sbjct: 388 EAIG--------LELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALA 439
Query: 1465 RAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKR--ATTIVVAHRLSTIRE-ANMIA 1521
+ ++K R+++LDE + +D ++ V ++ K + T I+V+H + + + + A
Sbjct: 440 QVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAA 499
Query: 1522 VVRDGAVVEYGSHETLLA 1539
++RDG +V+ G E ++
Sbjct: 500 LMRDGKIVKIGDPEEIVE 517
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 2e-11
Identities = 74/264 (28%), Positives = 118/264 (44%), Gaps = 44/264 (16%)
Query: 1311 PLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPN- 1369
P IEL+ + ++P V L ++ G ++ALVGGSGSGKS
Sbjct: 2 PQQIELRNIAL-QAAQPLV---HGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGV 57
Query: 1370 ---QGKVMIEGV-----DLREINVKWLRKQTALVGQEP-ALF--AGTIRDN-----IALG 1413
G+V+++G LR + A + Q P + F T+ + +ALG
Sbjct: 58 RQTAGRVLLDGKPVAPCALRGRKI-------ATIMQNPRSAFNPLHTMHTHARETCLALG 110
Query: 1414 NPK--ASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGS 1471
P A+ EA + + P ++SGG QR+ IA A+L +
Sbjct: 111 KPADDATLTAALEAVGLENAARVLKLYP-----------FEMSGGMLQRMMIALALLCEA 159
Query: 1472 RVLLLDEASSALDLESEKHVQDALRK-VSKRATTI-VVAHRLSTI-REANMIAVVRDGAV 1528
++ DE ++ LD+ ++ + D L V KRA + +V H + + R A+ +AV+ G +
Sbjct: 160 PFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRI 219
Query: 1529 VEYGSHETLLASHLNGVYASLVRA 1552
VE G ETL + + V SLV A
Sbjct: 220 VEQGDVETLFNAPKHAVTRSLVSA 243
|
Length = 254 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 3e-11
Identities = 56/216 (25%), Positives = 98/216 (45%), Gaps = 18/216 (8%)
Query: 1330 TVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWL- 1388
+L+ L+V G + ++G +G GK+T++ + G + ++G D+ ++
Sbjct: 14 HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERA 73
Query: 1389 RKQTALV--GQE--PALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYET 1444
R A V G+E P L T+ +N+ G I I L +
Sbjct: 74 RAGIAYVPQGREIFPRL---TVEENLLTGLAAL-------PRRSRKIPDEIYELFPVLKE 123
Query: 1445 QVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRA-- 1502
+G G LSGGQ+Q++AIARA++ ++LLLDE + + K + +R++
Sbjct: 124 MLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGM 183
Query: 1503 TTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETL 1537
++V L RE A+ V+ G VV G+ + L
Sbjct: 184 AILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 3e-11
Identities = 50/213 (23%), Positives = 96/213 (45%), Gaps = 33/213 (15%)
Query: 1308 RSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYD 1367
SK G+ + + EV LK ++ G +V +G +G+GK+T + ++
Sbjct: 13 YSKEPGLIGSLKSLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ 72
Query: 1368 PNQGKVMIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAE 1427
P G+V + G+ + K+LR+ + GQ+ L W ++ +
Sbjct: 73 PTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQL-----------------WWDL-PVID 114
Query: 1428 EAYIHKFISSLPQG-YETQVGE-------------SGVQLSGGQKQRIAIARAILKGSRV 1473
Y+ I LP ++ ++ E QLS GQ+ R IA A+L +
Sbjct: 115 SFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEI 174
Query: 1474 LLLDEASSALDLESEKHVQDALRKVSK-RATTI 1505
L LDE + LD+ +++++++ L++ ++ R TT+
Sbjct: 175 LFLDEPTIGLDVVAQENIRNFLKEYNRERGTTV 207
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 3e-11
Identities = 59/225 (26%), Positives = 104/225 (46%), Gaps = 28/225 (12%)
Query: 1327 PEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVK 1386
P V L D + G + AL+G +G+GKST++ ++ Y P+ G ++I+G ++R +
Sbjct: 15 PGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTT 74
Query: 1387 -WLRKQTALVGQE----PALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSL--- 1438
L A++ QE P + T+ +N+ LG + + + L
Sbjct: 75 AALAAGVAIIYQELHLVPEM---TVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVD 131
Query: 1439 --PQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDL-ESEK--HVQD 1493
P T + LS GQ+Q + IA+A+ + +RV+ DE +S+L E E+ V
Sbjct: 132 IDPD---TPLKY----LSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIR 184
Query: 1494 ALRKVSKRATTIVVAHRLSTI-REANMIAVVRDGAVVEYGSHETL 1537
LR + + V+HR+ I + I V +DG V + + +
Sbjct: 185 ELRAEGR--VILYVSHRMEEIFALCDAITVFKDGRYVA--TFDDM 225
|
Length = 501 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 4e-11
Identities = 60/198 (30%), Positives = 96/198 (48%), Gaps = 30/198 (15%)
Query: 1328 EVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKW 1387
E+++L L VK G +AL+G SGSGKST++ ++ D + G+V + G L +++ +
Sbjct: 22 ELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEA 81
Query: 1388 ---LR-KQTALVGQE----PALFAGTIRDNIAL------GNPKASWAEIEEAAEEAYIHK 1433
LR K V Q P L A +N+ L + + S + E+ + K
Sbjct: 82 RAKLRAKHVGFVFQSFMLIPTLNA---LENVELPALLRGESSRQSRNGAKALLEQLGLGK 138
Query: 1434 FISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQD 1493
+ LP QLSGG++QR+A+ARA VL DE + LD ++ + D
Sbjct: 139 RLDHLP-----------AQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIAD 187
Query: 1494 ALRKVSKR-ATT-IVVAH 1509
L +++ TT I+V H
Sbjct: 188 LLFSLNREHGTTLILVTH 205
|
Length = 228 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 64.5 bits (157), Expect = 5e-11
Identities = 54/221 (24%), Positives = 102/221 (46%), Gaps = 29/221 (13%)
Query: 691 LRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWL-RT 749
L L+ + + + L LVG +G GKST+ A + G I G L++ L R
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARH 73
Query: 750 QIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRG 809
+ + Q+ FA + + + + + T + ++ L D ++G
Sbjct: 74 RAYLSQQQTPPFAMPVWHYLTLHQPDKTR---------TELLNDVAGA-LALDDKLGRST 123
Query: 810 TQLSGGQKQRIALARAMIK-------DPRILLLDEPTSALDSESESIVQQAIDKISV--- 859
QLSGG+ QR+ LA +++ ++LLLDEP ++LD +S A+D++
Sbjct: 124 NQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQS----ALDRLLSALC 179
Query: 860 --GRTTIVIAHRLA-TVKNANTIVVLDQGSVVEIGNHRQLL 897
G ++ +H L T+++A+ +L +G ++ G ++L
Sbjct: 180 QQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVL 220
|
Length = 248 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 62.8 bits (154), Expect = 5e-11
Identities = 37/214 (17%), Positives = 85/214 (39%), Gaps = 62/214 (28%)
Query: 1331 VLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWL-- 1388
++D +V+ G +V + G G+G++ + + P G++ ++G + + +
Sbjct: 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIR 74
Query: 1389 ---------RKQTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLP 1439
RK+ LV + +NIAL
Sbjct: 75 AGIAYVPEDRKREGLVLDLS------VAENIALS-------------------------- 102
Query: 1440 QGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVS 1499
LSGG +Q++ +AR + + RVL+LDE + +D+ ++ + +R+++
Sbjct: 103 -----------SLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELA 151
Query: 1500 KRATTIVVAHRLST-----IREANMIAVVRDGAV 1528
+++ +S+ + + I V+ +G +
Sbjct: 152 DAGKAVLL---ISSELDELLGLCDRILVMYEGRI 182
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 6e-11
Identities = 57/223 (25%), Positives = 103/223 (46%), Gaps = 35/223 (15%)
Query: 1331 VLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRF--YDPNQGKVMIEGVDLREINV-KW 1387
+LK L VK G + A++G +GSGKST+ + I Y+ +G+++ +G D+ E++ +
Sbjct: 19 ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDER 78
Query: 1388 LRKQTALVGQEPALFAG-TIRD------NIALGNPKASWA---EIEEAAE-----EAYIH 1432
R L Q P G T D N G E++E AE E ++
Sbjct: 79 ARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLE 138
Query: 1433 KFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQ 1492
+++ SGG+K+R I + +L ++ +LDE S LD+++ K V
Sbjct: 139 RYV--------------NEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVA 184
Query: 1493 DALRK-VSKRATTIVVAH--RLSTIREANMIAVVRDGAVVEYG 1532
+ + + +++ H RL + + + V+ DG +V+ G
Sbjct: 185 EGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSG 227
|
Length = 251 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 62.0 bits (150), Expect = 6e-11
Identities = 37/191 (19%), Positives = 59/191 (30%), Gaps = 59/191 (30%)
Query: 1342 GSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQEPAL 1401
G ++ +VG GSGK+T+ + R P G V+ I+ + + ++
Sbjct: 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIY-------IDGEDILEEVLD------- 47
Query: 1402 FAGTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRI 1461
Q VG SG + R+
Sbjct: 48 --------------------------------------QLLLIIVGGKKASGSGELRLRL 69
Query: 1462 AIARAILKGSRVLLLDEASSALDLESEKHVQDALR-------KVSKRATTIVVAHRLSTI 1514
A+A A VL+LDE +S LD E E + K K T I+ + +
Sbjct: 70 ALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDL 129
Query: 1515 REANMIAVVRD 1525
A +
Sbjct: 130 GPALLRRRFDR 140
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 6e-11
Identities = 56/201 (27%), Positives = 90/201 (44%), Gaps = 42/201 (20%)
Query: 1326 RPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRF--------YDPNQGKVMIEG 1377
E VL++ L++K G +VA+VG SG+GK+T++ +I Y P+ GKV +
Sbjct: 393 VIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPK 452
Query: 1378 VDLREINVKWLRKQTALVGQEPALFAGTIRDNIA--LGNPKASWAEIEEA-AEEAYIHKF 1434
+ + EP TI +++ G+ A+ + A +A +
Sbjct: 453 NTVSALIPGEY---------EPEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVL--- 500
Query: 1435 ISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDA 1494
Y + E LS GQK+R +A+ + + VLL+DE ++ LD E
Sbjct: 501 -------YRRKFSE----LSTGQKERAKLAKLLAERPNVLLIDEFAAHLD---ELTAVRV 546
Query: 1495 LRKVSKRA-----TTIVVAHR 1510
RK+S+ A T IVV HR
Sbjct: 547 ARKISELAREAGITLIVVTHR 567
|
Length = 593 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 7e-11
Identities = 58/198 (29%), Positives = 82/198 (41%), Gaps = 57/198 (28%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
I F +F YP P ++ ++LN I +A+VG +G GKST+ LI P+ G +
Sbjct: 509 ISFSDASFGYPGGP--LLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTV 566
Query: 733 --------------TLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENATM 778
+DG DL S P+L+ V K
Sbjct: 567 FRSAKVRMAVFSQHHVDGLDLSS---------------NPLLYMMRCFPGVPEQK----- 606
Query: 779 KEAVAACKAASAHSFISELPLGYDTQVGDRGTQ----LSGGQKQRIALARAMIKDPRILL 834
AH LG G+ Q LSGGQK R+A A+ K P ILL
Sbjct: 607 ---------LRAH-------LGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILL 650
Query: 835 LDEPTSALDSES-ESIVQ 851
LDEP++ LD ++ E+++Q
Sbjct: 651 LDEPSNHLDLDAVEALIQ 668
|
Length = 718 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 8e-11
Identities = 52/194 (26%), Positives = 94/194 (48%), Gaps = 19/194 (9%)
Query: 1326 RPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPN----QGKVMIEGVDLR 1381
RP +LK+ K G ++A++G SG+GK+T++ + F P G V++ G
Sbjct: 35 RPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALA-FRSPKGVKGSGSVLLNG---M 90
Query: 1382 EINVKWLRKQTALVGQEPALFAG--TIRDNIA----LGNPKASWAEIEEAAEEAYIHKFI 1435
I+ K +R +A V Q+ LF T+R+++ L P+ + + + +
Sbjct: 91 PIDAKEMRAISAYV-QQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQAL- 148
Query: 1436 SSLPQGYETQVGESGVQ--LSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQD 1493
L + T++G G LSGG+++R+A A +L +L DE +S LD V
Sbjct: 149 -GLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQ 207
Query: 1494 ALRKVSKRATTIVV 1507
L+ ++++ TI+
Sbjct: 208 VLKGLAQKGKTIIC 221
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 8e-11
Identities = 53/207 (25%), Positives = 92/207 (44%), Gaps = 51/207 (24%)
Query: 1321 FTYPSRPEVTVLKDFCLKVKGGS-----MVALVGGSGSGKSTVIWLIQRFYDPNQGKVMI 1375
+TYP+ L +F L+V+GGS ++ ++G +G GK+T I ++ P++G + I
Sbjct: 1 YTYPTM--KKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEI 58
Query: 1376 EGVDL----REINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYI 1431
E + + I + GT+RD ++ ++ Y
Sbjct: 59 ELDTVSYKPQYIKAD---------------YEGTVRDLLS------------SITKDFYT 91
Query: 1432 HKFISS-------LPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALD 1484
H + + + Q + +V E LSGG+ QR+AIA + K + + LLDE S+ LD
Sbjct: 92 HPYFKTEIAKPLQIEQILDREVPE----LSGGELQRVAIAACLSKDADIYLLDEPSAYLD 147
Query: 1485 LESEKHVQDALRKV--SKRATTIVVAH 1509
+E +R+ + T VV H
Sbjct: 148 VEQRLMASKVIRRFAENNEKTAFVVEH 174
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 1e-10
Identities = 53/175 (30%), Positives = 88/175 (50%), Gaps = 14/175 (8%)
Query: 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGL 731
++ + V +Y + + + + ++L + + + LVG SG GKST+ ++ T G
Sbjct: 3 GLKLQAVRKSYDGKTQVI--KGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGE 60
Query: 732 ITLDGHDLKSLQVKWLRTQIGMVGQEPILFA-TSILENVLMGKENATM-KEAVAACKAAS 789
I + G + L+ R I MV Q L+ S+ EN+ G + M K + A +
Sbjct: 61 IWIGGRVVNELEPA-DR-DIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEA 118
Query: 790 AHSFISELPLGYDTQVGDRG-TQLSGGQKQRIALARAMIKDPRILLLDEPTSALD 843
A L L + DR +LSGGQ+QR+A+ RA++++P + L DEP S LD
Sbjct: 119 ARI----LELE---PLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLD 166
|
Length = 356 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 66.6 bits (162), Expect = 1e-10
Identities = 56/214 (26%), Positives = 105/214 (49%), Gaps = 16/214 (7%)
Query: 1344 MVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQEPALFA 1403
+ A +G +G+GK+T + ++ P G V++ G D+ E N+ +R+ + Q LF
Sbjct: 958 ITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDI-ETNLDAVRQSLGMCPQHNILFH 1016
Query: 1404 G-TIRDNIALGNPKASWAEIE-EAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRI 1461
T+ ++I +A+++ + EEA + G + E LSGG ++++
Sbjct: 1017 HLTVAEHILF------YAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKL 1070
Query: 1462 AIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIREANM-- 1519
++A A + ++V++LDE +S +D S + + D L K T I+ H + EA++
Sbjct: 1071 SVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMD---EADLLG 1127
Query: 1520 --IAVVRDGAVVEYGSHETLLASHLNGVYASLVR 1551
IA++ G + G+ L G Y +LVR
Sbjct: 1128 DRIAIISQGRLYCSGTPLFLKNCFGTGFYLTLVR 1161
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 1e-10
Identities = 73/285 (25%), Positives = 117/285 (41%), Gaps = 64/285 (22%)
Query: 648 EIIDRVPEIDP-------YNSEGRKLSSVSGKIEFKGVTFAYPS---------------- 684
IDR DP R + + G I+FK VT + S
Sbjct: 326 RYIDRFVGEDPMAYPHLLLAPRYRMVEKLEGPIKFKNVTKTFASELDIKGLPNEFQDILE 385
Query: 685 -------RPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERF--------YDPTK 729
E +LR+LNL I +A+VG SG GK+T+ +I Y P
Sbjct: 386 SFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDS 445
Query: 730 GLITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAAS 789
G + + + + +L + G V +ILE++ + + AV A
Sbjct: 446 GKVEVPKNTVSALIPGEYEPEFGEV---------TILEHL--RSKTGDLNAAVEILNRA- 493
Query: 790 AHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESI 849
+S+ L Y + + LS GQK+R LA+ + + P +LL+DE + LD +
Sbjct: 494 ---GLSDAVL-YRRKFSE----LSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVR 545
Query: 850 VQQAIDKIS--VGRTTIVIAHRLATVKNA---NTIVVLDQGSVVE 889
V + I +++ G T IV+ HR V NA +T++++ G V
Sbjct: 546 VARKISELAREAGITLIVVTHR-PEVGNALRPDTLILVGYGKVPV 589
|
Length = 593 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 65.7 bits (160), Expect = 1e-10
Identities = 63/225 (28%), Positives = 109/225 (48%), Gaps = 27/225 (12%)
Query: 687 ETVILRSLNLVIPSSKTLALVGTSGGGKSTVF-ALIERFYDPT-KGLITLDGHDLKSLQV 744
E IL + + + LA++G SG GKST+ AL R G I +
Sbjct: 80 ERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKP----T 135
Query: 745 KWLRTQIGMVGQEPILFA------TSILENVLMGKENATMKEAVAACKAASAHSFISELP 798
K + + G V Q+ IL+ T + ++L ++ T +E K A S ISEL
Sbjct: 136 KQILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQE-----KILVAESVISELG 190
Query: 799 LGY--DTQVGD---RGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESE-SIVQQ 852
L +T +G+ RG +SGG+++R+++A M+ +P +L+LDEPTS LD+ + +V
Sbjct: 191 LTKCENTIIGNSFIRG--ISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLT 248
Query: 853 AIDKISVGRTTIVIAHRLAT--VKNANTIVVLDQGSVVEIGNHRQ 895
G+T + H+ ++ + ++++VL +G + G
Sbjct: 249 LGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSD 293
|
Length = 659 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 2e-10
Identities = 59/216 (27%), Positives = 105/216 (48%), Gaps = 23/216 (10%)
Query: 1337 LKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREIN-VKWL--RKQTA 1393
L++ G + +VG SG GKST I G+V G DL + +W R
Sbjct: 42 LRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQ 101
Query: 1394 LVGQEPALFAG-----TIRDNIA----LGNPKASWAEIEEAAEEAYIHKFISSLPQGYET 1444
++ Q+P A TI + IA +PK S E+++ + + + LP
Sbjct: 102 MIFQDP--LASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKA--MMLKVGLLPN---- 153
Query: 1445 QVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRA-- 1502
+ + SGGQ QRI IARA++ ++++ DE SALD+ + V + L+++ +
Sbjct: 154 LINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGL 213
Query: 1503 TTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETL 1537
+ I +AH L+ ++ ++ + V+ G VE G+++ +
Sbjct: 214 SLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEV 249
|
Length = 331 |
| >gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 2e-10
Identities = 61/211 (28%), Positives = 99/211 (46%), Gaps = 33/211 (15%)
Query: 704 LALVGTSGGGKS----TVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIG----MVG 755
+ +VG SG GKS + LI+ + +G DL+ + K R +G M+
Sbjct: 36 VGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIF 95
Query: 756 QEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVG--DRGT--- 810
Q+P+ TS+ +G + + EA+ + + + + QVG D +
Sbjct: 96 QDPM---TSLNPCYTVGFQ---IMEAIKVHQGGN-KKTRRQRAIDLLNQVGIPDPASRLD 148
Query: 811 ----QLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKI-----SVGR 861
QLSGG QR+ +A A+ P++L+ DEPT+ALD +I Q I+ +
Sbjct: 149 VYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDV---TIQAQIIELLLELQQKENM 205
Query: 862 TTIVIAHRLATV-KNANTIVVLDQGSVVEIG 891
++I H LA V + A+ I+V+ G VVE G
Sbjct: 206 ALVLITHDLALVAEAAHKIIVMYAGQVVETG 236
|
Length = 326 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 2e-10
Identities = 54/188 (28%), Positives = 86/188 (45%), Gaps = 20/188 (10%)
Query: 655 EIDPYNSEGRKLSSVSG--KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGG 712
+ PY +E + + +E + VTFAY + +NL I + L L+G +G
Sbjct: 303 ALAPYKAEFPRPQAFPDWQTLELRNVTFAYQD--NGFSVGPINLTIKRGELLFLIGGNGS 360
Query: 713 GKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMG 772
GKST+ L+ Y P G I LDG + + Q + R V + LF + L+G
Sbjct: 361 GKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLF------DQLLG 414
Query: 773 KENATMKEAVAACKAASAHSFISELPLGYDTQVGD---RGTQLSGGQKQRIALARAMIKD 829
E A+ ++ L + + ++ D +LS GQK+R+AL A+ ++
Sbjct: 415 PEGKPANPALVE-------KWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEE 467
Query: 830 PRILLLDE 837
ILLLDE
Sbjct: 468 RDILLLDE 475
|
Length = 547 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 2e-10
Identities = 59/214 (27%), Positives = 104/214 (48%), Gaps = 22/214 (10%)
Query: 1325 SRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREIN 1384
S P V L + LKV+ S+ AL+G +G+GKST++ + Y + G ++ +G +EI+
Sbjct: 7 SFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQG---KEID 63
Query: 1385 VK----WLRKQTALVGQEPALFAG-TIRDNIALGN-PKASWAEIEEAAEEAYIHKF---- 1434
K L ++V QE L ++ DN+ LG P ++ F
Sbjct: 64 FKSSKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELD 123
Query: 1435 ISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDA 1494
I P+ LS Q Q I IA+A ++++++DE +S+L + H+
Sbjct: 124 IDIDPR-------AKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTI 176
Query: 1495 LRKVSKRATTIV-VAHRLSTIRE-ANMIAVVRDG 1526
+RK+ +R IV ++H++ I + + I ++RDG
Sbjct: 177 IRKLKERGCGIVYISHKMEEIFQLCDEITILRDG 210
|
Length = 491 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 2e-10
Identities = 55/205 (26%), Positives = 97/205 (47%), Gaps = 29/205 (14%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
+ + V+ ++ R +L ++L + K L L+G +G GKST+ ++ P +G+I
Sbjct: 5 VSLENVSVSFGQR---RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI 61
Query: 733 TLDGHDLKSLQVKWLRTQIGMVGQEPILFATSIL--ENVLMGKENATMKEAVAACKAASA 790
+G LR IG V Q+ L T L L + ++ + A K A
Sbjct: 62 KRNGK---------LR--IGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQA 110
Query: 791 HSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIV 850
I + P+ +LSGG+ QR+ LARA++ P++L+LDEPT +D + +
Sbjct: 111 GHLI-DAPM----------QKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVAL 159
Query: 851 QQAIDKI--SVGRTTIVIAHRLATV 873
ID++ + ++++H L V
Sbjct: 160 YDLIDQLRRELDCAVLMVSHDLHLV 184
|
Length = 251 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 2e-10
Identities = 60/213 (28%), Positives = 92/213 (43%), Gaps = 38/213 (17%)
Query: 1332 LKDFCLKVKGGSM-----VALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVK 1386
DF L+V+ G + + ++G +G GK+T + L+ P++G DL+ ++ K
Sbjct: 352 YGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSE----EDLK-VSYK 406
Query: 1387 WLRKQTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQV 1446
G L IR A G+ EI + +L E V
Sbjct: 407 PQYISPDYDGTVEDLLRSAIRS--AFGSSYF-KTEI--------VKPL--NLEDLLERPV 453
Query: 1447 GESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKV--SKRATT 1504
E LSGG+ QR+AIA A+ + + + LLDE S+ LD+E V +R+ + T
Sbjct: 454 DE----LSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTA 509
Query: 1505 IVVAHRLSTIREANMIAVVRDGAVV---EYGSH 1534
+VV H + MI V D +V E G H
Sbjct: 510 LVVDHDIY------MIDYVSDRLIVFEGEPGKH 536
|
Length = 591 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 2e-10
Identities = 43/174 (24%), Positives = 77/174 (44%), Gaps = 28/174 (16%)
Query: 1325 SRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREI- 1383
R E T+ D + G + + G +G+GK+T++ ++ P+ G+V +G ++ +
Sbjct: 11 ERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVR 70
Query: 1384 -----NVKWLRKQTALVGQEPALFAGTIRDNI----ALGNPKASWAEIEEAAEEAYIHKF 1434
+ +L Q + + L T +N+ + A I EA + +
Sbjct: 71 ESYHQALLYLGHQPGI---KTEL---TALENLHFWQRFHGS-GNAATIWEALAQVGLAGL 123
Query: 1435 ISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESE 1488
LP G QLS GQ++R+A+AR L + + +LDE +ALD E
Sbjct: 124 ED-LPVG----------QLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGV 166
|
Length = 209 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 3e-10
Identities = 45/168 (26%), Positives = 86/168 (51%), Gaps = 15/168 (8%)
Query: 681 AYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLK 740
AY R ++ ++L + S + + L+G +G GK+T F ++ G I +D D+
Sbjct: 12 AYKGRR---VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDIS 68
Query: 741 SLQV-KWLRTQIGMVGQEPILFAT-SILEN---VLMGKENATMKEAVAACKAASAHSFIS 795
L + R IG + QE +F S+ +N VL +++ + ++ + A+ +
Sbjct: 69 LLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQ-----REDRANELME 123
Query: 796 ELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALD 843
E + + G LSGG+++R+ +ARA+ +P+ +LLDEP + +D
Sbjct: 124 EFHIEHLRD--SMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVD 169
|
Length = 241 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.5 bits (157), Expect = 4e-10
Identities = 63/232 (27%), Positives = 108/232 (46%), Gaps = 25/232 (10%)
Query: 1326 RPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREIN- 1384
+ ++ +++ ++ G +A+VG SGSGKS + R + G V + + LR +
Sbjct: 26 QQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSR 85
Query: 1385 -VKWLRKQT------------ALVGQEP-----ALFAGTIRDNIALGNPKASWAEIEEAA 1426
V L +Q+ A++ QEP +F T+ + IA A EEA
Sbjct: 86 QVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVF--TVGEQIAESIRLHQGASREEAM 143
Query: 1427 EEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLE 1486
EA +P+ +T + QLSGG +QR+ IA A+ VL+ DE ++ALD+
Sbjct: 144 VEAKRMLDQVRIPEA-QTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVT 202
Query: 1487 SEKHVQDALRKVSKRAT--TIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHE 1535
+ + ++ + K + I + H + + E A+ + V+ G VE GS E
Sbjct: 203 IQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGSVE 254
|
Length = 623 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 4e-10
Identities = 47/174 (27%), Positives = 80/174 (45%), Gaps = 24/174 (13%)
Query: 684 SRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQ 743
R E + L+ + + + L + G +G GK+T+ ++ P G + G +++
Sbjct: 11 ERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQN-V 69
Query: 744 VKWLRTQIGMVGQEP-ILFATSILEN------VLMGKENATMKEAVAACKAASAHSFISE 796
+ + +G +P I + LEN AT+ EA+A A + +
Sbjct: 70 RESYHQALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAG----LED 125
Query: 797 LPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRIL-LLDEPTSALDSESESI 849
LP+G QLS GQ++R+ALAR + P L +LDEP +ALD E ++
Sbjct: 126 LPVG----------QLSAGQQRRVALAR-LWLSPAPLWILDEPFTALDKEGVAL 168
|
Length = 209 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 5e-10
Identities = 59/236 (25%), Positives = 105/236 (44%), Gaps = 24/236 (10%)
Query: 1328 EVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKW 1387
E T L +V+ G ++ LVG +G+GKST++ + G + G L +
Sbjct: 11 ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATE 69
Query: 1388 LRKQTA-LVGQEPALFAGTIRDNIALGNP-KASWAEIEEAAEEAYIHKFISSLPQGYETQ 1445
L + A L Q+ FA + + L P K + + A + +
Sbjct: 70 LARHRAYLSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGAL-----------ALDDK 118
Query: 1446 VGESGVQLSGGQKQRIAIARAILK-------GSRVLLLDEASSALDLESEKHVQDALRKV 1498
+G S QLSGG+ QR+ +A +L+ ++LLLDE ++LD+ + + L +
Sbjct: 119 LGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSAL 178
Query: 1499 SKRATTIVVA-HRLS-TIREANMIAVVRDGAVVEYGSHETLL-ASHLNGVYASLVR 1551
++ IV++ H L+ T+R A+ +++ G ++ G E +L L Y R
Sbjct: 179 CQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTPPVLAQAYGMNFR 234
|
Length = 248 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 6e-10
Identities = 62/219 (28%), Positives = 102/219 (46%), Gaps = 38/219 (17%)
Query: 704 LALVGTSGGGKSTVFALIERFYDPTKGLITLDG-----HDLKSL---QVKWL-RTQIGMV 754
L +VG SG GK+T+ + P G + DL +L + + L RT+ G V
Sbjct: 35 LGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFV 94
Query: 755 GQEP---ILFATSILENV---LMGKENATMKEAVAACK----AASAHSFISELPLGYDTQ 804
Q P + S N+ LM AV A A+A ++ + + +
Sbjct: 95 HQHPRDGLRMQVSAGGNIGERLM---------AVGARHYGDIRATAGDWLERVEIDAA-R 144
Query: 805 VGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKI-----SV 859
+ D T SGG +QR+ +AR ++ PR++ +DEPT LD S+ + +D + +
Sbjct: 145 IDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDV---SVQARLLDLLRGLVREL 201
Query: 860 GRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLL 897
G +++ H LA + A+ ++V+ QG VVE G Q+L
Sbjct: 202 GLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTDQVL 240
|
Length = 258 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 8e-10
Identities = 57/215 (26%), Positives = 98/215 (45%), Gaps = 18/215 (8%)
Query: 1298 IDNVKGRKLERSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKST 1357
I K + I+L V+ +Y + V+ V G L+G +G+GKST
Sbjct: 26 ISEAKASIPGSMSTVAIDLAGVSKSYGDKA---VVNGLSFTVASGECFGLLGPNGAGKST 82
Query: 1358 VIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQEPAL-FAGTIRDNIALGNP- 1415
+ +I P+ GK+ + GV + + R + +V Q L T+R+N+ +
Sbjct: 83 IARMILGMTSPDAGKITVLGVPVPA-RARLARARIGVVPQFDNLDLEFTVRENLLVFGRY 141
Query: 1416 -KASWAEIEEAAEEAYIHKFISSLPQ--GYETQVGESGVQLSGGQKQRIAIARAILKGSR 1472
S EIE I SL + E++ LSGG K+R+ +ARA++ +
Sbjct: 142 FGMSTREIEAV---------IPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQ 192
Query: 1473 VLLLDEASSALDLESEKHVQDALRKVSKRATTIVV 1507
+L+LDE ++ LD + + + LR + R TI++
Sbjct: 193 LLILDEPTTGLDPHARHLIWERLRSLLARGKTILL 227
|
Length = 340 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 61.5 bits (149), Expect = 8e-10
Identities = 58/239 (24%), Positives = 107/239 (44%), Gaps = 20/239 (8%)
Query: 1311 PLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQ 1370
+ I+L V+ +Y + V+ D + G L+G +G+GKST+ ++ P++
Sbjct: 2 NVAIDLVGVSKSYGDK---VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDR 58
Query: 1371 GKVMIEGVDLREINVKWLRKQTALVGQEPAL-FAGTIRDNIALGNP--KASWAEIEEAAE 1427
GK+ + G + + R +V Q L T+R+N+ + S EIE
Sbjct: 59 GKITVLGEPVPS-RARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAV-- 115
Query: 1428 EAYIHKFISSLPQ--GYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDL 1485
I SL + E++ LSGG K+R+ +ARA++ ++L+LDE ++ LD
Sbjct: 116 -------IPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDP 168
Query: 1486 ESEKHVQDALRKVSKRATTIVVAHRL--STIREANMIAVVRDGAVVEYGSHETLLASHL 1542
+ + + LR + R TI++ R + + V+ G + G L+ +
Sbjct: 169 HARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDEQI 227
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 58.6 bits (143), Expect = 8e-10
Identities = 32/78 (41%), Positives = 51/78 (65%), Gaps = 7/78 (8%)
Query: 1452 QLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAH-R 1510
QLSGG+K R+A+A+ +L+ +LLLDE ++ LDLES + +++AL++ T I+V+H R
Sbjct: 70 QLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKE--YPGTVILVSHDR 127
Query: 1511 --LSTIREANMIAVVRDG 1526
L + A I + DG
Sbjct: 128 YFLDQV--ATKIIELEDG 143
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 8e-10
Identities = 59/230 (25%), Positives = 111/230 (48%), Gaps = 22/230 (9%)
Query: 1335 FCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYD--PNQGKVMIEGVDLREINVKWLRKQT 1392
+V+ G ++ LVG +G+GKST L+ R P G + G L + L +
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKST---LLARMAGLLPGSGSIQFAGQPLEAWSAAELARHR 71
Query: 1393 A-LVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGV 1451
A L Q+ FA + + L P + A + +++ +L G + ++G S
Sbjct: 72 AYLSQQQTPPFAMPVFQYLTLHQP----DKTRTEAVASALNEVAEAL--GLDDKLGRSVN 125
Query: 1452 QLSGGQKQRIAIARAILK-------GSRVLLLDEASSALDLESEKHVQDALRKVSKRATT 1504
QLSGG+ QR+ +A +L+ ++LLLDE ++LD+ + + L ++ ++
Sbjct: 126 QLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIA 185
Query: 1505 IVVA-HRLS-TIREANMIAVVRDGAVVEYGS-HETLLASHLNGVYASLVR 1551
+V++ H L+ T+R A+ + +++ G ++ G E L +L V+ R
Sbjct: 186 VVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLTPENLAQVFGVNFR 235
|
Length = 248 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 1e-09
Identities = 57/241 (23%), Positives = 117/241 (48%), Gaps = 33/241 (13%)
Query: 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGK 1372
+E++ VT ++ + + + +V G + L+G +G+GK+T +I +P +G+
Sbjct: 2 ALEIEGVTKSFGDK---KAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGE 58
Query: 1373 VMIEGVDLREINVKWLRKQTALVG---QEPALFAG-TIRDNIAL-----GNPKASWAEIE 1423
+ G L ++ +G +E L+ T+ D + G PK AEI+
Sbjct: 59 ITWNGGPLS-------QEIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPK---AEIQ 108
Query: 1424 EAAEEAYIHKF-ISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSA 1482
+ +A++ + I G +T+ + LS G +Q+I A++ +L+LDE S
Sbjct: 109 KKL-QAWLERLEIV----GKKTKKIKE---LSKGNQQKIQFISAVIHEPELLILDEPFSG 160
Query: 1483 LDLESEKHVQDALRKVSKRATTIVVA-HRLSTIRE-ANMIAVVRDGAVVEYGSHETLLAS 1540
LD + + ++DA+ ++ + TI+ + HR+ + E + + +++ G V YG+ E + S
Sbjct: 161 LDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRS 220
Query: 1541 H 1541
Sbjct: 221 F 221
|
Length = 300 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 1e-09
Identities = 61/245 (24%), Positives = 121/245 (49%), Gaps = 21/245 (8%)
Query: 1320 TFTYPS----RPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMI 1375
TF Y + R V +K ++ G +A++G +GSGKST+ ++ +P G+++I
Sbjct: 13 TFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLI 72
Query: 1376 EGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIA--LGNPKASWAEIEEAAEEAYIH- 1432
+ L + + ++ ++ Q+P+ + R I+ L P ++E E I
Sbjct: 73 DDHPLHFGDYSYRSQRIRMIFQDPST-SLNPRQRISQILDFPLRLNTDLEPEQREKQIIE 131
Query: 1433 --KFISSLPQ--GYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESE 1488
+ + LP Y + L+ GQKQR+ +ARA++ +V++ DEA ++LD+
Sbjct: 132 TLRQVGLLPDHASYYPHM------LAPGQKQRLGLARALILRPKVIIADEALASLDMSMR 185
Query: 1489 KHVQDALRKVSKRA--TTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLASHLNGV 1545
+ + + ++ ++ + I V L ++ ++ + V+ G VVE GS +LAS L+ +
Sbjct: 186 SQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVLASPLHEL 245
Query: 1546 YASLV 1550
L+
Sbjct: 246 TKRLI 250
|
Length = 267 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 1e-09
Identities = 43/178 (24%), Positives = 77/178 (43%), Gaps = 25/178 (14%)
Query: 684 SRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQ 743
R + L+ + + + L + G +G GK+T+ ++ P G + L+G L +
Sbjct: 9 ERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR 68
Query: 744 VKWLRTQIGMVGQEPILFATSILENV-LMGKENATMKEAVAACKAASAHSFISELPLGYD 802
R + + I S+LEN+ +++ + A A
Sbjct: 69 DSIARGLLYLGHAPGIKTTLSVLENLRFWHADHSD-----EQVEEALA------------ 111
Query: 803 TQVGDRG------TQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAI 854
+VG G QLS GQ++R+ALAR ++ + +LDEPT+ALD + +A+
Sbjct: 112 -RVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAM 168
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 1e-09
Identities = 48/210 (22%), Positives = 82/210 (39%), Gaps = 44/210 (20%)
Query: 680 FAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVF---ALIERFYDPTKGLITLDG 736
R + IL+ + V+ + + ++G G G ST+ A +G I +G
Sbjct: 12 TTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNG 71
Query: 737 HDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISE 796
K K+ +I V +E + F T + L + CK + F+
Sbjct: 72 IPYKEFAEKY-PGEIIYVSEEDVHFPTLTVRETL---------DFALRCKG---NEFV-- 116
Query: 797 LPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDK 856
RG +SGG+++R+++A A++ +L D T LDS + A++
Sbjct: 117 -----------RG--ISGGERKRVSIAEALVSRASVLCWDNSTRGLDSST------ALEI 157
Query: 857 ISVGRTTIVIAHRLATVKNANTIVVLDQGS 886
+ RT +A V T V L Q S
Sbjct: 158 LKCIRT-------MADVLKTTTFVSLYQAS 180
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 1e-09
Identities = 53/223 (23%), Positives = 101/223 (45%), Gaps = 43/223 (19%)
Query: 1321 FTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPN---QGKVMIEG 1377
T R ++ +LKDF VK G MV ++G GSG ST++ + + N +G + G
Sbjct: 12 TTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNG 71
Query: 1378 VDLREINVKWLRKQTALVGQE----PALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHK 1433
+ +E K+ + V +E P L T+R+ + + A ++
Sbjct: 72 IPYKEFAEKY-PGEIIYVSEEDVHFPTL---TVRETL-------------DFALRCKGNE 114
Query: 1434 FISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQD 1493
F+ G+ SGG+++R++IA A++ + VL D ++ LD + +
Sbjct: 115 FVR-------------GI--SGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILK 159
Query: 1494 ALRKVSK--RATTIVVAHRLS-TIREA-NMIAVVRDGAVVEYG 1532
+R ++ + TT V ++ S I + + + V+ +G + YG
Sbjct: 160 CIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 1e-09
Identities = 66/222 (29%), Positives = 109/222 (49%), Gaps = 37/222 (16%)
Query: 1325 SRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREIN 1384
+ P V L L V G ++ALVG +G+GKST++ ++ Y + G ++ G +E+
Sbjct: 13 AFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLG---KEVT 69
Query: 1385 VKWLR-KQTALVG---QEPALFAG-TIRDNIALGNPKAS------WAEIEEAAEEAYIHK 1433
+ Q A +G QE L TI +NI LG + W ++ A+ K
Sbjct: 70 FNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEAD-----K 124
Query: 1434 FISSL--PQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSAL-DLESEKH 1490
++ L + VGE LS G++Q + IA+ + S+V+++DE + AL D E+E
Sbjct: 125 LLARLNLRFSSDKLVGE----LSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETE-- 178
Query: 1491 VQDALRKVSK----RATTIV-VAHRLSTIRE-ANMIAVVRDG 1526
+L +V + + IV ++HRL I E + + V RDG
Sbjct: 179 ---SLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDG 217
|
Length = 501 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 1e-09
Identities = 62/219 (28%), Positives = 94/219 (42%), Gaps = 59/219 (26%)
Query: 1331 VLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMI----EGVDL-----R 1381
VL++ L V G V L G SGSGKST++ + Y P++G++++ E VDL R
Sbjct: 26 VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPR 85
Query: 1382 EINVKWLRKQT---------------AL-VGQEPALFAGTIRDNIALGNPKASWAEIEEA 1425
E+ +R+ T AL V EP L A G P E A
Sbjct: 86 EVLE--VRRTTIGYVSQFLRVIPRVSALDVVAEPLL---------ARGVP------REVA 128
Query: 1426 AEEAY-------IHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDE 1478
+A + + + SL SGG++QR+ IAR + +LLLDE
Sbjct: 129 RAKAADLLTRLNLPERLWSLAPA----------TFSGGEQQRVNIARGFIVDYPILLLDE 178
Query: 1479 ASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIREA 1517
+++LD + V + +R+ R +V +REA
Sbjct: 179 PTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREA 217
|
Length = 235 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 62.1 bits (152), Expect = 1e-09
Identities = 55/215 (25%), Positives = 93/215 (43%), Gaps = 70/215 (32%)
Query: 676 KGVTFAYPSRPETVILRSLNL-VIPSSKTLALVGTSGGGKSTVF---ALIERFYD----P 727
V+ P P+ IL+ ++L P +K + ++G +G GKST+ A +++ ++ P
Sbjct: 10 NRVSKVVP--PKKQILKDISLSFFPGAK-IGVLGLNGAGKSTLLRIMAGVDKEFEGEARP 66
Query: 728 TKGLITLDGHDLKSLQVKWLRTQIGMVGQEPILFAT-SILENVLMG-------------- 772
G+ ++G + QEP L ++ ENV G
Sbjct: 67 APGI------------------KVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEI 108
Query: 773 ---------------KENATMKEAVAACKAASAHSFIS------ELPLGYDTQVGDRGTQ 811
E ++E + A A S + P D +V T+
Sbjct: 109 YAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPW-DAKV----TK 163
Query: 812 LSGGQKQRIALARAMIKDPRILLLDEPTSALDSES 846
LSGG+++R+AL R +++ P +LLLDEPT+ LD+ES
Sbjct: 164 LSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAES 198
|
Length = 556 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 2e-09
Identities = 52/211 (24%), Positives = 89/211 (42%), Gaps = 28/211 (13%)
Query: 1342 GSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINV---------KWLRKQT 1392
G ++ +VG SGSGKST++ + P+ G E+ + + +R +
Sbjct: 29 GEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEW 88
Query: 1393 ALVGQEPALFAGTIRDNIALGN----PKA----SWAEIEEAAEEAYIHKFISSLPQGYET 1444
V Q P G A N A + I A ++ + + T
Sbjct: 89 GFVHQNPR--DGLRMRVSAGANIGERLMAIGARHYGNIRATA-----QDWLEEV-EIDPT 140
Query: 1445 QVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRA-- 1502
++ + SGG +QR+ IAR ++ R++ +DE + LD+ + + D LR + +
Sbjct: 141 RIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGL 200
Query: 1503 TTIVVAHRLSTIR-EANMIAVVRDGAVVEYG 1532
I+V H L R A + V++ G VVE G
Sbjct: 201 AVIIVTHDLGVARLLAQRLLVMQQGRVVESG 231
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 2e-09
Identities = 52/211 (24%), Positives = 96/211 (45%), Gaps = 20/211 (9%)
Query: 1337 LKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLRE--INVKWLRKQTAL 1394
L G ++ L+G +G+GK+T++ I P +G V + G + ++ ++ ++
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEF 60
Query: 1395 VGQEPALFAGTIRDNIA-----LGNP-KASWAEIEEAAEEAYIHKFISSLPQGYETQVGE 1448
P A T+ L P A +A + +A L + + VGE
Sbjct: 61 AWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRV-------GLTELADRPVGE 113
Query: 1449 SGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIV-V 1507
LSGGQ+QR+ +ARA+ VLLLDE + LD+ +++ + + +++ T I+
Sbjct: 114 ----LSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMT 169
Query: 1508 AHRLSTIREANMIAVVRDGAVVEYGSHETLL 1538
H L+ V+ +G V+ G+ + L
Sbjct: 170 THDLAQAMATCDRVVLLNGRVIADGTPQQLQ 200
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 2e-09
Identities = 56/196 (28%), Positives = 91/196 (46%), Gaps = 46/196 (23%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
IE + ++ + + ++ D K+ G +V ++G +G+GKST+ +I P+ G +
Sbjct: 323 IEAENLSKGFGDK---LLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTI 379
Query: 1374 MI-EGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEE---- 1428
I E V L A V Q RD AL K W EI +
Sbjct: 380 KIGETVKL------------AYVDQS--------RD--ALDPNKTVWEEISGGLDIIQLG 417
Query: 1429 -------AYIHKFISSLPQGYETQ--VGESGVQLSGGQKQRIAIARAILKGSRVLLLDEA 1479
AY+ +F G + Q VG QLSGG++ R+ +A+ + G VLLLDE
Sbjct: 418 KREVPSRAYVGRFNFK---GSDQQKKVG----QLSGGERNRVHLAKTLKSGGNVLLLDEP 470
Query: 1480 SSALDLESEKHVQDAL 1495
++ LD+E+ + +++AL
Sbjct: 471 TNDLDVETLRALEEAL 486
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 2e-09
Identities = 55/217 (25%), Positives = 103/217 (47%), Gaps = 17/217 (7%)
Query: 680 FAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDL 739
E L+ ++ I + + +G +G GK+T ++ PT G + + G
Sbjct: 26 LFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVP 85
Query: 740 KSLQVKWLRTQIGMV-GQEPIL-FATSILENVLMGKENATMKEAVAACKAASAHSFISE- 796
+ K+LR +IG+V GQ+ L + ++++ + + A + +SE
Sbjct: 86 WKRRKKFLR-RIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDE----LSEL 140
Query: 797 LPLG--YDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAI 854
L L DT V QLS GQ+ R +A A++ +P IL LDEPT LD ++ ++ +
Sbjct: 141 LDLEELLDTPV----RQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFL 196
Query: 855 DKISVGRTTIVI--AHRLATV-KNANTIVVLDQGSVV 888
+ + R T V+ +H + + A ++V+D+G ++
Sbjct: 197 KEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLL 233
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 2e-09
Identities = 52/232 (22%), Positives = 104/232 (44%), Gaps = 29/232 (12%)
Query: 1330 TVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINV-KWL 1388
V++D L V G +V L+G +G+GK+T +++ + G ++I+ D+ + +
Sbjct: 17 RVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARA 76
Query: 1389 RKQTALVGQEPALFAG-----------TIRDNIALGNPKASWAEIEEAAEEAYIHKFISS 1437
R+ + QE ++F IRD++ + + E EE +I S
Sbjct: 77 RRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDL---SAEQREDRANELMEEFHIEHLRDS 133
Query: 1438 LPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRK 1497
+ Q LSGG+++R+ IARA+ + +LLDE + +D S ++ +
Sbjct: 134 MGQS-----------LSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEH 182
Query: 1498 VSKRATTIVVA-HRL-STIREANMIAVVRDGAVVEYGSHETLLAS-HLNGVY 1546
+ +++ H + T+ +V G ++ +G+ +L H+ VY
Sbjct: 183 LRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQDEHVKRVY 234
|
Length = 241 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 2e-09
Identities = 46/189 (24%), Positives = 78/189 (41%), Gaps = 48/189 (25%)
Query: 705 ALVGTSGGGKSTVF-ALIERFYDPT-KGLITLDGHDLKSLQVKWLRTQIGMVGQEPILFA 762
AL+G SG GK+T+ L R G I ++G L K + G V Q+ +
Sbjct: 37 ALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQRSTGYVEQQDVHS- 91
Query: 763 TSILENVLMGKENATMKEAV---AACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQR 819
N T++EA+ A RG LS Q++R
Sbjct: 92 -----------PNLTVREALRFSALL----------------------RG--LSVEQRKR 116
Query: 820 IALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKI-SVGRTTIVIAHR--LATVKNA 876
+ + + P IL LDEPTS LDS++ + + + K+ G+ + H+ + +
Sbjct: 117 LTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKF 176
Query: 877 NTIVVLDQG 885
+ +++L +G
Sbjct: 177 DRLLLLKRG 185
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.4 bits (150), Expect = 3e-09
Identities = 49/234 (20%), Positives = 104/234 (44%), Gaps = 37/234 (15%)
Query: 1331 VLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKW--- 1387
++D V+ G ++ + G G+G++ + + + G+++++G +R + +
Sbjct: 274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIK 333
Query: 1388 --------LRKQTALVGQEPALFAGTIRDNIALGNPKA--SWAEIEEAAEEAYIHKFISS 1437
RK LV I +NI L + + I+ E A ++I
Sbjct: 334 AGIAYVPEDRKSEGLVLDMS------IAENITLASLRRFSRRGLIDRRKERALAERYIRR 387
Query: 1438 L---PQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDA 1494
L E +G LSGG +Q++ +AR + +VL+LDE + +D+ ++ +
Sbjct: 388 LRIKTPSPEQPIGT----LSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRL 443
Query: 1495 LRKVSKRATTIVVAHRLSTIRE----ANMIAVVRDGAVV-----EYGSHETLLA 1539
+R+++ I++ S + E ++ I V+R+G +V E + E ++A
Sbjct: 444 IRELAAEGKAILMI--SSELPELLGLSDRILVMREGRIVGELDREEATEEAIMA 495
|
Length = 500 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 57.8 bits (141), Expect = 3e-09
Identities = 42/191 (21%), Positives = 83/191 (43%), Gaps = 44/191 (23%)
Query: 704 LALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQV-KWLRTQIGMV----GQEP 758
+ + G G G++ + + P G ITLDG + +R I V +E
Sbjct: 29 VGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREG 88
Query: 759 ILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQ 818
++ S+ EN+ + + LSGG +Q
Sbjct: 89 LVLDLSVAENIALS-------------------------------------SLLSGGNQQ 111
Query: 819 RIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKIS-VGRTTIVIAHRLATV-KNA 876
++ LAR + +DPR+L+LDEPT +D +++ + + I +++ G+ ++I+ L +
Sbjct: 112 KVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLC 171
Query: 877 NTIVVLDQGSV 887
+ I+V+ +G +
Sbjct: 172 DRILVMYEGRI 182
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 3e-09
Identities = 47/168 (27%), Positives = 85/168 (50%), Gaps = 18/168 (10%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
+EL+ VTF Y + L +K G ++ L+GG+GSGKST+ L+ Y P G++
Sbjct: 323 LELRNVTFAYQD--NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEI 380
Query: 1374 MIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHK 1433
+++G + + RK + V + LF + P+ + A A + K
Sbjct: 381 LLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLL-------GPEG------KPANPALVEK 427
Query: 1434 FISSLPQGYETQVGE---SGVQLSGGQKQRIAIARAILKGSRVLLLDE 1478
++ L ++ ++ + S ++LS GQK+R+A+ A+ + +LLLDE
Sbjct: 428 WLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDE 475
|
Length = 547 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 5e-09
Identities = 43/166 (25%), Positives = 73/166 (43%), Gaps = 15/166 (9%)
Query: 1325 SRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREIN 1384
SR E + + + G + + G +G GK+T++ ++ P+ G+V G L E
Sbjct: 9 SRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR 68
Query: 1385 VKWLRKQTALVGQEPALFAG-TIRDNIALGNPKASWAE--IEEAAEEAYIHKFISSLPQG 1441
+ R +G P L + +N+ A+ IE+A + F LP
Sbjct: 69 DEPHR-NILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGF-EDLPAA 126
Query: 1442 YETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLES 1487
QLS GQ++R+A+AR L + + +LDE ++ALD
Sbjct: 127 ----------QLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAG 162
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 60.4 bits (146), Expect = 6e-09
Identities = 116/602 (19%), Positives = 213/602 (35%), Gaps = 93/602 (15%)
Query: 970 QKPRPRKFQLSEIWKLQRPEF-AMIIFGFILGMHAGAILSIFPLILGQALQVYFDDTAST 1028
+K EI L R F A+ F LG+ G + + A+ +
Sbjct: 1 KKAAIG-----EILALLRSPFPAITAFSIALGLAGGLAIIALLASINNAIH-----EENF 50
Query: 1029 LRRDVRYLSLALVGLGFGCIIFMTGQQGFCGWAGTKLTMRVRELLFRSILKQEPGWFDFE 1088
L + + GL ++F G F +AG + +R L IL D
Sbjct: 51 LGQGSL---FSFGGLCLLALLFRIGADIFPAYAGMHIIANLRIALCEKILGAPIEEIDRR 107
Query: 1089 ENSTGVLVSRLSIDSISFRSVLGDRFSVLLMGLSSAAVGLGVSLVLNWRLTLVAAALTPF 1148
+ + ID I+ + F + + L+ + L+ + + +
Sbjct: 108 GAHNLIPLLTHDIDQINAFLFI---FPPIAIALAIFFFCIAYLAYLSVPMFAITISAIII 164
Query: 1149 TLGASYLSLIINVGPKIDNSSYAKASSIASGAVSNIRTVTTFSAQEQIINSFDKALSEPK 1208
A L+ + + A+ A + F A+E I+ +
Sbjct: 165 GTAAQLLA-------FMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHG-------IR 210
Query: 1209 KKSVKRSQILGLTLGFSQGAMYVA---YTFTLWFGAYLVKQGHASFGVVYKIFLIL---- 1261
+ S I + A +A L F A G F ++ L
Sbjct: 211 RLSFAHGAI-------QESANNIADLHIIEILIFIA-AENFGQLLFFLLIGCALFAAAMF 262
Query: 1262 ------VLSSFSVGQLAGLAPDTSMAATAIPAVLQ--------------ITKRKP---LI 1298
+S+F + L P M +A+P + Q + +P L
Sbjct: 263 ASIDAAAISAFVLALLYIKGP-LEMLVSALPILAQAQIACQRLADFGERFNEPEPELELS 321
Query: 1299 DNVKGRKLERSKPLG-IELKMVTFTYPSRPEVT---VLKDFCLKVKGGSMVALVGGSGSG 1354
D L K + IELK V + PE + L L++ G +V +VG +G G
Sbjct: 322 DADNVLLLAHDKSVDSIELKDVHMNPKA-PEGSEGFALGPIDLRIAQGDIVFIVGENGCG 380
Query: 1355 KSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGN 1414
KST+ L Y P +G+++++G + + R + + + LF + +G
Sbjct: 381 KSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLF------DDLIGP 434
Query: 1415 PKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESG----VQLSGGQKQRIAIARAILKG 1470
+ A ++ A + ++ L + ++ + G LS GQ++R+A+ A L+
Sbjct: 435 DEGEHASLDNAQQ------YLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLED 488
Query: 1471 SRVLLLDEASSALDLESEKHVQDALRKVSKR--ATTIVVAHRLSTIREANMIAVVRDGAV 1528
+LL DE ++ D ++ + L KR T I+++H A+ I + G +
Sbjct: 489 RPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCI 548
Query: 1529 VE 1530
V+
Sbjct: 549 VK 550
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 8e-09
Identities = 44/183 (24%), Positives = 84/183 (45%), Gaps = 33/183 (18%)
Query: 705 ALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVK-WLRTQIGMVGQE----PI 759
AL+G +G GKST+ ++ Y P G I +DG +++ L + ++ QE P
Sbjct: 34 ALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPE 93
Query: 760 LFATSILENVLMGK--------ENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQ 811
+ ++ EN+ +G+ + + PL Y
Sbjct: 94 M---TVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKY---------- 140
Query: 812 LSGGQKQRIALARAMIKDPRILLLDEPTSALDS-ESE---SIVQQAIDKISVGRTTIVIA 867
LS GQ+Q + +A+A+ ++ R++ DEPTS+L + E E ++++ + GR + ++
Sbjct: 141 LSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAE---GRVILYVS 197
Query: 868 HRL 870
HR+
Sbjct: 198 HRM 200
|
Length = 501 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 1e-08
Identities = 56/215 (26%), Positives = 92/215 (42%), Gaps = 36/215 (16%)
Query: 1342 GSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINV---------KWLRKQT 1392
G ++ +VG SGSGK+T++ I P+ G V D + ++ + LR +
Sbjct: 32 GEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEW 91
Query: 1393 ALVGQEPALFAGTIRDNIALGN----PKAS----WAEIEEAA----EEAYIHKFISSLPQ 1440
V Q P G A GN A + I A EE I
Sbjct: 92 GFVHQNPR--DGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEID-------- 141
Query: 1441 GYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSK 1500
++ + SGG +QR+ IAR ++ R++ +DE + LD+ + + D LR + +
Sbjct: 142 --LDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVR 199
Query: 1501 R--ATTIVVAHRLSTIR-EANMIAVVRDGAVVEYG 1532
++V H L+ R A+ + V++ G VVE G
Sbjct: 200 ELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESG 234
|
Length = 258 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 1e-08
Identities = 56/198 (28%), Positives = 93/198 (46%), Gaps = 32/198 (16%)
Query: 690 ILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI-------TLDGHDLKSL 742
+LR+++L + + + + L G SG GKST+ + Y P +G I +D +
Sbjct: 26 VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPR 85
Query: 743 QVKWLRTQ-IGMVGQ----EPILFATSIL-ENVLMGKENATMKEAVAACKAASAHSFISE 796
+V +R IG V Q P + A ++ E +L + A AA ++
Sbjct: 86 EVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAA-------DLLTR 138
Query: 797 LPLGYDTQVGDRGTQL-----SGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQ 851
L + +R L SGG++QR+ +AR I D ILLLDEPT++LD+ + ++V
Sbjct: 139 L------NLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVV 192
Query: 852 QAID-KISVGRTTIVIAH 868
+ I + G + I H
Sbjct: 193 ELIREAKARGAALVGIFH 210
|
Length = 235 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 56.5 bits (136), Expect = 1e-08
Identities = 52/196 (26%), Positives = 89/196 (45%), Gaps = 24/196 (12%)
Query: 680 FAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDL 739
F Y +P +L+ ++ +P+ L L G++G GK+T+ LI +P KG I + +
Sbjct: 9 FDYHDQP---LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSI 65
Query: 740 KSLQVKWLRTQIGMVGQE----PILFATSILENVLMG-KENATMKEAVAACKAASAHSFI 794
K + + Q+ VG P L ++ EN L + C+ S I
Sbjct: 66 KKDLCTY-QKQLCFVGHRSGINPYL---TLRENCLYDIHFSPGAVGITELCRLFSLEHLI 121
Query: 795 SELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSES-ESIVQQA 853
+ P G LS GQK+++AL R + ++ LLDEP ALD S +I+ +
Sbjct: 122 -DYPCGL----------LSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKI 170
Query: 854 IDKISVGRTTIVIAHR 869
+ + G ++ +H+
Sbjct: 171 QEHRAKGGAVLLTSHQ 186
|
Length = 200 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 58.3 bits (142), Expect = 2e-08
Identities = 47/231 (20%), Positives = 103/231 (44%), Gaps = 17/231 (7%)
Query: 674 EFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLIT 733
E + ++ R T ++ ++ + + + + + G +G G+S + I P G I
Sbjct: 259 EVEDLS-VKDRRGVTA-VKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRIL 316
Query: 734 LDGHDLKSLQVKWLRTQIGM--VGQEPILFAT----SILENVLMG--KENATMKEAVAAC 785
L+G D+ R ++G+ V ++ S+ EN+++G + +
Sbjct: 317 LNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDR 376
Query: 786 KAASAHSFISELPLGYDTQVGDRGT---QLSGGQKQRIALARAMIKDPRILLLDEPTSAL 842
+A + EL +D + LSGG +Q++ LAR + + P +L+ +PT L
Sbjct: 377 RAIRKFA--RELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGL 434
Query: 843 DSESESIVQQAIDKIS-VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIG 891
D + + + + ++ G+ ++I+ L + ++ I V+ +G +V I
Sbjct: 435 DVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIV 485
|
Length = 501 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 2e-08
Identities = 53/211 (25%), Positives = 98/211 (46%), Gaps = 28/211 (13%)
Query: 1328 EVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKW 1387
+ V+ V+ G L+G +G+GK+T + ++ P+ G + + G + +
Sbjct: 19 DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPS-RARH 77
Query: 1388 LRKQTALVGQ----EPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHKFI--SSLPQG 1441
R++ +V Q +P T+R+N+ + + + AA A + + + L
Sbjct: 78 ARQRVGVVPQFDNLDPDF---TVRENLLV---FGRYFGLSAAAARALVPPLLEFAKLENK 131
Query: 1442 YETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKR 1501
+ +VGE LSGG K+R+ +ARA++ VL+LDE ++ LD ++ + + LR + R
Sbjct: 132 ADAKVGE----LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLAR 187
Query: 1502 ATTIVVA-----------HRLSTIREANMIA 1521
TI++ RL I E IA
Sbjct: 188 GKTILLTTHFMEEAERLCDRLCVIEEGRKIA 218
|
Length = 306 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 2e-08
Identities = 57/223 (25%), Positives = 104/223 (46%), Gaps = 21/223 (9%)
Query: 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGK 1372
+EL+ V F Y + L +K G +V L+GG+GSGKST+ L+ Y P G+
Sbjct: 322 TLELRNVRFAYQ--DNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGE 379
Query: 1373 VMIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIH 1432
++++G + ++ RK + V + LF + P+ A I
Sbjct: 380 ILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL-------GPEGK-------ASPQLIE 425
Query: 1433 KFISSLPQGYETQVGE---SGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEK 1489
K++ L ++T + + S ++LS GQK+R+A+ A+L+ +L+LDE ++ D +
Sbjct: 426 KWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRR 485
Query: 1490 HVQDALRKVSKR--ATTIVVAHRLSTIREANMIAVVRDGAVVE 1530
L + K T ++H A+ + +R+G + E
Sbjct: 486 EFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSE 528
|
Length = 546 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 2e-08
Identities = 54/211 (25%), Positives = 98/211 (46%), Gaps = 36/211 (17%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
IE + ++ + + +++ L+ +P + ++G +G GKST+F +I P G I
Sbjct: 323 IEAENLSKGFGDK---LLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTI 379
Query: 733 TLDGHDLKSLQVKWLRTQIGMVGQ--EPILFATSILENVLMGKENATM-KEAVAACKAAS 789
+ G +K + V Q + + ++ E + G + + K V +
Sbjct: 380 KI-GETVK----------LAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVG 428
Query: 790 AHSFISELPLGYDTQ--VGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESE 847
+F G D Q VG QLSGG++ R+ LA+ + +LLLDEPT+ LD E+
Sbjct: 429 RFNF-----KGSDQQKKVG----QLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETL 479
Query: 848 SIVQQAIDKISVGRTTIVIAH------RLAT 872
+++A+ + +VI+H R+AT
Sbjct: 480 RALEEALLEF--AGCAVVISHDRWFLDRIAT 508
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 2e-08
Identities = 40/179 (22%), Positives = 72/179 (40%), Gaps = 34/179 (18%)
Query: 698 IPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIGMVGQE 757
I S+ + ++G +G GK+T ++ P +G ++ + Q
Sbjct: 22 ISESEVIGILGPNGIGKTTFIKMLAGVLKPDEG------------DIEIELDTVSYKPQY 69
Query: 758 PILFATSILENVLMGKENATMKEAVAACKAASAHSFISEL--PLG----YDTQVGDRGTQ 811
+ ++L + F +E+ PL D +V +
Sbjct: 70 IKADYEGTVRDLLSSITK----------DFYTHPYFKTEIAKPLQIEQILDREV----PE 115
Query: 812 LSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVG--RTTIVIAH 868
LSGG+ QR+A+A + KD I LLDEP++ LD E + + I + + +T V+ H
Sbjct: 116 LSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEH 174
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 2e-08
Identities = 35/99 (35%), Positives = 53/99 (53%), Gaps = 20/99 (20%)
Query: 810 TQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKI--------SVGR 861
+ LSGG ++ AL RA++ +P +LLLDEPT+ LD I+ I +
Sbjct: 155 SSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLD----------IETIEWLEGFLKTFQG 204
Query: 862 TTIVIAHRLATVKN-ANTIVVLDQGSVVEI-GNHRQLLE 898
+ I I+H + ++N A IV LD+G +V GN+ Q L
Sbjct: 205 SIIFISHDRSFIRNMATRIVDLDRGKLVSYPGNYDQYLL 243
|
Length = 635 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 2e-08
Identities = 51/202 (25%), Positives = 88/202 (43%), Gaps = 53/202 (26%)
Query: 691 LRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQ 750
L++L++ IP + + + G SG GKST+ + E Y K L S K+ R +
Sbjct: 11 LQNLDVSIPLNVLVVVTGVSGSGKSTL--VNEGLYASGKAR-------LISFLPKFSRNK 61
Query: 751 IGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGT 810
+ + Q F+ ++ LGY T +G + +
Sbjct: 62 LIFIDQ----------------------------------LQFLIDVGLGYLT-LGQKLS 86
Query: 811 QLSGGQKQRIALARAMIKDPR--ILLLDEPTSALDSESESIVQQAIDKI----SVGRTTI 864
LSGG+ QR+ LA + +P + +LDEP++ L + + Q ++ I +G T I
Sbjct: 87 TLSGGELQRVKLASELFSEPPGTLFILDEPSTGLH---QQDINQLLEVIKGLIDLGNTVI 143
Query: 865 VIAHRLATVKNANTIVVLDQGS 886
+I H L + +A+ I+ GS
Sbjct: 144 LIEHNLDVLSSADWIIDFGPGS 165
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 2e-08
Identities = 57/234 (24%), Positives = 100/234 (42%), Gaps = 33/234 (14%)
Query: 652 RVPEIDPYNSEGRKLSSVSGK---------IEFKGVTFAYPSRPETVILRSLNLVIPSSK 702
RV EI+ GR + V G+ I+F+ + P+ V++ SL+ +PS
Sbjct: 422 RVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPN--GDVLIESLSFEVPSGN 479
Query: 703 TLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIGMVGQEPILFA 762
L + G +G GKS++F ++ + G +T + ++ V Q P +
Sbjct: 480 NLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTL 528
Query: 763 TSILENVL--MGKENATMK-----EAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGG 815
++ + ++ E+ + + I E G+ V D LSGG
Sbjct: 529 GTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLT-HILEREGGWSA-VQDWMDVLSGG 586
Query: 816 QKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHR 869
+KQRIA+AR P+ +LDE TSA+ + E + + + G T ++HR
Sbjct: 587 EKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE--FGITLFSVSHR 638
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 54.9 bits (132), Expect = 2e-08
Identities = 30/84 (35%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 1451 VQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRA--TTIVVA 1508
+ LSGG+ QR+AIA A+L+ + L DE S+ LD+E + A+R++S+ T +VV
Sbjct: 70 IDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVE 129
Query: 1509 HRLSTIREANMIAVVRDGAVVEYG 1532
H L+ + + V +G YG
Sbjct: 130 HDLAVLDYLSDRIHVFEGEPGVYG 153
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 4e-08
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 801 YDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVG 860
+ V + LSGG+ QR+A+A A+ ++ + LLDEP++ LD E IV + I +
Sbjct: 449 LERPVDE----LSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIEN 504
Query: 861 R--TTIVIAH 868
T +V+ H
Sbjct: 505 NEKTALVVDH 514
|
Length = 591 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 57.9 bits (141), Expect = 4e-08
Identities = 56/205 (27%), Positives = 93/205 (45%), Gaps = 48/205 (23%)
Query: 1332 LKDFCLKVKGGSM-----VALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVK 1386
L DF L+V+GG + + +VG +G GK+T L+ P++G+V +L+ I+ K
Sbjct: 350 LGDFSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDP---ELK-ISYK 405
Query: 1387 WLRKQTALVGQEP----ALFAGTIRDNIALGNPKAS----WAEIEEAAEEAYIHKFISSL 1438
P + GT+ D + +EI I L
Sbjct: 406 ------------PQYIKPDYDGTVEDLLRSITDDLGSSYYKSEI--------IKPL--QL 443
Query: 1439 PQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKV 1498
+ + V + LSGG+ QR+AIA + + + + LLDE S+ LD+E V A+R++
Sbjct: 444 ERLLDKNVKD----LSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRI 499
Query: 1499 --SKRATTIVVAHRLSTIREANMIA 1521
+ AT +VV H + I + I+
Sbjct: 500 AEEREATALVVDHDIYMI---DYIS 521
|
Length = 590 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.6 bits (139), Expect = 5e-08
Identities = 60/218 (27%), Positives = 100/218 (45%), Gaps = 48/218 (22%)
Query: 1342 GSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEG--VD-LREINVKWLRKQTALVGQE 1398
G ++LVG SGSGKST + R + G+++ G +D L ++ LR+ + Q+
Sbjct: 350 GETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQD 409
Query: 1399 PALFAG-----TIRDNI-------ALGNPKASWAEIEEAAEEA---------YIHKFISS 1437
P +A T+ D+I L KA+ A + E Y H+F
Sbjct: 410 P--YASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEF--- 464
Query: 1438 LPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRK 1497
SGGQ+QRI IARA+ +V++ DEA SALD+ + + L
Sbjct: 465 ----------------SGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLD 508
Query: 1498 VSKR--ATTIVVAHRLSTI-REANMIAVVRDGAVVEYG 1532
+ + + ++H ++ + R ++ +AV+ G +VE G
Sbjct: 509 LQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIG 546
|
Length = 623 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 57.1 bits (139), Expect = 5e-08
Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 12/84 (14%)
Query: 793 FISEL--PLG----YDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSES 846
+ SE+ PL D V D LSGG+ QR+A+A + +D + LLDEP++ LD E
Sbjct: 433 YKSEIIKPLQLERLLDKNVKD----LSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQ 488
Query: 847 ESIVQQAIDKISVGR--TTIVIAH 868
V +AI +I+ R T +V+ H
Sbjct: 489 RLAVAKAIRRIAEEREATALVVDH 512
|
Length = 590 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 5e-08
Identities = 61/231 (26%), Positives = 101/231 (43%), Gaps = 14/231 (6%)
Query: 684 SRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALI--ERFYDPTKGLITLDGHDLKS 741
S + ILR LNL + + A++G +G GKST+ A + Y+ T G + G DL
Sbjct: 10 SVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLE 69
Query: 742 LQVKWLRTQ-IGMVGQEPILFATSILENVLMGKENATMK-EAVAACKAASAHSFISE--- 796
L + + I M Q P+ + L NA + E
Sbjct: 70 LSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIA 129
Query: 797 -LPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAID 855
L + D SGG+K+R + + + +P + +LDE S LD ++ IV ++
Sbjct: 130 LLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVN 189
Query: 856 KISVG-RTTIVIAH--RLATVKNANTIVVLDQGSVVEIGNH---RQLLERG 900
+ G R+ I++ H R+ + + VL QG +V+ G+ +QL E+G
Sbjct: 190 SLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVKQLEEQG 240
|
Length = 248 |
| >gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 8e-08
Identities = 61/240 (25%), Positives = 97/240 (40%), Gaps = 54/240 (22%)
Query: 691 LRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQ 750
L+++++ IP + G SG GKS++ + + Y + L +
Sbjct: 11 LKNIDVDIPLGVLTCVTGVSGSGKSSL--INDTLYPALARRLHLKKEQPGNHDRIEGLEH 68
Query: 751 IG---MVGQEPI--------------------LFATS---------ILENVLMGKENA-- 776
I ++ Q PI LF LE GK A
Sbjct: 69 IDKVIVIDQSPIGRTPRSNPATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADV 128
Query: 777 ---TMKEAV----AACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKD 829
T++EA+ K A + ++ LGY ++G T LSGG+ QRI LA+ + K
Sbjct: 129 LDMTVEEALEFFENIPKIARKLQTLCDVGLGY-IKLGQPATTLSGGEAQRIKLAKELSKR 187
Query: 830 PR---ILLLDEPTSALDSESE----SIVQQAIDKISVGRTTIVIAHRLATVKNANTIVVL 882
+ +LDEPT+ L ++Q+ +DK G T +VI H L +K A+ I+ L
Sbjct: 188 STGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDK---GNTVVVIEHNLDVIKCADWIIDL 244
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 261 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 9e-08
Identities = 59/226 (26%), Positives = 93/226 (41%), Gaps = 58/226 (25%)
Query: 1342 GSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV---MIEGVD-----LREINVKWL-RKQT 1392
G ++ +VG SGSGK+T++ + P+ G+V M +G L E + L R +
Sbjct: 32 GEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEW 91
Query: 1393 ALVGQEPA----------------LFA------GTIRDNIALGNPKASW-AEIEEAAEEA 1429
V Q P L A G IR W +E A
Sbjct: 92 GFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRAT------AGDWLERVEIDAAR- 144
Query: 1430 YIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEK 1489
I LP + SGG +QR+ IAR ++ R++ +DE + LD+ +
Sbjct: 145 -----IDDLPTTF-----------SGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQA 188
Query: 1490 HVQDALRKVSKRA--TTIVVAHRLSTIRE-ANMIAVVRDGAVVEYG 1532
+ D LR + + ++V H L+ R A+ + V++ G VVE G
Sbjct: 189 RLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESG 234
|
Length = 258 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 9e-08
Identities = 55/200 (27%), Positives = 87/200 (43%), Gaps = 28/200 (14%)
Query: 677 GVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDG 736
+ F SR E + L+ + + + L + G +G GK+T+ ++ G I +DG
Sbjct: 16 ALAF---SRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDG 72
Query: 737 HDLKSLQVKWLRTQ-IGMVGQEPILFAT-SILENV-----LMGKENATMKEAVAACKAAS 789
R++ + +G P L A S LEN+ L G+ M + A +
Sbjct: 73 KTATRGD----RSRFMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLA 128
Query: 790 AHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESI 849
+ DT V QLS GQK+R+ALAR + + LLDEP + LD E ++
Sbjct: 129 GYE---------DTLV----RQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITL 175
Query: 850 VQQAID-KISVGRTTIVIAH 868
V + I + G +V H
Sbjct: 176 VNRMISAHLRGGGAALVTTH 195
|
Length = 214 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 1e-07
Identities = 55/202 (27%), Positives = 99/202 (49%), Gaps = 17/202 (8%)
Query: 706 LVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIG-MVGQEPILFATS 764
LVG +G GKST+ A + P G I G L++ L + Q+ FA
Sbjct: 27 LVGPNGAGKSTLLARMAGLL-PGSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMP 85
Query: 765 ILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALAR 824
+ + + + + ASA + ++E LG D ++G QLSGG+ QR+ LA
Sbjct: 86 VFQYLTL-----HQPDKTRTEAVASALNEVAEA-LGLDDKLGRSVNQLSGGEWQRVRLAA 139
Query: 825 AMIK-DPRI------LLLDEPTSALDSESESIVQQAIDKI-SVGRTTIVIAHRLA-TVKN 875
+++ P I LLLDEP ++LD ++ + + + ++ G ++ +H L T+++
Sbjct: 140 VVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRH 199
Query: 876 ANTIVVLDQGSVVEIGNHRQLL 897
A+ + +L QG ++ G ++L
Sbjct: 200 ADRVWLLKQGKLLASGRRDEVL 221
|
Length = 248 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 55.7 bits (134), Expect = 2e-07
Identities = 61/225 (27%), Positives = 112/225 (49%), Gaps = 16/225 (7%)
Query: 1298 IDNVKGRKLERSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKST 1357
+N+K + + LG + K+ T E T+L G ++A++G SGSGKST
Sbjct: 51 FENMKNKGSNIKRILGHKPKISDET-RQIQERTILNGVTGMASPGEILAVLGPSGSGKST 109
Query: 1358 VI-WLIQRFYDPN-QGKVMIEGVDLREINVKWLRKQTALVGQEPALFAG-TIRDNIA--- 1411
++ L R N G ++ R+ K + K+T V Q+ L+ T+R+ +
Sbjct: 110 LLNALAGRIQGNNFTGTILANN---RKP-TKQILKRTGFVTQDDILYPHLTVRETLVFCS 165
Query: 1412 -LGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQ-LSGGQKQRIAIARAILK 1469
L PK+ + + E+ I + L + T +G S ++ +SGG+++R++IA +L
Sbjct: 166 LLRLPKSLTKQEKILVAESVISEL--GLTKCENTIIGNSFIRGISGGERKRVSIAHEMLI 223
Query: 1470 GSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVA-HRLST 1513
+L+LDE +S LD + + L ++++ TIV + H+ S+
Sbjct: 224 NPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSS 268
|
Length = 659 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 2e-07
Identities = 50/204 (24%), Positives = 88/204 (43%), Gaps = 38/204 (18%)
Query: 1331 VLKDFCLKVKGGSMVALVGGSGSGKSTV------IWLIQ--RFYDPNQGKVMIEGVDLRE 1382
+++ +V G+ + + G +G GKS++ +W + R P +GK+
Sbjct: 467 LIESLSFEVPSGNNLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLF-------- 518
Query: 1383 INVKWLRKQTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGY 1442
V Q P + GT+RD I P +S + + + + ++ +
Sbjct: 519 -----------YVPQRPYMTLGTLRDQIIY--PDSSEDMKRRGLSDKDLEQILDNVQLTH 565
Query: 1443 --ETQVGESGVQ-----LSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDAL 1495
E + G S VQ LSGG+KQRIA+AR + +LDE +SA+ ++ E ++
Sbjct: 566 ILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLC 625
Query: 1496 RKVSKRATTIVVAHRLSTIREANM 1519
R+ T V+HR S +
Sbjct: 626 REF--GITLFSVSHRKSLWKYHEY 647
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (135), Expect = 2e-07
Identities = 24/62 (38%), Positives = 38/62 (61%)
Query: 811 QLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRL 870
+LSGG+ QR+A+A A+++D DEPTS LD V + I +++ G+ +V+ H L
Sbjct: 212 ELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDL 271
Query: 871 AT 872
A
Sbjct: 272 AV 273
|
Length = 590 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 2e-07
Identities = 61/229 (26%), Positives = 103/229 (44%), Gaps = 15/229 (6%)
Query: 687 ETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERF--YDPTKGLITLDGHDLKSLQV 744
E IL+ LNL I + A++G +G GKST+ +I Y +G I G + L+
Sbjct: 19 ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEP 78
Query: 745 KWLRTQIG--MVGQEPILFATSILENVLMGKENATMK-EAVAACKAASAHSFISE-LPL- 799
+ R +G + Q PI + L N+ K + + I+E L L
Sbjct: 79 E-ERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLV 137
Query: 800 GYDTQVGDRGTQ--LSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKI 857
G D R SGG+K+R + + + D + +LDE S LD ++ I+ + I+K+
Sbjct: 138 GMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKL 197
Query: 858 SVGRTTIV-IAH--RLATVKNANTIVVLDQGSVVEIGNHR--QLLERGG 901
+I+ I H RL + + V+ G +++ G+ + LE+ G
Sbjct: 198 MTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDAELAKELEKKG 246
|
Length = 252 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 3e-07
Identities = 57/218 (26%), Positives = 95/218 (43%), Gaps = 64/218 (29%)
Query: 1319 VTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGV 1378
V+ P P+ +LKD L G+ + ++G +G+GKST++ ++M GV
Sbjct: 10 VSKVVP--PKKEILKDISLSFFPGAKIGVLGLNGAGKSTLL------------RIM-AGV 54
Query: 1379 DLREINVKWLRKQTALVG---QEPALFAG-TIRDNI--ALGNPKASWAEIEE-------- 1424
D +E N + VG QEP L T+R+N+ + K + E
Sbjct: 55 D-KEFNGEARPAPGIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEP 113
Query: 1425 -------AAEEAYIHKFISS------------------LPQGYETQVGESGVQLSGGQKQ 1459
AE+A + + I + P + V + LSGG+++
Sbjct: 114 DADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPW-DADVTK----LSGGERR 168
Query: 1460 RIAIARAILKGSRVLLLDEASSALDLES----EKHVQD 1493
R+A+ R +L +LLLDE ++ LD ES E+H+Q+
Sbjct: 169 RVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQE 206
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 52.6 bits (126), Expect = 3e-07
Identities = 43/166 (25%), Positives = 77/166 (46%), Gaps = 17/166 (10%)
Query: 1321 FTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDL 1380
F Y +P +L+ + G ++ L G +G+GK+T++ LI +P +G+++ E +
Sbjct: 9 FDYHDQP---LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSI 65
Query: 1381 REINVKWLRKQTALVGQEPALFAG-TIRDNIALGNPKASWA-EIEEAAEEAYIHKFISSL 1438
++ + +KQ VG + T+R+N + A I E + I
Sbjct: 66 KKDLCTY-QKQLCFVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLI-DY 123
Query: 1439 PQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALD 1484
P G LS GQK+++A+ R + +++ LLDE ALD
Sbjct: 124 PCGL----------LSSGQKRQVALLRLWMSKAKLWLLDEPLVALD 159
|
Length = 200 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 3e-07
Identities = 25/76 (32%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query: 812 LSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISV--GRTTIVIAHR 869
LSGG+ QR+A+A A++++ L DEP++ LD E +AI ++S +T +V+ H
Sbjct: 72 LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHD 131
Query: 870 LATVKNANTIVVLDQG 885
LA + + + + +G
Sbjct: 132 LAVLDYLSDRIHVFEG 147
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 3e-07
Identities = 34/91 (37%), Positives = 51/91 (56%), Gaps = 11/91 (12%)
Query: 799 LGYDTQVGDRGTQLSGGQKQRIALARAMIKD---PRILLLDEPTSALDSES----ESIVQ 851
LGY ++G T LSGG+ QRI LA+ + K + +LDEPT+ L + ++Q
Sbjct: 818 LGY-IRLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQ 876
Query: 852 QAIDKISVGRTTIVIAHRLATVKNANTIVVL 882
+ +DK G T +VI H L +K A+ I+ L
Sbjct: 877 RLVDK---GNTVVVIEHNLDVIKTADYIIDL 904
|
This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 925 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.4 bits (132), Expect = 4e-07
Identities = 47/210 (22%), Positives = 90/210 (42%), Gaps = 38/210 (18%)
Query: 704 LALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQV-KWLRTQIGMVG----QEP 758
L + G G G++ + + + G I LDG ++ ++ I V E
Sbjct: 288 LGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEG 347
Query: 759 ILFATSILENVLM--------------GKENATMKEAVAA--CKAASAHSFISELPLGYD 802
++ SI EN+ + KE A + + K S I L
Sbjct: 348 LVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTL----- 402
Query: 803 TQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISV-GR 861
SGG +Q++ LAR + DP++L+LDEPT +D +++ + + I +++ G+
Sbjct: 403 ----------SGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGK 452
Query: 862 TTIVIAHRLATV-KNANTIVVLDQGSVVEI 890
++I+ L + ++ I+V+ +G +V
Sbjct: 453 AILMISSELPELLGLSDRILVMREGRIVGE 482
|
Length = 500 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 4e-07
Identities = 62/245 (25%), Positives = 107/245 (43%), Gaps = 50/245 (20%)
Query: 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKS-TVFALIERFYDP--- 727
+IE + + ++P ++ ++L + + LALVG SG GKS T A + P
Sbjct: 4 QIELRNIA-LQAAQP---LVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGIL--PAGV 57
Query: 728 --TKGLITLDGHDLKSLQVKWLRTQIGMVGQEP-------ILFATSILENVL-MGKE--N 775
T G + LDG + ++ +I + Q P T E L +GK +
Sbjct: 58 RQTAGRVLLDGKPVAPCALR--GRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADD 115
Query: 776 ATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLL 835
AT+ A+ A +A + P ++SGG QR+ +A A++ + ++
Sbjct: 116 ATLTAALEAVGLENAARVLKLYPF-----------EMSGGMLQRMMIALALLCEAPFIIA 164
Query: 836 DEPTSALDSES--------ESIVQQAIDKISVGRTTIVIAHRLATV-KNANTIVVLDQGS 886
DEPT+ LD + ESIVQ+ +++ H + V + A+ + V+ G
Sbjct: 165 DEPTTDLDVVAQARILDLLESIVQKR------ALGMLLVTHDMGVVARLADDVAVMSHGR 218
Query: 887 VVEIG 891
+VE G
Sbjct: 219 IVEQG 223
|
Length = 254 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 50.8 bits (121), Expect = 4e-07
Identities = 35/191 (18%), Positives = 60/191 (31%), Gaps = 59/191 (30%)
Query: 700 SSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIGMVGQEPI 759
+ + +VG G GK+T+ + R P G + I
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGV--------------------------I 34
Query: 760 LFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQR 819
+ ++ + + VG + SG + R
Sbjct: 35 YIDGEDILEEVLDQLLLII--------------------------VGGKKASGSGELRLR 68
Query: 820 IALARAMIKDPRILLLDEPTSALDSESESIVQQAID-------KISVGRTTIVIAHRLAT 872
+ALA A P +L+LDE TS LD+E E+++ + K T I+ +
Sbjct: 69 LALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKD 128
Query: 873 VKNANTIVVLD 883
+ A D
Sbjct: 129 LGPALLRRRFD 139
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 4e-07
Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 811 QLSGGQKQRIALARAMI---KDPRIL-LLDEPTSALDSESESIVQQAIDKISV-GRTTIV 865
QLSGG+K+ ALA + PR L +LDE LD + +AI + V G IV
Sbjct: 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIV 136
Query: 866 IAHRLATVKNANTIV 880
I H + A+ ++
Sbjct: 137 ITHLPELAELADKLI 151
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 5e-07
Identities = 55/179 (30%), Positives = 94/179 (52%), Gaps = 18/179 (10%)
Query: 702 KTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDL-----KSLQVKWLRTQIGMVGQ 756
+ +ALVG +G GKST+ ++ Y G I G ++ KS Q IG++ Q
Sbjct: 31 RVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQ----EAGIGIIHQ 86
Query: 757 EPILFAT-SILENVLMGKENATMKEAVAACKA-ASAHSFISELPLGYDTQ--VGDRGTQL 812
E L +I EN+ +G+E + K A A ++ L L + + VG+ L
Sbjct: 87 ELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGE----L 142
Query: 813 SGGQKQRIALARAMIKDPRILLLDEPTSAL-DSESESIVQQAIDKISVGRTTIVIAHRL 870
S G++Q + +A+ + + +++++DEPT AL D+E+ES+ + + S GR + I+HRL
Sbjct: 143 SIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRL 201
|
Length = 501 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 6e-07
Identities = 51/184 (27%), Positives = 88/184 (47%), Gaps = 26/184 (14%)
Query: 1307 ERSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFY 1366
RS + E++ V + + ++KDF +V+ G +AL+G +G GK+T++ L+
Sbjct: 313 SRSGKIVFEMENVNYQIDGK---QLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQL 369
Query: 1367 DPNQGKVMIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAA 1426
+ G++ G L V + + A + E T+ DN+A G E+
Sbjct: 370 QADSGRIHC-GTKL---EVAYFDQHRAELDPEK-----TVMDNLAEGK-----QEVMVNG 415
Query: 1427 EE----AYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSA 1482
Y+ F+ P+ T V LSGG++ R+ +AR LK S +L+LDE ++
Sbjct: 416 RPRHVLGYLQDFLFH-PKRAMTPVK----ALSGGERNRLLLARLFLKPSNLLILDEPTND 470
Query: 1483 LDLE 1486
LD+E
Sbjct: 471 LDVE 474
|
Length = 635 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 6e-07
Identities = 68/226 (30%), Positives = 107/226 (47%), Gaps = 31/226 (13%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGL- 731
I +Y RP IL +L+ + + +VG +G GKST+ +LI D +G
Sbjct: 261 IVLNNGVVSYNDRP---ILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITG--DHPQGYS 315
Query: 732 --ITLDGHDLKSLQVKW-LRTQIGMVGQEPIL---FATSILENVLMGK-ENATMKEAVAA 784
+TL G S + W ++ IG V L +TS+ +L G ++ + +AV+
Sbjct: 316 NDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSD 375
Query: 785 CKAASAHSFISELPLGYDTQVGDRGTQ-LSGGQKQRIAL-ARAMIKDPRILLLDEPTSAL 842
+ A ++ L G D + D LS GQ QR+AL RA++K P +L+LDEP L
Sbjct: 376 RQQKLAQQWLDIL--GIDKRTADAPFHSLSWGQ-QRLALIVRALVKHPTLLILDEPLQGL 432
Query: 843 DSESESIVQQAIDK-ISVGRTTIV------------IAHRLATVKN 875
D + +V++ +D IS G T ++ I HRL V +
Sbjct: 433 DPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPD 478
|
Length = 490 |
| >gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 8e-07
Identities = 61/236 (25%), Positives = 104/236 (44%), Gaps = 52/236 (22%)
Query: 1332 LKDFCLKVKGGSMVALVGGSGSGKSTVI------WLIQRFY----DPNQGKVMIEGVDLR 1381
LK+ + + G + + G SGSGKS++I L +R + P IEG L
Sbjct: 11 LKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHD-RIEG--LE 67
Query: 1382 EINVKWLRKQTALVGQ----EPALFAG---TIRD------NIALGNPK--------ASWA 1420
I+ K + + +G+ PA + G IR+ N + S A
Sbjct: 68 HID-KVIVIDQSPIGRTPRSNPATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIA 126
Query: 1421 EI-EEAAEEAY--------IHKFISSLPQ---GYETQVGESGVQLSGGQKQRIAIARAIL 1468
++ + EEA I + + +L GY ++G+ LSGG+ QRI +A+ +
Sbjct: 127 DVLDMTVEEALEFFENIPKIARKLQTLCDVGLGY-IKLGQPATTLSGGEAQRIKLAKELS 185
Query: 1469 KGSR---VLLLDEASSALDLESEKHVQDALRKVSKRATTIVVA-HRLSTIREANMI 1520
K S + +LDE ++ L K + + L+++ + T+VV H L I+ A+ I
Sbjct: 186 KRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKCADWI 241
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 261 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 1e-06
Identities = 48/176 (27%), Positives = 87/176 (49%), Gaps = 25/176 (14%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
++++ V+FT +R + + L V G + A++G SG GK+T++ LI P+ G++
Sbjct: 8 VDMRGVSFTRGNRC---IFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEI 64
Query: 1374 MIEGVDLREINVKWL---RKQTALVGQEPALFAG-TIRDNIALGNPKASWAEIEEAA-EE 1428
+ +G ++ ++ L RK+ +++ Q ALF + DN+A + E
Sbjct: 65 LFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVA-------YPLREHTQLPA 117
Query: 1429 AYIHKFISSLPQGYETQVGESGV------QLSGGQKQRIAIARAILKGSRVLLLDE 1478
+H S++ E VG G +LSGG +R A+ARAI +++ DE
Sbjct: 118 PLLH---STVMMKLEA-VGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDE 169
|
Length = 269 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 1e-06
Identities = 46/194 (23%), Positives = 79/194 (40%), Gaps = 36/194 (18%)
Query: 1339 VKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEG------------------VDL 1380
+ G ++ LVG +G GKST + ++ PN GK L
Sbjct: 23 PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKL 82
Query: 1381 REINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAE-EAYIHKFISSLP 1439
E +VK + K V P G + + + + + E+ + E + + I
Sbjct: 83 LEGDVKVIVK-PQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNID--- 138
Query: 1440 QGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVS 1499
QLSGG+ QR+AIA A+ + + DE SS LD++ + +R+++
Sbjct: 139 ------------QLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELA 186
Query: 1500 KRA-TTIVVAHRLS 1512
+ +VV H L+
Sbjct: 187 EDDNYVLVVEHDLA 200
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 1e-06
Identities = 61/253 (24%), Positives = 116/253 (45%), Gaps = 39/253 (15%)
Query: 1296 PLIDNVKGRKLERSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGK 1355
P I + +KL R +E++ +T + + P + K+ L ++ G +A++G +G GK
Sbjct: 305 PFIRFEQDKKLHR---NALEVENLTKGFDNGP---LFKNLNLLLEAGERLAIIGENGVGK 358
Query: 1356 STVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNP 1415
+T++ + +P+ G VKW A +G A +++ L +
Sbjct: 359 TTLLRTLVGELEPDSGT------------VKWSEN--ANIGYYAQDHAYDFENDLTLFDW 404
Query: 1416 KASWAEIE--EAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRV 1473
+ W + E A + + + S + + +S LSGG+K R+ + +++ V
Sbjct: 405 MSQWRQEGDDEQAVRGTLGRLLFS-----QDDIKKSVKVLSGGEKGRMLFGKLMMQKPNV 459
Query: 1474 LLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIRE-----ANMIAVVRDGAV 1528
L++DE ++ +D+ES + + AL K T I V+H RE A I + V
Sbjct: 460 LVMDEPTNHMDMESIESLNMALEKY--EGTLIFVSHD----REFVSSLATRIIEITPDGV 513
Query: 1529 VEY-GSHETLLAS 1540
V++ G++E L S
Sbjct: 514 VDFSGTYEEYLRS 526
|
Length = 530 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 2e-06
Identities = 61/254 (24%), Positives = 115/254 (45%), Gaps = 58/254 (22%)
Query: 678 VTFAYPSRPET---VILRSLNLV------------------IPSSKTLALVGTSGGGKS- 715
+T YP P VIL + NL + + L + G G G++
Sbjct: 242 ITSLYPHEPHEIGDVILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTE 301
Query: 716 TVFALIERFYDPTKGLITLDGH--DLKSLQVKWLRTQIGMVGQE-------PIL-----F 761
V AL + +G + ++G D+++ + +R I MV ++ PIL
Sbjct: 302 LVQALFGAYPGKFEGNVFINGKPVDIRNPA-QAIRAGIAMVPEDRKRHGIVPILGVGKNI 360
Query: 762 ATSILEN------VLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGG 815
S+L++ + E + A+ K +A F LP+G +LSGG
Sbjct: 361 TLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPF---LPIG----------RLSGG 407
Query: 816 QKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISV-GRTTIVIAHRLATVK 874
+Q+ LA+ ++ +PR+L+LDEPT +D ++ + + I++++ G IV++ LA V
Sbjct: 408 NQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVL 467
Query: 875 N-ANTIVVLDQGSV 887
++ ++V+ +G +
Sbjct: 468 GLSDRVLVIGEGKL 481
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 2e-06
Identities = 52/196 (26%), Positives = 92/196 (46%), Gaps = 31/196 (15%)
Query: 691 LRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGH--DLKSLQVKWLR 748
L ++NL + AL+G +G GKST+ + Y G I G D KS + + L
Sbjct: 14 LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSK-EALE 72
Query: 749 TQIGMVGQE-PILFATSILENVLMGK--------ENATMKEAVAACKAASAHSFISELPL 799
I MV QE ++ S+++N+ +G+ + M A EL +
Sbjct: 73 NGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKA--------IFDELDI 124
Query: 800 GYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESE-----SIVQQAI 854
D + + LS Q Q I +A+A + +I+++DEPTS+L +E E +I+++
Sbjct: 125 DIDPR--AKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSL-TEKEVNHLFTIIRKLK 181
Query: 855 DKISVGRTTIVIAHRL 870
++ G + I+H++
Sbjct: 182 ER---GCGIVYISHKM 194
|
Length = 491 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 2e-06
Identities = 43/172 (25%), Positives = 85/172 (49%), Gaps = 23/172 (13%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
+ L+ V+ ++ R VL D L++K G ++ L+G +G+GKST++ ++ P++G +
Sbjct: 5 VSLENVSVSFGQR---RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI 61
Query: 1374 MIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHK 1433
G ++ + ++ ++ L P T+ + L P +I A +
Sbjct: 62 KRNG----KLRIGYVPQKLYLDTTLPL----TVNRFLRL-RPGTKKEDILPALKRVQAGH 112
Query: 1434 FISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDL 1485
I + Q +LSGG+ QR+ +ARA+L ++L+LDE + +D+
Sbjct: 113 LIDAPMQ-----------KLSGGETQRVLLARALLNRPQLLVLDEPTQGVDV 153
|
Length = 251 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 51.7 bits (125), Expect = 2e-06
Identities = 22/60 (36%), Positives = 37/60 (61%)
Query: 1452 QLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRL 1511
+LSGG+ QR+AIA A+L+ + DE +S LD+ +V +R++++ +VV H L
Sbjct: 212 ELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDL 271
|
Length = 590 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 2e-06
Identities = 58/251 (23%), Positives = 102/251 (40%), Gaps = 63/251 (25%)
Query: 1328 EVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLI--QRFYDPNQGKVMIEGVDLREI-- 1383
E +LK L + G + A++G +GSGKST+ +I Y +G ++ +G + ++
Sbjct: 19 ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEP 78
Query: 1384 ----------------------NVKWLR-------KQTALVGQEPALFAGTIRDNIALGN 1414
N +LR K L +P F I + + L
Sbjct: 79 EERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVG 138
Query: 1415 PKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVL 1474
S F+S V E SGG+K+R I + L S +
Sbjct: 139 MDPS---------------FLSR-------NVNEG---FSGGEKKRNEILQMALLDSELA 173
Query: 1475 LLDEASSALDLESEKHVQDALRKVSKRATTIV-VAH--RLSTIREANMIAVVRDGAVVEY 1531
+LDE S LD+++ K + + + K+ +I+ + H RL + + + V+++G +++
Sbjct: 174 ILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKT 233
Query: 1532 GSHETLLASHL 1542
G E LA L
Sbjct: 234 GDAE--LAKEL 242
|
Length = 252 |
| >gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 2e-06
Identities = 46/197 (23%), Positives = 85/197 (43%), Gaps = 20/197 (10%)
Query: 1328 EVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKW 1387
E L D + ++ + G +G GKS+++ +I P+ G + + ++ I +
Sbjct: 12 EQKNLFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPY 71
Query: 1388 LRKQTALVGQEPAL-FAGTIRDNIALGNPKASWAEIEEAAEEAY--IHKFISSLPQGYET 1444
+G L T+ +N+ W+EI +AE Y IH F
Sbjct: 72 C----TYIGHNLGLKLEMTVFENLKF------WSEIYNSAETLYAAIHYF------KLHD 115
Query: 1445 QVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDAL-RKVSKRAT 1503
+ E LS G ++ +AIAR I S + LLDE + L E+ + + + K +
Sbjct: 116 LLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGI 175
Query: 1504 TIVVAHRLSTIREANMI 1520
++ +H S+I+ A ++
Sbjct: 176 VLLSSHLESSIKSAQIL 192
|
Length = 195 |
| >gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 3e-06
Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 11/89 (12%)
Query: 799 LGYDTQVGDRGTQLSGGQKQRIALARAMIK---DPRILLLDEPTSALDSESE----SIVQ 851
LGY ++G T LSGG+ QR+ LA+ + K + +LDEPT+ L + ++
Sbjct: 811 LGY-IKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLH 869
Query: 852 QAIDKISVGRTTIVIAHRLATVKNANTIV 880
+ +DK G T IVI H L +K A+ I+
Sbjct: 870 RLVDK---GNTVIVIEHNLDVIKTADWII 895
|
Length = 935 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 50.9 bits (123), Expect = 5e-06
Identities = 56/215 (26%), Positives = 96/215 (44%), Gaps = 58/215 (26%)
Query: 1319 VTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGV 1378
V+ P P+ +LKD L G+ + ++G +G+GKST++ ++M GV
Sbjct: 12 VSKVVP--PKKQILKDISLSFFPGAKIGVLGLNGAGKSTLL------------RIM-AGV 56
Query: 1379 DLREINVKWLRKQTALVG---QEPALFAG-TIRDNI--ALGNPKASWAEIEE-----AAE 1427
D +E + VG QEP L T+R+N+ + KA+ E A
Sbjct: 57 D-KEFEGEARPAPGIKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEP 115
Query: 1428 EAYIHKFISSLPQG-------------YETQV-----------GESGV-QLSGGQKQRIA 1462
+A + QG ++Q+ ++ V +LSGG+++R+A
Sbjct: 116 DADFDALAAE--QGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVTKLSGGERRRVA 173
Query: 1463 IARAILKGSRVLLLDEASSALDLES----EKHVQD 1493
+ R +L+ +LLLDE ++ LD ES E+ + D
Sbjct: 174 LCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHD 208
|
Length = 556 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 5e-06
Identities = 50/210 (23%), Positives = 87/210 (41%), Gaps = 72/210 (34%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
+E + +T + + P + ++LNL++ + + LA++G +G GK+T+ + +P G
Sbjct: 320 LEVENLTKGFDNGP---LFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSG-- 374
Query: 733 TLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHS 792
VKW ENA + A+
Sbjct: 375 ----------TVKW--------------------------SENA----NIGYYAQDHAYD 394
Query: 793 FISELPLGYD-----TQVGD-----RGT----------------QLSGGQKQRIALARAM 826
F ++L L +D Q GD RGT LSGG+K R+ + M
Sbjct: 395 FENDLTL-FDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLM 453
Query: 827 IKDPRILLLDEPTSALDSESESIVQQAIDK 856
++ P +L++DEPT+ +D ES + A++K
Sbjct: 454 MQKPNVLVMDEPTNHMDMESIESLNMALEK 483
|
Length = 530 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 6e-06
Identities = 24/64 (37%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 1452 QLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSK-RATTIVVAHR 1510
+LSGG+ QR+AIA A+L+ + V DE SS LD+ + +R++++ IVV H
Sbjct: 213 ELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHD 272
Query: 1511 LSTI 1514
L+ +
Sbjct: 273 LAVL 276
|
Length = 591 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 7e-06
Identities = 53/189 (28%), Positives = 77/189 (40%), Gaps = 36/189 (19%)
Query: 1307 ERSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFY 1366
+R P I +F YP P + K+ + S +A+VG +G GKST++ LI
Sbjct: 502 DRPGPPIISFSDASFGYPGGP--LLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGEL 559
Query: 1367 DPNQGKVMIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALG-NPKASWAEIEEA 1425
P+ G V R V+ A+F+ D + L NP
Sbjct: 560 QPSSGTV------FRSAKVRM------------AVFSQHHVDGLDLSSNPLLYMMRCFPG 601
Query: 1426 AEEAYIHKFISSLPQGYETQVGESG-------VQLSGGQKQRIAIARAILKGSRVLLLDE 1478
E + + S G +G LSGGQK R+A A+ K +LLLDE
Sbjct: 602 VPEQKLRAHLGSF--------GVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDE 653
Query: 1479 ASSALDLES 1487
S+ LDL++
Sbjct: 654 PSNHLDLDA 662
|
Length = 718 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 46.7 bits (112), Expect = 9e-06
Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 3/60 (5%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
IEL+ ++ TY + +LKD L + G + LVG +G+GKST++ LI +P++G V
Sbjct: 1 IELENLSKTYGGKL---LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIV 57
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 9e-06
Identities = 25/70 (35%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 802 DTQVGDRG-TQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAI-DKISV 859
D VG G T LS Q++R+ +A ++ +P I+ +DEPTS LD+ + +IV + + + +
Sbjct: 1009 DAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1068
Query: 860 GRTTIVIAHR 869
GRT + H+
Sbjct: 1069 GRTVVCTIHQ 1078
|
Length = 1470 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 1e-05
Identities = 49/182 (26%), Positives = 84/182 (46%), Gaps = 35/182 (19%)
Query: 1337 LKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVM-----IEGVDLREI-------- 1383
L+V+ +V+L+G +G+GK+TV + FY P G ++ IEG+ +I
Sbjct: 26 LEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRT 85
Query: 1384 --NVKWLRKQTA----LVGQ----EPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHK 1433
+V+ R+ T LV Q + LF+G ++ P AE E A +
Sbjct: 86 FQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLK------TPAFRRAESEALDRAATWLE 139
Query: 1434 FISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQD 1493
+ L ++G L+ GQ++R+ IAR ++ +L+LDE ++ L+ E D
Sbjct: 140 RVGLLEHANR----QAG-NLAYGQQRRLEIARCMVTQPEILMLDEPAAGLN-PKETKELD 193
Query: 1494 AL 1495
L
Sbjct: 194 EL 195
|
Length = 255 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 1e-05
Identities = 59/241 (24%), Positives = 107/241 (44%), Gaps = 41/241 (17%)
Query: 1328 EVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLI--QRFYDPNQGKVMIEGVDLREINV 1385
+ +LK L VK G + A++G +GSGKST+ I Y+ G ++ +G DL E+
Sbjct: 12 DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEP 71
Query: 1386 -KWLRKQTALVGQEPALFAGT-----IRDNI-----ALGNPKASWAEIEEAAE------- 1427
+ R L Q P G +R + A G + + +
Sbjct: 72 DERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLG 131
Query: 1428 --EAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDL 1485
E ++++ S+ +G+ SGG+K+R I + L ++ +LDE S LD+
Sbjct: 132 MDEEFLNR---SVNEGF-----------SGGEKKRNEILQMALLEPKLAILDEIDSGLDI 177
Query: 1486 ESEKHVQDALRKV-SKRATTIVVAH--RLSTIREANMIAVVRDGAVVEYGSHETLLASHL 1542
++ K V + + ++ + +++ H RL + + + V+ DG +V+ G E LA L
Sbjct: 178 DALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVE--LAKEL 235
Query: 1543 N 1543
Sbjct: 236 E 236
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 1e-05
Identities = 34/90 (37%), Positives = 50/90 (55%), Gaps = 4/90 (4%)
Query: 780 EAVAACKA-ASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEP 838
E + A A A A S ++ L + QV SGG + RIALARA+ +P +LLLDEP
Sbjct: 313 ELIDAYTAEARAASILAGLSFTPEMQV-KATKTFSGGWRMRIALARALFIEPDLLLLDEP 371
Query: 839 TSALDSESESIVQQAIDKISVGRTTIVIAH 868
T+ LD + ++ + K +T IV++H
Sbjct: 372 TNHLDLHAVLWLETYLLKWP--KTFIVVSH 399
|
Length = 718 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 1e-05
Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 811 QLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKIS-VGRTTIVIAHR 869
+LSGG+ QR+A+A A+++D + DEP+S LD + I +++ G+ IV+ H
Sbjct: 213 ELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHD 272
Query: 870 LAT 872
LA
Sbjct: 273 LAV 275
|
Length = 591 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 2e-05
Identities = 54/195 (27%), Positives = 86/195 (44%), Gaps = 43/195 (22%)
Query: 697 VIPSSKTLALVGTSGGGKSTVF-ALIERFYDPTKGLITLD-----GHDLKSLQVKWLRTQ 750
V P + T AL+G SG GK+T+ L ER T G+IT G L S +
Sbjct: 786 VKPGTLT-ALMGASGAGKTTLLNVLAERV---TTGVITGGDRLVNGRPLDSS----FQRS 837
Query: 751 IGMVGQEPILFATSILENVLMGKENATMKEAV--AACKAASAHSFISE------------ 796
IG V Q+ + TS T++E++ +A SE
Sbjct: 838 IGYVQQQDLHLPTS------------TVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLL 885
Query: 797 -LPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILL-LDEPTSALDSESESIVQQAI 854
+ D VG G L+ Q++R+ + ++ P++LL LDEPTS LDS++ + + +
Sbjct: 886 EMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLM 945
Query: 855 DKIS-VGRTTIVIAH 868
K++ G+ + H
Sbjct: 946 RKLADHGQAILCTIH 960
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 2e-05
Identities = 45/171 (26%), Positives = 73/171 (42%), Gaps = 14/171 (8%)
Query: 1327 PEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLI----QRFYDPNQGKVMIEGVDLRE 1382
+LK +K G + ++G GSG ST++ I F+ +G + +G+ E
Sbjct: 72 KTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEE 131
Query: 1383 INVKWLRKQTALVGQE----PALFAGTIRDNIAL----GNPKASWAEIEEAAEEAYIHKF 1434
I K R + P L G D A N + E A A ++
Sbjct: 132 I-KKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMA 190
Query: 1435 ISSLPQGYETQVGESGVQ-LSGGQKQRIAIARAILKGSRVLLLDEASSALD 1484
L T+VG V+ +SGG+++R++IA A L G+++ D A+ LD
Sbjct: 191 TYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLD 241
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 2e-05
Identities = 61/209 (29%), Positives = 92/209 (44%), Gaps = 31/209 (14%)
Query: 1332 LKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQ 1391
L + +V G +V ++G +GSGKST+ LI PN+G V I+G + +
Sbjct: 40 LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKG------SAALIAIS 93
Query: 1392 TALVGQEPALFAGTIRDNIAL-----GNPKASWAEI-EEAAEEAYIHKFISSLPQGYETQ 1445
+ L GQ + +NI L G K EI E E A I KFI + Y
Sbjct: 94 SGLNGQLTGI------ENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTY--- 144
Query: 1446 VGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTI 1505
S G K R+ A ++ +L++DEA S D K D + + ++ TI
Sbjct: 145 --------SSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTI 196
Query: 1506 -VVAHRLSTIREANMIAV-VRDGAVVEYG 1532
++H LS ++ A+ + G V EYG
Sbjct: 197 FFISHSLSQVKSFCTKALWLHYGQVKEYG 225
|
Length = 549 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 3e-05
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 13/72 (18%)
Query: 772 GKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPR 831
E T+ E++ K +A EL + +LSGG +Q+ LA+ ++ +P+
Sbjct: 379 AAELKTILESIQRLKVKTASP---ELAIA----------RLSGGNQQKAVLAKCLLLNPK 425
Query: 832 ILLLDEPTSALD 843
IL+LDEPT +D
Sbjct: 426 ILILDEPTRGID 437
|
Length = 506 |
| >gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 3e-05
Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 18/133 (13%)
Query: 1422 IEEAAE--EAY--IHKFISSLPQ---GYETQVGESGVQLSGGQKQRIAIARAILK---GS 1471
+EEA E EA I + + +L GY ++G+ LSGG+ QRI +A+ + K G
Sbjct: 793 VEEAYEFFEAVPSISRKLQTLCDVGLGY-IRLGQPATTLSGGEAQRIKLAKELSKRSTGR 851
Query: 1472 RVLLLDEASSALDLESEKHVQDAL-RKVSKRATTIVVAHRLSTIREANMI------AVVR 1524
+ +LDE ++ L + K + + L R V K T +V+ H L I+ A+ I
Sbjct: 852 TLYILDEPTTGLHFDDIKKLLEVLQRLVDKGNTVVVIEHNLDVIKTADYIIDLGPEGGDG 911
Query: 1525 DGAVVEYGSHETL 1537
G VV G+ E +
Sbjct: 912 GGTVVASGTPEEV 924
|
This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 925 |
| >gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 3e-05
Identities = 63/280 (22%), Positives = 120/280 (42%), Gaps = 45/280 (16%)
Query: 691 LRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQ 750
L +++ +P + + ++G +G GKST+ LI P KG + D+K
Sbjct: 40 LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTV-----DIK---------- 84
Query: 751 IGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGT 810
G ++ +S L L G EN +K + I E+ + D G
Sbjct: 85 ----GSAALIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEI-----IEFADIGK 135
Query: 811 QL-------SGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKIS----V 859
+ S G K R+ A ++ +P IL++DE S D ++ ++ +DK++
Sbjct: 136 FIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGD---QTFTKKCLDKMNEFKEQ 192
Query: 860 GRTTIVIAHRLATVKNANTIVV-LDQGSVVEIGNHRQLLERGGAYHDLVKLASEAVSQPQ 918
G+T I+H L+ VK+ T + L G V E G+ +++++ Y + +K +S +
Sbjct: 193 GKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDH---YDEFLK-KYNQMSVEE 248
Query: 919 SKQKDAKRGIEFS--IYEKSVIEVSRSRYANEVSKSKYFK 956
K ++ +F + ++ R R + + K+ K
Sbjct: 249 RKDFREEQISQFQHGLLQEDQTGRERKRKKGKKTSRKFKK 288
|
Length = 549 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 3e-05
Identities = 52/178 (29%), Positives = 77/178 (43%), Gaps = 34/178 (19%)
Query: 689 VILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLR 748
V+L + I + + LVG +G GKST+ AL+ K I+ DG + W
Sbjct: 15 VLLDNATATINPGQKVGLVGKNGCGKSTLLALL-------KNEISADGGSY-TFPGNW-- 64
Query: 749 TQIGMVGQEPILFATSILENVLMGKEN--------------------ATMKEAVAACKAA 788
Q+ V QE LE V+ G AT+ + A A
Sbjct: 65 -QLAWVNQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAW 123
Query: 789 SAHSFISEL--PLGY-DTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALD 843
+ S + L LG+ + Q+ + SGG + R+ LA+A+I +LLLDEPT+ LD
Sbjct: 124 TIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLD 181
|
Length = 638 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 47.8 bits (115), Expect = 4e-05
Identities = 50/192 (26%), Positives = 89/192 (46%), Gaps = 38/192 (19%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
IE + ++ ++ R ++ D + G +V ++G +G+GKST+ +I P+ G +
Sbjct: 325 IEAENLSKSFGDR---LLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTI 381
Query: 1374 MI-EGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKAS-WAEIEEAAEEAYI 1431
I E V L A V Q RD + +P + W EI + +
Sbjct: 382 KIGETVKL------------AYVDQS--------RDAL---DPNKTVWEEISGGLDIIKV 418
Query: 1432 HKF-ISSLPQGYETQVGESGV-------QLSGGQKQRIAIARAILKGSRVLLLDEASSAL 1483
I S + Y + G LSGG++ R+ +A+ + +G VLLLDE ++ L
Sbjct: 419 GNREIPS--RAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDL 476
Query: 1484 DLESEKHVQDAL 1495
D+E+ + +++AL
Sbjct: 477 DVETLRALEEAL 488
|
Length = 556 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 4e-05
Identities = 36/182 (19%), Positives = 65/182 (35%), Gaps = 47/182 (25%)
Query: 1342 GSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQEPAL 1401
+V + G SGSGKST++ N+G L L + +
Sbjct: 21 NVLVVVTGVSGSGKSTLV---------NEG--------LYASGKARLISFLPKFSRNKLI 63
Query: 1402 FAGTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRI 1461
F ++ I +G + L G + LSGG+ QR+
Sbjct: 64 FIDQLQFLIDVG---------------------LGYLTLGQKLST------LSGGELQRV 96
Query: 1462 AIARAILKGSR--VLLLDEASSALDLESEKHVQDALRK-VSKRATTIVVAHRLSTIREAN 1518
+A + + +LDE S+ L + + + ++ + T I++ H L + A+
Sbjct: 97 KLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSSAD 156
Query: 1519 MI 1520
I
Sbjct: 157 WI 158
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 4e-05
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 811 QLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISV-GRTTIVIAHR 869
QLSGG+ QR+A+A A+ +D DEP+S LD + + I +++ +V+ H
Sbjct: 139 QLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHD 198
Query: 870 LA 871
LA
Sbjct: 199 LA 200
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 4e-05
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 6/46 (13%)
Query: 804 QVGDRGT------QLSGGQKQRIALARAMIKDPRILLLDEPTSALD 843
QVG G QLS GQ++R+ALAR + + +LDEP +A+D
Sbjct: 116 QVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAID 161
|
Length = 204 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 5e-05
Identities = 67/275 (24%), Positives = 118/275 (42%), Gaps = 57/275 (20%)
Query: 1286 PAVLQITKRKPLIDNVKGRKLERSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMV 1345
L + L+D VK +L+ VTF+ P +VT + D ++ G +
Sbjct: 1 TVPLAQQQADALLD-VK------------DLR-VTFSTPD-GDVTAVNDLNFSLRAGETL 45
Query: 1346 ALVGGSGSGKSTVIWLIQRFYDPN---QGKVMIEG---VDLREINVKWLR-KQTALVGQE 1398
+VG SGSGKS + + N G G ++L E + LR +Q +++ Q+
Sbjct: 46 GIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQD 105
Query: 1399 PALFAGTIRDNIALGNP--KASWAEIEEAAEEAYIHKFISSLPQGYETQV---------- 1446
P +L NP + E+ E +HK +S + +E V
Sbjct: 106 PM---------TSL-NPYMRVG----EQLMEVLMLHKGMSK-AEAFEESVRMLDAVKMPE 150
Query: 1447 -----GESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKR 1501
+ SGG +QR+ IA A+L ++L+ DE ++ALD+ + + L ++ +
Sbjct: 151 ARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKRE 210
Query: 1502 ATT--IVVAHRLSTIRE-ANMIAVVRDGAVVEYGS 1533
T I++ H L + + + V+ G +EYG+
Sbjct: 211 FNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGN 245
|
Length = 330 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 5e-05
Identities = 52/227 (22%), Positives = 96/227 (42%), Gaps = 34/227 (14%)
Query: 690 ILRSLNLVIPSSKTLALVGTSGGGKSTVFALI----ERFYDPTKGLITLDGHDLKSLQVK 745
IL+ ++ +I + ++G G G ST+ I + F+ +G+IT DG + + K
Sbjct: 76 ILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEI-KK 134
Query: 746 WLRTQIGMVGQE----PILFATSILENVLMGKENATMKEAVA----ACKAASAHSFISEL 797
R + + P L L+ K + V+ A A + L
Sbjct: 135 HYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGL 194
Query: 798 PLGYDTQVGD---RGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAI 854
+T+VG+ RG +SGG+++R+++A A + +I D T LDS + A+
Sbjct: 195 SHTRNTKVGNDFVRG--VSGGERKRVSIAEASLGGAKIQCWDNATRGLDSAT------AL 246
Query: 855 DKISVGRTTIVIAHRLATV------KNA----NTIVVLDQGSVVEIG 891
+ I +T+ I V ++A + ++VL +G + G
Sbjct: 247 EFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFG 293
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 5e-05
Identities = 56/221 (25%), Positives = 102/221 (46%), Gaps = 36/221 (16%)
Query: 1316 LKM--VTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
LKM V+ Y R +L L + GS + L+G +G+GKST+I L+ P G++
Sbjct: 313 LKMEKVSAGYGDR---IILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEI 369
Query: 1374 -MIEGVDL---REINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEA 1429
+ +G+ L + +++LR A +P A + E
Sbjct: 370 GLAKGIKLGYFAQHQLEFLR---------------------ADESPLQHLARLAPQELEQ 408
Query: 1430 YIHKFISSLPQGYE-TQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESE 1488
+ ++ G++ +V E + SGG+K R+ +A + + +LLLDE ++ LDL+
Sbjct: 409 KLRDYLGGF--GFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMR 466
Query: 1489 KHVQDALRKVSKRATTIVVAHRLSTIRE-ANMIAVVRDGAV 1528
+ + +AL + +VV+H +R + + +V DG V
Sbjct: 467 QALTEAL--IDFEGALVVVSHDRHLLRSTTDDLYLVHDGKV 505
|
Length = 638 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 8e-05
Identities = 47/208 (22%), Positives = 89/208 (42%), Gaps = 28/208 (13%)
Query: 1312 LGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQG 1371
+ I + +T Y ++ L + + + G +V +G +G+GKST + +I + P+ G
Sbjct: 1 MSIRVSSLTKLYGTQ---NALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSG 57
Query: 1372 KVMIEGVDLREI------NVKWLRKQTALV----GQEPALFAGTIRDNIALGNPKASWAE 1421
V + G D+ + N+ +L + L +E F I +
Sbjct: 58 SVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEM 117
Query: 1422 IEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASS 1481
IE HK I L +GY +QR+ +A+A++ +VL+LDE ++
Sbjct: 118 IELVGLRPEQHKKIGQLSKGY---------------RQRVGLAQALIHDPKVLILDEPTT 162
Query: 1482 ALDLESEKHVQDALRKVSKRATTIVVAH 1509
LD +++ ++ + K T I+ H
Sbjct: 163 GLDPNQLVEIRNVIKNIGKDKTIILSTH 190
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 8e-05
Identities = 51/178 (28%), Positives = 85/178 (47%), Gaps = 26/178 (14%)
Query: 704 LALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIGMVGQE----PI 759
L+G +G GK+T F ++ T G T+ G K + T I V Q P
Sbjct: 1968 FGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAG--------KSILTNISDVHQNMGYCPQ 2019
Query: 760 LFATSILENVLMGKEN----ATMKEAVAACKAASAHSFISELPLGYDTQVGDR--GTQLS 813
A ++++L G+E+ A ++ A A+ I L L + DR GT S
Sbjct: 2020 FDA---IDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGL---SLYADRLAGT-YS 2072
Query: 814 GGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAI-DKISVGRTTIVIAHRL 870
GG K++++ A A+I P ++LLDEPT+ +D ++ ++ I I GR ++ +H +
Sbjct: 2073 GGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSM 2130
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 8e-05
Identities = 52/196 (26%), Positives = 87/196 (44%), Gaps = 50/196 (25%)
Query: 706 LVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIGMVGQEPILFAT-S 764
L+G +G GKST ++ +P+ G ++LD ++ ++G + Q+ F +
Sbjct: 32 LIGANGCGKSTFMKILGGDLEPSAGNVSLDPNE-----------RLGKLRQDQFAFEEFT 80
Query: 765 ILENVLMGKE--------------NATMKE----AVAACKAA-------SAHSFISELPL 799
+L+ V+MG M E VA + +A + EL L
Sbjct: 81 VLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLL 140
Query: 800 GYDTQVGDRGTQLSG-------GQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQ 852
G VG Q G G K R+ LA+A+ +P ILLLDEPT+ LD + ++
Sbjct: 141 G----VGIPEEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLED 196
Query: 853 AIDKISVGRTTIVIAH 868
+++ + T I+I+H
Sbjct: 197 VLNERNS--TMIIISH 210
|
Length = 530 |
| >gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 9e-05
Identities = 24/91 (26%), Positives = 53/91 (58%), Gaps = 3/91 (3%)
Query: 811 QLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISV--GRTTIVIAH 868
+L+ G+ Q++ +A A+ PR+L+ DEPT++++ +++ + + + +++ T ++I+H
Sbjct: 158 ELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISH 217
Query: 869 RLATVKN-ANTIVVLDQGSVVEIGNHRQLLE 898
L + A+ I VL G VE +L+
Sbjct: 218 DLQMISQWADKINVLYCGQTVESAPSEELVT 248
|
Length = 330 |
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 9e-05
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 9/68 (13%)
Query: 810 TQLSGGQKQ------RIALARAMIKDPRI--LLLDEPTSALDSESESIVQQAIDKI-SVG 860
LSGG++ R+AL+ + R+ L LDEP LD E + + ++++ S G
Sbjct: 814 KTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDG 873
Query: 861 RTTIVIAH 868
R I+I+H
Sbjct: 874 RQIIIISH 881
|
Length = 908 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 1e-04
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
IE + ++ Y + +L+ ++L I + LVG +G GKST+ LI +P +G++
Sbjct: 1 IELENLSKTYGGKL---LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIV 57
Query: 733 TLD 735
T
Sbjct: 58 TWG 60
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 1e-04
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 1452 QLSGGQKQRIAIAR--AIL--KGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVV 1507
LSGG+K A+A AI + + +LDE +ALD + + V ++++SK IV+
Sbjct: 1066 LLSGGEKSLTALALLFAIQKYRPAPFYVLDEVDAALDDANVERVARLIKEMSKETQFIVI 1125
Query: 1508 AHRLSTIREANMIAVV 1523
HR T+ A+ + V
Sbjct: 1126 THRKGTMEAADRLVGV 1141
|
Length = 1163 |
| >gnl|CDD|234734 PRK00349, uvrA, excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Score = 46.2 bits (111), Expect = 1e-04
Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 11/89 (12%)
Query: 799 LGYDTQVGDRGTQLSGGQKQRIALARAMIKDP--RIL-LLDEPTSALDSESES----IVQ 851
LGY ++G T LSGG+ QR+ LA+ + K + L +LDEPT+ L E ++
Sbjct: 819 LGY-IKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLH 877
Query: 852 QAIDKISVGRTTIVIAHRLATVKNANTIV 880
+ +DK G T +VI H L +K A+ I+
Sbjct: 878 RLVDK---GNTVVVIEHNLDVIKTADWII 903
|
Length = 943 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 2e-04
Identities = 50/207 (24%), Positives = 93/207 (44%), Gaps = 19/207 (9%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQ--G 1371
+E + +T P + D ++ G ++ + G G+G++ ++ + Y P + G
Sbjct: 258 LEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAY-PGKFEG 316
Query: 1372 KVMIEG--VDLREINVKWLRKQTALVGQE-------PALFAGTIRDNIALG--NPKASWA 1420
V I G VD+R + +R A+V ++ P L G NI L
Sbjct: 317 NVFINGKPVDIRNP-AQAIRAGIAMVPEDRKRHGIVPILGVG---KNITLSVLKSFCFKM 372
Query: 1421 EIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEAS 1480
I+ AAE I I L + G +LSGG +Q+ +A+ +L RVL+LDE +
Sbjct: 373 RIDAAAELQIIGSAIQRLKVKTASPFLPIG-RLSGGNQQKAVLAKMLLTNPRVLILDEPT 431
Query: 1481 SALDLESEKHVQDALRKVSKRATTIVV 1507
+D+ ++ + + ++++ I+V
Sbjct: 432 RGVDVGAKYEIYKLINQLAQEGVAIIV 458
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 2e-04
Identities = 34/118 (28%), Positives = 60/118 (50%), Gaps = 17/118 (14%)
Query: 812 LSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLA 871
LSGG++ R+ LAR +K +L+LDEPT+ LD E+ ++++ +D S T ++++H
Sbjct: 441 LSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLD--SYQGTVLLVSHDRQ 498
Query: 872 TVKNANTIVVLDQGSVVEI----GNHRQLLERGGAYHDLVKLASEAVSQPQSKQKDAK 925
V N +V E GN ++ G YHD + ++ ++ Q K +
Sbjct: 499 FVDN----------TVTECWIFEGNG-KIGRYVGGYHDARQQQAQYLALKQPAVKKKE 545
|
Length = 635 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 2e-04
Identities = 53/186 (28%), Positives = 85/186 (45%), Gaps = 28/186 (15%)
Query: 687 ETVILRS--LNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQV 744
+ +IL S LNLV P S+ + L+G +G GKST+ L+ P G I L K +++
Sbjct: 324 DRIILDSIKLNLV-PGSR-IGLLGRNGAGKSTLIKLLAGELAPVSGEIGLA----KGIKL 377
Query: 745 KWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAA--SAHSFISELPLGYD 802
+ FA LE L E+ A A + ++ D
Sbjct: 378 GY--------------FAQHQLE-FLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGD 422
Query: 803 TQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRT 862
+V + + SGG+K R+ LA + + P +LLLDEPT+ LD + + +A+ I
Sbjct: 423 -KVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEAL--IDFEGA 479
Query: 863 TIVIAH 868
+V++H
Sbjct: 480 LVVVSH 485
|
Length = 638 |
| >gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 3e-04
Identities = 44/115 (38%), Positives = 53/115 (46%), Gaps = 27/115 (23%)
Query: 1453 LSGGQKQRIAIARAILKGSR---VL-LLDEASSALDLESEKHVQDALR--KVSKRA---- 1502
LSGG+ QRI +A I GS VL +LDE S L H +D R KR
Sbjct: 489 LSGGEAQRIRLATQI--GSGLTGVLYVLDEPSIGL------HQRDNRRLINTLKRLRDLG 540
Query: 1503 -TTIVVAHRLSTIREANMI------AVVRDGAVVEYGSHETLLASH--LNGVYAS 1548
T IVV H TIR A+ + A G VV G+ E +LA+ L G Y S
Sbjct: 541 NTLIVVEHDEDTIRAADYVIDIGPGAGEHGGEVVASGTPEEILANPDSLTGQYLS 595
|
This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 925 |
| >gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 3e-04
Identities = 44/115 (38%), Positives = 55/115 (47%), Gaps = 27/115 (23%)
Query: 1453 LSGGQKQRIAIARAILKGSR---VL-LLDEASSAL---D----LESEKHVQDALRKVSKR 1501
LSGG+ QRI +A I GS VL +LDE S L D +E+ K ++D
Sbjct: 482 LSGGEAQRIRLATQI--GSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRD------LG 533
Query: 1502 ATTIVVAHRLSTIREANMI------AVVRDGAVVEYGSHETLLAS--HLNGVYAS 1548
T IVV H TIR A+ I A G +V G+ E LLA+ L G Y S
Sbjct: 534 NTVIVVEHDEDTIRAADHIIDIGPGAGEHGGEIVAEGTPEELLANPESLTGQYLS 588
|
Length = 935 |
| >gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 3e-04
Identities = 25/90 (27%), Positives = 55/90 (61%), Gaps = 3/90 (3%)
Query: 811 QLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISV--GRTTIVIAH 868
+L+ G+ Q++ +A A+ PR+L+ DEPT+A++ +++ + + + +++ T ++I+H
Sbjct: 158 ELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISH 217
Query: 869 RLATV-KNANTIVVLDQGSVVEIGNHRQLL 897
L + + A+ I VL G VE ++L+
Sbjct: 218 DLQMLSQWADKINVLYCGQTVETAPSKELV 247
|
Length = 330 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 4e-04
Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 7/110 (6%)
Query: 812 LSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKIS-VGRTTIVIAHRL 870
LSGG +Q+ L R + +D +++LLDEPT +D ++ + I +++ G + ++ L
Sbjct: 397 LSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDL 456
Query: 871 ATVKN-ANTIVVLDQGSVVEIGNHRQLLERGGAYHDLVKLASEAVSQPQS 919
V A+ IVV+ +G + Q E + LA S +
Sbjct: 457 PEVLGVADRIVVMREGRIAGELAREQATE-----RQALSLALPRTSAAVA 501
|
Length = 501 |
| >gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 4e-04
Identities = 41/184 (22%), Positives = 80/184 (43%), Gaps = 17/184 (9%)
Query: 698 IPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIGMVGQE 757
+PS+ T + G +G GKS++ +I P+ G I ++ ++ + T IG
Sbjct: 24 LPSAITY-IKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYC-TYIGH--NL 79
Query: 758 PILFATSILENVLMGKENATMKEAV-AACKAASAHSFISELPLGYDTQVGDRGTQLSGGQ 816
+ ++ EN+ E E + AA H + E + LS G
Sbjct: 80 GLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDE-----------KCYSLSSGM 128
Query: 817 KQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAID-KISVGRTTIVIAHRLATVKN 875
++ +A+AR + + LLDE + L E+ ++ I K + G ++ +H +++K+
Sbjct: 129 QKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKS 188
Query: 876 ANTI 879
A +
Sbjct: 189 AQIL 192
|
Length = 195 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 6e-04
Identities = 43/187 (22%), Positives = 79/187 (42%), Gaps = 36/187 (19%)
Query: 692 RSLNLVIPSSKTLALVGTSGGGKSTVFALIERFY---DPTKGLITLDGHDLKSLQVK--- 745
R+++L + + + L L G G G+ T A E Y G I L+G ++ +L
Sbjct: 280 RNISLEVRAGEILGLAGVVGAGR-TELA--ETLYGLRPARGGRIMLNGKEINALSTAQRL 336
Query: 746 -----WL---RTQIGMVGQEPILFATSILENVLMG------KENATMKEAVAACKAASAH 791
+L R G+ P+ + L + G +ENA ++ A H
Sbjct: 337 ARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNH 396
Query: 792 SFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQ 851
+ + LSGG +Q++ +A+ + P++L++DEPT +D + + +
Sbjct: 397 A---------EQAAR----TLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIY 443
Query: 852 QAIDKIS 858
Q I I+
Sbjct: 444 QLIRSIA 450
|
Length = 510 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 7e-04
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 1422 IEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASS 1481
I+ EA ++ L E QV + SGG + RIA+ARA+ +LLLDE ++
Sbjct: 315 IDAYTAEARAASILAGLSFTPEMQVKATK-TFSGGWRMRIALARALFIEPDLLLLDEPTN 373
Query: 1482 ALDLESEKHVQDALRKVSKRATTIVVAH 1509
LDL + ++ L K K T IVV+H
Sbjct: 374 HLDLHAVLWLETYLLKWPK--TFIVVSH 399
|
Length = 718 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 8e-04
Identities = 38/198 (19%), Positives = 61/198 (30%), Gaps = 61/198 (30%)
Query: 1342 GSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQEPAL 1401
GS+ + G +GSGKST++ L
Sbjct: 21 GSLTIITGPNGSGKSTIL------------------------------DAIGLA------ 44
Query: 1402 FAGTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRI 1461
A A AA A + +QLSGG+K+
Sbjct: 45 ---LGGAQSATRRRSGVKAGCIVAAVSAELIFTR---------------LQLSGGEKELS 86
Query: 1462 AIARAI----LKGSRVLLLDEASSALDLESEKHVQDALRKVS-KRATTIVVAHRLSTIRE 1516
A+A + LK + +LDE LD + + +A+ + K A IV+ H
Sbjct: 87 ALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAEL 146
Query: 1517 ANMIAVVRDGAVVEYGSH 1534
A+ ++ V+
Sbjct: 147 AD--KLIHIKKVITGVYK 162
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 8e-04
Identities = 58/211 (27%), Positives = 92/211 (43%), Gaps = 23/211 (10%)
Query: 1332 LKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEG-VDLREINVKWLRK 1390
L D LK G ++ LVG +GSGKST+ +I P GKV G V + I+ +
Sbjct: 40 LDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQ 99
Query: 1391 QTALVGQE-PALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGES 1449
T + E L G R I KA +I E +E + +FI + Y
Sbjct: 100 LTGIENIEFKMLCMGFKRKEI-----KAMTPKIIEFSE---LGEFIYQPVKKY------- 144
Query: 1450 GVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTI-VVA 1508
S G + ++ + I +L++DEA S D + D + + ++ TI V+
Sbjct: 145 ----SSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVS 200
Query: 1509 HRLSTIRE-ANMIAVVRDGAVVEYGSHETLL 1538
H L +R+ IA + G + +YG + +L
Sbjct: 201 HNLGQVRQFCTKIAWIEGGKLKDYGELDDVL 231
|
Length = 264 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 0.001
Identities = 18/83 (21%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 810 TQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKIS-VGRTTIVIAH 868
T+LSGG +Q++ +++ + P +++ DEPT +D +++ + + + +++ G+ ++++
Sbjct: 408 TELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSS 467
Query: 869 RLATVKNA-NTIVVLDQGSVVEI 890
L + + I V +G + +I
Sbjct: 468 ELPEIITVCDRIAVFCEGRLTQI 490
|
Length = 510 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 0.001
Identities = 46/190 (24%), Positives = 84/190 (44%), Gaps = 33/190 (17%)
Query: 1315 ELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKS-TVIWLIQRFYDPNQGKV 1373
E++ +T P P + + D ++ G ++ + G G+G++ V L + +G++
Sbjct: 261 EVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEI 320
Query: 1374 MIEG--VDLREIN---------VKWLRKQTALVGQEPALFAGTIRDNIALGNPK--ASWA 1420
I+G V +R V RK+ +V P + G NI L +
Sbjct: 321 FIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIV---PVMGVG---KNITLAALDRFTGGS 374
Query: 1421 EIEEAAEEAYIHKFISSL------PQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVL 1474
I++AAE I + I L P E + +LSGG +Q+ +A+ +L ++L
Sbjct: 375 RIDDAAELKTILESIQRLKVKTASP---ELAIA----RLSGGNQQKAVLAKCLLLNPKIL 427
Query: 1475 LLDEASSALD 1484
+LDE + +D
Sbjct: 428 ILDEPTRGID 437
|
Length = 506 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 0.001
Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 4/44 (9%)
Query: 800 GYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALD 843
G+ TQ+G LSGG +Q++ + R ++ P IL+LDEPT +D
Sbjct: 384 GHRTQIG----SLSGGNQQKVIIGRWLLTQPEILMLDEPTRGID 423
|
Length = 491 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 0.001
Identities = 18/45 (40%), Positives = 33/45 (73%)
Query: 812 LSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDK 856
LSGG +Q++A+AR ++ P++L+LDEPT +D ++ + Q I++
Sbjct: 396 LSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQ 440
|
Length = 501 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.001
Identities = 43/171 (25%), Positives = 73/171 (42%), Gaps = 41/171 (23%)
Query: 1339 VKGGSMVALVGGSGSGKSTVI-WLIQRFYDPN-QGKVMIEGVDLREINVKWLRKQTALVG 1396
VK G++ AL+G SG+GK+T++ L R G+++I G L K ++ T V
Sbjct: 30 VKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQRSTGYVE 85
Query: 1397 QEPALFAG-TIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSG 1455
Q+ T+R EA S+L +G LS
Sbjct: 86 QQDVHSPNLTVR----------------EALR-------FSALLRG-----------LSV 111
Query: 1456 GQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIV 1506
Q++R+ I + +L LDE +S LD ++ ++ L+K++ I+
Sbjct: 112 EQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAIL 162
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|213245 cd03278, ABC_SMC_barmotin, ATP-binding cassette domain of barmotin, a member of the SMC protein family | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 0.001
Identities = 56/193 (29%), Positives = 88/193 (45%), Gaps = 43/193 (22%)
Query: 1342 GSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLR--KQTALVGQEP 1399
+ A+VG +GSGKS +I I R+ V+ G E + K LR K + ++
Sbjct: 22 PGLTAIVGPNGSGKSNIIDAI-RW-------VL--G----EQSAKSLRGEKMSDVI---- 63
Query: 1400 ALFAGTIRDNIALGNPKASWAEIE-EAAEEAYIHKFISSLPQGYETQVGESG---VQ--- 1452
FAG+ A++AE+ + IS QG +++ E+ VQ
Sbjct: 64 --FAGS------ETRKPANFAEVTLTFDNSDGRYSIIS---QGDVSEIIEAPGKKVQRLS 112
Query: 1453 -LSGGQKQRIAIAR--AIL--KGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVV 1507
LSGG+K A+A AI + S +LDE +ALD + + L++ SK IV+
Sbjct: 113 LLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSKETQFIVI 172
Query: 1508 AHRLSTIREANMI 1520
HR T+ A+ +
Sbjct: 173 THRKGTMEAADRL 185
|
Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (formerly known as Rad18). Length = 197 |
| >gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50 | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.001
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 11/68 (16%)
Query: 811 QLSGGQKQ------RIALARAMIKDPRILLLDEPTSALDSES--ESIVQQAIDKIS--VG 860
+ SGG+K R+ALA + IL LDEPT+ LD E+ ES+ + I++
Sbjct: 115 RCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLA-EIIEERKSQKN 173
Query: 861 RTTIVIAH 868
IVI H
Sbjct: 174 FQLIVITH 181
|
The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. Length = 204 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 42.0 bits (100), Expect = 0.002
Identities = 30/81 (37%), Positives = 47/81 (58%), Gaps = 14/81 (17%)
Query: 800 GYDTQ--VGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKI 857
G D Q VG LSGG++ R+ LA+ + + +LLLDEPT+ LD E+ +++A+ +
Sbjct: 436 GGDQQKKVG----VLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEF 491
Query: 858 SVGRTTIVIAH------RLAT 872
G +VI+H R+AT
Sbjct: 492 P-G-CAVVISHDRWFLDRIAT 510
|
Length = 556 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 0.002
Identities = 65/254 (25%), Positives = 110/254 (43%), Gaps = 68/254 (26%)
Query: 1345 VALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQEPAL-FA 1403
V LVG +G+GKST++ ++ + G+++ E ++ R Q Q+P
Sbjct: 32 VCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQ------DLIVARLQ-----QDPPRNVE 80
Query: 1404 GTIRDNIALGNPKASWAEIEEAAE--EAYIH-----------KFISSLPQ---------- 1440
GT+ D +A G IEE AE + Y K ++ L +
Sbjct: 81 GTVYDFVAEG--------IEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNL 132
Query: 1441 -GYETQVGESGVQ-----------LSGGQKQRIAIARAILKGSRVLLLDEASSALDLESE 1488
E ++ E Q LSGG ++ A+ RA++ VLLLDE ++ LD+E+
Sbjct: 133 WQLENRINEVLAQLGLDPDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETI 192
Query: 1489 KHVQDALRKVSKRATTIVVAHRLSTIREANMIAVVRD---GAVVEY-GSHETLLASHLNG 1544
+ ++ L+ + + + I ++H S IR NM + D G +V Y G+++ L
Sbjct: 193 EWLEGFLK--TFQGSIIFISHDRSFIR--NMATRIVDLDRGKLVSYPGNYDQYLLEK--- 245
Query: 1545 VYASLVRAETEANA 1558
+R E NA
Sbjct: 246 --EEALRVEELQNA 257
|
Length = 635 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.002
Identities = 53/224 (23%), Positives = 104/224 (46%), Gaps = 27/224 (12%)
Query: 1330 TVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLI--QRFYDPNQGKVMIEGVDLREINVKW 1387
+L+ L+V+ G + A++G +GSGKST+ + + Y+ G V +G DL E++ +
Sbjct: 15 AILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPED 74
Query: 1388 LRKQTALVG-QEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHKF-----------I 1435
+ + Q P G + + L + + + + + +F +
Sbjct: 75 RAGEGIFMAFQYPVEIPG-VSNQFFL---QTALNAVRSYRGQEPLDRFDFQDLMEEKIAL 130
Query: 1436 SSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQ--- 1492
+P+ T+ V SGG+K+R I + + + +LDE+ S LD+++ K V
Sbjct: 131 LKMPEDLLTR--SVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGV 188
Query: 1493 DALRKVSKRATTIVVAH--RLSTIREANMIAVVRDGAVVEYGSH 1534
++LR KR+ I+V H R+ + + + V+ G +V+ G
Sbjct: 189 NSLRD-GKRS-FIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDF 230
|
Length = 248 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.002
Identities = 45/169 (26%), Positives = 72/169 (42%), Gaps = 24/169 (14%)
Query: 1325 SRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREIN 1384
SR E V V G + + G +G+GK+T++ ++ G++ I+G +
Sbjct: 20 SRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGD 79
Query: 1385 VKWLRKQTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIH-KFISSLPQGYE 1443
+ A +G P L KA + +E +H + +P
Sbjct: 80 RS---RFMAYLGHLPGL--------------KADLSTLENLHFLCGLHGRRAKQMPGSAL 122
Query: 1444 TQVGESGV------QLSGGQKQRIAIARAILKGSRVLLLDEASSALDLE 1486
VG +G QLS GQK+R+A+AR L + + LLDE + LDLE
Sbjct: 123 AIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLE 171
|
Length = 214 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 0.002
Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 5/109 (4%)
Query: 1452 QLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIV-VAHR 1510
LS G+ ++ + +A++ +L+LDE LD+ S + + + L + + T+V V +R
Sbjct: 135 YLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNR 194
Query: 1511 LSTIRE-ANMIAVVRDGAVVEYGSHETLLASHLNGVYASLVRAETEANA 1558
I + V+ D + E G E +L L A L +E
Sbjct: 195 FDEIPDFVQFAGVLADCTLAETGEREEILQQAL---VAQLAHSEQLEGV 240
|
Length = 490 |
| >gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.002
Identities = 53/234 (22%), Positives = 99/234 (42%), Gaps = 33/234 (14%)
Query: 704 LALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIGMVGQEPILFAT 763
+ LVG +G GKST+ +I PT G + +G +V + G+ GQ
Sbjct: 53 IGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNG------EVSVIAISAGLSGQ------- 99
Query: 764 SILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQ----LSGGQKQR 819
L G EN K K + ++ + + +++G+ Q S G + +
Sbjct: 100 ------LTGIENIEFKMLCMGFKRKEIKAMTPKI-IEF-SELGEFIYQPVKKYSSGMRAK 151
Query: 820 IALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKI----SVGRTTIVIAHRLATVKN 875
+ + + +P IL++DE S D ++ Q+ +DKI +T ++H L V+
Sbjct: 152 LGFSINITVNPDILVIDEALSVGD---QTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQ 208
Query: 876 ANT-IVVLDQGSVVEIGNHRQLLERGGAYHDLVKLASEAVSQPQSKQKDAKRGI 928
T I ++ G + + G +L + A+ + K S+A + + D R +
Sbjct: 209 FCTKIAWIEGGKLKDYGELDDVLPKYEAFLNDFKKKSKAEQKEFRNKLDESRFV 262
|
Length = 264 |
| >gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 0.002
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 10/90 (11%)
Query: 797 LPLGYDTQVGDRGTQLSGGQKQRIALARAMI---KDPRILLLDEPTSALDSES-ESIVQQ 852
LPLG + LSGG+ QR+ LA ++ K P + +LDEPT+ L + ++++
Sbjct: 801 LPLGRPL------SSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYV 854
Query: 853 AIDKISVGRTTIVIAHRLATVKNANTIVVL 882
G T ++I H + VK A+ ++ L
Sbjct: 855 LQSLTHQGHTVVIIEHNMHVVKVADYVLEL 884
|
Length = 1809 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.003
Identities = 40/214 (18%), Positives = 91/214 (42%), Gaps = 20/214 (9%)
Query: 1333 KDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREIN-VKWLRKQ 1391
+D V G ++ G GSG++ ++ + G++ + G D+ + + ++K
Sbjct: 280 RDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKG 339
Query: 1392 TALVGQ---EPALFAG-TIRDNIA------LGNPKASWAEIEEAAEEAYIH---KFISSL 1438
A + + + F +I N+A G K + E E+ + ++
Sbjct: 340 MAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALK 399
Query: 1439 PQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKV 1498
+ E LSGG +Q++ I++ + V++ DE + +D+ ++ + +R++
Sbjct: 400 CHSVNQNITE----LSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQL 455
Query: 1499 SKRATTI-VVAHRLSTIREA-NMIAVVRDGAVVE 1530
+ I +V+ L I + IAV +G + +
Sbjct: 456 ADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQ 489
|
Length = 510 |
| >gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 0.003
Identities = 35/110 (31%), Positives = 57/110 (51%), Gaps = 12/110 (10%)
Query: 1422 IEEAAE----EAYIHKFISSLPQ---GYETQVGESGVQLSGGQKQRIAIARAILK---GS 1471
+EEA E I + + +L GY ++G+ LSGG+ QR+ +A+ + K G
Sbjct: 786 VEEALEFFEAIPKIARKLQTLVDVGLGY-IKLGQPATTLSGGEAQRVKLAKELSKRSTGK 844
Query: 1472 RVLLLDEASSALDLESEKHVQDAL-RKVSKRATTIVVAHRLSTIREANMI 1520
+ +LDE ++ L + K + + L R V K T IV+ H L I+ A+ I
Sbjct: 845 TLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVIKTADWI 894
|
Length = 935 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.003
Identities = 54/207 (26%), Positives = 86/207 (41%), Gaps = 41/207 (19%)
Query: 1316 LKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPN---QGK 1372
L M+ + ++T+LKD +K M L+G SGK+T++ + DP+ G+
Sbjct: 165 LGMLGINLAKKTKLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGE 224
Query: 1373 VMIEGVDLREINVKWLRKQTALVGQ-----------EPALFA------GTIRDNIALGNP 1415
+ G L E RK +A + Q E F+ GT D ++
Sbjct: 225 ITYNGYRLNEFVP---RKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELAR 281
Query: 1416 KASWAEIEEAAEEAYIHKFI------SSLPQGY-----------ETQVGESGVQ-LSGGQ 1457
+ A I AE K SSL Y +T VG+ ++ +SGGQ
Sbjct: 282 REKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQ 341
Query: 1458 KQRIAIARAILKGSRVLLLDEASSALD 1484
K+R+ I+ ++ L +DE S+ LD
Sbjct: 342 KKRVTTGEMIVGPTKTLFMDEISTGLD 368
|
Length = 1470 |
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 0.003
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Query: 1452 QLSGGQKQRIAIA--RAILKGSRV--LLLDEASSALDLESEKHVQDALRKVSKRATTIVV 1507
LSGG+K +A+A AI K LLDE +ALD ++ V + L+++SK A IV+
Sbjct: 1078 NLSGGEKTLVALALIFAIQKYRPAPFYLLDEIDAALDDQNVSRVANYLKELSKNAQFIVI 1137
Query: 1508 AHRLSTIREANMI 1520
+ R + +A+ +
Sbjct: 1138 SLREEMLEKADRL 1150
|
This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 0.004
Identities = 41/176 (23%), Positives = 73/176 (41%), Gaps = 40/176 (22%)
Query: 1325 SRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREI- 1383
R E + + G +V + G +G+GK++++ ++ P+ G+V+ +G +R
Sbjct: 10 ERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR 69
Query: 1384 -----NVKWLRKQTA----LVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHKF 1434
++ +L Q L E F + +EA EA
Sbjct: 70 DEYHQDLLYLGHQPGIKTELTALENLRFYQRLHGPGD-----------DEALWEAL---- 114
Query: 1435 ISSLPQGYETQVGESGV------QLSGGQKQRIAIARAILKGSRVLLLDEASSALD 1484
QVG +G QLS GQ++R+A+AR L + + +LDE +A+D
Sbjct: 115 ---------AQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAID 161
|
Length = 204 |
| >gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.004
Identities = 28/92 (30%), Positives = 50/92 (54%), Gaps = 5/92 (5%)
Query: 799 LGYDTQVGDRGTQLSGGQKQRIALARAMI---KDPRILLLDEPTSALDSESESIVQQAID 855
LGY +G + LS +K I +A+ + K P + LLDE ++LD++ +S + +
Sbjct: 1688 LGY-LPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLR 1746
Query: 856 K-ISVGRTTIVIAHRLATVKNANTIVVLDQGS 886
+S+G + I I H A +K A+ ++ + GS
Sbjct: 1747 TLVSLGHSVIYIDHDPALLKQADYLIEMGPGS 1778
|
Length = 1809 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1560 | |||
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 |
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-198 Score=1866.67 Aligned_cols=1211 Identities=45% Similarity=0.777 Sum_probs=1104.9
Q ss_pred cccHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHHHHHHH
Q 000406 329 PVGLFSLFKYSTKLDMILVLLGCIGALINGGALPWYSYFFGNFVNKIANESSDPDKTQMMKDAEKICLLMTVLAAIVMMG 408 (1560)
Q Consensus 329 ~~~~~~l~~y~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 408 (1560)
.+++..+++|..+.++.+++++.+++++.++.+|++.++++++.+.+..... . .....+..+++.++.++++.++.
T Consensus 12 ~~~~~~lf~~a~~~D~~Lm~~G~i~a~~~G~~~P~~~ii~g~~~~~~~~~~~---~-~~~~~~~~~~l~~~~lg~~~~~~ 87 (1228)
T KOG0055|consen 12 TVSFFKLFRFADRFDYLLMILGSIGAIAHGLGLPLMSIIFGKLTDVLGDNTN---K-IASSEVSKVALYFVYLGVGVFIS 87 (1228)
T ss_pred ccchHHheeccchhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhccc---h-hhHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999999999999999886542 1 22256677899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 409 AYLEITCWRLVGERSAQRIRTKYLRAVLRQDIAFFDTEVSTSDIMHGISSDIAQIQEVMGEKVAHFAHNIFTFICGYTVG 488 (1560)
Q Consensus 409 ~~l~~~~~~~~~~~~~~~lr~~l~~~ll~~~l~ffd~~~~~G~i~~r~s~Dv~~i~~~l~~~l~~~i~~i~~~i~~~ii~ 488 (1560)
.+++..||.+.++|...++|..++++++|+++.|||.+ .+|++.+++++|++.|++.+++.+..+++.+.++++++++.
T Consensus 88 ~~~q~~c~~~~geRq~~riR~~yl~~iLrQdi~~fD~~-~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~ii~ 166 (1228)
T KOG0055|consen 88 GFIQVSCWMRTGERQTARIRSKYLKAILRQDIGWFDTN-STGELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIG 166 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccceeecc-cccceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987 56999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHhHhHH
Q 000406 489 FLRSWKVSLVVLSVTPLMMFCGMAYKAVYVGLTSKEEASYRRAGSVAEQAISSIRTVFSFVAEDHFAVRYAGLLADSIPF 568 (1560)
Q Consensus 489 ~~~s~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIka~~~e~~~~~~~~~~~~~~~~~ 568 (1560)
|+..|+++++++.+.|++.+....+.+.+.+...+.+..++++.+++.|++.++|||.+|+.|+...++|.+.++...+.
T Consensus 167 F~~~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k~ 246 (1228)
T KOG0055|consen 167 FYYGWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALKF 246 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 569 GAKLGFAKGAGMGVIYLVTYATWALAFWYGSILVARKELSGGAAIACFFGVNVGGRGLALSLSYFAQFAQGTVAATRVFE 648 (1560)
Q Consensus 569 ~~k~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~ls~g~~~~~l~~~~~~~~~l~~~~~~~~~~~~a~~a~~Ri~~ 648 (1560)
+.+...+.++..++..++.++.+++.+|||..++..+..++|.+++++++++..+..|++..+.+..+.++.+|+.+|++
T Consensus 247 gi~~g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~ 326 (1228)
T KOG0055|consen 247 GIKKGLFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFE 326 (1228)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHccCCCCCCCCCCCCcCCCCcccEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCC
Q 000406 649 IIDRVPEIDPYNSEGRKLSSVSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPT 728 (1560)
Q Consensus 649 ~l~~~~~~~~~~~~~~~~~~~~g~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~ 728 (1560)
.+++.|+.++....+......+|.|+|+||+|+||++++.++|+|+||+|++|+++||||+|||||||++++|.|+|+|+
T Consensus 327 ~i~~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~ 406 (1228)
T KOG0055|consen 327 TIDRKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPT 406 (1228)
T ss_pred HhcCCCCCCcccccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 99998887765533334445789999999999999999889999999999999999999999999999999999999999
Q ss_pred ccEEEECCeecCCccHHHHhccEEEEecCCcCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCC
Q 000406 729 KGLITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDR 808 (1560)
Q Consensus 729 ~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Tv~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~ 808 (1560)
+|+|++||.|+++++.+++|++||+|.|+|.||++||+|||.||.|+++.+++.++|+++++++||..+|+|++|.+|++
T Consensus 407 ~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~ 486 (1228)
T KOG0055|consen 407 SGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGER 486 (1228)
T ss_pred CceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCccccccCCEEEEEeCCeEE
Q 000406 809 GTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVV 888 (1560)
Q Consensus 809 g~~LSgGQrQRialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~D~i~vl~~G~iv 888 (1560)
|.+|||||||||||||||+++|+||||||||||||+++|+.|+++|++..+|+|.|+|+|||+++++||+|+||++|+|+
T Consensus 487 g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~Iv 566 (1228)
T KOG0055|consen 487 GVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIV 566 (1228)
T ss_pred CCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecChhhHhhhcchHHHHHHHHHhhccCcc-ccchhcccccchhhhhhhHHHhhhhhhhhhhhhhhhhhhhHHHhhhhHh
Q 000406 889 EIGNHRQLLERGGAYHDLVKLASEAVSQPQ-SKQKDAKRGIEFSIYEKSVIEVSRSRYANEVSKSKYFKSMQAEIQTVEE 967 (1560)
Q Consensus 889 ~~G~~~~l~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 967 (1560)
|.|+|+||++..|.|.++++.+........ ..+++... ....+. ..+. . ..................+.++
T Consensus 567 E~G~h~ELi~~~G~Y~~lv~~Q~~~~~~~~~~~~~~~~~-----~~~~s~-~~s~-~-~~~~~~~~~~~~~~~~~~~~e~ 638 (1228)
T KOG0055|consen 567 EQGTHDELIALGGIYSSLVRLQELEKAAEDEEEEESLKE-----ERSRSL-KSSS-S-SPSLSRGSNRSNLLSVKPEGED 638 (1228)
T ss_pred EecCHHHHHhccchHHHHHHHHhhhhhhhccccccchhh-----hhhhcc-cccc-c-cccccCCccccccccccccccc
Confidence 999999999999999999998754432111 00000000 000000 0000 0 0000000000000000000000
Q ss_pred hh--hCCCCchhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Q 000406 968 EQ--QKPRPRKFQLSEIWKLQRPEFAMIIFGFILGMHAGAILSIFPLILGQALQVYFDDTASTLRRDVRYLSLALVGLGF 1045 (1560)
Q Consensus 968 ~~--~~~~~~~~~~~~l~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 1045 (1560)
.. .........+.+++++.++.++.++++.+.+++.++..+++.++++.++..+..............|.++++++++
T Consensus 639 ~~~~~~~~~~~~s~~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~~l~~ 718 (1228)
T KOG0055|consen 639 PEEPVSEEDEKVSFWRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALIFLGLGI 718 (1228)
T ss_pred cccccccccccccHHHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHH
Confidence 00 0111145568899999999999999999999999999999999999999999865544455555569999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccCChHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 1046 GCIIFMTGQQGFCGWAGTKLTMRVRELLFRSILKQEPGWFDFEENSTGVLVSRLSIDSISFRSVLGDRFSVLLMGLSSAA 1125 (1560)
Q Consensus 1046 ~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~ll~~~~~ffd~~~~~~G~il~R~s~Di~~i~~~l~~~l~~~l~~~~~~i 1125 (1560)
...++.+++.+++.++++++..++|..+|+++++++++|||.++|. |.|.+|+.+|...++..+...+..++.++.+++
T Consensus 719 ~~~i~~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~ns-g~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~ 797 (1228)
T KOG0055|consen 719 VSGITNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENS-GALSSRLATDASNVRAAVGDRLSLVVQNIAAVI 797 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccc-hHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhh-hhhHHHHHHHHHHHhcchhHHHhccchHHHHHHHHHHH
Q 000406 1126 VGLGVSLVLNWRLTLVAAALTPFTLGASYLSLIINVGPKID-NSSYAKASSIASGAVSNIRTVTTFSAQEQIINSFDKAL 1204 (1560)
Q Consensus 1126 ~~l~~~~~~~~~l~lv~l~~ipl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~l~gi~tIraf~~e~~~~~~~~~~~ 1204 (1560)
+++++.|+++|+++++++++.|++++..+...+.......+ ...+.++...+.|++++++||++|++|+++.+.|.+.+
T Consensus 798 ~~iiiaf~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l 877 (1228)
T KOG0055|consen 798 IGIIIAFIYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEEL 877 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHH
Confidence 99999999999999999999999999988877766655544 67789999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 000406 1205 SEPKKKSVKRSQILGLTLGFSQGAMYVAYTFTLWFGAYLVKQGHASFGVVYKIFLILVLSSFSVGQLAGLAPDTSMAATA 1284 (1560)
Q Consensus 1205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~s 1284 (1560)
++..+...++..+.++.+++++.++++.+++.+|+|.+++..|.+++..++.+++.+.+....+.+...+.|++.++..+
T Consensus 878 ~~p~~~~~~~~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~A 957 (1228)
T KOG0055|consen 878 EKPRKSSFKRGLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIA 957 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCcccccc-ccccCCCCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHh
Q 000406 1285 IPAVLQITKRKPLIDNVK-GRKLERSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQ 1363 (1560)
Q Consensus 1285 ~~ri~~i~~~~~~~~~~~-~~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~ 1363 (1560)
+.+++++++++|..+... .......-.|.|+|+||+|+||.+|+.+||+|+||+|++|+++||||||||||||++.||.
T Consensus 958 a~~iF~i~dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLe 1037 (1228)
T KOG0055|consen 958 AGSIFEILDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLE 1037 (1228)
T ss_pred HHHHHHHhcCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHH
Confidence 999999999998766543 2212223357899999999999999999999999999999999999999999999999999
Q ss_pred cccCCCccEEEECCEecCCCCHHHHhhceEEEcCCCCCCCccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCcc
Q 000406 1364 RFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYE 1443 (1560)
Q Consensus 1364 rl~~p~~G~I~IdGvdi~~i~l~~LR~~I~~VpQdp~LF~gTIreNL~~g~~~~sd~eI~~al~~a~l~~~I~~Lp~Gld 1443 (1560)
|||+|++|.|.|||+||+++++++||++|++|.|||.||++||||||.||...++.+||.+|++.|++|+||.+||+|||
T Consensus 1038 RfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyD 1117 (1228)
T KOG0055|consen 1038 RFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYD 1117 (1228)
T ss_pred HhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCccc
Confidence 99999999999999999999999999999999999999999999999999656899999999999999999999999999
Q ss_pred ccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHHHhhcCEEEEE
Q 000406 1444 TQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIREANMIAVV 1523 (1560)
Q Consensus 1444 t~Vge~G~~LSGGQrQRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlsti~~aDrIlVL 1523 (1560)
|.|||+|.+|||||||||||||||+|||+|||||||||+||.++|+.||++|++...+||+|+|||||+||++||.|+|+
T Consensus 1118 T~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi 1197 (1228)
T KOG0055|consen 1118 TRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVL 1197 (1228)
T ss_pred CccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCEEEEecCHHHHHhhccChHHHHHHHHhhh
Q 000406 1524 RDGAVVEYGSHETLLASHLNGVYASLVRAETE 1555 (1560)
Q Consensus 1524 d~G~IvE~Gt~~eLl~~~~~g~y~~l~~~q~~ 1555 (1560)
++|+|+|+|+|++|++ ++|.|++|++.|..
T Consensus 1198 ~~G~VvE~GtH~~L~~--~~G~Y~~Lv~~q~~ 1227 (1228)
T KOG0055|consen 1198 KNGKVVEQGTHDELLA--KRGIYFRLVQLQSS 1227 (1228)
T ss_pred ECCEEEecccHHHHHh--CCCchHHHhhhccC
Confidence 9999999999999998 78999999998853
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-163 Score=1659.25 Aligned_cols=1209 Identities=29% Similarity=0.479 Sum_probs=1011.9
Q ss_pred CcccHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHHHHHH
Q 000406 328 KPVGLFSLFKYSTKLDMILVLLGCIGALINGGALPWYSYFFGNFVNKIANESSDPDKTQMMKDAEKICLLMTVLAAIVMM 407 (1560)
Q Consensus 328 ~~~~~~~l~~y~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 407 (1560)
.+++++.+|+|..+.+++.++++++++++.+++.|+++++++.+++.+... . .+..+++++++++++.++
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~---~-------~~~~~~~~~~~~~i~~~~ 112 (1466)
T PTZ00265 43 QKIPFFLPFKCLPASHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLG---E-------NVNDIIFSLVLIGIFQFI 112 (1466)
T ss_pred ccccHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---c-------hHHHHHHHHHHHHHHHHH
Confidence 567899999999998899999999999999999999999999999976421 0 122344556677778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 408 GAYLEITCWRLVGERSAQRIRTKYLRAVLRQDIAFFDTEVSTSDIMHGISSDIAQIQEVMGEKVAHFAHNIFTFICGYTV 487 (1560)
Q Consensus 408 ~~~l~~~~~~~~~~~~~~~lr~~l~~~ll~~~l~ffd~~~~~G~i~~r~s~Dv~~i~~~l~~~l~~~i~~i~~~i~~~ii 487 (1560)
+.+++.+++.++++++..++|.++|++++++|+.|||.. ++|+++++++.|++.+++.+...+..++..++++++++++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~-~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~ 191 (1466)
T PTZ00265 113 LSFISSFCMDVVTTKILKTLKLEFLKSVFYQDGQFHDNN-PGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIW 191 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999876 8899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHhHhH
Q 000406 488 GFLRSWKVSLVVLSVTPLMMFCGMAYKAVYVGLTSKEEASYRRAGSVAEQAISSIRTVFSFVAEDHFAVRYAGLLADSIP 567 (1560)
Q Consensus 488 ~~~~s~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIka~~~e~~~~~~~~~~~~~~~~ 567 (1560)
+|+++|.|++++++++|+++++..++.+......++.....++..+.+.|+++|+++||+|+.|+.+.++|.+..+...+
T Consensus 192 ~~~~sw~Lalv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~ 271 (1466)
T PTZ00265 192 SLFKNARLTLCITCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSK 271 (1466)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988888887777777778899999999999999999999999999999999888888
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 568 FGAKLGFAKGAGMGVIYLVTYATWALAFWYGSILVARK--------ELSGGAAIACFFGVNVGGRGLALSLSYFAQFAQG 639 (1560)
Q Consensus 568 ~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g--------~ls~g~~~~~l~~~~~~~~~l~~~~~~~~~~~~a 639 (1560)
...+.....++..++..++.++.+++++|+|.+++..| .+++|.+++++++++.....+..+.+.+..+..+
T Consensus 272 ~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a 351 (1466)
T PTZ00265 272 YILKANFMESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKS 351 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88898888888888888888999999999999999875 5788988888777766666677777888999999
Q ss_pred HHHHHHHHHHHccCCCCCCCCCCCCcCCCCcccEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHH
Q 000406 640 TVAATRVFEIIDRVPEIDPYNSEGRKLSSVSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFA 719 (1560)
Q Consensus 640 ~~a~~Ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ 719 (1560)
..|++|++++++.+++.++ ...+...+ ..+.|+++||+|+|+++++.++|+|+||+|++||++|||||||||||||++
T Consensus 352 ~~a~~ri~~ii~~~~~~~~-~~~~~~~~-~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~ 429 (1466)
T PTZ00265 352 LEATNSLYEIINRKPLVEN-NDDGKKLK-DIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILK 429 (1466)
T ss_pred HHHHHHHHHHHcCCCCCCC-CCCCccCC-CCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHH
Confidence 9999999999998765432 11111112 224799999999998654457999999999999999999999999999999
Q ss_pred HHhcCCCCCccEEEE-CCeecCCccHHHHhccEEEEecCCcCccccHHHHHhcCCC------------------------
Q 000406 720 LIERFYDPTKGLITL-DGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKE------------------------ 774 (1560)
Q Consensus 720 ll~g~~~~~~G~I~i-~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Tv~eNi~~g~~------------------------ 774 (1560)
+|+|+|+|++|+|++ ||.++++++..++|++|+||+|+|.||++||+|||.+|..
T Consensus 430 lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (1466)
T PTZ00265 430 LIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKN 509 (1466)
T ss_pred HHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhcccccccccccccccc
Confidence 999999999999999 5799999999999999999999999999999999999742
Q ss_pred ---------------------------------CCCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHH
Q 000406 775 ---------------------------------NATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIA 821 (1560)
Q Consensus 775 ---------------------------------~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRia 821 (1560)
..++++++++|+.+++++++..+|+|++|.+|++|.+|||||||||+
T Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRia 589 (1466)
T PTZ00265 510 KRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRIS 589 (1466)
T ss_pred ccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHH
Confidence 13467889999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCccccccCCEEEEEeCC--------------
Q 000406 822 LARAMIKDPRILLLDEPTSALDSESESIVQQAIDKIS--VGRTTIVIAHRLATVKNANTIVVLDQG-------------- 885 (1560)
Q Consensus 822 lARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~~D~i~vl~~G-------------- 885 (1560)
|||||+++|+|||||||||+||+++++.+++.|+++. +|+|+|+||||++++..||+|++|++|
T Consensus 590 IARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~ 669 (1466)
T PTZ00265 590 IARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGED 669 (1466)
T ss_pred HHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCcccccccccccccc
Confidence 9999999999999999999999999999999999885 489999999999999889999999986
Q ss_pred ---------------------------------eEEEecChhhHhh-hcchHHHHHHHHHhhccCcccc--chhcc-ccc
Q 000406 886 ---------------------------------SVVEIGNHRQLLE-RGGAYHDLVKLASEAVSQPQSK--QKDAK-RGI 928 (1560)
Q Consensus 886 ---------------------------------~iv~~G~~~~l~~-~~~~~~~l~~~~~~~~~~~~~~--~~~~~-~~~ 928 (1560)
+|+|+|+|+||++ .+|.|+.+++.+.......... ..... ...
T Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~ 749 (1466)
T PTZ00265 670 PTKDNKENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQKVSSKKSSNNDNDKDSDMKSS 749 (1466)
T ss_pred ccccccccccccccccccccccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhhccccccccccccccccccccc
Confidence 5999999999998 6899999997653321111000 00000 000
Q ss_pred chhhhhhhH-HHhhhh---hhhhhhhhhhhhhhhHHHh-hhhHhh-h-----h---CCCCchhhHHHHHHhhhhhHHHHH
Q 000406 929 EFSIYEKSV-IEVSRS---RYANEVSKSKYFKSMQAEI-QTVEEE-Q-----Q---KPRPRKFQLSEIWKLQRPEFAMII 994 (1560)
Q Consensus 929 ~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~-~-----~---~~~~~~~~~~~l~~~~~~~~~~l~ 994 (1560)
......... .+.... ........... .....+. .+.+.. . + ........+..++++.++++..++
T Consensus 750 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 828 (1466)
T PTZ00265 750 AYKDSERGYDPDEMNGNSKHENESASNKKS-CKMSDENASENNAGGKLPFLRNLFKRKPKAPNNLRIVYREIFSYKKDVT 828 (1466)
T ss_pred cccccccccccccccccccccccccccccc-cccccccccchhccccchhhhhccccccccchhHHHHHHHHHHHHHHHH
Confidence 000000000 000000 00000000000 0000000 000000 0 0 000111134455666677777788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 995 FGFILGMHAGAILSIFPLILGQALQVYFDDTASTLRRDVRYLSLALVGLGFGCIIFMTGQQGFCGWAGTKLTMRVRELLF 1074 (1560)
Q Consensus 995 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~ 1074 (1560)
++++++++.+++.+++|++++.+++.++... ........+.+++++++++..++.+++.++..+++.++..++|..+|
T Consensus 829 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~lR~~lf 906 (1466)
T PTZ00265 829 IIALSILVAGGLYPVFALLYAKYVSTLFDFA--NLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKTMKRRLF 906 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888899999999999999988766421 12223445677777778888888899999999999999999999999
Q ss_pred HHHHcCCCCCcccccCChHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 1075 RSILKQEPGWFDFEENSTGVLVSRLSIDSISFRSVLGDRFSVLLMGLSSAAVGLGVSLVLNWRLTLVAAALTPFTLGASY 1154 (1560)
Q Consensus 1075 ~~ll~~~~~ffd~~~~~~G~il~R~s~Di~~i~~~l~~~l~~~l~~~~~~i~~l~~~~~~~~~l~lv~l~~ipl~~~~~~ 1154 (1560)
++++++++.|||.+++++|++++|+++|++.++..+...+..++..++.++++++++++++|.++++++++++++.....
T Consensus 907 ~~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~l~~~~~~~~~~~~~~ 986 (1466)
T PTZ00265 907 ENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTYFIFMRVFA 986 (1466)
T ss_pred HHHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999977789999999999999999999999999999999999999999999999998877655444432222
Q ss_pred HHHHHhcchhh----------------hhhhHHHHHHHHHHHhcchhHHHhccchHHHHHHHHHHHhhhHHHHHHHHHHH
Q 000406 1155 LSLIINVGPKI----------------DNSSYAKASSIASGAVSNIRTVTTFSAQEQIINSFDKALSEPKKKSVKRSQIL 1218 (1560)
Q Consensus 1155 ~~~~~~~~~~~----------------~~~~~~~~~~~~~e~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 1218 (1560)
.........+. .++...+....+.|++.|+++||+|+.|+.+.++|.+..++..+...+...+.
T Consensus 987 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 1066 (1466)
T PTZ00265 987 IRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVN 1066 (1466)
T ss_pred HHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21111000000 12234566788999999999999999999999999999999998888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccCCcc
Q 000406 1219 GLTLGFSQGAMYVAYTFTLWFGAYLVKQGHASFGVVYKIFLILVLSSFSVGQLAGLAPDTSMAATAIPAVLQITKRKPLI 1298 (1560)
Q Consensus 1219 ~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~s~~ri~~i~~~~~~~ 1298 (1560)
++..++.+++.++..++++|+|++++..|.+++|.+++++.++.+...++..+..+++++..+..+.+|++++++.+++.
T Consensus 1067 ~~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~ 1146 (1466)
T PTZ00265 1067 SMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNI 1146 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcC
Confidence 99999999999999999999999999999999999998887766666678889999999999999999999999876543
Q ss_pred ccc--ccccc--CCCCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCC------
Q 000406 1299 DNV--KGRKL--ERSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDP------ 1368 (1560)
Q Consensus 1299 ~~~--~~~~~--~~~~~~~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p------ 1368 (1560)
+.. ..... .....+.|+|+||+|+||++++.+||+|+||+|+|||++||||+||||||||+++|+|||+|
T Consensus 1147 ~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~ 1226 (1466)
T PTZ00265 1147 DVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHI 1226 (1466)
T ss_pred CCCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccc
Confidence 211 11110 11123579999999999876556799999999999999999999999999999999999999
Q ss_pred ------------------------------------------------CccEEEECCEecCCCCHHHHhhceEEEcCCCC
Q 000406 1369 ------------------------------------------------NQGKVMIEGVDLREINVKWLRKQTALVGQEPA 1400 (1560)
Q Consensus 1369 ------------------------------------------------~~G~I~IdGvdi~~i~l~~LR~~I~~VpQdp~ 1400 (1560)
++|+|+|||+|++++++++||++|+||||||+
T Consensus 1227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~ 1306 (1466)
T PTZ00265 1227 VFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPM 1306 (1466)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCc
Confidence 69999999999999999999999999999999
Q ss_pred CCCccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCC
Q 000406 1401 LFAGTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEAS 1480 (1560)
Q Consensus 1401 LF~gTIreNL~~g~~~~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLARALLr~p~ILILDEaT 1480 (1560)
||+|||||||.+|.|+++++||++|++.+++++||.+||+||||.|||+|.+|||||||||||||||+|+|+||||||||
T Consensus 1307 LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaT 1386 (1466)
T PTZ00265 1307 LFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEAT 1386 (1466)
T ss_pred cccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHhc--CCceEEEEecChHHHhhcCEEEEEeC----CEE-EEecCHHHHHhhccChHHHHHHHHh
Q 000406 1481 SALDLESEKHVQDALRKVS--KRATTIVVAHRLSTIREANMIAVVRD----GAV-VEYGSHETLLASHLNGVYASLVRAE 1553 (1560)
Q Consensus 1481 SaLD~~Te~~I~~~L~~~~--~~~TvI~IAHRlsti~~aDrIlVLd~----G~I-vE~Gt~~eLl~~~~~g~y~~l~~~q 1553 (1560)
|+||++||+.|+++|++.. +++|+|+||||+++++.||+|+||++ |++ +|.|+|+||+++ ++|.|++|++.|
T Consensus 1387 SaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~~-~~g~Y~~l~~~~ 1465 (1466)
T PTZ00265 1387 SSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSV-QDGVYKKYVKLA 1465 (1466)
T ss_pred cccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHhc-CCChHHHHHhhc
Confidence 9999999999999999874 68999999999999999999999999 995 489999999972 489999999876
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-159 Score=1546.97 Aligned_cols=1095 Identities=23% Similarity=0.334 Sum_probs=878.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCchhhcc---CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 415 CWRLVGERSAQRIRTKYLRAVLRQDIAFFDT---EVSTSDIMHGISSDIAQIQEVMGEKVAHFAHNIFTFICGYTVGFLR 491 (1560)
Q Consensus 415 ~~~~~~~~~~~~lr~~l~~~ll~~~l~ffd~---~~~~G~i~~r~s~Dv~~i~~~l~~~l~~~i~~i~~~i~~~ii~~~~ 491 (1560)
.+.+...+.+.++|..+...++++-+..-.. ..+.|+++|.++.|+++++++.. +++.++...+.++++.++
T Consensus 261 ~~~~~~~~~g~r~R~al~~~IY~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~~-----~~h~~w~~Plqi~~~l~l 335 (1381)
T KOG0054|consen 261 QYFFVSFRVGMRLRSALISAIYRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAAC-----FLHLLWSAPLQIILALYL 335 (1381)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
Confidence 3455777888999999888888887776532 23789999999999999999864 677788888877777777
Q ss_pred HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHhHhH
Q 000406 492 SWKV----SLVVLSVTPLMMFCGMAYKAVYVGLTSKEEASYRRAGSVAEQAISSIRTVFSFVAEDHFAVRYAGLLADSIP 567 (1560)
Q Consensus 492 s~~l----~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIka~~~e~~~~~~~~~~~~~~~~ 567 (1560)
.|.. +++.++++.+++.++.++.+...+.+.+..+..+++.+.++|.++|||+||+|+||+.|.++.++.++++.+
T Consensus 336 Ly~~LG~sa~~G~~~~il~~p~n~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~ 415 (1381)
T KOG0054|consen 336 LYGLLGPSALAGVAVMVLLIPLNSFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELK 415 (1381)
T ss_pred HHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHH
Confidence 7764 455566667777788888999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 568 FGAKLGFAKGAGMGVIYLVTYATWALAFWYGSIL-VARKELSGGAAIACFFGVNVGGRGLALSLSYFAQFAQGTVAATRV 646 (1560)
Q Consensus 568 ~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l-v~~g~ls~g~~~~~l~~~~~~~~~l~~~~~~~~~~~~a~~a~~Ri 646 (1560)
...|....+++...+......+..++.| +.+. ...+.+++..+|+++.++.....|+..++..+.++.++.++++|+
T Consensus 416 ~lrk~~~~~~~~~~~~~~~p~lv~~~tF--~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri 493 (1381)
T KOG0054|consen 416 LLRKSAYLSALNSFLNFFSPVLVSVVTF--VVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRL 493 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999888877776665555444333 3343 456678998999999999999999999999999999999999999
Q ss_pred HHHHccCCCCCCCCCCCCcCCCCcccEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCC
Q 000406 647 FEIIDRVPEIDPYNSEGRKLSSVSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYD 726 (1560)
Q Consensus 647 ~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~ 726 (1560)
.+|+..+ |.++.........+.+..|+++|.+|+|+...+.+.|+||||+|++|+++||||+.|||||||+.+|+|+++
T Consensus 494 ~~fl~~~-e~~~~~~~~~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~ 572 (1381)
T KOG0054|consen 494 KEFLLSE-ELDPDSVERSPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMP 572 (1381)
T ss_pred HHHhcCc-ccCccccccCCCCCCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcc
Confidence 9999863 333322211122233457999999999986444558999999999999999999999999999999999999
Q ss_pred CCccEEEECCeecCCccHHHHhccEEEEecCCcCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHHHHHhCCCCCCcccC
Q 000406 727 PTKGLITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVG 806 (1560)
Q Consensus 727 ~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Tv~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~ 806 (1560)
..+|+|.++| .++||||+||+|++||||||+||.+. +.++..++.+.|.++++++.||.|+.|.+|
T Consensus 573 ~~sG~v~v~g-------------siaYv~Q~pWI~ngTvreNILFG~~~-d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIG 638 (1381)
T KOG0054|consen 573 KLSGSVAVNG-------------SVAYVPQQPWIQNGTVRENILFGSPY-DEERYDKVIKACALKKDLEILPFGDLTEIG 638 (1381)
T ss_pred cccceEEEcC-------------eEEEeccccHhhCCcHHHhhhcCccc-cHHHHHHHHHHccCHhHHhhcCCCCcceec
Confidence 9999999998 49999999999999999999999875 556677777888999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHH-HHHHHHHHhcCCcEEEEEecCccccccCCEEEEEeCC
Q 000406 807 DRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESES-IVQQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQG 885 (1560)
Q Consensus 807 ~~g~~LSgGQrQRialARAl~~~p~illLDEpts~LD~~~~~-~i~~~l~~~~~~~tvi~itH~l~~i~~~D~i~vl~~G 885 (1560)
|+|.+|||||||||+||||+|++++|+|||+|+||||+++.+ .+.++|+.+.++||+|+|||.++.+++||+|++|++|
T Consensus 639 ErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G 718 (1381)
T KOG0054|consen 639 ERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDG 718 (1381)
T ss_pred CCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCC
Confidence 999999999999999999999999999999999999999755 5667888888899999999999999999999999999
Q ss_pred eEEEecChhhHhhhcchHHHHHHHHHhhccCccccchhcccccchhhhhhhHHHhhhhhhhhhhhhhhhhhhhHHHhhhh
Q 000406 886 SVVEIGNHRQLLERGGAYHDLVKLASEAVSQPQSKQKDAKRGIEFSIYEKSVIEVSRSRYANEVSKSKYFKSMQAEIQTV 965 (1560)
Q Consensus 886 ~iv~~G~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 965 (1560)
+|++.|+++|+++....|.++..........+ ......+.. + ............... ..+..+..+.. +.+..
T Consensus 719 ~I~~~Gty~el~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~-~-~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~ 791 (1381)
T KOG0054|consen 719 KIVESGTYEELLKSGGDFAELAHEEESEQEEE-ASEKDLESG-E-SSRESESRSLESLSS--EEEKSKDEKEE--EDKLV 791 (1381)
T ss_pred eEecccCHHHHHhcchhHHHHhhccchhhccc-ccccccccc-c-cccchhhhhhhhhcc--cccccccccch--hhHHH
Confidence 99999999999988888877733221111110 000000000 0 000000000000000 00000000000 00000
Q ss_pred HhhhhCCCCchhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhh--hhHHHHHHHHHHH
Q 000406 966 EEEQQKPRPRKFQLSEIWKLQRPEFAMIIFGFILGMHAGAILSIFPLILGQALQVYFDDTASTLR--RDVRYLSLALVGL 1043 (1560)
Q Consensus 966 ~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~l 1043 (1560)
.+++...+.+.+..++.|.+...+.+...+++ +..++...+......++..|.+....... ....++.++|.++
T Consensus 792 --~~ee~~~G~v~~~vY~~Y~~a~~g~~~~~~~~--~~~v~~~~~~~~~~~WLs~W~~~~~~~~~~~~~~~~~~~vY~~l 867 (1381)
T KOG0054|consen 792 --QEEERETGKVSWSVYKKYIKAAGGFLLVLLIL--LLFVLTQVLQIASNYWLSYWTDDGEDNGTTTVSTSFYLGVYALL 867 (1381)
T ss_pred --HHHHHhcCEeeHHHHHHHHHhcccHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcCCcccccccCCCcchHHHHHHHH
Confidence 11112445566677777776633333222211 11112222223333444445443322221 3456788889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccCChHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 000406 1044 GFGCIIFMTGQQGFCGWAGTKLTMRVRELLFRSILKQEPGWFDFEENSTGVLVSRLSIDSISFRSVLGDRFSVLLMGLSS 1123 (1560)
Q Consensus 1044 ~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~ll~~~~~ffd~~~~~~G~il~R~s~Di~~i~~~l~~~l~~~l~~~~~ 1123 (1560)
+++..++..++.+.+...+.+++.+||+.+++++++.||+||| .+|+|+|+|||++|++.+|..++..+..++..++.
T Consensus 868 ~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFd--tTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~ 945 (1381)
T KOG0054|consen 868 GVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFD--TTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLN 945 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcC--CCCccchhhhcccchHHHHHhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998 79999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----hhhhhhhHHHHHHHHHHHhcchhHHHhccchHHHHHH
Q 000406 1124 AAVGLGVSLVLNWRLTLVAAALTPFTLGASYLSLIINVG----PKIDNSSYAKASSIASGAVSNIRTVTTFSAQEQIINS 1199 (1560)
Q Consensus 1124 ~i~~l~~~~~~~~~l~lv~l~~ipl~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~e~l~gi~tIraf~~e~~~~~~ 1199 (1560)
++..++++.+..|++.+ +++|+.++++++..++... ++.+...+++..++++|++.|+.|||+|+.+++|.++
T Consensus 946 ~l~~~~vi~~~~P~fli---~~~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~ 1022 (1381)
T KOG0054|consen 946 VLGILVVISYVTPWFLI---AIIPLGVIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQE 1022 (1381)
T ss_pred HHHHHHHhhHHhHHHHH---HHHHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHH
Confidence 98888888887776644 4455555555554444333 3334557888999999999999999999999999999
Q ss_pred HHHHHhhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 000406 1200 FDKALSEPKKKSVK---RSQILGLTLGFSQGAMYVAYTFTLWFGAYLVKQGHASFGVVYKIFLILVLSSFSVGQLAGLAP 1276 (1560)
Q Consensus 1200 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~i~~l~~~~~ 1276 (1560)
+....|.+.+..+. .++|.++...+...++.+..++. +.+...+.++.|.+...+.+.......++.++....
T Consensus 1023 ~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~~~al~----~vl~~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~ 1098 (1381)
T KOG0054|consen 1023 NDELIDENSRAFFLSISANRWLAVRLELLGNLVVLIAALF----AVLLPSGLISPGLVGLSLSYALQLTGLLQWLVRQSS 1098 (1381)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999887654 56666666655433332222221 112222226678888888888888888999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCccc---cccccccCCCCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCC
Q 000406 1277 DTSMAATAIPAVLQITKRKPLID---NVKGRKLERSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGS 1353 (1560)
Q Consensus 1277 ~~~~~~~s~~ri~~i~~~~~~~~---~~~~~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGS 1353 (1560)
+++..++++||+.++.+.++|.+ +...++..||..|.|+|+|++.+|.++ .++|||||||+|+|||||||||||||
T Consensus 1099 elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~-lp~VLk~is~~I~p~eKVGIVGRTGa 1177 (1381)
T KOG0054|consen 1099 ELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPN-LPLVLKGISFTIKPGEKVGIVGRTGA 1177 (1381)
T ss_pred HHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCC-CcchhcCceEEEcCCceEEEeCCCCC
Confidence 99999999999999998766511 112256678989999999999999755 56899999999999999999999999
Q ss_pred CHHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhhceEEEcCCCCCCCccHHHHHhcCCCCCCHHHHHHHHHHHhHHH
Q 000406 1354 GKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHK 1433 (1560)
Q Consensus 1354 GKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~~I~~VpQdp~LF~gTIreNL~~g~~~~sd~eI~~al~~a~l~~ 1433 (1560)
|||||+++|+|+.+|.+|+|.|||+||+++++++||+++++|||||+||+||||+||||.+ +.+|++||+||++|+|++
T Consensus 1178 GKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf~-e~sD~~IW~ALe~~~Lk~ 1256 (1381)
T KOG0054|consen 1178 GKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPFD-EYSDDEIWEALERCQLKD 1256 (1381)
T ss_pred CHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCccc-ccCHHHHHHHHHHhChHH
Confidence 9999999999999999999999999999999999999999999999999999999999965 789999999999999999
Q ss_pred HHHhCCCCccccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHH
Q 000406 1434 FISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLST 1513 (1560)
Q Consensus 1434 ~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlst 1513 (1560)
+|.++|.|||++|.|+|.|||.||||++||||||||++||||||||||++|++|+..||++||+.|++||||+||||++|
T Consensus 1257 ~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~T 1336 (1381)
T KOG0054|consen 1257 VVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNT 1336 (1381)
T ss_pred HHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCEEEEEeCCEEEEecCHHHHHhhccChHHHHHHHHhh
Q 000406 1514 IREANMIAVVRDGAVVEYGSHETLLASHLNGVYASLVRAET 1554 (1560)
Q Consensus 1514 i~~aDrIlVLd~G~IvE~Gt~~eLl~~~~~g~y~~l~~~q~ 1554 (1560)
|.+||||+|||+|+|+|+|+|++|++ ++++.|++++.+..
T Consensus 1337 Vmd~DrVlVld~G~v~EfdsP~~Ll~-~~~S~f~~~l~~~~ 1376 (1381)
T KOG0054|consen 1337 VMDSDRVLVLDAGRVVEFDSPAELLS-DKDSLFSSLLKEAA 1376 (1381)
T ss_pred hhhcCeEEEeeCCeEeecCChHHHHh-CCcchHHHHHHHHH
Confidence 99999999999999999999999998 47899987776654
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-150 Score=1544.54 Aligned_cols=1155 Identities=18% Similarity=0.240 Sum_probs=846.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 347 VLLGCIGALINGGALPWYSYFFGNFVNKIANESSDPDKTQMMKDAEKICLLMTVLAAIVMMGAYLEITCWRLVGERSAQR 426 (1560)
Q Consensus 347 ~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ 426 (1560)
+++++++.++..++....+++++.+++.+.... . . .......+++++ ..++..++..-.......++.++...
T Consensus 303 ~~~~~~~~i~~~~~~~~~P~ll~~li~~v~~~~--~--~--~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~ir~~ 375 (1622)
T PLN03130 303 FWLGGFFKIGNDLSQFVGPLLLNLLLESMQNGE--P--A--WIGYIYAFSIFV-GVVLGVLCEAQYFQNVMRVGFRLRST 375 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--c--c--hHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556666666667778888888765321 1 0 111111111111 11111111100111133567777788
Q ss_pred HHHHHHHHHHhcCchhhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 427 IRTKYLRAVLRQDIAFFDTEVSTSDIMHGISSDIAQIQEVMGEKVAHFAHNIFTFICGYTVGFLRSWKVSLVVLSVTPLM 506 (1560)
Q Consensus 427 lr~~l~~~ll~~~l~ffd~~~~~G~i~~r~s~Dv~~i~~~l~~~l~~~i~~i~~~i~~~ii~~~~s~~l~lv~l~~~pl~ 506 (1560)
++..+++++++++..+++.. ++|+++|++++|++.+++.+. .+..++...+.+++++++++......+++.++++.++
T Consensus 376 L~~~i~~k~L~l~~~~~~~~-~~G~ivnl~s~Dv~~i~~~~~-~l~~l~~~pl~ii~~~~lL~~~lg~~~l~g~~v~~l~ 453 (1622)
T PLN03130 376 LVAAVFRKSLRLTHEGRKKF-TSGKITNLMTTDAEALQQICQ-QLHTLWSAPFRIIIAMVLLYQQLGVASLIGSLMLVLM 453 (1622)
T ss_pred HHHHHHHHHhcCChhhcCCC-CHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999654 899999999999999999874 3444444444444433333322112222222233344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHhHhHHHhHHHHHHHHHHHHHHHH
Q 000406 507 MFCGMAYKAVYVGLTSKEEASYRRAGSVAEQAISSIRTVFSFVAEDHFAVRYAGLLADSIPFGAKLGFAKGAGMGVIYLV 586 (1560)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIka~~~e~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ 586 (1560)
+.+..++.+...+..++..+..++..+.+.|.++|+++||+|+||+.+.+++.+.++++.+...+......+...+...+
T Consensus 454 ~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~ 533 (1622)
T PLN03130 454 FPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNSFILNSI 533 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667777777788888888999999999999999999999999999999999888777666666555444333222
Q ss_pred HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCcC
Q 000406 587 TYATWALAFWYGSILVARKELSGGAAIACFFGVNVGGRGLALSLSYFAQFAQGTVAATRVFEIIDRVPEIDPYNSEGRKL 666 (1560)
Q Consensus 587 ~~~~~~~~~~~g~~lv~~g~ls~g~~~~~l~~~~~~~~~l~~~~~~~~~~~~a~~a~~Ri~~~l~~~~~~~~~~~~~~~~ 666 (1560)
.. .+.++++|++++.+|.++++.+++++.++..+..|+..++..+..+.++.++++||.++++.++.... . .. ..
T Consensus 534 ~~--~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~-~-~~-~~ 608 (1622)
T PLN03130 534 PV--LVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLL-P-NP-PL 608 (1622)
T ss_pred HH--HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccc-c-CC-cc
Confidence 21 23455678888889999999999999888888889999888999999999999999999975432111 0 10 01
Q ss_pred CCCcccEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCc-cEEEECCeecCCccHH
Q 000406 667 SSVSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTK-GLITLDGHDLKSLQVK 745 (1560)
Q Consensus 667 ~~~~g~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~-G~I~i~g~~i~~~~~~ 745 (1560)
.+..+.|+++|++|+|+.++++++|+|+||+|++||+++||||||||||||+++|+|+++|++ |+|.+.
T Consensus 609 ~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~---------- 678 (1622)
T PLN03130 609 EPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIR---------- 678 (1622)
T ss_pred cCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEc----------
Confidence 112357999999999985444679999999999999999999999999999999999999999 999854
Q ss_pred HHhccEEEEecCCcCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHH
Q 000406 746 WLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARA 825 (1560)
Q Consensus 746 ~lr~~i~~v~Q~~~lf~~Tv~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARA 825 (1560)
++|+||+|+||||++||||||.||.+. +++++.++++.|+++++++.||+|++|.+|++|.+|||||||||+||||
T Consensus 679 ---~~Iayv~Q~p~LfngTIreNI~fg~~~-d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARA 754 (1622)
T PLN03130 679 ---GTVAYVPQVSWIFNATVRDNILFGSPF-DPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARA 754 (1622)
T ss_pred ---CeEEEEcCccccCCCCHHHHHhCCCcc-cHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999999874 6788999999999999999999999999999999999999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHH-HHHHHHhcCCcEEEEEecCccccccCCEEEEEeCCeEEEecChhhHhhhcchHH
Q 000406 826 MIKDPRILLLDEPTSALDSESESIV-QQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLERGGAYH 904 (1560)
Q Consensus 826 l~~~p~illLDEpts~LD~~~~~~i-~~~l~~~~~~~tvi~itH~l~~i~~~D~i~vl~~G~iv~~G~~~~l~~~~~~~~ 904 (1560)
+|++|+||||||||||||+++++.+ .++++...+++|+|+|||+++.+..||+|++|++|+|++.|++++++++.+.|.
T Consensus 755 ly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~~~~~~~ 834 (1622)
T PLN03130 755 VYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSNNGPLFQ 834 (1622)
T ss_pred HhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHHHHhcchhHH
Confidence 9999999999999999999998866 567777778999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHhhccCccccchhcccccchhhhhhhHHHhhhhhhhhhhhhhhhhhhhHHHhhhhHhhhhCCCCchhhHHHHHH
Q 000406 905 DLVKLASEAVSQPQSKQKDAKRGIEFSIYEKSVIEVSRSRYANEVSKSKYFKSMQAEIQTVEEEQQKPRPRKFQLSEIWK 984 (1560)
Q Consensus 905 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 984 (1560)
++...........+.......... ......... ........+.....+.......+ +++ ...+.+.+..++.
T Consensus 835 ~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~e~---~~~g~v~~~vy~~ 906 (1622)
T PLN03130 835 KLMENAGKMEEYVEENGEEEDDQT--SSKPVANGN--ANNLKKDSSSKKKSKEGKSVLIK-QEE---RETGVVSWKVLER 906 (1622)
T ss_pred HHHHhccccccccccccccccccc--ccccccccc--cccccccccccccccccchhhhh-HHH---HhcCccCHHHHHH
Confidence 887643211100000000000000 000000000 00000000000000000000001 111 1123334555555
Q ss_pred hhhhhHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 985 LQRPEFAM-I-IFGFILGMHAGAILSIFPLILGQALQVYFDDTASTLRRDVRYLSLALVGLGFGCIIFMTGQQGFCGWAG 1062 (1560)
Q Consensus 985 ~~~~~~~~-l-~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 1062 (1560)
|.+..... + ++.+++.++..+ +......++..|.+..... .....++.+++++++++..++.+++.++..+.+
T Consensus 907 Y~~~~g~~~~~~~~~~~~~~~~~----~~~~~~~wl~~w~~~~~~~-~~~~~~~~~i~~~l~~~~~i~~~~~~~~~~~~~ 981 (1622)
T PLN03130 907 YKNALGGAWVVMILFLCYVLTEV----FRVSSSTWLSEWTDQGTPK-THGPLFYNLIYALLSFGQVLVTLLNSYWLIMSS 981 (1622)
T ss_pred HHHHhccHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhccccC-CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55442221 1 111111111111 1112222333333321111 122334566677777888888888888889999
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCcccccCChHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 1063 TKLTMRVRELLFRSILKQEPGWFDFEENSTGVLVSRLSIDSISFRSVLGDRFSVLLMGLSSAAVGLGVSLVLNWRLTLVA 1142 (1560)
Q Consensus 1063 ~~~~~~Lr~~l~~~ll~~~~~ffd~~~~~~G~il~R~s~Di~~i~~~l~~~l~~~l~~~~~~i~~l~~~~~~~~~l~lv~ 1142 (1560)
.++..++|..++++++++|+.||| ++++|+++|||++|++.++..++..+..++..++.+++.++++++++|...+
T Consensus 982 ~~~~~~L~~~l~~~ll~~p~~ffd--~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~~~~~~~~-- 1057 (1622)
T PLN03130 982 LYAAKRLHDAMLGSILRAPMSFFH--TNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIVSTISLW-- 1057 (1622)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHhc--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 999999999999999999999998 7999999999999999999999999999999988888888888887764332
Q ss_pred HHHHHHHHHHHHHHHHHhc----chhhhhhhHHHHHHHHHHHhcchhHHHhccchHHHHHHHHHHHhhhHHHHHHHH---
Q 000406 1143 AALTPFTLGASYLSLIINV----GPKIDNSSYAKASSIASGAVSNIRTVTTFSAQEQIINSFDKALSEPKKKSVKRS--- 1215 (1560)
Q Consensus 1143 l~~ipl~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~--- 1215 (1560)
+++|+.+++.++...+.. ..+......++..+++.|++.|+++||+|+.++.+.+.+.+..+...+..+...
T Consensus 1058 -~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 1136 (1622)
T PLN03130 1058 -AIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLVNMSSN 1136 (1622)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233333322222222211 112223455678899999999999999999999988888877776655443322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-cc-----HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 000406 1216 QILGLTLGFSQGAMYVAYTFTLWFGAYLVKQGH-AS-----FGVVYKIFLILVLSSFSVGQLAGLAPDTSMAATAIPAVL 1289 (1560)
Q Consensus 1216 ~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~-~s-----~g~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~s~~ri~ 1289 (1560)
+|.+....+ +..+++++.+...+..+. .. .+.+..++.+.......+..+...+...+..+.+++|+.
T Consensus 1137 ~wl~~~l~~------~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~~sveRi~ 1210 (1622)
T PLN03130 1137 RWLAIRLET------LGGLMIWLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVG 1210 (1622)
T ss_pred HHHHHHHHH------HHHHHHHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222111 111222222333333321 11 122223333444555666777777888899999999999
Q ss_pred HHhccCCccccc---cccccCCCCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccc
Q 000406 1290 QITKRKPLIDNV---KGRKLERSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFY 1366 (1560)
Q Consensus 1290 ~i~~~~~~~~~~---~~~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~ 1366 (1560)
++.+.+++.+.. ..+...|+..+.|+|+||+|+|+++ .++||+||||+|+|||+||||||||||||||+++|+|+|
T Consensus 1211 e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~ 1289 (1622)
T PLN03130 1211 TYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIV 1289 (1622)
T ss_pred HHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcC
Confidence 998876654321 1122235556789999999999643 347999999999999999999999999999999999999
Q ss_pred CCCccEEEECCEecCCCCHHHHhhceEEEcCCCCCCCccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCccccc
Q 000406 1367 DPNQGKVMIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQV 1446 (1560)
Q Consensus 1367 ~p~~G~I~IdGvdi~~i~l~~LR~~I~~VpQdp~LF~gTIreNL~~g~~~~sd~eI~~al~~a~l~~~I~~Lp~Gldt~V 1446 (1560)
+|++|+|+|||+|++++++++||++|++|||||+||+|||||||++++ +++|+|+++||+.++++++|.++|+||||+|
T Consensus 1290 ~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~-~~tdeei~~Al~~a~l~~~I~~lp~GLdt~V 1368 (1622)
T PLN03130 1290 ELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFN-EHNDADLWESLERAHLKDVIRRNSLGLDAEV 1368 (1622)
T ss_pred CCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCC-CCCHHHHHHHHHHcCcHHHHHhCccccCccc
Confidence 999999999999999999999999999999999999999999999986 6799999999999999999999999999999
Q ss_pred cCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHHHhhcCEEEEEeCC
Q 000406 1447 GESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIREANMIAVVRDG 1526 (1560)
Q Consensus 1447 ge~G~~LSGGQrQRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlsti~~aDrIlVLd~G 1526 (1560)
||+|.+|||||||||||||||||+|+|||||||||+||.+||+.|+++|++.+++||+|+||||++|+++||||+||++|
T Consensus 1369 ge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~DrIlVLd~G 1448 (1622)
T PLN03130 1369 SEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAG 1448 (1622)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCHHHHHhhccChHHHHHHHHhhhh
Q 000406 1527 AVVEYGSHETLLASHLNGVYASLVRAETEA 1556 (1560)
Q Consensus 1527 ~IvE~Gt~~eLl~~~~~g~y~~l~~~q~~~ 1556 (1560)
+|+|+|+|+||++ +++|.|++|++.++..
T Consensus 1449 ~IvE~Gt~~eLl~-~~~g~f~~L~~~~~~~ 1477 (1622)
T PLN03130 1449 RVVEFDTPENLLS-NEGSAFSKMVQSTGAA 1477 (1622)
T ss_pred EEEEeCCHHHHHh-CCCCHHHHHHHHcChh
Confidence 9999999999998 3479999999887653
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-148 Score=1533.94 Aligned_cols=1154 Identities=19% Similarity=0.252 Sum_probs=846.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 347 VLLGCIGALINGGALPWYSYFFGNFVNKIANESSDPDKTQMMKDAEKICLLMTVLAAIVMMGAYLEITCWRLVGERSAQR 426 (1560)
Q Consensus 347 ~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ 426 (1560)
+++++++.++..++....|++++.+++.+.... . . .... .+++++.+..++..++.....+....++.++...
T Consensus 303 ~~~~~~~~i~~~~~~~~~P~ll~~li~~~~~~~--~--~--~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~ 375 (1495)
T PLN03232 303 FWLGGIFKIGHDLSQFVGPVILSHLLQSMQEGD--P--A--WVGY-VYAFLIFFGVTFGVLCESQYFQNVGRVGFRLRST 375 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--c--c--chHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555556666666667778888888764321 1 0 0010 1111111111111111111112224567777778
Q ss_pred HHHHHHHHHHhcCchhhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Q 000406 427 IRTKYLRAVLRQDIAFFDTEVSTSDIMHGISSDIAQIQEVMGEKVAHFAHNIFTFICGYTVGFLRSWKVSLVVLSV---T 503 (1560)
Q Consensus 427 lr~~l~~~ll~~~l~ffd~~~~~G~i~~r~s~Dv~~i~~~l~~~l~~~i~~i~~~i~~~ii~~~~s~~l~lv~l~~---~ 503 (1560)
++..+++++++++..+++.. ++|+++|++++|++.+++.+ ..+..++...+.++++++++ .+.++++.++. +
T Consensus 376 l~~~i~~k~l~l~~~~~~~~-~~G~i~n~ls~Dv~~i~~~~-~~l~~l~~~p~~ii~~~~~l---~~~lg~~~l~~~~v~ 450 (1495)
T PLN03232 376 LVAAIFHKSLRLTHEARKNF-ASGKVTNMITTDANALQQIA-EQLHGLWSAPFRIIVSMVLL---YQQLGVASLFGSLIL 450 (1495)
T ss_pred HHHHHHHHHhcCChhhcCCC-CHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHH
Confidence 88899999999999998655 89999999999999999975 33333333333333322221 22233322222 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHhHhHHHhHHHHHHHHHHHHH
Q 000406 504 PLMMFCGMAYKAVYVGLTSKEEASYRRAGSVAEQAISSIRTVFSFVAEDHFAVRYAGLLADSIPFGAKLGFAKGAGMGVI 583 (1560)
Q Consensus 504 pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIka~~~e~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~ 583 (1560)
.+++.+..++.+...+..++.++..++..+.+.|.++|+++||+|+||+.+.+++.+.++++.+...+.....+....+.
T Consensus 451 ~l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~ 530 (1495)
T PLN03232 451 FLLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFIL 530 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333455667777888888888889999999999999999999999999999999999888877777766655443332
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCC
Q 000406 584 YLVTYATWALAFWYGSILVARKELSGGAAIACFFGVNVGGRGLALSLSYFAQFAQGTVAATRVFEIIDRVPEIDPYNSEG 663 (1560)
Q Consensus 584 ~~~~~~~~~~~~~~g~~lv~~g~ls~g~~~~~l~~~~~~~~~l~~~~~~~~~~~~a~~a~~Ri~~~l~~~~~~~~~~~~~ 663 (1560)
.... ..+.++++|++++.+|.+++|.+++++.++..+..++..++..+..+.++.++++|+.++++.+++.... .
T Consensus 531 ~~~~--~~~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~--~- 605 (1495)
T PLN03232 531 NSIP--VVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQ--N- 605 (1495)
T ss_pred HHHH--HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccc--c-
Confidence 2222 1233467788888899999999999998888888899999999999999999999999999864432111 1
Q ss_pred CcCCCCcccEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCcc
Q 000406 664 RKLSSVSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQ 743 (1560)
Q Consensus 664 ~~~~~~~g~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~ 743 (1560)
....+..+.|+++|++|+|+.+++.++|+|+||+|++||+++||||||||||||+++|+|+++|++|.+.
T Consensus 606 ~~~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~---------- 675 (1495)
T PLN03232 606 PPLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV---------- 675 (1495)
T ss_pred CCcCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE----------
Confidence 1111223579999999999854446799999999999999999999999999999999999999998763
Q ss_pred HHHHhccEEEEecCCcCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHH
Q 000406 744 VKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALA 823 (1560)
Q Consensus 744 ~~~lr~~i~~v~Q~~~lf~~Tv~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialA 823 (1560)
.+|++|+||+|+||||++||||||.||.+ .+++++.++++.++++++++.+|+|++|.+||+|.+|||||||||+||
T Consensus 676 --~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~-~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLA 752 (1495)
T PLN03232 676 --VIRGSVAYVPQVSWIFNATVRENILFGSD-FESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMA 752 (1495)
T ss_pred --EecCcEEEEcCccccccccHHHHhhcCCc-cCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHH
Confidence 24678999999999999999999999986 578889999999999999999999999999999999999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHH-HHHHHhcCCcEEEEEecCccccccCCEEEEEeCCeEEEecChhhHhhhcch
Q 000406 824 RAMIKDPRILLLDEPTSALDSESESIVQ-QAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLERGGA 902 (1560)
Q Consensus 824 RAl~~~p~illLDEpts~LD~~~~~~i~-~~l~~~~~~~tvi~itH~l~~i~~~D~i~vl~~G~iv~~G~~~~l~~~~~~ 902 (1560)
||+|++|+||||||||||||+++++.+. ++++...+++|+|+||||++.+..||+|++|++|+|++.|++++++++++.
T Consensus 753 RAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~~~~~ 832 (1495)
T PLN03232 753 RAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKSGSL 832 (1495)
T ss_pred HHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHHHhcchh
Confidence 9999999999999999999999988765 557766789999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHhhccCccccchhcccccchhhhhhhHHHhhhhhhhhhhhhhhhhhhhHHHhhhhHhhhhCCCCchhhHHHH
Q 000406 903 YHDLVKLASEAVSQPQSKQKDAKRGIEFSIYEKSVIEVSRSRYANEVSKSKYFKSMQAEIQTVEEEQQKPRPRKFQLSEI 982 (1560)
Q Consensus 903 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 982 (1560)
|.+++..+.......+.... . +... .......... ..... ..... .+...... ..+++. ..+.+.+..+
T Consensus 833 ~~~l~~~~~~~~~~~~~~~~-~-~~~~-~~~~~~~~~~-~~~~~--~~~~~-~~~~~~~~-~~~e~~---~~g~v~~~vy 901 (1495)
T PLN03232 833 FKKLMENAGKMDATQEVNTN-D-ENIL-KLGPTVTIDV-SERNL--GSTKQ-GKRGRSVL-VKQEER---ETGIISWNVL 901 (1495)
T ss_pred HHHHHHhccccccccccccc-c-cccc-cccccccccc-ccccc--ccccc-cccchhhh-hhHHHH---hcCcccHHHH
Confidence 88887654321110000000 0 0000 0000000000 00000 00000 00000000 011111 1233445566
Q ss_pred HHhhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 983 WKLQRPEFAMII-FGFILGMHAGAILSIFPLILGQALQVYFDDTASTLRRDVRYLSLALVGLGFGCIIFMTGQQGFCGWA 1061 (1560)
Q Consensus 983 ~~~~~~~~~~l~-~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 1061 (1560)
++|.+...+... ..+++..+ +..++......++..|.+..... .....+|..++++++++..++.+++.++..+.
T Consensus 902 ~~y~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~wl~~w~~~~~~~-~~~~~~~l~~y~~l~~~~~~~~~~~~~~~~~~ 977 (1495)
T PLN03232 902 MRYNKAVGGLWVVMILLVCYL---TTEVLRVSSSTWLSIWTDQSTPK-SYSPGFYIVVYALLGFGQVAVTFTNSFWLISS 977 (1495)
T ss_pred HHHHHHcCcHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcccCCC-CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666655332111 11111111 11111111122333333221110 11234567777888888888888888889999
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCcccccCChHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 1062 GTKLTMRVRELLFRSILKQEPGWFDFEENSTGVLVSRLSIDSISFRSVLGDRFSVLLMGLSSAAVGLGVSLVLNWRLTLV 1141 (1560)
Q Consensus 1062 ~~~~~~~Lr~~l~~~ll~~~~~ffd~~~~~~G~il~R~s~Di~~i~~~l~~~l~~~l~~~~~~i~~l~~~~~~~~~l~lv 1141 (1560)
+.+++.++|++++++++++|+.||+ ++++|+++||+++|++.++..++..+..++..++.+++.+++++++++...+
T Consensus 978 ~~~~~~~lr~~l~~~ll~~p~~ff~--~~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~- 1054 (1495)
T PLN03232 978 SLHAAKRLHDAMLNSILRAPMLFFH--TNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVSTISLW- 1054 (1495)
T ss_pred HHHHHHHHHHHHHHHHHcCCeeeeC--cCCchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 9999999999999999999999998 7999999999999999999999999988888888888777777776653332
Q ss_pred HHHHHHHHHHHHHHHHHHh----cchhhhhhhHHHHHHHHHHHhcchhHHHhccchHHHHHHHHHHHhhhHHHHHHHHHH
Q 000406 1142 AAALTPFTLGASYLSLIIN----VGPKIDNSSYAKASSIASGAVSNIRTVTTFSAQEQIINSFDKALSEPKKKSVKRSQI 1217 (1560)
Q Consensus 1142 ~l~~ipl~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~ 1217 (1560)
+++|+.+++.++...+. ...+......++..+++.|++.|+++||+|+.++.+.+++.+..+...+..+.....
T Consensus 1055 --~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1132 (1495)
T PLN03232 1055 --AIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLANTSS 1132 (1495)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333333222222211 112222445667889999999999999999999999888888777666554432221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcc----cHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 000406 1218 LGLTLGFSQGAMYVAYTFTLWFGAYLVK-QGHA----SFG-VVYKIFLILVLSSFSVGQLAGLAPDTSMAATAIPAVLQI 1291 (1560)
Q Consensus 1218 ~~~~~~~~~~~~~~~~~~~~~~g~~lv~-~g~~----s~g-~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~s~~ri~~i 1291 (1560)
..+ ..+. +..+..+++.+.+...+. .+.+ +++ .+..++.+......++..+...+.+.+.+..+++|+.++
T Consensus 1133 ~~w-l~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~eRi~e~ 1209 (1495)
T PLN03232 1133 NRW-LTIR--LETLGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNY 1209 (1495)
T ss_pred HHH-HHHH--HHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 1111 111112222222333333 2332 112 222234444455667788888899999999999999999
Q ss_pred hccCCccccc-c--ccccCCCCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCC
Q 000406 1292 TKRKPLIDNV-K--GRKLERSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDP 1368 (1560)
Q Consensus 1292 ~~~~~~~~~~-~--~~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p 1368 (1560)
.+.+++.+.. . .+...|+..+.|+|+||+|+|+++ .++||+||||+|+|||+||||||||||||||+++|+|+|+|
T Consensus 1210 ~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~-~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p 1288 (1495)
T PLN03232 1210 IDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPG-LPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVEL 1288 (1495)
T ss_pred hcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCC-CCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcC
Confidence 9876654321 1 112234555789999999999643 35799999999999999999999999999999999999999
Q ss_pred CccEEEECCEecCCCCHHHHhhceEEEcCCCCCCCccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCccccccC
Q 000406 1369 NQGKVMIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGE 1448 (1560)
Q Consensus 1369 ~~G~I~IdGvdi~~i~l~~LR~~I~~VpQdp~LF~gTIreNL~~g~~~~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge 1448 (1560)
++|+|+|||+|++++++++||++|++|||||+||+|||||||++++ +++|+|+++|++.++++++|.++|+||||+|||
T Consensus 1289 ~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~-~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e 1367 (1495)
T PLN03232 1289 EKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFS-EHNDADLWEALERAHIKDVIDRNPFGLDAEVSE 1367 (1495)
T ss_pred CCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCC-CCCHHHHHHHHHHcCCHHHHHhCcCCCCceecC
Confidence 9999999999999999999999999999999999999999999975 689999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHHHhhcCEEEEEeCCEE
Q 000406 1449 SGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIREANMIAVVRDGAV 1528 (1560)
Q Consensus 1449 ~G~~LSGGQrQRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlsti~~aDrIlVLd~G~I 1528 (1560)
+|.+|||||||||||||||+++|+|||||||||+||.+||+.|+++|++.+++||+|+||||++++++||||+||++|+|
T Consensus 1368 ~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVL~~G~i 1447 (1495)
T PLN03232 1368 GGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQV 1447 (1495)
T ss_pred CCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCHHHHHhhccChHHHHHHHHhhhh
Q 000406 1529 VEYGSHETLLASHLNGVYASLVRAETEA 1556 (1560)
Q Consensus 1529 vE~Gt~~eLl~~~~~g~y~~l~~~q~~~ 1556 (1560)
+|+|+|+||++ +++|.|++|++.+...
T Consensus 1448 vE~Gt~~eLl~-~~~~~f~~l~~~~~~~ 1474 (1495)
T PLN03232 1448 LEYDSPQELLS-RDTSAFFRMVHSTGPA 1474 (1495)
T ss_pred EEECCHHHHHh-CCCCHHHHHHHHhChh
Confidence 99999999998 3467999999988654
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-145 Score=1499.26 Aligned_cols=1169 Identities=20% Similarity=0.250 Sum_probs=861.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 347 VLLGCIGALINGGALPWYSYFFGNFVNKIANESSDPDKTQMMKDAEKICLLMTVLAAIVMMGAYLEITCWRLVGERSAQR 426 (1560)
Q Consensus 347 ~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ 426 (1560)
+++++++.++..++....|+++..+++.+.+... . ... ...+++.++++.++..++.....+....++.++...
T Consensus 319 ~l~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~-~----~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~ 392 (1522)
T TIGR00957 319 FLMSFCFKAIHDLMMFIGPQILSLLIRFVNDPMA-P----DWQ-GYFYTGLLFVCACLQTLILHQYFHICFVSGMRIKTA 392 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-c----cch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555556666788888886643211 0 000 111222222222222222222223345578888889
Q ss_pred HHHHHHHHHHhcCchhhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 427 IRTKYLRAVLRQDIAFFDTEVSTSDIMHGISSDIAQIQEVMGEKVAHFAHNIFTFICGYTVGFLRSWKVSLVVLSVTPLM 506 (1560)
Q Consensus 427 lr~~l~~~ll~~~l~ffd~~~~~G~i~~r~s~Dv~~i~~~l~~~l~~~i~~i~~~i~~~ii~~~~s~~l~lv~l~~~pl~ 506 (1560)
++..+++|+++++...++.. ++|+++|+++.|++++.+... .+..+...++.+++++++++....+.+++.+++++++
T Consensus 393 L~~~iy~K~L~l~~~~~~~~-~~G~i~nl~s~D~~~i~~~~~-~~~~~~~~~~~i~~~~~ll~~~~g~~~l~~l~~~~~~ 470 (1522)
T TIGR00957 393 VMGAVYRKALVITNSARKSS-TVGEIVNLMSVDAQRFMDLAT-YINMIWSAPLQVILALYFLWLNLGPSVLAGVAVMVLM 470 (1522)
T ss_pred HHHHHHHHHHhCChhhcCCC-CHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999655 899999999999999988553 2333333333333333332222222334444555566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHhHhHHHhHHHHHHHHHHHHHHHH
Q 000406 507 MFCGMAYKAVYVGLTSKEEASYRRAGSVAEQAISSIRTVFSFVAEDHFAVRYAGLLADSIPFGAKLGFAKGAGMGVIYLV 586 (1560)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIka~~~e~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ 586 (1560)
+.+..++.+...+..++..+..++..+.+.|.++||++||+|+||+.+.+++.+.++++.+...+..........+....
T Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~ 550 (1522)
T TIGR00957 471 VPLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAVGTFTWVCT 550 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667777788888888888889999999999999999999999999999999999888776666665554433222211
Q ss_pred HHHHHHHHHHHHHHHHh--cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCC
Q 000406 587 TYATWALAFWYGSILVA--RKELSGGAAIACFFGVNVGGRGLALSLSYFAQFAQGTVAATRVFEIIDRVPEIDPYNSEGR 664 (1560)
Q Consensus 587 ~~~~~~~~~~~g~~lv~--~g~ls~g~~~~~l~~~~~~~~~l~~~~~~~~~~~~a~~a~~Ri~~~l~~~~~~~~~~~~~~ 664 (1560)
..+ +..+.++.+++. .+.++++.+++++.++..+..|+..++..+..+.++.++++||.++++.+++. +......
T Consensus 551 ~~~--~~~~~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~-~~~~~~~ 627 (1522)
T TIGR00957 551 PFL--VALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELE-PDSIERR 627 (1522)
T ss_pred HHH--HHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccc-ccccccc
Confidence 111 112234455554 35688999999887777788899999999999999999999999999764331 1110111
Q ss_pred cCC-CCcccEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCcc
Q 000406 665 KLS-SVSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQ 743 (1560)
Q Consensus 665 ~~~-~~~g~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~ 743 (1560)
... ...+.|+++|++|+|+.. +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 628 ~~~~~~~~~i~~~~~~~~~~~~-~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------- 699 (1522)
T TIGR00957 628 TIKPGEGNSITVHNATFTWARD-LPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG------- 699 (1522)
T ss_pred ccCCCCCCcEEEEEeEEEcCCC-CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC-------
Confidence 111 112479999999999743 34699999999999999999999999999999999999999999999997
Q ss_pred HHHHhccEEEEecCCcCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHH
Q 000406 744 VKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALA 823 (1560)
Q Consensus 744 ~~~lr~~i~~v~Q~~~lf~~Tv~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialA 823 (1560)
+|+||+|+||+|++||+|||.+|.+. +.++..++++.+++.+++..+|.|++|.+|++|.+|||||||||+||
T Consensus 700 ------~i~yv~Q~~~l~~~Ti~eNI~~g~~~-~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLA 772 (1522)
T TIGR00957 700 ------SVAYVPQQAWIQNDSLRENILFGKAL-NEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLA 772 (1522)
T ss_pred ------EEEEEcCCccccCCcHHHHhhcCCcc-CHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHH
Confidence 59999999999999999999998753 45566677778888899999999999999999999999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHH---hcCCcEEEEEecCccccccCCEEEEEeCCeEEEecChhhHhhhc
Q 000406 824 RAMIKDPRILLLDEPTSALDSESESIVQQAIDK---ISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLERG 900 (1560)
Q Consensus 824 RAl~~~p~illLDEpts~LD~~~~~~i~~~l~~---~~~~~tvi~itH~l~~i~~~D~i~vl~~G~iv~~G~~~~l~~~~ 900 (1560)
||++++|+|+|||||||+||+++++.+.+.+.+ +.+++|+|+|||+++.+..||+|++|++|++++.|+++++++++
T Consensus 773 RAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~~~ 852 (1522)
T TIGR00957 773 RAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRD 852 (1522)
T ss_pred HHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHhcc
Confidence 999999999999999999999999999988853 45689999999999999999999999999999999999999888
Q ss_pred chHHHHHHHHHhhccCccccch------hccccc---ch--hh---hhhhHHH-hhhhhhhhhh-hh----hhhhhhhH-
Q 000406 901 GAYHDLVKLASEAVSQPQSKQK------DAKRGI---EF--SI---YEKSVIE-VSRSRYANEV-SK----SKYFKSMQ- 959 (1560)
Q Consensus 901 ~~~~~l~~~~~~~~~~~~~~~~------~~~~~~---~~--~~---~~~~~~~-~~~~~~~~~~-~~----~~~~~~~~- 959 (1560)
+.|.++................ ...... +. .. ....... .......... +. ........
T Consensus 853 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 932 (1522)
T TIGR00957 853 GAFAEFLRTYAPDEQQGHLEDSWTALVSGEGKEAKLIENGMLVTDVVGKQLQRQLSASSSDSGDQSRHHGSSAELQKAEA 932 (1522)
T ss_pred hhHHHHHHhhccccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccccccccccccc
Confidence 8888877543211100000000 000000 00 00 0000000 0000000000 00 00000000
Q ss_pred HHhhhhHhhhhCCCCchhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccch-hhhhhHHHHHH
Q 000406 960 AEIQTVEEEQQKPRPRKFQLSEIWKLQRPEFAMIIFGFILGMHAGAILSIFPLILGQALQVYFDDTAS-TLRRDVRYLSL 1038 (1560)
Q Consensus 960 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~ 1038 (1560)
.+......++++...+.+.+..++.|.+......++.+++..+. ...+......++..|.+.... .......++..
T Consensus 933 ~~~~~~~~~~e~~~~g~v~~~~y~~Y~~~~g~~~~~~~~~~~~~---~~~~~~~~~~~l~~w~~~~~~~~~~~~~~~~~~ 1009 (1522)
T TIGR00957 933 KEETWKLMEADKAQTGQVELSVYWDYMKAIGLFITFLSIFLFVC---NHVSALASNYWLSLWTDDPMVNGTQNNTSLRLS 1009 (1522)
T ss_pred ccchhhhHHHHHHhcCcccHHHHHHHHHHcCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhccccccCCCCCcchHHH
Confidence 00000000011111223344555555554332222211111111 111111222233333332110 01111233445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccCChHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 000406 1039 ALVGLGFGCIIFMTGQQGFCGWAGTKLTMRVRELLFRSILKQEPGWFDFEENSTGVLVSRLSIDSISFRSVLGDRFSVLL 1118 (1560)
Q Consensus 1039 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~ll~~~~~ffd~~~~~~G~il~R~s~Di~~i~~~l~~~l~~~l 1118 (1560)
++++++++..++.++..++..+++.++..++|+.++++++++|+.||| ++++|+++|||++|++.++..++..+..++
T Consensus 1010 iy~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~--~~~~G~ilnR~s~Di~~id~~l~~~~~~~~ 1087 (1522)
T TIGR00957 1010 VYGALGILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFE--RTPSGNLVNRFSKELDTVDSMIPPVIKMFM 1087 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHhc--cCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777777777888888899999999999999999999999998 799999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcchhhhhhhHHHHHHHHHHHhcchhHHHhccchHHHH
Q 000406 1119 MGLSSAAVGLGVSLVLNWRLTLVAAALTPFTLGASYLS-LIINVGPKIDNSSYAKASSIASGAVSNIRTVTTFSAQEQII 1197 (1560)
Q Consensus 1119 ~~~~~~i~~l~~~~~~~~~l~lv~l~~ipl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~e~~~~ 1197 (1560)
..++.+++.++++++.+|.++++++++++++++...+. ...+...+......++..+++.|++.|+++||+|++++.+.
T Consensus 1088 ~~~~~~i~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~ 1167 (1522)
T TIGR00957 1088 GSLFNVIGALIVILLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFI 1167 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHH
Confidence 99999998888888888876555444433332222211 11111122234456778899999999999999999999999
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 000406 1198 NSFDKALSEPKKKSVKRSQILGLTLGFSQGAMYVAYTFTLWFGAYLVK-QGHASFGVVYKIFLILVLSSFSVGQLAGLAP 1276 (1560)
Q Consensus 1198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~-~g~~s~g~~~~~~~~~~~~~~~i~~l~~~~~ 1276 (1560)
+++.+..+...+..+.......+.......+. .+++++++...+. .|.++.|.+.+++.+...+..++..+...+.
T Consensus 1168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~ 1244 (1522)
T TIGR00957 1168 HQSDLKVDENQKAYYPSIVANRWLAVRLECVG---NCIVLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSS 1244 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888876654444333333222222 2233344444443 5789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCccccc---cccccCCCCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCC
Q 000406 1277 DTSMAATAIPAVLQITKRKPLIDNV---KGRKLERSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGS 1353 (1560)
Q Consensus 1277 ~~~~~~~s~~ri~~i~~~~~~~~~~---~~~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGS 1353 (1560)
+++.++.+++|+.++.+.+++.+.. ......|+..+.|+|+||+|+|+++ .++||+||||+|+|||+|||||||||
T Consensus 1245 ~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~vL~~is~~I~~GekiaIVGrTGs 1323 (1522)
T TIGR00957 1245 EMETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYRED-LDLVLRHINVTIHGGEKVGIVGRTGA 1323 (1522)
T ss_pred HHHHHHHHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CcccccceeEEEcCCCEEEEECCCCC
Confidence 9999999999999999776553311 1122235556789999999999754 24699999999999999999999999
Q ss_pred CHHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhhceEEEcCCCCCCCccHHHHHhcCCCCCCHHHHHHHHHHHhHHH
Q 000406 1354 GKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHK 1433 (1560)
Q Consensus 1354 GKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~~I~~VpQdp~LF~gTIreNL~~g~~~~sd~eI~~al~~a~l~~ 1433 (1560)
|||||+++|+|+|+|++|+|+|||+||+++++++||++|++|||||+||+||||+||++.. +++|+|+++|++.+++++
T Consensus 1324 GKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~-~~sdeei~~al~~a~l~~ 1402 (1522)
T TIGR00957 1324 GKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFS-QYSDEEVWWALELAHLKT 1402 (1522)
T ss_pred CHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCccc-CCCHHHHHHHHHHcCcHH
Confidence 9999999999999999999999999999999999999999999999999999999999754 689999999999999999
Q ss_pred HHHhCCCCccccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHH
Q 000406 1434 FISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLST 1513 (1560)
Q Consensus 1434 ~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlst 1513 (1560)
+|.++|+||||+|||+|.+|||||||||||||||+++|+|||||||||+||.+||+.|+++|++.+++||+|+||||+++
T Consensus 1403 ~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~t 1482 (1522)
T TIGR00957 1403 FVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNT 1482 (1522)
T ss_pred HHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCEEEEEeCCEEEEecCHHHHHhhccChHHHHHHHHh
Q 000406 1514 IREANMIAVVRDGAVVEYGSHETLLASHLNGVYASLVRAE 1553 (1560)
Q Consensus 1514 i~~aDrIlVLd~G~IvE~Gt~~eLl~~~~~g~y~~l~~~q 1553 (1560)
+.+||||+||++|+|+|+|+|+||++ ++|.|++|+++.
T Consensus 1483 i~~~DrIlVld~G~IvE~G~~~eLl~--~~~~f~~l~~~~ 1520 (1522)
T TIGR00957 1483 IMDYTRVIVLDKGEVAEFGAPSNLLQ--QRGIFYSMAKDA 1520 (1522)
T ss_pred HHhCCEEEEEECCEEEEECCHHHHHh--CCCHHHHHHHHc
Confidence 99999999999999999999999998 479999999874
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-139 Score=1439.91 Aligned_cols=1172 Identities=19% Similarity=0.205 Sum_probs=856.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 344 MILVLLGCIGALINGGALPWYSYFFGNFVNKIANESSDPDKTQMMKDAEKICLLMTVLAAIVMMGAYLEITCWRLVGERS 423 (1560)
Q Consensus 344 ~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~ 423 (1560)
++.+++.+++.++..++....|++++.+++.+.... . . ......+++.+++..++..++.....+.....+.++
T Consensus 243 ~~~~~~~~~~~l~~~~~~l~~P~ll~~~v~~l~~~~--~---~-~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~~~ 316 (1560)
T PTZ00243 243 PYYVWWQIPFKLLSDVCTLTLPVLLKYFVKFLDADN--A---T-WGRGLGLVLTLFLTQLIQSVCLHRFYYISIRCGLQY 316 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--c---c-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555666666666677778888887653211 1 0 111111122222222223333333334445566667
Q ss_pred HHHHHHHHHHHHHhcCchhhcc-CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 424 AQRIRTKYLRAVLRQDIAFFDT-EVSTSDIMHGISSDIAQIQEVMGEKVAHFAHNIFTFICGYTVGFLRSWKVSLVVLSV 502 (1560)
Q Consensus 424 ~~~lr~~l~~~ll~~~l~ffd~-~~~~G~i~~r~s~Dv~~i~~~l~~~l~~~i~~i~~~i~~~ii~~~~s~~l~lv~l~~ 502 (1560)
...|...+|+|+++.+...+.. +.++|+++|+++.|++.+.+++.. +..++...+.++++++++..+..+.+++.+++
T Consensus 317 r~~L~~~if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~~-~~~l~~~Pl~li~~~~lL~~~lG~~al~gv~v 395 (1560)
T PTZ00243 317 RSALNALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQY-CMYLWSSPMVLLLSILLLSRLVGWCALMAVAV 395 (1560)
T ss_pred HHHHHHHHHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 7777778888888888766631 337899999999999999999844 44455556666665666665555667777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHhHhHHHhHHHHHHHHHHHH
Q 000406 503 TPLMMFCGMAYKAVYVGLTSKEEASYRRAGSVAEQAISSIRTVFSFVAEDHFAVRYAGLLADSIPFGAKLGFAKGAGMGV 582 (1560)
Q Consensus 503 ~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIka~~~e~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~ 582 (1560)
+++++.+..++.+.....+++..+..++..+.+.|.++|||+||+++||+.|.+++.+.++++.+...+......+...+
T Consensus 396 l~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~~El~~l~~~~~~~~~~~~~ 475 (1560)
T PTZ00243 396 LLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARELRYLRDVQLARVATSFV 475 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888888888888889999999999999999999999999999999999999999988877777776665554
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCC----C
Q 000406 583 IYLVTYATWALAFWYGSILVARKELSGGAAIACFFGVNVGGRGLALSLSYFAQFAQGTVAATRVFEIIDRVPEID----P 658 (1560)
Q Consensus 583 ~~~~~~~~~~~~~~~g~~lv~~g~ls~g~~~~~l~~~~~~~~~l~~~~~~~~~~~~a~~a~~Ri~~~l~~~~~~~----~ 658 (1560)
......++.++ .++++.+.++.++++.+|+++.++..+..|+..++..+..+.++.+|++||.+|++.++... +
T Consensus 476 ~~~~p~l~~~~--~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI~~fL~~~e~~~~~~~~ 553 (1560)
T PTZ00243 476 NNATPTLMIAV--VFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRISTFLECDNATCSTVQD 553 (1560)
T ss_pred HHHHHHHHHHH--HHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccccc
Confidence 44433333322 34667778899999999999999999999999999999999999999999999997543100 0
Q ss_pred C-C--------CC--C---------------Cc---------------------------CCCCcccEEEEEEEEEcCCC
Q 000406 659 Y-N--------SE--G---------------RK---------------------------LSSVSGKIEFKGVTFAYPSR 685 (1560)
Q Consensus 659 ~-~--------~~--~---------------~~---------------------------~~~~~g~i~~~~vs~~y~~~ 685 (1560)
. + .. . .. .......+.++|+++.++..
T Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (1560)
T PTZ00243 554 MEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHPSPSVVVEDTDYGSPSS 633 (1560)
T ss_pred chhhcccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccccccccccccc
Confidence 0 0 00 0 00 00012357778877765310
Q ss_pred -------------------------------------CCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCC
Q 000406 686 -------------------------------------PETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPT 728 (1560)
Q Consensus 686 -------------------------------------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~ 728 (1560)
.+.++|+|+||+|++|++++|+||||||||||+++|+|+++|+
T Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~ 713 (1560)
T PTZ00243 634 ASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEIS 713 (1560)
T ss_pred cccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCC
Confidence 1245899999999999999999999999999999999999999
Q ss_pred ccEEEECCeecCCccHHHHhccEEEEecCCcCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCC
Q 000406 729 KGLITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDR 808 (1560)
Q Consensus 729 ~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Tv~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~ 808 (1560)
+|+|.++ ++|+||+|+|++|++||+|||.++.+. ..++..++++.++++++++.+|+|++|.+|++
T Consensus 714 ~G~i~~~-------------~~i~yv~Q~~~l~~~Tv~enI~~~~~~-~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~ 779 (1560)
T PTZ00243 714 EGRVWAE-------------RSIAYVPQQAWIMNATVRGNILFFDEE-DAARLADAVRVSQLEADLAQLGGGLETEIGEK 779 (1560)
T ss_pred CcEEEEC-------------CeEEEEeCCCccCCCcHHHHHHcCChh-hHHHHHHHHHHhhhHHHHHHhhccchHHhcCC
Confidence 9999874 469999999999999999999998653 34456667777888999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHH-HHHHhcCCcEEEEEecCccccccCCEEEEEeCCeE
Q 000406 809 GTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQ-AIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSV 887 (1560)
Q Consensus 809 g~~LSgGQrQRialARAl~~~p~illLDEpts~LD~~~~~~i~~-~l~~~~~~~tvi~itH~l~~i~~~D~i~vl~~G~i 887 (1560)
|.+|||||||||+|||||+.+|+|||||||||+||+++++.+.+ ++....+|+|+|+|||+++.+..||+|++|++|++
T Consensus 780 g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~G~i 859 (1560)
T PTZ00243 780 GVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGDGRV 859 (1560)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999998777654 45545568999999999999988999999999999
Q ss_pred EEecChhhHhhhcchHHHHHHHHHhhccCccccchhcccccchhhh--hhhHHHhhhhhhhhhhhhhhhhhhhHHHhhhh
Q 000406 888 VEIGNHRQLLERGGAYHDLVKLASEAVSQPQSKQKDAKRGIEFSIY--EKSVIEVSRSRYANEVSKSKYFKSMQAEIQTV 965 (1560)
Q Consensus 888 v~~G~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 965 (1560)
++.|+++++++. +.|..+......................+.... .........+.................... .
T Consensus 860 ~~~G~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~ 937 (1560)
T PTZ00243 860 EFSGSSADFMRT-SLYATLAAELKENKDSKEGDADAEVAEVDAAPGGAVDHEPPVAKQEGNAEGGDGAALDAAAGRLM-T 937 (1560)
T ss_pred EEecCHHHHHhC-hHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccchhh-h
Confidence 999999999864 456665543211110000000000000000000 000000000000000000000000000000 0
Q ss_pred HhhhhCCCCchhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Q 000406 966 EEEQQKPRPRKFQLSEIWKLQRPEFAMIIFGFILGMHAGAILSIFPLILGQALQVYFDDTASTLRRDVRYLSLALVGLGF 1045 (1560)
Q Consensus 966 ~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 1045 (1560)
+++. ..+.+.+..++.|.+.........+++.++ ++..++......++..|.... .......++.+|+++.+
T Consensus 938 ~e~~---~~g~v~~~~y~~Y~~~~g~~~~~~~~l~~~--~~~~~~~~~~~~wl~~w~~~~---~~~~~~~~l~~y~~~~~ 1009 (1560)
T PTZ00243 938 REEK---ASGSVPWSTYVAYLRFCGGLHAAGFVLATF--AVTELVTVSSGVWLSMWSTRS---FKLSAATYLYVYLGIVL 1009 (1560)
T ss_pred HHHH---hcCcccHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHhcccc---cCCCcccHHHHHHHHHH
Confidence 1111 123344555555555432222111111110 011111111112222222211 11112234445555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccCChHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 1046 GCIIFMTGQQGFCGWAGTKLTMRVRELLFRSILKQEPGWFDFEENSTGVLVSRLSIDSISFRSVLGDRFSVLLMGLSSAA 1125 (1560)
Q Consensus 1046 ~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~ll~~~~~ffd~~~~~~G~il~R~s~Di~~i~~~l~~~l~~~l~~~~~~i 1125 (1560)
+..++..++.+.....+.+...++|+.++++++++|+.||| ++++|+++|||++|++.++..++..+..++..++.++
T Consensus 1010 ~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd--~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i 1087 (1560)
T PTZ00243 1010 LGTFSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFD--TTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSIC 1087 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhcc--CCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555566667788899999999999999999998 7999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----hhhhhhhHHHHHHHHHHHhcchhHHHhccchHHHHHHHH
Q 000406 1126 VGLGVSLVLNWRLTLVAAALTPFTLGASYLSLIINVG----PKIDNSSYAKASSIASGAVSNIRTVTTFSAQEQIINSFD 1201 (1560)
Q Consensus 1126 ~~l~~~~~~~~~l~lv~l~~ipl~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~e~l~gi~tIraf~~e~~~~~~~~ 1201 (1560)
+.++++++.+|.+.+ +++|++++..++...+... .+......++..+++.|++.|+.+||+|+.++.+.++|.
T Consensus 1088 ~~li~~~~~~p~~~~---~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~ 1164 (1560)
T PTZ00243 1088 SSILVTSASQPFVLV---ALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEAL 1164 (1560)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHH
Confidence 888888888874433 3334333332322222222 122234567789999999999999999999999999999
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcCcccHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 000406 1202 KALSEPKKKSVKRSQILGLTLGFSQGAMYVAYTFTLWFGAYL--VKQGHASFGVVYKIFLILVLSSFSVGQLAGLAPDTS 1279 (1560)
Q Consensus 1202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l--v~~g~~s~g~~~~~~~~~~~~~~~i~~l~~~~~~~~ 1279 (1560)
+.++...+..+.......+......++..+..+++.+++... ...+.+++|.+..++.+...+..++..+...+.+++
T Consensus 1165 ~~~d~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le 1244 (1560)
T PTZ00243 1165 RRLDVVYSCSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVE 1244 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998887776555444444444444444333333444433 334557788877777888888889999999999999
Q ss_pred HHHHHHHHHHHHhccCCccccc--------------------------cc-cc---cCCCCCccEEEEEEEEEcCCCCCc
Q 000406 1280 MAATAIPAVLQITKRKPLIDNV--------------------------KG-RK---LERSKPLGIELKMVTFTYPSRPEV 1329 (1560)
Q Consensus 1280 ~~~~s~~ri~~i~~~~~~~~~~--------------------------~~-~~---~~~~~~~~I~~~nVsf~Y~~~~~~ 1329 (1560)
.++.+++|+.++.+..++++.. .. .. +.++..+.|+|+||+|+|+++ .+
T Consensus 1245 ~~~~s~eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~-~~ 1323 (1560)
T PTZ00243 1245 ADMNSVERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREG-LP 1323 (1560)
T ss_pred HHHHHHHHHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCC-CC
Confidence 9999999999998643322100 00 00 112234679999999999754 35
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhhceEEEcCCCCCCCccHHHH
Q 000406 1330 TVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDN 1409 (1560)
Q Consensus 1330 ~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~~I~~VpQdp~LF~gTIreN 1409 (1560)
+||+||||+|+|||+||||||||||||||+++|+|+|+|++|+|+|||+||+++++++||++|++|||||+||+||||+|
T Consensus 1324 ~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreN 1403 (1560)
T PTZ00243 1324 LVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQN 1403 (1560)
T ss_pred ceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHccC-CCEEEEeCCCcCCCHHHH
Q 000406 1410 IALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKG-SRVLLLDEASSALDLESE 1488 (1560)
Q Consensus 1410 L~~g~~~~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLARALLr~-p~ILILDEaTSaLD~~Te 1488 (1560)
|+++. +++|+||++||+.++++++|.++|+||||.|||+|.+||||||||||||||||++ |+|||||||||+||++||
T Consensus 1404 Idp~~-~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te 1482 (1560)
T PTZ00243 1404 VDPFL-EASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALD 1482 (1560)
T ss_pred hCccc-CCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHH
Confidence 99864 7899999999999999999999999999999999999999999999999999996 899999999999999999
Q ss_pred HHHHHHHHHhcCCceEEEEecChHHHhhcCEEEEEeCCEEEEecCHHHHHhhccChHHHHHHHHhhhh
Q 000406 1489 KHVQDALRKVSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETLLASHLNGVYASLVRAETEA 1556 (1560)
Q Consensus 1489 ~~I~~~L~~~~~~~TvI~IAHRlsti~~aDrIlVLd~G~IvE~Gt~~eLl~~~~~g~y~~l~~~q~~~ 1556 (1560)
+.|+++|++.+++||+|+||||++++.+||+|+||++|+|+|+|+|+||++ +++|.|++|++.++..
T Consensus 1483 ~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~-~~~~~f~~l~~~~~~~ 1549 (1560)
T PTZ00243 1483 RQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVM-NRQSIFHSMVEALGRS 1549 (1560)
T ss_pred HHHHHHHHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHh-CCCCHHHHHHHHhChh
Confidence 999999999999999999999999999999999999999999999999997 3589999999988643
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-137 Score=1418.96 Aligned_cols=1157 Identities=17% Similarity=0.203 Sum_probs=836.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 354 ALINGGALPWYSYFFGNFVNKIANESSDPDKTQMMKDAEKICLLMTVLAAIVMMGAYLEITCWRLVGERSAQRIRTKYLR 433 (1560)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~lr~~l~~ 433 (1560)
.++..++....|+++..+++.+.... .. . ......+++.++++.++..++.....+....++.++...+...+++
T Consensus 89 ~~~~~~~~~~~P~ll~~li~~~~~~~-~~--~--~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~L~~~iy~ 163 (1490)
T TIGR01271 89 LYFGEATKAVQPLLLGRIIASYDPFN-AP--E--REIAYYLALGLCLLFIVRTLLLHPAIFGLHHLGMQMRIALFSLIYK 163 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCC-CC--c--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555668888888763211 00 0 0011112222223333333333333444455666666677777799
Q ss_pred HHHhcCchhhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 434 AVLRQDIAFFDTEVSTSDIMHGISSDIAQIQEVMGEKVAHFAHNIFTFICGYTVGFLRSWKVSLVVLSVTPLMMFCGMAY 513 (1560)
Q Consensus 434 ~ll~~~l~ffd~~~~~G~i~~r~s~Dv~~i~~~l~~~l~~~i~~i~~~i~~~ii~~~~s~~l~lv~l~~~pl~~~~~~~~ 513 (1560)
|+++++...++.. ++|+++|++++|++.|.+.+... ..+....+.+++++++++....+.+++.++++++++++..++
T Consensus 164 K~L~l~~~~~~~~-~~g~i~nl~s~Dv~~i~~~~~~~-~~~~~~pi~i~~~~~lL~~~~G~~~l~~l~v~~~~~~~~~~~ 241 (1490)
T TIGR01271 164 KTLKLSSRVLDKI-STGQLVSLLSNNLNKFDEGLALA-HFVWIAPLQVILLMGLIWELLEVNGFCGLGFLILLALFQACL 241 (1490)
T ss_pred HHHhCCHHHhcCC-CHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988644 89999999999999999977643 233344444455555555555556677777788888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHhHhHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 514 KAVYVGLTSKEEASYRRAGSVAEQAISSIRTVFSFVAEDHFAVRYAGLLADSIPFGAKLGFAKGAGMGVIYLVTYATWAL 593 (1560)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIka~~~e~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~ 593 (1560)
.+...+.+++.....+++.+.+.|.++||++||+|+||+.+.+++.+.++.+.+...+..........+..+... .+.
T Consensus 242 ~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~~--~~~ 319 (1490)
T TIGR01271 242 GQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLRYFYSSAFFFSGF--FVV 319 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH
Confidence 888889999999999999999999999999999999999999999999999888777777665444333332222 233
Q ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCcCCCCccc
Q 000406 594 AFWYGSILVARKELSGGAAIACFFGVNVGGRGLA-LSLSYFAQFAQGTVAATRVFEIIDRVPEIDPYNSEGRKLSSVSGK 672 (1560)
Q Consensus 594 ~~~~g~~lv~~g~ls~g~~~~~l~~~~~~~~~l~-~~~~~~~~~~~a~~a~~Ri~~~l~~~~~~~~~~~~~~~~~~~~g~ 672 (1560)
++.++.+.+.++ ++++.+|+++.++.....++. .++..+..+.++.++++||.+|+..++. ++.. . ......
T Consensus 320 ~~~f~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~-~~~~---~--~~~~~~ 392 (1490)
T TIGR01271 320 FLSVVPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEY-KTLE---Y--NLTTTE 392 (1490)
T ss_pred HHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-cccc---c--cCCCCc
Confidence 445566665544 678888988877777766764 5777889999999999999999975332 1111 0 112235
Q ss_pred EEEEEEEEEcCCCC-------------------------------CccccccceeEecCCCEEEEecCCCCChHHHHHHH
Q 000406 673 IEFKGVTFAYPSRP-------------------------------ETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALI 721 (1560)
Q Consensus 673 i~~~~vs~~y~~~~-------------------------------~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll 721 (1560)
|+++|++|.|+... ..++|+|+||+|++|++++|+||||||||||+++|
T Consensus 393 i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l 472 (1490)
T TIGR01271 393 VEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMI 472 (1490)
T ss_pred eEEecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHH
Confidence 99999999995310 13589999999999999999999999999999999
Q ss_pred hcCCCCCccEEEECCeecCCccHHHHhccEEEEecCCcCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHHHHHhCCCCC
Q 000406 722 ERFYDPTKGLITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGY 801 (1560)
Q Consensus 722 ~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Tv~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~gl 801 (1560)
+|+++|++|+|.++| +|+||+|+||+|++||+|||.||.+. ..++..++++.+++.+++..+|.|+
T Consensus 473 ~G~~~~~~G~i~~~g-------------~iayv~Q~~~l~~~Ti~eNI~~g~~~-~~~~~~~~~~~~~L~~~l~~l~~g~ 538 (1490)
T TIGR01271 473 MGELEPSEGKIKHSG-------------RISFSPQTSWIMPGTIKDNIIFGLSY-DEYRYTSVIKACQLEEDIALFPEKD 538 (1490)
T ss_pred hCCCCCCCceEEECC-------------EEEEEeCCCccCCccHHHHHHhcccc-chHHHHHHHHHHhHHHHHHhccccc
Confidence 999999999999998 49999999999999999999998653 3344555666778889999999999
Q ss_pred CcccCCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHH-HHHHhcCCcEEEEEecCccccccCCEEE
Q 000406 802 DTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQ-AIDKISVGRTTIVIAHRLATVKNANTIV 880 (1560)
Q Consensus 802 ~t~~~~~g~~LSgGQrQRialARAl~~~p~illLDEpts~LD~~~~~~i~~-~l~~~~~~~tvi~itH~l~~i~~~D~i~ 880 (1560)
+|.+|++|.+|||||||||+||||++++|+|||||||||+||+++++.+.+ ++.++.+++|+|+|||+++.+..||+|+
T Consensus 539 ~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii 618 (1490)
T TIGR01271 539 KTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKIL 618 (1490)
T ss_pred cccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEE
Confidence 999999999999999999999999999999999999999999999999987 5677777999999999999998899999
Q ss_pred EEeCCeEEEecChhhHhhhcchHHHHHHHHHhhc--------------------c--C-----ccccchh-cccccc--h
Q 000406 881 VLDQGSVVEIGNHRQLLERGGAYHDLVKLASEAV--------------------S--Q-----PQSKQKD-AKRGIE--F 930 (1560)
Q Consensus 881 vl~~G~iv~~G~~~~l~~~~~~~~~l~~~~~~~~--------------------~--~-----~~~~~~~-~~~~~~--~ 930 (1560)
+|++|++++.|+++++.+.++.|...+....... . . +...... ..+..+ .
T Consensus 619 ~l~~g~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 698 (1490)
T TIGR01271 619 LLHEGVCYFYGTFSELQAKRPDFSSLLLGLEAFDNFSAERRNSILTETLRRVSIDGDSTVFSGPETIKQSFKQPPPEFAE 698 (1490)
T ss_pred EEECCEEEEEcCHHHHHhcChHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999876666655542100000 0 0 0000000 000000 0
Q ss_pred -----------------------------hhhhhhHHHhh----------------hhhhh------------hh-----
Q 000406 931 -----------------------------SIYEKSVIEVS----------------RSRYA------------NE----- 948 (1560)
Q Consensus 931 -----------------------------~~~~~~~~~~~----------------~~~~~------------~~----- 948 (1560)
...+....+.. ..... ..
T Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 778 (1490)
T TIGR01271 699 KRKQSIILNPIASARKFSFVQMGPQKAQATTIEDAVREPSERKFSLVPEDEQGEESLPRGNQYHHGLQHQAQRRQSVLQL 778 (1490)
T ss_pred cccccccccccccccccccccccccccccccccchhcccccccccccccccccccccccccccccccccccccccchhhc
Confidence 00000000000 00000 00
Q ss_pred -hhh------h-h---hh-------------hh------h-H------------HHh-hhhHhhhhCCCCchhhHHHHHH
Q 000406 949 -VSK------S-K---YF-------------KS------M-Q------------AEI-QTVEEEQQKPRPRKFQLSEIWK 984 (1560)
Q Consensus 949 -~~~------~-~---~~-------------~~------~-~------------~~~-~~~~~~~~~~~~~~~~~~~l~~ 984 (1560)
... . . .. .. . . ++. ...-.++++...+.+.++.+++
T Consensus 779 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vY~~ 858 (1490)
T TIGR01271 779 MTHSNRGENRREQLQTSFRKKSSITQQNELASELDIYSRRLSKDSVYEISEEINEEDLKECFADERENVFETTTWNTYLR 858 (1490)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhHHHHhhcCcccHHHHHH
Confidence 000 0 0 00 00 0 0 000 0000001111223345556666
Q ss_pred hhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc------c-h-h-----------hhhhHHHHHHHHHHHH
Q 000406 985 LQRPEFAMII-FGFILGMHAGAILSIFPLILGQALQVYFDDT------A-S-T-----------LRRDVRYLSLALVGLG 1044 (1560)
Q Consensus 985 ~~~~~~~~l~-~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~------~-~-~-----------~~~~~~~~~~~~~~l~ 1044 (1560)
|.+...+... +.+++.++.. .+...+...|+..|+... . . . .....+++..++++++
T Consensus 859 Y~~~~g~~~~~~~~~~~~~~~---~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 935 (1490)
T TIGR01271 859 YITTNRNLVFVLIFCLVIFLA---EVAASLLGLWLITDNPSAPNYVDQQHANASSPDVQKPVIITPTSAYYIFYIYVGTA 935 (1490)
T ss_pred HHHhcCcHHHHHHHHHHHHHH---HHHHHHhhHHHHhcccccccccccccccCCCccccccccccCcchhhHHHHHHHHH
Confidence 6654322111 1111111111 111111122222232210 0 0 0 0011122234444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccCChHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 000406 1045 FGCIIFMTGQQGFCGWAGTKLTMRVRELLFRSILKQEPGWFDFEENSTGVLVSRLSIDSISFRSVLGDRFSVLLMGLSSA 1124 (1560)
Q Consensus 1045 ~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~ll~~~~~ffd~~~~~~G~il~R~s~Di~~i~~~l~~~l~~~l~~~~~~ 1124 (1560)
++..++.+++.++....+.++..++|..++++++++|+.||+ ++++|+++|||++|++.++..++..+..++..++.+
T Consensus 936 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~--~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~ 1013 (1490)
T TIGR01271 936 DSVLALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLN--TMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIV 1013 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566677778888899999999999999999999999997 799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cchhhhhhhHHHHHHHHHHHhcchhHHHhccchHHHHHHH
Q 000406 1125 AVGLGVSLVLNWRLTLVAAALTPFTLGASYLSLIIN----VGPKIDNSSYAKASSIASGAVSNIRTVTTFSAQEQIINSF 1200 (1560)
Q Consensus 1125 i~~l~~~~~~~~~l~lv~l~~ipl~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~e~~~~~~~ 1200 (1560)
++.++++++++|.+++++ +|+++++.++...+. ...+......++..+++.|++.|+.+||+|++++.+.+++
T Consensus 1014 i~~l~~i~~~~p~l~l~~---~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~ 1090 (1490)
T TIGR01271 1014 LGAIFVVSVLQPYIFIAA---IPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLF 1090 (1490)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHH
Confidence 999998888888765543 333332222222221 1122234456778999999999999999999999999999
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 000406 1201 DKALSEPKKKSVKRSQILGLTLGFSQGAMYVAYT--FTLWFGAYLVKQGHASFGVVYKIFLILVLSSFSVGQLAGLAPDT 1278 (1560)
Q Consensus 1201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~i~~l~~~~~~~ 1278 (1560)
.+..+...+..+.......+......++..+..+ +.++++.. .++.|.+..++.+...+..++..+...+.++
T Consensus 1091 ~~~~~~~~~~~~~~~~~~~wl~~~~~~i~~~~~~~~~~l~~~~~-----~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~l 1165 (1490)
T TIGR01271 1091 HKALNLHTANWFLYLSTLRWFQMRIDIIFVFFFIAVTFIAIGTN-----QDGEGEVGIILTLAMNILSTLQWAVNSSIDV 1165 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999876655443333222222222221111111 11222222 2333444444455555666777888888899
Q ss_pred HHHHHHHHHHHHHhccCCccccc-c----------------ccccCCCCCccEEEEEEEEEcCCCCCccceeeeeEEEeC
Q 000406 1279 SMAATAIPAVLQITKRKPLIDNV-K----------------GRKLERSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKG 1341 (1560)
Q Consensus 1279 ~~~~~s~~ri~~i~~~~~~~~~~-~----------------~~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~ 1341 (1560)
+..+.+++|+.++.+.+++.... . ..+..|+..+.|+|+||+|+|++. .++||+||||+|+|
T Consensus 1166 e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~-~~~vL~~is~~I~~ 1244 (1490)
T TIGR01271 1166 DGLMRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEA-GRAVLQDLSFSVEG 1244 (1490)
T ss_pred HHHHHHHHHHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCC-CcceeeccEEEEcC
Confidence 99999999999998766553211 0 011235556789999999999753 46799999999999
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhhceEEEcCCCCCCCccHHHHHhcCCCCCCHHH
Q 000406 1342 GSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKASWAE 1421 (1560)
Q Consensus 1342 GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~~I~~VpQdp~LF~gTIreNL~~g~~~~sd~e 1421 (1560)
||+||||||||||||||+++|+|+++ .+|+|+|||+|+++++++.+|++|++|||||+||+||||+||+++. ..+|++
T Consensus 1245 GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~-~~tdee 1322 (1490)
T TIGR01271 1245 GQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYE-QWSDEE 1322 (1490)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCccc-CCCHHH
Confidence 99999999999999999999999997 7999999999999999999999999999999999999999999864 679999
Q ss_pred HHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCC
Q 000406 1422 IEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKR 1501 (1560)
Q Consensus 1422 I~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~~ 1501 (1560)
+|+||+.++++++|.++|+||||+|+|+|.+||||||||||||||||++|+|||||||||+||.+||+.|++.|++.+++
T Consensus 1323 i~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~ 1402 (1490)
T TIGR01271 1323 IWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSN 1402 (1490)
T ss_pred HHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEecChHHHhhcCEEEEEeCCEEEEecCHHHHHhhccChHHHHHHHHhhhhcc
Q 000406 1502 ATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETLLASHLNGVYASLVRAETEANA 1558 (1560)
Q Consensus 1502 ~TvI~IAHRlsti~~aDrIlVLd~G~IvE~Gt~~eLl~~~~~g~y~~l~~~q~~~~~ 1558 (1560)
||||+||||++++.+||||+||++|+|+|+|+|++|++ +++.|++|++++.+.+.
T Consensus 1403 ~TvI~IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~--~~~~f~~l~~~~~~~~~ 1457 (1490)
T TIGR01271 1403 CTVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLN--ETSLFKQAMSAADRLKL 1457 (1490)
T ss_pred CEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHHc--CCcHHHHHHHHhChhcc
Confidence 99999999999999999999999999999999999997 58999999998876554
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-101 Score=936.43 Aligned_cols=573 Identities=38% Similarity=0.576 Sum_probs=533.2
Q ss_pred hhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 977 FQLSEIWKLQRPEFAMIIFGFILGMHAGAILSIFPLILGQALQVYFDDTASTLRRDVRYLSLALVGLGFGCIIFMTGQQG 1056 (1560)
Q Consensus 977 ~~~~~l~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 1056 (1560)
..+++++.+.++.++++..++++.++......+.|.+++.+++.+...... .....-....+.++.++..++..++.+
T Consensus 133 ~~~~rl~~l~~~~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~~--~~~~~~~~~~l~~l~~~~a~~~~~r~~ 210 (716)
T KOG0058|consen 133 TLLKRLLGLLKPEWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDDS--ADALKRACTILLGLFLIGALANAIRGG 210 (716)
T ss_pred hHHHHHHHHhchhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccch--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356789999999999999999999998888899999999999988762111 223334556667777788889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccCChHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 1057 FCGWAGTKLTMRVRELLFRSILKQEPGWFDFEENSTGVLVSRLSIDSISFRSVLGDRFSVLLMGLSSAAVGLGVSLVLNW 1136 (1560)
Q Consensus 1057 ~~~~~~~~~~~~Lr~~l~~~ll~~~~~ffd~~~~~~G~il~R~s~Di~~i~~~l~~~l~~~l~~~~~~i~~l~~~~~~~~ 1136 (1560)
.+.++++++..++|..+|++++++.++||| ++.+|++++|++.|+..+.+.++..+...+.+++..++++++|++++|
T Consensus 211 ~~~~a~~rv~~rlR~~lF~sil~QdiaFFD--~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~ 288 (716)
T KOG0058|consen 211 LLQYAGERVVARLRTDLFRSLLRQDIAFFD--ENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSW 288 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhc--cCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhH
Confidence 999999999999999999999999999999 689999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-chhhhhhhHHHHHHHHHHHhcchhHHHhccchHHHHHHHHHHHhhhHHHHHHHH
Q 000406 1137 RLTLVAAALTPFTLGASYLSLIINV-GPKIDNSSYAKASSIASGAVSNIRTVTTFSAQEQIINSFDKALSEPKKKSVKRS 1215 (1560)
Q Consensus 1137 ~l~lv~l~~ipl~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~ 1215 (1560)
.|+++.++.+|+++++..++..+.+ ..+..+.+.++++....|.+.+++|+|+|++|+...++|.+.+++..+...+..
T Consensus 289 ~Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a 368 (716)
T KOG0058|consen 289 RLTLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEA 368 (716)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988877665555444 444448889999999999999999999999999999999999999999999989
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccC
Q 000406 1216 QILGLTLGFSQGAMYVAYTFTLWFGAYLVKQGHASFGVVYKIFLILVLSSFSVGQLAGLAPDTSMAATAIPAVLQITKRK 1295 (1560)
Q Consensus 1216 ~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~s~~ri~~i~~~~ 1295 (1560)
...+.++....+..++..+.++++|++++..|+++.|.+..++++......++..+..++.+..++..+.+|++++++++
T Consensus 369 ~a~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~ 448 (716)
T KOG0058|consen 369 VAYGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRK 448 (716)
T ss_pred HHhhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccccccCCCCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEE
Q 000406 1296 PLIDNVKGRKLERSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMI 1375 (1560)
Q Consensus 1296 ~~~~~~~~~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~I 1375 (1560)
|..+.. +...+..-.+.|+|+||+|+||.+|+.+||+|+||+|+|||+||+||||||||||++++|.|||+|++|+|++
T Consensus 449 P~i~~~-G~~~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~Ill 527 (716)
T KOG0058|consen 449 PRIPLT-GTLAPDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILL 527 (716)
T ss_pred CCCCCC-CccccccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEE
Confidence 987665 4333323467899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEecCCCCHHHHhhceEEEcCCCCCCCccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCCh
Q 000406 1376 EGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSG 1455 (1560)
Q Consensus 1376 dGvdi~~i~l~~LR~~I~~VpQdp~LF~gTIreNL~~g~~~~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSG 1455 (1560)
||+||++++.++||++||+|.|||.||+|||+|||.||.+.+++|||.+|++.|++|+||.++|+||||.|||+|.+|||
T Consensus 528 DG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSG 607 (716)
T KOG0058|consen 528 DGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSG 607 (716)
T ss_pred CCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHHHhhcCEEEEEeCCEEEEecCHH
Q 000406 1456 GQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHE 1535 (1560)
Q Consensus 1456 GQrQRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlsti~~aDrIlVLd~G~IvE~Gt~~ 1535 (1560)
||||||||||||+|||+|||||||||+||+++|..||++|.+..+++|||+|||||+||+.||+|+|+++|+|+|.|+|+
T Consensus 608 GQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h~ 687 (716)
T KOG0058|consen 608 GQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHD 687 (716)
T ss_pred hHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccChHHHHHHHHhhh
Q 000406 1536 TLLASHLNGVYASLVRAETE 1555 (1560)
Q Consensus 1536 eLl~~~~~g~y~~l~~~q~~ 1555 (1560)
||++ +.+|.|++|+++|..
T Consensus 688 eLl~-~~~gly~~Lv~~q~~ 706 (716)
T KOG0058|consen 688 ELLS-KPNGLYAKLVQRQLD 706 (716)
T ss_pred HHhh-CcccHHHHHHHHhcc
Confidence 9999 467999999999854
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-98 Score=908.37 Aligned_cols=572 Identities=38% Similarity=0.608 Sum_probs=537.2
Q ss_pred cHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 000406 331 GLFSLFKYSTKLDMILVLLGCIGALINGGALPWYSYFFGNFVNKIANESSDPDKTQMMKDAEKICLLMTVLAAIVMMGAY 410 (1560)
Q Consensus 331 ~~~~l~~y~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 410 (1560)
..++++.|..+ .|+++..++++.++......+.|+++|+++|.+.... + ....+...+.++.++.++..++.+
T Consensus 134 ~~~rl~~l~~~-~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~---~---~~~~~~~~~~~l~~l~~~~a~~~~ 206 (716)
T KOG0058|consen 134 LLKRLLGLLKP-EWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGD---D---SADALKRACTILLGLFLIGALANA 206 (716)
T ss_pred HHHHHHHHhch-hHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhcc---c---hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789998765 5666777888888888888888999999999987611 1 123444567778888888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 411 LEITCWRLVGERSAQRIRTKYLRAVLRQDIAFFDTEVSTSDIMHGISSDIAQIQEVMGEKVAHFAHNIFTFICGYTVGFL 490 (1560)
Q Consensus 411 l~~~~~~~~~~~~~~~lr~~l~~~ll~~~l~ffd~~~~~G~i~~r~s~Dv~~i~~~l~~~l~~~i~~i~~~i~~~ii~~~ 490 (1560)
++.+|+.+.++++..+||.++|++++++++.|||.+ .+|++++|++.|++.+.+.++..+...+.+++..++++++|++
T Consensus 207 ~r~~~~~~a~~rv~~rlR~~lF~sil~QdiaFFD~n-ktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~ 285 (716)
T KOG0058|consen 207 IRGGLLQYAGERVVARLRTDLFRSLLRQDIAFFDEN-KTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFS 285 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccC-CccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhh
Confidence 999999999999999999999999999999999977 8999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHhHhHHHh
Q 000406 491 RSWKVSLVVLSVTPLMMFCGMAYKAVYVGLTSKEEASYRRAGSVAEQAISSIRTVFSFVAEDHFAVRYAGLLADSIPFGA 570 (1560)
Q Consensus 491 ~s~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIka~~~e~~~~~~~~~~~~~~~~~~~ 570 (1560)
+||.|+++.++.+|+++++.++|.+..+++.++.+...++++....|.+.+|||||+|+.|+.+.+||.+..++..+...
T Consensus 286 ~S~~Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~ 365 (716)
T KOG0058|consen 286 LSWRLTLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSK 365 (716)
T ss_pred hhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 571 KLGFAKGAGMGVIYLVTYATWALAFWYGSILVARKELSGGAAIACFFGVNVGGRGLALSLSYFAQFAQGTVAATRVFEII 650 (1560)
Q Consensus 571 k~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~ls~g~~~~~l~~~~~~~~~l~~~~~~~~~~~~a~~a~~Ri~~~l 650 (1560)
|.+...+...+...++.++....++|+|++++..|.++.|.+.+++++......++..+...+..++++.+|.+|+++++
T Consensus 366 k~a~a~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~ 445 (716)
T KOG0058|consen 366 KEAVAYGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELM 445 (716)
T ss_pred HHHHHhhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCcCC-CCcccEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCc
Q 000406 651 DRVPEIDPYNSEGRKLS-SVSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTK 729 (1560)
Q Consensus 651 ~~~~~~~~~~~~~~~~~-~~~g~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~ 729 (1560)
|++|..++. +...| ...|.|+|+||+|+||.+++.+||+|+||+|+|||+|||||||||||||++++|.++|+|++
T Consensus 446 dr~P~i~~~---G~~~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~Pts 522 (716)
T KOG0058|consen 446 DRKPRIPLT---GTLAPDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTS 522 (716)
T ss_pred ccCCCCCCC---CccccccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCC
Confidence 999987653 32222 57899999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEECCeecCCccHHHHhccEEEEecCCcCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCC
Q 000406 730 GLITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRG 809 (1560)
Q Consensus 730 G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Tv~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g 809 (1560)
|+|++||+||+++++.++|++||+|.|||.||++||+|||.||.++.+++++..|++++++|+||..+|+||+|.+||+|
T Consensus 523 G~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG 602 (716)
T KOG0058|consen 523 GRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKG 602 (716)
T ss_pred CeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCccccccCCEEEEEeCCeEEE
Q 000406 810 TQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVE 889 (1560)
Q Consensus 810 ~~LSgGQrQRialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~D~i~vl~~G~iv~ 889 (1560)
.+|||||||||||||||++||.||||||+|||||+++|..|+++|.+..+++|||+|+|||+++++||+|+|+++|+|+|
T Consensus 603 ~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E 682 (716)
T KOG0058|consen 603 SQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVE 682 (716)
T ss_pred ccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecChhhHhhhc-chHHHHHHHHHhh
Q 000406 890 IGNHRQLLERG-GAYHDLVKLASEA 913 (1560)
Q Consensus 890 ~G~~~~l~~~~-~~~~~l~~~~~~~ 913 (1560)
.|+|+||+++. |.|+++++.+...
T Consensus 683 ~G~h~eLl~~~~gly~~Lv~~q~~~ 707 (716)
T KOG0058|consen 683 MGTHDELLSKPNGLYAKLVQRQLDS 707 (716)
T ss_pred cccHHHHhhCcccHHHHHHHHhccc
Confidence 99999999976 8999999876543
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-96 Score=932.61 Aligned_cols=578 Identities=40% Similarity=0.721 Sum_probs=548.7
Q ss_pred CcccHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHHHHHH
Q 000406 328 KPVGLFSLFKYSTKLDMILVLLGCIGALINGGALPWYSYFFGNFVNKIANESSDPDKTQMMKDAEKICLLMTVLAAIVMM 407 (1560)
Q Consensus 328 ~~~~~~~l~~y~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 407 (1560)
.+.++++++++.++ .|+.++++++++++.|+..|+++++++++++.+..... ..+......|++++++++++.++
T Consensus 648 ~~~s~~~i~k~~~p-e~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~----~~~~~~~~~~al~f~~l~~~~~i 722 (1228)
T KOG0055|consen 648 EKVSFWRIFKLNKP-EWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDD----DELKREVRAWALIFLGLGIVSGI 722 (1228)
T ss_pred ccccHHHHHHhccc-hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCh----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999998876 88899999999999999999999999999999874331 23334444599999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 408 GAYLEITCWRLVGERSAQRIRTKYLRAVLRQDIAFFDTEVSTSDIMHGISSDIAQIQEVMGEKVAHFAHNIFTFICGYTV 487 (1560)
Q Consensus 408 ~~~l~~~~~~~~~~~~~~~lr~~l~~~ll~~~l~ffd~~~~~G~i~~r~s~Dv~~i~~~l~~~l~~~i~~i~~~i~~~ii 487 (1560)
+.+++.+++.+.++++..++|..+|++++++++.|||...++|.+.+|+++|...++..+...+..+++++..+++++++
T Consensus 723 ~~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~nsg~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iii 802 (1228)
T KOG0055|consen 723 TNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENSGALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIII 802 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999996554599999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHhHhH
Q 000406 488 GFLRSWKVSLVVLSVTPLMMFCGMAYKAVYVGLTSKEEASYRRAGSVAEQAISSIRTVFSFVAEDHFAVRYAGLLADSIP 567 (1560)
Q Consensus 488 ~~~~s~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIka~~~e~~~~~~~~~~~~~~~~ 567 (1560)
+|+++|+++++++++.|++++....+.+.+.....+......+...++.|+++|||||++|+.|+++.+.|.+.++...+
T Consensus 803 af~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~ 882 (1228)
T KOG0055|consen 803 AFIYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRK 882 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 568 FGAKLGFAKGAGMGVIYLVTYATWALAFWYGSILVARKELSGGAAIACFFGVNVGGRGLALSLSYFAQFAQGTVAATRVF 647 (1560)
Q Consensus 568 ~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~ls~g~~~~~l~~~~~~~~~l~~~~~~~~~~~~a~~a~~Ri~ 647 (1560)
...+.+.+.++..++.+.+.++.+++.+|+|.+++.+|.+++..++.+++.+......++...++++++.++..|+.+++
T Consensus 883 ~~~~~~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF 962 (1228)
T KOG0055|consen 883 SSFKRGLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIF 962 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999888888899999999999999999999999
Q ss_pred HHHccCCCCCCCCCCCCcCCCCcccEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCC
Q 000406 648 EIIDRVPEIDPYNSEGRKLSSVSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDP 727 (1560)
Q Consensus 648 ~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~ 727 (1560)
++++++|+++++++.+...++.+|+|+++||+|+||++|+.+||+|+||+|++||++||||||||||||++.+|.|+|+|
T Consensus 963 ~i~dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp 1042 (1228)
T KOG0055|consen 963 EILDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDP 1042 (1228)
T ss_pred HHhcCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 99999887776554444456678999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEECCeecCCccHHHHhccEEEEecCCcCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHHHHHhCCCCCCcccCC
Q 000406 728 TKGLITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGD 807 (1560)
Q Consensus 728 ~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Tv~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~ 807 (1560)
++|.|.|||.|++++++++||++||.|.|||.||++||||||+||.+..+.+|+.+||+.+++|+||.+||+||||.+||
T Consensus 1043 ~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGe 1122 (1228)
T KOG0055|consen 1043 DAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGE 1122 (1228)
T ss_pred CCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCc
Confidence 99999999999999999999999999999999999999999999965689999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCccccccCCEEEEEeCCeE
Q 000406 808 RGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSV 887 (1560)
Q Consensus 808 ~g~~LSgGQrQRialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~D~i~vl~~G~i 887 (1560)
+|.+||||||||||||||++|||+||||||+|||||.++|+.||++|++...|||+|+|+|||+++++||.|+|+++|+|
T Consensus 1123 rG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~V 1202 (1228)
T KOG0055|consen 1123 RGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNGKV 1202 (1228)
T ss_pred ccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecChhhHhhhcchHHHHHHHH
Q 000406 888 VEIGNHRQLLERGGAYHDLVKLA 910 (1560)
Q Consensus 888 v~~G~~~~l~~~~~~~~~l~~~~ 910 (1560)
+|+|+|++|++++|.|.+|++.+
T Consensus 1203 vE~GtH~~L~~~~G~Y~~Lv~~q 1225 (1228)
T KOG0055|consen 1203 VEQGTHDELLAKRGIYFRLVQLQ 1225 (1228)
T ss_pred EecccHHHHHhCCCchHHHhhhc
Confidence 99999999999999999998765
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-90 Score=872.77 Aligned_cols=567 Identities=31% Similarity=0.463 Sum_probs=518.5
Q ss_pred hHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 978 QLSEIWKLQRPEFAMIIFGFILGMHAGAILSIFPLILGQALQVYFDDTASTLRRDVRYLSLALVGLGFGCIIFMTGQQGF 1057 (1560)
Q Consensus 978 ~~~~l~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 1057 (1560)
.+.+++....+++..+...++.+++...+..+.|++...+++...-. ........+.+.++.+.+...++.+++.++
T Consensus 141 ~~~~f~~~~~~~~~~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~---~~~~tL~vl~ig~~~~~l~~~~l~~lr~~~ 217 (709)
T COG2274 141 GLSWFIPLLFKYRRLLFEVLLASLLLQLLALATPLFSQIVIDKVLPD---ASRSTLTVLAIGLLLAALFEALLRLLRTYL 217 (709)
T ss_pred chHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc---CchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777777777777777777777888777777765532 223345566677777788888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCcccccCChHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 1058 CGWAGTKLTMRVRELLFRSILKQEPGWFDFEENSTGVLVSRLSIDSISFRSVLGDRFSVLLMGLSSAAVGLGVSLVLNWR 1137 (1560)
Q Consensus 1058 ~~~~~~~~~~~Lr~~l~~~ll~~~~~ffd~~~~~~G~il~R~s~Di~~i~~~l~~~l~~~l~~~~~~i~~l~~~~~~~~~ 1137 (1560)
....+.++...+-..+|+|++++|+.||. ++++|++++|+. |.+.++++++..+...+.+++++++.++++++++|.
T Consensus 218 ~~~~~~rld~~l~~~~~~hll~Lpl~~f~--~r~~Ge~~sR~~-el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~ 294 (709)
T COG2274 218 IAHLGKRLDLELSGRFFRHLLRLPLSYFE--KRSVGEIISRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWK 294 (709)
T ss_pred HHHHHHHHhHHHHHHHHHHHHcCcHHHcc--CCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999986 799999999996 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhcchhhhhhhHHHHHHHHHHHhcchhHHHhccchHHHHHHHHHHHhhhHHHHHHHHH
Q 000406 1138 LTLVAAALTPFTLGASYLSL-IINVGPKIDNSSYAKASSIASGAVSNIRTVTTFSAQEQIINSFDKALSEPKKKSVKRSQ 1216 (1560)
Q Consensus 1138 l~lv~l~~ipl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~ 1216 (1560)
+++++++.+|++++..++.. ..++..++.....++.++.+.|++.|++|||+.+.|.++..+|++.+.++.+..++..+
T Consensus 295 L~li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~ 374 (709)
T COG2274 295 LTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEK 374 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHH
Confidence 99999999998887765544 44444444466778889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccCC
Q 000406 1217 ILGLTLGFSQGAMYVAYTFTLWFGAYLVKQGHASFGVVYKIFLILVLSSFSVGQLAGLAPDTSMAATAIPAVLQITKRKP 1296 (1560)
Q Consensus 1217 ~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~s~~ri~~i~~~~~ 1296 (1560)
.......+..++..+..++++|+|+++|..|.+|+|.++++.++...+..|+..+++++.++.....+.+|+.++++.++
T Consensus 375 ~~~~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~ 454 (709)
T COG2274 375 LALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPP 454 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccccccccccCCCCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEEC
Q 000406 1297 LIDNVKGRKLERSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIE 1376 (1560)
Q Consensus 1297 ~~~~~~~~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~Id 1376 (1560)
|.+........+...++|+|+||+|+|+.+ ++++|+|+||+|+|||+|||||+||||||||+|+|+|+|+|++|+|++|
T Consensus 455 E~~~~~~~~~~~~~~g~I~~~nvsf~y~~~-~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~d 533 (709)
T COG2274 455 EQEGDKTLIHLPKLQGEIEFENVSFRYGPD-DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLD 533 (709)
T ss_pred ccccccccccccccCceEEEEEEEEEeCCC-CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEC
Confidence 765544333344457889999999999765 3579999999999999999999999999999999999999999999999
Q ss_pred CEecCCCCHHHHhhceEEEcCCCCCCCccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChH
Q 000406 1377 GVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGG 1456 (1560)
Q Consensus 1377 Gvdi~~i~l~~LR~~I~~VpQdp~LF~gTIreNL~~g~~~~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGG 1456 (1560)
|+|+++++++.||++|+|||||++||+|||||||++++|++++||+++||+.+++++||.++|.||||+|||+|.+||||
T Consensus 534 g~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGG 613 (709)
T COG2274 534 GVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGG 613 (709)
T ss_pred CEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHHHhhcCEEEEEeCCEEEEecCHHH
Q 000406 1457 QKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHET 1536 (1560)
Q Consensus 1457 QrQRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlsti~~aDrIlVLd~G~IvE~Gt~~e 1536 (1560)
|||||+|||||++||+||||||||||||++||+.|.+.|.+...+||+|+||||+++++.||||+|||+|+|+|.|+|+|
T Consensus 614 QrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~e 693 (709)
T COG2274 614 QRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEE 693 (709)
T ss_pred HHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccChHHHHHHHHh
Q 000406 1537 LLASHLNGVYASLVRAE 1553 (1560)
Q Consensus 1537 Ll~~~~~g~y~~l~~~q 1553 (1560)
|++ .+|.|++++++|
T Consensus 694 ll~--~~g~y~~l~~~q 708 (709)
T COG2274 694 LLA--QGGLYARLYQQQ 708 (709)
T ss_pred HHH--hcChHHHHHhcc
Confidence 998 589999999887
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-84 Score=821.25 Aligned_cols=569 Identities=33% Similarity=0.502 Sum_probs=518.6
Q ss_pred cccHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHHHHHHH
Q 000406 329 PVGLFSLFKYSTKLDMILVLLGCIGALINGGALPWYSYFFGNFVNKIANESSDPDKTQMMKDAEKICLLMTVLAAIVMMG 408 (1560)
Q Consensus 329 ~~~~~~l~~y~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 408 (1560)
+.++..++....++ +..++-.++.+++.+++....|++...++|.+..... ...+....+.++++++...++
T Consensus 139 ~~~~~~f~~~~~~~-~~~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~-------~~tL~vl~ig~~~~~l~~~~l 210 (709)
T COG2274 139 PFGLSWFIPLLFKY-RRLLFEVLLASLLLQLLALATPLFSQIVIDKVLPDAS-------RSTLTVLAIGLLLAALFEALL 210 (709)
T ss_pred ccchHhHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc-------hhHHHHHHHHHHHHHHHHHHH
Confidence 33445555555443 3344455556666666677777789999998875432 233445566677777888889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 409 AYLEITCWRLVGERSAQRIRTKYLRAVLRQDIAFFDTEVSTSDIMHGISSDIAQIQEVMGEKVAHFAHNIFTFICGYTVG 488 (1560)
Q Consensus 409 ~~l~~~~~~~~~~~~~~~lr~~l~~~ll~~~l~ffd~~~~~G~i~~r~s~Dv~~i~~~l~~~l~~~i~~i~~~i~~~ii~ 488 (1560)
.+++.+...+++.+...++-.++++|++++|+.||+++ ++|++++|+ +|+++|++++...+...+.+++++++.++++
T Consensus 211 ~~lr~~~~~~~~~rld~~l~~~~~~hll~Lpl~~f~~r-~~Ge~~sR~-~el~~Ir~flt~~~l~~iiD~~~~~i~l~vm 288 (709)
T COG2274 211 RLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFEKR-SVGEIISRV-RELEQIREFLTGSILTLIIDLLFALIFLAVM 288 (709)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHcCcHHHccCC-ChhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999766 899999999 6899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHhHhHH
Q 000406 489 FLRSWKVSLVVLSVTPLMMFCGMAYKAVYVGLTSKEEASYRRAGSVAEQAISSIRTVFSFVAEDHFAVRYAGLLADSIPF 568 (1560)
Q Consensus 489 ~~~s~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIka~~~e~~~~~~~~~~~~~~~~~ 568 (1560)
++++|.|++++++.+|+++++..++.+..++..++.....++..+...|+++|++|||+.+.|..+..+|++...+..+.
T Consensus 289 ~~ys~~L~li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~ 368 (709)
T COG2274 289 FLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNI 368 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 569 GAKLGFAKGAGMGVIYLVTYATWALAFWYGSILVARKELSGGAAIACFFGVNVGGRGLALSLSYFAQFAQGTVAATRVFE 648 (1560)
Q Consensus 569 ~~k~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~ls~g~~~~~l~~~~~~~~~l~~~~~~~~~~~~a~~a~~Ri~~ 648 (1560)
+.+..........+..++..+..++++|+|+++|.+|.+|.|.++++.+....+..|+..+...+.++++...+.+|+.+
T Consensus 369 ~~~~~~~~~~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~d 448 (709)
T COG2274 369 GFKTEKLALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGD 448 (709)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHccCCCCCCCCCCCCcCCCCcccEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCC
Q 000406 649 IIDRVPEIDPYNSEGRKLSSVSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPT 728 (1560)
Q Consensus 649 ~l~~~~~~~~~~~~~~~~~~~~g~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~ 728 (1560)
+++.++|.+... .....++..|+|+|+||+|+|+.++ +++|+|+||+|+|||++||||+||||||||+|+|.|+|+|+
T Consensus 449 il~~~~E~~~~~-~~~~~~~~~g~I~~~nvsf~y~~~~-~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~ 526 (709)
T COG2274 449 ILDTPPEQEGDK-TLIHLPKLQGEIEFENVSFRYGPDD-PPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ 526 (709)
T ss_pred HhcCCccccccc-ccccccccCceEEEEEEEEEeCCCC-cchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 999877643321 1223455689999999999998653 47999999999999999999999999999999999999999
Q ss_pred ccEEEECCeecCCccHHHHhccEEEEecCCcCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCC
Q 000406 729 KGLITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDR 808 (1560)
Q Consensus 729 ~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Tv~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~ 808 (1560)
+|+|++||.|++++++..+|++||||+||+.||+|||+|||+++.|+.+++++++||+.+++++||.++|.||+|.+||+
T Consensus 527 ~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~ 606 (709)
T COG2274 527 QGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEG 606 (709)
T ss_pred CceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCccccccCCEEEEEeCCeEE
Q 000406 809 GTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVV 888 (1560)
Q Consensus 809 g~~LSgGQrQRialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~D~i~vl~~G~iv 888 (1560)
|.+|||||||||+|||||+++|+||||||||||||+++|+.|.+.|.+...|+|+|+||||++++++||||+||++|+|+
T Consensus 607 G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv 686 (709)
T COG2274 607 GANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIV 686 (709)
T ss_pred CCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecChhhHhhhcchHHHHHHH
Q 000406 889 EIGNHRQLLERGGAYHDLVKL 909 (1560)
Q Consensus 889 ~~G~~~~l~~~~~~~~~l~~~ 909 (1560)
++|+|+|+++.+|.|+.++..
T Consensus 687 ~~gs~~ell~~~g~y~~l~~~ 707 (709)
T COG2274 687 EQGSHEELLAQGGLYARLYQQ 707 (709)
T ss_pred ccCCHHHHHHhcChHHHHHhc
Confidence 999999999999999998864
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-83 Score=814.46 Aligned_cols=559 Identities=33% Similarity=0.516 Sum_probs=489.7
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 982 IWKLQRPEFAMIIFGFILGMHAGAILSIFPLILGQALQVYFDDTASTLRRDVRYLSLALVGLGFGCIIFMTGQQGFCGWA 1061 (1560)
Q Consensus 982 l~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 1061 (1560)
++.+.+ .+ .+.++.++.++...+....|.+++..++... ........+...++++.++..++.++..++..+.
T Consensus 7 l~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 79 (567)
T COG1132 7 LLKYLK-YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALL-----ADLGELLELLLLLLLLALLGGVLRALQSYLGSRL 79 (567)
T ss_pred HHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444 44 5566666666666777777788777777665 1112233344444555556667777777788888
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCcccccCChHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 1062 GTKLTMRVRELLFRSILKQEPGWFDFEENSTGVLVSRLSIDSISFRSVLGDRFSVLLMGLSSAAVGLGVSLVLNWRLTLV 1141 (1560)
Q Consensus 1062 ~~~~~~~Lr~~l~~~ll~~~~~ffd~~~~~~G~il~R~s~Di~~i~~~l~~~l~~~l~~~~~~i~~l~~~~~~~~~l~lv 1141 (1560)
+.+...++|..+++++++.|+.||+ ++++|++++|+++|++.++..+......+...++..+..+++++.++|.++++
T Consensus 80 ~~~~~~~lr~~~~~~l~~~~~~~~~--~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~ 157 (567)
T COG1132 80 GQKIVADLRRDLFEKLLRLPLSFFD--KAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALI 157 (567)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHhC--cCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 8999999999999999999999988 68899999999999999999999986666667888888899999999999999
Q ss_pred HHHHHHHHHHHHHHHH-HHhcchhhhhhhHHHHHHHHHHHhcchhHHHhccchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 000406 1142 AAALTPFTLGASYLSL-IINVGPKIDNSSYAKASSIASGAVSNIRTVTTFSAQEQIINSFDKALSEPKKKSVKRSQILGL 1220 (1560)
Q Consensus 1142 ~l~~ipl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1220 (1560)
+++..|++.+...+.. +.....+..+....+..+.+.|++.|+++||+|+.++...+++.+..++..+...+...+.+.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (567)
T COG1132 158 LLLILPLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEAL 237 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988887776554433 343333444667788899999999999999999999999999999999998888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccCCcccc
Q 000406 1221 TLGFSQGAMYVAYTFTLWFGAYLVKQGHASFGVVYKIFLILVLSSFSVGQLAGLAPDTSMAATAIPAVLQITKRKPLIDN 1300 (1560)
Q Consensus 1221 ~~~~~~~~~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~s~~ri~~i~~~~~~~~~ 1300 (1560)
..++...+..+..++++++|..++..+.+++|.+.+++.+......++..+......+..+..+.+|+.++++.+++..+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~ 317 (567)
T COG1132 238 LAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVED 317 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccC
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999998665332
Q ss_pred ccccccCCCCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEec
Q 000406 1301 VKGRKLERSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDL 1380 (1560)
Q Consensus 1301 ~~~~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi 1380 (1560)
.... .....+.|+|+||+|+|++ ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|+|||+||
T Consensus 318 ~~~~--~~~~~~~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI 393 (567)
T COG1132 318 PPDP--LKDTIGSIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDI 393 (567)
T ss_pred CCCC--CCCCCCeEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEeh
Confidence 2211 1223467999999999974 34699999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHhhceEEEcCCCCCCCccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHH
Q 000406 1381 REINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQR 1460 (1560)
Q Consensus 1381 ~~i~l~~LR~~I~~VpQdp~LF~gTIreNL~~g~~~~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQR 1460 (1560)
+++++++||++|++|||||+||+|||+|||++|+|++++||+++|++.++++|||.++|+||||+|||+|.+||||||||
T Consensus 394 ~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQr 473 (567)
T COG1132 394 RDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQR 473 (567)
T ss_pred hhcCHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHHHhhcCEEEEEeCCEEEEecCHHHHHhh
Q 000406 1461 IAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETLLAS 1540 (1560)
Q Consensus 1461 LaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlsti~~aDrIlVLd~G~IvE~Gt~~eLl~~ 1540 (1560)
||||||++++|||||||||||+||++||+.|+++|++..+++|+|+||||++++++||+|+|||+|+|+|+|+|+||++
T Consensus 474 laiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~- 552 (567)
T COG1132 474 LAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLA- 552 (567)
T ss_pred HHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHH-
Confidence 9999999999999999999999999999999999998888899999999999999999999999999999999999998
Q ss_pred ccChHHHHHHHHhhh
Q 000406 1541 HLNGVYASLVRAETE 1555 (1560)
Q Consensus 1541 ~~~g~y~~l~~~q~~ 1555 (1560)
++|.|++||+.|..
T Consensus 553 -~~g~y~~l~~~~~~ 566 (567)
T COG1132 553 -KGGLYARLYQAQGG 566 (567)
T ss_pred -cCCHHHHHHHHhhc
Confidence 58999999999864
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-82 Score=816.75 Aligned_cols=568 Identities=23% Similarity=0.343 Sum_probs=479.2
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 979 LSEIWKLQRPEFAMIIFGFILGMHAGAILSIFPLILGQALQVYFDDTASTLRRDVRYLSLALVGLGFGCIIFMTGQQGFC 1058 (1560)
Q Consensus 979 ~~~l~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 1058 (1560)
+++++++.+++++.+++++++.++..++....|+++..+++....... . ......+..+++++.++..++.+++.++.
T Consensus 10 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (588)
T PRK11174 10 TRWLKQQSKPAKRWLNLSILLGFLSGLLLIAQAWLLATILQALIIENI-P-REALLPPFILLILLFVLRALLAWLRERVG 87 (588)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-c-hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888888888888888888899999888876542111 1 11222333444455556677778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCcccccCChHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 1059 GWAGTKLTMRVRELLFRSILKQEPGWFDFEENSTGVLVSRLSIDSISFRSVLGDRFSVLLMGLSSAAVGLGVSLVLNWRL 1138 (1560)
Q Consensus 1059 ~~~~~~~~~~Lr~~l~~~ll~~~~~ffd~~~~~~G~il~R~s~Di~~i~~~l~~~l~~~l~~~~~~i~~l~~~~~~~~~l 1138 (1560)
...+.++..++|..+|++++++|+.||+ ++++|++++|+++|++.+++++...+..++.+++..++.++++++++|.+
T Consensus 88 ~~~~~~~~~~lr~~~~~~ll~~~~~~~~--~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 165 (588)
T PRK11174 88 FKAGQHIRQQIRQQVLDKLQQLGPAWIQ--GKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAA 165 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCchhhc--cCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999987 78999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHhcchhhhhhhHHHHHHHHHHHhcchhHHHhccchHHHHHHHHHHHhhhHHHHHHHHHH
Q 000406 1139 TLVAAALTPFTLGASYLS-LIINVGPKIDNSSYAKASSIASGAVSNIRTVTTFSAQEQIINSFDKALSEPKKKSVKRSQI 1217 (1560)
Q Consensus 1139 ~lv~l~~ipl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~ 1217 (1560)
++++++++|++++...+. .......+..++...+..+.+.|.++|+++||+|+.|+.+.++|++..++..+...+..+.
T Consensus 166 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 245 (588)
T PRK11174 166 GLILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRM 245 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999888888776655433 3333333333566778889999999999999999999999999999999998888877777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHH---------HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 000406 1218 LGLTLGFSQGAMYVAYTFTLWFGAYLVKQGHASFGVV---------YKIFLILVLSSFSVGQLAGLAPDTSMAATAIPAV 1288 (1560)
Q Consensus 1218 ~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~s~g~~---------~~~~~~~~~~~~~i~~l~~~~~~~~~~~~s~~ri 1288 (1560)
......+...+..+..+++.+++++.+ .|.+++|.+ +..+++...+..|+..+...+.....+..+.+|+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri 324 (588)
T PRK11174 246 AFLSSAVLEFFASISIALVAVYFGFSY-LGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESL 324 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666555555545545554443 377777653 1222344455678999999999999999999999
Q ss_pred HHHhccCCccccccccccCCCCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCC
Q 000406 1289 LQITKRKPLIDNVKGRKLERSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDP 1368 (1560)
Q Consensus 1289 ~~i~~~~~~~~~~~~~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p 1368 (1560)
.++++.+++.+.......+....+.|+|+||+|.|++ ++++|+|+||+|+|||++||||+||||||||+++|+|+| |
T Consensus 325 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vsf~~~~--~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p 401 (588)
T PRK11174 325 VTFLETPLAHPQQGEKELASNDPVTIEAEDLEILSPD--GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-P 401 (588)
T ss_pred HHHHcCCCcccCCCccccCCCCCceEEEEeeEEeccC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C
Confidence 9999765432211111111112346999999988864 346999999999999999999999999999999999999 9
Q ss_pred CccEEEECCEecCCCCHHHHhhceEEEcCCCCCCCccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCccccccC
Q 000406 1369 NQGKVMIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGE 1448 (1560)
Q Consensus 1369 ~~G~I~IdGvdi~~i~l~~LR~~I~~VpQdp~LF~gTIreNL~~g~~~~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge 1448 (1560)
++|+|++||+|+++++.+++|++|+||||||+||+|||||||++++|+++++|+++|++.++++++|.++|+||||.|||
T Consensus 402 ~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge 481 (588)
T PRK11174 402 YQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGD 481 (588)
T ss_pred CCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHHHhhcCEEEEEeCCEE
Q 000406 1449 SGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIREANMIAVVRDGAV 1528 (1560)
Q Consensus 1449 ~G~~LSGGQrQRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlsti~~aDrIlVLd~G~I 1528 (1560)
+|.+|||||||||||||||+++|+|||||||||+||++||+.|++.|++..+++|+|+||||++++..||+|+||++|+|
T Consensus 482 ~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~i 561 (588)
T PRK11174 482 QAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQI 561 (588)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeCCeE
Confidence 99999999999999999999999999999999999999999999999998889999999999999999999999999999
Q ss_pred EEecCHHHHHhhccChHHHHHHHHhhhh
Q 000406 1529 VEYGSHETLLASHLNGVYASLVRAETEA 1556 (1560)
Q Consensus 1529 vE~Gt~~eLl~~~~~g~y~~l~~~q~~~ 1556 (1560)
+|.|+|+||++ +++.|+++++.|.+.
T Consensus 562 ~e~G~~~eL~~--~~~~y~~l~~~q~~~ 587 (588)
T PRK11174 562 VQQGDYAELSQ--AGGLFATLLAHRQEE 587 (588)
T ss_pred eecCCHHHHHh--cchHHHHHHHHhhcC
Confidence 99999999998 579999999998764
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-81 Score=814.46 Aligned_cols=563 Identities=35% Similarity=0.485 Sum_probs=490.3
Q ss_pred hHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 978 QLSEIWKLQRPEFAMIIFGFILGMHAGAILSIFPLILGQALQVYFDDTASTLRRDVRYLSLALVGLGFGCIIFMTGQQGF 1057 (1560)
Q Consensus 978 ~~~~l~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 1057 (1560)
.+.+++++.++.+..++.++++.++...+....|++++.+++....... ..........++++.++..++.+++.++
T Consensus 148 ~~~~l~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 224 (711)
T TIGR00958 148 LLFRLLGLSGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKG---PPALASAIFFMCLLSIASSVSAGLRGGS 224 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778888888888888888888888888889999888887653211 1111122333444455566777778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCcccccCChHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 1058 CGWAGTKLTMRVRELLFRSILKQEPGWFDFEENSTGVLVSRLSIDSISFRSVLGDRFSVLLMGLSSAAVGLGVSLVLNWR 1137 (1560)
Q Consensus 1058 ~~~~~~~~~~~Lr~~l~~~ll~~~~~ffd~~~~~~G~il~R~s~Di~~i~~~l~~~l~~~l~~~~~~i~~l~~~~~~~~~ 1137 (1560)
..+.+.++..++|..+|++++++|+.||+ +++.|++++|+++|++.+++.+...+..++..++.+++.+++++.++|.
T Consensus 225 ~~~~~~~~~~~lr~~l~~~ll~~~~~~f~--~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~ 302 (711)
T TIGR00958 225 FNYTMARINLRIREDLFRSLLRQDLGFFD--ENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPR 302 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHc--CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 88999999999999999999999999987 6899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhcchhhhhhhHHHHHHHHHHHhcchhHHHhccchHHHHHHHHHHHhhhHHHHHHHHH
Q 000406 1138 LTLVAAALTPFTLGASYLSL-IINVGPKIDNSSYAKASSIASGAVSNIRTVTTFSAQEQIINSFDKALSEPKKKSVKRSQ 1216 (1560)
Q Consensus 1138 l~lv~l~~ipl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~ 1216 (1560)
+++++++.+|+.++...+.. ......+..++...+..+.+.|+++|+++||+|+.|+.+.++|.+..++..+...+...
T Consensus 303 l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 382 (711)
T TIGR00958 303 LTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKAL 382 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888887766554433 33333334456677788999999999999999999999999999999999888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccCC
Q 000406 1217 ILGLTLGFSQGAMYVAYTFTLWFGAYLVKQGHASFGVVYKIFLILVLSSFSVGQLAGLAPDTSMAATAIPAVLQITKRKP 1296 (1560)
Q Consensus 1217 ~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~s~~ri~~i~~~~~ 1296 (1560)
.......+...+..+..++++++|++++..|.++.|.+++++.+......++..+...+.++..+..+.+|+.++++.++
T Consensus 383 ~~~~~~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~ 462 (711)
T TIGR00958 383 AYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKP 462 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 77666666666777777888899999999999999999999999999999999999999999999999999999998765
Q ss_pred ccccccccccCCCCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEEC
Q 000406 1297 LIDNVKGRKLERSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIE 1376 (1560)
Q Consensus 1297 ~~~~~~~~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~Id 1376 (1560)
+.++.... .+.+..+.|+|+||+|+|++++++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++|
T Consensus 463 ~~~~~~~~-~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~id 541 (711)
T TIGR00958 463 NIPLTGTL-APLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLD 541 (711)
T ss_pred CCCCCCCC-CCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEEC
Confidence 53322111 11222457999999999986555679999999999999999999999999999999999999999999999
Q ss_pred CEecCCCCHHHHhhceEEEcCCCCCCCccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChH
Q 000406 1377 GVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGG 1456 (1560)
Q Consensus 1377 Gvdi~~i~l~~LR~~I~~VpQdp~LF~gTIreNL~~g~~~~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGG 1456 (1560)
|+|+++++.+++|++|+||||||+||+|||||||.++.+++++++++++++.++++++|.++|+||||.+||+|.+||||
T Consensus 542 g~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGG 621 (711)
T TIGR00958 542 GVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGG 621 (711)
T ss_pred CEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHH
Confidence 99999999999999999999999999999999999998889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHHHhhcCEEEEEeCCEEEEecCHHH
Q 000406 1457 QKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHET 1536 (1560)
Q Consensus 1457 QrQRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlsti~~aDrIlVLd~G~IvE~Gt~~e 1536 (1560)
|||||||||||+++|+|||||||||+||++||+.|++ ....+++|+|+||||++++..||+|+||++|+|+|.|+|+|
T Consensus 622 QkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~--~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~e 699 (711)
T TIGR00958 622 QKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE--SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQ 699 (711)
T ss_pred HHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH--hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHH
Confidence 9999999999999999999999999999999999999 33457899999999999999999999999999999999999
Q ss_pred HHhhccChHHHHHH
Q 000406 1537 LLASHLNGVYASLV 1550 (1560)
Q Consensus 1537 Ll~~~~~g~y~~l~ 1550 (1560)
|++ +++.|++|+
T Consensus 700 L~~--~~~~y~~lv 711 (711)
T TIGR00958 700 LME--DQGCYKHLV 711 (711)
T ss_pred HHh--CCCchHhcC
Confidence 998 578998874
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-80 Score=809.98 Aligned_cols=554 Identities=28% Similarity=0.364 Sum_probs=485.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 986 QRPEFAMIIFGFILGMHAGAILSIFPLILGQALQVYFDDTASTLRRDVRYLSLALVGLGFGCIIFMTGQQGFCGWAGTKL 1065 (1560)
Q Consensus 986 ~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 1065 (1560)
.++.++.++..++++++..++....|+++..+++...... .......+.+.++++.++..++.+++.++....+.++
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (686)
T TIGR03797 131 LRGARRDLLAILAMGLLGTLLGMLVPIATGILIGTAIPDA---DRSLLVQIALALLAAAVGAAAFQLAQSLAVLRLETRM 207 (686)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC---ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666677777777777778888888777655321 1112233444455555666778888888999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCcccccCChHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 1066 TMRVRELLFRSILKQEPGWFDFEENSTGVLVSRLSIDSISFRSVLGDRFSVLLMGLSSAAVGLGVSLVLNWRLTLVAAAL 1145 (1560)
Q Consensus 1066 ~~~Lr~~l~~~ll~~~~~ffd~~~~~~G~il~R~s~Di~~i~~~l~~~l~~~l~~~~~~i~~l~~~~~~~~~l~lv~l~~ 1145 (1560)
..++|..+|++++++|+.||+ ++++|++++|+. |++.+++++...+...+.+++..+++++++++++|.++++++++
T Consensus 208 ~~~l~~~~~~~ll~~~~~~~~--~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~ 284 (686)
T TIGR03797 208 DASLQAAVWDRLLRLPVSFFR--QYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAVAL 284 (686)
T ss_pred HHHHHHHHHHHHHcCCHHHHC--CCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987 789999999997 89999999999998989898888899999999999999998888
Q ss_pred HHHHHHHHHHHHH-HhcchhhhhhhHHHHHHHHHHHhcchhHHHhccchHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 000406 1146 TPFTLGASYLSLI-INVGPKIDNSSYAKASSIASGAVSNIRTVTTFSAQEQIINSFDKALSEPKKKSVKRSQILGLTLGF 1224 (1560)
Q Consensus 1146 ipl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1224 (1560)
+|+.++..++... .....+...+...+..+.+.|+++|+++||+++.|+.+.++|.+..++..+...+...+......+
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (686)
T TIGR03797 285 ALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLTVF 364 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8877665544333 333333345666778899999999999999999999999999999999999999999888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccCCcccccccc
Q 000406 1225 SQGAMYVAYTFTLWFGAYLVKQGHASFGVVYKIFLILVLSSFSVGQLAGLAPDTSMAATAIPAVLQITKRKPLIDNVKGR 1304 (1560)
Q Consensus 1225 ~~~~~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~s~~ri~~i~~~~~~~~~~~~~ 1304 (1560)
...+..+..++++|+|++++..|.+++|.++++.++...+..|+..+...+..+..+..+++|+.++++.+++.+...
T Consensus 365 ~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~-- 442 (686)
T TIGR03797 365 NAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEAK-- 442 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCc--
Confidence 888888888999999999999999999999999999999999999999999999999999999999987655432211
Q ss_pred ccCCCCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCC
Q 000406 1305 KLERSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREIN 1384 (1560)
Q Consensus 1305 ~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~ 1384 (1560)
.......+.|+|+||+|+|++. ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|+++++
T Consensus 443 ~~~~~~~~~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~ 521 (686)
T TIGR03797 443 TDPGKLSGAIEVDRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLD 521 (686)
T ss_pred CCCCCCCceEEEEEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCC
Confidence 1111123579999999999743 357999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhceEEEcCCCCCCCccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 000406 1385 VKWLRKQTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIA 1464 (1560)
Q Consensus 1385 l~~LR~~I~~VpQdp~LF~gTIreNL~~g~~~~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLA 1464 (1560)
++++|++|+||||||+||+|||||||++++| ++++++++|++.++++++|.++|+||||++||+|.+|||||||||+||
T Consensus 522 ~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialA 600 (686)
T TIGR03797 522 VQAVRRQLGVVLQNGRLMSGSIFENIAGGAP-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIA 600 (686)
T ss_pred HHHHHhccEEEccCCccCcccHHHHHhcCCC-CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999988 999999999999999999999999999999999999999999999999
Q ss_pred HHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHHHhhcCEEEEEeCCEEEEecCHHHHHhhccCh
Q 000406 1465 RAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETLLASHLNG 1544 (1560)
Q Consensus 1465 RALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlsti~~aDrIlVLd~G~IvE~Gt~~eLl~~~~~g 1544 (1560)
|||+++|+|||||||||+||++||+.|++.|++. ++|+|+||||+++++.||+|+||++|+|+|.|+|+||++ +++
T Consensus 601 RAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~--~~~ 676 (686)
T TIGR03797 601 RALVRKPRILLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMA--REG 676 (686)
T ss_pred HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHh--CCc
Confidence 9999999999999999999999999999999986 689999999999999999999999999999999999998 579
Q ss_pred HHHHHHHHh
Q 000406 1545 VYASLVRAE 1553 (1560)
Q Consensus 1545 ~y~~l~~~q 1553 (1560)
.|++|++.|
T Consensus 677 ~y~~l~~~q 685 (686)
T TIGR03797 677 LFAQLARRQ 685 (686)
T ss_pred HHHHHHHhc
Confidence 999999876
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-80 Score=737.67 Aligned_cols=550 Identities=25% Similarity=0.372 Sum_probs=487.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 996 GFILGMHAGAILSIFPLILGQALQVYFDDTASTLRRDVRYLSLALVGLGFGCIIFMTGQQGFCGWAGTKLTMRVRELLFR 1075 (1560)
Q Consensus 996 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~ 1075 (1560)
..+++.+.+++.....++++..+..++.... ......+...++++.++..+..+.+......++.++...+|..+++
T Consensus 5 ~~ll~~l~~i~~i~qa~llA~~l~~l~~~~~---~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~ 81 (559)
T COG4988 5 SALLAVLSGIAIIAQAALLADILTKLIEGQL---FQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLD 81 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666677777777777765432 2334455666677777888888888888899999999999999999
Q ss_pred HHHcCCCCCcccccCChHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 1076 SILKQEPGWFDFEENSTGVLVSRLSIDSISFRSVLGDRFSVLLMGLSSAAVGLGVSLVLNWRLTLVAAALTPFTLGASYL 1155 (1560)
Q Consensus 1076 ~ll~~~~~ffd~~~~~~G~il~R~s~Di~~i~~~l~~~l~~~l~~~~~~i~~l~~~~~~~~~l~lv~l~~ipl~~~~~~~ 1155 (1560)
++.+.+|.|-. ..|+|+..+.+...++.++.++...++.++.+.+..++.++.+++++|.-+++++++.|++.+++++
T Consensus 82 ~l~~~gp~~~~--~~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMil 159 (559)
T COG4988 82 KLAKLGPAFIA--QKPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMIL 159 (559)
T ss_pred HHHhCChhhhc--CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999865 7899999999999999999999999999999999999999999999999999999999999988877
Q ss_pred HHHHhcch-hhhhhhHHHHHHHHHHHhcchhHHHhccchHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 1156 SLIINVGP-KIDNSSYAKASSIASGAVSNIRTVTTFSAQEQIINSFDKALSEPKKKSVKRSQILGLTLGFSQGAMYVAYT 1234 (1560)
Q Consensus 1156 ~~~~~~~~-~~~~~~~~~~~~~~~e~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1234 (1560)
........ +++...+.+.++++.+.++|+.|+|+|++.+...+++.+...++.+.+++.-+..-+...+..++.++..+
T Consensus 160 vg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiA 239 (559)
T COG4988 160 VGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIA 239 (559)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66555433 44467889999999999999999999999999999999999999999999888877777777777777777
Q ss_pred HHHHHHHHHHhc-CcccHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccCCcccccccc-ccCCCCCc
Q 000406 1235 FTLWFGAYLVKQ-GHASFGVVYKIFLILVLSSFSVGQLAGLAPDTSMAATAIPAVLQITKRKPLIDNVKGR-KLERSKPL 1312 (1560)
Q Consensus 1235 ~~~~~g~~lv~~-g~~s~g~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~s~~ri~~i~~~~~~~~~~~~~-~~~~~~~~ 1312 (1560)
++..+.+..... |.+++...+.++++.--+..|+..+...++....+..+.+.+..+.+.+.+..+.... ...+..+.
T Consensus 240 lvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~~ 319 (559)
T COG4988 240 LVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPPI 319 (559)
T ss_pred HHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCCCc
Confidence 665554444445 8999999888888888899999999999999999999999999998876554332221 22333344
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhhce
Q 000406 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQT 1392 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~~I 1392 (1560)
.++++|++|+|++.+ ++++|+||+++||+++||||+||||||||+++|+|+++|++|+|.+||+|+++++.+.||+++
T Consensus 320 ei~~~~l~~~y~~g~--~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i 397 (559)
T COG4988 320 EISLENLSFRYPDGK--PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQI 397 (559)
T ss_pred eeeecceEEecCCCC--cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHe
Confidence 577779999998653 699999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCCCCccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHccCCC
Q 000406 1393 ALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSR 1472 (1560)
Q Consensus 1393 ~~VpQdp~LF~gTIreNL~~g~~~~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLARALLr~p~ 1472 (1560)
++|||+|+||+|||||||.+++++++|++++++++.+++.+|+.. |+|+||++||+|.+|||||+|||+|||||+++++
T Consensus 398 ~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~ 476 (559)
T COG4988 398 SWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPAS 476 (559)
T ss_pred eeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCCC
Confidence 999999999999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHHHhhcCEEEEEeCCEEEEecCHHHHHhhccChHHHHHHHH
Q 000406 1473 VLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETLLASHLNGVYASLVRA 1552 (1560)
Q Consensus 1473 ILILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlsti~~aDrIlVLd~G~IvE~Gt~~eLl~~~~~g~y~~l~~~ 1552 (1560)
++|||||||+||.+||+.|++.|.++++++|||+||||++.+++||+|+|||+|+++|.|+|++|.+ ++|.|++|+++
T Consensus 477 l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~--~~~~y~~l~~~ 554 (559)
T COG4988 477 LLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSE--KQGLYANLLKQ 554 (559)
T ss_pred EEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhh--cCcHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998 68999999999
Q ss_pred hhh
Q 000406 1553 ETE 1555 (1560)
Q Consensus 1553 q~~ 1555 (1560)
|.+
T Consensus 555 q~~ 557 (559)
T COG4988 555 QEG 557 (559)
T ss_pred Hhc
Confidence 865
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-80 Score=809.56 Aligned_cols=562 Identities=27% Similarity=0.345 Sum_probs=490.8
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 979 LSEIWKLQRPEFAMIIFGFILGMHAGAILSIFPLILGQALQVYFDDTASTLRRDVRYLSLALVGLGFGCIIFMTGQQGFC 1058 (1560)
Q Consensus 979 ~~~l~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 1058 (1560)
+.+++.+.++.++.++..++++++..++....|+++..+++.+..... ......+.+.++++.++..++.+++.++.
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (708)
T TIGR01193 144 LLKFIPLITRQKKLIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKM---MGTLGIISIGLIIAYIIQQILSYIQIFLL 220 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC---hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777777777777888888888776653211 11222333444445556667788888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCcccccCChHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 1059 GWAGTKLTMRVRELLFRSILKQEPGWFDFEENSTGVLVSRLSIDSISFRSVLGDRFSVLLMGLSSAAVGLGVSLVLNWRL 1138 (1560)
Q Consensus 1059 ~~~~~~~~~~Lr~~l~~~ll~~~~~ffd~~~~~~G~il~R~s~Di~~i~~~l~~~l~~~l~~~~~~i~~l~~~~~~~~~l 1138 (1560)
.+.+.++..++|..+|++++++|+.||+ ++++|++++|++ |++.+++++...+..++.++++.++.++++++++|.+
T Consensus 221 ~~~~~~~~~~l~~~~~~~ll~l~~~~f~--~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 297 (708)
T TIGR01193 221 NVLGQRLSIDIILSYIKHLFELPMSFFS--TRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLL 297 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHhC--CCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 9999999999999999999999999987 789999999998 9999999999998888889888888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHhcchhhhhhhHHHHHHHHHHHhcchhHHHhccchHHHHHHHHHHHhhhHHHHHHHHHH
Q 000406 1139 TLVAAALTPFTLGASYLSL-IINVGPKIDNSSYAKASSIASGAVSNIRTVTTFSAQEQIINSFDKALSEPKKKSVKRSQI 1217 (1560)
Q Consensus 1139 ~lv~l~~ipl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~ 1217 (1560)
++++++++|++++..++.. ......+.......+..+.+.|+++|+++||+++.|+.+.++|.+...+..+...+....
T Consensus 298 ~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 377 (708)
T TIGR01193 298 FLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKA 377 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988888776655443 333333344566778889999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccCCc
Q 000406 1218 LGLTLGFSQGAMYVAYTFTLWFGAYLVKQGHASFGVVYKIFLILVLSSFSVGQLAGLAPDTSMAATAIPAVLQITKRKPL 1297 (1560)
Q Consensus 1218 ~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~s~~ri~~i~~~~~~ 1297 (1560)
......+...+..+..++++++|++++..|.+|+|.++++.++...+..|+..+...+..+..+..+++|+.++++.+++
T Consensus 378 ~~~~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e 457 (708)
T TIGR01193 378 DQGQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSE 457 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 87777777777778888899999999999999999999999999999999999999999999999999999999887655
Q ss_pred cccccccccCCCCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECC
Q 000406 1298 IDNVKGRKLERSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEG 1377 (1560)
Q Consensus 1298 ~~~~~~~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdG 1377 (1560)
.+........+...+.|+|+||+|+|+. ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||
T Consensus 458 ~~~~~~~~~~~~~~~~I~~~~vsf~y~~--~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg 535 (708)
T TIGR01193 458 FINKKKRTELNNLNGDIVINDVSYSYGY--GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNG 535 (708)
T ss_pred ccccccccCCCCCCCcEEEEEEEEEcCC--CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECC
Confidence 3322111111222457999999999973 34699999999999999999999999999999999999999999999999
Q ss_pred EecCCCCHHHHhhceEEEcCCCCCCCccHHHHHhcC-CCCCCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChH
Q 000406 1378 VDLREINVKWLRKQTALVGQEPALFAGTIRDNIALG-NPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGG 1456 (1560)
Q Consensus 1378 vdi~~i~l~~LR~~I~~VpQdp~LF~gTIreNL~~g-~~~~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGG 1456 (1560)
+|+++++++++|++|+||||||+||+|||||||.++ ++++++++++++++.++++++|.++|+||||+|||+|.+||||
T Consensus 536 ~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgG 615 (708)
T TIGR01193 536 FSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGG 615 (708)
T ss_pred EEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHH
Confidence 999999999999999999999999999999999998 5789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHHHhhcCEEEEEeCCEEEEecCHHH
Q 000406 1457 QKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHET 1536 (1560)
Q Consensus 1457 QrQRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlsti~~aDrIlVLd~G~IvE~Gt~~e 1536 (1560)
|||||+|||||+++|+|||||||||+||++||+.|++.|++. +++|+|+||||++++..||+|+||++|+++|.|+|+|
T Consensus 616 QrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~ 694 (708)
T TIGR01193 616 QKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDE 694 (708)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999999999999999975 7899999999999999999999999999999999999
Q ss_pred HHhhccChHHHHHHH
Q 000406 1537 LLASHLNGVYASLVR 1551 (1560)
Q Consensus 1537 Ll~~~~~g~y~~l~~ 1551 (1560)
|++ ++|.|++|++
T Consensus 695 L~~--~~~~y~~l~~ 707 (708)
T TIGR01193 695 LLD--RNGFYASLIH 707 (708)
T ss_pred HHh--cCCcHHHHhh
Confidence 998 5799999875
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-79 Score=806.01 Aligned_cols=562 Identities=25% Similarity=0.348 Sum_probs=490.8
Q ss_pred hHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 978 QLSEIWKLQRPEFAMIIFGFILGMHAGAILSIFPLILGQALQVYFDDTASTLRRDVRYLSLALVGLGFGCIIFMTGQQGF 1057 (1560)
Q Consensus 978 ~~~~l~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 1057 (1560)
.++.++...++.+..++..++++++..++....|+++..+++....... ......+.+.++++.++..++.+++.++
T Consensus 141 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 217 (710)
T TIGR03796 141 LLRALWRRLRGSRGALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGR---QDWLRPLLLGMGLTALLQGVLTWLQLYY 217 (710)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC---hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677777777777777777777777788888887776553221 1112233344444555667788888889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCcccccCChHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 1058 CGWAGTKLTMRVRELLFRSILKQEPGWFDFEENSTGVLVSRLSIDSISFRSVLGDRFSVLLMGLSSAAVGLGVSLVLNWR 1137 (1560)
Q Consensus 1058 ~~~~~~~~~~~Lr~~l~~~ll~~~~~ffd~~~~~~G~il~R~s~Di~~i~~~l~~~l~~~l~~~~~~i~~l~~~~~~~~~ 1137 (1560)
....+.++..+++..+|++++++|+.||+ ++++|++++|++.| +.+++++...+..++.+++++++.++++++++|.
T Consensus 218 ~~~~~~~~~~~l~~~~~~~ll~l~~~~~~--~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 294 (710)
T TIGR03796 218 LRRLQIKLAVGMSARFLWHILRLPVRFFA--QRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPV 294 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHc--CCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999987 78999999999988 6899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HhcchhhhhhhHHHHHHHHHHHhcchhHHHhccchHHHHHHHHHHHhhhHHHHHHHHH
Q 000406 1138 LTLVAAALTPFTLGASYLSLI-INVGPKIDNSSYAKASSIASGAVSNIRTVTTFSAQEQIINSFDKALSEPKKKSVKRSQ 1216 (1560)
Q Consensus 1138 l~lv~l~~ipl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~ 1216 (1560)
+++++++++|+.+++.++... .....+.......+..+.+.|++.|+++||+++.++.+.++|.+...+..+...+...
T Consensus 295 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 374 (710)
T TIGR03796 295 LTLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGV 374 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998888877766554433 3333333455667788999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccCC
Q 000406 1217 ILGLTLGFSQGAMYVAYTFTLWFGAYLVKQGHASFGVVYKIFLILVLSSFSVGQLAGLAPDTSMAATAIPAVLQITKRKP 1296 (1560)
Q Consensus 1217 ~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~s~~ri~~i~~~~~ 1296 (1560)
+..+...+...+..+..++++++|++++..|.+++|.++++.++...+..|+..+...+..+..+..+++|+.++++.++
T Consensus 375 ~~~~~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~ 454 (710)
T TIGR03796 375 LTQILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPV 454 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 88888888888888888999999999999999999999999999999999999999999999999999999999998765
Q ss_pred cccccc----c-cccC-CCCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCc
Q 000406 1297 LIDNVK----G-RKLE-RSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQ 1370 (1560)
Q Consensus 1297 ~~~~~~----~-~~~~-~~~~~~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~ 1370 (1560)
+.+... . .... ....+.|+|+||+|+|++. ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++
T Consensus 455 e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~ 533 (710)
T TIGR03796 455 DPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPL-EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWS 533 (710)
T ss_pred ccccccccccccccccCCCCCCeEEEEEEEEecCCC-CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 533211 0 0111 1224579999999999853 3579999999999999999999999999999999999999999
Q ss_pred cEEEECCEecCCCCHHHHhhceEEEcCCCCCCCccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCccccccCCC
Q 000406 1371 GKVMIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESG 1450 (1560)
Q Consensus 1371 G~I~IdGvdi~~i~l~~LR~~I~~VpQdp~LF~gTIreNL~~g~~~~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G 1450 (1560)
|+|++||+|+++++++++|++|+||||||.||+|||||||.+++|+++++++++|++.++++++|.++|+||||++||+|
T Consensus 534 G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G 613 (710)
T TIGR03796 534 GEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGG 613 (710)
T ss_pred cEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCC
Confidence 99999999999999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHHHhhcCEEEEEeCCEEEE
Q 000406 1451 VQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIREANMIAVVRDGAVVE 1530 (1560)
Q Consensus 1451 ~~LSGGQrQRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlsti~~aDrIlVLd~G~IvE 1530 (1560)
.+|||||||||||||||+++|+|||||||||+||++||+.|.+.|++ .++|+|+||||++++..||||+||++|+|+|
T Consensus 614 ~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~ 691 (710)
T TIGR03796 614 ANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQ 691 (710)
T ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEeCCEEEE
Confidence 99999999999999999999999999999999999999999999987 5899999999999999999999999999999
Q ss_pred ecCHHHHHhhccChHHHHHH
Q 000406 1531 YGSHETLLASHLNGVYASLV 1550 (1560)
Q Consensus 1531 ~Gt~~eLl~~~~~g~y~~l~ 1550 (1560)
.|+|+||++ +++.|++|+
T Consensus 692 ~G~~~~Ll~--~~~~y~~l~ 709 (710)
T TIGR03796 692 RGTHEELWA--VGGAYARLI 709 (710)
T ss_pred ecCHHHHHH--cCCcHHHHh
Confidence 999999998 578999987
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-79 Score=780.35 Aligned_cols=564 Identities=24% Similarity=0.340 Sum_probs=481.8
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccch-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 981 EIWKLQRPEFAMIIFGFILGMHAGAILSIFPLILGQALQVYFDDTAS-TLRRDVRYLSLALVGLGFGCIIFMTGQQGFCG 1059 (1560)
Q Consensus 981 ~l~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 1059 (1560)
+++++.+++++.+++++++.++..++....|.+++.+++........ ..........+.++++.++..++.++..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (574)
T PRK11160 6 PFLKLYKRHWFMLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYGERLVSH 85 (574)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777888888777777777788777777654321110 00001111122344455566777788888888
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCcccccCChHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 1060 WAGTKLTMRVRELLFRSILKQEPGWFDFEENSTGVLVSRLSIDSISFRSVLGDRFSVLLMGLSSAAVGLGVSLVLNWRLT 1139 (1560)
Q Consensus 1060 ~~~~~~~~~Lr~~l~~~ll~~~~~ffd~~~~~~G~il~R~s~Di~~i~~~l~~~l~~~l~~~~~~i~~l~~~~~~~~~l~ 1139 (1560)
.++.++..++|..+|++++++|+.||+ +.++|++++|+++|++.+++++...++.++.+++..++.++++++++|.++
T Consensus 86 ~~~~~~~~~lR~~l~~~l~~~~~~~~~--~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 163 (574)
T PRK11160 86 DATFRVLTHLRVFTFSKLLPLSPAGLA--RYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTLA 163 (574)
T ss_pred HHHHHHHHHHHHHHHHHhhccChHhhc--cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999987 789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH-HHH-HHHHhcchhhhhhhHHHHHHHHHHHhcchhHHHhccchHHHHHHHHHHHhhhHHHHHHHHHH
Q 000406 1140 LVAAALTPFTLGA-SYL-SLIINVGPKIDNSSYAKASSIASGAVSNIRTVTTFSAQEQIINSFDKALSEPKKKSVKRSQI 1217 (1560)
Q Consensus 1140 lv~l~~ipl~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~ 1217 (1560)
+++++++|++++. .++ ........+..+....+..+.+.|.++|+++||+|+.++.+.++|++..++..+...+..+.
T Consensus 164 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 243 (574)
T PRK11160 164 LTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANL 243 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988777765443 232 33333333444667778889999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHHHHHHHHHHHhccCC
Q 000406 1218 LGLTLGFSQGAMYVAYTFTLWFGAYLVKQGHASFGVVYKIFLILVL-SSFSVGQLAGLAPDTSMAATAIPAVLQITKRKP 1296 (1560)
Q Consensus 1218 ~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~~~s~~ri~~i~~~~~ 1296 (1560)
.+....+..++..+..++++++|++++ .|.++.|.+++++.+... ...++..+...+..+..+..+++|+.++++.++
T Consensus 244 ~~~~~~~~~~~~~~~~~~i~~~g~~~~-~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~ 322 (574)
T PRK11160 244 TGLSQALMILANGLTVVLMLWLAAGGV-GGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKP 322 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 888888888888888888889999884 789999998887766544 345777888888999999999999999998765
Q ss_pred ccccccccccCCCCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEEC
Q 000406 1297 LIDNVKGRKLERSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIE 1376 (1560)
Q Consensus 1297 ~~~~~~~~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~Id 1376 (1560)
+.+....... ....+.|+|+||+|+|++. ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++|
T Consensus 323 ~~~~~~~~~~-~~~~~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~ 400 (574)
T PRK11160 323 EVTFPTTSTA-AADQVSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLN 400 (574)
T ss_pred CCCCCcccCC-CCCCCeEEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEC
Confidence 5322111111 1224579999999999753 3469999999999999999999999999999999999999999999999
Q ss_pred CEecCCCCHHHHhhceEEEcCCCCCCCccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChH
Q 000406 1377 GVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGG 1456 (1560)
Q Consensus 1377 Gvdi~~i~l~~LR~~I~~VpQdp~LF~gTIreNL~~g~~~~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGG 1456 (1560)
|+|+++++.+++|++|+||||||+||++||+|||++++|++++++++++++.+++++++.+ |+||||.|||+|.+||||
T Consensus 401 g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSgG 479 (574)
T PRK11160 401 GQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGG 479 (574)
T ss_pred CEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCHH
Confidence 9999999999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHHHhhcCEEEEEeCCEEEEecCHHH
Q 000406 1457 QKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHET 1536 (1560)
Q Consensus 1457 QrQRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlsti~~aDrIlVLd~G~IvE~Gt~~e 1536 (1560)
|||||||||||+++|+|||||||||+||++||+.|++.|++..+++|+|+||||++++..||+|++|++|+|+|.|+|+|
T Consensus 480 qrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~~~ 559 (574)
T PRK11160 480 EQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQE 559 (574)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCHHH
Confidence 99999999999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred HHhhccChHHHHHHHH
Q 000406 1537 LLASHLNGVYASLVRA 1552 (1560)
Q Consensus 1537 Ll~~~~~g~y~~l~~~ 1552 (1560)
|++ ++|.|++||+.
T Consensus 560 l~~--~~g~y~~l~~~ 573 (574)
T PRK11160 560 LLA--QQGRYYQLKQR 573 (574)
T ss_pred HHh--cCcHHHHHHhh
Confidence 998 68999999864
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-79 Score=838.67 Aligned_cols=570 Identities=30% Similarity=0.486 Sum_probs=489.7
Q ss_pred cHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 000406 331 GLFSLFKYSTKLDMILVLLGCIGALINGGALPWYSYFFGNFVNKIANESSDPDKTQMMKDAEKICLLMTVLAAIVMMGAY 410 (1560)
Q Consensus 331 ~~~~l~~y~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 410 (1560)
.+..++++.++..+ .++++++++++.+++.|+++++++++++.+.... .+......+++++++++++.+++.+
T Consensus 812 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~l~~~~~~i~~~~~~~ 884 (1466)
T PTZ00265 812 NLRIVYREIFSYKK-DVTIIALSILVAGGLYPVFALLYAKYVSTLFDFA------NLEANSNKYSLYILVIAIAMFISET 884 (1466)
T ss_pred hHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666655433 4778888899999999999999999999765321 1122234567777788888888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhcc-CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 411 LEITCWRLVGERSAQRIRTKYLRAVLRQDIAFFDT-EVSTSDIMHGISSDIAQIQEVMGEKVAHFAHNIFTFICGYTVGF 489 (1560)
Q Consensus 411 l~~~~~~~~~~~~~~~lr~~l~~~ll~~~l~ffd~-~~~~G~i~~r~s~Dv~~i~~~l~~~l~~~i~~i~~~i~~~ii~~ 489 (1560)
++.++..++++++..++|.++|++++++|+.|||. +.++|++++|+++|++.++..+...+..++..++.+++++++++
T Consensus 885 l~~~~~~~~~~~~~~~lR~~lf~~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~ 964 (1466)
T PTZ00265 885 LKNYYNNVIGEKVEKTMKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSF 964 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999985 34899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----H-------------HHHHHHHHHHHHHHHHhhHHHHHHhcch
Q 000406 490 LRSWKVSLVVLSVTPLMMFCGMAYKAVYVGLTS-----K-------------EEASYRRAGSVAEQAISSIRTVFSFVAE 551 (1560)
Q Consensus 490 ~~s~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~-----~-------------~~~~~~~~~~~~~E~l~gi~tIka~~~e 551 (1560)
+++|.++++++++++++. ..+.+..+.... . ..+...+....+.|++.|+++||+|+.|
T Consensus 965 ~~~~~l~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e 1041 (1466)
T PTZ00265 965 YFCPIVAAVLTGTYFIFM---RVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLE 1041 (1466)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcch
Confidence 999998877654443333 333332221110 0 1223456678999999999999999999
Q ss_pred HHHHHHHHHHHHhHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 552 DHFAVRYAGLLADSIPFGAKLGFAKGAGMGVIYLVTYATWALAFWYGSILVARKELSGGAAIACFFGVNVGGRGLALSLS 631 (1560)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~ls~g~~~~~l~~~~~~~~~l~~~~~ 631 (1560)
+.+.++|.+..+...+...+.....+...++..++.++..++++|+|++++..|.+++|.++++++++.....++..+..
T Consensus 1042 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~ 1121 (1466)
T PTZ00265 1042 DYFCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMS 1121 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888888888888888888888888889999999999999999999999887666655556778888
Q ss_pred HHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCc---CCCCcccEEEEEEEEEcCCCCCccccccceeEecCCCEEEEec
Q 000406 632 YFAQFAQGTVAATRVFEIIDRVPEIDPYNSEGRK---LSSVSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVG 708 (1560)
Q Consensus 632 ~~~~~~~a~~a~~Ri~~~l~~~~~~~~~~~~~~~---~~~~~g~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG 708 (1560)
.+..+.++..+++|++++++.+++.+..+..... .+...|.|+|+||+|+||++++.++|+|+||+|++|+++||||
T Consensus 1122 ~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG 1201 (1466)
T PTZ00265 1122 LKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVG 1201 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEEC
Confidence 9999999999999999999876543211111111 1234578999999999986555679999999999999999999
Q ss_pred CCCCChHHHHHHHhcCCCC------------------------------------------------------CccEEEE
Q 000406 709 TSGGGKSTVFALIERFYDP------------------------------------------------------TKGLITL 734 (1560)
Q Consensus 709 ~sGsGKSTLl~ll~g~~~~------------------------------------------------------~~G~I~i 734 (1560)
+||||||||+++|+|+|+| ++|+|++
T Consensus 1202 ~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~i 1281 (1466)
T PTZ00265 1202 ETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILL 1281 (1466)
T ss_pred CCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEE
Confidence 9999999999999999998 6999999
Q ss_pred CCeecCCccHHHHhccEEEEecCCcCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCCh
Q 000406 735 DGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSG 814 (1560)
Q Consensus 735 ~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Tv~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSg 814 (1560)
||+|+++++.+++|++|+||+|+|.||++||+|||.+|.++.+++++++||+.+++++||.+||+||||.+|++|.+|||
T Consensus 1282 dG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSG 1361 (1466)
T PTZ00265 1282 DGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSG 1361 (1466)
T ss_pred CCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCH
Confidence 99999999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCccccccCCEEEEEeC----CeEE
Q 000406 815 GQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKIS--VGRTTIVIAHRLATVKNANTIVVLDQ----GSVV 888 (1560)
Q Consensus 815 GQrQRialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~~D~i~vl~~----G~iv 888 (1560)
||||||||||||+++|+|||||||||+||+++++.|++.|+++. +++|+|+||||+++++.||+|+||++ |+++
T Consensus 1362 GQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv 1441 (1466)
T PTZ00265 1362 GQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFV 1441 (1466)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEE
Confidence 99999999999999999999999999999999999999999884 69999999999999999999999999 9955
Q ss_pred -EecChhhHhh-hcchHHHHHHHH
Q 000406 889 -EIGNHRQLLE-RGGAYHDLVKLA 910 (1560)
Q Consensus 889 -~~G~~~~l~~-~~~~~~~l~~~~ 910 (1560)
|.|+|+||++ ++|.|+++++.+
T Consensus 1442 ~e~Gth~eLl~~~~g~Y~~l~~~~ 1465 (1466)
T PTZ00265 1442 QAHGTHEELLSVQDGVYKKYVKLA 1465 (1466)
T ss_pred EEecCHHHHHhcCCChHHHHHhhc
Confidence 8999999998 589999998753
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-79 Score=798.39 Aligned_cols=558 Identities=26% Similarity=0.366 Sum_probs=486.5
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 979 LSEIWKLQRPEFAMIIFGFILGMHAGAILSIFPLILGQALQVYFDDTASTLRRDVRYLSLALVGLGFGCIIFMTGQQGFC 1058 (1560)
Q Consensus 979 ~~~l~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 1058 (1560)
+..++.+.++.++.+...++++++..++....|+++..+++....... ......+.+.++++.++..++.+++.++.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (694)
T TIGR03375 135 KHWFWSTLKESWPLYRDVLIASLLINLLALASPLFVMNVYDRVVPNQA---FETLWVLAIGVALAIVFDFVLKTLRSYFL 211 (694)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc---HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666777777777777777777777888888887776543211 11222233334444555667788888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCcccccCChHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 1059 GWAGTKLTMRVRELLFRSILKQEPGWFDFEENSTGVLVSRLSIDSISFRSVLGDRFSVLLMGLSSAAVGLGVSLVLNWRL 1138 (1560)
Q Consensus 1059 ~~~~~~~~~~Lr~~l~~~ll~~~~~ffd~~~~~~G~il~R~s~Di~~i~~~l~~~l~~~l~~~~~~i~~l~~~~~~~~~l 1138 (1560)
.+.+.++..++|..+|++++++|+.| + ++++|++++|+ +|++.+++++...+...+.++++.++.++++++++|.+
T Consensus 212 ~~~~~~~~~~l~~~~~~~ll~l~~~~-~--~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 287 (694)
T TIGR03375 212 DVAGKKADLILSAKLFERVLGLRMEA-R--PASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPL 287 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCccc-C--CCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999987 3 57999999999 79999999999999889999999988889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHhcchhhhhhhHHHHHHHHHHHhcchhHHHhccchHHHHHHHHHHHhhhHHHHHHHHHH
Q 000406 1139 TLVAAALTPFTLGASYLSL-IINVGPKIDNSSYAKASSIASGAVSNIRTVTTFSAQEQIINSFDKALSEPKKKSVKRSQI 1217 (1560)
Q Consensus 1139 ~lv~l~~ipl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~ 1217 (1560)
++++++.+|++++..++.. ......+.......+..+.+.|+++|+++||+++.|+.+.++|++..++..+...+..++
T Consensus 288 ~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 367 (694)
T TIGR03375 288 VWVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFL 367 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888888776655443 333333344567778889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccCCc
Q 000406 1218 LGLTLGFSQGAMYVAYTFTLWFGAYLVKQGHASFGVVYKIFLILVLSSFSVGQLAGLAPDTSMAATAIPAVLQITKRKPL 1297 (1560)
Q Consensus 1218 ~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~s~~ri~~i~~~~~~ 1297 (1560)
......+...+..+..++++++|++++..|.+++|.++++..+...+..|+..+...+.++..+..+++|+.++++.+++
T Consensus 368 ~~~~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e 447 (694)
T TIGR03375 368 SNLATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVE 447 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 88888888888888888999999999999999999999999999999999999999999999999999999999987654
Q ss_pred cccccccccCCCCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECC
Q 000406 1298 IDNVKGRKLERSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEG 1377 (1560)
Q Consensus 1298 ~~~~~~~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdG 1377 (1560)
.+............+.|+|+||+|+|++. ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.+||
T Consensus 448 ~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~-~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg 526 (694)
T TIGR03375 448 RPEGTRFLHRPRLQGEIEFRNVSFAYPGQ-ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDG 526 (694)
T ss_pred CCCCCCCCCCCCccceEEEEEEEEEeCCC-CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC
Confidence 33211111111224579999999999753 35699999999999999999999999999999999999999999999999
Q ss_pred EecCCCCHHHHhhceEEEcCCCCCCCccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHH
Q 000406 1378 VDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQ 1457 (1560)
Q Consensus 1378 vdi~~i~l~~LR~~I~~VpQdp~LF~gTIreNL~~g~~~~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQ 1457 (1560)
+|+++++++++|++|+||||||+||+|||||||.+++|++++++++++++.++++++|.++|+||||.+||+|.+|||||
T Consensus 527 ~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQ 606 (694)
T TIGR03375 527 VDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQ 606 (694)
T ss_pred EEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHHHhhcCEEEEEeCCEEEEecCHHHH
Q 000406 1458 KQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETL 1537 (1560)
Q Consensus 1458 rQRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlsti~~aDrIlVLd~G~IvE~Gt~~eL 1537 (1560)
||||+|||||+++|+|||||||||+||++||+.|++.|++..+++|+|+||||++++..||+|+||++|+|+|.|+|+||
T Consensus 607 rQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eL 686 (694)
T TIGR03375 607 RQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQV 686 (694)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHH
Confidence 99999999999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred HhhccCh
Q 000406 1538 LASHLNG 1544 (1560)
Q Consensus 1538 l~~~~~g 1544 (1560)
+++.+.|
T Consensus 687 l~~~~~~ 693 (694)
T TIGR03375 687 LEALRKG 693 (694)
T ss_pred HHHhhcC
Confidence 9854443
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-79 Score=782.37 Aligned_cols=567 Identities=21% Similarity=0.274 Sum_probs=477.5
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 332 LFSLFKYSTKLDMILVLLGCIGALINGGALPWYSYFFGNFVNKIANESSDPDKTQMMKDAEKICLLMTVLAAIVMMGAYL 411 (1560)
Q Consensus 332 ~~~l~~y~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l 411 (1560)
+.++++|.++. ++.++++++++++..++.+..+++++.++|.+.... .+ ......++.+++++.++..++.++
T Consensus 10 ~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~ 82 (588)
T PRK11174 10 TRWLKQQSKPA-KRWLNLSILLGFLSGLLLIAQAWLLATILQALIIEN--IP----REALLPPFILLILLFVLRALLAWL 82 (588)
T ss_pred hHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--Cc----hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567776654 455677788888888888889999999998764211 11 011223344455555666677788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 412 EITCWRLVGERSAQRIRTKYLRAVLRQDIAFFDTEVSTSDIMHGISSDIAQIQEVMGEKVAHFAHNIFTFICGYTVGFLR 491 (1560)
Q Consensus 412 ~~~~~~~~~~~~~~~lr~~l~~~ll~~~l~ffd~~~~~G~i~~r~s~Dv~~i~~~l~~~l~~~i~~i~~~i~~~ii~~~~ 491 (1560)
+.++....+.++..++|.+++++++++|+.+|+.. ++|++++|+++|++.+++.+...+..++..++.+++.+++++.+
T Consensus 83 ~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~-~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 161 (588)
T PRK11174 83 RERVGFKAGQHIRQQIRQQVLDKLQQLGPAWIQGK-PAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPI 161 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhccC-CHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888889999999999999999999999999755 89999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHhHhHHHhH
Q 000406 492 SWKVSLVVLSVTPLMMFCGMAYKAVYVGLTSKEEASYRRAGSVAEQAISSIRTVFSFVAEDHFAVRYAGLLADSIPFGAK 571 (1560)
Q Consensus 492 s~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIka~~~e~~~~~~~~~~~~~~~~~~~k 571 (1560)
+|++++++++++|+++++...+.+..++..++..+..++..+.+.|.++|+++||+|++|+.+.++|.+..++..+...+
T Consensus 162 ~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 241 (588)
T PRK11174 162 NWAAGLILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTME 241 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888888888888888888888889999999999999999999999999999999988888777666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 572 LGFAKGAGMGVIYLVTYATWALAFWYGSILVARKELSGGAA---------IACFFGVNVGGRGLALSLSYFAQFAQGTVA 642 (1560)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~ls~g~~---------~~~l~~~~~~~~~l~~~~~~~~~~~~a~~a 642 (1560)
..........+..++..+..+++.+++++.+. |.++.|.+ ++++.+...+..|+..+...+..+.++..+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~ 320 (588)
T PRK11174 242 VLRMAFLSSAVLEFFASISIALVAVYFGFSYL-GELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGA 320 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66665555555555444444444444444433 66666643 222233344556888888889999999999
Q ss_pred HHHHHHHHccCCCCCCCCCCCCcCCCCcccEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHh
Q 000406 643 ATRVFEIIDRVPEIDPYNSEGRKLSSVSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIE 722 (1560)
Q Consensus 643 ~~Ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~ 722 (1560)
++|+.++++.+++.++ ........+..+.|+|+||+|.|++ ++++|+|+||+|+|||++||||+||||||||+++|+
T Consensus 321 ~~ri~~~l~~~~~~~~-~~~~~~~~~~~~~i~~~~vsf~~~~--~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~ 397 (588)
T PRK11174 321 AESLVTFLETPLAHPQ-QGEKELASNDPVTIEAEDLEILSPD--GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALL 397 (588)
T ss_pred HHHHHHHHcCCCcccC-CCccccCCCCCceEEEEeeEEeccC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 9999999986543211 1111111112457999999987763 256999999999999999999999999999999999
Q ss_pred cCCCCCccEEEECCeecCCccHHHHhccEEEEecCCcCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHHHHHhCCCCCC
Q 000406 723 RFYDPTKGLITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYD 802 (1560)
Q Consensus 723 g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Tv~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~ 802 (1560)
|+| |++|+|++||+|+++++.+.+|++|+||||+|+||++||+|||.+|.++.++++++++|+.++++++++++|+|+|
T Consensus 398 g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~d 476 (588)
T PRK11174 398 GFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLD 476 (588)
T ss_pred cCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccc
Confidence 999 9999999999999999999999999999999999999999999999888899999999999999999999999999
Q ss_pred cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCccccccCCEEEEE
Q 000406 803 TQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKNANTIVVL 882 (1560)
Q Consensus 803 t~~~~~g~~LSgGQrQRialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~D~i~vl 882 (1560)
|.+|++|.+|||||||||+|||||+++|+|||||||||+||+++++.+++.|+++.+++|+|+||||++++..||+|++|
T Consensus 477 T~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl 556 (588)
T PRK11174 477 TPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVM 556 (588)
T ss_pred cccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEE
Confidence 99999999999999999999999999999999999999999999999999999988899999999999999999999999
Q ss_pred eCCeEEEecChhhHhhhcchHHHHHHHHH
Q 000406 883 DQGSVVEIGNHRQLLERGGAYHDLVKLAS 911 (1560)
Q Consensus 883 ~~G~iv~~G~~~~l~~~~~~~~~l~~~~~ 911 (1560)
++|+++|.|+|+||+++++.|++++..+.
T Consensus 557 ~~G~i~e~G~~~eL~~~~~~y~~l~~~q~ 585 (588)
T PRK11174 557 QDGQIVQQGDYAELSQAGGLFATLLAHRQ 585 (588)
T ss_pred eCCeEeecCCHHHHHhcchHHHHHHHHhh
Confidence 99999999999999999999999987653
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-78 Score=791.23 Aligned_cols=564 Identities=33% Similarity=0.537 Sum_probs=495.6
Q ss_pred ccHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 000406 330 VGLFSLFKYSTKLDMILVLLGCIGALINGGALPWYSYFFGNFVNKIANESSDPDKTQMMKDAEKICLLMTVLAAIVMMGA 409 (1560)
Q Consensus 330 ~~~~~l~~y~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 409 (1560)
..+.++++|.++ .+..+++.+++.++..++..+.+++.+.++|.+..... . ......+++++++.++..++.
T Consensus 147 ~~~~~l~~~~~~-~~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~ 218 (711)
T TIGR00958 147 DLLFRLLGLSGR-DWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKG---P----PALASAIFFMCLLSIASSVSA 218 (711)
T ss_pred hHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---H----HHHHHHHHHHHHHHHHHHHHH
Confidence 356677777764 45556677777888888888889999999998764221 1 112223344455556666777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 410 YLEITCWRLVGERSAQRIRTKYLRAVLRQDIAFFDTEVSTSDIMHGISSDIAQIQEVMGEKVAHFAHNIFTFICGYTVGF 489 (1560)
Q Consensus 410 ~l~~~~~~~~~~~~~~~lr~~l~~~ll~~~l~ffd~~~~~G~i~~r~s~Dv~~i~~~l~~~l~~~i~~i~~~i~~~ii~~ 489 (1560)
+++.+++.+.+.++..++|.+++++++++|+.||+.. ++|++++|+++|++.+++.+...+..++..++.+++.+++++
T Consensus 219 ~l~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~-~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~ 297 (711)
T TIGR00958 219 GLRGGSFNYTMARINLRIREDLFRSLLRQDLGFFDEN-KTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFML 297 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888889999999999999999999999999765 899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHhHhHHH
Q 000406 490 LRSWKVSLVVLSVTPLMMFCGMAYKAVYVGLTSKEEASYRRAGSVAEQAISSIRTVFSFVAEDHFAVRYAGLLADSIPFG 569 (1560)
Q Consensus 490 ~~s~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIka~~~e~~~~~~~~~~~~~~~~~~ 569 (1560)
.++|++++++++.+|+.+++...+.+...+..++.++..++..+.+.|+++|+++||+|++|+.+.++|.+..++..+..
T Consensus 298 ~~s~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~ 377 (711)
T TIGR00958 298 WLSPRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLN 377 (711)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888889998888888888888889999999999999999999999999999999998887777
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 570 AKLGFAKGAGMGVIYLVTYATWALAFWYGSILVARKELSGGAAIACFFGVNVGGRGLALSLSYFAQFAQGTVAATRVFEI 649 (1560)
Q Consensus 570 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~ls~g~~~~~l~~~~~~~~~l~~~~~~~~~~~~a~~a~~Ri~~~ 649 (1560)
.+.....+....+..++..+..++++++|++++.+|.+++|.+++++.+...+..++..+...+..+.++..+++|+.++
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~ 457 (711)
T TIGR00958 378 KRKALAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEY 457 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666555555666666677788899999999999999999999998899999999999999999999999999999
Q ss_pred HccCCCCCCCCCCCCcCCCCcccEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCc
Q 000406 650 IDRVPEIDPYNSEGRKLSSVSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTK 729 (1560)
Q Consensus 650 l~~~~~~~~~~~~~~~~~~~~g~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~ 729 (1560)
++.+++.++. ....+.+..+.|+|+||+|+||+++++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++
T Consensus 458 l~~~~~~~~~--~~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~ 535 (711)
T TIGR00958 458 LDRKPNIPLT--GTLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTG 535 (711)
T ss_pred hCCCCCCCCC--CCCCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCC
Confidence 9875543211 11112234578999999999986545679999999999999999999999999999999999999999
Q ss_pred cEEEECCeecCCccHHHHhccEEEEecCCcCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCC
Q 000406 730 GLITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRG 809 (1560)
Q Consensus 730 G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Tv~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g 809 (1560)
|+|.+||+|+++++.+.+|++|+||+|+|++|++||+|||.++.++.++++++++++.++++++++++|+|+||.+|++|
T Consensus 536 G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G 615 (711)
T TIGR00958 536 GQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKG 615 (711)
T ss_pred CEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCC
Confidence 99999999999999999999999999999999999999999998888899999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCccccccCCEEEEEeCCeEEE
Q 000406 810 TQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVE 889 (1560)
Q Consensus 810 ~~LSgGQrQRialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~D~i~vl~~G~iv~ 889 (1560)
.+|||||||||+||||++++|+|||||||||+||+++++.+++ . ...+++|+|+||||++++..||+|+||++|+|+|
T Consensus 616 ~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~-~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive 693 (711)
T TIGR00958 616 SQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-S-RSRASRTVLLIAHRLSTVERADQILVLKKGSVVE 693 (711)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-h-hccCCCeEEEEeccHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999998 3 3346899999999999999999999999999999
Q ss_pred ecChhhHhhhcchHHHH
Q 000406 890 IGNHRQLLERGGAYHDL 906 (1560)
Q Consensus 890 ~G~~~~l~~~~~~~~~l 906 (1560)
.|+|+||+++++.|+++
T Consensus 694 ~Gt~~eL~~~~~~y~~l 710 (711)
T TIGR00958 694 MGTHKQLMEDQGCYKHL 710 (711)
T ss_pred eeCHHHHHhCCCchHhc
Confidence 99999999988888875
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-78 Score=775.10 Aligned_cols=565 Identities=32% Similarity=0.447 Sum_probs=481.9
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 980 SEIWKLQRPEFAMIIFGFILGMHAGAILSIFPLILGQALQVYFDDTASTLRRDVRYLSLALVGLGFGCIIFMTGQQGFCG 1059 (1560)
Q Consensus 980 ~~l~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 1059 (1560)
..++++.++.++.++.++++.++........++++..+++....... .....++.+.++++.++..++.++..+...
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 90 (582)
T PRK11176 14 RRLWPTIAPFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKAD---RSVLKWMPLVVIGLMILRGITSFISSYCIS 90 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555444445556666655554432111 111122233334455566677777778888
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCcccccCChHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 1060 WAGTKLTMRVRELLFRSILKQEPGWFDFEENSTGVLVSRLSIDSISFRSVLGDRFSVLLMGLSSAAVGLGVSLVLNWRLT 1139 (1560)
Q Consensus 1060 ~~~~~~~~~Lr~~l~~~ll~~~~~ffd~~~~~~G~il~R~s~Di~~i~~~l~~~l~~~l~~~~~~i~~l~~~~~~~~~l~ 1139 (1560)
+.+.++...+|..+++++++.|+.+|+ +...|++++|+++|++.+.+.+...+..++.+++++++.++++++++|.++
T Consensus 91 ~~~~~~~~~lr~~~~~~l~~~~~~~~~--~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 168 (582)
T PRK11176 91 WVSGKVVMTMRRRLFGHMMGMPVSFFD--KQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLS 168 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHhC--CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999986 789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH-HHhcchhhhhhhHHHHHHHHHHHhcchhHHHhccchHHHHHHHHHHHhhhHHHHHHHHHHH
Q 000406 1140 LVAAALTPFTLGASYLSL-IINVGPKIDNSSYAKASSIASGAVSNIRTVTTFSAQEQIINSFDKALSEPKKKSVKRSQIL 1218 (1560)
Q Consensus 1140 lv~l~~ipl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 1218 (1560)
+++++++|+.++..+... ......+..+....+..+.+.|.++|+++||+++.++.+.++|++..++..+...+..+..
T Consensus 169 l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (582)
T PRK11176 169 LILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSAS 248 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998888887666554433 3333233335566778899999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccCCcc
Q 000406 1219 GLTLGFSQGAMYVAYTFTLWFGAYLVKQGHASFGVVYKIFLILVLSSFSVGQLAGLAPDTSMAATAIPAVLQITKRKPLI 1298 (1560)
Q Consensus 1219 ~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~s~~ri~~i~~~~~~~ 1298 (1560)
.....+...+..+..++++++|++.+..|.+++|.+++++.+...+..|+..+...+..+..+..+.+|+.++.+.+++.
T Consensus 249 ~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~ 328 (582)
T PRK11176 249 SISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEK 328 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcC
Confidence 88888888888888888899999999999999999999999988899999999999999999999999999998765442
Q ss_pred ccccccccCCCCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCE
Q 000406 1299 DNVKGRKLERSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGV 1378 (1560)
Q Consensus 1299 ~~~~~~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGv 1378 (1560)
+... .. ..+..+.|+++||+|+|++. ++++|+|+||+|++||++||||+||||||||+++|+|+|+|++|+|++||+
T Consensus 329 ~~~~-~~-~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~ 405 (582)
T PRK11176 329 DEGK-RV-IERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGH 405 (582)
T ss_pred CCCC-cC-CCCCCCeEEEEEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCE
Confidence 2111 11 11223469999999999754 357999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCHHHHhhceEEEcCCCCCCCccHHHHHhcCCCC-CCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHH
Q 000406 1379 DLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPK-ASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQ 1457 (1560)
Q Consensus 1379 di~~i~l~~LR~~I~~VpQdp~LF~gTIreNL~~g~~~-~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQ 1457 (1560)
|+++++.+++|++|+||||||++|+|||||||.+++++ .++++++++++.+++++++.++|+||||.+||+|.+|||||
T Consensus 406 ~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGq 485 (582)
T PRK11176 406 DLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQ 485 (582)
T ss_pred EhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHH
Confidence 99999999999999999999999999999999998654 79999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHHHhhcCEEEEEeCCEEEEecCHHHH
Q 000406 1458 KQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETL 1537 (1560)
Q Consensus 1458 rQRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlsti~~aDrIlVLd~G~IvE~Gt~~eL 1537 (1560)
||||+|||||+++|+|||||||||+||++||+.|.+.|++..+++|+|+||||+++++.||+|++|++|+|+|.|+|++|
T Consensus 486 rQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l 565 (582)
T PRK11176 486 RQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAEL 565 (582)
T ss_pred HHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred HhhccChHHHHHHHHhh
Q 000406 1538 LASHLNGVYASLVRAET 1554 (1560)
Q Consensus 1538 l~~~~~g~y~~l~~~q~ 1554 (1560)
++ +++.|++|+..|.
T Consensus 566 ~~--~~~~y~~l~~~~~ 580 (582)
T PRK11176 566 LA--QNGVYAQLHKMQF 580 (582)
T ss_pred Hh--CCChHHHHHHHHh
Confidence 98 5789999998764
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-77 Score=767.31 Aligned_cols=561 Identities=32% Similarity=0.514 Sum_probs=497.9
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 333 FSLFKYSTKLDMILVLLGCIGALINGGALPWYSYFFGNFVNKIANESSDPDKTQMMKDAEKICLLMTVLAAIVMMGAYLE 412 (1560)
Q Consensus 333 ~~l~~y~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~ 412 (1560)
..++++++ .+ .++++.++.++..++....+++++.+++.+.. . ......+..+++++.++..++.++.
T Consensus 5 ~~l~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~------~~~~~~~~~~~~~~~~~~~v~~~~~ 72 (567)
T COG1132 5 RRLLKYLK--YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALLA---D------LGELLELLLLLLLLALLGGVLRALQ 72 (567)
T ss_pred HHHHHHHH--HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---h------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555554 44 56667777777777777888888888888761 0 1222334445555555667777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCchhhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 413 ITCWRLVGERSAQRIRTKYLRAVLRQDIAFFDTEVSTSDIMHGISSDIAQIQEVMGEKVAHFAHNIFTFICGYTVGFLRS 492 (1560)
Q Consensus 413 ~~~~~~~~~~~~~~lr~~l~~~ll~~~l~ffd~~~~~G~i~~r~s~Dv~~i~~~l~~~l~~~i~~i~~~i~~~ii~~~~s 492 (1560)
.++..+.+.+...++|.++++++++.|+.+|+.. ++|++++|+++|++.++..+......+...++.+++.+++++..+
T Consensus 73 ~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~-~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (567)
T COG1132 73 SYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDKA-KSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLS 151 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhCcC-CcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 7778888899999999999999999999999866 899999999999999999999886656657888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHhHhHHHhHH
Q 000406 493 WKVSLVVLSVTPLMMFCGMAYKAVYVGLTSKEEASYRRAGSVAEQAISSIRTVFSFVAEDHFAVRYAGLLADSIPFGAKL 572 (1560)
Q Consensus 493 ~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIka~~~e~~~~~~~~~~~~~~~~~~~k~ 572 (1560)
|.+++++++..|++.++..++.++.++..++.++..++..+.+.|.++|+++||+|+.++...+++.+..+...+...+.
T Consensus 152 ~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~ 231 (567)
T COG1132 152 WRLALILLLILPLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRA 231 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988888887778888888888899999999999999999999999999999999888887777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 000406 573 GFAKGAGMGVIYLVTYATWALAFWYGSILVARKELSGGAAIACFFGVNVGGRGLALSLSYFAQFAQGTVAATRVFEIIDR 652 (1560)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~ls~g~~~~~l~~~~~~~~~l~~~~~~~~~~~~a~~a~~Ri~~~l~~ 652 (1560)
....+...++..++..+..++++++|.+++..+.+++|.+.+++.+......++..+...+..+..+..+++|++++++.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~ 311 (567)
T COG1132 232 SRLEALLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDE 311 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 77777777888888888889999999999999999999999999988888889999999999999999999999999997
Q ss_pred CCCCCCCCCCCCcCCCCcccEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEE
Q 000406 653 VPEIDPYNSEGRKLSSVSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732 (1560)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~g~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I 732 (1560)
+++..+.+.. .....+.|+|+||+|+|++ +.++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|
T Consensus 312 ~~~~~~~~~~---~~~~~~~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I 386 (567)
T COG1132 312 EPEVEDPPDP---LKDTIGSIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEI 386 (567)
T ss_pred CccccCCCCC---CCCCCCeEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeE
Confidence 5543221111 2234578999999999974 3569999999999999999999999999999999999999999999
Q ss_pred EECCeecCCccHHHHhccEEEEecCCcCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCC
Q 000406 733 TLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQL 812 (1560)
Q Consensus 733 ~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Tv~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~L 812 (1560)
++||+|+++++...+|++|++|||+|+||++||+|||.+|.+++++++++++|+.++++++|+++|+|+||.+|++|.+|
T Consensus 387 ~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~L 466 (567)
T COG1132 387 LIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNL 466 (567)
T ss_pred EECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCccccccCCEEEEEeCCeEEEecC
Q 000406 813 SGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGN 892 (1560)
Q Consensus 813 SgGQrQRialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~D~i~vl~~G~iv~~G~ 892 (1560)
|||||||||||||++++|+|||||||||+||+++|+.+++.++++.++||+|+|+||++++++||+|+||++|+|+|.|+
T Consensus 467 SgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~ 546 (567)
T COG1132 467 SGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGT 546 (567)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecC
Confidence 99999999999999999999999999999999999999999998888999999999999999999999999999999999
Q ss_pred hhhHhhhcchHHHHHHHHH
Q 000406 893 HRQLLERGGAYHDLVKLAS 911 (1560)
Q Consensus 893 ~~~l~~~~~~~~~l~~~~~ 911 (1560)
|+||++++|.|+++++.+.
T Consensus 547 h~eLl~~~g~y~~l~~~~~ 565 (567)
T COG1132 547 HEELLAKGGLYARLYQAQG 565 (567)
T ss_pred HHHHHHcCCHHHHHHHHhh
Confidence 9999999999999997653
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-77 Score=771.86 Aligned_cols=565 Identities=25% Similarity=0.308 Sum_probs=470.3
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 981 EIWKLQRPEFAMIIFGFILGMHAGAILSIFPLILGQALQVYFDDTASTLRRDVRYLSLALVGLGFGCIIFMTGQQGFCGW 1060 (1560)
Q Consensus 981 ~l~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 1060 (1560)
++..+.++.++.++..+++.++...+....|++++.+++.......... .....+.++++++.++..++.++..++...
T Consensus 13 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (592)
T PRK10790 13 RLLAYGSPWRKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPL-GLVAGLAAAYVGLQLLAAGLHYAQSLLFNR 91 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666667777777777777777888888888776543211111 001112222333444556677778888888
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCcccccCChHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 1061 AGTKLTMRVRELLFRSILKQEPGWFDFEENSTGVLVSRLSIDSISFRSVLGDRFSVLLMGLSSAAVGLGVSLVLNWRLTL 1140 (1560)
Q Consensus 1061 ~~~~~~~~Lr~~l~~~ll~~~~~ffd~~~~~~G~il~R~s~Di~~i~~~l~~~l~~~l~~~~~~i~~l~~~~~~~~~l~l 1140 (1560)
++.++..++|..+|+++++.|+.+|+ +.+.|++++|+++|++.+++.+...+..++.+++.+++.++++++++|.+++
T Consensus 92 ~~~~~~~~lr~~l~~~l~~~~~~~~~--~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l 169 (592)
T PRK10790 92 AAVGVVQQLRTDVMDAALRQPLSAFD--TQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMAL 169 (592)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHhC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999987 7899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhc-chhhhhhhHHHHHHHHHHHhcchhHHHhccchHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 000406 1141 VAAALTPFTLGASYLSLIINV-GPKIDNSSYAKASSIASGAVSNIRTVTTFSAQEQIINSFDKALSEPKKKSVKRSQILG 1219 (1560)
Q Consensus 1141 v~l~~ipl~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 1219 (1560)
++++++|+.++...+...... ..+..++...+..+.+.|.+.|+++||+|+.++.+.++|.+..++..+...+..+..+
T Consensus 170 i~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (592)
T PRK10790 170 VAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDG 249 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888876655444333222 2222245566778889999999999999999999999999998888777776666554
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccCCcc
Q 000406 1220 LT-LGFSQGAMYVAYTFTLWFGAYLVKQGHASFGVVYKIFLILVLSSFSVGQLAGLAPDTSMAATAIPAVLQITKRKPLI 1298 (1560)
Q Consensus 1220 ~~-~~~~~~~~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~s~~ri~~i~~~~~~~ 1298 (1560)
.. ..+..++..+..+++.++++. +..|.+++|.++++..+...+..|+..+...+..+..+..+++|+.++++.+++.
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~ 328 (592)
T PRK10790 250 FLLRPLLSLFSALILCGLLMLFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQ 328 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 43 223333333332333333333 6789999999999999999999999999999999999999999999998765432
Q ss_pred ccccccccCCCCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCE
Q 000406 1299 DNVKGRKLERSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGV 1378 (1560)
Q Consensus 1299 ~~~~~~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGv 1378 (1560)
.... .. ....+.|+|+||+|+|+. ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.+||+
T Consensus 329 ~~~~--~~-~~~~~~i~~~~v~f~y~~--~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~ 403 (592)
T PRK10790 329 YGND--DR-PLQSGRIDIDNVSFAYRD--DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGR 403 (592)
T ss_pred CCCC--cc-CCCCCeEEEEEEEEEeCC--CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCE
Confidence 1111 11 122356999999999974 246999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCHHHHhhceEEEcCCCCCCCccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHH
Q 000406 1379 DLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQK 1458 (1560)
Q Consensus 1379 di~~i~l~~LR~~I~~VpQdp~LF~gTIreNL~~g~~~~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQr 1458 (1560)
|+++++++.+|++|+||||||.||+|||||||++++ .+++++++++++.++++++|.++|+||||.+||+|.+||||||
T Consensus 404 ~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~-~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqr 482 (592)
T PRK10790 404 PLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR-DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQK 482 (592)
T ss_pred EhhhCCHHHHHhheEEEccCCccccchHHHHHHhCC-CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHH
Confidence 999999999999999999999999999999999997 6899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHHHhhcCEEEEEeCCEEEEecCHHHHH
Q 000406 1459 QRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETLL 1538 (1560)
Q Consensus 1459 QRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlsti~~aDrIlVLd~G~IvE~Gt~~eLl 1538 (1560)
|||||||||+++|+|||||||||+||++||+.|++.|++..+++|+|+||||++++..||+|++|++|+++|.|+|+||+
T Consensus 483 QRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~ 562 (592)
T PRK10790 483 QLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLL 562 (592)
T ss_pred HHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred hhccChHHHHHHHHhhhhc
Q 000406 1539 ASHLNGVYASLVRAETEAN 1557 (1560)
Q Consensus 1539 ~~~~~g~y~~l~~~q~~~~ 1557 (1560)
+ +++.|+++++.|...+
T Consensus 563 ~--~~~~y~~l~~~~~~~~ 579 (592)
T PRK10790 563 A--AQGRYWQMYQLQLAGE 579 (592)
T ss_pred h--CCCHHHHHHHHHhhhc
Confidence 8 5799999999885443
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-77 Score=783.52 Aligned_cols=566 Identities=30% Similarity=0.397 Sum_probs=495.6
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 979 LSEIWKLQRPEFAMIIFGFILGMHAGAILSIFPLILGQALQVYFDDTASTLRRDVRYLSLALVGLGFGCIIFMTGQQGFC 1058 (1560)
Q Consensus 979 ~~~l~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 1058 (1560)
+.+++.+.++.+..+...++++++..++....|+++..+++..+.... ......+.+.++++.++..++.+++.++.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~---~~~l~~l~~~~~~~~~~~~~~~~l~~~~~ 203 (694)
T TIGR01846 127 FSWFIPAIIRYRKQFREVLLISLALQLFALVTPLLFQVVIDKVLVHRG---LSTLSVLALAMLAVAIFEPALGGLRTYLF 203 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC---hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666677777777777777777777788888887776553211 12223344445555566777888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCcccccCChHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 1059 GWAGTKLTMRVRELLFRSILKQEPGWFDFEENSTGVLVSRLSIDSISFRSVLGDRFSVLLMGLSSAAVGLGVSLVLNWRL 1138 (1560)
Q Consensus 1059 ~~~~~~~~~~Lr~~l~~~ll~~~~~ffd~~~~~~G~il~R~s~Di~~i~~~l~~~l~~~l~~~~~~i~~l~~~~~~~~~l 1138 (1560)
...+.++..++|..+|++++++|+.||+ ++++|++++|+ +|++.+++++...+..++.+++++++.++++++++|.+
T Consensus 204 ~~~~~~~~~~l~~~~~~~l~~l~~~~f~--~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 280 (694)
T TIGR01846 204 AHLTSRIDVELGARLYRHLLGLPLGYFE--SRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTL 280 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHcC--CCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999987 79999999999 69999999999999888888888888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHhcchhhhhhhHHHHHHHHHHHhcchhHHHhccchHHHHHHHHHHHhhhHHHHHHHHHH
Q 000406 1139 TLVAAALTPFTLGASYLSL-IINVGPKIDNSSYAKASSIASGAVSNIRTVTTFSAQEQIINSFDKALSEPKKKSVKRSQI 1217 (1560)
Q Consensus 1139 ~lv~l~~ipl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~ 1217 (1560)
++++++++|+++++.++.. ......+...+...+..+.+.|++.|+++||+++.|+.+.++|++..++..+...+..+.
T Consensus 281 ~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 360 (694)
T TIGR01846 281 TGVVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNL 360 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998888887776555433 333333333556677889999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccCCc
Q 000406 1218 LGLTLGFSQGAMYVAYTFTLWFGAYLVKQGHASFGVVYKIFLILVLSSFSVGQLAGLAPDTSMAATAIPAVLQITKRKPL 1297 (1560)
Q Consensus 1218 ~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~s~~ri~~i~~~~~~ 1297 (1560)
......+...+..+..++++|+|++++..|.+++|.++++.++...+..|+..+...+..+..+..+++|+.++++.+++
T Consensus 361 ~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e 440 (694)
T TIGR01846 361 GNIAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTE 440 (694)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 88888888888888899999999999999999999999999999999999999999999999999999999999987654
Q ss_pred cccccccccCCCCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECC
Q 000406 1298 IDNVKGRKLERSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEG 1377 (1560)
Q Consensus 1298 ~~~~~~~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdG 1377 (1560)
.+...... .....+.|+|+||+|+|++. ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||
T Consensus 441 ~~~~~~~~-~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg 518 (694)
T TIGR01846 441 PRSAGLAA-LPELRGAITFENIRFRYAPD-SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDG 518 (694)
T ss_pred ccCCCCCC-CCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC
Confidence 33211111 11224579999999999743 34699999999999999999999999999999999999999999999999
Q ss_pred EecCCCCHHHHhhceEEEcCCCCCCCccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHH
Q 000406 1378 VDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQ 1457 (1560)
Q Consensus 1378 vdi~~i~l~~LR~~I~~VpQdp~LF~gTIreNL~~g~~~~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQ 1457 (1560)
+|+++++.+++|++|+||||||++|+|||||||++++|++++++++++++.+++++++.++|+||||.++++|.+|||||
T Consensus 519 ~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq 598 (694)
T TIGR01846 519 VDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQ 598 (694)
T ss_pred EehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHH
Confidence 99999999999999999999999999999999999989999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHHHhhcCEEEEEeCCEEEEecCHHHH
Q 000406 1458 KQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETL 1537 (1560)
Q Consensus 1458 rQRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlsti~~aDrIlVLd~G~IvE~Gt~~eL 1537 (1560)
||||||||||+++|+|||||||||+||++||+.+.+.|++..+++|+|+||||++++..||+|++|++|+|+|.|+|+||
T Consensus 599 ~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l 678 (694)
T TIGR01846 599 RQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEEL 678 (694)
T ss_pred HHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred HhhccChHHHHHHHHhh
Q 000406 1538 LASHLNGVYASLVRAET 1554 (1560)
Q Consensus 1538 l~~~~~g~y~~l~~~q~ 1554 (1560)
++ ++|.|++|++.|.
T Consensus 679 ~~--~~~~y~~l~~~~~ 693 (694)
T TIGR01846 679 LA--LQGLYARLWQQQS 693 (694)
T ss_pred HH--cCChHHHHHHhhc
Confidence 98 5799999998763
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-78 Score=706.51 Aligned_cols=510 Identities=26% Similarity=0.323 Sum_probs=441.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccCChHHHHHHHhhhHHHHHHHHHHHHH
Q 000406 1036 LSLALVGLGFGCIIFMTGQQGFCGWAGTKLTMRVRELLFRSILKQEPGWFDFEENSTGVLVSRLSIDSISFRSVLGDRFS 1115 (1560)
Q Consensus 1036 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~ll~~~~~ffd~~~~~~G~il~R~s~Di~~i~~~l~~~l~ 1115 (1560)
....+=++++...+..++.....+.+..++..++|.++|+++...++.-.. +...|+++||+..|++.+++.+-..+.
T Consensus 60 p~a~VR~~aI~Rt~~RY~ERlvsH~AtfrvL~~lRv~~f~kl~p~sp~~~~--r~r~gdLL~RLvaDVd~Ld~lyLRvi~ 137 (573)
T COG4987 60 PSAGVRGLAILRTAARYVERLVSHDATFRVLSALRVRLFEKLEPLSPALLL--RYRSGDLLNRLVADVDALDNLYLRVIA 137 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCChHHHH--hcChHhHHHHHHhhHHHHhhHHHHHHh
Confidence 344455567888888999999999999999999999999999999888654 679999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcchhhh-hhhHHHHHHHHHHHhcchhHHHhccch
Q 000406 1116 VLLMGLSSAAVGLGVSLVLNWRLTLVAAALTP-FTLGASYLSLIINVGPKID-NSSYAKASSIASGAVSNIRTVTTFSAQ 1193 (1560)
Q Consensus 1116 ~~l~~~~~~i~~l~~~~~~~~~l~lv~l~~ip-l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~l~gi~tIraf~~e 1193 (1560)
+.+..+....+..+.+.+++|.+++.+..++. +.+++.+++.+..+..... ........+.+.+.+.|....+.||++
T Consensus 138 P~~~a~~~~~~~~i~L~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~ 217 (573)
T COG4987 138 PAVVALVLIAVVTIGLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAE 217 (573)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccH
Confidence 99999888888888888889988877655444 3334455555444433333 556677889999999999999999999
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHH-
Q 000406 1194 EQIINSFDKALSEPKKKSVKRSQILGLTLGFSQGAMYVAYTFTLWFGAYLVKQGHASFGVVYKIFLILVLSSFSVGQLA- 1272 (1560)
Q Consensus 1194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~i~~l~- 1272 (1560)
+.+.+.+.+..+.+.+...+.+++..+...+.+++..+..+..+.+.+..+..|..+......+.+.......++..+.
T Consensus 218 ~~~~~~l~~~e~~~~~~q~k~~~~~~~~~a~~~l~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~ 297 (573)
T COG4987 218 DAYRTALEATEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAP 297 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHHHHHHhhhcc
Confidence 9999999999999999999988888888888777776666644444445566677665444444444445555666666
Q ss_pred hhHHHHHHHHHHHHHHHHHhccCCccccccccccCCCCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCC
Q 000406 1273 GLAPDTSMAATAIPAVLQITKRKPLIDNVKGRKLERSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSG 1352 (1560)
Q Consensus 1273 ~~~~~~~~~~~s~~ri~~i~~~~~~~~~~~~~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SG 1352 (1560)
..+.+..+...++.|+.++.+.+++...+ ..+.+.. +..++++||+|+|+++ .+++|+|+||++++||||||+||||
T Consensus 298 ~A~~~lgq~~~Sa~Rl~~i~~q~~e~~~~-~~~~~~~-~~~l~~~~vsF~y~~~-~~~~L~~~~l~l~~GEkvAIlG~SG 374 (573)
T COG4987 298 GAFQHLGQVIASARRLNDILDQKPEVTFP-DEQTATT-GQALELRNVSFTYPGQ-QTKALKNFNLTLAQGEKVAILGRSG 374 (573)
T ss_pred hhHHHhhHHHHHHHHHhhhccCCcccCCC-ccccCCc-cceeeeccceeecCCC-ccchhhccceeecCCCeEEEECCCC
Confidence 77788999999999999999887765443 1212222 2279999999999875 4579999999999999999999999
Q ss_pred CCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhhceEEEcCCCCCCCccHHHHHhcCCCCCCHHHHHHHHHHHhHH
Q 000406 1353 SGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIH 1432 (1560)
Q Consensus 1353 SGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~~I~~VpQdp~LF~gTIreNL~~g~~~~sd~eI~~al~~a~l~ 1432 (1560)
||||||+++|.|.|+|++|+|.++|+|++.++.+.+|+.|++++|.++||++|+|+||.+++|+++|||+|+++++++|+
T Consensus 375 sGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~ 454 (573)
T COG4987 375 SGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLE 454 (573)
T ss_pred CCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChH
Q 000406 1433 KFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLS 1512 (1560)
Q Consensus 1433 ~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRls 1512 (1560)
+++.+.|+||+|.+||+|.+|||||||||+|||+||+++|++||||||.+||++||++|.+.|.+..+|+|+|+||||+.
T Consensus 455 ~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~ 534 (573)
T COG4987 455 KLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLR 534 (573)
T ss_pred HHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCEEEEEeCCEEEEecCHHHHHhhccChHHHHHHHH
Q 000406 1513 TIREANMIAVVRDGAVVEYGSHETLLASHLNGVYASLVRA 1552 (1560)
Q Consensus 1513 ti~~aDrIlVLd~G~IvE~Gt~~eLl~~~~~g~y~~l~~~ 1552 (1560)
.+..||||+|||+|+++|+|+|++|++ ++|.|++|++.
T Consensus 535 ~le~~drIivl~~Gkiie~G~~~~Ll~--~~g~~~~l~q~ 572 (573)
T COG4987 535 GLERMDRIIVLDNGKIIEEGTHAELLA--NNGRYKRLYQL 572 (573)
T ss_pred cHhhcCEEEEEECCeeeecCCHHhhhc--cccHHHHHhcc
Confidence 999999999999999999999999998 68999999763
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-77 Score=779.23 Aligned_cols=564 Identities=26% Similarity=0.334 Sum_probs=496.4
Q ss_pred ccHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 000406 330 VGLFSLFKYSTKLDMILVLLGCIGALINGGALPWYSYFFGNFVNKIANESSDPDKTQMMKDAEKICLLMTVLAAIVMMGA 409 (1560)
Q Consensus 330 ~~~~~l~~y~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 409 (1560)
.++..++++..+..++.++..++++++..++....+++++.++|.+.... + ...+..+++.++++.++..++.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~---~----~~~l~~~~~~~~~~~~~~~~~~ 193 (686)
T TIGR03797 121 LGLRDLLRFALRGARRDLLAILAMGLLGTLLGMLVPIATGILIGTAIPDA---D----RSLLVQIALALLAAAVGAAAFQ 193 (686)
T ss_pred ccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC---C----hhHHHHHHHHHHHHHHHHHHHH
Confidence 34666777743344555566666777777777778889999998876322 1 1122234445555566667788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 410 YLEITCWRLVGERSAQRIRTKYLRAVLRQDIAFFDTEVSTSDIMHGISSDIAQIQEVMGEKVAHFAHNIFTFICGYTVGF 489 (1560)
Q Consensus 410 ~l~~~~~~~~~~~~~~~lr~~l~~~ll~~~l~ffd~~~~~G~i~~r~s~Dv~~i~~~l~~~l~~~i~~i~~~i~~~ii~~ 489 (1560)
+++.++...++.++..++|..++++++++|+.||+.. ++|++++|++ |++.+++.+...+...+.+++.+++.+++++
T Consensus 194 ~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~~-~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~ 271 (686)
T TIGR03797 194 LAQSLAVLRLETRMDASLQAAVWDRLLRLPVSFFRQY-STGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMF 271 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCC-ChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888899999999999999999999999999765 8999999997 7999999999988888888888888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHhHhHHH
Q 000406 490 LRSWKVSLVVLSVTPLMMFCGMAYKAVYVGLTSKEEASYRRAGSVAEQAISSIRTVFSFVAEDHFAVRYAGLLADSIPFG 569 (1560)
Q Consensus 490 ~~s~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIka~~~e~~~~~~~~~~~~~~~~~~ 569 (1560)
.++|.+++++++++|+++++..++.+...+..++..+...+..+.+.|+++|+++||+++.|+.+.++|.+..++..+..
T Consensus 272 ~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~ 351 (686)
T TIGR03797 272 YYSWKLALVAVALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLE 351 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888888888888888888888888889999999999999999999999999999999999888888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 570 AKLGFAKGAGMGVIYLVTYATWALAFWYGSILVARKELSGGAAIACFFGVNVGGRGLALSLSYFAQFAQGTVAATRVFEI 649 (1560)
Q Consensus 570 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~ls~g~~~~~l~~~~~~~~~l~~~~~~~~~~~~a~~a~~Ri~~~ 649 (1560)
.+..........+..++..+..++++|+|++++.+|.+|+|.++++..+...+..++..+...+..+.++..+++|+.++
T Consensus 352 ~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~ 431 (686)
T TIGR03797 352 LSAQRIENLLTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPI 431 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888777777777777778888889999999999999999999999888888899999999999999999999999999
Q ss_pred HccCCCCCCCCCCCCcCCCCcccEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCc
Q 000406 650 IDRVPEIDPYNSEGRKLSSVSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTK 729 (1560)
Q Consensus 650 l~~~~~~~~~~~~~~~~~~~~g~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~ 729 (1560)
++.+++.+. .........+.|+++||+|+|+.. ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++
T Consensus 432 l~~~~e~~~---~~~~~~~~~~~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~ 507 (686)
T TIGR03797 432 LEALPEVDE---AKTDPGKLSGAIEVDRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPES 507 (686)
T ss_pred hcCCccccc---CcCCCCCCCceEEEEEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 986544221 111112235789999999999743 3569999999999999999999999999999999999999999
Q ss_pred cEEEECCeecCCccHHHHhccEEEEecCCcCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCC
Q 000406 730 GLITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRG 809 (1560)
Q Consensus 730 G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Tv~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g 809 (1560)
|+|++||+|+++++.+.+|++|+||||+|++|++||+|||.++.+ .++++++++|+.++++++++++|+|+||.+|++|
T Consensus 508 G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G 586 (686)
T TIGR03797 508 GSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAP-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGG 586 (686)
T ss_pred CEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCC-CCHHHHHHHHHHcCcHHHHHhccccccccccCCC
Confidence 999999999999999999999999999999999999999999988 7899999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCccccccCCEEEEEeCCeEEE
Q 000406 810 TQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVE 889 (1560)
Q Consensus 810 ~~LSgGQrQRialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~D~i~vl~~G~iv~ 889 (1560)
.+|||||||||+|||||+++|+|||||||||+||+++++.+.+.|+++ ++|+|+||||++.+..||+|+||++|+|++
T Consensus 587 ~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~ 664 (686)
T TIGR03797 587 GTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQ 664 (686)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999999886 589999999999999999999999999999
Q ss_pred ecChhhHhhhcchHHHHHHH
Q 000406 890 IGNHRQLLERGGAYHDLVKL 909 (1560)
Q Consensus 890 ~G~~~~l~~~~~~~~~l~~~ 909 (1560)
.|+|+|++++++.|++++..
T Consensus 665 ~G~~~~Ll~~~~~y~~l~~~ 684 (686)
T TIGR03797 665 QGTYDELMAREGLFAQLARR 684 (686)
T ss_pred ECCHHHHHhCCcHHHHHHHh
Confidence 99999999999999998763
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-78 Score=788.83 Aligned_cols=572 Identities=22% Similarity=0.304 Sum_probs=483.8
Q ss_pred ccCcccHHHHHHHhhh-hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHHH
Q 000406 326 VAKPVGLFSLFKYSTK-LDMILVLLGCIGALINGGALPWYSYFFGNFVNKIANESSDPDKTQMMKDAEKICLLMTVLAAI 404 (1560)
Q Consensus 326 ~~~~~~~~~l~~y~~~-~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 404 (1560)
+.+.+++..+.+|.+. ..++..++.+++.++..++.....+|+..|.+.-...... ......++++|++++++
T Consensus 797 ~~G~v~~~vY~~Y~~a~~g~~~~~~~~~~~v~~~~~~~~~~~WLs~W~~~~~~~~~~------~~~~~~~~~vY~~l~~~ 870 (1381)
T KOG0054|consen 797 ETGKVSWSVYKKYIKAAGGFLLVLLILLLFVLTQVLQIASNYWLSYWTDDGEDNGTT------TVSTSFYLGVYALLGVA 870 (1381)
T ss_pred hcCEeeHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccc------CCCcchHHHHHHHHHHH
Confidence 5577888888888876 3344344445566666666666666666665542211100 01234578889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 405 VMMGAYLEITCWRLVGERSAQRIRTKYLRAVLRQDIAFFDTEVSTSDIMHGISSDIAQIQEVMGEKVAHFAHNIFTFICG 484 (1560)
Q Consensus 405 ~~~~~~l~~~~~~~~~~~~~~~lr~~l~~~ll~~~l~ffd~~~~~G~i~~r~s~Dv~~i~~~l~~~l~~~i~~i~~~i~~ 484 (1560)
..++..++.+.+...+.+++.+||+++++++++.||+|||++ |+|+|+|||++|++.+|..+|..+..++..++.+++.
T Consensus 871 ~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdtT-P~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~ 949 (1381)
T KOG0054|consen 871 SSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFDTT-PTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGI 949 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcCCC-CccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999876 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHh
Q 000406 485 YTVGFLRSWKVSLVVLSVTPLMMFCGMAYKAVYVGLTSKEEASYRRAGSVAEQAISSIRTVFSFVAEDHFAVRYAGLLAD 564 (1560)
Q Consensus 485 ~ii~~~~s~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIka~~~e~~~~~~~~~~~~~ 564 (1560)
++++.+..|++.++++.+..+++.++.+|.+..+.+.+.....+++..+|+.|+++|+.|||+|+.+++|.+++....+.
T Consensus 950 ~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~ 1029 (1381)
T KOG0054|consen 950 LVVISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDE 1029 (1381)
T ss_pred HHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 565 SIPFGAKLGFAKGAGMGVIYLVTYATWALAFWYGSILVARKELSGGAAIACFFGVNVGGRGLALSLSYFAQFAQGTVAAT 644 (1560)
Q Consensus 565 ~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~ls~g~~~~~l~~~~~~~~~l~~~~~~~~~~~~a~~a~~ 644 (1560)
..+...-.....-+...-+.++..+..+++..+. .+...+.+++|.+..++.+.+.+...++..++...++++.++|++
T Consensus 1030 ~~~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~-vl~~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVE 1108 (1381)
T KOG0054|consen 1030 NSRAFFLSISANRWLAVRLELLGNLVVLIAALFA-VLLPSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVE 1108 (1381)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhh
Confidence 7643322211111111111222111111111111 111222267899999999999999999999999999999999999
Q ss_pred HHHHHHccCCCCCCCCCC---CCcCCCCcccEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHH
Q 000406 645 RVFEIIDRVPEIDPYNSE---GRKLSSVSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALI 721 (1560)
Q Consensus 645 Ri~~~l~~~~~~~~~~~~---~~~~~~~~g~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll 721 (1560)
||.++.+.++| .+...+ +++.+|..|.|+|+|++.+|... .++|||||||+|+|||+|||||++|||||||+++|
T Consensus 1109 Rv~eY~~~~~E-~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~-lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aL 1186 (1381)
T KOG0054|consen 1109 RVLEYTDIPSE-APLEIEESRPPPSWPSKGEIEFEDLSLRYRPN-LPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILAL 1186 (1381)
T ss_pred HHHHHhcCCCC-CCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCC-CcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHH
Confidence 99999997665 332221 23445778999999999999743 46799999999999999999999999999999999
Q ss_pred hcCCCCCccEEEECCeecCCccHHHHhccEEEEecCCcCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHHHHHhCCCCC
Q 000406 722 ERFYDPTKGLITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGY 801 (1560)
Q Consensus 722 ~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Tv~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~gl 801 (1560)
.|+.+|.+|+|.|||.||.++++..||++++++||||.||+||||.||.+.. +.+|+++|+|++.+++.++++++|.|+
T Consensus 1187 FRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf~-e~sD~~IW~ALe~~~Lk~~v~~~p~~L 1265 (1381)
T KOG0054|consen 1187 FRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPFD-EYSDDEIWEALERCQLKDVVSSLPGGL 1265 (1381)
T ss_pred HHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCccc-ccCHHHHHHHHHHhChHHHHhhCCcCC
Confidence 9999999999999999999999999999999999999999999999998765 468999999999999999999999999
Q ss_pred CcccCCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCccccccCCEEEE
Q 000406 802 DTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKNANTIVV 881 (1560)
Q Consensus 802 ~t~~~~~g~~LSgGQrQRialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~D~i~v 881 (1560)
|+.+.|+|.|+|-||||.+||||||+++++||+|||+||++|++|+..||+.|++.+++||||.|+||++++.+||||+|
T Consensus 1266 d~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlV 1345 (1381)
T KOG0054|consen 1266 DSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLV 1345 (1381)
T ss_pred CceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCeEEEecChhhHhhh-cchHHHHHH
Q 000406 882 LDQGSVVEIGNHRQLLER-GGAYHDLVK 908 (1560)
Q Consensus 882 l~~G~iv~~G~~~~l~~~-~~~~~~l~~ 908 (1560)
||+|+|+|.|+|.+|+++ ++.|+++..
T Consensus 1346 ld~G~v~EfdsP~~Ll~~~~S~f~~~l~ 1373 (1381)
T KOG0054|consen 1346 LDAGRVVEFDSPAELLSDKDSLFSSLLK 1373 (1381)
T ss_pred eeCCeEeecCChHHHHhCCcchHHHHHH
Confidence 999999999999999976 566765544
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-76 Score=776.22 Aligned_cols=565 Identities=26% Similarity=0.397 Sum_probs=492.4
Q ss_pred ccHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 000406 330 VGLFSLFKYSTKLDMILVLLGCIGALINGGALPWYSYFFGNFVNKIANESSDPDKTQMMKDAEKICLLMTVLAAIVMMGA 409 (1560)
Q Consensus 330 ~~~~~l~~y~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 409 (1560)
..+..++++.++.. ..++..++++++..++....+++++.++|.+..... ...+..+++.++++.++..++.
T Consensus 142 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~-------~~~l~~~~~~~~~~~~~~~~~~ 213 (708)
T TIGR01193 142 NSLLKFIPLITRQK-KLIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKM-------MGTLGIISIGLIIAYIIQQILS 213 (708)
T ss_pred chHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-------hHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777666543 344555666666667677778899999998764221 1122223344444555666777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 410 YLEITCWRLVGERSAQRIRTKYLRAVLRQDIAFFDTEVSTSDIMHGISSDIAQIQEVMGEKVAHFAHNIFTFICGYTVGF 489 (1560)
Q Consensus 410 ~l~~~~~~~~~~~~~~~lr~~l~~~ll~~~l~ffd~~~~~G~i~~r~s~Dv~~i~~~l~~~l~~~i~~i~~~i~~~ii~~ 489 (1560)
+++.++..+++.++..++|.+++++++++|+.||+.. ++|++++|++ |++.+.+.+...+..++.+++.+++.+++++
T Consensus 214 ~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~f~~~-~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~ 291 (708)
T TIGR01193 214 YIQIFLLNVLGQRLSIDIILSYIKHLFELPMSFFSTR-RTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLV 291 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCC-chhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888899999999999999999999999999765 8999999997 8999999999888888888888888888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHhHhHHH
Q 000406 490 LRSWKVSLVVLSVTPLMMFCGMAYKAVYVGLTSKEEASYRRAGSVAEQAISSIRTVFSFVAEDHFAVRYAGLLADSIPFG 569 (1560)
Q Consensus 490 ~~s~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIka~~~e~~~~~~~~~~~~~~~~~~ 569 (1560)
+++|.+++++++++|+++++..++.+..++..++..+...+..+.+.|+++|+++||++++|+.+.++|.+..++..+..
T Consensus 292 ~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~ 371 (708)
T TIGR01193 292 RQNMLLFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKS 371 (708)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988888888888888888888899999999999999999999999999999999988887777
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 570 AKLGFAKGAGMGVIYLVTYATWALAFWYGSILVARKELSGGAAIACFFGVNVGGRGLALSLSYFAQFAQGTVAATRVFEI 649 (1560)
Q Consensus 570 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~ls~g~~~~~l~~~~~~~~~l~~~~~~~~~~~~a~~a~~Ri~~~ 649 (1560)
.+..........+..++..+..++++|+|++++.+|.+|+|.++++..+...+..|+..+...+..+..+..+++|+.++
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~ 451 (708)
T TIGR01193 372 FKYQKADQGQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEV 451 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777666666666666667778888999999999999999999999888888899999999999999999999999999
Q ss_pred HccCCCCCCCCCCCCcCCCCcccEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCc
Q 000406 650 IDRVPEIDPYNSEGRKLSSVSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTK 729 (1560)
Q Consensus 650 l~~~~~~~~~~~~~~~~~~~~g~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~ 729 (1560)
++.+++.+.. ......+...+.|+++||+|+|+. ++++|+|+||+|++||++||+|+||||||||+++|+|+|+|++
T Consensus 452 l~~~~e~~~~-~~~~~~~~~~~~I~~~~vsf~y~~--~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~ 528 (708)
T TIGR01193 452 YLVDSEFINK-KKRTELNNLNGDIVINDVSYSYGY--GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARS 528 (708)
T ss_pred HcCCCccccc-ccccCCCCCCCcEEEEEEEEEcCC--CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCC
Confidence 9865543221 110112234578999999999973 3469999999999999999999999999999999999999999
Q ss_pred cEEEECCeecCCccHHHHhccEEEEecCCcCccccHHHHHhcC-CCCCCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCC
Q 000406 730 GLITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMG-KENATMKEAVAACKAASAHSFISELPLGYDTQVGDR 808 (1560)
Q Consensus 730 G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Tv~eNi~~g-~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~ 808 (1560)
|+|++||+|+++++.+.+|++|+||||+|+||++||+|||.++ .++.++++++++|+.+++++++.++|.|+||.+|++
T Consensus 529 G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~ 608 (708)
T TIGR01193 529 GEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEE 608 (708)
T ss_pred cEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCC
Confidence 9999999999999999999999999999999999999999998 467889999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCccccccCCEEEEEeCCeEE
Q 000406 809 GTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVV 888 (1560)
Q Consensus 809 g~~LSgGQrQRialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~D~i~vl~~G~iv 888 (1560)
|.+|||||||||+||||++++|+|||||||||+||+++++.+.+.|++. +++|+|+||||++.+..||+|++|++|+++
T Consensus 609 G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~ 687 (708)
T TIGR01193 609 GSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLDHGKII 687 (708)
T ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999999885 689999999999999999999999999999
Q ss_pred EecChhhHhhhcchHHHHHH
Q 000406 889 EIGNHRQLLERGGAYHDLVK 908 (1560)
Q Consensus 889 ~~G~~~~l~~~~~~~~~l~~ 908 (1560)
+.|+|+|++++++.|+++++
T Consensus 688 ~~G~~~~L~~~~~~y~~l~~ 707 (708)
T TIGR01193 688 EQGSHDELLDRNGFYASLIH 707 (708)
T ss_pred EECCHHHHHhcCCcHHHHhh
Confidence 99999999998999998864
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-76 Score=775.21 Aligned_cols=564 Identities=25% Similarity=0.353 Sum_probs=490.8
Q ss_pred cHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 000406 331 GLFSLFKYSTKLDMILVLLGCIGALINGGALPWYSYFFGNFVNKIANESSDPDKTQMMKDAEKICLLMTVLAAIVMMGAY 410 (1560)
Q Consensus 331 ~~~~l~~y~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 410 (1560)
.+..++++.++. +..++..++++++..++....+++.+.++|....... ...+..+++.++++.++..++.+
T Consensus 141 ~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~-------~~~l~~~~~~~~~~~~~~~~~~~ 212 (710)
T TIGR03796 141 LLRALWRRLRGS-RGALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGR-------QDWLRPLLLGMGLTALLQGVLTW 212 (710)
T ss_pred cHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-------hhHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555443 3334455555566666666677889999987664221 01122234444455566677788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 411 LEITCWRLVGERSAQRIRTKYLRAVLRQDIAFFDTEVSTSDIMHGISSDIAQIQEVMGEKVAHFAHNIFTFICGYTVGFL 490 (1560)
Q Consensus 411 l~~~~~~~~~~~~~~~lr~~l~~~ll~~~l~ffd~~~~~G~i~~r~s~Dv~~i~~~l~~~l~~~i~~i~~~i~~~ii~~~ 490 (1560)
++.++...++.++..++|.+++++++++|+++|+.. ++|++++|++.| +.+++++...+..++.+++.+++.+++++.
T Consensus 213 ~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~-~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~ 290 (710)
T TIGR03796 213 LQLYYLRRLQIKLAVGMSARFLWHILRLPVRFFAQR-HAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLL 290 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCC-cccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888899999999999999999999999999765 899999999988 789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHhHhHHHh
Q 000406 491 RSWKVSLVVLSVTPLMMFCGMAYKAVYVGLTSKEEASYRRAGSVAEQAISSIRTVFSFVAEDHFAVRYAGLLADSIPFGA 570 (1560)
Q Consensus 491 ~s~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIka~~~e~~~~~~~~~~~~~~~~~~~ 570 (1560)
++|++++++++++|+.+++..++.+...+..++..+...+..+.+.|.++|+++||++++|+.+.++|.+...+..+...
T Consensus 291 ~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~ 370 (710)
T TIGR03796 291 YDPVLTLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQ 370 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988888888888888888888888899999999999999999999999999999999888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 571 KLGFAKGAGMGVIYLVTYATWALAFWYGSILVARKELSGGAAIACFFGVNVGGRGLALSLSYFAQFAQGTVAATRVFEII 650 (1560)
Q Consensus 571 k~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~ls~g~~~~~l~~~~~~~~~l~~~~~~~~~~~~a~~a~~Ri~~~l 650 (1560)
+..........+..++..+..++++|+|++++.+|.+++|.++++..+...+..++..+...+..+.++..+++|+.+++
T Consensus 371 ~~~~~~~~~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il 450 (710)
T TIGR03796 371 ELGVLTQILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVL 450 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777778888899999999999999999999998888888999999999999999999999999999
Q ss_pred ccCCCCCCCCC---C-CCcC-CCCcccEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCC
Q 000406 651 DRVPEIDPYNS---E-GRKL-SSVSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFY 725 (1560)
Q Consensus 651 ~~~~~~~~~~~---~-~~~~-~~~~g~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~ 725 (1560)
+.+++.+.... . .... +...+.|+++||+|+|+.. ++++|+|+||+|++||++||||+||||||||+++|+|+|
T Consensus 451 ~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~ 529 (710)
T TIGR03796 451 RNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPL-EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLY 529 (710)
T ss_pred cCCCccccccccccccccccCCCCCCeEEEEEEEEecCCC-CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 87554321110 0 0111 2335789999999999853 356999999999999999999999999999999999999
Q ss_pred CCCccEEEECCeecCCccHHHHhccEEEEecCCcCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHHHHHhCCCCCCccc
Q 000406 726 DPTKGLITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQV 805 (1560)
Q Consensus 726 ~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Tv~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~ 805 (1560)
+|++|+|.+||+|+++++...+|++|+||||+|++|++||+|||.++.++.++++++++|+.+++++++.++|+|++|.+
T Consensus 530 ~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i 609 (710)
T TIGR03796 530 QPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAEL 609 (710)
T ss_pred CCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCccccee
Confidence 99999999999999999999999999999999999999999999999888899999999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCccccccCCEEEEEeCC
Q 000406 806 GDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQG 885 (1560)
Q Consensus 806 ~~~g~~LSgGQrQRialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~D~i~vl~~G 885 (1560)
|++|.+|||||||||+|||||+++|+|||||||||+||+++++.+.+.|++ .++|+|+||||++++..||+|++|++|
T Consensus 610 ~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~~D~Iivl~~G 687 (710)
T TIGR03796 610 AEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERG 687 (710)
T ss_pred ccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEeCC
Confidence 999999999999999999999999999999999999999999999999986 589999999999999999999999999
Q ss_pred eEEEecChhhHhhhcchHHHHH
Q 000406 886 SVVEIGNHRQLLERGGAYHDLV 907 (1560)
Q Consensus 886 ~iv~~G~~~~l~~~~~~~~~l~ 907 (1560)
+|++.|+|+||+++++.|++++
T Consensus 688 ~i~~~G~~~~Ll~~~~~y~~l~ 709 (710)
T TIGR03796 688 KVVQRGTHEELWAVGGAYARLI 709 (710)
T ss_pred EEEEecCHHHHHHcCCcHHHHh
Confidence 9999999999999999998876
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-76 Score=758.91 Aligned_cols=563 Identities=32% Similarity=0.469 Sum_probs=496.4
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 981 EIWKLQRPEFAMIIFGFILGMHAGAILSIFPLILGQALQVYFDDTASTLRRDVRYLSLALVGLGFGCIIFMTGQQGFCGW 1060 (1560)
Q Consensus 981 ~l~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 1060 (1560)
.++++.++.++.++++++++++..++....|+++..+++..+... .......+.+.++++.++..++.++..++...
T Consensus 4 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 80 (571)
T TIGR02203 4 RLWSYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGR---DRSVLWWVPLVVIGLAVLRGICSFVSTYLLSW 80 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC---chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666667777777788888888787888888877776554321 11122333444556666777788888889999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCcccccCChHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 1061 AGTKLTMRVRELLFRSILKQEPGWFDFEENSTGVLVSRLSIDSISFRSVLGDRFSVLLMGLSSAAVGLGVSLVLNWRLTL 1140 (1560)
Q Consensus 1061 ~~~~~~~~Lr~~l~~~ll~~~~~ffd~~~~~~G~il~R~s~Di~~i~~~l~~~l~~~l~~~~~~i~~l~~~~~~~~~l~l 1140 (1560)
.+.++...+|..+++++++.|..+|+ +.+.|++++|++.|++.+++++...+..++.+++.++++++++++++|.+++
T Consensus 81 ~~~~~~~~lr~~l~~~~~~~~~~~~~--~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~ 158 (571)
T TIGR02203 81 VSNKVVRDIRVRMFEKLLGLPVSFFD--RQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTL 158 (571)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHhC--CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 99999999999999999999999986 6889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH-HhcchhhhhhhHHHHHHHHHHHhcchhHHHhccchHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 000406 1141 VAAALTPFTLGASYLSLI-INVGPKIDNSSYAKASSIASGAVSNIRTVTTFSAQEQIINSFDKALSEPKKKSVKRSQILG 1219 (1560)
Q Consensus 1141 v~l~~ipl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 1219 (1560)
++++++|+.++..++... .....+...+...+..+.+.|.++|+++||+++.++.+.++|++..++..+...+..+...
T Consensus 159 i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (571)
T TIGR02203 159 IVVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGS 238 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998888887766554433 3333333456677888999999999999999999999999999999999999999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccCCccc
Q 000406 1220 LTLGFSQGAMYVAYTFTLWFGAYLVKQGHASFGVVYKIFLILVLSSFSVGQLAGLAPDTSMAATAIPAVLQITKRKPLID 1299 (1560)
Q Consensus 1220 ~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~s~~ri~~i~~~~~~~~ 1299 (1560)
....+...+..+..++++++|++++..|.+++|.++++..+...+..|+..+...+..+..+..+.+|+.++++.+++.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~ 318 (571)
T TIGR02203 239 ISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKD 318 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 88888888888888999999999999999999999999999999999999999999999999999999999987655432
Q ss_pred cccccccCCCCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEe
Q 000406 1300 NVKGRKLERSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVD 1379 (1560)
Q Consensus 1300 ~~~~~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvd 1379 (1560)
..... . ....+.|+++||+|+|++. +.++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|++||+|
T Consensus 319 ~~~~~-~-~~~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~ 395 (571)
T TIGR02203 319 TGTRA-I-ERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHD 395 (571)
T ss_pred CCCCC-C-CCCCCeEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEe
Confidence 21111 1 1123469999999999754 3579999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHhhceEEEcCCCCCCCccHHHHHhcCCC-CCCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHH
Q 000406 1380 LREINVKWLRKQTALVGQEPALFAGTIRDNIALGNP-KASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQK 1458 (1560)
Q Consensus 1380 i~~i~l~~LR~~I~~VpQdp~LF~gTIreNL~~g~~-~~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQr 1458 (1560)
+++++.+++|++++||||||+||+|||||||.++++ +.++++++++++.+++++++.++|+||||+|||+|.+||||||
T Consensus 396 i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqr 475 (571)
T TIGR02203 396 LADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQR 475 (571)
T ss_pred HHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHH
Confidence 999999999999999999999999999999999986 7999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHHHhhcCEEEEEeCCEEEEecCHHHHH
Q 000406 1459 QRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETLL 1538 (1560)
Q Consensus 1459 QRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlsti~~aDrIlVLd~G~IvE~Gt~~eLl 1538 (1560)
||||||||++++|+|||||||||+||.+|++.|.+.|++..+++|+|+||||++.+..||+|++|++|+++|.|+|++|+
T Consensus 476 QRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~ 555 (571)
T TIGR02203 476 QRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELL 555 (571)
T ss_pred HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 99999999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred hhccChHHHHHHHHh
Q 000406 1539 ASHLNGVYASLVRAE 1553 (1560)
Q Consensus 1539 ~~~~~g~y~~l~~~q 1553 (1560)
+ .++.|++++..+
T Consensus 556 ~--~~~~~~~~~~~~ 568 (571)
T TIGR02203 556 A--RNGLYAQLHNMQ 568 (571)
T ss_pred H--cCCHHHHHHHHh
Confidence 8 468999998866
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-77 Score=701.81 Aligned_cols=543 Identities=28% Similarity=0.376 Sum_probs=456.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhccch-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 000406 1004 GAILSIFPLILGQALQVYFDDTAS-TLRRDVRYLSLALVGLGFGCIIFMTGQQGFCGWAGTKLTMRVRELLFRSILKQEP 1082 (1560)
Q Consensus 1004 ~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~ll~~~~ 1082 (1560)
..+....|.++...++..-+.... .........+..|....++..++..++...+.++.+++..+....+|++++++..
T Consensus 43 K~l~v~vp~~~~~~id~l~~~~~~~a~~~~~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~ 122 (591)
T KOG0057|consen 43 KILNVQVPFIFKLIIDGLNDADGNPAVLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDL 122 (591)
T ss_pred hHhheehHHHHHHHHhhhhhcccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 445556677777666655321111 1122233455667777788889999999999999999999999999999999999
Q ss_pred CCcccccCChHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000406 1083 GWFDFEENSTGVLVSRLSIDSISFRSVLGDRFSVLLMGLSSAAVGLGVSLV-LNWRLTLVAAALTPFTLGASYLSLIINV 1161 (1560)
Q Consensus 1083 ~ffd~~~~~~G~il~R~s~Di~~i~~~l~~~l~~~l~~~~~~i~~l~~~~~-~~~~l~lv~l~~ipl~~~~~~~~~~~~~ 1161 (1560)
+||- ...+|.+.+.+.+-...+...+...+..++..++.+.+..+.+.+ +.+.++++.+..+..+..+.+.....+-
T Consensus 123 ~~~~--~~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn 200 (591)
T KOG0057|consen 123 SFFL--SRGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWRN 200 (591)
T ss_pred Hhhc--CCCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhHHH
Confidence 9976 688999999888888888877777777766666555544433332 4455555544444443333333333322
Q ss_pred chh-hhhhhHHHHHHHHHHHhcchhHHHhccchHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 1162 GPK-IDNSSYAKASSIASGAVSNIRTVTTFSAQEQIINSFDKALSEPKKKSVKRSQILGLTLGFSQGAMYVAYTFTLWFG 1240 (1560)
Q Consensus 1162 ~~~-~~~~~~~~~~~~~~e~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 1240 (1560)
..+ ....+...+.+.+.+++.+-++||.||.|+...++|+..+.++.+...+..++.++....-..++.+..+.+..++
T Consensus 201 ~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~~~~im~l~ 280 (591)
T KOG0057|consen 201 RFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVALTFIMVLG 280 (591)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 3366777788899999999999999999999999999999999999999999988888777777777788888888
Q ss_pred HHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccCCccccccccccCCCCCccEEEEEEE
Q 000406 1241 AYLVKQGHASFGVVYKIFLILVLSSFSVGQLAGLAPDTSMAATAIPAVLQITKRKPLIDNVKGRKLERSKPLGIELKMVT 1320 (1560)
Q Consensus 1241 ~~lv~~g~~s~g~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~s~~ri~~i~~~~~~~~~~~~~~~~~~~~~~I~~~nVs 1320 (1560)
..-+..|.+++|.+..+..++.....++..+...+.++.++.+-+..++...+......+. ..+....++.|+|+||+
T Consensus 281 ~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~~~--~~~i~~~~~~I~F~dV~ 358 (591)
T KOG0057|consen 281 SNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQEA--ALPIELFGGSIEFDDVH 358 (591)
T ss_pred hhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhhhc--cCCcccCCCcEEEEeeE
Confidence 8888999999999999999999999999999999999999988888887765433222211 11222235679999999
Q ss_pred EEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhhceEEEcCCCC
Q 000406 1321 FTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQEPA 1400 (1560)
Q Consensus 1321 f~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~~I~~VpQdp~ 1400 (1560)
|.|++ ++++|+++||+|++||||||||+|||||||++++|+||++ ++|+|+|||+|+++++++.+|+.|||||||..
T Consensus 359 f~y~~--k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~ 435 (591)
T KOG0057|consen 359 FSYGP--KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSV 435 (591)
T ss_pred EEeCC--CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCccc
Confidence 99973 4569999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred CCCccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCC
Q 000406 1401 LFAGTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEAS 1480 (1560)
Q Consensus 1401 LF~gTIreNL~~g~~~~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLARALLr~p~ILILDEaT 1480 (1560)
||++||.+||.+|+|.++++|+.++||++++||.|.++|+||+|.|||+|..||||||||++||||+||+|||++|||||
T Consensus 436 LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaT 515 (591)
T KOG0057|consen 436 LFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEAT 515 (591)
T ss_pred ccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHhcCCceEEEEecChHHHhhcCEEEEEeCCEEEEecCHHHHHhhccChHHHHHHHHhhh
Q 000406 1481 SALDLESEKHVQDALRKVSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETLLASHLNGVYASLVRAETE 1555 (1560)
Q Consensus 1481 SaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlsti~~aDrIlVLd~G~IvE~Gt~~eLl~~~~~g~y~~l~~~q~~ 1555 (1560)
|+||.+||+.|.+.|+....++|+|+|+||++++++||+|++|++|+|+|.|+|+||++ +.+.|+++|..|..
T Consensus 516 S~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~--~s~~~~~~w~~~~~ 588 (591)
T KOG0057|consen 516 SALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLA--PSELYADLWTTQTS 588 (591)
T ss_pred cccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhh--hhhHHHHHhccccc
Confidence 99999999999999999889999999999999999999999999999999999999998 68999999988854
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-79 Score=697.66 Aligned_cols=500 Identities=29% Similarity=0.394 Sum_probs=422.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccCChHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 1048 IIFMTGQQGFCGWAGTKLTMRVRELLFRSILKQEPGWFDFEENSTGVLVSRLSIDSISFRSVLGDRFSVLLMGLSSAAVG 1127 (1560)
Q Consensus 1048 ~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~ll~~~~~ffd~~~~~~G~il~R~s~Di~~i~~~l~~~l~~~l~~~~~~i~~ 1127 (1560)
.++..++.++...+.+-..+++...+|+|+..++..|.- .+.+|+++.-+.+....+. ++.....++...++-.+++
T Consensus 273 G~~~nlRtfLWi~VqQyttR~ie~~lfrHlh~LSlrwHL--~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va 349 (790)
T KOG0056|consen 273 GFLNNLRTFLWIPVQQYTTREIETELFRHLHNLSLRWHL--NRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVA 349 (790)
T ss_pred cchhhhheeEEEEhhHhHHHHHHHHHHHHHHhhceeeee--cccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhh
Confidence 344445555545567778889999999999999999964 6889998887766655544 3333333333333333333
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch-hhhhhhHHHHHHHHHHHhcchhHHHhccchHHHHHHHHHHHh
Q 000406 1128 LGV-SLVLNWRLTLVAAALTPFTLGASYLSLIINVGP-KIDNSSYAKASSIASGAVSNIRTVTTFSAQEQIINSFDKALS 1205 (1560)
Q Consensus 1128 l~~-~~~~~~~l~lv~l~~ipl~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~e~l~gi~tIraf~~e~~~~~~~~~~~~ 1205 (1560)
++. ...++|+++++++++..+.+.........+... ++...+..+......+++-+.+|+|-|++|++..++|+++..
T Consensus 350 ~vYF~~~Fn~wFgLIVfl~m~lY~~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil 429 (790)
T KOG0056|consen 350 MVYFFIKFNIWFGLIVFLMMLLYCYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAIL 429 (790)
T ss_pred hhhhhhhHhHHHHHHHHHHHHHHhheeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHH
Confidence 333 234689999888777666554332221111111 122334445556677899999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 000406 1206 EPKKKSVKRSQILGLTLGFSQGAMYVAYTFTLWFGAYLVKQGHASFGVVYKIFLILVLSSFSVGQLAGLAPDTSMAATAI 1285 (1560)
Q Consensus 1206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~s~ 1285 (1560)
++++..++...-..+....-..+..+...+-..+.+++|..+..++|+++.+..++.....|+.....++..++.....+
T Consensus 430 ~Yqk~E~ks~~sLnfLN~~Qn~Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDm 509 (790)
T KOG0056|consen 430 KYQKQEWKSLASLNFLNIVQNGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDM 509 (790)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhH
Confidence 99998888777666666666666666666666777888889999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCccccccccccCCCCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcc
Q 000406 1286 PAVLQITKRKPLIDNVKGRKLERSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRF 1365 (1560)
Q Consensus 1286 ~ri~~i~~~~~~~~~~~~~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl 1365 (1560)
|+++++++++++..+.++..+-....|.|+|+||+|.|. +++++|+||||++.||+++|+|||||+||||++++|+||
T Consensus 510 Enmfdllkee~eVvd~P~a~pl~~~~G~i~fsnvtF~Y~--p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRf 587 (790)
T KOG0056|consen 510 ENMFDLLKEEPEVVDLPGAPPLKVTQGKIEFSNVTFAYD--PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRF 587 (790)
T ss_pred HHHHHHhhcCchhhcCCCCCCccccCCeEEEEEeEEecC--CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHH
Confidence 999999998888766555444445578899999999996 457899999999999999999999999999999999999
Q ss_pred cCCCccEEEECCEecCCCCHHHHhhceEEEcCCCCCCCccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCcccc
Q 000406 1366 YDPNQGKVMIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQ 1445 (1560)
Q Consensus 1366 ~~p~~G~I~IdGvdi~~i~l~~LR~~I~~VpQdp~LF~gTIreNL~~g~~~~sd~eI~~al~~a~l~~~I~~Lp~Gldt~ 1445 (1560)
||.++|.|.|||+||+.+..+.||++||+||||..||+.||..||.+++|.+++||+.+|++.+++||-|..+|+||+|.
T Consensus 588 fdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~ 667 (790)
T KOG0056|consen 588 FDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTR 667 (790)
T ss_pred hhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHHHhhcCEEEEEeC
Q 000406 1446 VGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIREANMIAVVRD 1525 (1560)
Q Consensus 1446 Vge~G~~LSGGQrQRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlsti~~aDrIlVLd~ 1525 (1560)
|||+|-.||||||||+||||++||+|.|++||||||+||..||++||.+|.++++++|.|+|||||+||-+||.|+|+++
T Consensus 668 VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~ 747 (790)
T KOG0056|consen 668 VGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVISN 747 (790)
T ss_pred hhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEecCHHHHHhhccChHHHHHHHHh
Q 000406 1526 GAVVEYGSHETLLASHLNGVYASLVRAE 1553 (1560)
Q Consensus 1526 G~IvE~Gt~~eLl~~~~~g~y~~l~~~q 1553 (1560)
|+|+|.|+|+||+++ .+|.|++||+.|
T Consensus 748 G~IvErG~HeeLl~r-dgG~Ya~MWq~q 774 (790)
T KOG0056|consen 748 GRIVERGRHEELLKR-DGGAYADMWQAQ 774 (790)
T ss_pred CeEeecCcHHHHHhc-cCCcHHHHHHHH
Confidence 999999999999983 599999999665
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-76 Score=818.88 Aligned_cols=569 Identities=21% Similarity=0.279 Sum_probs=473.3
Q ss_pred CcccHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHHHHHH
Q 000406 328 KPVGLFSLFKYSTKLDMILVLLGCIGALINGGALPWYSYFFGNFVNKIANESSDPDKTQMMKDAEKICLLMTVLAAIVMM 407 (1560)
Q Consensus 328 ~~~~~~~l~~y~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 407 (1560)
+.+++..++.|++...++..++.+++.++..++..+.++|++.|.+...... .. .....++++|++++++..+
T Consensus 948 g~v~~~~y~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~-~~------~~~~~~~~iy~~l~i~~~~ 1020 (1522)
T TIGR00957 948 GQVELSVYWDYMKAIGLFITFLSIFLFVCNHVSALASNYWLSLWTDDPMVNG-TQ------NNTSLRLSVYGALGILQGF 1020 (1522)
T ss_pred CcccHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccC-CC------CCcchHHHHHHHHHHHHHH
Confidence 4455555555554433443334444444455555566667776665321100 00 1112345577777888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 408 GAYLEITCWRLVGERSAQRIRTKYLRAVLRQDIAFFDTEVSTSDIMHGISSDIAQIQEVMGEKVAHFAHNIFTFICGYTV 487 (1560)
Q Consensus 408 ~~~l~~~~~~~~~~~~~~~lr~~l~~~ll~~~l~ffd~~~~~G~i~~r~s~Dv~~i~~~l~~~l~~~i~~i~~~i~~~ii 487 (1560)
+.++..+++.+.+.++..++|.+++++++++|+.|||.. ++|+++||+++|++.+++.++..+..++..++.+++.+++
T Consensus 1021 ~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~-~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~ 1099 (1522)
T TIGR00957 1021 AVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFERT-PSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIV 1099 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHhccC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888889999999999999999999999999865 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHhHhH
Q 000406 488 GFLRSWKVSLVVLSVTPLMMFCGMAYKAVYVGLTSKEEASYRRAGSVAEQAISSIRTVFSFVAEDHFAVRYAGLLADSIP 567 (1560)
Q Consensus 488 ~~~~s~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIka~~~e~~~~~~~~~~~~~~~~ 567 (1560)
+++.+|++++++++++++++++.++|.+..+.+.+......++..+++.|+++|+++||+|++|+.+.+++.+..+...+
T Consensus 1100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~ 1179 (1522)
T TIGR00957 1100 ILLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQK 1179 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 99999988877777777788888888888888888888888999999999999999999999999999999988887766
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 568 FGAKLGFAKGAGMGVIYLVTYATWALAFWYGSILVA-RKELSGGAAIACFFGVNVGGRGLALSLSYFAQFAQGTVAATRV 646 (1560)
Q Consensus 568 ~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~-~g~ls~g~~~~~l~~~~~~~~~l~~~~~~~~~~~~a~~a~~Ri 646 (1560)
..........+......++.. +++++.+.+.+. .+.+++|.+++++.+...+..++..+...+..++++++|++|+
T Consensus 1180 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi 1256 (1522)
T TIGR00957 1180 AYYPSIVANRWLAVRLECVGN---CIVLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERL 1256 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554443333333333332222 233344444443 5789999999999888888899999999999999999999999
Q ss_pred HHHHccCCCCCCCCCCCCc--CCCCcccEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcC
Q 000406 647 FEIIDRVPEIDPYNSEGRK--LSSVSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERF 724 (1560)
Q Consensus 647 ~~~l~~~~~~~~~~~~~~~--~~~~~g~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~ 724 (1560)
.++++.+++.+........ ..+..|.|+|+||+|+|+.+. +++|+||||+|+|||++||||+||||||||+++|+|+
T Consensus 1257 ~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~-~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl 1335 (1522)
T TIGR00957 1257 KEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDL-DLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRI 1335 (1522)
T ss_pred HHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCCC-cccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 9999765543211011111 124568999999999997532 4699999999999999999999999999999999999
Q ss_pred CCCCccEEEECCeecCCccHHHHhccEEEEecCCcCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHHHHHhCCCCCCcc
Q 000406 725 YDPTKGLITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQ 804 (1560)
Q Consensus 725 ~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Tv~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~ 804 (1560)
++|++|+|+|||+|+++++.+.+|++|++|||||.||+|||||||.+.. ..++++++++++.++++++|.++|+||||.
T Consensus 1336 ~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~-~~sdeei~~al~~a~l~~~I~~lp~GLdt~ 1414 (1522)
T TIGR00957 1336 NESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFS-QYSDEEVWWALELAHLKTFVSALPDKLDHE 1414 (1522)
T ss_pred ccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCccc-CCCHHHHHHHHHHcCcHHHHhhCccCCCce
Confidence 9999999999999999999999999999999999999999999998543 578999999999999999999999999999
Q ss_pred cCCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCccccccCCEEEEEeC
Q 000406 805 VGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQ 884 (1560)
Q Consensus 805 ~~~~g~~LSgGQrQRialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~D~i~vl~~ 884 (1560)
+|++|.+||||||||+||||||+++|+|||||||||+||+++++.|++.|++..+++|+|+||||++++.+||||+||++
T Consensus 1415 v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~ 1494 (1522)
T TIGR00957 1415 CAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDK 1494 (1522)
T ss_pred ecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999899999999999999999999999999
Q ss_pred CeEEEecChhhHhhhcchHHHHHHH
Q 000406 885 GSVVEIGNHRQLLERGGAYHDLVKL 909 (1560)
Q Consensus 885 G~iv~~G~~~~l~~~~~~~~~l~~~ 909 (1560)
|+|+|.|+|+||+++++.|+++++.
T Consensus 1495 G~IvE~G~~~eLl~~~~~f~~l~~~ 1519 (1522)
T TIGR00957 1495 GEVAEFGAPSNLLQQRGIFYSMAKD 1519 (1522)
T ss_pred CEEEEECCHHHHHhCCCHHHHHHHH
Confidence 9999999999999988999998864
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-75 Score=752.68 Aligned_cols=562 Identities=30% Similarity=0.414 Sum_probs=474.7
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 980 SEIWKLQRPEFAMIIFGFILGMHAGAILSIFPLILGQALQVYFDDTASTLRRDVRYLSLALVGLGFGCIIFMTGQQGFCG 1059 (1560)
Q Consensus 980 ~~l~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 1059 (1560)
++++++.++.+..+.+.+++.++..++....|+++..+++..... .....+.+.++++.++..+..+....+..
T Consensus 8 ~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (588)
T PRK13657 8 ARVLQYLGAEKRLGILLAVANVLLAAATFAEPILFGRIIDAISGK------GDIFPLLAAWAGFGLFNIIAGVLVARHAD 81 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------ccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666667777777777777777777888888777755432 11112222223333333333333444444
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCcccccCChHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 1060 WAGTKLTMRVRELLFRSILKQEPGWFDFEENSTGVLVSRLSIDSISFRSVLGDRFSVLLMGLSSAAVGLGVSLVLNWRLT 1139 (1560)
Q Consensus 1060 ~~~~~~~~~Lr~~l~~~ll~~~~~ffd~~~~~~G~il~R~s~Di~~i~~~l~~~l~~~l~~~~~~i~~l~~~~~~~~~l~ 1139 (1560)
+...++...++..+|+++++.|+.+|+ +.+.|++++|+++|++.+.+.+...+..++..++..++.+++++.++|.++
T Consensus 82 ~~~~~~~~~l~~~l~~~l~~~~~~~~~--~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 159 (588)
T PRK13657 82 RLAHRRRLAVLTEYFERIIQLPLAWHS--QRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLS 159 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHC--cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556666777999999999999987 789999999999999999998888888888888888888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHH-HHhcchhhhhhhHHHHHHHHHHHhcchhHHHhccchHHHHHHHHHHHhhhHHHHHHHHHHH
Q 000406 1140 LVAAALTPFTLGASYLSL-IINVGPKIDNSSYAKASSIASGAVSNIRTVTTFSAQEQIINSFDKALSEPKKKSVKRSQIL 1218 (1560)
Q Consensus 1140 lv~l~~ipl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 1218 (1560)
+++++++|+.+++..+.. ......+.......+..+.+.|.++|+++||.|+.++.+.+++.+..++..+...+..++.
T Consensus 160 l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (588)
T PRK13657 160 LVLVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWW 239 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988888777665544333 2222222334566778899999999999999999999999999999999999988888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccCCcc
Q 000406 1219 GLTLGFSQGAMYVAYTFTLWFGAYLVKQGHASFGVVYKIFLILVLSSFSVGQLAGLAPDTSMAATAIPAVLQITKRKPLI 1298 (1560)
Q Consensus 1219 ~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~s~~ri~~i~~~~~~~ 1298 (1560)
.+...+.+++..+..++++++|++++..|.+++|.+++++.+...+..++..+...+..+..+..+++|+.++.+.+++.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~ 319 (588)
T PRK13657 240 ALASVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDV 319 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 88888888888888889999999999999999999999999999999999999999999999999999999998765432
Q ss_pred ccccccccCCCCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCE
Q 000406 1299 DNVKGRKLERSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGV 1378 (1560)
Q Consensus 1299 ~~~~~~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGv 1378 (1560)
+............+.|+++||+|+|+++ +++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.+||+
T Consensus 320 ~~~~~~~~~~~~~~~I~~~~vsf~y~~~--~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~ 397 (588)
T PRK13657 320 RDPPGAIDLGRVKGAVEFDDVSFSYDNS--RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGT 397 (588)
T ss_pred CCCCCCCCcCCCCCeEEEEEEEEEeCCC--CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCE
Confidence 2111111111123469999999999743 35999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCHHHHhhceEEEcCCCCCCCccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHH
Q 000406 1379 DLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQK 1458 (1560)
Q Consensus 1379 di~~i~l~~LR~~I~~VpQdp~LF~gTIreNL~~g~~~~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQr 1458 (1560)
|+.+++.+.+|++|+||||||.||+|||||||++++|+.++++++++++.+++++++.++|+|+||.++++|.+||||||
T Consensus 398 ~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~ 477 (588)
T PRK13657 398 DIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGER 477 (588)
T ss_pred EhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHH
Confidence 99999999999999999999999999999999999888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHHHhhcCEEEEEeCCEEEEecCHHHHH
Q 000406 1459 QRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETLL 1538 (1560)
Q Consensus 1459 QRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlsti~~aDrIlVLd~G~IvE~Gt~~eLl 1538 (1560)
|||||||||+++|+|||||||||+||++||+.|++.|++..+++|+|+||||++.++.||+|++|++|+++|.|+|++|+
T Consensus 478 QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~ 557 (588)
T PRK13657 478 QRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELV 557 (588)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999999888899999999999999999999999999999999999999
Q ss_pred hhccChHHHHHHHHh
Q 000406 1539 ASHLNGVYASLVRAE 1553 (1560)
Q Consensus 1539 ~~~~~g~y~~l~~~q 1553 (1560)
+ +++.|++|+..+
T Consensus 558 ~--~~~~y~~l~~~~ 570 (588)
T PRK13657 558 A--RGGRFAALLRAQ 570 (588)
T ss_pred H--CCChHHHHHHHh
Confidence 8 579999999876
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-75 Score=745.00 Aligned_cols=567 Identities=21% Similarity=0.297 Sum_probs=483.1
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 332 LFSLFKYSTKLDMILVLLGCIGALINGGALPWYSYFFGNFVNKIANESSDPDKTQMMKDAEKICLLMTVLAAIVMMGAYL 411 (1560)
Q Consensus 332 ~~~l~~y~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l 411 (1560)
+.++++|+++ .++.++++++++++..++....+++++++++.......... ... .....+..+.+++++..++.++
T Consensus 4 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~ 79 (574)
T PRK11160 4 LLPFLKLYKR-HWFMLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGL-YSF--NYMLPAAGVRGAAIGRTAGRYG 79 (574)
T ss_pred hHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch-hhH--HHHhHHHHHHHHHHHHHHHHHH
Confidence 3456666654 34445667777777777777777888998886542110000 000 0111222344455666777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 412 EITCWRLVGERSAQRIRTKYLRAVLRQDIAFFDTEVSTSDIMHGISSDIAQIQEVMGEKVAHFAHNIFTFICGYTVGFLR 491 (1560)
Q Consensus 412 ~~~~~~~~~~~~~~~lr~~l~~~ll~~~l~ffd~~~~~G~i~~r~s~Dv~~i~~~l~~~l~~~i~~i~~~i~~~ii~~~~ 491 (1560)
+.++....+.++..++|.+++++++++|+.+|+.. ++|++++|+++|++.+++++...+..++..++.+++.+++++++
T Consensus 80 ~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~-~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 158 (574)
T PRK11160 80 ERLVSHDATFRVLTHLRVFTFSKLLPLSPAGLARY-RQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFF 158 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccChHhhccC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888889999999999999999999999999765 89999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHhHhHHHh
Q 000406 492 SWKVSLVVLSVTPLMMF-CGMAYKAVYVGLTSKEEASYRRAGSVAEQAISSIRTVFSFVAEDHFAVRYAGLLADSIPFGA 570 (1560)
Q Consensus 492 s~~l~lv~l~~~pl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIka~~~e~~~~~~~~~~~~~~~~~~~ 570 (1560)
+|.+++++++++|++++ +..++.+..++..++.++...+..+.+.|.++|+++||+|+.|+.+.++|.+..++..+...
T Consensus 159 ~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~ 238 (574)
T PRK11160 159 DLTLALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQR 238 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHH
Confidence 99999988877777654 34566667677777788888899999999999999999999999999999999999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 571 KLGFAKGAGMGVIYLVTYATWALAFWYGSILVARKELSGGAAIACFFGV-NVGGRGLALSLSYFAQFAQGTVAATRVFEI 649 (1560)
Q Consensus 571 k~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~ls~g~~~~~l~~~-~~~~~~l~~~~~~~~~~~~a~~a~~Ri~~~ 649 (1560)
+.....+....+..++..+..++++++|++++ .|.++.|.+++++.+. .....++..+...+..+.++..+++|+.++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~-~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~l 317 (574)
T PRK11160 239 RQANLTGLSQALMILANGLTVVLMLWLAAGGV-GGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEI 317 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888887777777777777788889998884 7889999988876554 333456777778889999999999999999
Q ss_pred HccCCCCCCCCCCCCcCCCCcccEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCc
Q 000406 650 IDRVPEIDPYNSEGRKLSSVSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTK 729 (1560)
Q Consensus 650 l~~~~~~~~~~~~~~~~~~~~g~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~ 729 (1560)
++.+++.+... .....+..+.|+++||+|+|++. ++++|+|+||+|+|||++||+||||||||||+++|+|+++|++
T Consensus 318 l~~~~~~~~~~--~~~~~~~~~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~ 394 (574)
T PRK11160 318 TEQKPEVTFPT--TSTAAADQVSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQ 394 (574)
T ss_pred HhCCCCCCCCc--ccCCCCCCCeEEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 98755422111 11112235689999999999753 2469999999999999999999999999999999999999999
Q ss_pred cEEEECCeecCCccHHHHhccEEEEecCCcCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCC
Q 000406 730 GLITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRG 809 (1560)
Q Consensus 730 G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Tv~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g 809 (1560)
|+|++||+++++++.+.+|++|+||||+|++|++||+|||.++.++.++++++++++.+++++++++ |+|+||.+|++|
T Consensus 395 G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g 473 (574)
T PRK11160 395 GEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGG 473 (574)
T ss_pred ceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCC
Confidence 9999999999999999999999999999999999999999999888899999999999999999999 999999999999
Q ss_pred CCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCccccccCCEEEEEeCCeEEE
Q 000406 810 TQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVE 889 (1560)
Q Consensus 810 ~~LSgGQrQRialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~D~i~vl~~G~iv~ 889 (1560)
.+|||||||||+||||++++|+|||||||||+||+++++.+.+.|+++.+++|+|+||||++++..||+|++|++|++++
T Consensus 474 ~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~ 553 (574)
T PRK11160 474 RQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIE 553 (574)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEE
Confidence 99999999999999999999999999999999999999999999999888999999999999999999999999999999
Q ss_pred ecChhhHhhhcchHHHHHH
Q 000406 890 IGNHRQLLERGGAYHDLVK 908 (1560)
Q Consensus 890 ~G~~~~l~~~~~~~~~l~~ 908 (1560)
.|+|+|++++++.|+++++
T Consensus 554 ~g~~~~l~~~~g~y~~l~~ 572 (574)
T PRK11160 554 QGTHQELLAQQGRYYQLKQ 572 (574)
T ss_pred eCCHHHHHhcCcHHHHHHh
Confidence 9999999999999999875
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-75 Score=762.28 Aligned_cols=556 Identities=24% Similarity=0.349 Sum_probs=485.4
Q ss_pred cHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 000406 331 GLFSLFKYSTKLDMILVLLGCIGALINGGALPWYSYFFGNFVNKIANESSDPDKTQMMKDAEKICLLMTVLAAIVMMGAY 410 (1560)
Q Consensus 331 ~~~~l~~y~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 410 (1560)
....++++.++. +..+...++++++..++....|++.+.++|....... ...+..+++.++++.++..++.+
T Consensus 134 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~-------~~~l~~~~~~~~~~~~~~~~~~~ 205 (694)
T TIGR03375 134 PKHWFWSTLKES-WPLYRDVLIASLLINLLALASPLFVMNVYDRVVPNQA-------FETLWVLAIGVALAIVFDFVLKT 205 (694)
T ss_pred cchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc-------HhHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555443 3334455555566666667777888999987653221 11122233344444555667788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 411 LEITCWRLVGERSAQRIRTKYLRAVLRQDIAFFDTEVSTSDIMHGISSDIAQIQEVMGEKVAHFAHNIFTFICGYTVGFL 490 (1560)
Q Consensus 411 l~~~~~~~~~~~~~~~lr~~l~~~ll~~~l~ffd~~~~~G~i~~r~s~Dv~~i~~~l~~~l~~~i~~i~~~i~~~ii~~~ 490 (1560)
++.++..+.+.++..++|..++++++++|+.| +.. ++|++++|+ +|++.+++.+...+...+.+++.+++.++++++
T Consensus 206 ~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~-~~~-~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~ 282 (694)
T TIGR03375 206 LRSYFLDVAGKKADLILSAKLFERVLGLRMEA-RPA-SVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAI 282 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-CCC-ChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 88888899999999999999999999999998 444 899999999 799999999998888888888888888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHhHhHHHh
Q 000406 491 RSWKVSLVVLSVTPLMMFCGMAYKAVYVGLTSKEEASYRRAGSVAEQAISSIRTVFSFVAEDHFAVRYAGLLADSIPFGA 570 (1560)
Q Consensus 491 ~s~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIka~~~e~~~~~~~~~~~~~~~~~~~ 570 (1560)
++|.+++++++++|+++++..++.+...+..++..+...+..+.+.|+++|+++||+|++|+.+.++|.+..++..+...
T Consensus 283 ~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~ 362 (694)
T TIGR03375 283 IGGPLVWVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGL 362 (694)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888888888888888888889999999999999999999999999999999999999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 571 KLGFAKGAGMGVIYLVTYATWALAFWYGSILVARKELSGGAAIACFFGVNVGGRGLALSLSYFAQFAQGTVAATRVFEII 650 (1560)
Q Consensus 571 k~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~ls~g~~~~~l~~~~~~~~~l~~~~~~~~~~~~a~~a~~Ri~~~l 650 (1560)
+..........+..++..+..++++|+|++++.+|.+|+|.++++..+...+..++..+...+.++..+..+++|+.+++
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il 442 (694)
T TIGR03375 363 KSRFLSNLATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELM 442 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888887777777777777888899999999999999999999999888888999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCcCCCCcccEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCcc
Q 000406 651 DRVPEIDPYNSEGRKLSSVSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKG 730 (1560)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~g~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G 730 (1560)
+.+++.++. ......+...+.|+|+||+|+|++. ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|
T Consensus 443 ~~~~e~~~~-~~~~~~~~~~~~I~~~~vsf~Y~~~-~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G 520 (694)
T TIGR03375 443 QLPVERPEG-TRFLHRPRLQGEIEFRNVSFAYPGQ-ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEG 520 (694)
T ss_pred cCCCCCCCC-CCCCCCCCccceEEEEEEEEEeCCC-CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 875542211 1111112345789999999999743 35699999999999999999999999999999999999999999
Q ss_pred EEEECCeecCCccHHHHhccEEEEecCCcCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCC
Q 000406 731 LITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGT 810 (1560)
Q Consensus 731 ~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Tv~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~ 810 (1560)
+|.+||+|+++++...+|++|+||||+|++|++||+|||.++.++.++++++++++.++++++++.+|+|++|.+|++|.
T Consensus 521 ~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~ 600 (694)
T TIGR03375 521 SVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGR 600 (694)
T ss_pred eEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCC
Confidence 99999999999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCccccccCCEEEEEeCCeEEEe
Q 000406 811 QLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEI 890 (1560)
Q Consensus 811 ~LSgGQrQRialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~D~i~vl~~G~iv~~ 890 (1560)
+|||||||||+||||++++|+|||||||||+||+++++.+++.|+++.+++|+|+||||++++..||+|++|++|+++|.
T Consensus 601 ~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~ 680 (694)
T TIGR03375 601 SLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVAD 680 (694)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEee
Confidence 99999999999999999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred cChhhHhhh
Q 000406 891 GNHRQLLER 899 (1560)
Q Consensus 891 G~~~~l~~~ 899 (1560)
|+|+||+++
T Consensus 681 G~~~eLl~~ 689 (694)
T TIGR03375 681 GPKDQVLEA 689 (694)
T ss_pred CCHHHHHHH
Confidence 999999864
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-76 Score=745.10 Aligned_cols=520 Identities=23% Similarity=0.290 Sum_probs=445.4
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 000406 982 IWKLQRPEFAMIIFGFILGMHAGAILSIFPLILGQALQVYFDDTASTLRRDVRYL--SLALVGLGFGCIIFMTGQQGFCG 1059 (1560)
Q Consensus 982 l~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~ 1059 (1560)
++++.+++++.++++++++++...+....|++++.+++....... ....+ ...++++.++..++.++..++..
T Consensus 4 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (529)
T TIGR02868 4 ILPLLQPRTRRLVVAILLGALALGSAVALLGVSAWLISRAAEMPP-----VLYLSVAAVAVRAFGIGRAVFRYLERLVGH 78 (529)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666667777777777777777778888877765542211 11111 11122334455666777788888
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCcccccCChHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 1060 WAGTKLTMRVRELLFRSILKQEPGWFDFEENSTGVLVSRLSIDSISFRSVLGDRFSVLLMGLSSAAVGLGVSLVLNWRLT 1139 (1560)
Q Consensus 1060 ~~~~~~~~~Lr~~l~~~ll~~~~~ffd~~~~~~G~il~R~s~Di~~i~~~l~~~l~~~l~~~~~~i~~l~~~~~~~~~l~ 1139 (1560)
..+.++..++|..+|++++++|+.||+ ++++|++++|+++|++.+++.+...+..++..++..+++++++++++|.++
T Consensus 79 ~~~~~~~~~lr~~~~~~ll~~~~~~~~--~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 156 (529)
T TIGR02868 79 DAALRSLGRLRVRVYDRLARLALAGRR--RFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAA 156 (529)
T ss_pred HHHHHHHHHHHHHHHHHhhccCccccc--cCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 889999999999999999999999987 789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-HHHHHHhcc-hhhhhhhHHHHHHHHHHHhcchhHHHhccchHHHHHHHHHHHhhhHHHHHHHHHH
Q 000406 1140 LVAAALTPFTLGAS-YLSLIINVG-PKIDNSSYAKASSIASGAVSNIRTVTTFSAQEQIINSFDKALSEPKKKSVKRSQI 1217 (1560)
Q Consensus 1140 lv~l~~ipl~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~e~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~ 1217 (1560)
+++++.+|++.++. ++....... .+..+....+..+.+.|.++|+++||+|+.++.+.++|++..++..+...+...+
T Consensus 157 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (529)
T TIGR02868 157 LVLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARA 236 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99887777665443 333332222 2233556678889999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccCCc
Q 000406 1218 LGLTLGFSQGAMYVAYTFTLWFGAYLVKQGHASFGVVYKIFLILVLSSFSVGQLAGLAPDTSMAATAIPAVLQITKRKPL 1297 (1560)
Q Consensus 1218 ~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~s~~ri~~i~~~~~~ 1297 (1560)
.+....+...+..+..++++++|++++..|.++.|.+.+++.+...+..++..+...+..+..+..+.+|+.++++.+++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~ 316 (529)
T TIGR02868 237 TGLGAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGP 316 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 88888888888888888889999999999999999999999999999999999999999999999999999999976654
Q ss_pred ccccccc--ccCCCCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEE
Q 000406 1298 IDNVKGR--KLERSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMI 1375 (1560)
Q Consensus 1298 ~~~~~~~--~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~I 1375 (1560)
.++.... ....+..+.|+|+||+|+|+++ +++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++
T Consensus 317 ~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~--~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i 394 (529)
T TIGR02868 317 RPEGVVPAAGALGLGKPTLELRDLSFGYPGS--PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTL 394 (529)
T ss_pred cCCCCCCCCcccCCCCceEEEEEEEEecCCC--CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 3221111 0111223569999999999753 35999999999999999999999999999999999999999999999
Q ss_pred CCEecCCCCHHHHhhceEEEcCCCCCCCccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCCh
Q 000406 1376 EGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSG 1455 (1560)
Q Consensus 1376 dGvdi~~i~l~~LR~~I~~VpQdp~LF~gTIreNL~~g~~~~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSG 1455 (1560)
||+|++++ .+++|++|+||||||+||+|||||||++|+|+++++++++|++.++++++|.+||+||||+|||+|.+|||
T Consensus 395 ~g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSG 473 (529)
T TIGR02868 395 DGVSVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSG 473 (529)
T ss_pred CCEEhhhH-HHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCH
Confidence 99999999 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecCh
Q 000406 1456 GQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRL 1511 (1560)
Q Consensus 1456 GQrQRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRl 1511 (1560)
||||||||||||+++|+|||||||||+||++||+.|++.|++..+++|+|+||||+
T Consensus 474 GQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 474 GERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 99999999999999999999999999999999999999999988999999999996
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-75 Score=747.03 Aligned_cols=568 Identities=33% Similarity=0.503 Sum_probs=486.5
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 979 LSEIWKLQRPEFAMIIFGFILGMHAGAILSIFPLILGQALQVYFDDTASTLRRDVRYLSLALVGLGFGCIIFMTGQQGFC 1058 (1560)
Q Consensus 979 ~~~l~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 1058 (1560)
.+.++++.++.++.+.+.+++.++...+....|+++..+++..+.... ......+..+++++.++..++.+++.++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (576)
T TIGR02204 6 LAALWPFVRPYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKDS---SGLLNRYFAFLLVVALVLALGTAARFYLV 82 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccccc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666677777777777777777778888888888776442211 11122223333444444556667778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCcccccCChHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 1059 GWAGTKLTMRVRELLFRSILKQEPGWFDFEENSTGVLVSRLSIDSISFRSVLGDRFSVLLMGLSSAAVGLGVSLVLNWRL 1138 (1560)
Q Consensus 1059 ~~~~~~~~~~Lr~~l~~~ll~~~~~ffd~~~~~~G~il~R~s~Di~~i~~~l~~~l~~~l~~~~~~i~~l~~~~~~~~~l 1138 (1560)
..++.++...+|..+++++++.|+.+|+ +.+.|++++|+++|++.+++++...+..++.+++.+++++++++.++|.+
T Consensus 83 ~~~~~~~~~~lr~~l~~~l~~~~~~~~~--~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 160 (576)
T TIGR02204 83 TWLGERVVADIRRAVFAHLISLSPSFFD--KNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKL 160 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHc--cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 8899999999999999999999999986 68899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHhcchhhhhhhHHHHHHHHHHHhcchhHHHhccchHHHHHHHHHHHhhhHHHHHHHHHH
Q 000406 1139 TLVAAALTPFTLGASYLS-LIINVGPKIDNSSYAKASSIASGAVSNIRTVTTFSAQEQIINSFDKALSEPKKKSVKRSQI 1217 (1560)
Q Consensus 1139 ~lv~l~~ipl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~ 1217 (1560)
++++++.+|++++..++. .......+.......+..+.+.|.++|+++||+++.++.+.++|++..++..+...+....
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (576)
T TIGR02204 161 TSLVLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRT 240 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998888888776555433 3333333333556677789999999999999999999999999999999988888777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccCCc
Q 000406 1218 LGLTLGFSQGAMYVAYTFTLWFGAYLVKQGHASFGVVYKIFLILVLSSFSVGQLAGLAPDTSMAATAIPAVLQITKRKPL 1297 (1560)
Q Consensus 1218 ~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~s~~ri~~i~~~~~~ 1297 (1560)
......+...+..+..++++++|++++..|.+++|.++++..+......|+..+...+.++..+..+++|+.++++.+++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~ 320 (576)
T TIGR02204 241 RALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPD 320 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 77766666666667777888899999999999999999999999999999999999999999999999999999876543
Q ss_pred ccccc-ccccCCCCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEEC
Q 000406 1298 IDNVK-GRKLERSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIE 1376 (1560)
Q Consensus 1298 ~~~~~-~~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~Id 1376 (1560)
.+... ....+.+..+.|+++||+|+|++++++++|+|+||+|+|||++||+|+||||||||+++|+|+|+|++|+|.+|
T Consensus 321 ~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~ 400 (576)
T TIGR02204 321 IKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLD 400 (576)
T ss_pred CCCCCCCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEEC
Confidence 22111 11111122346999999999986433579999999999999999999999999999999999999999999999
Q ss_pred CEecCCCCHHHHhhceEEEcCCCCCCCccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChH
Q 000406 1377 GVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGG 1456 (1560)
Q Consensus 1377 Gvdi~~i~l~~LR~~I~~VpQdp~LF~gTIreNL~~g~~~~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGG 1456 (1560)
|+|+++++.+++|++|+||||||++|+|||||||.+++|+.++++++++++.+++.+++.++|+|+||+++|+|.+||||
T Consensus 401 g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgG 480 (576)
T TIGR02204 401 GVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGG 480 (576)
T ss_pred CEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHH
Confidence 99999999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHHHhhcCEEEEEeCCEEEEecCHHH
Q 000406 1457 QKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHET 1536 (1560)
Q Consensus 1457 QrQRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlsti~~aDrIlVLd~G~IvE~Gt~~e 1536 (1560)
||||||||||++++|+|||||||||+||++|++.|.+.|++..+++|+|+||||++.+..||+|++|++|+++|.|+|++
T Consensus 481 q~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~ 560 (576)
T TIGR02204 481 QRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAE 560 (576)
T ss_pred HHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHH
Confidence 99999999999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred HHhhccChHHHHHHHHh
Q 000406 1537 LLASHLNGVYASLVRAE 1553 (1560)
Q Consensus 1537 Ll~~~~~g~y~~l~~~q 1553 (1560)
|++ +++.|++|++.|
T Consensus 561 l~~--~~~~~~~l~~~~ 575 (576)
T TIGR02204 561 LIA--KGGLYARLARLQ 575 (576)
T ss_pred HHH--cCChHHHHHhhc
Confidence 997 579999998765
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-75 Score=741.68 Aligned_cols=563 Identities=26% Similarity=0.366 Sum_probs=478.0
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 980 SEIWKLQRPEFAMIIFGFILGMHAGAILSIFPLILGQALQVYFDDTASTLRRDVRYLSLALVGLGFGCIIFMTGQQGFCG 1059 (1560)
Q Consensus 980 ~~l~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 1059 (1560)
++++++.+++++.++++++++++..++....|++++.+++...... ....+.+.++++.++..+..++..++..
T Consensus 8 ~~l~~~l~~~k~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (585)
T TIGR01192 8 VRALSYLNVHKNRVLLIVIANITLAAITIAEPILFGRIIDAISSKS------DVLPTLALWAGFGVFNTIAYVLVAREAD 81 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777778888888888888888888889999988887655321 1111111222222233333334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCcccccCChHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 1060 WAGTKLTMRVRELLFRSILKQEPGWFDFEENSTGVLVSRLSIDSISFRSVLGDRFSVLLMGLSSAAVGLGVSLVLNWRLT 1139 (1560)
Q Consensus 1060 ~~~~~~~~~Lr~~l~~~ll~~~~~ffd~~~~~~G~il~R~s~Di~~i~~~l~~~l~~~l~~~~~~i~~l~~~~~~~~~l~ 1139 (1560)
....++..++|..+|++++++|+.||+ ++++|++++|+++|++.+..++...+..++..+++.++.+++++.++|.++
T Consensus 82 ~~~~~~~~~lr~~~~~~l~~l~~~~~~--~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 159 (585)
T TIGR01192 82 RLAHGRRATLLTEAFGRIISMPLSWHQ--QRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLS 159 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHhC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566667778999999999999987 688999999999999999999998888888888888888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHH-HHhcchhhhhhhHHHHHHHHHHHhcchhHHHhccchHHHHHHHHHHHhhhHHHHHHHHHHH
Q 000406 1140 LVAAALTPFTLGASYLSL-IINVGPKIDNSSYAKASSIASGAVSNIRTVTTFSAQEQIINSFDKALSEPKKKSVKRSQIL 1218 (1560)
Q Consensus 1140 lv~l~~ipl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 1218 (1560)
+++++++|+++++..+.. ......+.......+..+.+.|+++|+++||+|+.++.+.+++.+..++..+...+..+..
T Consensus 160 li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (585)
T TIGR01192 160 IVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWW 239 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998888887766554433 3322223335566778899999999999999999999999999999999888888877777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccCCcc
Q 000406 1219 GLTLGFSQGAMYVAYTFTLWFGAYLVKQGHASFGVVYKIFLILVLSSFSVGQLAGLAPDTSMAATAIPAVLQITKRKPLI 1298 (1560)
Q Consensus 1219 ~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~s~~ri~~i~~~~~~~ 1298 (1560)
.+...+...+..+..++++++|++++..|.+++|.+++++.+...+..++..+...+.....+..+++|+.++.+.+++.
T Consensus 240 ~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~ 319 (585)
T TIGR01192 240 ALASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQR 319 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence 77777777777788888899999999999999999999999999999999999999999999999999999998765433
Q ss_pred ccccccccCCCCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCE
Q 000406 1299 DNVKGRKLERSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGV 1378 (1560)
Q Consensus 1299 ~~~~~~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGv 1378 (1560)
++...........+.|+++||+|+|++. .++|+|+||+|++||++||||+||||||||+++|+|+++|++|+|.+||+
T Consensus 320 ~~~~~~~~~~~~~~~i~~~~v~~~y~~~--~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~ 397 (585)
T TIGR01192 320 EEPADAPELPNVKGAVEFRHITFEFANS--SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGI 397 (585)
T ss_pred cCCccCCCCCCCCCeEEEEEEEEECCCC--CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCE
Confidence 2111111111123469999999999743 35899999999999999999999999999999999999999999999999
Q ss_pred ecCCCCHHHHhhceEEEcCCCCCCCccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHH
Q 000406 1379 DLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQK 1458 (1560)
Q Consensus 1379 di~~i~l~~LR~~I~~VpQdp~LF~gTIreNL~~g~~~~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQr 1458 (1560)
|+.+++.+.+|++++||||||.+|++||+|||.++.+++++++++++++.+++++++.++|+|+||.+|++|.+||||||
T Consensus 398 ~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~ 477 (585)
T TIGR01192 398 DINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGER 477 (585)
T ss_pred EhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHH
Confidence 99999999999999999999999999999999999888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHHHhhcCEEEEEeCCEEEEecCHHHHH
Q 000406 1459 QRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETLL 1538 (1560)
Q Consensus 1459 QRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlsti~~aDrIlVLd~G~IvE~Gt~~eLl 1538 (1560)
|||+|||||+++|+|||||||||+||+++++.|++.|++..+++|+|+||||++++..||+|++|++|+++|.|+|++|+
T Consensus 478 qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 557 (585)
T TIGR01192 478 QRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELI 557 (585)
T ss_pred HHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred hhccChHHHHHHHHhh
Q 000406 1539 ASHLNGVYASLVRAET 1554 (1560)
Q Consensus 1539 ~~~~~g~y~~l~~~q~ 1554 (1560)
+ ++|.|+++++.+.
T Consensus 558 ~--~~~~y~~l~~~~~ 571 (585)
T TIGR01192 558 Q--KDGRFYKLLRRSG 571 (585)
T ss_pred H--CCChHHHHHHhCc
Confidence 8 5799999998874
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-75 Score=744.49 Aligned_cols=565 Identities=29% Similarity=0.463 Sum_probs=488.8
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 333 FSLFKYSTKLDMILVLLGCIGALINGGALPWYSYFFGNFVNKIANESSDPDKTQMMKDAEKICLLMTVLAAIVMMGAYLE 412 (1560)
Q Consensus 333 ~~l~~y~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~ 412 (1560)
..+++++++..+ .+++.+++.++..++....+++++.+++...... . . ......+.++++++++..++.++.
T Consensus 14 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~--~--~---~~~~~~~~~~~~~~l~~~~~~~~~ 85 (582)
T PRK11176 14 RRLWPTIAPFKA-GLIVAGVALILNAASDTFMLSLLKPLLDDGFGKA--D--R---SVLKWMPLVVIGLMILRGITSFIS 85 (582)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--c--h---hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555554433 3445556666666666777778888887665321 1 0 111222333344556666777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCchhhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 413 ITCWRLVGERSAQRIRTKYLRAVLRQDIAFFDTEVSTSDIMHGISSDIAQIQEVMGEKVAHFAHNIFTFICGYTVGFLRS 492 (1560)
Q Consensus 413 ~~~~~~~~~~~~~~lr~~l~~~ll~~~l~ffd~~~~~G~i~~r~s~Dv~~i~~~l~~~l~~~i~~i~~~i~~~ii~~~~s 492 (1560)
.++..+++.++..++|..+++++++.|..+|+.. ++|++++|+++|++.+.+.+...+..++..++.+++.++++++++
T Consensus 86 ~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~-~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 164 (582)
T PRK11176 86 SYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQ-STGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYS 164 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788889999999999999999999999999755 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHhHhHHHhHH
Q 000406 493 WKVSLVVLSVTPLMMFCGMAYKAVYVGLTSKEEASYRRAGSVAEQAISSIRTVFSFVAEDHFAVRYAGLLADSIPFGAKL 572 (1560)
Q Consensus 493 ~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIka~~~e~~~~~~~~~~~~~~~~~~~k~ 572 (1560)
|.+++++++++|+.+++...+.+..++..++.++...+..+.+.|.++|+++||+|+.|+.+.++|.+..++..+...+.
T Consensus 165 ~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (582)
T PRK11176 165 WQLSLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKM 244 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888888888888888888888888888999999999999999999999999999999999988888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 000406 573 GFAKGAGMGVIYLVTYATWALAFWYGSILVARKELSGGAAIACFFGVNVGGRGLALSLSYFAQFAQGTVAATRVFEIIDR 652 (1560)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~ls~g~~~~~l~~~~~~~~~l~~~~~~~~~~~~a~~a~~Ri~~~l~~ 652 (1560)
.........+..++..+..++++++|++++..|.+++|.+++++.++..+..++..+...+..+..+..+.+|+.++++.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~ 324 (582)
T PRK11176 245 VSASSISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDL 324 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 77777777777777777777788899999999999999999888887888889999999999999999999999999986
Q ss_pred CCCCCCCCCCCCcCCCCcccEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEE
Q 000406 653 VPEIDPYNSEGRKLSSVSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732 (1560)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~g~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I 732 (1560)
+++.+. .....++..+.|+++||+|+|++. ++++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|
T Consensus 325 ~~~~~~---~~~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I 400 (582)
T PRK11176 325 EQEKDE---GKRVIERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEI 400 (582)
T ss_pred CCcCCC---CCcCCCCCCCeEEEEEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceE
Confidence 433111 111122334679999999999753 3569999999999999999999999999999999999999999999
Q ss_pred EECCeecCCccHHHHhccEEEEecCCcCccccHHHHHhcCCCC-CCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCC
Q 000406 733 TLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKEN-ATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQ 811 (1560)
Q Consensus 733 ~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Tv~eNi~~g~~~-~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~ 811 (1560)
++||+|+++++.+.+|++|+||||+|.+|++||+|||.++.++ .++++++++++.++++++++++|+|+||.+|++|.+
T Consensus 401 ~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~ 480 (582)
T PRK11176 401 LLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVL 480 (582)
T ss_pred EECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCc
Confidence 9999999999999999999999999999999999999998754 689999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCccccccCCEEEEEeCCeEEEec
Q 000406 812 LSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIG 891 (1560)
Q Consensus 812 LSgGQrQRialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~D~i~vl~~G~iv~~G 891 (1560)
|||||||||+|||||+++|+|||||||||+||+++++.+.+.|.++.+++|+|+||||++.++.||+|++|++|+++|.|
T Consensus 481 LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g 560 (582)
T PRK11176 481 LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERG 560 (582)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999999999987899999999999999999999999999999999
Q ss_pred ChhhHhhhcchHHHHHHHH
Q 000406 892 NHRQLLERGGAYHDLVKLA 910 (1560)
Q Consensus 892 ~~~~l~~~~~~~~~l~~~~ 910 (1560)
+|++++++++.|++++..+
T Consensus 561 ~~~~l~~~~~~y~~l~~~~ 579 (582)
T PRK11176 561 THAELLAQNGVYAQLHKMQ 579 (582)
T ss_pred CHHHHHhCCChHHHHHHHH
Confidence 9999999999999998643
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-75 Score=692.53 Aligned_cols=551 Identities=26% Similarity=0.358 Sum_probs=488.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 350 GCIGALINGGALPWYSYFFGNFVNKIANESSDPDKTQMMKDAEKICLLMTVLAAIVMMGAYLEITCWRLVGERSAQRIRT 429 (1560)
Q Consensus 350 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~lr~ 429 (1560)
..+++.+.+++.....+++...++.+..+. ....+..+++.++++.++..+..+.+.......+.++...||.
T Consensus 5 ~~ll~~l~~i~~i~qa~llA~~l~~l~~~~-------~~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~ 77 (559)
T COG4988 5 SALLAVLSGIAIIAQAALLADILTKLIEGQ-------LFQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQ 77 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666778888887776432 1233445566666677777778888877778889999999999
Q ss_pred HHHHHHHhcCchhhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 430 KYLRAVLRQDIAFFDTEVSTSDIMHGISSDIAQIQEVMGEKVAHFAHNIFTFICGYTVGFLRSWKVSLVVLSVTPLMMFC 509 (1560)
Q Consensus 430 ~l~~~ll~~~l~ffd~~~~~G~i~~r~s~Dv~~i~~~l~~~l~~~i~~i~~~i~~~ii~~~~s~~l~lv~l~~~pl~~~~ 509 (1560)
.+++++.+.+..+-... ++|++.+.+...++.++..+...++.++..++..+..++.+++++|.-++++++++|++.+.
T Consensus 78 ~~l~~l~~~gp~~~~~~-~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlf 156 (559)
T COG4988 78 LVLDKLAKLGPAFIAQK-PAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLF 156 (559)
T ss_pred HHHHHHHhCChhhhcCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 99999999999988644 99999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHhHhHHHhHHHHHHHHHHHHHHHHHHH
Q 000406 510 GMAYKAVYVGLTSKEEASYRRAGSVAEQAISSIRTVFSFVAEDHFAVRYAGLLADSIPFGAKLGFAKGAGMGVIYLVTYA 589 (1560)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIka~~~e~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~ 589 (1560)
...+....++..+++...+..+.+++.+.++|+.|+|.|+..+...+++.+..++.++..++..+..-....++.++.++
T Consensus 157 Milvg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~l 236 (559)
T COG4988 157 MILVGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYL 236 (559)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999998888888888888888888
Q ss_pred HHHHHHHHHHHHHhc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCcCCC
Q 000406 590 TWALAFWYGSILVAR-KELSGGAAIACFFGVNVGGRGLALSLSYFAQFAQGTVAATRVFEIIDRVPEIDPYNSEGRKLSS 668 (1560)
Q Consensus 590 ~~~~~~~~g~~lv~~-g~ls~g~~~~~l~~~~~~~~~l~~~~~~~~~~~~a~~a~~Ri~~~l~~~~~~~~~~~~~~~~~~ 668 (1560)
..+++..+.+..... |.++....+.++....-+..|+..+.+.|..-.++.++.++++.+++.+++..+..........
T Consensus 237 siAlvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~ 316 (559)
T COG4988 237 SIALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANE 316 (559)
T ss_pred HHHHHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccC
Confidence 887766555555555 7999988888888888888999999999999999999999999999875543221111111122
Q ss_pred CcccEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHHHh
Q 000406 669 VSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLR 748 (1560)
Q Consensus 669 ~~g~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr 748 (1560)
....|+++|++|.|++. +++++|+||++++|+++||||+||||||||+++|+|+++|++|+|.+||+++++++.+.+|
T Consensus 317 ~~~ei~~~~l~~~y~~g--~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~ 394 (559)
T COG4988 317 PPIEISLENLSFRYPDG--KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWR 394 (559)
T ss_pred CCceeeecceEEecCCC--CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHH
Confidence 23345566999999854 3789999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEecCCcCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHHhcc
Q 000406 749 TQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIK 828 (1560)
Q Consensus 749 ~~i~~v~Q~~~lf~~Tv~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARAl~~ 828 (1560)
+++++|+|+|++|++||||||.+++++.++++++++++.+++.+++.. |+|+||.+||+|.+|||||+|||+|||||++
T Consensus 395 k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~ 473 (559)
T COG4988 395 KQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLS 473 (559)
T ss_pred hHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCccccccCCEEEEEeCCeEEEecChhhHhhhcchHHHHHH
Q 000406 829 DPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLERGGAYHDLVK 908 (1560)
Q Consensus 829 ~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~D~i~vl~~G~iv~~G~~~~l~~~~~~~~~l~~ 908 (1560)
+++++|||||||+||.++|+.|.+.|.++.+++|||+||||++.+.+||+|+||++|+++|.|+|++|.++++.|++++.
T Consensus 474 ~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~~~~y~~l~~ 553 (559)
T COG4988 474 PASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEKQGLYANLLK 553 (559)
T ss_pred CCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhcCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred HHH
Q 000406 909 LAS 911 (1560)
Q Consensus 909 ~~~ 911 (1560)
.+.
T Consensus 554 ~q~ 556 (559)
T COG4988 554 QQE 556 (559)
T ss_pred HHh
Confidence 654
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-74 Score=752.68 Aligned_cols=567 Identities=28% Similarity=0.412 Sum_probs=494.8
Q ss_pred ccHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 000406 330 VGLFSLFKYSTKLDMILVLLGCIGALINGGALPWYSYFFGNFVNKIANESSDPDKTQMMKDAEKICLLMTVLAAIVMMGA 409 (1560)
Q Consensus 330 ~~~~~l~~y~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 409 (1560)
..+..++++.++.. ..+...++++++..++....+++++.++|.+..... ...+..+++.++++.++..++.
T Consensus 125 ~~~~~~~~~~~~~~-~~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~-------~~~l~~l~~~~~~~~~~~~~~~ 196 (694)
T TIGR01846 125 FGFSWFIPAIIRYR-KQFREVLLISLALQLFALVTPLLFQVVIDKVLVHRG-------LSTLSVLALAMLAVAIFEPALG 196 (694)
T ss_pred CcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-------hhHHHHHHHHHHHHHHHHHHHH
Confidence 34555666655433 334445555555666666777889999987763221 1122334444555566677788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 410 YLEITCWRLVGERSAQRIRTKYLRAVLRQDIAFFDTEVSTSDIMHGISSDIAQIQEVMGEKVAHFAHNIFTFICGYTVGF 489 (1560)
Q Consensus 410 ~l~~~~~~~~~~~~~~~lr~~l~~~ll~~~l~ffd~~~~~G~i~~r~s~Dv~~i~~~l~~~l~~~i~~i~~~i~~~ii~~ 489 (1560)
+++.++...++.++..++|.+++++++++|+.||+.. ++|++++|+ +|++.+++++...+..++.+++.+++.+++++
T Consensus 197 ~l~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~f~~~-~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~ 274 (694)
T TIGR01846 197 GLRTYLFAHLTSRIDVELGARLYRHLLGLPLGYFESR-RVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMF 274 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHcCCC-CHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888899999999999999999999999999999766 899999999 69999999998888888888887777788999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHhHhHHH
Q 000406 490 LRSWKVSLVVLSVTPLMMFCGMAYKAVYVGLTSKEEASYRRAGSVAEQAISSIRTVFSFVAEDHFAVRYAGLLADSIPFG 569 (1560)
Q Consensus 490 ~~s~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIka~~~e~~~~~~~~~~~~~~~~~~ 569 (1560)
+++|.+++++++++|+++++..++.+..++...+..+...+..+.+.|+++|+++||+++.|+.+.++|.+..++..+..
T Consensus 275 ~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~ 354 (694)
T TIGR01846 275 FYSPTLTGVVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAAS 354 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHH
Confidence 99999999999888988888888887777777777778888999999999999999999999999999999999888888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 570 AKLGFAKGAGMGVIYLVTYATWALAFWYGSILVARKELSGGAAIACFFGVNVGGRGLALSLSYFAQFAQGTVAATRVFEI 649 (1560)
Q Consensus 570 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~ls~g~~~~~l~~~~~~~~~l~~~~~~~~~~~~a~~a~~Ri~~~ 649 (1560)
.+..........+..++..+..++++|+|++++.+|.+|+|.++++..+...+..|+..+...+..+.++..+++|+.++
T Consensus 355 ~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~ 434 (694)
T TIGR01846 355 FRVTNLGNIAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDI 434 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888877777777777788888889999999999999999999999888888899999999999999999999999999
Q ss_pred HccCCCCCCCCCCCCcCCCCcccEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCc
Q 000406 650 IDRVPEIDPYNSEGRKLSSVSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTK 729 (1560)
Q Consensus 650 l~~~~~~~~~~~~~~~~~~~~g~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~ 729 (1560)
++.+++.+.. .....+...+.|+++||+|+|+.. ++++|+|+||+|++||++||+|+||||||||+++|+|+++|++
T Consensus 435 l~~~~e~~~~--~~~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~ 511 (694)
T TIGR01846 435 LNSPTEPRSA--GLAALPELRGAITFENIRFRYAPD-SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQH 511 (694)
T ss_pred HcCCCCccCC--CCCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 9865442211 111122345789999999999743 3469999999999999999999999999999999999999999
Q ss_pred cEEEECCeecCCccHHHHhccEEEEecCCcCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCC
Q 000406 730 GLITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRG 809 (1560)
Q Consensus 730 G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Tv~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g 809 (1560)
|+|++||+|+++++...+|++|+||+|+|.+|++||+|||.++.++.++++++++|+.+++++++.++|.|++|.++++|
T Consensus 512 G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g 591 (694)
T TIGR01846 512 GQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKG 591 (694)
T ss_pred ceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCC
Confidence 99999999999999999999999999999999999999999998888899999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCccccccCCEEEEEeCCeEEE
Q 000406 810 TQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVE 889 (1560)
Q Consensus 810 ~~LSgGQrQRialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~D~i~vl~~G~iv~ 889 (1560)
.+||||||||++|||||+++|+|||||||||+||+++++.+.+.|+++.+++|+|+||||++.+..||+|++|++|++++
T Consensus 592 ~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~ 671 (694)
T TIGR01846 592 ANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAE 671 (694)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEE
Confidence 99999999999999999999999999999999999999999999999888999999999999999999999999999999
Q ss_pred ecChhhHhhhcchHHHHHHH
Q 000406 890 IGNHRQLLERGGAYHDLVKL 909 (1560)
Q Consensus 890 ~G~~~~l~~~~~~~~~l~~~ 909 (1560)
.|+|++++++++.|+++++.
T Consensus 672 ~g~~~~l~~~~~~y~~l~~~ 691 (694)
T TIGR01846 672 SGRHEELLALQGLYARLWQQ 691 (694)
T ss_pred eCCHHHHHHcCChHHHHHHh
Confidence 99999999999999999864
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-75 Score=801.40 Aligned_cols=569 Identities=21% Similarity=0.264 Sum_probs=444.8
Q ss_pred cCcccHHHHHHHhhhhh-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHHHH
Q 000406 327 AKPVGLFSLFKYSTKLD-MILVLLGCIGALINGGALPWYSYFFGNFVNKIANESSDPDKTQMMKDAEKICLLMTVLAAIV 405 (1560)
Q Consensus 327 ~~~~~~~~l~~y~~~~~-~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 405 (1560)
.+.+++..+.+|.+... ++.+++.+++.++..++..+.++|++.|.+..... . .....+++++++++++.
T Consensus 896 ~g~v~~~vy~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~---~------~~~~~~~~i~~~l~~~~ 966 (1622)
T PLN03130 896 TGVVSWKVLERYKNALGGAWVVMILFLCYVLTEVFRVSSSTWLSEWTDQGTPK---T------HGPLFYNLIYALLSFGQ 966 (1622)
T ss_pred cCccCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC---C------CchhHHHHHHHHHHHHH
Confidence 34556555555554422 23333334444444554555566666666532211 0 11123566677788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 406 MMGAYLEITCWRLVGERSAQRIRTKYLRAVLRQDIAFFDTEVSTSDIMHGISSDIAQIQEVMGEKVAHFAHNIFTFICGY 485 (1560)
Q Consensus 406 ~~~~~l~~~~~~~~~~~~~~~lr~~l~~~ll~~~l~ffd~~~~~G~i~~r~s~Dv~~i~~~l~~~l~~~i~~i~~~i~~~ 485 (1560)
.++.+++.+++.+.+.++..++|.+++++++++|+.|||++ ++|+++||+++|++.+++.++..+..++..++.+++.+
T Consensus 967 ~i~~~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~-~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~ 1045 (1622)
T PLN03130 967 VLVTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHTN-PLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTF 1045 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhccC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888889999999999999999999999999866 99999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHhH
Q 000406 486 TVGFLRSWKVSLVVLSVTPLMMFCGMAYKAVYVGLTSKEEASYRRAGSVAEQAISSIRTVFSFVAEDHFAVRYAGLLADS 565 (1560)
Q Consensus 486 ii~~~~s~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIka~~~e~~~~~~~~~~~~~~ 565 (1560)
+++++++|...++++++..+++.+..++.+..++..+......++..+++.|+++|+++||+|++++.+.+++.+..+..
T Consensus 1046 i~i~~~~~~~~~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~ 1125 (1622)
T PLN03130 1046 VLIGIVSTISLWAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNN 1125 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 88888887554444433333444556666777777777777788899999999999999999999998888877766665
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 566 IPFGAKLGFAKGAGMGVIYLVTYATWALAFWYGSILVARKE-LS-----GGAAIACFFGVNVGGRGLALSLSYFAQFAQG 639 (1560)
Q Consensus 566 ~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~-ls-----~g~~~~~l~~~~~~~~~l~~~~~~~~~~~~a 639 (1560)
.+..........+......++ ..+++++.+...+..+. .. .+.+..++.+...+...+..+...+..++++
T Consensus 1126 ~~~~~~~~~~~~wl~~~l~~~---~~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~ 1202 (1622)
T PLN03130 1126 IRFTLVNMSSNRWLAIRLETL---GGLMIWLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENS 1202 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433222111111111111111 11122222333343321 11 2333333344455556677777888889999
Q ss_pred HHHHHHHHHHHccCCCCCCCCCCC--CcCCCCcccEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHH
Q 000406 640 TVAATRVFEIIDRVPEIDPYNSEG--RKLSSVSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTV 717 (1560)
Q Consensus 640 ~~a~~Ri~~~l~~~~~~~~~~~~~--~~~~~~~g~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL 717 (1560)
+.|++|+.++++.++|.+...... ...++..|.|+|+||+|+|+.. .+++|+||||+|+|||++||||+||||||||
T Consensus 1203 ~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~VL~~is~~I~~GekVaIVGrSGSGKSTL 1281 (1622)
T PLN03130 1203 LNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFEISPSEKVGIVGRTGAGKSSM 1281 (1622)
T ss_pred HHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CCceecceeEEEcCCCEEEEECCCCCCHHHH
Confidence 999999999998655432111111 1112456899999999999643 2469999999999999999999999999999
Q ss_pred HHHHhcCCCCCccEEEECCeecCCccHHHHhccEEEEecCCcCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHHHHHhC
Q 000406 718 FALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISEL 797 (1560)
Q Consensus 718 l~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Tv~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l 797 (1560)
+++|+|+|+|++|+|+|||+|+++++++++|++|++|||||.||+|||||||.++. ..++++++++++.++++++|.++
T Consensus 1282 l~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~-~~tdeei~~Al~~a~l~~~I~~l 1360 (1622)
T PLN03130 1282 LNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFN-EHNDADLWESLERAHLKDVIRRN 1360 (1622)
T ss_pred HHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCC-CCCHHHHHHHHHHcCcHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999986 46899999999999999999999
Q ss_pred CCCCCcccCCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCccccccCC
Q 000406 798 PLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKNAN 877 (1560)
Q Consensus 798 ~~gl~t~~~~~g~~LSgGQrQRialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~D 877 (1560)
|.|+||.+|++|.+|||||||||||||||+++|+|||||||||+||++|++.|++.|++..+++|+|+||||++++.+||
T Consensus 1361 p~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~D 1440 (1622)
T PLN03130 1361 SLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCD 1440 (1622)
T ss_pred ccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999989999999999999999999
Q ss_pred EEEEEeCCeEEEecChhhHhhh-cchHHHHHHHH
Q 000406 878 TIVVLDQGSVVEIGNHRQLLER-GGAYHDLVKLA 910 (1560)
Q Consensus 878 ~i~vl~~G~iv~~G~~~~l~~~-~~~~~~l~~~~ 910 (1560)
||+||++|+|+|.|+|++|+++ ++.|+++++..
T Consensus 1441 rIlVLd~G~IvE~Gt~~eLl~~~~g~f~~L~~~~ 1474 (1622)
T PLN03130 1441 RILVLDAGRVVEFDTPENLLSNEGSAFSKMVQST 1474 (1622)
T ss_pred EEEEEECCEEEEeCCHHHHHhCCCCHHHHHHHHc
Confidence 9999999999999999999986 68999998754
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-74 Score=737.75 Aligned_cols=562 Identities=26% Similarity=0.363 Sum_probs=469.7
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 335 LFKYSTKLDMILVLLGCIGALINGGALPWYSYFFGNFVNKIANESSDPDKTQMMKDAEKICLLMTVLAAIVMMGAYLEIT 414 (1560)
Q Consensus 335 l~~y~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~ 414 (1560)
+++|..+ .+..+++.++++++..++....+++++.++|......... ......++++++++.++..++.+++.+
T Consensus 14 l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (592)
T PRK10790 14 LLAYGSP-WRKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLP-----LGLVAGLAAAYVGLQLLAAGLHYAQSL 87 (592)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc-----hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344333 3344556666777777777788889999998765322110 011111223344444555667777778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCchhhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 415 CWRLVGERSAQRIRTKYLRAVLRQDIAFFDTEVSTSDIMHGISSDIAQIQEVMGEKVAHFAHNIFTFICGYTVGFLRSWK 494 (1560)
Q Consensus 415 ~~~~~~~~~~~~lr~~l~~~ll~~~l~ffd~~~~~G~i~~r~s~Dv~~i~~~l~~~l~~~i~~i~~~i~~~ii~~~~s~~ 494 (1560)
.....+.+...++|.++++++++.|+++|+.. ++|++++|+++|++.+++.+...+..++..++.+++.++++++++|.
T Consensus 88 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~-~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (592)
T PRK10790 88 LFNRAAVGVVQQLRTDVMDAALRQPLSAFDTQ-PVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWR 166 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88889999999999999999999999999765 89999999999999999999999999999999888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHhHhHHHhHHHH
Q 000406 495 VSLVVLSVTPLMMFCGMAYKAVYVGLTSKEEASYRRAGSVAEQAISSIRTVFSFVAEDHFAVRYAGLLADSIPFGAKLGF 574 (1560)
Q Consensus 495 l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIka~~~e~~~~~~~~~~~~~~~~~~~k~~~ 574 (1560)
+++++++++|+++++...+.+......++..+...+....+.|.++|+++||+|+.|+.+.+++.+..++..+...+...
T Consensus 167 l~li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (592)
T PRK10790 167 MALVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLR 246 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888888877777777777777777777778888999999999999999999999999999888776665555544
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 000406 575 AKGAG-MGVIYLVTYATWALAFWYGSILVARKELSGGAAIACFFGVNVGGRGLALSLSYFAQFAQGTVAATRVFEIIDRV 653 (1560)
Q Consensus 575 ~~~~~-~~~~~~~~~~~~~~~~~~g~~lv~~g~ls~g~~~~~l~~~~~~~~~l~~~~~~~~~~~~a~~a~~Ri~~~l~~~ 653 (1560)
..+.. ..+..++..+...++.++++. +..|.++.|.++++..+...+..++..+...+..+.++..+++|+.++++.+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~ 325 (592)
T PRK10790 247 LDGFLLRPLLSLFSALILCGLLMLFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGP 325 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 44332 222222222222222222333 5789999999999988888888899999999999999999999999999864
Q ss_pred CCCCCCCCCCCcCCCCcccEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEE
Q 000406 654 PEIDPYNSEGRKLSSVSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLIT 733 (1560)
Q Consensus 654 ~~~~~~~~~~~~~~~~~g~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~ 733 (1560)
++... . ...+...+.|+++||+|+|+. +.++|+|+||+|++||++||+|+||||||||+++|+|+|+|++|+|.
T Consensus 326 ~~~~~--~--~~~~~~~~~i~~~~v~f~y~~--~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~ 399 (592)
T PRK10790 326 RQQYG--N--DDRPLQSGRIDIDNVSFAYRD--DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIR 399 (592)
T ss_pred CccCC--C--CccCCCCCeEEEEEEEEEeCC--CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEE
Confidence 33111 1 111223467999999999974 24699999999999999999999999999999999999999999999
Q ss_pred ECCeecCCccHHHHhccEEEEecCCcCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCC
Q 000406 734 LDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLS 813 (1560)
Q Consensus 734 i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Tv~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LS 813 (1560)
+||.|+++++.+.+|++|+||||+|.+|++||+|||.++. ..++++++++++.++++++++.+|+|+||.+|++|.+||
T Consensus 400 idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~-~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LS 478 (592)
T PRK10790 400 LDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR-DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLS 478 (592)
T ss_pred ECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCC-CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCC
Confidence 9999999999999999999999999999999999999997 578999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCccccccCCEEEEEeCCeEEEecCh
Q 000406 814 GGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNH 893 (1560)
Q Consensus 814 gGQrQRialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~D~i~vl~~G~iv~~G~~ 893 (1560)
|||||||+|||||+++|+|||||||||+||+++++.+.+.|+++.+++|+|+||||++.+..||+|++|++|++++.|+|
T Consensus 479 GGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~ 558 (592)
T PRK10790 479 VGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTH 558 (592)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCH
Confidence 99999999999999999999999999999999999999999998788999999999999999999999999999999999
Q ss_pred hhHhhhcchHHHHHHHHH
Q 000406 894 RQLLERGGAYHDLVKLAS 911 (1560)
Q Consensus 894 ~~l~~~~~~~~~l~~~~~ 911 (1560)
+|++++++.|+++++.+.
T Consensus 559 ~~L~~~~~~y~~l~~~~~ 576 (592)
T PRK10790 559 QQLLAAQGRYWQMYQLQL 576 (592)
T ss_pred HHHHhCCCHHHHHHHHHh
Confidence 999999999999987653
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-74 Score=738.45 Aligned_cols=541 Identities=27% Similarity=0.386 Sum_probs=463.1
Q ss_pred HHHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Q 000406 1005 AILSIFPLILGQALQVYFDDTASTLRRDVRYLSLALVGLGFGCIIFMTGQQGFCGWAGTKLTMRVRELLFRSILKQEPGW 1084 (1560)
Q Consensus 1005 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~ll~~~~~f 1084 (1560)
++....|++++.+++........ ......+.++++++.++..++.++..++....+.++..++|..+|++++++|+.|
T Consensus 9 ~~~~~~p~~~~~iid~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~ 86 (569)
T PRK10789 9 MLQLIPPKVVGIIVDGVTEQHMT--TGQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEF 86 (569)
T ss_pred HHHHHHHHHHHHHHHHhccCCcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 34455677777777655432111 1112233334444445566667777778888899999999999999999999999
Q ss_pred cccccCChHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcc
Q 000406 1085 FDFEENSTGVLVSRLSIDSISFRSVLGDRFSVLLMGLSSAAVGLGVS-LVLNWRLTLVAAALTPFTLGASYLSL-IINVG 1162 (1560)
Q Consensus 1085 fd~~~~~~G~il~R~s~Di~~i~~~l~~~l~~~l~~~~~~i~~l~~~-~~~~~~l~lv~l~~ipl~~~~~~~~~-~~~~~ 1162 (1560)
|+ ++++|++++|+++|++.++..+...+..++..++..+++++++ ++++|.+++++++++|++++...... .....
T Consensus 87 ~~--~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~ 164 (569)
T PRK10789 87 YL--RHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHER 164 (569)
T ss_pred Hc--CCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87 6899999999999999999888888888777766666665555 57999999998888887766544333 33332
Q ss_pred hhhhhhhHHHHHHHHHHHhcchhHHHhccchHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 1163 PKIDNSSYAKASSIASGAVSNIRTVTTFSAQEQIINSFDKALSEPKKKSVKRSQILGLTLGFSQGAMYVAYTFTLWFGAY 1242 (1560)
Q Consensus 1163 ~~~~~~~~~~~~~~~~e~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 1242 (1560)
.+..+....+..+.+.|.+.|+++||+|+.++.+.++|.+..++..+...+.....+....+...+..+..++++++|++
T Consensus 165 ~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~ 244 (569)
T PRK10789 165 FKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSW 244 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33335566778899999999999999999999999999999999988888888888877777777777778888899999
Q ss_pred HHhcCcccHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccCCccccccccccCCCCCccEEEEEEEEE
Q 000406 1243 LVKQGHASFGVVYKIFLILVLSSFSVGQLAGLAPDTSMAATAIPAVLQITKRKPLIDNVKGRKLERSKPLGIELKMVTFT 1322 (1560)
Q Consensus 1243 lv~~g~~s~g~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~s~~ri~~i~~~~~~~~~~~~~~~~~~~~~~I~~~nVsf~ 1322 (1560)
++..|.+++|.++++..+......|+..+...+..+..+..+.+|+.++++.+++.+... ... ...++.|+++||+|+
T Consensus 245 lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~-~~~-~~~~~~I~~~~v~~~ 322 (569)
T PRK10789 245 MVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGS-EPV-PEGRGELDVNIRQFT 322 (569)
T ss_pred HHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCC-CCC-CCCCCcEEEEEEEEE
Confidence 999999999999999999999999999999999999999999999999987654432211 111 112346999999999
Q ss_pred cCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhhceEEEcCCCCCC
Q 000406 1323 YPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQEPALF 1402 (1560)
Q Consensus 1323 Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~~I~~VpQdp~LF 1402 (1560)
|+.. +.++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.+||+|+++++.+.+|++++||||+|+||
T Consensus 323 y~~~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf 401 (569)
T PRK10789 323 YPQT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLF 401 (569)
T ss_pred CCCC-CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeec
Confidence 9753 346999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCcC
Q 000406 1403 AGTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSA 1482 (1560)
Q Consensus 1403 ~gTIreNL~~g~~~~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLARALLr~p~ILILDEaTSa 1482 (1560)
++||||||+++.++.++++++++++.+++++++.++|+|+||.+|++|.+|||||||||+|||||+++|+|||||||||+
T Consensus 402 ~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~ 481 (569)
T PRK10789 402 SDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSA 481 (569)
T ss_pred cccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccc
Confidence 99999999999888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcCCceEEEEecChHHHhhcCEEEEEeCCEEEEecCHHHHHhhccChHHHHHHHHhh
Q 000406 1483 LDLESEKHVQDALRKVSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETLLASHLNGVYASLVRAET 1554 (1560)
Q Consensus 1483 LD~~Te~~I~~~L~~~~~~~TvI~IAHRlsti~~aDrIlVLd~G~IvE~Gt~~eLl~~~~~g~y~~l~~~q~ 1554 (1560)
||+++++.|++.|++..+++|+|+||||++++..||+|++|++|+|+|.|+|++|++ +++.|++|++.|.
T Consensus 482 LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~--~~~~y~~l~~~~~ 551 (569)
T PRK10789 482 VDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQ--QSGWYRDMYRYQQ 551 (569)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHH--cCChHHHHHHHhh
Confidence 999999999999999888999999999999999999999999999999999999998 5799999998764
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-73 Score=732.79 Aligned_cols=563 Identities=31% Similarity=0.472 Sum_probs=500.9
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 334 SLFKYSTKLDMILVLLGCIGALINGGALPWYSYFFGNFVNKIANESSDPDKTQMMKDAEKICLLMTVLAAIVMMGAYLEI 413 (1560)
Q Consensus 334 ~l~~y~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~ 413 (1560)
.++++.++ .++.++++++++++.+++.+..+++++.+++....... ......++++++++.++..++.++..
T Consensus 4 ~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-------~~~~~~~~~~~~~~~i~~~~~~~~~~ 75 (571)
T TIGR02203 4 RLWSYVRP-YKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRD-------RSVLWWVPLVVIGLAVLRGICSFVST 75 (571)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc-------hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555443 34556777778888888888888899888886553221 11222334455666677777888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCchhhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 414 TCWRLVGERSAQRIRTKYLRAVLRQDIAFFDTEVSTSDIMHGISSDIAQIQEVMGEKVAHFAHNIFTFICGYTVGFLRSW 493 (1560)
Q Consensus 414 ~~~~~~~~~~~~~lr~~l~~~ll~~~l~ffd~~~~~G~i~~r~s~Dv~~i~~~l~~~l~~~i~~i~~~i~~~ii~~~~s~ 493 (1560)
+.....+.++..++|..+++++++.|.++|+.. +.|++++|+++|++.+++.+...+..++.+++.+++.++++++++|
T Consensus 76 ~~~~~~~~~~~~~lr~~l~~~~~~~~~~~~~~~-~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 154 (571)
T TIGR02203 76 YLLSWVSNKVVRDIRVRMFEKLLGLPVSFFDRQ-PTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSW 154 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 889999999999999999999999999999755 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHhHhHHHhHHH
Q 000406 494 KVSLVVLSVTPLMMFCGMAYKAVYVGLTSKEEASYRRAGSVAEQAISSIRTVFSFVAEDHFAVRYAGLLADSIPFGAKLG 573 (1560)
Q Consensus 494 ~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIka~~~e~~~~~~~~~~~~~~~~~~~k~~ 573 (1560)
.++++++++.|+++++..++.+..+....+..+..++..+.+.|.++|+++||.++.++.+.++|.+..++..+...+..
T Consensus 155 ~l~~i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (571)
T TIGR02203 155 QLTLIVVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMT 234 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888888888888888888889999999999999999999999999999999999999888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 000406 574 FAKGAGMGVIYLVTYATWALAFWYGSILVARKELSGGAAIACFFGVNVGGRGLALSLSYFAQFAQGTVAATRVFEIIDRV 653 (1560)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~ls~g~~~~~l~~~~~~~~~l~~~~~~~~~~~~a~~a~~Ri~~~l~~~ 653 (1560)
...+....+..++.++..++++++|++++..|.+++|.++++..++..+..|+..+...+..+.++..+.+|+.++++.+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~ 314 (571)
T TIGR02203 235 SAGSISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSP 314 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 88887777777777788888899999999999999999999999999999999999999999999999999999999865
Q ss_pred CCCCCCCCCCCcCCCCcccEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEE
Q 000406 654 PEIDPYNSEGRKLSSVSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLIT 733 (1560)
Q Consensus 654 ~~~~~~~~~~~~~~~~~g~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~ 733 (1560)
++.+.. .....+..+.|+++||+|+|++. +.++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|+
T Consensus 315 ~~~~~~---~~~~~~~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~ 390 (571)
T TIGR02203 315 PEKDTG---TRAIERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQIL 390 (571)
T ss_pred CCCCCC---CCCCCCCCCeEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEE
Confidence 432211 11112235679999999999754 35799999999999999999999999999999999999999999999
Q ss_pred ECCeecCCccHHHHhccEEEEecCCcCccccHHHHHhcCCC-CCCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCC
Q 000406 734 LDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKE-NATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQL 812 (1560)
Q Consensus 734 i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Tv~eNi~~g~~-~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~L 812 (1560)
+||+++++++.+++|++|+||||+|++|++|++|||.++.+ +.++++++++++.+++++++.++|+|+||.+|++|.+|
T Consensus 391 i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~L 470 (571)
T TIGR02203 391 LDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLL 470 (571)
T ss_pred ECCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcC
Confidence 99999999999999999999999999999999999999986 67899999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCccccccCCEEEEEeCCeEEEecC
Q 000406 813 SGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGN 892 (1560)
Q Consensus 813 SgGQrQRialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~D~i~vl~~G~iv~~G~ 892 (1560)
||||||||+||||++++|+|||||||||+||+++++.+.+.|++..+++|+|+||||++.+..||+|++|++|++++.|+
T Consensus 471 SgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~ 550 (571)
T TIGR02203 471 SGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGT 550 (571)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCC
Confidence 99999999999999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred hhhHhhhcchHHHHHHH
Q 000406 893 HRQLLERGGAYHDLVKL 909 (1560)
Q Consensus 893 ~~~l~~~~~~~~~l~~~ 909 (1560)
|+++++.++.|++++..
T Consensus 551 ~~~l~~~~~~~~~~~~~ 567 (571)
T TIGR02203 551 HNELLARNGLYAQLHNM 567 (571)
T ss_pred HHHHHHcCCHHHHHHHH
Confidence 99999888888887653
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-73 Score=788.73 Aligned_cols=570 Identities=19% Similarity=0.220 Sum_probs=453.5
Q ss_pred cCcccHHHHHHHhhhhhHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHHHH
Q 000406 327 AKPVGLFSLFKYSTKLDMIL-VLLGCIGALINGGALPWYSYFFGNFVNKIANESSDPDKTQMMKDAEKICLLMTVLAAIV 405 (1560)
Q Consensus 327 ~~~~~~~~l~~y~~~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 405 (1560)
.+.+++..+..|+....... .++.+++.++..++.....+|++.|.+.... . ....++++|+++.++.
T Consensus 943 ~g~v~~~~y~~Y~~~~g~~~~~~~~l~~~~~~~~~~~~~~~wl~~w~~~~~~----~-------~~~~~l~~y~~~~~~~ 1011 (1560)
T PTZ00243 943 SGSVPWSTYVAYLRFCGGLHAAGFVLATFAVTELVTVSSGVWLSMWSTRSFK----L-------SAATYLYVYLGIVLLG 1011 (1560)
T ss_pred cCcccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC----C-------CcccHHHHHHHHHHHH
Confidence 34566666666655432222 2222222333334344444555554432110 0 0112445555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 406 MMGAYLEITCWRLVGERSAQRIRTKYLRAVLRQDIAFFDTEVSTSDIMHGISSDIAQIQEVMGEKVAHFAHNIFTFICGY 485 (1560)
Q Consensus 406 ~~~~~l~~~~~~~~~~~~~~~lr~~l~~~ll~~~l~ffd~~~~~G~i~~r~s~Dv~~i~~~l~~~l~~~i~~i~~~i~~~ 485 (1560)
+++.++..++....+.+...++|..++++++++|+.|||++ ++|+++||+++|++.+++.++..+..++..++.+++.+
T Consensus 1012 ~~~~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~~-~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~l 1090 (1560)
T PTZ00243 1012 TFSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTT-PLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSI 1090 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccCC-CccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555665555667778889999999999999999999866 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHhH
Q 000406 486 TVGFLRSWKVSLVVLSVTPLMMFCGMAYKAVYVGLTSKEEASYRRAGSVAEQAISSIRTVFSFVAEDHFAVRYAGLLADS 565 (1560)
Q Consensus 486 ii~~~~s~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIka~~~e~~~~~~~~~~~~~~ 565 (1560)
+++++.+|.+.++++.++.+++.+..+|.+..+.+.+......++..+++.|+++|+++||+|++++.+.+++.+..+..
T Consensus 1091 i~~~~~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~ 1170 (1560)
T PTZ00243 1091 LVTSASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVV 1170 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHH
Confidence 99898888665555544445555667777777888888888889999999999999999999999999999999988887
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 566 IPFGAKLGFAKGAGMGVIYLVTYATWALAFWYGSIL--VARKELSGGAAIACFFGVNVGGRGLALSLSYFAQFAQGTVAA 643 (1560)
Q Consensus 566 ~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l--v~~g~ls~g~~~~~l~~~~~~~~~l~~~~~~~~~~~~a~~a~ 643 (1560)
.+...+......+......++..+..+++.+++... ...+.+++|.+..++.+...+..++..+...+..+++++.++
T Consensus 1171 ~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~ 1250 (1560)
T PTZ00243 1171 YSCSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSV 1250 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 765554444443333333333333333333333332 234457888887777777778888999999999999999999
Q ss_pred HHHHHHHccCCCCCCCC-------------------------C-CCC---cCCCCcccEEEEEEEEEcCCCCCccccccc
Q 000406 644 TRVFEIIDRVPEIDPYN-------------------------S-EGR---KLSSVSGKIEFKGVTFAYPSRPETVILRSL 694 (1560)
Q Consensus 644 ~Ri~~~l~~~~~~~~~~-------------------------~-~~~---~~~~~~g~i~~~~vs~~y~~~~~~~vL~~i 694 (1560)
+|+.++++..|+++... . ... +.++..|.|+|+||+|+|+.. .+++|+||
T Consensus 1251 eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~-~~~vL~~v 1329 (1560)
T PTZ00243 1251 ERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREG-LPLVLRGV 1329 (1560)
T ss_pred HHHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCC-CCceeecc
Confidence 99999997544321000 0 000 011235789999999999753 34699999
Q ss_pred eeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHHHhccEEEEecCCcCccccHHHHHhcCCC
Q 000406 695 NLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKE 774 (1560)
Q Consensus 695 sl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Tv~eNi~~g~~ 774 (1560)
||+|+|||++||||+||||||||+++|+|+++|++|+|++||+|+++++.+.+|++|+||||||.||+|||||||.++.
T Consensus 1330 sf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~- 1408 (1560)
T PTZ00243 1330 SFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFL- 1408 (1560)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCccc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998864
Q ss_pred CCCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHHhccC-CCEEEEeCCCCCCCHHHHHHHHHH
Q 000406 775 NATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKD-PRILLLDEPTSALDSESESIVQQA 853 (1560)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARAl~~~-p~illLDEpts~LD~~~~~~i~~~ 853 (1560)
..++++++++++.++++++|.++|.|+||.+|++|.+|||||||||||||||+++ |+|||||||||+||+++++.|++.
T Consensus 1409 ~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~ 1488 (1560)
T PTZ00243 1409 EASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQAT 1488 (1560)
T ss_pred CCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHH
Confidence 5689999999999999999999999999999999999999999999999999996 899999999999999999999999
Q ss_pred HHHhcCCcEEEEEecCccccccCCEEEEEeCCeEEEecChhhHhhh-cchHHHHHHHH
Q 000406 854 IDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLER-GGAYHDLVKLA 910 (1560)
Q Consensus 854 l~~~~~~~tvi~itH~l~~i~~~D~i~vl~~G~iv~~G~~~~l~~~-~~~~~~l~~~~ 910 (1560)
|++..+++|+|+||||++++.+||+|+||++|+|+|.|+|+||+++ ++.|+++++..
T Consensus 1489 L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~ 1546 (1560)
T PTZ00243 1489 VMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEAL 1546 (1560)
T ss_pred HHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHh
Confidence 9999889999999999999999999999999999999999999974 78999998643
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-74 Score=791.42 Aligned_cols=569 Identities=19% Similarity=0.253 Sum_probs=442.6
Q ss_pred cCcccHHHHHHHhhhhh-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHHHH
Q 000406 327 AKPVGLFSLFKYSTKLD-MILVLLGCIGALINGGALPWYSYFFGNFVNKIANESSDPDKTQMMKDAEKICLLMTVLAAIV 405 (1560)
Q Consensus 327 ~~~~~~~~l~~y~~~~~-~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 405 (1560)
.+.+++..+.+|++... ++.+++.+++.++..++.....+|+..|.+... .. ......|+++|++++++.
T Consensus 893 ~g~v~~~vy~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~----~~-----~~~~~~~l~~y~~l~~~~ 963 (1495)
T PLN03232 893 TGIISWNVLMRYNKAVGGLWVVMILLVCYLTTEVLRVSSSTWLSIWTDQST----PK-----SYSPGFYIVVYALLGFGQ 963 (1495)
T ss_pred cCcccHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC----CC-----CCCcchHHHHHHHHHHHH
Confidence 44556555555654422 233333333444444444344445544433210 00 011234677888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 406 MMGAYLEITCWRLVGERSAQRIRTKYLRAVLRQDIAFFDTEVSTSDIMHGISSDIAQIQEVMGEKVAHFAHNIFTFICGY 485 (1560)
Q Consensus 406 ~~~~~l~~~~~~~~~~~~~~~lr~~l~~~ll~~~l~ffd~~~~~G~i~~r~s~Dv~~i~~~l~~~l~~~i~~i~~~i~~~ 485 (1560)
.++.+++.+++.+.+.++..++|.+++++++++|+.|||++ ++|+++||+++|++.+++.++..+..++..++.+++.+
T Consensus 964 ~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~-~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~~ 1042 (1495)
T PLN03232 964 VAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTN-PTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTF 1042 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCcC-CchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888899999999999999999999999999866 99999999999999999999999999998888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHhH
Q 000406 486 TVGFLRSWKVSLVVLSVTPLMMFCGMAYKAVYVGLTSKEEASYRRAGSVAEQAISSIRTVFSFVAEDHFAVRYAGLLADS 565 (1560)
Q Consensus 486 ii~~~~s~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIka~~~e~~~~~~~~~~~~~~ 565 (1560)
++++++++...++++.+..+++++..++.+..+...+......++..+++.|+++|+++||+|++++.+.+++.+..+..
T Consensus 1043 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~~ 1122 (1495)
T PLN03232 1043 ALIGTVSTISLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNN 1122 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHHHHHH
Confidence 88777776544333333333334455566666777777777888999999999999999999999999888887776665
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccccc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 566 IPFGAKLGFAKGAGMGVIYLVTYATWALAFWYGSILVA-RKELS-----GGAAIACFFGVNVGGRGLALSLSYFAQFAQG 639 (1560)
Q Consensus 566 ~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~-~g~ls-----~g~~~~~l~~~~~~~~~l~~~~~~~~~~~~a 639 (1560)
.+..........+..... ..+..+++++.+...+. .+.+. .+.+..++.+...+..++..+...+..++.+
T Consensus 1123 ~~~~~~~~~~~~wl~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~~~~~ 1199 (1495)
T PLN03232 1123 IRFTLANTSSNRWLTIRL---ETLGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENS 1199 (1495)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 543332221111111111 11112222223333333 23221 2223334444555666788888899999999
Q ss_pred HHHHHHHHHHHccCCCCCCCCCCC--CcCCCCcccEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHH
Q 000406 640 TVAATRVFEIIDRVPEIDPYNSEG--RKLSSVSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTV 717 (1560)
Q Consensus 640 ~~a~~Ri~~~l~~~~~~~~~~~~~--~~~~~~~g~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL 717 (1560)
+.|++|+.++++.++|.+...... ...++..|.|+|+||+|+|+.. .+++|+|+||+|+|||++|||||||||||||
T Consensus 1200 ~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~-~~~vL~~isl~I~~GekvaIVG~SGSGKSTL 1278 (1495)
T PLN03232 1200 LNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPG-LPPVLHGLSFFVSPSEKVGVVGRTGAGKSSM 1278 (1495)
T ss_pred HHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCC-CCcccccceEEEcCCCEEEEECCCCCCHHHH
Confidence 999999999998755432111111 1112456889999999999632 3569999999999999999999999999999
Q ss_pred HHHHhcCCCCCccEEEECCeecCCccHHHHhccEEEEecCCcCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHHHHHhC
Q 000406 718 FALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISEL 797 (1560)
Q Consensus 718 l~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Tv~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l 797 (1560)
+++|+|+++|++|+|.|||+|+++++.+.+|++|++|||||.||+|||||||.++. ..++++++++++.++++++++++
T Consensus 1279 ~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~-~~sdeei~~al~~a~l~~~I~~l 1357 (1495)
T PLN03232 1279 LNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFS-EHNDADLWEALERAHIKDVIDRN 1357 (1495)
T ss_pred HHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCC-CCCHHHHHHHHHHcCCHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999986 57899999999999999999999
Q ss_pred CCCCCcccCCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCccccccCC
Q 000406 798 PLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKNAN 877 (1560)
Q Consensus 798 ~~gl~t~~~~~g~~LSgGQrQRialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~D 877 (1560)
|+|+||.+|++|.+|||||||||||||||+++|+|||||||||+||+++++.|++.|++..+++|+|+||||++++.+||
T Consensus 1358 p~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~D 1437 (1495)
T PLN03232 1358 PFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCD 1437 (1495)
T ss_pred cCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999989999999999999999999
Q ss_pred EEEEEeCCeEEEecChhhHhhhc-chHHHHHHHH
Q 000406 878 TIVVLDQGSVVEIGNHRQLLERG-GAYHDLVKLA 910 (1560)
Q Consensus 878 ~i~vl~~G~iv~~G~~~~l~~~~-~~~~~l~~~~ 910 (1560)
+|+||++|+|+|.|+|+||++++ +.|+++++.+
T Consensus 1438 rIlVL~~G~ivE~Gt~~eLl~~~~~~f~~l~~~~ 1471 (1495)
T PLN03232 1438 KILVLSSGQVLEYDSPQELLSRDTSAFFRMVHST 1471 (1495)
T ss_pred EEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHh
Confidence 99999999999999999999876 5899988643
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-72 Score=724.63 Aligned_cols=564 Identities=27% Similarity=0.395 Sum_probs=476.5
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 332 LFSLFKYSTKLDMILVLLGCIGALINGGALPWYSYFFGNFVNKIANESSDPDKTQMMKDAEKICLLMTVLAAIVMMGAYL 411 (1560)
Q Consensus 332 ~~~l~~y~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l 411 (1560)
++++++|.++. +..+++.++++++..++....+++++.++|.+... . ....++++++++.++..+..++
T Consensus 7 ~~~l~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~---~-------~~~~~~~~~~~~~~~~~~~~~~ 75 (588)
T PRK13657 7 YARVLQYLGAE-KRLGILLAVANVLLAAATFAEPILFGRIIDAISGK---G-------DIFPLLAAWAGFGLFNIIAGVL 75 (588)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---c-------cHHHHHHHHHHHHHHHHHHHHH
Confidence 44555655443 33445566666666667777788889999876532 1 0111222222223333333343
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 412 EITCWRLVGERSAQRIRTKYLRAVLRQDIAFFDTEVSTSDIMHGISSDIAQIQEVMGEKVAHFAHNIFTFICGYTVGFLR 491 (1560)
Q Consensus 412 ~~~~~~~~~~~~~~~lr~~l~~~ll~~~l~ffd~~~~~G~i~~r~s~Dv~~i~~~l~~~l~~~i~~i~~~i~~~ii~~~~ 491 (1560)
...+..+...+...+++.++++++++.|..+|+.. ++|++++|+++|++.+.+.+...+..++..++.+++.+++++.+
T Consensus 76 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~-~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (588)
T PRK13657 76 VARHADRLAHRRRLAVLTEYFERIIQLPLAWHSQR-GSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFM 154 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHCcC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445556666677799999999999999755 89999999999999999988888888888888888888888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHhHhHHHhH
Q 000406 492 SWKVSLVVLSVTPLMMFCGMAYKAVYVGLTSKEEASYRRAGSVAEQAISSIRTVFSFVAEDHFAVRYAGLLADSIPFGAK 571 (1560)
Q Consensus 492 s~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIka~~~e~~~~~~~~~~~~~~~~~~~k 571 (1560)
+|.+++++++++|+.+++..++.+......++..+...+..+.+.|.++|+++||.|+.++.+.+++.+..++..+...+
T Consensus 155 ~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (588)
T PRK13657 155 NWRLSLVLVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMP 234 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888888888888888888888888888999999999999999999999999999999999888777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 000406 572 LGFAKGAGMGVIYLVTYATWALAFWYGSILVARKELSGGAAIACFFGVNVGGRGLALSLSYFAQFAQGTVAATRVFEIID 651 (1560)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~ls~g~~~~~l~~~~~~~~~l~~~~~~~~~~~~a~~a~~Ri~~~l~ 651 (1560)
..........+..++..+..++++++|++++.+|.+++|.+++++.++..+..++..+...+..+..+..+++|+.++++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~ 314 (588)
T PRK13657 235 VLSWWALASVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVED 314 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 77776666666667777777788899999999999999999999888888888999999999999999999999999987
Q ss_pred cCCCCCCCCCCCCcCCCCcccEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccE
Q 000406 652 RVPEIDPYNSEGRKLSSVSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGL 731 (1560)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~g~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~ 731 (1560)
.+++.+. .......++..+.|+++||+|+|+++ .++|+|+||+++|||+++|+|+||||||||+++|+|+++|++|+
T Consensus 315 ~~~~~~~-~~~~~~~~~~~~~I~~~~vsf~y~~~--~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~ 391 (588)
T PRK13657 315 AVPDVRD-PPGAIDLGRVKGAVEFDDVSFSYDNS--RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGR 391 (588)
T ss_pred CCcccCC-CCCCCCcCCCCCeEEEEEEEEEeCCC--CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCE
Confidence 6443211 11111112234579999999999742 45899999999999999999999999999999999999999999
Q ss_pred EEECCeecCCccHHHHhccEEEEecCCcCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCC
Q 000406 732 ITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQ 811 (1560)
Q Consensus 732 I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Tv~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~ 811 (1560)
|.+||+++++++.+.+|++|+||||+|.+|++||+|||.++.++.++++++++++.+++++++.++|.|+||.++++|.+
T Consensus 392 I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~ 471 (588)
T PRK13657 392 ILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQ 471 (588)
T ss_pred EEECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCC
Confidence 99999999999999999999999999999999999999999888889999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCccccccCCEEEEEeCCeEEEec
Q 000406 812 LSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIG 891 (1560)
Q Consensus 812 LSgGQrQRialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~D~i~vl~~G~iv~~G 891 (1560)
|||||||||+|||||+++|+|||||||||+||+++++.+.+.|++..+++|+|+||||++.++.||+|++|++|++++.|
T Consensus 472 LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g 551 (588)
T PRK13657 472 LSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESG 551 (588)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999999999887799999999999999999999999999999999
Q ss_pred ChhhHhhhcchHHHHHHHH
Q 000406 892 NHRQLLERGGAYHDLVKLA 910 (1560)
Q Consensus 892 ~~~~l~~~~~~~~~l~~~~ 910 (1560)
+|++++++++.|+++++.+
T Consensus 552 ~~~~l~~~~~~y~~l~~~~ 570 (588)
T PRK13657 552 SFDELVARGGRFAALLRAQ 570 (588)
T ss_pred CHHHHHHCCChHHHHHHHh
Confidence 9999998889999988744
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-72 Score=719.44 Aligned_cols=564 Identities=27% Similarity=0.383 Sum_probs=479.8
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 332 LFSLFKYSTKLDMILVLLGCIGALINGGALPWYSYFFGNFVNKIANESSDPDKTQMMKDAEKICLLMTVLAAIVMMGAYL 411 (1560)
Q Consensus 332 ~~~l~~y~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l 411 (1560)
++++++|+++ .++.++++++++++..++.+..+++++.++|.+.... + . . .++++++++.++..+..++
T Consensus 7 ~~~l~~~l~~-~k~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~---~---~---~-~~~~~~~~~~~~~~~~~~~ 75 (585)
T TIGR01192 7 YVRALSYLNV-HKNRVLLIVIANITLAAITIAEPILFGRIIDAISSKS---D---V---L-PTLALWAGFGVFNTIAYVL 75 (585)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---c---H---H-HHHHHHHHHHHHHHHHHHH
Confidence 3456666654 3445667777788888888889999999999765321 0 0 0 1111222223333334444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 412 EITCWRLVGERSAQRIRTKYLRAVLRQDIAFFDTEVSTSDIMHGISSDIAQIQEVMGEKVAHFAHNIFTFICGYTVGFLR 491 (1560)
Q Consensus 412 ~~~~~~~~~~~~~~~lr~~l~~~ll~~~l~ffd~~~~~G~i~~r~s~Dv~~i~~~l~~~l~~~i~~i~~~i~~~ii~~~~ 491 (1560)
...+...+..++..++|.+++++++++|++||+.. ++|++++|+++|++.+.+.+...+..++..++.+++.+++++.+
T Consensus 76 ~~~~~~~~~~~~~~~lr~~~~~~l~~l~~~~~~~~-~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 154 (585)
T TIGR01192 76 VAREADRLAHGRRATLLTEAFGRIISMPLSWHQQR-GTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAM 154 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455556666777799999999999999765 89999999999999999999888888888888888888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHhHhHHHhH
Q 000406 492 SWKVSLVVLSVTPLMMFCGMAYKAVYVGLTSKEEASYRRAGSVAEQAISSIRTVFSFVAEDHFAVRYAGLLADSIPFGAK 571 (1560)
Q Consensus 492 s~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIka~~~e~~~~~~~~~~~~~~~~~~~k 571 (1560)
+|.+++++++++|+++++...+.+...+..++......+..+.+.|.++|+++||+|+.|+.+.+++.+..++..+...+
T Consensus 155 ~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (585)
T TIGR01192 155 DWRLSIVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYP 234 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888888888888887777788888899999999999999999999999999999988887777666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 000406 572 LGFAKGAGMGVIYLVTYATWALAFWYGSILVARKELSGGAAIACFFGVNVGGRGLALSLSYFAQFAQGTVAATRVFEIID 651 (1560)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~ls~g~~~~~l~~~~~~~~~l~~~~~~~~~~~~a~~a~~Ri~~~l~ 651 (1560)
.....+....+..++..+..++++++|++++..|.+++|.+++++.++..+..++..+...+..+..+..+++|+.++++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~ 314 (585)
T TIGR01192 235 VLDWWALASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLED 314 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 66666666666666667777788899999999999999999999888888888899999999999999999999999998
Q ss_pred cCCCCCCCCCCCCcCCCCcccEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccE
Q 000406 652 RVPEIDPYNSEGRKLSSVSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGL 731 (1560)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~g~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~ 731 (1560)
.+++.++. ......+...+.|+++||+|+|++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+
T Consensus 315 ~~~~~~~~-~~~~~~~~~~~~i~~~~v~~~y~~~--~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~ 391 (585)
T TIGR01192 315 SVFQREEP-ADAPELPNVKGAVEFRHITFEFANS--SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQ 391 (585)
T ss_pred CCccccCC-ccCCCCCCCCCeEEEEEEEEECCCC--CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCE
Confidence 64432111 1111112234679999999999742 35899999999999999999999999999999999999999999
Q ss_pred EEECCeecCCccHHHHhccEEEEecCCcCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCC
Q 000406 732 ITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQ 811 (1560)
Q Consensus 732 I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Tv~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~ 811 (1560)
|.+||.++++++.+.+|+.++||||+|++|++|++|||.++.++.++++++++++.+++++++.++|+|++|.+|++|.+
T Consensus 392 i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~ 471 (585)
T TIGR01192 392 ILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNR 471 (585)
T ss_pred EEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCC
Confidence 99999999999999999999999999999999999999999887788999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCccccccCCEEEEEeCCeEEEec
Q 000406 812 LSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIG 891 (1560)
Q Consensus 812 LSgGQrQRialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~D~i~vl~~G~iv~~G 891 (1560)
|||||||||+|||||+++|+|||||||||+||+++++.+.+.|+++.+++|+|+||||++.+..||+|++|++|++++.|
T Consensus 472 LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g 551 (585)
T TIGR01192 472 LSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKG 551 (585)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999999887899999999999999899999999999999999
Q ss_pred ChhhHhhhcchHHHHHHHH
Q 000406 892 NHRQLLERGGAYHDLVKLA 910 (1560)
Q Consensus 892 ~~~~l~~~~~~~~~l~~~~ 910 (1560)
++++++++++.|++++..+
T Consensus 552 ~~~~l~~~~~~y~~l~~~~ 570 (585)
T TIGR01192 552 SFQELIQKDGRFYKLLRRS 570 (585)
T ss_pred CHHHHHHCCChHHHHHHhC
Confidence 9999999999999998754
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-73 Score=721.05 Aligned_cols=524 Identities=22% Similarity=0.261 Sum_probs=444.7
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 335 LFKYSTKLDMILVLLGCIGALINGGALPWYSYFFGNFVNKIANESSDPDKTQMMKDAEKICLLMTVLAAIVMMGAYLEIT 414 (1560)
Q Consensus 335 l~~y~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~ 414 (1560)
+++|.++.. +.+++.+++.++..++....+++++.++|...... . .. ....++..++++.++..++.++..+
T Consensus 4 l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~-----~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (529)
T TIGR02868 4 ILPLLQPRT-RRLVVAILLGALALGSAVALLGVSAWLISRAAEMP-----P-VL-YLSVAAVAVRAFGIGRAVFRYLERL 75 (529)
T ss_pred HHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-----h-hH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456655433 34456666666677777777888899888754321 0 00 0111111122344555667778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCchhhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 415 CWRLVGERSAQRIRTKYLRAVLRQDIAFFDTEVSTSDIMHGISSDIAQIQEVMGEKVAHFAHNIFTFICGYTVGFLRSWK 494 (1560)
Q Consensus 415 ~~~~~~~~~~~~lr~~l~~~ll~~~l~ffd~~~~~G~i~~r~s~Dv~~i~~~l~~~l~~~i~~i~~~i~~~ii~~~~s~~ 494 (1560)
+....+.++..++|.+++++++++|..+|++. ++|++++|+++|++.+++.+...+..++..++.+++.++++++++|.
T Consensus 76 ~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~-~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 154 (529)
T TIGR02868 76 VGHDAALRSLGRLRVRVYDRLARLALAGRRRF-QTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVP 154 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCccccccC-ChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 88889999999999999999999999999755 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHhHhHHHhHHH
Q 000406 495 VSLVVLSVTPLMMFCGMAY-KAVYVGLTSKEEASYRRAGSVAEQAISSIRTVFSFVAEDHFAVRYAGLLADSIPFGAKLG 573 (1560)
Q Consensus 495 l~lv~l~~~pl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIka~~~e~~~~~~~~~~~~~~~~~~~k~~ 573 (1560)
+++++++++|+++++...+ .+..+...++..+..++..+.+.|.++|+++||+|++|+.+.++|.+..++..+...+..
T Consensus 155 l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (529)
T TIGR02868 155 AALVLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAA 234 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998888777776655444 343455556666777888999999999999999999999999999999988888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 000406 574 FAKGAGMGVIYLVTYATWALAFWYGSILVARKELSGGAAIACFFGVNVGGRGLALSLSYFAQFAQGTVAATRVFEIIDRV 653 (1560)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~ls~g~~~~~l~~~~~~~~~l~~~~~~~~~~~~a~~a~~Ri~~~l~~~ 653 (1560)
...+....+..++..+..++++|+|++++.+|.+++|.+++++.+...+..++..+...+..+.++..+.+|+.++++.+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~ 314 (529)
T TIGR02868 235 RATGLGAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAK 314 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 88777777777777777788889999999999999999999988888888888888889999999999999999999865
Q ss_pred CCCCCCCCC-CCcCCCCcccEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEE
Q 000406 654 PEIDPYNSE-GRKLSSVSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732 (1560)
Q Consensus 654 ~~~~~~~~~-~~~~~~~~g~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I 732 (1560)
++.+..... ....++..+.|+|+||+|+|+++ +++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~--~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I 392 (529)
T TIGR02868 315 GPRPEGVVPAAGALGLGKPTLELRDLSFGYPGS--PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEV 392 (529)
T ss_pred CCcCCCCCCCCcccCCCCceEEEEEEEEecCCC--CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE
Confidence 542211111 11112234679999999999753 359999999999999999999999999999999999999999999
Q ss_pred EECCeecCCccHHHHhccEEEEecCCcCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCC
Q 000406 733 TLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQL 812 (1560)
Q Consensus 733 ~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Tv~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~L 812 (1560)
.+||+|++++ .+++|++|+||||+|+||++||+|||.+|.++.++++++++++.+++++++.++|+|+||.+|++|.+|
T Consensus 393 ~i~g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~L 471 (529)
T TIGR02868 393 TLDGVSVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARL 471 (529)
T ss_pred EECCEEhhhH-HHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcC
Confidence 9999999999 999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCc
Q 000406 813 SGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRL 870 (1560)
Q Consensus 813 SgGQrQRialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l 870 (1560)
|||||||||||||++++|+|||||||||+||+++++.+++.+++..+++|+|+||||+
T Consensus 472 SGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 472 SGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 9999999999999999999999999999999999999999999988899999999995
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-72 Score=721.98 Aligned_cols=567 Identities=34% Similarity=0.530 Sum_probs=484.6
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 334 SLFKYSTKLDMILVLLGCIGALINGGALPWYSYFFGNFVNKIANESSDPDKTQMMKDAEKICLLMTVLAAIVMMGAYLEI 413 (1560)
Q Consensus 334 ~l~~y~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~ 413 (1560)
.+++|.++. +..+++.+++.++..++....+++++.++|...... + ......++.+++++.++..+..+++.
T Consensus 8 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (576)
T TIGR02204 8 ALWPFVRPY-RGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKD---S----SGLLNRYFAFLLVVALVLALGTAARF 79 (576)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccc---c----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555443 344556666677777777788889999998744221 1 11122233334444445556667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCchhhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 414 TCWRLVGERSAQRIRTKYLRAVLRQDIAFFDTEVSTSDIMHGISSDIAQIQEVMGEKVAHFAHNIFTFICGYTVGFLRSW 493 (1560)
Q Consensus 414 ~~~~~~~~~~~~~lr~~l~~~ll~~~l~ffd~~~~~G~i~~r~s~Dv~~i~~~l~~~l~~~i~~i~~~i~~~ii~~~~s~ 493 (1560)
+....++.++..++|..+++++++.|..+|+.. +.|++++|+++|++.+++.+...+..++..++.+++.+++++.++|
T Consensus 80 ~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~-~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (576)
T TIGR02204 80 YLVTWLGERVVADIRRAVFAHLISLSPSFFDKN-RSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSP 158 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 788889999999999999999999999999765 8999999999999999999999899989999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHhHhHHHhHHH
Q 000406 494 KVSLVVLSVTPLMMFCGMAYKAVYVGLTSKEEASYRRAGSVAEQAISSIRTVFSFVAEDHFAVRYAGLLADSIPFGAKLG 573 (1560)
Q Consensus 494 ~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIka~~~e~~~~~~~~~~~~~~~~~~~k~~ 573 (1560)
++++++++.+|+++++..++.+......+.......+..+.+.|.++|+++||++++|+.+.++|.+..++..+...+..
T Consensus 159 ~l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (576)
T TIGR02204 159 KLTSLVLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRI 238 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888888888888888888888888888888889999999999999999999999999999999888776666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 000406 574 FAKGAGMGVIYLVTYATWALAFWYGSILVARKELSGGAAIACFFGVNVGGRGLALSLSYFAQFAQGTVAATRVFEIIDRV 653 (1560)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~ls~g~~~~~l~~~~~~~~~l~~~~~~~~~~~~a~~a~~Ri~~~l~~~ 653 (1560)
........+..++.++..++.+++|++++..|.+++|.++++..+......++..+...+..+.++..+++|+.++++.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~ 318 (576)
T TIGR02204 239 RTRALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAE 318 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 55555555555555566677788899999999999999999988888888899999999999999999999999999864
Q ss_pred CCCCCCCCCCCcCCCCcccEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEE
Q 000406 654 PEIDPYNSEGRKLSSVSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLIT 733 (1560)
Q Consensus 654 ~~~~~~~~~~~~~~~~~g~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~ 733 (1560)
++.+..........+..+.|+++||+|+|+...++++|+|+||+|+|||+++|+|+||||||||+++|+|+++|++|+|.
T Consensus 319 ~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~ 398 (576)
T TIGR02204 319 PDIKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRIL 398 (576)
T ss_pred CcCCCCCCCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEE
Confidence 43221111111111224579999999999854335799999999999999999999999999999999999999999999
Q ss_pred ECCeecCCccHHHHhccEEEEecCCcCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCC
Q 000406 734 LDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLS 813 (1560)
Q Consensus 734 i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Tv~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LS 813 (1560)
+||.++++++...+|++|+||||+|++|++||+|||.++.++.++++++++++.+++.++++.+|.|++|.++++|.+||
T Consensus 399 i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LS 478 (576)
T TIGR02204 399 LDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLS 478 (576)
T ss_pred ECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCC
Confidence 99999999999999999999999999999999999999988778999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCccccccCCEEEEEeCCeEEEecCh
Q 000406 814 GGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNH 893 (1560)
Q Consensus 814 gGQrQRialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~D~i~vl~~G~iv~~G~~ 893 (1560)
||||||++||||++++|+|||||||||+||+++++.+.+.++++.+++|+|+||||++.+..||+|++|++|++++.|++
T Consensus 479 gGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~ 558 (576)
T TIGR02204 479 GGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTH 558 (576)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecH
Confidence 99999999999999999999999999999999999999999998789999999999999999999999999999999999
Q ss_pred hhHhhhcchHHHHHHH
Q 000406 894 RQLLERGGAYHDLVKL 909 (1560)
Q Consensus 894 ~~l~~~~~~~~~l~~~ 909 (1560)
++++++++.|++++..
T Consensus 559 ~~l~~~~~~~~~l~~~ 574 (576)
T TIGR02204 559 AELIAKGGLYARLARL 574 (576)
T ss_pred HHHHHcCChHHHHHhh
Confidence 9999988999888753
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-72 Score=719.84 Aligned_cols=540 Identities=25% Similarity=0.384 Sum_probs=467.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 000406 361 LPWYSYFFGNFVNKIANESSDPDKTQMMKDAEKICLLMTVLAAIVMMGAYLEITCWRLVGERSAQRIRTKYLRAVLRQDI 440 (1560)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~lr~~l~~~ll~~~l 440 (1560)
..+.+++++.++|....... + ......++++++++.++..++.++..++....+.+...++|.+++++++++|+
T Consensus 11 ~~~~p~~~~~iid~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~ 84 (569)
T PRK10789 11 QLIPPKVVGIIVDGVTEQHM--T----TGQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHP 84 (569)
T ss_pred HHHHHHHHHHHHHHhccCCc--c----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 34455688888887643211 1 01122334444445555666677777777788999999999999999999999
Q ss_pred hhhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 441 AFFDTEVSTSDIMHGISSDIAQIQEVMGEKVAHFAHNIFTFICGYTVG-FLRSWKVSLVVLSVTPLMMFCGMAYKAVYVG 519 (1560)
Q Consensus 441 ~ffd~~~~~G~i~~r~s~Dv~~i~~~l~~~l~~~i~~i~~~i~~~ii~-~~~s~~l~lv~l~~~pl~~~~~~~~~~~~~~ 519 (1560)
.+|+.. ++|++++|+++|++.+...+...+..++..++.+++.++++ ++++|.+++++++++|+++++...+.+...+
T Consensus 85 ~~~~~~-~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~ 163 (569)
T PRK10789 85 EFYLRH-RTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHE 163 (569)
T ss_pred HHHcCC-CHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999755 89999999999999999888777777777766666665555 5799999999988889988888888888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHhHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 520 LTSKEEASYRRAGSVAEQAISSIRTVFSFVAEDHFAVRYAGLLADSIPFGAKLGFAKGAGMGVIYLVTYATWALAFWYGS 599 (1560)
Q Consensus 520 ~~~~~~~~~~~~~~~~~E~l~gi~tIka~~~e~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 599 (1560)
..++.++..++..+.+.|.++|+++||+|++|+.+.++|.+..++..+...+.....+....+..++..+..++++++|+
T Consensus 164 ~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~ 243 (569)
T PRK10789 164 RFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGS 243 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777888888999999999999999999999999999999988887777777777776666666666667777888999
Q ss_pred HHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCcCCCCcccEEEEEEE
Q 000406 600 ILVARKELSGGAAIACFFGVNVGGRGLALSLSYFAQFAQGTVAATRVFEIIDRVPEIDPYNSEGRKLSSVSGKIEFKGVT 679 (1560)
Q Consensus 600 ~lv~~g~ls~g~~~~~l~~~~~~~~~l~~~~~~~~~~~~a~~a~~Ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~vs 679 (1560)
+++.+|.+++|.++++..+...+..|+..+...+..+..+..+.+|+.++++.+++.++ .....+...+.|+++|++
T Consensus 244 ~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~---~~~~~~~~~~~I~~~~v~ 320 (569)
T PRK10789 244 WMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKD---GSEPVPEGRGELDVNIRQ 320 (569)
T ss_pred HHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccC---CCCCCCCCCCcEEEEEEE
Confidence 99999999999999999888888889999999999999999999999999986543221 111122235679999999
Q ss_pred EEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHHHhccEEEEecCCc
Q 000406 680 FAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIGMVGQEPI 759 (1560)
Q Consensus 680 ~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~ 759 (1560)
|+|+.. +.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+||+++.+++...+|+.|+||+|+|+
T Consensus 321 ~~y~~~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~ 399 (569)
T PRK10789 321 FTYPQT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPF 399 (569)
T ss_pred EECCCC-CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCe
Confidence 999743 3569999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccHHHHHhcCCCCCCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCC
Q 000406 760 LFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPT 839 (1560)
Q Consensus 760 lf~~Tv~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARAl~~~p~illLDEpt 839 (1560)
+|++|++|||.++.++.++++++++++.+++++++.++|+|++|.+|++|.+||||||||++||||++++|+||||||||
T Consensus 400 lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpt 479 (569)
T PRK10789 400 LFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDAL 479 (569)
T ss_pred eccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcc
Confidence 99999999999998878899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEEecCccccccCCEEEEEeCCeEEEecChhhHhhhcchHHHHHHHHH
Q 000406 840 SALDSESESIVQQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLERGGAYHDLVKLAS 911 (1560)
Q Consensus 840 s~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~D~i~vl~~G~iv~~G~~~~l~~~~~~~~~l~~~~~ 911 (1560)
|+||+++++.+.+.|+++.+++|+|+||||++.+..||+|++|++|++++.|++++++++++.|++++..+.
T Consensus 480 s~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~~ 551 (569)
T PRK10789 480 SAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQSGWYRDMYRYQQ 551 (569)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHcCChHHHHHHHhh
Confidence 999999999999999988789999999999999999999999999999999999999999999999987653
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-73 Score=717.98 Aligned_cols=525 Identities=24% Similarity=0.327 Sum_probs=449.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 992 MIIFGFILGMHAGAILSIFPLILGQALQVYFDDTASTLRRDVRYLSLALVGLGFGCIIFMTGQQGFCGWAGTKLTMRVRE 1071 (1560)
Q Consensus 992 ~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Lr~ 1071 (1560)
.+.++++++++.+++....|++++.+++....... .......+.+.++++.++..++.++..++....+.++..++|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 81 (529)
T TIGR02857 4 ALALLGLLGALGALLIIAQAWLLARVIDGLISAGE--PLAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLRE 81 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666677777777888888888876531111 1122333445555566677788888889999999999999999
Q ss_pred HHHHHHHcCCCCCcccccCChHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 1072 LLFRSILKQEPGWFDFEENSTGVLVSRLSIDSISFRSVLGDRFSVLLMGLSSAAVGLGVSLVLNWRLTLVAAALTPFTLG 1151 (1560)
Q Consensus 1072 ~l~~~ll~~~~~ffd~~~~~~G~il~R~s~Di~~i~~~l~~~l~~~l~~~~~~i~~l~~~~~~~~~l~lv~l~~ipl~~~ 1151 (1560)
.+|+++++.|+.||+ +.++|++++|+++|++.+++.+...+..++..++..++++++++.++|.+++++++.+|++++
T Consensus 82 ~l~~~l~~~~~~~~~--~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~ 159 (529)
T TIGR02857 82 RLLAAVAALGPGWLQ--GRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPI 159 (529)
T ss_pred HHHHHHHhCCchhhc--cCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 999999999999986 789999999999999999999999999999999999999999999999999998888887765
Q ss_pred HHHHHH-HHhcchhhhhhhHHHHHHHHHHHhcchhHHHhccchHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 1152 ASYLSL-IINVGPKIDNSSYAKASSIASGAVSNIRTVTTFSAQEQIINSFDKALSEPKKKSVKRSQILGLTLGFSQGAMY 1230 (1560)
Q Consensus 1152 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1230 (1560)
+.++.. ......+..+....+..+.+.|.++|+++||+|+.++.+.++|++..++..+...+..+.......+..++..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (529)
T TIGR02857 160 FMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFAT 239 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544332 2222233335566778899999999999999999999999999999999888888877777777666666666
Q ss_pred HHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccCCccccccccccCCCC
Q 000406 1231 VAYTFTLWFGAYLVKQGHASFGVVYKIFLILVLSSFSVGQLAGLAPDTSMAATAIPAVLQITKRKPLIDNVKGRKLERSK 1310 (1560)
Q Consensus 1231 ~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~s~~ri~~i~~~~~~~~~~~~~~~~~~~ 1310 (1560)
+..+++..++++.+..|.+++|.+++++.+......|+..+...+..+..+..+.+|+.++++.+++..+.. ..+.+.
T Consensus 240 ~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~~--~~~~~~ 317 (529)
T TIGR02857 240 LSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGKA--PVTAAP 317 (529)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCc--CCCCCC
Confidence 666666666667777999999999999888888999999999999999999999999999987543221111 111112
Q ss_pred CccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhh
Q 000406 1311 PLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRK 1390 (1560)
Q Consensus 1311 ~~~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~ 1390 (1560)
.+.|+|+||+|+|++. ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.+||+|+++++.+++|+
T Consensus 318 ~~~i~~~~v~f~y~~~-~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~ 396 (529)
T TIGR02857 318 APSLEFSGLSVAYPGR-RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRD 396 (529)
T ss_pred CCeEEEEEEEEECCCC-CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHh
Confidence 3469999999999854 346999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEcCCCCCCCccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHccC
Q 000406 1391 QTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKG 1470 (1560)
Q Consensus 1391 ~I~~VpQdp~LF~gTIreNL~~g~~~~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLARALLr~ 1470 (1560)
+++||||||++|++||||||.++.++.++++++++++.+++++++.++|+||||++||+|.+|||||||||+|||||+++
T Consensus 397 ~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~ 476 (529)
T TIGR02857 397 QIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRD 476 (529)
T ss_pred heEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999888899999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHHHhhcCEEEEE
Q 000406 1471 SRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIREANMIAVV 1523 (1560)
Q Consensus 1471 p~ILILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlsti~~aDrIlVL 1523 (1560)
|+|||||||||+||++||+.|++.|++..+++|+|+||||+++++.||+|+||
T Consensus 477 ~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 477 APLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred CCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 99999999999999999999999999988899999999999999999999986
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-75 Score=663.66 Aligned_cols=489 Identities=31% Similarity=0.414 Sum_probs=421.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccCChHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 000406 1057 FCGWAGTKLTMRVRELLFRSILKQEPGWFDFEENSTGVLVSRLSIDSISFRSVLGDRFSVLLMGLSSAAVGLGV-SLVLN 1135 (1560)
Q Consensus 1057 ~~~~~~~~~~~~Lr~~l~~~ll~~~~~ffd~~~~~~G~il~R~s~Di~~i~~~l~~~l~~~l~~~~~~i~~l~~-~~~~~ 1135 (1560)
++..+++.+...+--..|.|+.++++.|.- ++.+|-+..-+......++..+...+...+..++-+....++ ...++
T Consensus 5 ~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl--~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~ 82 (497)
T COG5265 5 LFSPVGQIAVRVLAYVTFFHLHSLSLRFHL--ERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYG 82 (497)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhcchhhhh--hcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcc
Confidence 345566777778888899999999998854 566666655554444455555555555555555544444333 44578
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchh-hhhhhHHHHHHHHHHHhcchhHHHhccchHHHHHHHHHHHhhhHHHHHHH
Q 000406 1136 WRLTLVAAALTPFTLGASYLSLIINVGPK-IDNSSYAKASSIASGAVSNIRTVTTFSAQEQIINSFDKALSEPKKKSVKR 1214 (1560)
Q Consensus 1136 ~~l~lv~l~~ipl~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~e~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~ 1214 (1560)
|+++++.++++.+++.+.....-.+...+ ....+.+.++....+++-+.+++|.|+.|+.+..+|+..++.+.++..+.
T Consensus 83 ~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~ 162 (497)
T COG5265 83 WWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKV 162 (497)
T ss_pred cHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHH
Confidence 99999888877766655443222222223 33667788889999999999999999999999999999999999998887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcc
Q 000406 1215 SQILGLTLGFSQGAMYVAYTFTLWFGAYLVKQGHASFGVVYKIFLILVLSSFSVGQLAGLAPDTSMAATAIPAVLQITKR 1294 (1560)
Q Consensus 1215 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~s~~ri~~i~~~ 1294 (1560)
.....+.......++..........+...+..|++|.|+++..-.++...+.|+..+...+.++.++.+.+++++++.+.
T Consensus 163 ~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~ 242 (497)
T COG5265 163 HVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDV 242 (497)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhcc
Confidence 77777766666666777777778888899999999999999999999999999999999999999999999999999988
Q ss_pred CCccccccccccCC-CCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEE
Q 000406 1295 KPLIDNVKGRKLER-SKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373 (1560)
Q Consensus 1295 ~~~~~~~~~~~~~~-~~~~~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I 1373 (1560)
+.+..+....++-+ ...+.+.|++|+|.|.. .+++|+++||++++|+++||||+||+||||++++|+|||++++|.|
T Consensus 243 ~~~v~d~pda~~L~~~~~g~v~F~~V~F~y~~--~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I 320 (497)
T COG5265 243 EAEVSDAPDAPPLWPVRLGAVAFINVSFAYDP--RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSI 320 (497)
T ss_pred chhhccCCCCccccccccceEEEEEEEeeccc--cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceE
Confidence 77665543333333 44677999999999964 4679999999999999999999999999999999999999999999
Q ss_pred EECCEecCCCCHHHHhhceEEEcCCCCCCCccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCC
Q 000406 1374 MIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQL 1453 (1560)
Q Consensus 1374 ~IdGvdi~~i~l~~LR~~I~~VpQdp~LF~gTIreNL~~g~~~~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~L 1453 (1560)
.|||.|++++..+.+|+.||+||||..||+.|+..|+.+|+|+++++|++.|++.+.+++||.++|+||||.|||.|-.|
T Consensus 321 ~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vgerglkl 400 (497)
T COG5265 321 TIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKL 400 (497)
T ss_pred EEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHHHhhcCEEEEEeCCEEEEecC
Q 000406 1454 SGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGS 1533 (1560)
Q Consensus 1454 SGGQrQRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlsti~~aDrIlVLd~G~IvE~Gt 1533 (1560)
|||||||+||||+||++|+||+||||||+||..||++||.+|++..+++|.++|||||+||.+||.|+||++|+|+|.|+
T Consensus 401 Sggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~erg~ 480 (497)
T COG5265 401 SGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGT 480 (497)
T ss_pred cCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEecCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccChHHHHHHH
Q 000406 1534 HETLLASHLNGVYASLVR 1551 (1560)
Q Consensus 1534 ~~eLl~~~~~g~y~~l~~ 1551 (1560)
|+||++ .+|.|++||.
T Consensus 481 h~~ll~--~~g~ya~mw~ 496 (497)
T COG5265 481 HEELLA--AGGLYAEMWR 496 (497)
T ss_pred HHHHHH--cCChHHHHhc
Confidence 999998 5999999996
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-75 Score=660.62 Aligned_cols=502 Identities=29% Similarity=0.415 Sum_probs=423.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 406 MMGAYLEITCWRLVGERSAQRIRTKYLRAVLRQDIAFFDTEVSTSDIMHGISSDIAQIQEVMGEKVAHFAHNIFTFICGY 485 (1560)
Q Consensus 406 ~~~~~l~~~~~~~~~~~~~~~lr~~l~~~ll~~~l~ffd~~~~~G~i~~r~s~Dv~~i~~~l~~~l~~~i~~i~~~i~~~ 485 (1560)
.+..-++.++|..+.+...+++-..+|+|+..+.++|+-.+ .+|+++..+....+.+. ++...+.++.-.++-+++++
T Consensus 273 G~~~nlRtfLWi~VqQyttR~ie~~lfrHlh~LSlrwHL~r-rtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~ 350 (790)
T KOG0056|consen 273 GFLNNLRTFLWIPVQQYTTREIETELFRHLHNLSLRWHLNR-RTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAM 350 (790)
T ss_pred cchhhhheeEEEEhhHhHHHHHHHHHHHHHHhhceeeeecc-cccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhh
Confidence 45556777888888999999999999999999999999655 89998887776655554 44444444443444444443
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHh
Q 000406 486 TVG-FLRSWKVSLVVLSVTPLMMFCGMAYKAVYVGLTSKEEASYRRAGSVAEQAISSIRTVFSFVAEDHFAVRYAGLLAD 564 (1560)
Q Consensus 486 ii~-~~~s~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIka~~~e~~~~~~~~~~~~~ 564 (1560)
+.. ..++||.++++++++.+++.+.........+.+++......+......+++-|.+|||.|++|++..++|.+...+
T Consensus 351 vYF~~~Fn~wFgLIVfl~m~lY~~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~ 430 (790)
T KOG0056|consen 351 VYFFIKFNIWFGLIVFLMMLLYCYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILK 430 (790)
T ss_pred hhhhhhHhHHHHHHHHHHHHHHhheeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHH
Confidence 332 3468999999888887777665555555555666665556666667779999999999999999999999999988
Q ss_pred HhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 565 SIPFGAKLGFAKGAGMGVIYLVTYATWALAFWYGSILVARKELSGGAAIACFFGVNVGGRGLALSLSYFAQFAQGTVAAT 644 (1560)
Q Consensus 565 ~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~ls~g~~~~~l~~~~~~~~~l~~~~~~~~~~~~a~~a~~ 644 (1560)
+++...|......+....-..+..+...+...+.+|+|..+.+++|+.+.+..+++...+|+......+..++++.+-++
T Consensus 431 Yqk~E~ks~~sLnfLN~~Qn~Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmE 510 (790)
T KOG0056|consen 431 YQKQEWKSLASLNFLNIVQNGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDME 510 (790)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHH
Confidence 88766664433333222222222233333334455667788999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCCCCCCCCCCCcCCCCcccEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcC
Q 000406 645 RVFEIIDRVPEIDPYNSEGRKLSSVSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERF 724 (1560)
Q Consensus 645 Ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~ 724 (1560)
+++++++++||..+.+ ...+....+|.|+|+||+|.|.. .+++|+||||+++||+.+|||||||+||||++++|.|+
T Consensus 511 nmfdllkee~eVvd~P-~a~pl~~~~G~i~fsnvtF~Y~p--~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRf 587 (790)
T KOG0056|consen 511 NMFDLLKEEPEVVDLP-GAPPLKVTQGKIEFSNVTFAYDP--GKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRF 587 (790)
T ss_pred HHHHHhhcCchhhcCC-CCCCccccCCeEEEEEeEEecCC--CCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHH
Confidence 9999999877764432 22223346799999999999963 57899999999999999999999999999999999999
Q ss_pred CCCCccEEEECCeecCCccHHHHhccEEEEecCCcCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHHHHHhCCCCCCcc
Q 000406 725 YDPTKGLITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQ 804 (1560)
Q Consensus 725 ~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Tv~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~ 804 (1560)
++.++|+|.|||+||+......+|+.||+||||..||++||..||.++++.++++++.+|++.+++||.|..+|+||+|.
T Consensus 588 fdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~ 667 (790)
T KOG0056|consen 588 FDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTR 667 (790)
T ss_pred hhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCccccccCCEEEEEeC
Q 000406 805 VGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQ 884 (1560)
Q Consensus 805 ~~~~g~~LSgGQrQRialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~D~i~vl~~ 884 (1560)
+||+|-.|||||||||||||+++++|.|++|||+|||||..+|+.|+.++.++..++|.|+|+||++++-+||.|+|+++
T Consensus 668 VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~ 747 (790)
T KOG0056|consen 668 VGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVISN 747 (790)
T ss_pred hhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEecChhhHhhh-cchHHHHHHHHHh
Q 000406 885 GSVVEIGNHRQLLER-GGAYHDLVKLASE 912 (1560)
Q Consensus 885 G~iv~~G~~~~l~~~-~~~~~~l~~~~~~ 912 (1560)
|+|+|.|+|+||+.+ +|.|++||+.++.
T Consensus 748 G~IvErG~HeeLl~rdgG~Ya~MWq~qqa 776 (790)
T KOG0056|consen 748 GRIVERGRHEELLKRDGGAYADMWQAQQA 776 (790)
T ss_pred CeEeecCcHHHHHhccCCcHHHHHHHHHh
Confidence 999999999999987 7999999986654
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-74 Score=687.99 Aligned_cols=482 Identities=28% Similarity=0.448 Sum_probs=366.8
Q ss_pred cEEEEEEEEEcCCCCC-ccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCC----ccEEEECCeecCCccHHH
Q 000406 672 KIEFKGVTFAYPSRPE-TVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPT----KGLITLDGHDLKSLQVKW 746 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~~~-~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~----~G~I~i~g~~i~~~~~~~ 746 (1560)
-++++|++..|..... ..+++||||+|.+||++||||+|||||||+.++|.|+.++. +|+|.++|.|+..++...
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 5899999999975532 25899999999999999999999999999999999999887 899999999998887654
Q ss_pred H---h-ccEEEEecCCc-Cccc--cHHHHHh----cCCCCCCHHHHHHHHHHhhhHHHHHhCCCCCCccc--CCCCCCCC
Q 000406 747 L---R-TQIGMVGQEPI-LFAT--SILENVL----MGKENATMKEAVAACKAASAHSFISELPLGYDTQV--GDRGTQLS 813 (1560)
Q Consensus 747 l---r-~~i~~v~Q~~~-lf~~--Tv~eNi~----~g~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~--~~~g~~LS 813 (1560)
+ | ++|+||||+|. .++. ||.+-|. ..... +.++.. ..+.+.++.. |+.... +..+.+||
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~-~~~ea~-----~~a~elL~~V--gl~~~~~~~~yPheLS 156 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKG-SRAEAR-----KRAVELLEQV--GLPDPERRDRYPHQLS 156 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccc-cHHHHH-----HHHHHHHHHc--CCCChhhhccCCcccC
Confidence 4 3 47999999985 4543 6655543 22111 111111 1112223322 222222 45789999
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCcccccc-CCEEEEEeCCeEEEe
Q 000406 814 GGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKIS--VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEI 890 (1560)
Q Consensus 814 gGQrQRialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~ 890 (1560)
||||||+.||+||+.+|++||+||||++||+.++..|.+.|+++. .|.++|+|||++..+.+ ||||+||++|+++|.
T Consensus 157 GG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~ 236 (539)
T COG1123 157 GGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVET 236 (539)
T ss_pred chHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEe
Confidence 999999999999999999999999999999999999999999884 58999999999999977 999999999999999
Q ss_pred cChhhHhhhcc-hHHHHHHHHHhhccCccccchhcccccchhhhhhhHHHhhhhhhhhhhhhhhhhhhhHHHhhhhHhhh
Q 000406 891 GNHRQLLERGG-AYHDLVKLASEAVSQPQSKQKDAKRGIEFSIYEKSVIEVSRSRYANEVSKSKYFKSMQAEIQTVEEEQ 969 (1560)
Q Consensus 891 G~~~~l~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 969 (1560)
|+.++++.+.. .|....-
T Consensus 237 G~~~~i~~~p~hpYT~~Ll------------------------------------------------------------- 255 (539)
T COG1123 237 GPTEEILSNPQHPYTRGLL------------------------------------------------------------- 255 (539)
T ss_pred cCHHHHHhccCCcccHHHH-------------------------------------------------------------
Confidence 99999875321 1100000
Q ss_pred hCCCCchhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHHH
Q 000406 970 QKPRPRKFQLSEIWKLQRPEFAMIIFGFILGMHAGAILSIFPLILGQALQVYFDDTASTLRRDVRYLSLALVGLGFGCII 1049 (1560)
Q Consensus 970 ~~~~~~~~~~~~l~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 1049 (1560)
.
T Consensus 256 --------------~----------------------------------------------------------------- 256 (539)
T COG1123 256 --------------A----------------------------------------------------------------- 256 (539)
T ss_pred --------------h-----------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccCChHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 1050 FMTGQQGFCGWAGTKLTMRVRELLFRSILKQEPGWFDFEENSTGVLVSRLSIDSISFRSVLGDRFSVLLMGLSSAAVGLG 1129 (1560)
Q Consensus 1050 ~~~~~~~~~~~~~~~~~~~Lr~~l~~~ll~~~~~ffd~~~~~~G~il~R~s~Di~~i~~~l~~~l~~~l~~~~~~i~~l~ 1129 (1560)
.-+. .+.. ...
T Consensus 257 ------------------------------a~p~-~~~~-~~~------------------------------------- 267 (539)
T COG1123 257 ------------------------------AVPR-LGDE-KII------------------------------------- 267 (539)
T ss_pred ------------------------------hCCC-cccc-ccc-------------------------------------
Confidence 0000 0000 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHhcchhHHHhccchHHHHHHHHHHHhhhHH
Q 000406 1130 VSLVLNWRLTLVAAALTPFTLGASYLSLIINVGPKIDNSSYAKASSIASGAVSNIRTVTTFSAQEQIINSFDKALSEPKK 1209 (1560)
Q Consensus 1130 ~~~~~~~~l~lv~l~~ipl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~e~~~~~~~~~~~~~~~~ 1209 (1560)
T Consensus 268 -------------------------------------------------------------------------------- 267 (539)
T COG1123 268 -------------------------------------------------------------------------------- 267 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 000406 1210 KSVKRSQILGLTLGFSQGAMYVAYTFTLWFGAYLVKQGHASFGVVYKIFLILVLSSFSVGQLAGLAPDTSMAATAIPAVL 1289 (1560)
Q Consensus 1210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~s~~ri~ 1289 (1560)
T Consensus 268 -------------------------------------------------------------------------------- 267 (539)
T COG1123 268 -------------------------------------------------------------------------------- 267 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhccCCccccccccccCCCCCccEEEEEEEEEcCCC--------CCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHH
Q 000406 1290 QITKRKPLIDNVKGRKLERSKPLGIELKMVTFTYPSR--------PEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWL 1361 (1560)
Q Consensus 1290 ~i~~~~~~~~~~~~~~~~~~~~~~I~~~nVsf~Y~~~--------~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~l 1361 (1560)
..+. .. ......-++++||+.+|..+ ....+++||||+|++||++||||+||||||||.++
T Consensus 268 ----~~~~----~~---~~~~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~ 336 (539)
T COG1123 268 ----RLPR----RG---PLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARI 336 (539)
T ss_pred ----cccc----cc---ccccCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHH
Confidence 0000 00 00012248899999999742 13468999999999999999999999999999999
Q ss_pred HhcccCCCccEEEECCEe--cCCCCHHHHhhceEEEcCCCC--CC-CccHHHHHhcCC---CCC----CHHHHHHHHHHH
Q 000406 1362 IQRFYDPNQGKVMIEGVD--LREINVKWLRKQTALVGQEPA--LF-AGTIRDNIALGN---PKA----SWAEIEEAAEEA 1429 (1560)
Q Consensus 1362 L~rl~~p~~G~I~IdGvd--i~~i~l~~LR~~I~~VpQdp~--LF-~gTIreNL~~g~---~~~----sd~eI~~al~~a 1429 (1560)
|+|+++|++|.|.++|.| ++.-....+|+++-+|+|||+ |- ..||+++|.-.- ... ..+.+.+.++.+
T Consensus 337 i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~V 416 (539)
T COG1123 337 LAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELV 416 (539)
T ss_pred HhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHc
Confidence 999999999999999977 333335668889999999997 33 369999986321 111 112355556666
Q ss_pred hHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CceEEEE
Q 000406 1430 YIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSK--RATTIVV 1507 (1560)
Q Consensus 1430 ~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~--~~TvI~I 1507 (1560)
+|.+- .+......||||||||+||||||..+|+|||+|||||+||+.+.++|.+.|+++.+ +.|.|+|
T Consensus 417 gL~~~----------~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfI 486 (539)
T COG1123 417 GLPPE----------FLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFI 486 (539)
T ss_pred CCCHH----------HHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEE
Confidence 65531 23344557999999999999999999999999999999999999999999998754 5899999
Q ss_pred ecChHHHhh-cCEEEEEeCCEEEEecCHHHHHhhccChHHHHHHHH
Q 000406 1508 AHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLASHLNGVYASLVRA 1552 (1560)
Q Consensus 1508 AHRlsti~~-aDrIlVLd~G~IvE~Gt~~eLl~~~~~g~y~~l~~~ 1552 (1560)
||+++.++. ||||+||++|+|||.|+.+++.+. ....|.+...+
T Consensus 487 SHDl~vV~~i~drv~vm~~G~iVE~G~~~~v~~~-p~h~Ytr~L~~ 531 (539)
T COG1123 487 SHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFEN-PQHPYTRKLLA 531 (539)
T ss_pred eCCHHHHHhhCceEEEEECCeEEEeCCHHHHhcC-CCChHHHHHHH
Confidence 999999988 999999999999999999998874 56667665443
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-71 Score=704.30 Aligned_cols=536 Identities=23% Similarity=0.293 Sum_probs=450.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 990 FAMIIFGFILGMHAGAILSIFPLILGQALQVYFDDTASTLRRDVRYLSLALVGLGFGCIIFMTGQQGFCGWAGTKLTMRV 1069 (1560)
Q Consensus 990 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L 1069 (1560)
++.++..++++++..++....|+++..+++....... ......+.++++++.++..++.+++.++....+.++..++
T Consensus 5 k~~~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (544)
T TIGR01842 5 KSTFIIVGLFSFVINILMLAPPLYMLQVYDRVLTSGS---VPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGAL 81 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666777777788888888776542211 1122333444444555566777888888889999999999
Q ss_pred HHHHHHHHHcCCCCCcccccCChHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 1070 RELLFRSILKQEPGWFDFEENSTGVLVSRLSIDSISFRSVLGDRFSVLLMGLSSAAVGLGVSLVLNWRLTLVAAALTPFT 1149 (1560)
Q Consensus 1070 r~~l~~~ll~~~~~ffd~~~~~~G~il~R~s~Di~~i~~~l~~~l~~~l~~~~~~i~~l~~~~~~~~~l~lv~l~~ipl~ 1149 (1560)
|..+|+++++.|+.. .+...+++.+|++.+++.+.......+...+..++.++++++++|.+++++++.+|++
T Consensus 82 r~~~~~~ll~~~~~~-------~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~ 154 (544)
T TIGR01842 82 NQPIFAASFSATLRR-------GKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPIYLLVCFLLHPWIGILALGGAVVL 154 (544)
T ss_pred HHHHHHHHhcCcccC-------ccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999999998742 3567889999999999988774444443444444455678899999999888777766
Q ss_pred HHHHHHHHHH-hcchhhhhhhHHHHHHHHHHHhcchhHHHhccchHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 000406 1150 LGASYLSLII-NVGPKIDNSSYAKASSIASGAVSNIRTVTTFSAQEQIINSFDKALSEPKKKSVKRSQILGLTLGFSQGA 1228 (1560)
Q Consensus 1150 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1228 (1560)
++..++.... ....+..+....+..+.+.|+++|+++||+|+.++.+.++|++..++..+...+.....+....+...+
T Consensus 155 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (544)
T TIGR01842 155 VGLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYF 234 (544)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544333222 222233355667778999999999999999999999999999999998888888887777777777777
Q ss_pred HHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccCCccccccccccCC
Q 000406 1229 MYVAYTFTLWFGAYLVKQGHASFGVVYKIFLILVLSSFSVGQLAGLAPDTSMAATAIPAVLQITKRKPLIDNVKGRKLER 1308 (1560)
Q Consensus 1229 ~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~s~~ri~~i~~~~~~~~~~~~~~~~~ 1308 (1560)
..+..++++++|++++..|.+++|.+++++.+......|+..+...+..+..+..+.+|+.++++.+++.+.. ...+
T Consensus 235 ~~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~--~~~~- 311 (544)
T TIGR01842 235 RIVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPA--MPLP- 311 (544)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCC--CCCC-
Confidence 7777888889999999999999999999999999999999999999999999999999999998765443211 1111
Q ss_pred CCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHH
Q 000406 1309 SKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWL 1388 (1560)
Q Consensus 1309 ~~~~~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~L 1388 (1560)
...+.|+++||+|+|++. +.++|+|+||+|+|||++||||+||||||||+++|+|+++|++|+|.+||+|+.+++.+.+
T Consensus 312 ~~~~~i~~~~v~~~y~~~-~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~ 390 (544)
T TIGR01842 312 EPEGHLSVENVTIVPPGG-KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETF 390 (544)
T ss_pred CCCCeEEEEEEEEEcCCC-CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHH
Confidence 123469999999999753 3469999999999999999999999999999999999999999999999999999999999
Q ss_pred hhceEEEcCCCCCCCccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHc
Q 000406 1389 RKQTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAIL 1468 (1560)
Q Consensus 1389 R~~I~~VpQdp~LF~gTIreNL~~g~~~~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLARALL 1468 (1560)
|++++||||||.+|++||||||.++.+++++++++++++.+++++++.++|+|+||.+||+|.+|||||||||||||||+
T Consensus 391 ~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall 470 (544)
T TIGR01842 391 GKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALY 470 (544)
T ss_pred hhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999877778999999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCceEEEEecChHHHhhcCEEEEEeCCEEEEecCHHHHHh
Q 000406 1469 KGSRVLLLDEASSALDLESEKHVQDALRKVS-KRATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETLLA 1539 (1560)
Q Consensus 1469 r~p~ILILDEaTSaLD~~Te~~I~~~L~~~~-~~~TvI~IAHRlsti~~aDrIlVLd~G~IvE~Gt~~eLl~ 1539 (1560)
++|+|||||||||+||+++++.|.+.|++.. +++|+|+||||++++..||+|++|++|+++|.|+|+||++
T Consensus 471 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 471 GDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred cCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 9999999999999999999999999999875 6799999999999999999999999999999999999986
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-71 Score=766.26 Aligned_cols=510 Identities=18% Similarity=0.223 Sum_probs=423.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhccCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 395 CLLMTVLAAIVMMGAYLEITCWRLVGERSAQRIRTKYLRAVLRQDIAFFDTEVSTSDIMHGISSDIAQIQEVMGEKVAHF 474 (1560)
Q Consensus 395 ~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~lr~~l~~~ll~~~l~ffd~~~~~G~i~~r~s~Dv~~i~~~l~~~l~~~ 474 (1560)
++++++++++..++.+++.+++.+.+.++..++|.+++++++++|+.||++. ++|+++|||++|++.+++.++..+..+
T Consensus 928 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~-~~G~ilnRfs~Di~~id~~l~~~~~~~ 1006 (1490)
T TIGR01271 928 FYIYVGTADSVLALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNTM-KAGRILNRFTKDMAIIDDMLPLTLFDF 1006 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445556667777778888999999999999999999999999866 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHH
Q 000406 475 AHNIFTFICGYTVGFLRSWKVSLVVLSVTPLMMFCGMAYKAVYVGLTSKEEASYRRAGSVAEQAISSIRTVFSFVAEDHF 554 (1560)
Q Consensus 475 i~~i~~~i~~~ii~~~~s~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIka~~~e~~~ 554 (1560)
+..++.+++.++++++++|++++++++++++++++..+|.+..+.+.+......++..+++.|++.|+.+||+|++++.+
T Consensus 1007 ~~~~~~~i~~l~~i~~~~p~l~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~ 1086 (1490)
T TIGR01271 1007 IQLTLIVLGAIFVVSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYF 1086 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHH
Confidence 99999999999999999998877666666666667778888888888888888899999999999999999999999999
Q ss_pred HHHHHHHHHhHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 555 AVRYAGLLADSIPFGAKLGFAKGAGMGVIYLVTYATWALAFWYGSILVARKELSGGAAIACFFGVNVGGRGLALSLSYFA 634 (1560)
Q Consensus 555 ~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~ls~g~~~~~l~~~~~~~~~l~~~~~~~~ 634 (1560)
.+++.+..+...+..........+......++..+..+++.++ .+....++.|.+..++.+...+..++..++..+.
T Consensus 1087 ~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~i~~~~~~~~~~l---~~~~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~ 1163 (1490)
T TIGR01271 1087 ETLFHKALNLHTANWFLYLSTLRWFQMRIDIIFVFFFIAVTFI---AIGTNQDGEGEVGIILTLAMNILSTLQWAVNSSI 1163 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998886543322222222111111111111111111111 1111223445555555555566667888888899
Q ss_pred HHHHHHHHHHHHHHHHccCCCCCCCCCC----------------CCcCCCCcccEEEEEEEEEcCCCCCccccccceeEe
Q 000406 635 QFAQGTVAATRVFEIIDRVPEIDPYNSE----------------GRKLSSVSGKIEFKGVTFAYPSRPETVILRSLNLVI 698 (1560)
Q Consensus 635 ~~~~a~~a~~Ri~~~l~~~~~~~~~~~~----------------~~~~~~~~g~i~~~~vs~~y~~~~~~~vL~~isl~i 698 (1560)
+++.++.|++|+.++++.+++....... ....++..|.|+|+||+|+|+.. .+++|+||||+|
T Consensus 1164 ~le~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~-~~~vL~~is~~I 1242 (1490)
T TIGR01271 1164 DVDGLMRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEA-GRAVLQDLSFSV 1242 (1490)
T ss_pred HHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCC-CcceeeccEEEE
Confidence 9999999999999999765543211000 00112346889999999999753 357999999999
Q ss_pred cCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHHHhccEEEEecCCcCccccHHHHHhcCCCCCCH
Q 000406 699 PSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENATM 778 (1560)
Q Consensus 699 ~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Tv~eNi~~g~~~~~~ 778 (1560)
+|||++||||+||||||||+++|+|+++ .+|+|+|||+|+++++.+.+|++|+||||+|.||+||||+||.+.. ..++
T Consensus 1243 ~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~-~~td 1320 (1490)
T TIGR01271 1243 EGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYE-QWSD 1320 (1490)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCccc-CCCH
Confidence 9999999999999999999999999997 7999999999999999999999999999999999999999998764 4689
Q ss_pred HHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc
Q 000406 779 KEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKIS 858 (1560)
Q Consensus 779 ~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~ 858 (1560)
++++++++.+++++++.++|.|+||.++++|.+|||||||||||||||+++|+|||||||||+||+++++.|++.|++..
T Consensus 1321 eei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~ 1400 (1490)
T TIGR01271 1321 EEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF 1400 (1490)
T ss_pred HHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCcEEEEEecCccccccCCEEEEEeCCeEEEecChhhHhhhcchHHHHHHHHH
Q 000406 859 VGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLERGGAYHDLVKLAS 911 (1560)
Q Consensus 859 ~~~tvi~itH~l~~i~~~D~i~vl~~G~iv~~G~~~~l~~~~~~~~~l~~~~~ 911 (1560)
+++|||+||||++++.+||+|+||++|+|+|.|+|++|+++++.|+++++...
T Consensus 1401 ~~~TvI~IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~~~~~f~~l~~~~~ 1453 (1490)
T TIGR01271 1401 SNCTVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLNETSLFKQAMSAAD 1453 (1490)
T ss_pred CCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHHcCCcHHHHHHHHhC
Confidence 99999999999999999999999999999999999999988899999987554
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-71 Score=700.87 Aligned_cols=526 Identities=23% Similarity=0.325 Sum_probs=452.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 346 LVLLGCIGALINGGALPWYSYFFGNFVNKIANESSDPDKTQMMKDAEKICLLMTVLAAIVMMGAYLEITCWRLVGERSAQ 425 (1560)
Q Consensus 346 ~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~ 425 (1560)
.++++++++++.+++.+..+++.++++|...... .. ......+++++++++++..++.++..+...+++.+...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (529)
T TIGR02857 4 ALALLGLLGALGALLIIAQAWLLARVIDGLISAG--EP----LAELLPALGALALAVLLRALLGWLGERAAARAAAAVKS 77 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC--CC----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777778888889999999764111 10 12233345555666677778888888889999999999
Q ss_pred HHHHHHHHHHHhcCchhhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 426 RIRTKYLRAVLRQDIAFFDTEVSTSDIMHGISSDIAQIQEVMGEKVAHFAHNIFTFICGYTVGFLRSWKVSLVVLSVTPL 505 (1560)
Q Consensus 426 ~lr~~l~~~ll~~~l~ffd~~~~~G~i~~r~s~Dv~~i~~~l~~~l~~~i~~i~~~i~~~ii~~~~s~~l~lv~l~~~pl 505 (1560)
++|.+++++++++|..+|+.. ++|++++|+++|++.+++.+...+..++..++.+++.+++++.++|.+++++++++|+
T Consensus 78 ~lr~~l~~~l~~~~~~~~~~~-~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l 156 (529)
T TIGR02857 78 QLRERLLAAVAALGPGWLQGR-PSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPL 156 (529)
T ss_pred HHHHHHHHHHHhCCchhhccC-ChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999999755 8999999999999999999998889999998888888999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHhHhHHHhHHHHHHHHHHHHHHH
Q 000406 506 MMFCGMAYKAVYVGLTSKEEASYRRAGSVAEQAISSIRTVFSFVAEDHFAVRYAGLLADSIPFGAKLGFAKGAGMGVIYL 585 (1560)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIka~~~e~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~ 585 (1560)
+.++...+.+......++..+..++..+.+.|.++|+++||+|++|+.+.++|.+..++..+...+..........+..+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (529)
T TIGR02857 157 IPIFMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLEL 236 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87777777777777777788888889999999999999999999999999999998888777666666665555555555
Q ss_pred HHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCc
Q 000406 586 VTYATWALAFWYGSILVARKELSGGAAIACFFGVNVGGRGLALSLSYFAQFAQGTVAATRVFEIIDRVPEIDPYNSEGRK 665 (1560)
Q Consensus 586 ~~~~~~~~~~~~g~~lv~~g~ls~g~~~~~l~~~~~~~~~l~~~~~~~~~~~~a~~a~~Ri~~~l~~~~~~~~~~~~~~~ 665 (1560)
+..+..+++..++++.+..|.++.|.++++..+......++..+...+..+.++..+++|+.++++.+++..+ ....
T Consensus 237 ~~~~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~---~~~~ 313 (529)
T TIGR02857 237 FATLSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAG---KAPV 313 (529)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC---CcCC
Confidence 5555555544555666668999999999988888788888888888999999999999999999985332111 1111
Q ss_pred CCCCcccEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHH
Q 000406 666 LSSVSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVK 745 (1560)
Q Consensus 666 ~~~~~g~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~ 745 (1560)
..+..+.|+++||+|+|++. ++++|+|+||+|+|||+++|+||||||||||+++|+|+++|++|+|.+||.|+++++.+
T Consensus 314 ~~~~~~~i~~~~v~f~y~~~-~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~ 392 (529)
T TIGR02857 314 TAAPAPSLEFSGLSVAYPGR-RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADAD 392 (529)
T ss_pred CCCCCCeEEEEEEEEECCCC-CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHH
Confidence 11123579999999999853 24689999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccEEEEecCCcCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHH
Q 000406 746 WLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARA 825 (1560)
Q Consensus 746 ~lr~~i~~v~Q~~~lf~~Tv~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARA 825 (1560)
++|++|+||+|+|++|++||+|||.++.+..++++++++++.++++++++++|+|+||.+|++|.+||||||||++||||
T Consensus 393 ~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRa 472 (529)
T TIGR02857 393 SWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARA 472 (529)
T ss_pred HHHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHH
Confidence 99999999999999999999999999988788999999999999999999999999999999999999999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCccccccCCEEEEE
Q 000406 826 MIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKNANTIVVL 882 (1560)
Q Consensus 826 l~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~D~i~vl 882 (1560)
++++|+|||||||||+||+++++.+.+.++++.+++|+|+||||++.++.||+|++|
T Consensus 473 l~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 473 FLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred HhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 999999999999999999999999999999988899999999999999999999986
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-71 Score=651.13 Aligned_cols=543 Identities=27% Similarity=0.367 Sum_probs=442.6
Q ss_pred HhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000406 358 GGALPWYSYFFGNFVNKIANESSDPDKTQMMKDAEKICLLMTVLAAIVMMGAYLEITCWRLVGERSAQRIRTKYLRAVLR 437 (1560)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~lr~~l~~~ll~ 437 (1560)
-......+.++...++...... ... .........+..|+++.+...++..++...+.++.+++....-.++|++++.
T Consensus 43 K~l~v~vp~~~~~~id~l~~~~--~~~-a~~~~~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ 119 (591)
T KOG0057|consen 43 KILNVQVPFIFKLIIDGLNDAD--GNP-AVLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMS 119 (591)
T ss_pred hHhheehHHHHHHHHhhhhhcc--cCc-chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444555667777777664111 111 1122233456667778888889999999999999999999999999999999
Q ss_pred cCchhhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 438 QDIAFFDTEVSTSDIMHGISSDIAQIQEVMGEKVAHFAHNIFTFICGY-TVGFLRSWKVSLVVLSVTPLMMFCGMAYKAV 516 (1560)
Q Consensus 438 ~~l~ffd~~~~~G~i~~r~s~Dv~~i~~~l~~~l~~~i~~i~~~i~~~-ii~~~~s~~l~lv~l~~~pl~~~~~~~~~~~ 516 (1560)
+++++|.+. .+|++.+.+..-...|.+.+...+..++..++-+.... ++..-+.+..+++++..+..+..+......+
T Consensus 120 ld~~~~~~~-~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~ 198 (591)
T KOG0057|consen 120 LDLSFFLSR-GTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRW 198 (591)
T ss_pred hhHHhhcCC-CcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhH
Confidence 999999755 89999999999988888888776666665555443332 2222334444444444444444444445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHhHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 517 YVGLTSKEEASYRRAGSVAEQAISSIRTVFSFVAEDHFAVRYAGLLADSIPFGAKLGFAKGAGMGVIYLVTYATWALAFW 596 (1560)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~E~l~gi~tIka~~~e~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (1560)
..+.+.+...+...+.+.+.+.|.|.++||+|+-|+++.++|...+.+....+.+.....++....-.++.....+.+.+
T Consensus 199 Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~~~~im~ 278 (591)
T KOG0057|consen 199 RNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVALTFIMV 278 (591)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777778888889999999999999999999999999999998887776665554444333333333344444555
Q ss_pred HHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCcCCCCcccEEEE
Q 000406 597 YGSILVARKELSGGAAIACFFGVNVGGRGLALSLSYFAQFAQGTVAATRVFEIIDRVPEIDPYNSEGRKLSSVSGKIEFK 676 (1560)
Q Consensus 597 ~g~~lv~~g~ls~g~~~~~l~~~~~~~~~l~~~~~~~~~~~~a~~a~~Ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~ 676 (1560)
++..-+..+.++.|.++.....+.....++..+...+..+.+++.-+.-++...+....+. ....+....++.|+|+
T Consensus 279 l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~---~~~~~i~~~~~~I~F~ 355 (591)
T KOG0057|consen 279 LGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQ---EAALPIELFGGSIEFD 355 (591)
T ss_pred HHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhh---hccCCcccCCCcEEEE
Confidence 6666677889999999988888888888888888888888888887777766544322111 1111223356789999
Q ss_pred EEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHHHhccEEEEec
Q 000406 677 GVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIGMVGQ 756 (1560)
Q Consensus 677 ~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q 756 (1560)
||+|+|+. ++++|+++||+|++||+|||||+|||||||++++|+|+++ ++|+|+|||+|+++++++.+|+-||||||
T Consensus 356 dV~f~y~~--k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQ 432 (591)
T KOG0057|consen 356 DVHFSYGP--KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQ 432 (591)
T ss_pred eeEEEeCC--CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCC
Confidence 99999973 4669999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred CCcCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHHhccCCCEEEEe
Q 000406 757 EPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLD 836 (1560)
Q Consensus 757 ~~~lf~~Tv~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARAl~~~p~illLD 836 (1560)
|..||++||.+||.+|++..+++++.++|+.+++||.+.++|+||+|.+||+|..|||||||||+||||++++|+|++||
T Consensus 433 d~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~D 512 (591)
T KOG0057|consen 433 DSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLD 512 (591)
T ss_pred cccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCccccccCCEEEEEeCCeEEEecChhhHhhhcchHHHHHHHH
Q 000406 837 EPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLERGGAYHDLVKLA 910 (1560)
Q Consensus 837 Epts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~D~i~vl~~G~iv~~G~~~~l~~~~~~~~~l~~~~ 910 (1560)
||||+||.+||+.+.+.|.....++|+|+|.||++++++||+|++|++|++.|.|+|+||++..+.|.++|..+
T Consensus 513 EaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~~s~~~~~~w~~~ 586 (591)
T KOG0057|consen 513 EATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLAPSELYADLWTTQ 586 (591)
T ss_pred CcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhhhhhHHHHHhccc
Confidence 99999999999999999999888999999999999999999999999999999999999999888999998654
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-71 Score=645.90 Aligned_cols=561 Identities=22% Similarity=0.322 Sum_probs=455.5
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 336 FKYSTKLDMILVLLGCIGALINGGALPWYSYFFGNFVNKIANESSDPDKTQMMKDAEKICLLMTVLAAIVMMGAYLEITC 415 (1560)
Q Consensus 336 ~~y~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~ 415 (1560)
++.+++ .++.++++++.+++..+.....-..-|+++..-..... . ..-.+.......=++++...+..|.+...
T Consensus 8 i~l~~~-~~~~l~Lgi~l~~~t~lasigLl~lSGwfisasAiag~----~-~~f~~~~p~a~VR~~aI~Rt~~RY~ERlv 81 (573)
T COG4987 8 LRLYKR-HKFGLLLGIVLAILTLLASIGLLTLSGWFISASAIAGL----A-YIFNVMLPSAGVRGLAILRTAARYVERLV 81 (573)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccH----H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444 44556666666666655555544455666654332110 0 01111122233345667777888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchhhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 416 WRLVGERSAQRIRTKYLRAVLRQDIAFFDTEVSTSDIMHGISSDIAQIQEVMGEKVAHFAHNIFTFICGYTVGFLRSWKV 495 (1560)
Q Consensus 416 ~~~~~~~~~~~lr~~l~~~ll~~~l~ffd~~~~~G~i~~r~s~Dv~~i~~~l~~~l~~~i~~i~~~i~~~ii~~~~s~~l 495 (1560)
.+....++..+||.++|+++...+..-.. ...+||++||+..|++.+|+.+-..+.+.+..+...++..+...+++|.+
T Consensus 82 sH~AtfrvL~~lRv~~f~kl~p~sp~~~~-r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f~~~~~ 160 (573)
T COG4987 82 SHDATFRVLSALRVRLFEKLEPLSPALLL-RYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPL 160 (573)
T ss_pred hhHHHHHHHHHHHHHHHHhhccCChHHHH-hcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHH
Confidence 88899999999999999999998888774 45899999999999999999999999999988888888777777888888
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHhHhHHHhHHHH
Q 000406 496 SLVVLS-VTPLMMFCGMAYKAVYVGLTSKEEASYRRAGSVAEQAISSIRTVFSFVAEDHFAVRYAGLLADSIPFGAKLGF 574 (1560)
Q Consensus 496 ~lv~l~-~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIka~~~e~~~~~~~~~~~~~~~~~~~k~~~ 574 (1560)
++.+.. ++.+++++...+.+..++..++....+....+.+.|.+.|....+.||.++.+.+.+........+...|...
T Consensus 161 Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~~ 240 (573)
T COG4987 161 ALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQAR 240 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 765543 3344455556666666777777788888888999999999999999999999999999988888888888888
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcc
Q 000406 575 AKGAGMGVIYLVTYATWA-LAFWYGSILVARKELSGGAAIACFFGVNVGGRGLALSL-SYFAQFAQGTVAATRVFEIIDR 652 (1560)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~-~~~~~g~~lv~~g~ls~g~~~~~l~~~~~~~~~l~~~~-~~~~~~~~a~~a~~Ri~~~l~~ 652 (1560)
+.++......++..++.+ +.+|.++ .+-.|..+.-.+..+++.+.....++..+. ..+..+.+...|+.|+.++++.
T Consensus 241 ~~~~~~a~~~l~~g~~v~~~l~w~a~-~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q 319 (573)
T COG4987 241 FTGLSDAILLLIAGLLVIGLLLWMAA-QVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQ 319 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-cCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHHHhhhccC
Confidence 887777766666555544 4455544 234455553333333333233333444444 5667889999999999999987
Q ss_pred CCCCCCCCCCCCcCCCCcccEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEE
Q 000406 653 VPEIDPYNSEGRKLSSVSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732 (1560)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~g~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I 732 (1560)
+|+.... . ...+.....++++||+|+|++. ++++|+|+||++++||++||+|+||||||||+++|.|.++|++|+|
T Consensus 320 ~~e~~~~--~-~~~~~~~~~l~~~~vsF~y~~~-~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i 395 (573)
T COG4987 320 KPEVTFP--D-EQTATTGQALELRNVSFTYPGQ-QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSI 395 (573)
T ss_pred CcccCCC--c-cccCCccceeeeccceeecCCC-ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCee
Confidence 6654332 1 1111122279999999999964 4679999999999999999999999999999999999999999999
Q ss_pred EECCeecCCccHHHHhccEEEEecCCcCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCC
Q 000406 733 TLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQL 812 (1560)
Q Consensus 733 ~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Tv~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~L 812 (1560)
.++|.++..++.+.+|+.|++++|.+.||++|+|+|+.++++++++++++++++.+++++++++.|+|++|.+||.|..|
T Consensus 396 ~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~L 475 (573)
T COG4987 396 TLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRL 475 (573)
T ss_pred eECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCccccccCCEEEEEeCCeEEEecC
Q 000406 813 SGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGN 892 (1560)
Q Consensus 813 SgGQrQRialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~D~i~vl~~G~iv~~G~ 892 (1560)
|||||||++|||+|++|++++||||||.+||+.||+.+.+.|.+..+|||+|+||||+..+..||||+||++|+++|+|+
T Consensus 476 SGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~ 555 (573)
T COG4987 476 SGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGT 555 (573)
T ss_pred CchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhcCEEEEEECCeeeecCC
Confidence 99999999999999999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred hhhHhhhcchHHHHHH
Q 000406 893 HRQLLERGGAYHDLVK 908 (1560)
Q Consensus 893 ~~~l~~~~~~~~~l~~ 908 (1560)
|.+|++++|.|+++++
T Consensus 556 ~~~Ll~~~g~~~~l~q 571 (573)
T COG4987 556 HAELLANNGRYKRLYQ 571 (573)
T ss_pred HHhhhccccHHHHHhc
Confidence 9999999999998864
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-69 Score=688.90 Aligned_cols=533 Identities=23% Similarity=0.315 Sum_probs=451.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 347 VLLGCIGALINGGALPWYSYFFGNFVNKIANESSDPDKTQMMKDAEKICLLMTVLAAIVMMGAYLEITCWRLVGERSAQR 426 (1560)
Q Consensus 347 ~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ 426 (1560)
+++.++++++..++..+.++++++++|.+.... + ...+..++++++++.++..++.+++.++....+.++..+
T Consensus 8 ~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~---~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (544)
T TIGR01842 8 FIIVGLFSFVINILMLAPPLYMLQVYDRVLTSG---S----VPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGA 80 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC---c----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666666677778999998765321 1 112223444455555666677788888888899999999
Q ss_pred HHHHHHHHHHhcCchhhccCCChhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 427 IRTKYLRAVLRQDIAFFDTEVSTSDIMHGISSDIAQIQEVMGE-KVAHFAHNIFTFICGYTVGFLRSWKVSLVVLSVTPL 505 (1560)
Q Consensus 427 lr~~l~~~ll~~~l~ffd~~~~~G~i~~r~s~Dv~~i~~~l~~-~l~~~i~~i~~~i~~~ii~~~~s~~l~lv~l~~~pl 505 (1560)
+|.+++++++++|+.. .+...+++.+|++.+++.+.. .+..++..++.++ .+++++.++|++++++++++|+
T Consensus 81 lr~~~~~~ll~~~~~~------~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~l~li~l~~~~l 153 (544)
T TIGR01842 81 LNQPIFAASFSATLRR------GKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPI-YLLVCFLLHPWIGILALGGAVV 153 (544)
T ss_pred HHHHHHHHHhcCcccC------ccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999999999842 245678899999999998877 3444444444444 4567889999999888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHhHhHHHhHHHHHHHHHHHHHHH
Q 000406 506 MMFCGMAYKAVYVGLTSKEEASYRRAGSVAEQAISSIRTVFSFVAEDHFAVRYAGLLADSIPFGAKLGFAKGAGMGVIYL 585 (1560)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIka~~~e~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~ 585 (1560)
++++..++.+..++..++..+..++..+.+.|.++|+++||+|++|+.+.++|.+..++..+...+.....+....+..+
T Consensus 154 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (544)
T TIGR01842 154 LVGLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKY 233 (544)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77776666777777777778888888999999999999999999999999999999988877777777776666666666
Q ss_pred HHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCc
Q 000406 586 VTYATWALAFWYGSILVARKELSGGAAIACFFGVNVGGRGLALSLSYFAQFAQGTVAATRVFEIIDRVPEIDPYNSEGRK 665 (1560)
Q Consensus 586 ~~~~~~~~~~~~g~~lv~~g~ls~g~~~~~l~~~~~~~~~l~~~~~~~~~~~~a~~a~~Ri~~~l~~~~~~~~~~~~~~~ 665 (1560)
+..+..++++++|++++.+|.+++|.++++..++..+..++..+...+..+..+..+++|+.++++.+++.++ ...
T Consensus 234 ~~~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~----~~~ 309 (544)
T TIGR01842 234 FRIVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDP----AMP 309 (544)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccC----CCC
Confidence 6666677788899999999999999999999888888889999999999999999999999999976443211 111
Q ss_pred CCCCcccEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHH
Q 000406 666 LSSVSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVK 745 (1560)
Q Consensus 666 ~~~~~g~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~ 745 (1560)
.+...+.|+++||+|+|+.. ++++|+|+||+|+|||+++|+||||||||||+++|+|+++|++|+|.+||+++.+++..
T Consensus 310 ~~~~~~~i~~~~v~~~y~~~-~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~ 388 (544)
T TIGR01842 310 LPEPEGHLSVENVTIVPPGG-KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRE 388 (544)
T ss_pred CCCCCCeEEEEEEEEEcCCC-CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHH
Confidence 12234679999999999743 34689999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccEEEEecCCcCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHH
Q 000406 746 WLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARA 825 (1560)
Q Consensus 746 ~lr~~i~~v~Q~~~lf~~Tv~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARA 825 (1560)
.+|+.|+||||+|++|++|++|||.++.++.++++++++++.++++++++++|+|++|.+|++|.+||||||||++||||
T Consensus 389 ~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARa 468 (544)
T TIGR01842 389 TFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARA 468 (544)
T ss_pred HHhhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999998777678899999999999999999999999999999999999999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCccccccCCEEEEEeCCeEEEecChhhHhh
Q 000406 826 MIKDPRILLLDEPTSALDSESESIVQQAIDKIS-VGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLE 898 (1560)
Q Consensus 826 l~~~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~~D~i~vl~~G~iv~~G~~~~l~~ 898 (1560)
++++|+|||||||||+||+++++.+.+.++++. +++|+|+||||++.+..||+|++|++|++++.|+++++++
T Consensus 469 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 469 LYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred HhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 999999999999999999999999999999874 6899999999999988899999999999999999999864
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-71 Score=713.71 Aligned_cols=502 Identities=25% Similarity=0.386 Sum_probs=365.8
Q ss_pred cEEEEEEEEEcCCCC-CccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecC----------
Q 000406 672 KIEFKGVTFAYPSRP-ETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLK---------- 740 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~---------- 740 (1560)
.|+++|++++|+... ..++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|+++.
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~ 91 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccc
Confidence 599999999996322 246999999999999999999999999999999999999999999999997552
Q ss_pred CccHH---HHh-ccEEEEecCC--cCcc-ccHHHHHhcCCC---CCCHHHHHHHHHHhhhHHHHHhCCCCCC---cccCC
Q 000406 741 SLQVK---WLR-TQIGMVGQEP--ILFA-TSILENVLMGKE---NATMKEAVAACKAASAHSFISELPLGYD---TQVGD 807 (1560)
Q Consensus 741 ~~~~~---~lr-~~i~~v~Q~~--~lf~-~Tv~eNi~~g~~---~~~~~~~~~~~~~~~~~~~i~~l~~gl~---t~~~~ 807 (1560)
+.+.. .+| ++||||+|+| .+++ .||.|||.++.. ....++.. ..+.+.++.+ |+. .....
T Consensus 92 ~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gL~~~~~~~~~ 164 (623)
T PRK10261 92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAM-----VEAKRMLDQV--RIPEAQTILSR 164 (623)
T ss_pred cCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHC--CCCChhhHHhC
Confidence 12222 233 4799999998 5776 499999987531 11222211 1122334444 442 34567
Q ss_pred CCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CcEEEEEecCcccccc-CCEEEEEeC
Q 000406 808 RGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKIS-V-GRTTIVIAHRLATVKN-ANTIVVLDQ 884 (1560)
Q Consensus 808 ~g~~LSgGQrQRialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~i~~-~D~i~vl~~ 884 (1560)
...+|||||||||+|||||+.+|+||||||||++||+.+++.+.+.|+++. + |+|||+|||+++.+.. ||||++|++
T Consensus 165 ~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~ 244 (623)
T PRK10261 165 YPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQ 244 (623)
T ss_pred CCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeC
Confidence 788999999999999999999999999999999999999999999999874 3 8999999999999866 999999999
Q ss_pred CeEEEecChhhHhhhcc-hHHHHHHHHHhhccCccccchhcccccchhhhhhhHHHhhhhhhhhhhhhhhhhhhhHHHhh
Q 000406 885 GSVVEIGNHRQLLERGG-AYHDLVKLASEAVSQPQSKQKDAKRGIEFSIYEKSVIEVSRSRYANEVSKSKYFKSMQAEIQ 963 (1560)
Q Consensus 885 G~iv~~G~~~~l~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 963 (1560)
|++++.|++++++.... .|...+
T Consensus 245 G~i~~~g~~~~~~~~~~~~~~~~l-------------------------------------------------------- 268 (623)
T PRK10261 245 GEAVETGSVEQIFHAPQHPYTRAL-------------------------------------------------------- 268 (623)
T ss_pred CeecccCCHHHhhcCCCChhhhhh--------------------------------------------------------
Confidence 99999998877643110 000000
Q ss_pred hhHhhhhCCCCchhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Q 000406 964 TVEEEQQKPRPRKFQLSEIWKLQRPEFAMIIFGFILGMHAGAILSIFPLILGQALQVYFDDTASTLRRDVRYLSLALVGL 1043 (1560)
Q Consensus 964 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 1043 (1560)
... .+ ....
T Consensus 269 -------------------~~~------------------------~~----------------~~~~------------ 277 (623)
T PRK10261 269 -------------------LAA------------------------VP----------------QLGA------------ 277 (623)
T ss_pred -------------------hhc------------------------cC----------------cccc------------
Confidence 000 00 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccCChHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 000406 1044 GFGCIIFMTGQQGFCGWAGTKLTMRVRELLFRSILKQEPGWFDFEENSTGVLVSRLSIDSISFRSVLGDRFSVLLMGLSS 1123 (1560)
Q Consensus 1044 ~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~ll~~~~~ffd~~~~~~G~il~R~s~Di~~i~~~l~~~l~~~l~~~~~ 1123 (1560)
...+ ..+ .-+..
T Consensus 278 -----------------------------~~~~--~~~-~~~~~------------------------------------ 289 (623)
T PRK10261 278 -----------------------------MKGL--DYP-RRFPL------------------------------------ 289 (623)
T ss_pred -----------------------------cccc--cCC-ccccc------------------------------------
Confidence 0000 000 00000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHhcchhHHHhccchHHHHHHHHHH
Q 000406 1124 AAVGLGVSLVLNWRLTLVAAALTPFTLGASYLSLIINVGPKIDNSSYAKASSIASGAVSNIRTVTTFSAQEQIINSFDKA 1203 (1560)
Q Consensus 1124 ~i~~l~~~~~~~~~l~lv~l~~ipl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~e~~~~~~~~~~ 1203 (1560)
T Consensus 290 -------------------------------------------------------------------------------- 289 (623)
T PRK10261 290 -------------------------------------------------------------------------------- 289 (623)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 000406 1204 LSEPKKKSVKRSQILGLTLGFSQGAMYVAYTFTLWFGAYLVKQGHASFGVVYKIFLILVLSSFSVGQLAGLAPDTSMAAT 1283 (1560)
Q Consensus 1204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~ 1283 (1560)
... .. .
T Consensus 290 ~~~-~~-------------------------------------~------------------------------------ 295 (623)
T PRK10261 290 ISL-EH-------------------------------------P------------------------------------ 295 (623)
T ss_pred ccc-cc-------------------------------------c------------------------------------
Confidence 000 00 0
Q ss_pred HHHHHHHHhccCCccccccccccCCCCCccEEEEEEEEEcCCCC--------CccceeeeeEEEeCCcEEEEEcCCCCCH
Q 000406 1284 AIPAVLQITKRKPLIDNVKGRKLERSKPLGIELKMVTFTYPSRP--------EVTVLKDFCLKVKGGSMVALVGGSGSGK 1355 (1560)
Q Consensus 1284 s~~ri~~i~~~~~~~~~~~~~~~~~~~~~~I~~~nVsf~Y~~~~--------~~~vL~~vSf~I~~GE~vaIVG~SGSGK 1355 (1560)
+ ...+..... ... ....-++++||++.|+.+. ...+|+||||+|++||++||+|+|||||
T Consensus 296 ---~----~~~~~~~~~----~~~-~~~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGK 363 (623)
T PRK10261 296 ---A----KQEPPIEQD----TVV-DGEPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGK 363 (623)
T ss_pred ---c----ccCcccccc----ccc-CCCceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCH
Confidence 0 000000000 000 0112499999999996311 2369999999999999999999999999
Q ss_pred HHHHHHHhcccCCCccEEEECCEecCCCCHH---HHhhceEEEcCCCC--CCC-ccHHHHHhcCC--CCC-CH----HHH
Q 000406 1356 STVIWLIQRFYDPNQGKVMIEGVDLREINVK---WLRKQTALVGQEPA--LFA-GTIRDNIALGN--PKA-SW----AEI 1422 (1560)
Q Consensus 1356 STLl~lL~rl~~p~~G~I~IdGvdi~~i~l~---~LR~~I~~VpQdp~--LF~-gTIreNL~~g~--~~~-sd----~eI 1422 (1560)
|||+++|+|+++|++|+|.++|.++...+.. .+|++|+||||+|. ++. .||.+|+.++. ... .. +++
T Consensus 364 STLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~ 443 (623)
T PRK10261 364 STTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARV 443 (623)
T ss_pred HHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 9999999999999999999999999877643 45778999999983 665 59999987531 011 11 234
Q ss_pred HHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--
Q 000406 1423 EEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSK-- 1500 (1560)
Q Consensus 1423 ~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~-- 1500 (1560)
.++++.+++.+ .........||||||||++|||||+.+|+||||||||++||+.+.+.|.+.|+++.+
T Consensus 444 ~~~L~~~gL~~----------~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~ 513 (623)
T PRK10261 444 AWLLERVGLLP----------EHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDF 513 (623)
T ss_pred HHHHHHcCCCH----------HHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc
Confidence 44455444421 112233457999999999999999999999999999999999999999999988643
Q ss_pred CceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHHHhhccChHH-HHHHHH
Q 000406 1501 RATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLASHLNGVY-ASLVRA 1552 (1560)
Q Consensus 1501 ~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eLl~~~~~g~y-~~l~~~ 1552 (1560)
+.|+|+|||+++.+.. ||||+||++|+|++.|++++++.+ ....| ..++..
T Consensus 514 g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~g~~~~i~~~-p~~~~~~~l~~~ 566 (623)
T PRK10261 514 GIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFEN-PQHPYTRKLMAA 566 (623)
T ss_pred CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhcC-CCCHHHHHHHhh
Confidence 6899999999999976 999999999999999999999863 33344 345543
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-71 Score=698.79 Aligned_cols=462 Identities=23% Similarity=0.385 Sum_probs=358.3
Q ss_pred cEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCC--CccEEEECCeecCCccHH-HHh
Q 000406 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDP--TKGLITLDGHDLKSLQVK-WLR 748 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~--~~G~I~i~g~~i~~~~~~-~lr 748 (1560)
.|+++|++++|++ .++|+||||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+.. ..|
T Consensus 5 ~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (506)
T PRK13549 5 LLEMKNITKTFGG---VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTER 81 (506)
T ss_pred eEEEeeeEEEeCC---eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHH
Confidence 4899999999963 4699999999999999999999999999999999999986 899999999999776654 346
Q ss_pred ccEEEEecCCcCccc-cHHHHHhcCCCC-----CCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHH
Q 000406 749 TQIGMVGQEPILFAT-SILENVLMGKEN-----ATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIAL 822 (1560)
Q Consensus 749 ~~i~~v~Q~~~lf~~-Tv~eNi~~g~~~-----~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRial 822 (1560)
+.|+||+|++.++.. |++||+.++... ...++..+ .+.+.++.+ |++........+||||||||++|
T Consensus 82 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGqkqrv~l 154 (506)
T PRK13549 82 AGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYL-----RAQKLLAQL--KLDINPATPVGNLGLGQQQLVEI 154 (506)
T ss_pred CCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHH-----HHHHHHHHc--CCCCCcccchhhCCHHHHHHHHH
Confidence 789999999988875 999999886431 11111111 223445554 55555667778999999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhHhhhc
Q 000406 823 ARAMIKDPRILLLDEPTSALDSESESIVQQAIDKI-SVGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLERG 900 (1560)
Q Consensus 823 ARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l~~~~ 900 (1560)
||||+.+|+||||||||++||+.+...+.+.|.++ .+|+|+|+|||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 155 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~- 233 (506)
T PRK13549 155 AKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMTED- 233 (506)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccCCHH-
Confidence 99999999999999999999999999999999887 358999999999999876 999999999999988765443100
Q ss_pred chHHHHHHHHHhhccCccccchhcccccchhhhhhhHHHhhhhhhhhhhhhhhhhhhhHHHhhhhHhhhhCCCCchhhHH
Q 000406 901 GAYHDLVKLASEAVSQPQSKQKDAKRGIEFSIYEKSVIEVSRSRYANEVSKSKYFKSMQAEIQTVEEEQQKPRPRKFQLS 980 (1560)
Q Consensus 901 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 980 (1560)
+...
T Consensus 234 ----~~~~------------------------------------------------------------------------ 237 (506)
T PRK13549 234 ----DIIT------------------------------------------------------------------------ 237 (506)
T ss_pred ----HHHH------------------------------------------------------------------------
Confidence 0000
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 981 EIWKLQRPEFAMIIFGFILGMHAGAILSIFPLILGQALQVYFDDTASTLRRDVRYLSLALVGLGFGCIIFMTGQQGFCGW 1060 (1560)
Q Consensus 981 ~l~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 1060 (1560)
.+..
T Consensus 238 ---------------------------------------~~~~------------------------------------- 241 (506)
T PRK13549 238 ---------------------------------------MMVG------------------------------------- 241 (506)
T ss_pred ---------------------------------------HhhC-------------------------------------
Confidence 0000
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCcccccCChHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 1061 AGTKLTMRVRELLFRSILKQEPGWFDFEENSTGVLVSRLSIDSISFRSVLGDRFSVLLMGLSSAAVGLGVSLVLNWRLTL 1140 (1560)
Q Consensus 1061 ~~~~~~~~Lr~~l~~~ll~~~~~ffd~~~~~~G~il~R~s~Di~~i~~~l~~~l~~~l~~~~~~i~~l~~~~~~~~~l~l 1140 (1560)
.+.. .
T Consensus 242 -------------------~~~~--~------------------------------------------------------ 246 (506)
T PRK13549 242 -------------------RELT--A------------------------------------------------------ 246 (506)
T ss_pred -------------------cCcc--c------------------------------------------------------
Confidence 0000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHhcchhHHHhccchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 000406 1141 VAAALTPFTLGASYLSLIINVGPKIDNSSYAKASSIASGAVSNIRTVTTFSAQEQIINSFDKALSEPKKKSVKRSQILGL 1220 (1560)
Q Consensus 1141 v~l~~ipl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1220 (1560)
T Consensus 247 -------------------------------------------------------------------------------- 246 (506)
T PRK13549 247 -------------------------------------------------------------------------------- 246 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccCCcccc
Q 000406 1221 TLGFSQGAMYVAYTFTLWFGAYLVKQGHASFGVVYKIFLILVLSSFSVGQLAGLAPDTSMAATAIPAVLQITKRKPLIDN 1300 (1560)
Q Consensus 1221 ~~~~~~~~~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~s~~ri~~i~~~~~~~~~ 1300 (1560)
..+....
T Consensus 247 -------------------------------------------------------------------------~~~~~~~ 253 (506)
T PRK13549 247 -------------------------------------------------------------------------LYPREPH 253 (506)
T ss_pred -------------------------------------------------------------------------ccccccc
Confidence 0000000
Q ss_pred ccccccCCCCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccC-CCccEEEECCEe
Q 000406 1301 VKGRKLERSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYD-PNQGKVMIEGVD 1379 (1560)
Q Consensus 1301 ~~~~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~-p~~G~I~IdGvd 1379 (1560)
. ....-|+++||++.|+.+...++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.+
T Consensus 254 ----~---~~~~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~ 326 (506)
T PRK13549 254 ----T---IGEVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKP 326 (506)
T ss_pred ----C---CCCceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEE
Confidence 0 00124899999999953213459999999999999999999999999999999999998 599999999999
Q ss_pred cCCCCH-HHHhhceEEEcCCC---CCCC-ccHHHHHhcCCC-C------CCHHHHHHHHHHHhHHHHHHhCCCCccc-cc
Q 000406 1380 LREINV-KWLRKQTALVGQEP---ALFA-GTIRDNIALGNP-K------ASWAEIEEAAEEAYIHKFISSLPQGYET-QV 1446 (1560)
Q Consensus 1380 i~~i~l-~~LR~~I~~VpQdp---~LF~-gTIreNL~~g~~-~------~sd~eI~~al~~a~l~~~I~~Lp~Gldt-~V 1446 (1560)
+...+. +.+|+.++||||++ .+|. .|+.||+.++.. . .+.++. ...+.+.+..+ |++. ..
T Consensus 327 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~ 399 (506)
T PRK13549 327 VKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAE-----LKTILESIQRL--KVKTASP 399 (506)
T ss_pred CCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHH-----HHHHHHHHHhc--CccCCCc
Confidence 876543 45677899999996 3554 699999986421 0 011111 12233444443 2321 23
Q ss_pred cCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCceEEEEecChHHHhh-cCEEEEEe
Q 000406 1447 GESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVS-KRATTIVVAHRLSTIRE-ANMIAVVR 1524 (1560)
Q Consensus 1447 ge~G~~LSGGQrQRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~-~~~TvI~IAHRlsti~~-aDrIlVLd 1524 (1560)
......||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|+++. +++|||+|||+++.+.. ||+|++|+
T Consensus 400 ~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~ 479 (506)
T PRK13549 400 ELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMH 479 (506)
T ss_pred ccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEE
Confidence 34445799999999999999999999999999999999999999999998764 47899999999999876 99999999
Q ss_pred CCEEEEecCHHHHH
Q 000406 1525 DGAVVEYGSHETLL 1538 (1560)
Q Consensus 1525 ~G~IvE~Gt~~eLl 1538 (1560)
+|+|+..|+++++.
T Consensus 480 ~G~i~~~~~~~~~~ 493 (506)
T PRK13549 480 EGKLKGDLINHNLT 493 (506)
T ss_pred CCEEEEEeccccCC
Confidence 99999999888763
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-70 Score=695.83 Aligned_cols=465 Identities=27% Similarity=0.443 Sum_probs=355.8
Q ss_pred cEEEEEEEEEcCCC-CCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCC-----CccEEEECCeecCCccHH
Q 000406 672 KIEFKGVTFAYPSR-PETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDP-----TKGLITLDGHDLKSLQVK 745 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~-~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~-----~~G~I~i~g~~i~~~~~~ 745 (1560)
.|+++|++++|+.. ...++|+||||+|++||++||+||||||||||+++|+|+++| ++|+|.++|+++...+..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 48999999999632 124699999999999999999999999999999999999986 799999999999776543
Q ss_pred ---HHh-ccEEEEecCCc--Ccc-ccHHHHHhcCCC---CCCHHHHHHHHHHhhhHHHHHhCCCCCCc---ccCCCCCCC
Q 000406 746 ---WLR-TQIGMVGQEPI--LFA-TSILENVLMGKE---NATMKEAVAACKAASAHSFISELPLGYDT---QVGDRGTQL 812 (1560)
Q Consensus 746 ---~lr-~~i~~v~Q~~~--lf~-~Tv~eNi~~g~~---~~~~~~~~~~~~~~~~~~~i~~l~~gl~t---~~~~~g~~L 812 (1560)
.+| ++|+||+|++. +++ .|+++|+.++.. .....+.. ..+.+.++.+ |++. .......+|
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~~~~L 157 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAAR-----GEILNCLDRV--GIRQAAKRLTDYPHQL 157 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHC--CCCChHHHHhhCCccc
Confidence 233 57999999985 444 499999864310 11221111 1122334444 4432 245677899
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCcccccc-CCEEEEEeCCeEEE
Q 000406 813 SGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKIS--VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVE 889 (1560)
Q Consensus 813 SgGQrQRialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~ 889 (1560)
|||||||++|||||+.+|++|||||||++||+.+...+.+.|+++. .|+|||+|||+++.+.. ||||++|++|++++
T Consensus 158 SgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~ 237 (529)
T PRK15134 158 SGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVE 237 (529)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999873 38999999999999875 99999999999999
Q ss_pred ecChhhHhhhcchHHHHHHHHHhhccCccccchhcccccchhhhhhhHHHhhhhhhhhhhhhhhhhhhhHHHhhhhHhhh
Q 000406 890 IGNHRQLLERGGAYHDLVKLASEAVSQPQSKQKDAKRGIEFSIYEKSVIEVSRSRYANEVSKSKYFKSMQAEIQTVEEEQ 969 (1560)
Q Consensus 890 ~G~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 969 (1560)
.|++++++.... . ..
T Consensus 238 ~g~~~~~~~~~~-------------------------~-------------------------~~--------------- 252 (529)
T PRK15134 238 QNRAATLFSAPT-------------------------H-------------------------PY--------------- 252 (529)
T ss_pred eCCHHHHhhCCC-------------------------C-------------------------HH---------------
Confidence 888765532100 0 00
Q ss_pred hCCCCchhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHHH
Q 000406 970 QKPRPRKFQLSEIWKLQRPEFAMIIFGFILGMHAGAILSIFPLILGQALQVYFDDTASTLRRDVRYLSLALVGLGFGCII 1049 (1560)
Q Consensus 970 ~~~~~~~~~~~~l~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 1049 (1560)
...
T Consensus 253 ---------~~~-------------------------------------------------------------------- 255 (529)
T PRK15134 253 ---------TQK-------------------------------------------------------------------- 255 (529)
T ss_pred ---------HHH--------------------------------------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccCChHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 1050 FMTGQQGFCGWAGTKLTMRVRELLFRSILKQEPGWFDFEENSTGVLVSRLSIDSISFRSVLGDRFSVLLMGLSSAAVGLG 1129 (1560)
Q Consensus 1050 ~~~~~~~~~~~~~~~~~~~Lr~~l~~~ll~~~~~ffd~~~~~~G~il~R~s~Di~~i~~~l~~~l~~~l~~~~~~i~~l~ 1129 (1560)
++. .++.
T Consensus 256 -----------------------~~~----~~~~---------------------------------------------- 262 (529)
T PRK15134 256 -----------------------LLN----SEPS---------------------------------------------- 262 (529)
T ss_pred -----------------------HHH----hCcc----------------------------------------------
Confidence 000 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHhcchhHHHhccchHHHHHHHHHHHhhhHH
Q 000406 1130 VSLVLNWRLTLVAAALTPFTLGASYLSLIINVGPKIDNSSYAKASSIASGAVSNIRTVTTFSAQEQIINSFDKALSEPKK 1209 (1560)
Q Consensus 1130 ~~~~~~~~l~lv~l~~ipl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~e~~~~~~~~~~~~~~~~ 1209 (1560)
T Consensus 263 -------------------------------------------------------------------------------- 262 (529)
T PRK15134 263 -------------------------------------------------------------------------------- 262 (529)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 000406 1210 KSVKRSQILGLTLGFSQGAMYVAYTFTLWFGAYLVKQGHASFGVVYKIFLILVLSSFSVGQLAGLAPDTSMAATAIPAVL 1289 (1560)
Q Consensus 1210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~s~~ri~ 1289 (1560)
T Consensus 263 -------------------------------------------------------------------------------- 262 (529)
T PRK15134 263 -------------------------------------------------------------------------------- 262 (529)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhccCCccccccccccCCCCCccEEEEEEEEEcCCC--------CCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHH
Q 000406 1290 QITKRKPLIDNVKGRKLERSKPLGIELKMVTFTYPSR--------PEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWL 1361 (1560)
Q Consensus 1290 ~i~~~~~~~~~~~~~~~~~~~~~~I~~~nVsf~Y~~~--------~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~l 1361 (1560)
..+.... . ....-|+++||++.|+.. .+..+|+||||+|++||++||+|+||||||||+++
T Consensus 263 ----~~~~~~~----~---~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~ 331 (529)
T PRK15134 263 ----GDPVPLP----E---PASPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLA 331 (529)
T ss_pred ----ccccccC----C---CCCCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHH
Confidence 0000000 0 001148999999999521 12469999999999999999999999999999999
Q ss_pred HhcccCCCccEEEECCEecCCCCHHH---HhhceEEEcCCC--CCCC-ccHHHHHhcCCC----CCCH----HHHHHHHH
Q 000406 1362 IQRFYDPNQGKVMIEGVDLREINVKW---LRKQTALVGQEP--ALFA-GTIRDNIALGNP----KASW----AEIEEAAE 1427 (1560)
Q Consensus 1362 L~rl~~p~~G~I~IdGvdi~~i~l~~---LR~~I~~VpQdp--~LF~-gTIreNL~~g~~----~~sd----~eI~~al~ 1427 (1560)
|+|+++ ++|+|.++|.++..++... +|++++||||++ .+|. .|++||+.++.. .... +++.++++
T Consensus 332 l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~ 410 (529)
T PRK15134 332 LLRLIN-SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVME 410 (529)
T ss_pred HhCcCC-CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHH
Confidence 999994 8999999999998776543 477899999998 3665 599999986411 0111 22333344
Q ss_pred HHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CceEE
Q 000406 1428 EAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSK--RATTI 1505 (1560)
Q Consensus 1428 ~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~--~~TvI 1505 (1560)
..++.+ ........+||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|++..+ ++|||
T Consensus 411 ~~~l~~----------~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi 480 (529)
T PRK15134 411 EVGLDP----------ETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYL 480 (529)
T ss_pred HcCCCH----------HHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEE
Confidence 333321 122334457999999999999999999999999999999999999999999998753 68999
Q ss_pred EEecChHHHhh-cCEEEEEeCCEEEEecCHHHHHhh
Q 000406 1506 VVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLAS 1540 (1560)
Q Consensus 1506 ~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eLl~~ 1540 (1560)
+|||+++.+.. ||+|++|++|+|++.|++++++++
T Consensus 481 ~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 516 (529)
T PRK15134 481 FISHDLHVVRALCHQVIVLRQGEVVEQGDCERVFAA 516 (529)
T ss_pred EEeCCHHHHHHhcCeEEEEECCEEEEEcCHHHHhcC
Confidence 99999999876 999999999999999999999863
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-70 Score=688.52 Aligned_cols=457 Identities=22% Similarity=0.378 Sum_probs=353.0
Q ss_pred cEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHH-Hhcc
Q 000406 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKW-LRTQ 750 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~-lr~~ 750 (1560)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .+++
T Consensus 5 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 81 (510)
T PRK09700 5 YISMAGIGKSFGP---VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLG 81 (510)
T ss_pred eEEEeeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCC
Confidence 4899999999963 45899999999999999999999999999999999999999999999999998776544 3467
Q ss_pred EEEEecCCcCccc-cHHHHHhcCCCCC---------CHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHH
Q 000406 751 IGMVGQEPILFAT-SILENVLMGKENA---------TMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRI 820 (1560)
Q Consensus 751 i~~v~Q~~~lf~~-Tv~eNi~~g~~~~---------~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRi 820 (1560)
|+||+|++.++.. |++||+.++.... ..++.. ..+.+.++.+ |+....+....+||||||||+
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LSgG~~qrv 154 (510)
T PRK09700 82 IGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMR-----VRAAMMLLRV--GLKVDLDEKVANLSISHKQML 154 (510)
T ss_pred eEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHH-----HHHHHHHHHc--CCCCCcccchhhCCHHHHHHH
Confidence 9999999988875 9999998754210 111111 1223344444 555556677789999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhHhh
Q 000406 821 ALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKIS-VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLE 898 (1560)
Q Consensus 821 alARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l~~ 898 (1560)
+|||||+.+|+||||||||++||+.+...+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 155 ~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (510)
T PRK09700 155 EIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSN 234 (510)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhCCH
Confidence 99999999999999999999999999999999998874 48999999999999876 99999999999998887655421
Q ss_pred hcchHHHHHHHHHhhccCccccchhcccccchhhhhhhHHHhhhhhhhhhhhhhhhhhhhHHHhhhhHhhhhCCCCchhh
Q 000406 899 RGGAYHDLVKLASEAVSQPQSKQKDAKRGIEFSIYEKSVIEVSRSRYANEVSKSKYFKSMQAEIQTVEEEQQKPRPRKFQ 978 (1560)
Q Consensus 899 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 978 (1560)
. +....
T Consensus 235 ~-----~~~~~--------------------------------------------------------------------- 240 (510)
T PRK09700 235 D-----DIVRL--------------------------------------------------------------------- 240 (510)
T ss_pred H-----HHHHH---------------------------------------------------------------------
Confidence 0 00000
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 979 LSEIWKLQRPEFAMIIFGFILGMHAGAILSIFPLILGQALQVYFDDTASTLRRDVRYLSLALVGLGFGCIIFMTGQQGFC 1058 (1560)
Q Consensus 979 ~~~l~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 1058 (1560)
.
T Consensus 241 ------------------------------------------~------------------------------------- 241 (510)
T PRK09700 241 ------------------------------------------M------------------------------------- 241 (510)
T ss_pred ------------------------------------------h-------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCcccccCChHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 1059 GWAGTKLTMRVRELLFRSILKQEPGWFDFEENSTGVLVSRLSIDSISFRSVLGDRFSVLLMGLSSAAVGLGVSLVLNWRL 1138 (1560)
Q Consensus 1059 ~~~~~~~~~~Lr~~l~~~ll~~~~~ffd~~~~~~G~il~R~s~Di~~i~~~l~~~l~~~l~~~~~~i~~l~~~~~~~~~l 1138 (1560)
+.. .. ..++
T Consensus 242 --------------------------~~~---~~---~~~~--------------------------------------- 250 (510)
T PRK09700 242 --------------------------VGR---EL---QNRF--------------------------------------- 250 (510)
T ss_pred --------------------------cCC---Cc---cccc---------------------------------------
Confidence 000 00 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHhcchhHHHhccchHHHHHHHHHHHhhhHHHHHHHHHHH
Q 000406 1139 TLVAAALTPFTLGASYLSLIINVGPKIDNSSYAKASSIASGAVSNIRTVTTFSAQEQIINSFDKALSEPKKKSVKRSQIL 1218 (1560)
Q Consensus 1139 ~lv~l~~ipl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 1218 (1560)
T Consensus 251 -------------------------------------------------------------------------------- 250 (510)
T PRK09700 251 -------------------------------------------------------------------------------- 250 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccCCcc
Q 000406 1219 GLTLGFSQGAMYVAYTFTLWFGAYLVKQGHASFGVVYKIFLILVLSSFSVGQLAGLAPDTSMAATAIPAVLQITKRKPLI 1298 (1560)
Q Consensus 1219 ~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~s~~ri~~i~~~~~~~ 1298 (1560)
....+..
T Consensus 251 -------------------------------------------------------------------------~~~~~~~ 257 (510)
T PRK09700 251 -------------------------------------------------------------------------NAMKENV 257 (510)
T ss_pred -------------------------------------------------------------------------ccccccc
Confidence 0000000
Q ss_pred ccccccccCCCCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCE
Q 000406 1299 DNVKGRKLERSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGV 1378 (1560)
Q Consensus 1299 ~~~~~~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGv 1378 (1560)
.. . ..+.-|+++|+++.|. .+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.
T Consensus 258 ~~----~---~~~~~l~~~~l~~~~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~ 325 (510)
T PRK09700 258 SN----L---AHETVFEVRNVTSRDR-----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGK 325 (510)
T ss_pred cc----C---CCCcEEEEeCccccCC-----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCE
Confidence 00 0 0112499999998762 2899999999999999999999999999999999999999999999999
Q ss_pred ecCCCCH-HHHhhceEEEcCCC---CCCC-ccHHHHHhcCCCC-----------CCHHHHHHHHHHHhHHHHHHhCCCCc
Q 000406 1379 DLREINV-KWLRKQTALVGQEP---ALFA-GTIRDNIALGNPK-----------ASWAEIEEAAEEAYIHKFISSLPQGY 1442 (1560)
Q Consensus 1379 di~~i~l-~~LR~~I~~VpQdp---~LF~-gTIreNL~~g~~~-----------~sd~eI~~al~~a~l~~~I~~Lp~Gl 1442 (1560)
++...+. ..+|+.++||||++ .+|. -|++||+.++... ....+. ...+.+.+..+ |+
T Consensus 326 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l 398 (510)
T PRK09700 326 DISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDE-----QRTAENQRELL--AL 398 (510)
T ss_pred ECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHH-----HHHHHHHHHhc--CC
Confidence 9876554 45678899999984 4665 5999999875210 011110 11223333333 23
Q ss_pred c-ccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCceEEEEecChHHHhh-cCE
Q 000406 1443 E-TQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVS-KRATTIVVAHRLSTIRE-ANM 1519 (1560)
Q Consensus 1443 d-t~Vge~G~~LSGGQrQRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~-~~~TvI~IAHRlsti~~-aDr 1519 (1560)
. .........||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|+++. +++|||+|||+++.+.. ||+
T Consensus 399 ~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~ 478 (510)
T PRK09700 399 KCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDR 478 (510)
T ss_pred CCCCccCccccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCE
Confidence 2 12233344799999999999999999999999999999999999999999999863 47899999999998865 999
Q ss_pred EEEEeCCEEEEecCH
Q 000406 1520 IAVVRDGAVVEYGSH 1534 (1560)
Q Consensus 1520 IlVLd~G~IvE~Gt~ 1534 (1560)
|++|++|++++.++.
T Consensus 479 i~~l~~G~i~~~~~~ 493 (510)
T PRK09700 479 IAVFCEGRLTQILTN 493 (510)
T ss_pred EEEEECCEEEEEecC
Confidence 999999999998866
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-68 Score=621.10 Aligned_cols=536 Identities=23% Similarity=0.277 Sum_probs=465.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 992 MIIFGFILGMHAGAILSIFPLILGQALQVYFDDTASTLRRDVRYLSLALVGLGFGCIIFMTGQQGFCGWAGTKLTMRVRE 1071 (1560)
Q Consensus 992 ~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Lr~ 1071 (1560)
.++...+++.+..++....|+++-++.+-... +......-.+.++.+++.++..++..++..+..+.+.++...+..
T Consensus 24 a~~~v~lfS~~INiL~L~~~lyMLQVyDRVL~---S~s~~TLv~Ltvlal~ly~~~glLd~iR~~~l~Rig~~lD~~L~~ 100 (580)
T COG4618 24 AFIGVGLFSAVINLLALTGPLYMLQVYDRVLP---SRSVPTLVMLTVLALGLYAFQGLLDAIRSRVLVRIGERLDRQLNG 100 (580)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcc---CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34444455555566666777777666555442 233344455666667777788888899999999999999999999
Q ss_pred HHHHHHHcCCCCCcccccCChHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 1072 LLFRSILKQEPGWFDFEENSTGVLVSRLSIDSISFRSVLGDRFSVLLMGLSSAAVGLGVSLVLNWRLTLVAAALTPFTLG 1151 (1560)
Q Consensus 1072 ~l~~~ll~~~~~ffd~~~~~~G~il~R~s~Di~~i~~~l~~~l~~~l~~~~~~i~~l~~~~~~~~~l~lv~l~~ipl~~~ 1151 (1560)
.+|...++++.. .+..|+=..- -+|.++++.+++..-+..+.+.....+.++++|.+++++.++.++...+++.
T Consensus 101 ~v~~a~~~~~l~-----~~~~g~~~Q~-LrDL~qvR~Fltg~g~~A~fDaPW~P~yl~v~fl~Hp~lG~~a~~ga~iLv~ 174 (580)
T COG4618 101 PVFAASFSAPLL-----RRGSGDGLQP-LRDLDQVRQFLTGTGLTAFFDAPWMPLYLAVIFLFHPWLGLIALAGAIILVV 174 (580)
T ss_pred HHHHHHHhhHHh-----hcCCCccccc-hhhHHHHHHHHcCCCcchhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998765543 2333432222 3699999999999999999999999999999999999999998888777776
Q ss_pred HHHHHHHHhcchhhh-hhhHHHHHHHHHHHhcchhHHHhccchHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 1152 ASYLSLIINVGPKID-NSSYAKASSIASGAVSNIRTVTTFSAQEQIINSFDKALSEPKKKSVKRSQILGLTLGFSQGAMY 1230 (1560)
Q Consensus 1152 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1230 (1560)
..++.....+..-.+ .+...+.+.+...+.++.++|++.|+.....++|.+....+.....+..-..+.+..++..+-.
T Consensus 175 la~ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm 254 (580)
T COG4618 175 LALLNERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFGALSRALRM 254 (580)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 666655544433333 5556667788888999999999999999999999999999998888888888899999999999
Q ss_pred HHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccCCccccccccccCCCC
Q 000406 1231 VAYTFTLWFGAYLVKQGHASFGVVYKIFLILVLSSFSVGQLAGLAPDTSMAATAIPAVLQITKRKPLIDNVKGRKLERSK 1310 (1560)
Q Consensus 1231 ~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~s~~ri~~i~~~~~~~~~~~~~~~~~~~ 1310 (1560)
+....++.+|++++..|++|.|.+++...++.....|+...+..|..+..+..+..|+.++++..|...+.- ..+.|
T Consensus 255 ~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~~m--~LP~P- 331 (580)
T COG4618 255 ALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAERM--PLPAP- 331 (580)
T ss_pred HHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCC--CCCCC-
Confidence 999999999999999999999999999999999999999999999999999999999999998776644321 12222
Q ss_pred CccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhh
Q 000406 1311 PLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRK 1390 (1560)
Q Consensus 1311 ~~~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~ 1390 (1560)
.+.+.+|+|++.=|+. ++++|++|||+++|||-+|||||||||||||.++|.|.++|.+|.|.+||-|++.++.+++-+
T Consensus 332 ~g~L~Ve~l~~~PPg~-~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~ 410 (580)
T COG4618 332 QGALSVERLTAAPPGQ-KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGR 410 (580)
T ss_pred CceeeEeeeeecCCCC-CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhcc
Confidence 5679999999976654 568999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEcCCCCCCCccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHccC
Q 000406 1391 QTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKG 1470 (1560)
Q Consensus 1391 ~I~~VpQdp~LF~gTIreNL~~g~~~~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLARALLr~ 1470 (1560)
+|||.|||..||+|||+|||+-+.++.+++.|.+|++.++.||.|.+||+||||.||++|..|||||||||+|||||+.+
T Consensus 411 hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~ 490 (580)
T COG4618 411 HIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGD 490 (580)
T ss_pred ccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCC
Confidence 99999999999999999999988889999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHh-cCCceEEEEecChHHHhhcCEEEEEeCCEEEEecCHHHHHhh
Q 000406 1471 SRVLLLDEASSALDLESEKHVQDALRKV-SKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETLLAS 1540 (1560)
Q Consensus 1471 p~ILILDEaTSaLD~~Te~~I~~~L~~~-~~~~TvI~IAHRlsti~~aDrIlVLd~G~IvE~Gt~~eLl~~ 1540 (1560)
|.+++||||-||||.+-|+.+.++|.+. .+|+|+|+||||++.+..+|+|+||++|++..+|+-+|.+++
T Consensus 491 P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 491 PFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred CcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHHHH
Confidence 9999999999999999999999999875 468999999999999999999999999999999999999973
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-66 Score=707.48 Aligned_cols=220 Identities=24% Similarity=0.429 Sum_probs=189.2
Q ss_pred ccEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHHHhcc
Q 000406 671 GKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQ 750 (1560)
Q Consensus 671 g~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~ 750 (1560)
..|+++|+++.|++. ++.+|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. +...+|+.
T Consensus 927 ~~L~I~nLsK~y~~~-~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~ 1004 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPS-GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQS 1004 (2272)
T ss_pred ceEEEEeEEEEecCC-CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhc
Confidence 369999999999632 3569999999999999999999999999999999999999999999999999865 45567889
Q ss_pred EEEEecCCcCccc-cHHHHHhcCCCC--CCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHHhc
Q 000406 751 IGMVGQEPILFAT-SILENVLMGKEN--ATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMI 827 (1560)
Q Consensus 751 i~~v~Q~~~lf~~-Tv~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARAl~ 827 (1560)
||||||++.+|+. ||+|||.++... ...++..+ .+.+.++.+ |++...+....+||||||||++|||||+
T Consensus 1005 IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~-----~v~~lL~~v--gL~~~~~~~~~~LSGGqKQRLsLArALi 1077 (2272)
T TIGR01257 1005 LGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQL-----EMEAMLEDT--GLHHKRNEEAQDLSGGMQRKLSVAIAFV 1077 (2272)
T ss_pred EEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHH
Confidence 9999999999975 999999875321 11222111 223345554 5666677788899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhHhhh
Q 000406 828 KDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLER 899 (1560)
Q Consensus 828 ~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l~~~ 899 (1560)
.+|+|||||||||+||+.+++.+++.|+++.+|+|||++||+++.+.. ||||++|++|++++.|++++|.++
T Consensus 1078 ~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~ 1150 (2272)
T TIGR01257 1078 GDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNC 1150 (2272)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHh
Confidence 999999999999999999999999999998779999999999999976 999999999999999999998764
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-69 Score=682.68 Aligned_cols=454 Identities=21% Similarity=0.388 Sum_probs=352.8
Q ss_pred cEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHH-Hhcc
Q 000406 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKW-LRTQ 750 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~-lr~~ 750 (1560)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .+++
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (501)
T PRK10762 4 LLQLKGIDKAFPG---VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAG 80 (501)
T ss_pred eEEEeeeEEEeCC---eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 4899999999963 45899999999999999999999999999999999999999999999999987655433 4568
Q ss_pred EEEEecCCcCccc-cHHHHHhcCCCCC------CHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHH
Q 000406 751 IGMVGQEPILFAT-SILENVLMGKENA------TMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALA 823 (1560)
Q Consensus 751 i~~v~Q~~~lf~~-Tv~eNi~~g~~~~------~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialA 823 (1560)
|+||+|++.++.. |++||+.++.... ..++.. ..+.+.++.+ |+.........+||||||||++||
T Consensus 81 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la 153 (501)
T PRK10762 81 IGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMY-----AEADKLLARL--NLRFSSDKLVGELSIGEQQMVEIA 153 (501)
T ss_pred EEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHH-----HHHHHHHHHc--CCCCCccCchhhCCHHHHHHHHHH
Confidence 9999999988875 9999998864211 111111 1123345554 555555667789999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhHhhhcc
Q 000406 824 RAMIKDPRILLLDEPTSALDSESESIVQQAIDKIS-VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLERGG 901 (1560)
Q Consensus 824 RAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l~~~~~ 901 (1560)
|||+.+|++|||||||++||+.+...+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 154 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~-- 231 (501)
T PRK10762 154 KVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLTED-- 231 (501)
T ss_pred HHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCCHH--
Confidence 99999999999999999999999999999998873 47899999999999876 999999999999987765432100
Q ss_pred hHHHHHHHHHhhccCccccchhcccccchhhhhhhHHHhhhhhhhhhhhhhhhhhhhHHHhhhhHhhhhCCCCchhhHHH
Q 000406 902 AYHDLVKLASEAVSQPQSKQKDAKRGIEFSIYEKSVIEVSRSRYANEVSKSKYFKSMQAEIQTVEEEQQKPRPRKFQLSE 981 (1560)
Q Consensus 902 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 981 (1560)
.+..
T Consensus 232 ---~~~~------------------------------------------------------------------------- 235 (501)
T PRK10762 232 ---SLIE------------------------------------------------------------------------- 235 (501)
T ss_pred ---HHHH-------------------------------------------------------------------------
Confidence 0000
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 982 IWKLQRPEFAMIIFGFILGMHAGAILSIFPLILGQALQVYFDDTASTLRRDVRYLSLALVGLGFGCIIFMTGQQGFCGWA 1061 (1560)
Q Consensus 982 l~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 1061 (1560)
..
T Consensus 236 --------------------------------------~~---------------------------------------- 237 (501)
T PRK10762 236 --------------------------------------MM---------------------------------------- 237 (501)
T ss_pred --------------------------------------Hh----------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCcccccCChHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 1062 GTKLTMRVRELLFRSILKQEPGWFDFEENSTGVLVSRLSIDSISFRSVLGDRFSVLLMGLSSAAVGLGVSLVLNWRLTLV 1141 (1560)
Q Consensus 1062 ~~~~~~~Lr~~l~~~ll~~~~~ffd~~~~~~G~il~R~s~Di~~i~~~l~~~l~~~l~~~~~~i~~l~~~~~~~~~l~lv 1141 (1560)
+.. . +
T Consensus 238 -----------------------~~~---~-------~------------------------------------------ 242 (501)
T PRK10762 238 -----------------------VGR---K-------L------------------------------------------ 242 (501)
T ss_pred -----------------------cCC---C-------c------------------------------------------
Confidence 000 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHhcchhHHHhccchHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 000406 1142 AAALTPFTLGASYLSLIINVGPKIDNSSYAKASSIASGAVSNIRTVTTFSAQEQIINSFDKALSEPKKKSVKRSQILGLT 1221 (1560)
Q Consensus 1142 ~l~~ipl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1221 (1560)
.
T Consensus 243 ---------------------------------------------------------------~---------------- 243 (501)
T PRK10762 243 ---------------------------------------------------------------E---------------- 243 (501)
T ss_pred ---------------------------------------------------------------c----------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccCCccccc
Q 000406 1222 LGFSQGAMYVAYTFTLWFGAYLVKQGHASFGVVYKIFLILVLSSFSVGQLAGLAPDTSMAATAIPAVLQITKRKPLIDNV 1301 (1560)
Q Consensus 1222 ~~~~~~~~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~s~~ri~~i~~~~~~~~~~ 1301 (1560)
...+....
T Consensus 244 -----------------------------------------------------------------------~~~~~~~~- 251 (501)
T PRK10762 244 -----------------------------------------------------------------------DQYPRLDK- 251 (501)
T ss_pred -----------------------------------------------------------------------cccccccc-
Confidence 00000000
Q ss_pred cccccCCCCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecC
Q 000406 1302 KGRKLERSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLR 1381 (1560)
Q Consensus 1302 ~~~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~ 1381 (1560)
.+.+.-|+++||++ .+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 252 ------~~~~~~l~~~~l~~--------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~ 317 (501)
T PRK10762 252 ------APGEVRLKVDNLSG--------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVV 317 (501)
T ss_pred ------CCCCcEEEEeCccc--------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECC
Confidence 00012488999974 2799999999999999999999999999999999999999999999999998
Q ss_pred CCCH-HHHhhceEEEcCCC---CCC-CccHHHHHhcCCCC--------CCHHHHHHHHHHHhHHHHHHhCCCCcc-cccc
Q 000406 1382 EINV-KWLRKQTALVGQEP---ALF-AGTIRDNIALGNPK--------ASWAEIEEAAEEAYIHKFISSLPQGYE-TQVG 1447 (1560)
Q Consensus 1382 ~i~l-~~LR~~I~~VpQdp---~LF-~gTIreNL~~g~~~--------~sd~eI~~al~~a~l~~~I~~Lp~Gld-t~Vg 1447 (1560)
..+. +.+|++++||||++ .+| ..|++||+.++... .+.++. ...+.+++..+ |+. ....
T Consensus 318 ~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~ 390 (501)
T PRK10762 318 TRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADE-----QQAVSDFIRLF--NIKTPSME 390 (501)
T ss_pred CCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHH-----HHHHHHHHHhc--CCCCCCcc
Confidence 7765 34678899999997 344 46999999864210 111111 11233344433 331 2234
Q ss_pred CCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCceEEEEecChHHHhh-cCEEEEEeC
Q 000406 1448 ESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVS-KRATTIVVAHRLSTIRE-ANMIAVVRD 1525 (1560)
Q Consensus 1448 e~G~~LSGGQrQRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~-~~~TvI~IAHRlsti~~-aDrIlVLd~ 1525 (1560)
.....||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++
T Consensus 391 ~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~ 470 (501)
T PRK10762 391 QAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHE 470 (501)
T ss_pred CchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEEC
Confidence 4455799999999999999999999999999999999999999999999874 47899999999999876 999999999
Q ss_pred CEEEEecCHHHHH
Q 000406 1526 GAVVEYGSHETLL 1538 (1560)
Q Consensus 1526 G~IvE~Gt~~eLl 1538 (1560)
|+|++.|+++++.
T Consensus 471 G~i~~~~~~~~~~ 483 (501)
T PRK10762 471 GRISGEFTREQAT 483 (501)
T ss_pred CEEEEEeccccCC
Confidence 9999999887753
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-69 Score=686.42 Aligned_cols=457 Identities=26% Similarity=0.438 Sum_probs=348.2
Q ss_pred EEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCC--CCCccEEEEC---------------
Q 000406 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFY--DPTKGLITLD--------------- 735 (1560)
Q Consensus 673 i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~--~~~~G~I~i~--------------- 735 (1560)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+. +|++|+|.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~ 77 (520)
T TIGR03269 1 IEVKNLTKKFDG---KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSK 77 (520)
T ss_pred CEEEEEEEEECC---eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccc
Confidence 578999999963 45899999999999999999999999999999999996 7999999997
Q ss_pred --------CeecC-------Ccc---HHHHhccEEEEecC-CcCccc-cHHHHHhcCCCC--CCHHHHHHHHHHhhhHHH
Q 000406 736 --------GHDLK-------SLQ---VKWLRTQIGMVGQE-PILFAT-SILENVLMGKEN--ATMKEAVAACKAASAHSF 793 (1560)
Q Consensus 736 --------g~~i~-------~~~---~~~lr~~i~~v~Q~-~~lf~~-Tv~eNi~~g~~~--~~~~~~~~~~~~~~~~~~ 793 (1560)
|.++. ..+ ...+|+.++||+|+ +.+|+. |++||+.++... ...++.. ..+.+.
T Consensus 78 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~ 152 (520)
T TIGR03269 78 VGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAV-----GRAVDL 152 (520)
T ss_pred cccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHH-----HHHHHH
Confidence 33221 111 12456789999998 577764 999999875321 1122211 122334
Q ss_pred HHhCCCCCCcccCCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCcc
Q 000406 794 ISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKIS--VGRTTIVIAHRLA 871 (1560)
Q Consensus 794 i~~l~~gl~t~~~~~g~~LSgGQrQRialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~ 871 (1560)
++.+ |++........+|||||||||+|||||+.+|+||||||||++||+.+.+.+.+.|+++. .|+|||+|||+++
T Consensus 153 l~~~--gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~ 230 (520)
T TIGR03269 153 IEMV--QLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPE 230 (520)
T ss_pred HHHc--CChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH
Confidence 4444 55555667778999999999999999999999999999999999999999999999873 3899999999999
Q ss_pred cccc-CCEEEEEeCCeEEEecChhhHhhhcchHHHHHHHHHhhccCccccchhcccccchhhhhhhHHHhhhhhhhhhhh
Q 000406 872 TVKN-ANTIVVLDQGSVVEIGNHRQLLERGGAYHDLVKLASEAVSQPQSKQKDAKRGIEFSIYEKSVIEVSRSRYANEVS 950 (1560)
Q Consensus 872 ~i~~-~D~i~vl~~G~iv~~G~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 950 (1560)
.+.. ||+|++|++|+++..|+++++... ..
T Consensus 231 ~~~~~~d~i~~l~~G~i~~~g~~~~~~~~------~~------------------------------------------- 261 (520)
T TIGR03269 231 VIEDLSDKAIWLENGEIKEEGTPDEVVAV------FM------------------------------------------- 261 (520)
T ss_pred HHHHhcCEEEEEeCCEEeeecCHHHHHHH------HH-------------------------------------------
Confidence 9875 999999999999877655432110 00
Q ss_pred hhhhhhhhHHHhhhhHhhhhCCCCchhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhh
Q 000406 951 KSKYFKSMQAEIQTVEEEQQKPRPRKFQLSEIWKLQRPEFAMIIFGFILGMHAGAILSIFPLILGQALQVYFDDTASTLR 1030 (1560)
Q Consensus 951 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 1030 (1560)
T Consensus 262 -------------------------------------------------------------------------------- 261 (520)
T TIGR03269 262 -------------------------------------------------------------------------------- 261 (520)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccCChHHHHHHHhhhHHHHHHHH
Q 000406 1031 RDVRYLSLALVGLGFGCIIFMTGQQGFCGWAGTKLTMRVRELLFRSILKQEPGWFDFEENSTGVLVSRLSIDSISFRSVL 1110 (1560)
Q Consensus 1031 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~ll~~~~~ffd~~~~~~G~il~R~s~Di~~i~~~l 1110 (1560)
.. - .+
T Consensus 262 -------------------------------------------------------~~--~------~~------------ 266 (520)
T TIGR03269 262 -------------------------------------------------------EG--V------SE------------ 266 (520)
T ss_pred -------------------------------------------------------hh--c------hh------------
Confidence 00 0 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHhcchhHHHhc
Q 000406 1111 GDRFSVLLMGLSSAAVGLGVSLVLNWRLTLVAAALTPFTLGASYLSLIINVGPKIDNSSYAKASSIASGAVSNIRTVTTF 1190 (1560)
Q Consensus 1111 ~~~l~~~l~~~~~~i~~l~~~~~~~~~l~lv~l~~ipl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf 1190 (1560)
T Consensus 267 -------------------------------------------------------------------------------- 266 (520)
T TIGR03269 267 -------------------------------------------------------------------------------- 266 (520)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cchHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHH
Q 000406 1191 SAQEQIINSFDKALSEPKKKSVKRSQILGLTLGFSQGAMYVAYTFTLWFGAYLVKQGHASFGVVYKIFLILVLSSFSVGQ 1270 (1560)
Q Consensus 1191 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~i~~ 1270 (1560)
T Consensus 267 -------------------------------------------------------------------------------- 266 (520)
T TIGR03269 267 -------------------------------------------------------------------------------- 266 (520)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhHHHHHHHHHHHHHHHHHhccCCccccccccccCCCCCccEEEEEEEEEcCC--CCCccceeeeeEEEeCCcEEEEE
Q 000406 1271 LAGLAPDTSMAATAIPAVLQITKRKPLIDNVKGRKLERSKPLGIELKMVTFTYPS--RPEVTVLKDFCLKVKGGSMVALV 1348 (1560)
Q Consensus 1271 l~~~~~~~~~~~~s~~ri~~i~~~~~~~~~~~~~~~~~~~~~~I~~~nVsf~Y~~--~~~~~vL~~vSf~I~~GE~vaIV 1348 (1560)
. .. ..+. . . ...-|+++||+++|+. +...++|+|+||+|++||++||+
T Consensus 267 -------~-------~~------~~~~-~------~---~~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~ 316 (520)
T TIGR03269 267 -------V-------EK------ECEV-E------V---GEPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIV 316 (520)
T ss_pred -------h-------cc------cccc-C------C---CCceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEE
Confidence 0 00 0000 0 0 0124999999999953 11246999999999999999999
Q ss_pred cCCCCCHHHHHHHHhcccCCCccEEEEC-CE---ecCCCC---HHHHhhceEEEcCCCCCCC-ccHHHHHhcCCC-CCCH
Q 000406 1349 GGSGSGKSTVIWLIQRFYDPNQGKVMIE-GV---DLREIN---VKWLRKQTALVGQEPALFA-GTIRDNIALGNP-KASW 1419 (1560)
Q Consensus 1349 G~SGSGKSTLl~lL~rl~~p~~G~I~Id-Gv---di~~i~---l~~LR~~I~~VpQdp~LF~-gTIreNL~~g~~-~~sd 1419 (1560)
|+||||||||+++|+|+++|++|+|.++ |. ++...+ ...+|++|+||||++.+|. .|++||+.++.. ....
T Consensus 317 G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~ 396 (520)
T TIGR03269 317 GTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPD 396 (520)
T ss_pred CCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCH
Confidence 9999999999999999999999999996 64 334333 2346778999999998887 499999975311 1111
Q ss_pred ----HHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHH
Q 000406 1420 ----AEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDAL 1495 (1560)
Q Consensus 1420 ----~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L 1495 (1560)
+++.++++..++.+. ..+.........||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|
T Consensus 397 ~~~~~~~~~~l~~~~l~~~------~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l 470 (520)
T TIGR03269 397 ELARMKAVITLKMVGFDEE------KAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSI 470 (520)
T ss_pred HHHHHHHHHHHHhCCCCCc------cchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 123333333333110 0000123344579999999999999999999999999999999999999999999
Q ss_pred HHhcC--CceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHHHh
Q 000406 1496 RKVSK--RATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLA 1539 (1560)
Q Consensus 1496 ~~~~~--~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eLl~ 1539 (1560)
+++.+ +.|||+|||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 471 ~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 517 (520)
T TIGR03269 471 LKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEIVE 517 (520)
T ss_pred HHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 98743 6899999999999876 99999999999999999998875
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-69 Score=681.16 Aligned_cols=456 Identities=21% Similarity=0.370 Sum_probs=349.7
Q ss_pred cEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccH-HHHhcc
Q 000406 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQV-KWLRTQ 750 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~-~~lr~~ 750 (1560)
.|+++|++++|++ ..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+. ..+|++
T Consensus 4 ~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 80 (501)
T PRK11288 4 YLSFDGIGKTFPG---VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAG 80 (501)
T ss_pred eEEEeeeEEEECC---EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCC
Confidence 4899999999963 358999999999999999999999999999999999999999999999999875543 456788
Q ss_pred EEEEecCCcCccc-cHHHHHhcCCCC-----CCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHH
Q 000406 751 IGMVGQEPILFAT-SILENVLMGKEN-----ATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALAR 824 (1560)
Q Consensus 751 i~~v~Q~~~lf~~-Tv~eNi~~g~~~-----~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialAR 824 (1560)
|+||+|++.+++. |++||+.++... ....+.. ..+.+.++.+ |++........+||||||||++|||
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lar 153 (501)
T PRK11288 81 VAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLN-----YEAREQLEHL--GVDIDPDTPLKYLSIGQRQMVEIAK 153 (501)
T ss_pred EEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHH-----HHHHHHHHHc--CCCCCcCCchhhCCHHHHHHHHHHH
Confidence 9999999988875 999999986421 1111111 1223445555 4544456677899999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhHhhhcch
Q 000406 825 AMIKDPRILLLDEPTSALDSESESIVQQAIDKIS-VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLERGGA 902 (1560)
Q Consensus 825 Al~~~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l~~~~~~ 902 (1560)
||+.+|+||||||||++||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|+++..++..+...
T Consensus 154 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~---- 229 (501)
T PRK11288 154 ALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDDMAQVD---- 229 (501)
T ss_pred HHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCccccCC----
Confidence 9999999999999999999999999999998874 58999999999999876 99999999999986442110000
Q ss_pred HHHHHHHHHhhccCccccchhcccccchhhhhhhHHHhhhhhhhhhhhhhhhhhhhHHHhhhhHhhhhCCCCchhhHHHH
Q 000406 903 YHDLVKLASEAVSQPQSKQKDAKRGIEFSIYEKSVIEVSRSRYANEVSKSKYFKSMQAEIQTVEEEQQKPRPRKFQLSEI 982 (1560)
Q Consensus 903 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 982 (1560)
.. . +
T Consensus 230 -----------------------~~-------------------------~----------------------------~ 233 (501)
T PRK11288 230 -----------------------RD-------------------------Q----------------------------L 233 (501)
T ss_pred -----------------------HH-------------------------H----------------------------H
Confidence 00 0 0
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 983 WKLQRPEFAMIIFGFILGMHAGAILSIFPLILGQALQVYFDDTASTLRRDVRYLSLALVGLGFGCIIFMTGQQGFCGWAG 1062 (1560)
Q Consensus 983 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 1062 (1560)
..
T Consensus 234 ~~------------------------------------------------------------------------------ 235 (501)
T PRK11288 234 VQ------------------------------------------------------------------------------ 235 (501)
T ss_pred HH------------------------------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCcccccCChHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 1063 TKLTMRVRELLFRSILKQEPGWFDFEENSTGVLVSRLSIDSISFRSVLGDRFSVLLMGLSSAAVGLGVSLVLNWRLTLVA 1142 (1560)
Q Consensus 1063 ~~~~~~Lr~~l~~~ll~~~~~ffd~~~~~~G~il~R~s~Di~~i~~~l~~~l~~~l~~~~~~i~~l~~~~~~~~~l~lv~ 1142 (1560)
.+...+. .
T Consensus 236 -------------~~~~~~~---~-------------------------------------------------------- 243 (501)
T PRK11288 236 -------------AMVGREI---G-------------------------------------------------------- 243 (501)
T ss_pred -------------HhcCCCc---c--------------------------------------------------------
Confidence 0000000 0
Q ss_pred HHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHhcchhHHHhccchHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 000406 1143 AALTPFTLGASYLSLIINVGPKIDNSSYAKASSIASGAVSNIRTVTTFSAQEQIINSFDKALSEPKKKSVKRSQILGLTL 1222 (1560)
Q Consensus 1143 l~~ipl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1222 (1560)
T Consensus 244 -------------------------------------------------------------------------------- 243 (501)
T PRK11288 244 -------------------------------------------------------------------------------- 243 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccCCcccccc
Q 000406 1223 GFSQGAMYVAYTFTLWFGAYLVKQGHASFGVVYKIFLILVLSSFSVGQLAGLAPDTSMAATAIPAVLQITKRKPLIDNVK 1302 (1560)
Q Consensus 1223 ~~~~~~~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~s~~ri~~i~~~~~~~~~~~ 1302 (1560)
. .....+.
T Consensus 244 ----------------------------------------------------------------~---~~~~~~~----- 251 (501)
T PRK11288 244 ----------------------------------------------------------------D---IYGYRPR----- 251 (501)
T ss_pred ----------------------------------------------------------------c---ccccccc-----
Confidence 0 0000000
Q ss_pred ccccCCCCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCC
Q 000406 1303 GRKLERSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLRE 1382 (1560)
Q Consensus 1303 ~~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~ 1382 (1560)
...+..++++||++. .+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++..
T Consensus 252 -----~~~~~~l~~~~~~~~-------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~ 319 (501)
T PRK11288 252 -----PLGEVRLRLDGLKGP-------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDI 319 (501)
T ss_pred -----CCCCcEEEEeccccC-------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCC
Confidence 001124889999842 38999999999999999999999999999999999999999999999999876
Q ss_pred CCH-HHHhhceEEEcCCCC---CC-CccHHHHHhcCCC-CC-------CHHHHHHHHHHHhHHHHHHhCCCCcc-ccccC
Q 000406 1383 INV-KWLRKQTALVGQEPA---LF-AGTIRDNIALGNP-KA-------SWAEIEEAAEEAYIHKFISSLPQGYE-TQVGE 1448 (1560)
Q Consensus 1383 i~l-~~LR~~I~~VpQdp~---LF-~gTIreNL~~g~~-~~-------sd~eI~~al~~a~l~~~I~~Lp~Gld-t~Vge 1448 (1560)
.+. +.+|+.++|+||++. +| ..|+.||+.++.. .. ...+. ...+.+++..+ |++ .....
T Consensus 320 ~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~ 392 (501)
T PRK11288 320 RSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWE-----AENADRFIRSL--NIKTPSREQ 392 (501)
T ss_pred CCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHH-----HHHHHHHHHhc--CcccCCccC
Confidence 543 456788999999973 55 4799999986421 10 11111 11223333333 221 12233
Q ss_pred CCCCCChHHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCceEEEEecChHHHhh-cCEEEEEeCC
Q 000406 1449 SGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVS-KRATTIVVAHRLSTIRE-ANMIAVVRDG 1526 (1560)
Q Consensus 1449 ~G~~LSGGQrQRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~-~~~TvI~IAHRlsti~~-aDrIlVLd~G 1526 (1560)
...+||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|+++. .+.|||+|||+++.+.. ||+|++|++|
T Consensus 393 ~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g 472 (501)
T PRK11288 393 LIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREG 472 (501)
T ss_pred ccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECC
Confidence 344799999999999999999999999999999999999999999998864 47899999999999966 9999999999
Q ss_pred EEEEecCHHHHH
Q 000406 1527 AVVEYGSHETLL 1538 (1560)
Q Consensus 1527 ~IvE~Gt~~eLl 1538 (1560)
++++.|+++|..
T Consensus 473 ~i~~~~~~~~~~ 484 (501)
T PRK11288 473 RIAGELAREQAT 484 (501)
T ss_pred EEEEEEccccCC
Confidence 999999887754
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-67 Score=670.20 Aligned_cols=531 Identities=18% Similarity=0.195 Sum_probs=427.5
Q ss_pred HHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 979 LSEIWKLQR-PEFAMIIFGFILGMHAGAILSIFPLILGQALQVYFDDTASTLRRDVRYLSLALVGLGFGCIIFMTGQQGF 1057 (1560)
Q Consensus 979 ~~~l~~~~~-~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 1057 (1560)
.+.++++.+ +.++.++++++++++.+......|.++..+++. .... .. .....++++.++..++.++..++
T Consensus 5 ~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~----~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~ 76 (555)
T TIGR01194 5 IGEILALLRSPFPAITAFSIALGLAGGLAIIALLASINNAIHE----ENFL--GQ--GSLFSFGGLCLLALLFRIGADIF 76 (555)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCcc--cc--hHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777 788888888888777777666666665554331 1000 00 01112333444556677788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCcccccCChHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 1058 CGWAGTKLTMRVRELLFRSILKQEPGWFDFEENSTGVLVSRLSIDSISFRSVLGDRFSVLLMGLSSAAVGLGVSLVLNWR 1137 (1560)
Q Consensus 1058 ~~~~~~~~~~~Lr~~l~~~ll~~~~~ffd~~~~~~G~il~R~s~Di~~i~~~l~~~l~~~l~~~~~~i~~l~~~~~~~~~ 1137 (1560)
...++.++..++|..+|++++++|+.||+ +.++|++++|+++|++.+++++.. ++.++..+++.++.++++++++|.
T Consensus 77 ~~~~~~~~~~~lR~~l~~~l~~~~~~~~~--~~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~ 153 (555)
T TIGR01194 77 PAYAGMHIIANLRIALCEKILGAPIEEID--RRGAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAYLSVP 153 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHH--hcCcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHH
Confidence 89999999999999999999999999987 689999999999999999998864 777888888888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHhcchhhhhhhHHHHHHHHHHHhcchhHHHhccchH--HHHHHHHHHHhhhHHHHHHH
Q 000406 1138 LTLVAAALTPFTLGASYLS-LIINVGPKIDNSSYAKASSIASGAVSNIRTVTTFSAQE--QIINSFDKALSEPKKKSVKR 1214 (1560)
Q Consensus 1138 l~lv~l~~ipl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~e~--~~~~~~~~~~~~~~~~~~~~ 1214 (1560)
+++++++++|+.++...+. .+........+....+..+.+.|.+.|++++|+|+.++ ...+++.+..++..+...+.
T Consensus 154 L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (555)
T TIGR01194 154 MFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIE 233 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9999888888766655443 23323233335566778899999999999999999954 55778888888777776665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcc
Q 000406 1215 SQILGLTLGFSQGAMYVAYTFTLWFGAYLVKQGHASFGVVYKIFLILVLSSFSVGQLAGLAPDTSMAATAIPAVLQITKR 1294 (1560)
Q Consensus 1215 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~s~~ri~~i~~~ 1294 (1560)
.........+...+..+...+.++++.+. |.+++|.+++++++...+..|+..+...+..+..+..+++|+.++++.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~ 310 (555)
T TIGR01194 234 ILIFIAAENFGQLLFFLLIGCALFAAAMF---ASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGER 310 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55554444444444444444444554433 789999999999999999999999999999999999999999999753
Q ss_pred CCc--cc-ccc-ccc----cCCCCCccEEEEEEEEEcCCCC--CccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhc
Q 000406 1295 KPL--ID-NVK-GRK----LERSKPLGIELKMVTFTYPSRP--EVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQR 1364 (1560)
Q Consensus 1295 ~~~--~~-~~~-~~~----~~~~~~~~I~~~nVsf~Y~~~~--~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~r 1364 (1560)
..+ .. +.. ... ......+.|+|+||+|+|++.+ ..++|+|+||+|++||++|||||||||||||+++|+|
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g 390 (555)
T TIGR01194 311 FNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCG 390 (555)
T ss_pred hccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 211 11 000 000 0111235699999999997532 2369999999999999999999999999999999999
Q ss_pred ccCCCccEEEECCEecCCCCHHHHhhceEEEcCCCCCCCccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCccc
Q 000406 1365 FYDPNQGKVMIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYET 1444 (1560)
Q Consensus 1365 l~~p~~G~I~IdGvdi~~i~l~~LR~~I~~VpQdp~LF~gTIreNL~~g~~~~sd~eI~~al~~a~l~~~I~~Lp~Gldt 1444 (1560)
+|+|++|+|.+||+|+++++.+++|+++++|+||++||++|+++|+ .+++++++++++++.+++++++..+|+||||
T Consensus 391 ~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~---~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t 467 (555)
T TIGR01194 391 LYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE---GEHASLDNAQQYLQRLEIADKVKIEDGGFST 467 (555)
T ss_pred CCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc---ccchhHHHHHHHHHHcCCchhhcccccccCC
Confidence 9999999999999999999999999999999999999999999996 4578899999999999999999999999999
Q ss_pred cccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHH-h-cCCceEEEEecChHHHhhcCEEEE
Q 000406 1445 QVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRK-V-SKRATTIVVAHRLSTIREANMIAV 1522 (1560)
Q Consensus 1445 ~Vge~G~~LSGGQrQRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~-~-~~~~TvI~IAHRlsti~~aDrIlV 1522 (1560)
. .+|||||||||+||||++++|+|||||||||+||++||+.|++.+.+ . .+++|+|+||||++++..||+|+|
T Consensus 468 ~-----~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~ 542 (555)
T TIGR01194 468 T-----TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIK 542 (555)
T ss_pred c-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEE
Confidence 5 68999999999999999999999999999999999999999987743 3 468999999999999999999999
Q ss_pred EeCCEEEEe
Q 000406 1523 VRDGAVVEY 1531 (1560)
Q Consensus 1523 Ld~G~IvE~ 1531 (1560)
|++|+|+|.
T Consensus 543 l~~G~i~~~ 551 (555)
T TIGR01194 543 LAAGCIVKD 551 (555)
T ss_pred EECCEEEEe
Confidence 999999984
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-69 Score=677.20 Aligned_cols=459 Identities=24% Similarity=0.375 Sum_probs=349.3
Q ss_pred EEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCC--CccEEEECCeecCCccHHH-Hhc
Q 000406 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDP--TKGLITLDGHDLKSLQVKW-LRT 749 (1560)
Q Consensus 673 i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~--~~G~I~i~g~~i~~~~~~~-lr~ 749 (1560)
|+++|++++|++ .++|+||||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++...+... .++
T Consensus 2 l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (500)
T TIGR02633 2 LEMKGIVKTFGG---VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERA 78 (500)
T ss_pred EEEEeEEEEeCC---eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 789999999963 4589999999999999999999999999999999999987 7999999999998766543 456
Q ss_pred cEEEEecCCcCccc-cHHHHHhcCCCC------CCHHHHHHHHHHhhhHHHHHhCCCCCCccc-CCCCCCCChHHHHHHH
Q 000406 750 QIGMVGQEPILFAT-SILENVLMGKEN------ATMKEAVAACKAASAHSFISELPLGYDTQV-GDRGTQLSGGQKQRIA 821 (1560)
Q Consensus 750 ~i~~v~Q~~~lf~~-Tv~eNi~~g~~~------~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~-~~~g~~LSgGQrQRia 821 (1560)
+|+||+|++.++.. |++||+.++... ...++.. ..+.+.++.+ |+.... .....+||||||||++
T Consensus 79 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~ 151 (500)
T TIGR02633 79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMY-----LRAKNLLREL--QLDADNVTRPVGDYGGGQQQLVE 151 (500)
T ss_pred CEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHH-----HHHHHHHHHc--CCCCCcccCchhhCCHHHHHHHH
Confidence 79999999988875 999999886421 1111111 1223445554 443322 3446789999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhHhhh
Q 000406 822 LARAMIKDPRILLLDEPTSALDSESESIVQQAIDKI-SVGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLER 899 (1560)
Q Consensus 822 lARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l~~~ 899 (1560)
|||||+.+|+||||||||++||+.+...+.+.|+++ .+|+|||+|||+++.+.. ||+|++|++|+++..|+++++...
T Consensus 152 iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 231 (500)
T TIGR02633 152 IAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTMSED 231 (500)
T ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccCCHH
Confidence 999999999999999999999999999999999887 358899999999999876 999999999999876543221000
Q ss_pred cchHHHHHHHHHhhccCccccchhcccccchhhhhhhHHHhhhhhhhhhhhhhhhhhhhHHHhhhhHhhhhCCCCchhhH
Q 000406 900 GGAYHDLVKLASEAVSQPQSKQKDAKRGIEFSIYEKSVIEVSRSRYANEVSKSKYFKSMQAEIQTVEEEQQKPRPRKFQL 979 (1560)
Q Consensus 900 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 979 (1560)
.
T Consensus 232 -----------------------------------------------------~-------------------------- 232 (500)
T TIGR02633 232 -----------------------------------------------------D-------------------------- 232 (500)
T ss_pred -----------------------------------------------------H--------------------------
Confidence 0
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 980 SEIWKLQRPEFAMIIFGFILGMHAGAILSIFPLILGQALQVYFDDTASTLRRDVRYLSLALVGLGFGCIIFMTGQQGFCG 1059 (1560)
Q Consensus 980 ~~l~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 1059 (1560)
. . ..+
T Consensus 233 --~----------------~-------------------~~~-------------------------------------- 237 (500)
T TIGR02633 233 --I----------------I-------------------TMM-------------------------------------- 237 (500)
T ss_pred --H----------------H-------------------HHH--------------------------------------
Confidence 0 0 000
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCcccccCChHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 1060 WAGTKLTMRVRELLFRSILKQEPGWFDFEENSTGVLVSRLSIDSISFRSVLGDRFSVLLMGLSSAAVGLGVSLVLNWRLT 1139 (1560)
Q Consensus 1060 ~~~~~~~~~Lr~~l~~~ll~~~~~ffd~~~~~~G~il~R~s~Di~~i~~~l~~~l~~~l~~~~~~i~~l~~~~~~~~~l~ 1139 (1560)
+.. + ..
T Consensus 238 -------------------------~~~---~-------~~--------------------------------------- 243 (500)
T TIGR02633 238 -------------------------VGR---E-------IT--------------------------------------- 243 (500)
T ss_pred -------------------------hCc---c-------cc---------------------------------------
Confidence 000 0 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHhcchhHHHhccchHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 000406 1140 LVAAALTPFTLGASYLSLIINVGPKIDNSSYAKASSIASGAVSNIRTVTTFSAQEQIINSFDKALSEPKKKSVKRSQILG 1219 (1560)
Q Consensus 1140 lv~l~~ipl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 1219 (1560)
T Consensus 244 -------------------------------------------------------------------------------- 243 (500)
T TIGR02633 244 -------------------------------------------------------------------------------- 243 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccCCccc
Q 000406 1220 LTLGFSQGAMYVAYTFTLWFGAYLVKQGHASFGVVYKIFLILVLSSFSVGQLAGLAPDTSMAATAIPAVLQITKRKPLID 1299 (1560)
Q Consensus 1220 ~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~s~~ri~~i~~~~~~~~ 1299 (1560)
...+. .
T Consensus 244 -------------------------------------------------------------------------~~~~~-~ 249 (500)
T TIGR02633 244 -------------------------------------------------------------------------SLYPH-E 249 (500)
T ss_pred -------------------------------------------------------------------------ccccc-c
Confidence 00000 0
Q ss_pred cccccccCCCCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCC-CccEEEECCE
Q 000406 1300 NVKGRKLERSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDP-NQGKVMIEGV 1378 (1560)
Q Consensus 1300 ~~~~~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p-~~G~I~IdGv 1378 (1560)
. . . ....-|+++|++++|+.+.+..+|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.++|.
T Consensus 250 ~-~--~---~~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~ 323 (500)
T TIGR02633 250 P-H--E---IGDVILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGK 323 (500)
T ss_pred c-c--C---CCCceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCE
Confidence 0 0 0 001248999999999432123599999999999999999999999999999999999985 8999999999
Q ss_pred ecCCCCH-HHHhhceEEEcCCC---CCCC-ccHHHHHhcCCCC-------CCHHHHHHHHHHHhHHHHHHhCCCCccc-c
Q 000406 1379 DLREINV-KWLRKQTALVGQEP---ALFA-GTIRDNIALGNPK-------ASWAEIEEAAEEAYIHKFISSLPQGYET-Q 1445 (1560)
Q Consensus 1379 di~~i~l-~~LR~~I~~VpQdp---~LF~-gTIreNL~~g~~~-------~sd~eI~~al~~a~l~~~I~~Lp~Gldt-~ 1445 (1560)
++...+. ..+|++++||||++ .+|+ .|+++|+.++... ....+ ....+.+++..+ |+.. .
T Consensus 324 ~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~--~l~~~~ 396 (500)
T TIGR02633 324 PVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAA-----ELQIIGSAIQRL--KVKTAS 396 (500)
T ss_pred ECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHH-----HHHHHHHHHHhc--CccCCC
Confidence 9875543 56788999999996 3565 5999999874210 01111 112223333333 2211 1
Q ss_pred ccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCceEEEEecChHHHhh-cCEEEEE
Q 000406 1446 VGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVS-KRATTIVVAHRLSTIRE-ANMIAVV 1523 (1560)
Q Consensus 1446 Vge~G~~LSGGQrQRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~-~~~TvI~IAHRlsti~~-aDrIlVL 1523 (1560)
.......||||||||++|||||+.+|+||||||||++||+.+.+.+++.|+++. ++.|||+|||+++.+.. ||+|++|
T Consensus 397 ~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l 476 (500)
T TIGR02633 397 PFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVI 476 (500)
T ss_pred ccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEE
Confidence 223344799999999999999999999999999999999999999999998864 46899999999999976 9999999
Q ss_pred eCCEEEEecCHHH
Q 000406 1524 RDGAVVEYGSHET 1536 (1560)
Q Consensus 1524 d~G~IvE~Gt~~e 1536 (1560)
++|+++..++.++
T Consensus 477 ~~G~i~~~~~~~~ 489 (500)
T TIGR02633 477 GEGKLKGDFVNHA 489 (500)
T ss_pred ECCEEEEEEcccc
Confidence 9999998775443
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-69 Score=604.02 Aligned_cols=473 Identities=30% Similarity=0.463 Sum_probs=365.0
Q ss_pred cEEEEEEEEEcCCC-CCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCC-----CccEEEECCeecCCccHH
Q 000406 672 KIEFKGVTFAYPSR-PETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDP-----TKGLITLDGHDLKSLQVK 745 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~-~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~-----~~G~I~i~g~~i~~~~~~ 745 (1560)
-++++|++..|... ....++++|||+|.+||++||||+||||||-..+.++|+++. -+|+|.++|.|+-..+..
T Consensus 6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~ 85 (534)
T COG4172 6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASER 85 (534)
T ss_pred ceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHH
Confidence 47889998888532 245689999999999999999999999999999999999864 489999999999888877
Q ss_pred HHhc----cEEEEecCCcC--ccc-cHHHHH----hcCCCC---CCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCC
Q 000406 746 WLRT----QIGMVGQEPIL--FAT-SILENV----LMGKEN---ATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQ 811 (1560)
Q Consensus 746 ~lr~----~i~~v~Q~~~l--f~~-Tv~eNi----~~g~~~---~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~ 811 (1560)
.+|+ +|++|+|||.- -+- ||..-| .....- ...+++.+.++.+++. + -...+...+.+
T Consensus 86 ~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~-------~-p~~rl~~yPHe 157 (534)
T COG4172 86 QLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIP-------E-PEKRLDAYPHE 157 (534)
T ss_pred HHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCC-------c-hhhhhhhCCcc
Confidence 7664 79999999953 221 554443 332211 1122233333333321 1 12345677899
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCcccccc-CCEEEEEeCCeEE
Q 000406 812 LSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKIS--VGRTTIVIAHRLATVKN-ANTIVVLDQGSVV 888 (1560)
Q Consensus 812 LSgGQrQRialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv 888 (1560)
|||||||||.||.||+.+|++||-||||.|||......|.+.|+++. .|..+++||||+..++. ||||.||.+|+++
T Consensus 158 LSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~iv 237 (534)
T COG4172 158 LSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIV 237 (534)
T ss_pred cCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEe
Confidence 99999999999999999999999999999999999999999999884 48999999999999987 9999999999999
Q ss_pred EecChhhHhhhc-chHHHHHHHHHhhccCccccchhcccccchhhhhhhHHHhhhhhhhhhhhhhhhhhhhHHHhhhhHh
Q 000406 889 EIGNHRQLLERG-GAYHDLVKLASEAVSQPQSKQKDAKRGIEFSIYEKSVIEVSRSRYANEVSKSKYFKSMQAEIQTVEE 967 (1560)
Q Consensus 889 ~~G~~~~l~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 967 (1560)
|.|+.+++.+.. ..|....-..
T Consensus 238 E~~~t~~lF~~PqHpYTr~Ll~a--------------------------------------------------------- 260 (534)
T COG4172 238 ETGTTETLFAAPQHPYTRKLLAA--------------------------------------------------------- 260 (534)
T ss_pred ecCcHHHHhhCCCChHHHHHHhc---------------------------------------------------------
Confidence 999988776531 1121111000
Q ss_pred hhhCCCCchhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Q 000406 968 EQQKPRPRKFQLSEIWKLQRPEFAMIIFGFILGMHAGAILSIFPLILGQALQVYFDDTASTLRRDVRYLSLALVGLGFGC 1047 (1560)
Q Consensus 968 ~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 1047 (1560)
T Consensus 261 -------------------------------------------------------------------------------- 260 (534)
T COG4172 261 -------------------------------------------------------------------------------- 260 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccCChHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 1048 IIFMTGQQGFCGWAGTKLTMRVRELLFRSILKQEPGWFDFEENSTGVLVSRLSIDSISFRSVLGDRFSVLLMGLSSAAVG 1127 (1560)
Q Consensus 1048 ~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~ll~~~~~ffd~~~~~~G~il~R~s~Di~~i~~~l~~~l~~~l~~~~~~i~~ 1127 (1560)
T Consensus 261 -------------------------------------------------------------------------------- 260 (534)
T COG4172 261 -------------------------------------------------------------------------------- 260 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHhcchhHHHhccchHHHHHHHHHHHhhh
Q 000406 1128 LGVSLVLNWRLTLVAAALTPFTLGASYLSLIINVGPKIDNSSYAKASSIASGAVSNIRTVTTFSAQEQIINSFDKALSEP 1207 (1560)
Q Consensus 1128 l~~~~~~~~~l~lv~l~~ipl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~e~~~~~~~~~~~~~~ 1207 (1560)
T Consensus 261 -------------------------------------------------------------------------------- 260 (534)
T COG4172 261 -------------------------------------------------------------------------------- 260 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 000406 1208 KKKSVKRSQILGLTLGFSQGAMYVAYTFTLWFGAYLVKQGHASFGVVYKIFLILVLSSFSVGQLAGLAPDTSMAATAIPA 1287 (1560)
Q Consensus 1208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~s~~r 1287 (1560)
T Consensus 261 -------------------------------------------------------------------------------- 260 (534)
T COG4172 261 -------------------------------------------------------------------------------- 260 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhccCCccccccccccCCCCCccEEEEEEEEEcCCCC--------CccceeeeeEEEeCCcEEEEEcCCCCCHHHHH
Q 000406 1288 VLQITKRKPLIDNVKGRKLERSKPLGIELKMVTFTYPSRP--------EVTVLKDFCLKVKGGSMVALVGGSGSGKSTVI 1359 (1560)
Q Consensus 1288 i~~i~~~~~~~~~~~~~~~~~~~~~~I~~~nVsf~Y~~~~--------~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl 1359 (1560)
+|.-. ..+.+...+.-++.+||...|+-+. ...+.++|||++++||++||||.||||||||-
T Consensus 261 -------eP~g~---~~p~~~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG 330 (534)
T COG4172 261 -------EPSGD---PPPLPEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLG 330 (534)
T ss_pred -------CCCCC---CCCCCCCCCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHH
Confidence 00000 0000011122366666666664221 13489999999999999999999999999999
Q ss_pred HHHhcccCCCccEEEECCEecCCCCHHH---HhhceEEEcCCCC--CCC-ccHHHHHhcC----CCCCC----HHHHHHH
Q 000406 1360 WLIQRFYDPNQGKVMIEGVDLREINVKW---LRKQTALVGQEPA--LFA-GTIRDNIALG----NPKAS----WAEIEEA 1425 (1560)
Q Consensus 1360 ~lL~rl~~p~~G~I~IdGvdi~~i~l~~---LR~~I~~VpQdp~--LF~-gTIreNL~~g----~~~~s----d~eI~~a 1425 (1560)
.+|+|+.++. |+|.++|.++..++.++ +|+++-+|+|||+ |-+ .||-+-|.=| .|..+ ++.+.+|
T Consensus 331 ~allrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~a 409 (534)
T COG4172 331 LALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEA 409 (534)
T ss_pred HHHHhhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHH
Confidence 9999999876 99999999999998765 6899999999997 322 4666655433 34444 4557788
Q ss_pred HHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--Cce
Q 000406 1426 AEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSK--RAT 1503 (1560)
Q Consensus 1426 l~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~--~~T 1503 (1560)
++++|++.-... .-...||||||||||||||++-+|++++||||||+||....++|.+.|+++.+ +-+
T Consensus 410 L~EVGLDp~~r~----------RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~Ls 479 (534)
T COG4172 410 LEEVGLDPATRN----------RYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLS 479 (534)
T ss_pred HHHcCCChhHhh----------cCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCe
Confidence 888887654321 22457999999999999999999999999999999999999999999998754 468
Q ss_pred EEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHHHhhccChHHH-HHHH
Q 000406 1504 TIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLASHLNGVYA-SLVR 1551 (1560)
Q Consensus 1504 vI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eLl~~~~~g~y~-~l~~ 1551 (1560)
-++|+|+|..++. ||+|+||.+|+|||+|+.++++++ ....|. +|+.
T Consensus 480 YLFISHDL~VvrAl~~~viVm~~GkiVE~G~~~~if~~-P~~~YT~~L~~ 528 (534)
T COG4172 480 YLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFAN-PQHEYTRALLA 528 (534)
T ss_pred EEEEeccHHHHHHhhceEEEEeCCEEeeeCCHHHHhcC-CCcHHHHHHHH
Confidence 9999999999987 999999999999999999999985 455554 4443
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-69 Score=675.31 Aligned_cols=465 Identities=19% Similarity=0.358 Sum_probs=355.8
Q ss_pred cEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHHHh-cc
Q 000406 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLR-TQ 750 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr-~~ 750 (1560)
.|+++|++++|++ ..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...++ ..
T Consensus 11 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 87 (510)
T PRK15439 11 LLCARSISKQYSG---VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG 87 (510)
T ss_pred eEEEEeEEEEeCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence 5999999999963 4589999999999999999999999999999999999999999999999999877665544 57
Q ss_pred EEEEecCCcCccc-cHHHHHhcCCCCCCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHHhccC
Q 000406 751 IGMVGQEPILFAT-SILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKD 829 (1560)
Q Consensus 751 i~~v~Q~~~lf~~-Tv~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARAl~~~ 829 (1560)
++||+|++.++.. |++||+.++.... .+..+ .+.+.++.+ |++........+||||||||++|||||+.+
T Consensus 88 i~~v~q~~~~~~~~tv~e~l~~~~~~~--~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~aL~~~ 158 (510)
T PRK15439 88 IYLVPQEPLLFPNLSVKENILFGLPKR--QASMQ-----KMKQLLAAL--GCQLDLDSSAGSLEVADRQIVEILRGLMRD 158 (510)
T ss_pred EEEEeccCccCCCCcHHHHhhcccccc--hHHHH-----HHHHHHHHc--CCCccccCChhhCCHHHHHHHHHHHHHHcC
Confidence 9999999988875 9999999875321 11111 122334444 555555677789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhHhhhcchHHHHH
Q 000406 830 PRILLLDEPTSALDSESESIVQQAIDKIS-VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLERGGAYHDLV 907 (1560)
Q Consensus 830 p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l~~~~~~~~~l~ 907 (1560)
|+||||||||++||+.+...+.+.|+++. +|+|||+|||+++.+.. ||+|++|++|++++.|+++++.... ..
T Consensus 159 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~-----~~ 233 (510)
T PRK15439 159 SRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLSTDD-----II 233 (510)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCHHH-----HH
Confidence 99999999999999999999999998873 58999999999999866 9999999999999988876653210 00
Q ss_pred HHHHhhccCccccchhcccccchhhhhhhHHHhhhhhhhhhhhhhhhhhhhHHHhhhhHhhhhCCCCchhhHHHHHHhhh
Q 000406 908 KLASEAVSQPQSKQKDAKRGIEFSIYEKSVIEVSRSRYANEVSKSKYFKSMQAEIQTVEEEQQKPRPRKFQLSEIWKLQR 987 (1560)
Q Consensus 908 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 987 (1560)
...
T Consensus 234 ~~~----------------------------------------------------------------------------- 236 (510)
T PRK15439 234 QAI----------------------------------------------------------------------------- 236 (510)
T ss_pred HHH-----------------------------------------------------------------------------
Confidence 000
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 988 PEFAMIIFGFILGMHAGAILSIFPLILGQALQVYFDDTASTLRRDVRYLSLALVGLGFGCIIFMTGQQGFCGWAGTKLTM 1067 (1560)
Q Consensus 988 ~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 1067 (1560)
......
T Consensus 237 ----------------------------------~~~~~~---------------------------------------- 242 (510)
T PRK15439 237 ----------------------------------TPAARE---------------------------------------- 242 (510)
T ss_pred ----------------------------------hCcccc----------------------------------------
Confidence 000000
Q ss_pred HHHHHHHHHHHcCCCCCcccccCChHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 1068 RVRELLFRSILKQEPGWFDFEENSTGVLVSRLSIDSISFRSVLGDRFSVLLMGLSSAAVGLGVSLVLNWRLTLVAAALTP 1147 (1560)
Q Consensus 1068 ~Lr~~l~~~ll~~~~~ffd~~~~~~G~il~R~s~Di~~i~~~l~~~l~~~l~~~~~~i~~l~~~~~~~~~l~lv~l~~ip 1147 (1560)
....-.+.
T Consensus 243 ------------~~~~~~~~------------------------------------------------------------ 250 (510)
T PRK15439 243 ------------KSLSASQK------------------------------------------------------------ 250 (510)
T ss_pred ------------cccccccc------------------------------------------------------------
Confidence 00000000
Q ss_pred HHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHhcchhHHHhccchHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 000406 1148 FTLGASYLSLIINVGPKIDNSSYAKASSIASGAVSNIRTVTTFSAQEQIINSFDKALSEPKKKSVKRSQILGLTLGFSQG 1227 (1560)
Q Consensus 1148 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1227 (1560)
.
T Consensus 251 -----------------------------------------------------------~-------------------- 251 (510)
T PRK15439 251 -----------------------------------------------------------L-------------------- 251 (510)
T ss_pred -----------------------------------------------------------c--------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccCCccccccccccC
Q 000406 1228 AMYVAYTFTLWFGAYLVKQGHASFGVVYKIFLILVLSSFSVGQLAGLAPDTSMAATAIPAVLQITKRKPLIDNVKGRKLE 1307 (1560)
Q Consensus 1228 ~~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~s~~ri~~i~~~~~~~~~~~~~~~~ 1307 (1560)
. ...+..... .+
T Consensus 252 --------------------------------------------------------------~-~~~~~~~~~-----~~ 263 (510)
T PRK15439 252 --------------------------------------------------------------W-LELPGNRRQ-----QA 263 (510)
T ss_pred --------------------------------------------------------------c-ccccccccc-----cC
Confidence 0 000000000 00
Q ss_pred CCCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHH
Q 000406 1308 RSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKW 1387 (1560)
Q Consensus 1308 ~~~~~~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~ 1387 (1560)
..+.-|+++|++. .+|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+...
T Consensus 264 -~~~~~l~~~~l~~--------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~ 334 (510)
T PRK15439 264 -AGAPVLTVEDLTG--------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQ 334 (510)
T ss_pred -CCCceEEEeCCCC--------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHH
Confidence 0112489999983 1599999999999999999999999999999999999999999999999998777654
Q ss_pred -HhhceEEEcCCC---CCCC-ccHHHHHhcCC----CC-CCHHHHHHHHHHHhHHHHHHhCCCCcc-ccccCCCCCCChH
Q 000406 1388 -LRKQTALVGQEP---ALFA-GTIRDNIALGN----PK-ASWAEIEEAAEEAYIHKFISSLPQGYE-TQVGESGVQLSGG 1456 (1560)
Q Consensus 1388 -LR~~I~~VpQdp---~LF~-gTIreNL~~g~----~~-~sd~eI~~al~~a~l~~~I~~Lp~Gld-t~Vge~G~~LSGG 1456 (1560)
+|+.|+||||++ .+|. .|+.+|+.... +. ....+. ...+.+++..+ |++ .........||||
T Consensus 335 ~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgG 407 (510)
T PRK15439 335 RLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARE-----NAVLERYRRAL--NIKFNHAEQAARTLSGG 407 (510)
T ss_pred HHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHH-----HHHHHHHHHHc--CCCCCCccCccccCCcH
Confidence 467899999996 3665 59999985320 10 011111 11233344443 332 2233444579999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCceEEEEecChHHHhh-cCEEEEEeCCEEEEecCH
Q 000406 1457 QKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVS-KRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSH 1534 (1560)
Q Consensus 1457 QrQRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~-~~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~ 1534 (1560)
||||++|||||+.+|+||||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|+|+..|++
T Consensus 408 ~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~ 487 (510)
T PRK15439 408 NQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTG 487 (510)
T ss_pred HHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEcc
Confidence 9999999999999999999999999999999999999999864 47899999999999976 999999999999999998
Q ss_pred HHHHh
Q 000406 1535 ETLLA 1539 (1560)
Q Consensus 1535 ~eLl~ 1539 (1560)
+++..
T Consensus 488 ~~~~~ 492 (510)
T PRK15439 488 AAINV 492 (510)
T ss_pred ccCCH
Confidence 87764
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-68 Score=668.23 Aligned_cols=452 Identities=21% Similarity=0.334 Sum_probs=347.0
Q ss_pred EEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccH-HHHhccEEE
Q 000406 675 FKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQV-KWLRTQIGM 753 (1560)
Q Consensus 675 ~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~-~~lr~~i~~ 753 (1560)
++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ..++++++|
T Consensus 1 ~~nl~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 77 (491)
T PRK10982 1 MSNISKSFPG---VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISM 77 (491)
T ss_pred CCceEEEeCC---EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEE
Confidence 3689999963 458999999999999999999999999999999999999999999999999876543 345778999
Q ss_pred EecCCcCccc-cHHHHHhcCCCC-----CCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHHhc
Q 000406 754 VGQEPILFAT-SILENVLMGKEN-----ATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMI 827 (1560)
Q Consensus 754 v~Q~~~lf~~-Tv~eNi~~g~~~-----~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARAl~ 827 (1560)
|+|++.++.. ||+||+.++... ...++.. ..+.+.++.+ |++........+||||||||++|||||+
T Consensus 78 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lA~al~ 150 (491)
T PRK10982 78 VHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMY-----RDTKAIFDEL--DIDIDPRAKVATLSVSQMQMIEIAKAFS 150 (491)
T ss_pred EecccccccCCCHHHHhhcccccccccccCHHHHH-----HHHHHHHHHc--CCCCCccCchhhCCHHHHHHHHHHHHHH
Confidence 9999987764 999999876421 1111111 1223445554 5555567778899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhHhhhcchHHH
Q 000406 828 KDPRILLLDEPTSALDSESESIVQQAIDKIS-VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLERGGAYHD 905 (1560)
Q Consensus 828 ~~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l~~~~~~~~~ 905 (1560)
.+|+||||||||++||+.+...+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++++.|+++++... +
T Consensus 151 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~-----~ 225 (491)
T PRK10982 151 YNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLTMD-----K 225 (491)
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCCHH-----H
Confidence 9999999999999999999999999998873 58999999999999875 999999999999987765432100 0
Q ss_pred HHHHHHhhccCccccchhcccccchhhhhhhHHHhhhhhhhhhhhhhhhhhhhHHHhhhhHhhhhCCCCchhhHHHHHHh
Q 000406 906 LVKLASEAVSQPQSKQKDAKRGIEFSIYEKSVIEVSRSRYANEVSKSKYFKSMQAEIQTVEEEQQKPRPRKFQLSEIWKL 985 (1560)
Q Consensus 906 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 985 (1560)
...
T Consensus 226 ~~~----------------------------------------------------------------------------- 228 (491)
T PRK10982 226 IIA----------------------------------------------------------------------------- 228 (491)
T ss_pred HHH-----------------------------------------------------------------------------
Confidence 000
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 986 QRPEFAMIIFGFILGMHAGAILSIFPLILGQALQVYFDDTASTLRRDVRYLSLALVGLGFGCIIFMTGQQGFCGWAGTKL 1065 (1560)
Q Consensus 986 ~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 1065 (1560)
T Consensus 229 -------------------------------------------------------------------------------- 228 (491)
T PRK10982 229 -------------------------------------------------------------------------------- 228 (491)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHcCCCCCcccccCChHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 1066 TMRVRELLFRSILKQEPGWFDFEENSTGVLVSRLSIDSISFRSVLGDRFSVLLMGLSSAAVGLGVSLVLNWRLTLVAAAL 1145 (1560)
Q Consensus 1066 ~~~Lr~~l~~~ll~~~~~ffd~~~~~~G~il~R~s~Di~~i~~~l~~~l~~~l~~~~~~i~~l~~~~~~~~~l~lv~l~~ 1145 (1560)
.+...++.
T Consensus 229 ----------~~~~~~~~-------------------------------------------------------------- 236 (491)
T PRK10982 229 ----------MMVGRSLT-------------------------------------------------------------- 236 (491)
T ss_pred ----------HHhCCCcc--------------------------------------------------------------
Confidence 00000000
Q ss_pred HHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHhcchhHHHhccchHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 000406 1146 TPFTLGASYLSLIINVGPKIDNSSYAKASSIASGAVSNIRTVTTFSAQEQIINSFDKALSEPKKKSVKRSQILGLTLGFS 1225 (1560)
Q Consensus 1146 ipl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1225 (1560)
T Consensus 237 -------------------------------------------------------------------------------- 236 (491)
T PRK10982 237 -------------------------------------------------------------------------------- 236 (491)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccCCccccccccc
Q 000406 1226 QGAMYVAYTFTLWFGAYLVKQGHASFGVVYKIFLILVLSSFSVGQLAGLAPDTSMAATAIPAVLQITKRKPLIDNVKGRK 1305 (1560)
Q Consensus 1226 ~~~~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~s~~ri~~i~~~~~~~~~~~~~~ 1305 (1560)
. ..++. ..
T Consensus 237 -------------------------------------------------------------~-----~~~~~-~~----- 244 (491)
T PRK10982 237 -------------------------------------------------------------Q-----RFPDK-EN----- 244 (491)
T ss_pred -------------------------------------------------------------c-----ccccc-cC-----
Confidence 0 00000 00
Q ss_pred cCCCCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCH
Q 000406 1306 LERSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINV 1385 (1560)
Q Consensus 1306 ~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l 1385 (1560)
.+.+..|+++||++.| .++|+||||+|++||++||+|+||||||||+++|+|+.+|++|+|.++|.++...+.
T Consensus 245 --~~~~~~i~~~~l~~~~-----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~ 317 (491)
T PRK10982 245 --KPGEVILEVRNLTSLR-----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNA 317 (491)
T ss_pred --CCCCcEEEEeCccccc-----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCH
Confidence 0012248999999875 148999999999999999999999999999999999999999999999999987765
Q ss_pred H-HHhhceEEEcCCCC---CCC-ccHHHH-----HhcCCCC---CCHHHHHHHHHHHhHHHHHHhCCCCcc-ccccCCCC
Q 000406 1386 K-WLRKQTALVGQEPA---LFA-GTIRDN-----IALGNPK---ASWAEIEEAAEEAYIHKFISSLPQGYE-TQVGESGV 1451 (1560)
Q Consensus 1386 ~-~LR~~I~~VpQdp~---LF~-gTIreN-----L~~g~~~---~sd~eI~~al~~a~l~~~I~~Lp~Gld-t~Vge~G~ 1451 (1560)
. .+|+.++|+||++. +|. .|+.+| +...... .+..+.. ..+.+++..+ |+. -.......
T Consensus 318 ~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~ 390 (491)
T PRK10982 318 NEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMK-----SDTQWVIDSM--RVKTPGHRTQIG 390 (491)
T ss_pred HHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHH-----HHHHHHHHhc--CccCCCcccccc
Confidence 4 45778999999963 555 477766 3321110 1111111 1223334443 221 11234445
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCceEEEEecChHHHhh-cCEEEEEeCCEEE
Q 000406 1452 QLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVS-KRATTIVVAHRLSTIRE-ANMIAVVRDGAVV 1529 (1560)
Q Consensus 1452 ~LSGGQrQRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~-~~~TvI~IAHRlsti~~-aDrIlVLd~G~Iv 1529 (1560)
.||||||||++||||++.+|+||||||||++||+.+.+.|.+.|+++. +++|||+|||+++.+.. ||||++|++|+++
T Consensus 391 ~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~ 470 (491)
T PRK10982 391 SLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVA 470 (491)
T ss_pred cCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEE
Confidence 799999999999999999999999999999999999999999998754 57899999999999875 9999999999999
Q ss_pred EecCHHH
Q 000406 1530 EYGSHET 1536 (1560)
Q Consensus 1530 E~Gt~~e 1536 (1560)
..++.++
T Consensus 471 ~~~~~~~ 477 (491)
T PRK10982 471 GIVDTKT 477 (491)
T ss_pred EEEcccc
Confidence 8886643
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-66 Score=655.32 Aligned_cols=535 Identities=17% Similarity=0.127 Sum_probs=430.9
Q ss_pred cHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 000406 331 GLFSLFKYSTKLDMILVLLGCIGALINGGALPWYSYFFGNFVNKIANESSDPDKTQMMKDAEKICLLMTVLAAIVMMGAY 410 (1560)
Q Consensus 331 ~~~~l~~y~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 410 (1560)
..+.+++|++...++.++++++++++.+++....+++++.+++... .. .. . .+..++++.++.+++.+
T Consensus 4 ~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~----~~--~~--~----~~~~~~~~~~~~~~~~~ 71 (555)
T TIGR01194 4 AIGEILALLRSPFPAITAFSIALGLAGGLAIIALLASINNAIHEEN----FL--GQ--G----SLFSFGGLCLLALLFRI 71 (555)
T ss_pred hHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----cc--cc--h----HHHHHHHHHHHHHHHHH
Confidence 3566777766245566677777777777777777777776654211 00 00 0 11123334455566778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 411 LEITCWRLVGERSAQRIRTKYLRAVLRQDIAFFDTEVSTSDIMHGISSDIAQIQEVMGEKVAHFAHNIFTFICGYTVGFL 490 (1560)
Q Consensus 411 l~~~~~~~~~~~~~~~lr~~l~~~ll~~~l~ffd~~~~~G~i~~r~s~Dv~~i~~~l~~~l~~~i~~i~~~i~~~ii~~~ 490 (1560)
+..++....+.++..++|.+++++++++|+.+|+.. ++|++++|+++|++.+++.+.. +..++..++++++.++++++
T Consensus 72 ~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~-~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~ 149 (555)
T TIGR01194 72 GADIFPAYAGMHIIANLRIALCEKILGAPIEEIDRR-GAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAY 149 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHhc-CcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 888888899999999999999999999999999765 8999999999999999998864 77788888888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchH--HHHHHHHHHHHhHhHH
Q 000406 491 RSWKVSLVVLSVTPLMMFCGMAYKAVYVGLTSKEEASYRRAGSVAEQAISSIRTVFSFVAED--HFAVRYAGLLADSIPF 568 (1560)
Q Consensus 491 ~s~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIka~~~e~--~~~~~~~~~~~~~~~~ 568 (1560)
++|.+++++++++|+.+++..+..++..+...+.++..++..+.+.|.+.|+++||+|+.++ ...+++.+..++..+.
T Consensus 150 ~~~~L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~ 229 (555)
T TIGR01194 150 LSVPMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADL 229 (555)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999888888877777777666667777777788888999999999999999999954 5567787777776665
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 569 GAKLGFAKGAGMGVIYLVTYATWALAFWYGSILVARKELSGGAAIACFFGVNVGGRGLALSLSYFAQFAQGTVAATRVFE 648 (1560)
Q Consensus 569 ~~k~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~ls~g~~~~~l~~~~~~~~~l~~~~~~~~~~~~a~~a~~Ri~~ 648 (1560)
..+..........+..++.++...+.++++.+. +.++.|.++++..+...+..|+..+...+..+.++..+++|+.+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ 306 (555)
T TIGR01194 230 HIIEILIFIAAENFGQLLFFLLIGCALFAAAMF---ASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLAD 306 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555444444333433444444444444454433 68999999999988888889999999999999999999999999
Q ss_pred HHccCCCCCCC--CCC-CC----cCCCCcccEEEEEEEEEcCCCC--CccccccceeEecCCCEEEEecCCCCChHHHHH
Q 000406 649 IIDRVPEIDPY--NSE-GR----KLSSVSGKIEFKGVTFAYPSRP--ETVILRSLNLVIPSSKTLALVGTSGGGKSTVFA 719 (1560)
Q Consensus 649 ~l~~~~~~~~~--~~~-~~----~~~~~~g~i~~~~vs~~y~~~~--~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ 719 (1560)
+++..++.++. ... .. ......+.|+++||+|+|++.+ ..++|+|+||+|++||+++|+||||||||||++
T Consensus 307 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ 386 (555)
T TIGR01194 307 FGERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAK 386 (555)
T ss_pred HHhhhccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHH
Confidence 98632111010 000 00 0112246799999999997532 236899999999999999999999999999999
Q ss_pred HHhcCCCCCccEEEECCeecCCccHHHHhccEEEEecCCcCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHHHHHhCCC
Q 000406 720 LIERFYDPTKGLITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPL 799 (1560)
Q Consensus 720 ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Tv~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~ 799 (1560)
+|+|+++|++|+|.+||.++++++...+|+.++||+|++++|++|+++|+ .++.++++++++++.+++++++..+|+
T Consensus 387 ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~---~~~~~~~~~~~~~~~~~l~~~~~~lp~ 463 (555)
T TIGR01194 387 LFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE---GEHASLDNAQQYLQRLEIADKVKIEDG 463 (555)
T ss_pred HHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc---ccchhHHHHHHHHHHcCCchhhccccc
Confidence 99999999999999999999999999999999999999999999999995 345678889999999999999999999
Q ss_pred CCCcccCCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHH-Hh-cCCcEEEEEecCccccccCC
Q 000406 800 GYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAID-KI-SVGRTTIVIAHRLATVKNAN 877 (1560)
Q Consensus 800 gl~t~~~~~g~~LSgGQrQRialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~-~~-~~~~tvi~itH~l~~i~~~D 877 (1560)
|++|. .+|||||||||+||||++++|+|||||||||+||+++++.+.+.+. .+ .+++|+|+||||++.+..||
T Consensus 464 g~~t~-----~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d 538 (555)
T TIGR01194 464 GFSTT-----TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELAD 538 (555)
T ss_pred ccCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCC
Confidence 99984 6899999999999999999999999999999999999999988764 34 46899999999999998999
Q ss_pred EEEEEeCCeEEEe
Q 000406 878 TIVVLDQGSVVEI 890 (1560)
Q Consensus 878 ~i~vl~~G~iv~~ 890 (1560)
+|++|++|+++|.
T Consensus 539 ~i~~l~~G~i~~~ 551 (555)
T TIGR01194 539 QIIKLAAGCIVKD 551 (555)
T ss_pred EEEEEECCEEEEe
Confidence 9999999999875
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-67 Score=716.28 Aligned_cols=212 Identities=23% Similarity=0.372 Sum_probs=180.3
Q ss_pred cEEEEEEEEEcCCCC-CccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccC---CCccEEEECCEecCCCCHHHH
Q 000406 1313 GIELKMVTFTYPSRP-EVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYD---PNQGKVMIEGVDLREINVKWL 1388 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~~-~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~---p~~G~I~IdGvdi~~i~l~~L 1388 (1560)
.++++||++.|+.++ ++.+|+|||++|++||++||+||||||||||+++|+|+.+ |++|+|.+||.++. ..+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~ 834 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSF 834 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhh
Confidence 379999999996322 3469999999999999999999999999999999999998 78899999999985 257
Q ss_pred hhceEEEcCCCC-CCCccHHHHHhcCC----C-CCCHHH----HHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHH
Q 000406 1389 RKQTALVGQEPA-LFAGTIRDNIALGN----P-KASWAE----IEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQK 1458 (1560)
Q Consensus 1389 R~~I~~VpQdp~-LF~gTIreNL~~g~----~-~~sd~e----I~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQr 1458 (1560)
|+.++||||++. ++..||||||.++. | ..++++ +.++++..++ .+..|+.||+.|.+||||||
T Consensus 835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L-------~~~~d~~v~~~~~~LSgGqr 907 (1394)
T TIGR00956 835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEM-------ESYADAVVGVPGEGLNVEQR 907 (1394)
T ss_pred hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCC-------hhhCCCeeCCCCCCCCHHHh
Confidence 899999999875 55679999998641 2 233333 3444444443 34578999988889999999
Q ss_pred HHHHHHHHHccCCC-EEEEeCCCcCCCHHHHHHHHHHHHHh-cCCceEEEEecChHHH--hhcCEEEEEeCC-EEEEecC
Q 000406 1459 QRIAIARAILKGSR-VLLLDEASSALDLESEKHVQDALRKV-SKRATTIVVAHRLSTI--REANMIAVVRDG-AVVEYGS 1533 (1560)
Q Consensus 1459 QRLaLARALLr~p~-ILILDEaTSaLD~~Te~~I~~~L~~~-~~~~TvI~IAHRlsti--~~aDrIlVLd~G-~IvE~Gt 1533 (1560)
||++|||||+.+|+ ||+||||||+||+.+...|++.|+++ .+++|||+++|+++.. ..+|+|++|++| +++++|+
T Consensus 908 qRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~ 987 (1394)
T TIGR00956 908 KRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGD 987 (1394)
T ss_pred hHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECC
Confidence 99999999999997 99999999999999999999999987 4679999999999974 569999999997 9999998
Q ss_pred HH
Q 000406 1534 HE 1535 (1560)
Q Consensus 1534 ~~ 1535 (1560)
+.
T Consensus 988 ~~ 989 (1394)
T TIGR00956 988 LG 989 (1394)
T ss_pred cc
Confidence 63
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-68 Score=602.67 Aligned_cols=490 Identities=30% Similarity=0.427 Sum_probs=413.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCchhhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 000406 415 CWRLVGERSAQRIRTKYLRAVLRQDIAFFDTEVSTSDIMHGISSDIAQIQEVMGEKVAHFAHNIFTFIC-GYTVGFLRSW 493 (1560)
Q Consensus 415 ~~~~~~~~~~~~lr~~l~~~ll~~~l~ffd~~~~~G~i~~r~s~Dv~~i~~~l~~~l~~~i~~i~~~i~-~~ii~~~~s~ 493 (1560)
++...++.+...+--+.|.+++++++.|+-++ .+|.+..-+.....-|+..+...+.+.+..++-+.. +.++...++|
T Consensus 5 ~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~r-~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~~ 83 (497)
T COG5265 5 LFSPVGQIAVRVLAYVTFFHLHSLSLRFHLER-RTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYGW 83 (497)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhcchhhhhhc-ccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhccc
Confidence 44556777777888889999999999998544 667665544444444555554445555544444433 3344456789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHhHhHHHhHHH
Q 000406 494 KVSLVVLSVTPLMMFCGMAYKAVYVGLTSKEEASYRRAGSVAEQAISSIRTVFSFVAEDHFAVRYAGLLADSIPFGAKLG 573 (1560)
Q Consensus 494 ~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIka~~~e~~~~~~~~~~~~~~~~~~~k~~ 573 (1560)
+.+++.++++.+++++......+.....+......+++.+...++|-+.+|+|.|+.|+.+..+|...++.+.+...|..
T Consensus 84 ~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~ 163 (497)
T COG5265 84 WFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVH 163 (497)
T ss_pred HHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHHH
Confidence 98888888877777665555555556666677777888889999999999999999999999999999999988777765
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 000406 574 FAKGAGMGVIYLVTYATWALAFWYGSILVARKELSGGAAIACFFGVNVGGRGLALSLSYFAQFAQGTVAATRVFEIIDRV 653 (1560)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~ls~g~~~~~l~~~~~~~~~l~~~~~~~~~~~~a~~a~~Ri~~~l~~~ 653 (1560)
...++....-..+......+....++..+..|.+|.|+++....++...+.|+..+...+.++.++..-.++.+++++.+
T Consensus 164 ~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~~ 243 (497)
T COG5265 164 VSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVE 243 (497)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhccc
Confidence 54443333223333333444455667778899999999999888888888899998899999999999999999999865
Q ss_pred CCCCCCCCCCCcCC-CCcccEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEE
Q 000406 654 PEIDPYNSEGRKLS-SVSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732 (1560)
Q Consensus 654 ~~~~~~~~~~~~~~-~~~g~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I 732 (1560)
.+.... ...+..+ -..|.+.|++|+|.|.. .+++|+++||++++|+++||||+||+||||++++|.|+|++++|.|
T Consensus 244 ~~v~d~-pda~~L~~~~~g~v~F~~V~F~y~~--~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I 320 (497)
T COG5265 244 AEVSDA-PDAPPLWPVRLGAVAFINVSFAYDP--RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSI 320 (497)
T ss_pred hhhccC-CCCccccccccceEEEEEEEeeccc--cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceE
Confidence 554322 2222222 34688999999999974 4689999999999999999999999999999999999999999999
Q ss_pred EECCeecCCccHHHHhccEEEEecCCcCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCC
Q 000406 733 TLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQL 812 (1560)
Q Consensus 733 ~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Tv~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~L 812 (1560)
.+||+|+++...+.+|+.||+||||..||++|+..||.+|++..+++++..+++.++++++|+.+|+|++|.+||+|-.|
T Consensus 321 ~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vgerglkl 400 (497)
T COG5265 321 TIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKL 400 (497)
T ss_pred EEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCccccccCCEEEEEeCCeEEEecC
Q 000406 813 SGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGN 892 (1560)
Q Consensus 813 SgGQrQRialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~D~i~vl~~G~iv~~G~ 892 (1560)
||||||||||||+++++|+||+|||+||+||.+||+.++..|++..+|+|.++|+|||+++.+||.|+||++|+|+|.|+
T Consensus 401 Sggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~erg~ 480 (497)
T COG5265 401 SGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGT 480 (497)
T ss_pred cCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEecCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHhhhcchHHHHHH
Q 000406 893 HRQLLERGGAYHDLVK 908 (1560)
Q Consensus 893 ~~~l~~~~~~~~~l~~ 908 (1560)
|++|+..+|.|++||.
T Consensus 481 h~~ll~~~g~ya~mw~ 496 (497)
T COG5265 481 HEELLAAGGLYAEMWR 496 (497)
T ss_pred HHHHHHcCChHHHHhc
Confidence 9999999999999984
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-67 Score=661.70 Aligned_cols=452 Identities=20% Similarity=0.263 Sum_probs=341.9
Q ss_pred cEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHHHhccE
Q 000406 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQI 751 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 751 (1560)
.|+++|++++|++ ..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 3 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i 79 (490)
T PRK10938 3 SLQISQGTFRLSD---TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLV 79 (490)
T ss_pred eEEEEeEEEEcCC---eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHh
Confidence 3899999999963 3489999999999999999999999999999999999999999999999888766666667789
Q ss_pred EEEecCCcC--c-------cccHHHHHhcCCCCCCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHH
Q 000406 752 GMVGQEPIL--F-------ATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIAL 822 (1560)
Q Consensus 752 ~~v~Q~~~l--f-------~~Tv~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRial 822 (1560)
+|++|++.+ + ..|+++|+.++.. ..+++. +.++.+ |++...+....+||||||||++|
T Consensus 80 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---------~~l~~~--~l~~~~~~~~~~LSgG~~qrv~l 146 (490)
T PRK10938 80 SDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVK--DPARCE---------QLAQQF--GITALLDRRFKYLSTGETRKTLL 146 (490)
T ss_pred ceeccCcchhhcccchhhccccHHHhcccchh--HHHHHH---------HHHHHc--CCHhhhhCCcccCCHHHHHHHHH
Confidence 999998753 2 3488998765311 111222 233333 45445566778999999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhHhhhc
Q 000406 823 ARAMIKDPRILLLDEPTSALDSESESIVQQAIDKIS-VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLERG 900 (1560)
Q Consensus 823 ARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l~~~~ 900 (1560)
||||+.+|++|||||||++||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|+++..|+++++....
T Consensus 147 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~ 226 (490)
T PRK10938 147 CQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQA 226 (490)
T ss_pred HHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhcch
Confidence 999999999999999999999999999999998874 47899999999999876 9999999999999988766543210
Q ss_pred chHHHHHHHHHhhccCccccchhcccccchhhhhhhHHHhhhhhhhhhhhhhhhhhhhHHHhhhhHhhhhCCCCchhhHH
Q 000406 901 GAYHDLVKLASEAVSQPQSKQKDAKRGIEFSIYEKSVIEVSRSRYANEVSKSKYFKSMQAEIQTVEEEQQKPRPRKFQLS 980 (1560)
Q Consensus 901 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 980 (1560)
... . .. .
T Consensus 227 -----~~~--------------------------------------------~----~~----~---------------- 233 (490)
T PRK10938 227 -----LVA--------------------------------------------Q----LA----H---------------- 233 (490)
T ss_pred -----hhh--------------------------------------------h----hh----h----------------
Confidence 000 0 00 0
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 981 EIWKLQRPEFAMIIFGFILGMHAGAILSIFPLILGQALQVYFDDTASTLRRDVRYLSLALVGLGFGCIIFMTGQQGFCGW 1060 (1560)
Q Consensus 981 ~l~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 1060 (1560)
.
T Consensus 234 ------------------------------------------~------------------------------------- 234 (490)
T PRK10938 234 ------------------------------------------S------------------------------------- 234 (490)
T ss_pred ------------------------------------------h-------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCcccccCChHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 1061 AGTKLTMRVRELLFRSILKQEPGWFDFEENSTGVLVSRLSIDSISFRSVLGDRFSVLLMGLSSAAVGLGVSLVLNWRLTL 1140 (1560)
Q Consensus 1061 ~~~~~~~~Lr~~l~~~ll~~~~~ffd~~~~~~G~il~R~s~Di~~i~~~l~~~l~~~l~~~~~~i~~l~~~~~~~~~l~l 1140 (1560)
+++ . + .+. +.
T Consensus 235 --------------~~~-~-~---~~~---~~------------------------------------------------ 244 (490)
T PRK10938 235 --------------EQL-E-G---VQL---PE------------------------------------------------ 244 (490)
T ss_pred --------------hcc-C-c---ccc---Cc------------------------------------------------
Confidence 000 0 0 000 00
Q ss_pred HHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHhcchhHHHhccchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 000406 1141 VAAALTPFTLGASYLSLIINVGPKIDNSSYAKASSIASGAVSNIRTVTTFSAQEQIINSFDKALSEPKKKSVKRSQILGL 1220 (1560)
Q Consensus 1141 v~l~~ipl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1220 (1560)
T Consensus 245 -------------------------------------------------------------------------------- 244 (490)
T PRK10938 245 -------------------------------------------------------------------------------- 244 (490)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccCCcccc
Q 000406 1221 TLGFSQGAMYVAYTFTLWFGAYLVKQGHASFGVVYKIFLILVLSSFSVGQLAGLAPDTSMAATAIPAVLQITKRKPLIDN 1300 (1560)
Q Consensus 1221 ~~~~~~~~~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~s~~ri~~i~~~~~~~~~ 1300 (1560)
.. ++....
T Consensus 245 -----------------------------------------------------------------------~~-~~~~~~ 252 (490)
T PRK10938 245 -----------------------------------------------------------------------PD-EPSARH 252 (490)
T ss_pred -----------------------------------------------------------------------cc-cccccc
Confidence 00 000000
Q ss_pred ccccccCCCCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCC-CccEEEECCEe
Q 000406 1301 VKGRKLERSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDP-NQGKVMIEGVD 1379 (1560)
Q Consensus 1301 ~~~~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p-~~G~I~IdGvd 1379 (1560)
. .. ....-|+++||++.|++ ..+|+|+||+|++||++||+|+||||||||+++|+|+.+| ++|+|.++|.+
T Consensus 253 -~-~~---~~~~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~ 324 (490)
T PRK10938 253 -A-LP---ANEPRIVLNNGVVSYND---RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRR 324 (490)
T ss_pred -c-cC---CCCceEEEeceEEEECC---eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEeccc
Confidence 0 00 01224999999999963 3599999999999999999999999999999999999876 69999999987
Q ss_pred cCC-CCHHHHhhceEEEcCCCCCCC---ccHHHHHhcCCC-------CCCH---HHHHHHHHHHhHHHHHHhCCCCcccc
Q 000406 1380 LRE-INVKWLRKQTALVGQEPALFA---GTIRDNIALGNP-------KASW---AEIEEAAEEAYIHKFISSLPQGYETQ 1445 (1560)
Q Consensus 1380 i~~-i~l~~LR~~I~~VpQdp~LF~---gTIreNL~~g~~-------~~sd---~eI~~al~~a~l~~~I~~Lp~Gldt~ 1445 (1560)
+.. .+...+|++|+|+||++.++. .|+++++.++.. .... +++.++++..++.+. .
T Consensus 325 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~ 394 (490)
T PRK10938 325 RGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKR----------T 394 (490)
T ss_pred CCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchh----------h
Confidence 632 233456889999999986642 467777653210 0111 233444444433210 2
Q ss_pred ccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC-C-ceEEEEecChHHHhh--cCEEE
Q 000406 1446 VGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSK-R-ATTIVVAHRLSTIRE--ANMIA 1521 (1560)
Q Consensus 1446 Vge~G~~LSGGQrQRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~-~-~TvI~IAHRlsti~~--aDrIl 1521 (1560)
.......||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|+++.+ + .|||+|||+++.+.. ||+|+
T Consensus 395 ~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~ 474 (490)
T PRK10938 395 ADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLE 474 (490)
T ss_pred ccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEE
Confidence 2333457999999999999999999999999999999999999999999998753 3 469999999999974 79999
Q ss_pred EEeCCEEEEe
Q 000406 1522 VVRDGAVVEY 1531 (1560)
Q Consensus 1522 VLd~G~IvE~ 1531 (1560)
+|++|+|++.
T Consensus 475 ~l~~G~i~~~ 484 (490)
T PRK10938 475 FVPDGDIYRY 484 (490)
T ss_pred EecCCceEEe
Confidence 9999999875
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-66 Score=655.50 Aligned_cols=484 Identities=20% Similarity=0.319 Sum_probs=342.8
Q ss_pred EEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHHHhccEE
Q 000406 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIG 752 (1560)
Q Consensus 673 i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~ 752 (1560)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. .+|+
T Consensus 2 l~i~~ls~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~ 67 (530)
T PRK15064 2 LSTANITMQFGA---KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----------ERLG 67 (530)
T ss_pred EEEEEEEEEeCC---cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEE
Confidence 789999999963 45999999999999999999999999999999999999999999999873 3699
Q ss_pred EEecCCcCccc-cHHHHHhcCCCCC----------------CHH------HHHH-------HHHHhhhHHHHHhCCCCCC
Q 000406 753 MVGQEPILFAT-SILENVLMGKENA----------------TMK------EAVA-------ACKAASAHSFISELPLGYD 802 (1560)
Q Consensus 753 ~v~Q~~~lf~~-Tv~eNi~~g~~~~----------------~~~------~~~~-------~~~~~~~~~~i~~l~~gl~ 802 (1560)
|++|++.++.. |++||+.++.... ... +..+ ......+.+.++.+ |+.
T Consensus 68 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~ 145 (530)
T PRK15064 68 KLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGV--GIP 145 (530)
T ss_pred EEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhC--CCC
Confidence 99999988865 9999998753100 000 0000 00012233455555 554
Q ss_pred ccc-CCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCcccccc-CCEEE
Q 000406 803 TQV-GDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKN-ANTIV 880 (1560)
Q Consensus 803 t~~-~~~g~~LSgGQrQRialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~D~i~ 880 (1560)
... .....+||||||||++|||||+.+|+||||||||++||+.+...+.+.|.+ .+.|||+|||+++.+.. ||+|+
T Consensus 146 ~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~~~tiiivsHd~~~~~~~~d~i~ 223 (530)
T PRK15064 146 EEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMIIISHDRHFLNSVCTHMA 223 (530)
T ss_pred hhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCCeEEEEeCCHHHHHhhcceEE
Confidence 322 345679999999999999999999999999999999999999999999975 47999999999999876 99999
Q ss_pred EEeCCeEE-EecChhhHhhhcchHHHHHHHHHhhccCccccchhcccccchhhhhhhHHHhhhhhhhhhhhhhhhhhhhH
Q 000406 881 VLDQGSVV-EIGNHRQLLERGGAYHDLVKLASEAVSQPQSKQKDAKRGIEFSIYEKSVIEVSRSRYANEVSKSKYFKSMQ 959 (1560)
Q Consensus 881 vl~~G~iv-~~G~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 959 (1560)
+|++|+++ +.|+++++++.......... . . ..
T Consensus 224 ~l~~g~i~~~~g~~~~~~~~~~~~~~~~~-------------~----~------------------------~~------ 256 (530)
T PRK15064 224 DLDYGELRVYPGNYDEYMTAATQARERLL-------------A----D------------------------NA------ 256 (530)
T ss_pred EEeCCEEEEecCCHHHHHHHHHHHHHHHH-------------H----H------------------------HH------
Confidence 99999994 78888876532100000000 0 0 00
Q ss_pred HHhhhhHhhhhCCCCchhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHH
Q 000406 960 AEIQTVEEEQQKPRPRKFQLSEIWKLQRPEFAMIIFGFILGMHAGAILSIFPLILGQALQVYFDDTASTLRRDVRYLSLA 1039 (1560)
Q Consensus 960 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 1039 (1560)
....+ ...+.. +
T Consensus 257 ----~~~~~----------~~~~~~------------------------------------~------------------ 268 (530)
T PRK15064 257 ----KKKAQ----------IAELQS------------------------------------F------------------ 268 (530)
T ss_pred ----HHHHH----------HHHHHH------------------------------------H------------------
Confidence 00000 000000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccCChHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 000406 1040 LVGLGFGCIIFMTGQQGFCGWAGTKLTMRVRELLFRSILKQEPGWFDFEENSTGVLVSRLSIDSISFRSVLGDRFSVLLM 1119 (1560)
Q Consensus 1040 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~ll~~~~~ffd~~~~~~G~il~R~s~Di~~i~~~l~~~l~~~l~ 1119 (1560)
..+ . .. .. ....
T Consensus 269 ----------------------------------~~~---~-----~~--~~---------~~~~--------------- 280 (530)
T PRK15064 269 ----------------------------------VSR---F-----SA--NA---------SKAK--------------- 280 (530)
T ss_pred ----------------------------------HHH---h-----hc--cc---------hhhH---------------
Confidence 000 0 00 00 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHhcchhHHHhccchHHHHHH
Q 000406 1120 GLSSAAVGLGVSLVLNWRLTLVAAALTPFTLGASYLSLIINVGPKIDNSSYAKASSIASGAVSNIRTVTTFSAQEQIINS 1199 (1560)
Q Consensus 1120 ~~~~~i~~l~~~~~~~~~l~lv~l~~ipl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~e~~~~~~ 1199 (1560)
.. ....++
T Consensus 281 ------------------------------------------------~~------------------------~~~~~~ 288 (530)
T PRK15064 281 ------------------------------------------------QA------------------------TSRAKQ 288 (530)
T ss_pred ------------------------------------------------HH------------------------HHHHHH
Confidence 00 000000
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 000406 1200 FDKALSEPKKKSVKRSQILGLTLGFSQGAMYVAYTFTLWFGAYLVKQGHASFGVVYKIFLILVLSSFSVGQLAGLAPDTS 1279 (1560)
Q Consensus 1200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~i~~l~~~~~~~~ 1279 (1560)
+.+.
T Consensus 289 ~~~~---------------------------------------------------------------------------- 292 (530)
T PRK15064 289 IDKI---------------------------------------------------------------------------- 292 (530)
T ss_pred Hhhc----------------------------------------------------------------------------
Confidence 0000
Q ss_pred HHHHHHHHHHHHhccCCccccccccccCCCCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHH
Q 000406 1280 MAATAIPAVLQITKRKPLIDNVKGRKLERSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVI 1359 (1560)
Q Consensus 1280 ~~~~s~~ri~~i~~~~~~~~~~~~~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl 1359 (1560)
+..........................|+++||+++|++ .++|+|+||+|++||++||+||||||||||+
T Consensus 293 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl 362 (530)
T PRK15064 293 -------KLEEVKPSSRQNPFIRFEQDKKLHRNALEVENLTKGFDN---GPLFKNLNLLLEAGERLAIIGENGVGKTTLL 362 (530)
T ss_pred -------cccccCCccccCceeeCCCCCCCCCceEEEEeeEEeeCC---ceeecCcEEEECCCCEEEEECCCCCCHHHHH
Confidence 000000000000000000000011235999999999963 3599999999999999999999999999999
Q ss_pred HHHhcccCCCccEEEECCEecCCCCHHHHhhceEEEcCCCC--CCC-ccHHHHHhcCC-CCCCHHHHHHHHHHHhHH-HH
Q 000406 1360 WLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQEPA--LFA-GTIRDNIALGN-PKASWAEIEEAAEEAYIH-KF 1434 (1560)
Q Consensus 1360 ~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~~I~~VpQdp~--LF~-gTIreNL~~g~-~~~sd~eI~~al~~a~l~-~~ 1434 (1560)
++|+|+++|++|+|.++|. +.++|+||++. ++. .|+++|+.... +...++++.++++..++. +.
T Consensus 363 ~~i~G~~~p~~G~i~~~~~-----------~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 431 (530)
T PRK15064 363 RTLVGELEPDSGTVKWSEN-----------ANIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDD 431 (530)
T ss_pred HHHhCCCCCCCeEEEECCc-----------eEEEEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhH
Confidence 9999999999999999972 57999999974 443 69999997532 222344566666665542 22
Q ss_pred HHhCCCCccccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHHH
Q 000406 1435 ISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTI 1514 (1560)
Q Consensus 1435 I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlsti 1514 (1560)
.......||||||||++|||||+.+|+||||||||++||+.+...+.+.|++. ++|||+|||+++.+
T Consensus 432 -----------~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~ 498 (530)
T PRK15064 432 -----------IKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY--EGTLIFVSHDREFV 498 (530)
T ss_pred -----------hcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC--CCEEEEEeCCHHHH
Confidence 22334579999999999999999999999999999999999999999999986 46999999999998
Q ss_pred hh-cCEEEEEeCCEEE-EecCHHHHHh
Q 000406 1515 RE-ANMIAVVRDGAVV-EYGSHETLLA 1539 (1560)
Q Consensus 1515 ~~-aDrIlVLd~G~Iv-E~Gt~~eLl~ 1539 (1560)
.. ||+|++|++|+++ ..|+++++++
T Consensus 499 ~~~~d~i~~l~~g~i~~~~g~~~~~~~ 525 (530)
T PRK15064 499 SSLATRIIEITPDGVVDFSGTYEEYLR 525 (530)
T ss_pred HHhCCEEEEEECCeEEEcCCCHHHHHH
Confidence 76 9999999999998 7799999886
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-65 Score=592.60 Aligned_cols=534 Identities=24% Similarity=0.336 Sum_probs=454.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 348 LLGCIGALINGGALPWYSYFFGNFVNKIANESSDPDKTQMMKDAEKICLLMTVLAAIVMMGAYLEITCWRLVGERSAQRI 427 (1560)
Q Consensus 348 ~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~l 427 (1560)
.++++.+++ .++....++++-++-|.+....+-. .+.....+.+++.++..++-+++.....+++.++-.++
T Consensus 27 ~v~lfS~~I-NiL~L~~~lyMLQVyDRVL~S~s~~-------TLv~Ltvlal~ly~~~glLd~iR~~~l~Rig~~lD~~L 98 (580)
T COG4618 27 GVGLFSAVI-NLLALTGPLYMLQVYDRVLPSRSVP-------TLVMLTVLALGLYAFQGLLDAIRSRVLVRIGERLDRQL 98 (580)
T ss_pred HHHHHHHHH-HHHHHhhhHHHHHHHhhhccCCCcc-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344443433 3446666777778888877543211 12223333344445555666778888888999999999
Q ss_pred HHHHHHHHHhcCchhhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 428 RTKYLRAVLRQDIAFFDTEVSTSDIMHGISSDIAQIQEVMGEKVAHFAHNIFTFICGYTVGFLRSWKVSLVVLSVTPLMM 507 (1560)
Q Consensus 428 r~~l~~~ll~~~l~ffd~~~~~G~i~~r~s~Dv~~i~~~l~~~l~~~i~~i~~~i~~~ii~~~~s~~l~lv~l~~~pl~~ 507 (1560)
...+|++.++.++.--. .|+=.+-+ +|.++++.+++..-...+.+.-.+.+.++++|.+++++.++.++...+++
T Consensus 99 ~~~v~~a~~~~~l~~~~----~g~~~Q~L-rDL~qvR~Fltg~g~~A~fDaPW~P~yl~v~fl~Hp~lG~~a~~ga~iLv 173 (580)
T COG4618 99 NGPVFAASFSAPLLRRG----SGDGLQPL-RDLDQVRQFLTGTGLTAFFDAPWMPLYLAVIFLFHPWLGLIALAGAIILV 173 (580)
T ss_pred ccHHHHHHHhhHHhhcC----CCccccch-hhHHHHHHHHcCCCcchhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888776542 23222323 79999999999877777777777777888999999999998888777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHhHhHHHhHHHHHHHHHHHHHHHHH
Q 000406 508 FCGMAYKAVYVGLTSKEEASYRRAGSVAEQAISSIRTVFSFVAEDHFAVRYAGLLADSIPFGAKLGFAKGAGMGVIYLVT 587 (1560)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIka~~~e~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~ 587 (1560)
.+..+-.+..++-.++..+...+.+.+..-+..|.++|+++|+.....++|.+....+.....+..-..+....+.-.+-
T Consensus 174 ~la~ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~~Sr~~R 253 (580)
T COG4618 174 VLALLNERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFGALSRALR 253 (580)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 66666666566666666667777888899999999999999999999999999999888888887777777788888888
Q ss_pred HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCcCC
Q 000406 588 YATWALAFWYGSILVARKELSGGAAIACFFGVNVGGRGLALSLSYFAQFAQGTVAATRVFEIIDRVPEIDPYNSEGRKLS 667 (1560)
Q Consensus 588 ~~~~~~~~~~g~~lv~~g~ls~g~~~~~l~~~~~~~~~l~~~~~~~~~~~~a~~a~~Ri~~~l~~~~~~~~~~~~~~~~~ 667 (1560)
.++...++.+|++++++|++|+|.+++....+...-.|+...+..|.++..+..|.+|+.+++...|+.. ..-..|
T Consensus 254 m~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~----~~m~LP 329 (580)
T COG4618 254 MALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAA----ERMPLP 329 (580)
T ss_pred HHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc----CCCCCC
Confidence 8888889999999999999999999998777766667888999999999999999999999998766532 223456
Q ss_pred CCcccEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHHH
Q 000406 668 SVSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWL 747 (1560)
Q Consensus 668 ~~~g~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~l 747 (1560)
.++|.+.++++++.-|+. ++++|++|||++++||.++||||||||||||.++|.|.++|++|.|.+||-|+++++.+.+
T Consensus 330 ~P~g~L~Ve~l~~~PPg~-~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~l 408 (580)
T COG4618 330 APQGALSVERLTAAPPGQ-KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQL 408 (580)
T ss_pred CCCceeeEeeeeecCCCC-CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHh
Confidence 678999999999987654 5789999999999999999999999999999999999999999999999999999999999
Q ss_pred hccEEEEecCCcCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHHhc
Q 000406 748 RTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMI 827 (1560)
Q Consensus 748 r~~i~~v~Q~~~lf~~Tv~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARAl~ 827 (1560)
-++|||.||+..||+|||+|||+-..++.+.+.+.+|++.+++||.|..+|+||||.+|+.|..|||||||||+||||||
T Consensus 409 G~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlY 488 (580)
T COG4618 409 GRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALY 488 (580)
T ss_pred ccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHc
Confidence 99999999999999999999998877778889999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCccccccCCEEEEEeCCeEEEecChhhHhhh
Q 000406 828 KDPRILLLDEPTSALDSESESIVQQAIDKIS-VGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLER 899 (1560)
Q Consensus 828 ~~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~~D~i~vl~~G~iv~~G~~~~l~~~ 899 (1560)
.+|.+++||||-|+||.+.|..+.++|...+ +|.|+|+||||++.+..+|+|+||++|++...|+-+|++++
T Consensus 489 G~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 489 GDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred CCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHHHH
Confidence 9999999999999999999999999998874 69999999999999999999999999999999999998763
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-64 Score=638.71 Aligned_cols=482 Identities=23% Similarity=0.329 Sum_probs=337.0
Q ss_pred cEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHHHhccE
Q 000406 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQI 751 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 751 (1560)
.|+++|++++|+. +.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. .+|
T Consensus 6 ~l~i~~l~~~y~~--~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~-----------~~i 72 (556)
T PRK11819 6 IYTMNRVSKVVPP--KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPG-----------IKV 72 (556)
T ss_pred EEEEeeEEEEeCC--CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEE
Confidence 5899999999962 246999999999999999999999999999999999999999999999751 469
Q ss_pred EEEecCCcCccc-cHHHHHhcCCCCC----------------C----------HHHHHHHHH-------HhhhHHHHHhC
Q 000406 752 GMVGQEPILFAT-SILENVLMGKENA----------------T----------MKEAVAACK-------AASAHSFISEL 797 (1560)
Q Consensus 752 ~~v~Q~~~lf~~-Tv~eNi~~g~~~~----------------~----------~~~~~~~~~-------~~~~~~~i~~l 797 (1560)
+||+|+|.+++. |++||+.++.... . ..++.+.+. ...+.+.+..+
T Consensus 73 ~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 152 (556)
T PRK11819 73 GYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDAL 152 (556)
T ss_pred EEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhC
Confidence 999999999876 9999998753100 0 000111111 11223344444
Q ss_pred CCCCCcccCCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCcccccc-C
Q 000406 798 PLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKN-A 876 (1560)
Q Consensus 798 ~~gl~t~~~~~g~~LSgGQrQRialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~ 876 (1560)
|++ .......+|||||||||+|||||+.+|++|||||||++||+.+...+.+.|+++. .|+|+|||+++.+.. |
T Consensus 153 --gl~-~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~--~tviiisHd~~~~~~~~ 227 (556)
T PRK11819 153 --RCP-PWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP--GTVVAVTHDRYFLDNVA 227 (556)
T ss_pred --CCC-cccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC--CeEEEEeCCHHHHHhhc
Confidence 443 2466678999999999999999999999999999999999999999999998874 599999999999976 9
Q ss_pred CEEEEEeCCeEE-EecChhhHhhhcchHHHHHHHHHhhccCccccchhcccccchhhhhhhHHHhhhhhhhhhhhhhhhh
Q 000406 877 NTIVVLDQGSVV-EIGNHRQLLERGGAYHDLVKLASEAVSQPQSKQKDAKRGIEFSIYEKSVIEVSRSRYANEVSKSKYF 955 (1560)
Q Consensus 877 D~i~vl~~G~iv-~~G~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 955 (1560)
|+|++|++|+++ ..|+++++.+.... .. ... . .
T Consensus 228 d~i~~l~~g~i~~~~g~~~~~~~~~~~--~~-~~~-------------~-----------------~------------- 261 (556)
T PRK11819 228 GWILELDRGRGIPWEGNYSSWLEQKAK--RL-AQE-------------E-----------------K------------- 261 (556)
T ss_pred CeEEEEeCCEEEEecCCHHHHHHHHHH--HH-HHH-------------H-----------------H-------------
Confidence 999999999986 67887765432100 00 000 0 0
Q ss_pred hhhHHHhhhhHhhhhCCCCchhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhHHH
Q 000406 956 KSMQAEIQTVEEEQQKPRPRKFQLSEIWKLQRPEFAMIIFGFILGMHAGAILSIFPLILGQALQVYFDDTASTLRRDVRY 1035 (1560)
Q Consensus 956 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 1035 (1560)
..+..+. ....... +.
T Consensus 262 --------~~~~~~~-------~~~~~~~------------------------------------~~------------- 277 (556)
T PRK11819 262 --------QEAARQK-------ALKRELE------------------------------------WV------------- 277 (556)
T ss_pred --------HHHHHHH-------HHHHHHH------------------------------------HH-------------
Confidence 0000000 0000000 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccCChHHHHHHHhhhHHHHHHHHHHHHH
Q 000406 1036 LSLALVGLGFGCIIFMTGQQGFCGWAGTKLTMRVRELLFRSILKQEPGWFDFEENSTGVLVSRLSIDSISFRSVLGDRFS 1115 (1560)
Q Consensus 1036 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~ll~~~~~ffd~~~~~~G~il~R~s~Di~~i~~~l~~~l~ 1115 (1560)
. +.+.+ +
T Consensus 278 --------------------------------------------------~--~~~~~----~----------------- 284 (556)
T PRK11819 278 --------------------------------------------------R--QSPKA----R----------------- 284 (556)
T ss_pred --------------------------------------------------H--Hhhhh----h-----------------
Confidence 0 00000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHhcchhHHHhccchHH
Q 000406 1116 VLLMGLSSAAVGLGVSLVLNWRLTLVAAALTPFTLGASYLSLIINVGPKIDNSSYAKASSIASGAVSNIRTVTTFSAQEQ 1195 (1560)
Q Consensus 1116 ~~l~~~~~~i~~l~~~~~~~~~l~lv~l~~ipl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~e~~ 1195 (1560)
. .+. ..
T Consensus 285 ---------------------------------------------~-~~~----------------------------~~ 290 (556)
T PRK11819 285 ---------------------------------------------Q-AKS----------------------------KA 290 (556)
T ss_pred ---------------------------------------------H-HHH----------------------------HH
Confidence 0 000 00
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHhhH
Q 000406 1196 IINSFDKALSEPKKKSVKRSQILGLTLGFSQGAMYVAYTFTLWFGAYLVKQGHASFGVVYKIFLILVLSSFSVGQLAGLA 1275 (1560)
Q Consensus 1196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~i~~l~~~~ 1275 (1560)
..+++
T Consensus 291 ~~~~~--------------------------------------------------------------------------- 295 (556)
T PRK11819 291 RLARY--------------------------------------------------------------------------- 295 (556)
T ss_pred HHHHH---------------------------------------------------------------------------
Confidence 00000
Q ss_pred HHHHHHHHHHHHHHHHh-ccCCccccccccccCCCCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCC
Q 000406 1276 PDTSMAATAIPAVLQIT-KRKPLIDNVKGRKLERSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSG 1354 (1560)
Q Consensus 1276 ~~~~~~~~s~~ri~~i~-~~~~~~~~~~~~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSG 1354 (1560)
++..+.. ...+..........+.....-|+++||+++|++ .++|+||||+|++||++||+|+||||
T Consensus 296 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsG 362 (556)
T PRK11819 296 ----------EELLSEEYQKRNETNEIFIPPGPRLGDKVIEAENLSKSFGD---RLLIDDLSFSLPPGGIVGIIGPNGAG 362 (556)
T ss_pred ----------HHhhcccccccCCCceeecCCCCCCCCeEEEEEeEEEEECC---eeeecceeEEEcCCCEEEEECCCCCC
Confidence 0000000 000000000000000111235999999999963 35999999999999999999999999
Q ss_pred HHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhhceEEEcCCC-CCCC-ccHHHHHhcCCCC----CCHHHHHHHHHH
Q 000406 1355 KSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQEP-ALFA-GTIRDNIALGNPK----ASWAEIEEAAEE 1428 (1560)
Q Consensus 1355 KSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~~I~~VpQdp-~LF~-gTIreNL~~g~~~----~sd~eI~~al~~ 1428 (1560)
||||+++|+|+++|++|+|.+++ ++ .|+|+||++ .++. .|++||+.++... ..+.+..++++.
T Consensus 363 KSTLl~~i~G~~~p~~G~i~~~~-~~----------~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~ 431 (556)
T PRK11819 363 KSTLFKMITGQEQPDSGTIKIGE-TV----------KLAYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGR 431 (556)
T ss_pred HHHHHHHHhCCCCCCCeEEEECC-ce----------EEEEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHh
Confidence 99999999999999999999964 21 599999997 5654 5999999875311 112222333333
Q ss_pred HhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEe
Q 000406 1429 AYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVA 1508 (1560)
Q Consensus 1429 a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IA 1508 (1560)
.++. . .........||||||||++|||||+.+|+||||||||++||+.+...+.+.|++. . .|+|+||
T Consensus 432 ~~l~-------~---~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~-~tvi~vt 499 (556)
T PRK11819 432 FNFK-------G---GDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEF-P-GCAVVIS 499 (556)
T ss_pred CCCC-------h---hHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC-C-CeEEEEE
Confidence 2221 0 1123334579999999999999999999999999999999999999999999986 3 4899999
Q ss_pred cChHHHhh-cCEEEEEeC-CEEEE-ecCHHHHHh
Q 000406 1509 HRLSTIRE-ANMIAVVRD-GAVVE-YGSHETLLA 1539 (1560)
Q Consensus 1509 HRlsti~~-aDrIlVLd~-G~IvE-~Gt~~eLl~ 1539 (1560)
|+++.+.. ||+|++|++ |++.+ .|+++++++
T Consensus 500 Hd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~ 533 (556)
T PRK11819 500 HDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEE 533 (556)
T ss_pred CCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHH
Confidence 99999876 999999996 88875 588888876
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-64 Score=635.85 Aligned_cols=481 Identities=24% Similarity=0.345 Sum_probs=335.8
Q ss_pred cEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHHHhccE
Q 000406 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQI 751 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 751 (1560)
.|+++|++++|+. ++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+++ +.+|
T Consensus 4 ~i~~~nls~~~~~--~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i 70 (552)
T TIGR03719 4 IYTMNRVSKVVPP--KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-----------GIKV 70 (552)
T ss_pred EEEEeeEEEecCC--CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEE
Confidence 4899999999962 24699999999999999999999999999999999999999999999975 2469
Q ss_pred EEEecCCcCccc-cHHHHHhcCCCC-----------------CCH---------HHHHHHHHHhh-------hHHHHHhC
Q 000406 752 GMVGQEPILFAT-SILENVLMGKEN-----------------ATM---------KEAVAACKAAS-------AHSFISEL 797 (1560)
Q Consensus 752 ~~v~Q~~~lf~~-Tv~eNi~~g~~~-----------------~~~---------~~~~~~~~~~~-------~~~~i~~l 797 (1560)
+||+|+|.+++. |++|||.++... ... .++.++++..+ +.+.+..+
T Consensus 71 ~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 150 (552)
T TIGR03719 71 GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL 150 (552)
T ss_pred EEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhC
Confidence 999999998865 999999875311 000 11122222221 22334443
Q ss_pred CCCCCcccCCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCcccccc-C
Q 000406 798 PLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKN-A 876 (1560)
Q Consensus 798 ~~gl~t~~~~~g~~LSgGQrQRialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~ 876 (1560)
|++. .+....+||||||||++|||||+.+|++|||||||++||+.+...+.+.|++. +.|+|+|||+++.+.. |
T Consensus 151 --~l~~-~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~--~~tvIiisHd~~~~~~~~ 225 (552)
T TIGR03719 151 --RCPP-WDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY--PGTVVAVTHDRYFLDNVA 225 (552)
T ss_pred --CCCc-ccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhc
Confidence 4422 35667899999999999999999999999999999999999999999999876 3699999999999976 9
Q ss_pred CEEEEEeCCeEE-EecChhhHhhhcchHHHHHHHHHhhccCccccchhcccccchhhhhhhHHHhhhhhhhhhhhhhhhh
Q 000406 877 NTIVVLDQGSVV-EIGNHRQLLERGGAYHDLVKLASEAVSQPQSKQKDAKRGIEFSIYEKSVIEVSRSRYANEVSKSKYF 955 (1560)
Q Consensus 877 D~i~vl~~G~iv-~~G~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 955 (1560)
|+|++|++|+++ ..|+++++++... ...... . .. ..+
T Consensus 226 d~v~~l~~g~i~~~~g~~~~~~~~~~---~~~~~~-------------~-----------------~~-------~~~-- 263 (552)
T TIGR03719 226 GWILELDRGRGIPWEGNYSSWLEQKE---KRLEQE-------------E-----------------KE-------ESA-- 263 (552)
T ss_pred CeEEEEECCEEEEecCCHHHHHHHHH---HHHHHH-------------H-----------------HH-------HHH--
Confidence 999999999976 6688777653110 000000 0 00 000
Q ss_pred hhhHHHhhhhHhhhhCCCCchhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhHHH
Q 000406 956 KSMQAEIQTVEEEQQKPRPRKFQLSEIWKLQRPEFAMIIFGFILGMHAGAILSIFPLILGQALQVYFDDTASTLRRDVRY 1035 (1560)
Q Consensus 956 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 1035 (1560)
. +.+ ...... +
T Consensus 264 --~-------~~~----------~~~~~~------------------------------------~-------------- 274 (552)
T TIGR03719 264 --R-------QKA----------LKRELE------------------------------------W-------------- 274 (552)
T ss_pred --H-------HHH----------HHHHHH------------------------------------H--------------
Confidence 0 000 000000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccCChHHHHHHHhhhHHHHHHHHHHHHH
Q 000406 1036 LSLALVGLGFGCIIFMTGQQGFCGWAGTKLTMRVRELLFRSILKQEPGWFDFEENSTGVLVSRLSIDSISFRSVLGDRFS 1115 (1560)
Q Consensus 1036 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~ll~~~~~ffd~~~~~~G~il~R~s~Di~~i~~~l~~~l~ 1115 (1560)
++. . +.+. +
T Consensus 275 ---------------------------------~~~--------~----------~~~~---~----------------- 283 (552)
T TIGR03719 275 ---------------------------------VRS--------S----------PKAR---Q----------------- 283 (552)
T ss_pred ---------------------------------HHh--------h----------hhhH---H-----------------
Confidence 000 0 0000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHhcchhHHHhccchHH
Q 000406 1116 VLLMGLSSAAVGLGVSLVLNWRLTLVAAALTPFTLGASYLSLIINVGPKIDNSSYAKASSIASGAVSNIRTVTTFSAQEQ 1195 (1560)
Q Consensus 1116 ~~l~~~~~~i~~l~~~~~~~~~l~lv~l~~ipl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~e~~ 1195 (1560)
. .. ..
T Consensus 284 -----------------------------------------------------~--~~--------------------~~ 288 (552)
T TIGR03719 284 -----------------------------------------------------A--KS--------------------KA 288 (552)
T ss_pred -----------------------------------------------------H--HH--------------------HH
Confidence 0 00 00
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHhhH
Q 000406 1196 IINSFDKALSEPKKKSVKRSQILGLTLGFSQGAMYVAYTFTLWFGAYLVKQGHASFGVVYKIFLILVLSSFSVGQLAGLA 1275 (1560)
Q Consensus 1196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~i~~l~~~~ 1275 (1560)
...++
T Consensus 289 ~~~~~--------------------------------------------------------------------------- 293 (552)
T TIGR03719 289 RLARY--------------------------------------------------------------------------- 293 (552)
T ss_pred HHHHH---------------------------------------------------------------------------
Confidence 00000
Q ss_pred HHHHHHHHHHHHHHHH-hccCCccccccccccCCCCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCC
Q 000406 1276 PDTSMAATAIPAVLQI-TKRKPLIDNVKGRKLERSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSG 1354 (1560)
Q Consensus 1276 ~~~~~~~~s~~ri~~i-~~~~~~~~~~~~~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSG 1354 (1560)
++..+. ....++...............-++++||+++|+. .++|+||||+|++||++||+|+||||
T Consensus 294 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsG 360 (552)
T TIGR03719 294 ----------EELLSQEFQKRNETAEIYIPPGPRLGDKVIEAENLSKGFGD---KLLIDDLSFKLPPGGIVGVIGPNGAG 360 (552)
T ss_pred ----------HhhhhhcccccCCCceeecCCCCCCCCeEEEEeeEEEEECC---eeeeccceEEEcCCCEEEEECCCCCC
Confidence 000000 0000000000000000011225999999999963 35999999999999999999999999
Q ss_pred HHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhhceEEEcCCCC-CCC-ccHHHHHhcCCCC--CC--HHHHHHHHHH
Q 000406 1355 KSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQEPA-LFA-GTIRDNIALGNPK--AS--WAEIEEAAEE 1428 (1560)
Q Consensus 1355 KSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~~I~~VpQdp~-LF~-gTIreNL~~g~~~--~s--d~eI~~al~~ 1428 (1560)
||||+++|+|+++|++|+|.+++ ++ .|+|+||++. ++. .|++||+.++... .. +.+..++++.
T Consensus 361 KSTLl~~l~G~~~p~~G~i~~~~-~~----------~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~ 429 (552)
T TIGR03719 361 KSTLFRMITGQEQPDSGTIKIGE-TV----------KLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGR 429 (552)
T ss_pred HHHHHHHHcCCCCCCCeEEEECC-ce----------EEEEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHh
Confidence 99999999999999999999964 21 6999999973 554 5999999875321 11 1222223332
Q ss_pred HhHHHHHHhCCCCccc-cccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEE
Q 000406 1429 AYIHKFISSLPQGYET-QVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVV 1507 (1560)
Q Consensus 1429 a~l~~~I~~Lp~Gldt-~Vge~G~~LSGGQrQRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~I 1507 (1560)
. |++. ........||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|++.. +|||+|
T Consensus 430 ~-----------~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~viiv 496 (552)
T TIGR03719 430 F-----------NFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA--GCAVVI 496 (552)
T ss_pred C-----------CCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--CeEEEE
Confidence 2 2321 1233345799999999999999999999999999999999999999999999873 589999
Q ss_pred ecChHHHhh-cCEEEEEeC-CEEEEe-cCHHHHHh
Q 000406 1508 AHRLSTIRE-ANMIAVVRD-GAVVEY-GSHETLLA 1539 (1560)
Q Consensus 1508 AHRlsti~~-aDrIlVLd~-G~IvE~-Gt~~eLl~ 1539 (1560)
||+++.+.. ||+|++|++ |+++++ |+++++.+
T Consensus 497 sHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~ 531 (552)
T TIGR03719 497 SHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEE 531 (552)
T ss_pred eCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHH
Confidence 999999876 999999997 688754 88887765
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-62 Score=625.84 Aligned_cols=527 Identities=18% Similarity=0.191 Sum_probs=390.5
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 983 WKLQRPEFAMIIFGFILGMHAGAILSIF-PLILGQALQVYFDDTASTLRRDVRYLSLALVGLGFGCIIFMTGQQGFCGWA 1061 (1560)
Q Consensus 983 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 1061 (1560)
+++.++.++.++++++++++..++.... |++...+++... .. .... ..++++.++..++.++..++..++
T Consensus 5 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~----~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 75 (547)
T PRK10522 5 RLVWRQYRWPFISVMALSLASAALGIGLIAFINQRLIETAD----TS-LLVL----PEFLGLLLLLMAVTLGSQLALTTL 75 (547)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc----cc-chHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666555554443 344344443221 10 0001 111222222344566777888889
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCcccccCChHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 1062 GTKLTMRVRELLFRSILKQEPGWFDFEENSTGVLVSRLSIDSISFRSVLGDRFSVLLMGLSSAAVGLGVSLVLNWRLTLV 1141 (1560)
Q Consensus 1062 ~~~~~~~Lr~~l~~~ll~~~~~ffd~~~~~~G~il~R~s~Di~~i~~~l~~~l~~~l~~~~~~i~~l~~~~~~~~~l~lv 1141 (1560)
+.++..++|..++++++++|+.||+ ++++|++++|+++|++.+...+. .++.++.+++..+++++++++++|.++++
T Consensus 76 ~~~~~~~lR~~l~~~ll~~~~~~~~--~~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~~~~~l~~~~~~l~li 152 (547)
T PRK10522 76 GHHFVYRLRSEFIKRILDTHVERIE--QLGSASLLASLTSDVRNITIAFV-RLPELVQGIILTLGSAAYLAWLSPKMLLV 152 (547)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHh--ccCccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 9999999999999999999999987 78999999999999999998765 47778888888899999999999999999
Q ss_pred HHHHHHHHHHHHHH-HHHHhcchhhhhhhHHHHHHHHHHHhcchhHHHhccch---HHHHHHHHHHHhhhHHHHHHHHHH
Q 000406 1142 AAALTPFTLGASYL-SLIINVGPKIDNSSYAKASSIASGAVSNIRTVTTFSAQ---EQIINSFDKALSEPKKKSVKRSQI 1217 (1560)
Q Consensus 1142 ~l~~ipl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~e---~~~~~~~~~~~~~~~~~~~~~~~~ 1217 (1560)
+++++|+.++..++ ........+..++...+..+.+.|.+.|+++++ ++.+ +.+.+++++..++..+...+....
T Consensus 153 ~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (547)
T PRK10522 153 TAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDAQEYRHHIIRADTF 231 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHHHHHHhhhHHHHHH
Confidence 88888877655443 333333333335667788899999999999995 4443 456788888777776665555444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccCCc
Q 000406 1218 LGLTLGFSQGAMYVAYTFTLWFGAYLVKQGHASFGVVYKIFLILVLSSFSVGQLAGLAPDTSMAATAIPAVLQITKRKPL 1297 (1560)
Q Consensus 1218 ~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~s~~ri~~i~~~~~~ 1297 (1560)
......+...+..+...+.++++... ..+ +.+.+..+..+......|+..+...+..+..+..+.+|+.++.+.+++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~ 308 (547)
T PRK10522 232 HLSAVNWSNIMMLGAIGLVFYMANSL-GWA--DTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYK 308 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-hcC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 43333333222222222222333222 112 233333333333345578999999999999999999999998754332
Q ss_pred cccccccccCCCCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECC
Q 000406 1298 IDNVKGRKLERSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEG 1377 (1560)
Q Consensus 1298 ~~~~~~~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdG 1377 (1560)
.+.... ...+..+.|+++||+|+|+++ .++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.+||
T Consensus 309 ~~~~~~--~~~~~~~~i~~~~v~f~y~~~--~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g 384 (547)
T PRK10522 309 AEFPRP--QAFPDWQTLELRNVTFAYQDN--GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDG 384 (547)
T ss_pred cccccc--cccCcCceEEEEEEEEEeCCC--CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC
Confidence 211111 111112469999999999742 4699999999999999999999999999999999999999999999999
Q ss_pred EecCCCCHHHHhhceEEEcCCCCCCCccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHH
Q 000406 1378 VDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQ 1457 (1560)
Q Consensus 1378 vdi~~i~l~~LR~~I~~VpQdp~LF~gTIreNL~~g~~~~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQ 1457 (1560)
+|+++++.+.+|++++||||||++|++|+++| .+..++++++++++.+++.+++.. ++|. .+|.+|||||
T Consensus 385 ~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n----~~~~~~~~~~~~~~~~~l~~~~~~-~~~~-----~~G~~LSgGq 454 (547)
T PRK10522 385 KPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE----GKPANPALVEKWLERLKMAHKLEL-EDGR-----ISNLKLSKGQ 454 (547)
T ss_pred EECCCCCHHHHhhheEEEecChhHHHHhhccc----cCchHHHHHHHHHHHcCCchhhhc-cccC-----CCCCCCCHHH
Confidence 99999999999999999999999999999999 245677888888888777665542 3332 1478999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc--CCceEEEEecChHHHhhcCEEEEEeCCEEEEe-cCH
Q 000406 1458 KQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVS--KRATTIVVAHRLSTIREANMIAVVRDGAVVEY-GSH 1534 (1560)
Q Consensus 1458 rQRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~--~~~TvI~IAHRlsti~~aDrIlVLd~G~IvE~-Gt~ 1534 (1560)
||||+||||++++|+|||||||||+||+++|+.|.+.|.+.. +++|+|+||||++++..||+|++|++|+++|. |++
T Consensus 455 ~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~~~~~ 534 (547)
T PRK10522 455 KKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSELTGEE 534 (547)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEecCCc
Confidence 999999999999999999999999999999999999997654 47999999999999999999999999999998 666
Q ss_pred HHHHh
Q 000406 1535 ETLLA 1539 (1560)
Q Consensus 1535 ~eLl~ 1539 (1560)
.+-+.
T Consensus 535 ~~~~~ 539 (547)
T PRK10522 535 RDAAS 539 (547)
T ss_pred hhhhh
Confidence 55443
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-62 Score=666.60 Aligned_cols=214 Identities=21% Similarity=0.337 Sum_probs=176.4
Q ss_pred ccEEEEEEEEEcCCC----------CCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCC--CccEEEECCEe
Q 000406 1312 LGIELKMVTFTYPSR----------PEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDP--NQGKVMIEGVD 1379 (1560)
Q Consensus 1312 ~~I~~~nVsf~Y~~~----------~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p--~~G~I~IdGvd 1379 (1560)
..+.++||++..+.. ....+|+|||++|+|||.+||+||||||||||+++|+|..++ .+|+|.+||.+
T Consensus 866 ~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~ 945 (1470)
T PLN03140 866 LAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFP 945 (1470)
T ss_pred ceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCcc
Confidence 369999999997532 123699999999999999999999999999999999999873 68999999988
Q ss_pred cCCCCHHHHhhceEEEcCCCCCCC-ccHHHHHhcCC----C-CCCHHH----HHHHHHHHhHHHHHHhCCCCccccccCC
Q 000406 1380 LREINVKWLRKQTALVGQEPALFA-GTIRDNIALGN----P-KASWAE----IEEAAEEAYIHKFISSLPQGYETQVGES 1449 (1560)
Q Consensus 1380 i~~i~l~~LR~~I~~VpQdp~LF~-gTIreNL~~g~----~-~~sd~e----I~~al~~a~l~~~I~~Lp~Gldt~Vge~ 1449 (1560)
+. ...+|+.++||+|++.++. .||+|||.+.. | ..+.++ +.++++..++.+ -.|+.+|..
T Consensus 946 ~~---~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~-------~~~~~vg~~ 1015 (1470)
T PLN03140 946 KK---QETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDN-------LKDAIVGLP 1015 (1470)
T ss_pred CC---hHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChh-------HhCCccCCC
Confidence 64 3456788999999987776 59999998641 1 223332 445555555433 346777754
Q ss_pred C-CCCChHHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCceEEEEecChHH-H-hhcCEEEEEeC
Q 000406 1450 G-VQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVS-KRATTIVVAHRLST-I-REANMIAVVRD 1525 (1560)
Q Consensus 1450 G-~~LSGGQrQRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~-~~~TvI~IAHRlst-i-~~aDrIlVLd~ 1525 (1560)
+ ..||||||||++|||||+.+|+||+||||||+||+.+...|.+.|+++. +++|||+++|+++. + ..+|++++|++
T Consensus 1016 ~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~ 1095 (1470)
T PLN03140 1016 GVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKR 1095 (1470)
T ss_pred CCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcC
Confidence 4 5799999999999999999999999999999999999999999999874 46899999999984 4 56999999996
Q ss_pred -CEEEEecCHH
Q 000406 1526 -GAVVEYGSHE 1535 (1560)
Q Consensus 1526 -G~IvE~Gt~~ 1535 (1560)
|+++.+|++.
T Consensus 1096 gG~~v~~G~~~ 1106 (1470)
T PLN03140 1096 GGQVIYSGPLG 1106 (1470)
T ss_pred CCEEEEECCcc
Confidence 8999999863
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-63 Score=634.86 Aligned_cols=481 Identities=25% Similarity=0.337 Sum_probs=331.3
Q ss_pred EEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHHHhccEE
Q 000406 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIG 752 (1560)
Q Consensus 673 i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~ 752 (1560)
|+++||+++|++ ..+|+||||+|++|+++||+||||||||||+++|+|+++|++|+|.++|. ..|+
T Consensus 2 i~i~nls~~~g~---~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~-----------~~i~ 67 (638)
T PRK10636 2 IVFSSLQIRRGV---RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGN-----------WQLA 67 (638)
T ss_pred EEEEEEEEEeCC---ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEE
Confidence 789999999964 45999999999999999999999999999999999999999999999884 2489
Q ss_pred EEecCCcCccccHHHHHhcCCCCC---C-----------HHHH---HHHH-------HHhhhHHHHHhCCCCCC-cccCC
Q 000406 753 MVGQEPILFATSILENVLMGKENA---T-----------MKEA---VAAC-------KAASAHSFISELPLGYD-TQVGD 807 (1560)
Q Consensus 753 ~v~Q~~~lf~~Tv~eNi~~g~~~~---~-----------~~~~---~~~~-------~~~~~~~~i~~l~~gl~-t~~~~ 807 (1560)
|++|++..+..|+.+.+.-+.... + .... .... ....+.+.+..+ |+. .....
T Consensus 68 ~~~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l--gl~~~~~~~ 145 (638)
T PRK10636 68 WVNQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGL--GFSNEQLER 145 (638)
T ss_pred EEecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhC--CCCchhhcC
Confidence 999976545556666554221000 0 0000 0000 011233445554 553 34566
Q ss_pred CCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCcccccc-CCEEEEEeCCe
Q 000406 808 RGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKN-ANTIVVLDQGS 886 (1560)
Q Consensus 808 ~g~~LSgGQrQRialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~D~i~vl~~G~ 886 (1560)
...+|||||||||+|||||+.+|+||||||||++||+.+..++.+.|++. +.|||+|||+++++.. ||+|++|++|+
T Consensus 146 ~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~--~~tviivsHd~~~l~~~~d~i~~L~~G~ 223 (638)
T PRK10636 146 PVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY--QGTLILISHDRDFLDPIVDKIIHIEQQS 223 (638)
T ss_pred chhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHhcCEEEEEeCCE
Confidence 77899999999999999999999999999999999999999999999876 4799999999999976 99999999999
Q ss_pred EEE-ecChhhHhhhcchHHHHHHHHHhhccCccccchhcccccchhhhhhhHHHhhhhhhhhhhhhhhhhhhhHHHhhhh
Q 000406 887 VVE-IGNHRQLLERGGAYHDLVKLASEAVSQPQSKQKDAKRGIEFSIYEKSVIEVSRSRYANEVSKSKYFKSMQAEIQTV 965 (1560)
Q Consensus 887 iv~-~G~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 965 (1560)
++. .|+++........ ....+. ..+ .....+
T Consensus 224 i~~~~g~~~~~~~~~~~---~~~~~~----------------------------------------~~~-~~~~~~---- 255 (638)
T PRK10636 224 LFEYTGNYSSFEVQRAT---RLAQQQ----------------------------------------AMY-ESQQER---- 255 (638)
T ss_pred EEEecCCHHHHHHHHHH---HHHHHH----------------------------------------HHH-HHHHHH----
Confidence 964 5666654321000 000000 000 000000
Q ss_pred HhhhhCCCCchhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Q 000406 966 EEEQQKPRPRKFQLSEIWKLQRPEFAMIIFGFILGMHAGAILSIFPLILGQALQVYFDDTASTLRRDVRYLSLALVGLGF 1045 (1560)
Q Consensus 966 ~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 1045 (1560)
+..... +
T Consensus 256 -------------~~~~~~------------------------------------~------------------------ 262 (638)
T PRK10636 256 -------------VAHLQS------------------------------------Y------------------------ 262 (638)
T ss_pred -------------HHHHHH------------------------------------H------------------------
Confidence 000000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccCChHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 1046 GCIIFMTGQQGFCGWAGTKLTMRVRELLFRSILKQEPGWFDFEENSTGVLVSRLSIDSISFRSVLGDRFSVLLMGLSSAA 1125 (1560)
Q Consensus 1046 ~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~ll~~~~~ffd~~~~~~G~il~R~s~Di~~i~~~l~~~l~~~l~~~~~~i 1125 (1560)
+.|+.
T Consensus 263 --------------------------------------------------i~r~~------------------------- 267 (638)
T PRK10636 263 --------------------------------------------------IDRFR------------------------- 267 (638)
T ss_pred --------------------------------------------------HHHhh-------------------------
Confidence 00000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHhcchhHHHhccchHHHHHHHHHHHh
Q 000406 1126 VGLGVSLVLNWRLTLVAAALTPFTLGASYLSLIINVGPKIDNSSYAKASSIASGAVSNIRTVTTFSAQEQIINSFDKALS 1205 (1560)
Q Consensus 1126 ~~l~~~~~~~~~l~lv~l~~ipl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~e~~~~~~~~~~~~ 1205 (1560)
.. .+..... + ...+
T Consensus 268 ----------------------------------~~-a~~~~~a-----------------------~-~r~~------- 281 (638)
T PRK10636 268 ----------------------------------AK-ATKAKQA-----------------------Q-SRIK------- 281 (638)
T ss_pred ----------------------------------hh-hhhHHHH-----------------------H-HHHH-------
Confidence 00 0000000 0 0000
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 000406 1206 EPKKKSVKRSQILGLTLGFSQGAMYVAYTFTLWFGAYLVKQGHASFGVVYKIFLILVLSSFSVGQLAGLAPDTSMAATAI 1285 (1560)
Q Consensus 1206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~s~ 1285 (1560)
.+
T Consensus 282 ------------------------------------------------------------------------------~l 283 (638)
T PRK10636 282 ------------------------------------------------------------------------------ML 283 (638)
T ss_pred ------------------------------------------------------------------------------HH
Confidence 00
Q ss_pred HHHHHHhccCCccccc---cccccCCCCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHH
Q 000406 1286 PAVLQITKRKPLIDNV---KGRKLERSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLI 1362 (1560)
Q Consensus 1286 ~ri~~i~~~~~~~~~~---~~~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL 1362 (1560)
+++... + ++..... .-+.........|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|
T Consensus 284 ~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~---~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l 358 (638)
T PRK10636 284 ERMELI-A-PAHVDNPFHFSFRAPESLPNPLLKMEKVSAGYGD---RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLL 358 (638)
T ss_pred HHhhcc-c-ccccCCceeEecCCCccCCCceEEEEeeEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHH
Confidence 010000 0 0000000 000001111235999999999963 4599999999999999999999999999999999
Q ss_pred hcccCCCccEEEECCEecCCCCHHHHhhceEEEcCCC--CCCC-ccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCC
Q 000406 1363 QRFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQEP--ALFA-GTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLP 1439 (1560)
Q Consensus 1363 ~rl~~p~~G~I~IdGvdi~~i~l~~LR~~I~~VpQdp--~LF~-gTIreNL~~g~~~~sd~eI~~al~~a~l~~~I~~Lp 1439 (1560)
+|+++|++|+|.+++. .+++|+||++ .+.. .|+.+++....+....+++.+.++..++..
T Consensus 359 ~G~~~p~~G~i~~~~~-----------~~igy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~------ 421 (638)
T PRK10636 359 AGELAPVSGEIGLAKG-----------IKLGYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQG------ 421 (638)
T ss_pred hCCCCCCCCeEEECCC-----------EEEEEecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcCCCh------
Confidence 9999999999999741 2699999985 3443 488888742222223344555554444321
Q ss_pred CCccccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHHHhh-cC
Q 000406 1440 QGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIRE-AN 1518 (1560)
Q Consensus 1440 ~Gldt~Vge~G~~LSGGQrQRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlsti~~-aD 1518 (1560)
.-.+.+ ...||||||||++|||||+.+|+||||||||++||+.+...+.+.|++. ++|||+|||++..+.. ||
T Consensus 422 ~~~~~~----~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~gtvi~vSHd~~~~~~~~d 495 (638)
T PRK10636 422 DKVTEE----TRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--EGALVVVSHDRHLLRSTTD 495 (638)
T ss_pred hHhcCc----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHhCC
Confidence 012233 3479999999999999999999999999999999999999999999986 4599999999999976 99
Q ss_pred EEEEEeCCEEE-EecCHHHHHh
Q 000406 1519 MIAVVRDGAVV-EYGSHETLLA 1539 (1560)
Q Consensus 1519 rIlVLd~G~Iv-E~Gt~~eLl~ 1539 (1560)
+|++|++|+|+ ..|++++..+
T Consensus 496 ~i~~l~~G~i~~~~g~~~~~~~ 517 (638)
T PRK10636 496 DLYLVHDGKVEPFDGDLEDYQQ 517 (638)
T ss_pred EEEEEECCEEEEcCCCHHHHHH
Confidence 99999999998 5699988753
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-61 Score=613.37 Aligned_cols=524 Identities=16% Similarity=0.160 Sum_probs=386.2
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 337 KYSTKLDMILVLLGCIGALINGGALPW-YSYFFGNFVNKIANESSDPDKTQMMKDAEKICLLMTVLAAIVMMGAYLEITC 415 (1560)
Q Consensus 337 ~y~~~~~~~~~~l~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~ 415 (1560)
+|+++. ++.++++++++++..++... .+++.+.++|.... .. ... ..++++.++.+++.++..++
T Consensus 6 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~---~~------~~~----~~~~~~~~~~~~~~~~~~~~ 71 (547)
T PRK10522 6 LVWRQY-RWPFISVMALSLASAALGIGLIAFINQRLIETADT---SL------LVL----PEFLGLLLLLMAVTLGSQLA 71 (547)
T ss_pred HHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc---cc------hHH----HHHHHHHHHHHHHHHHHHHH
Confidence 344433 33445555555555555544 34555666664321 00 011 11122222334456677778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchhhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 416 WRLVGERSAQRIRTKYLRAVLRQDIAFFDTEVSTSDIMHGISSDIAQIQEVMGEKVAHFAHNIFTFICGYTVGFLRSWKV 495 (1560)
Q Consensus 416 ~~~~~~~~~~~lr~~l~~~ll~~~l~ffd~~~~~G~i~~r~s~Dv~~i~~~l~~~l~~~i~~i~~~i~~~ii~~~~s~~l 495 (1560)
..+++.++..++|.+++++++++|+.+|+.. ++|++++|+++|++.+...+. .+..++..++.+++.+++++.++|.+
T Consensus 72 ~~~~~~~~~~~lR~~l~~~ll~~~~~~~~~~-~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~~~~~l~~~~~~l 149 (547)
T PRK10522 72 LTTLGHHFVYRLRSEFIKRILDTHVERIEQL-GSASLLASLTSDVRNITIAFV-RLPELVQGIILTLGSAAYLAWLSPKM 149 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHhcc-CccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 8889999999999999999999999999765 899999999999999998765 46778888888898999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcch---HHHHHHHHHHHHhHhHHHhHH
Q 000406 496 SLVVLSVTPLMMFCGMAYKAVYVGLTSKEEASYRRAGSVAEQAISSIRTVFSFVAE---DHFAVRYAGLLADSIPFGAKL 572 (1560)
Q Consensus 496 ~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIka~~~e---~~~~~~~~~~~~~~~~~~~k~ 572 (1560)
++++++++|+++++..++.++..+..++..+..++..+.+.|.++|+++++ ++.+ +.+.+++.+..++..+...+.
T Consensus 150 ~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (547)
T PRK10522 150 LLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDAQEYRHHIIRA 228 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHHHHHHhhhHHH
Confidence 999999999988888888888887777778888899999999999999996 4433 456777877776665554444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 000406 573 GFAKGAGMGVIYLVTYATWALAFWYGSILVARKELSGGAAIACFFGVNVGGRGLALSLSYFAQFAQGTVAATRVFEIIDR 652 (1560)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~ls~g~~~~~l~~~~~~~~~l~~~~~~~~~~~~a~~a~~Ri~~~l~~ 652 (1560)
.........+..++..+..++.++++..+. .+ +.+.+.++.++......++..+...+..+..+..+.+|+.++++.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~ 305 (547)
T PRK10522 229 DTFHLSAVNWSNIMMLGAIGLVFYMANSLG-WA--DTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALA 305 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 433333222222222222222223332221 12 222333333333334568888889999999999999999998764
Q ss_pred CCCCCCCCCCCCcCCCCcccEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEE
Q 000406 653 VPEIDPYNSEGRKLSSVSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732 (1560)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~g~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I 732 (1560)
+++.+. + .. ...+..+.|+++||+|+|+++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|
T Consensus 306 ~~~~~~-~-~~-~~~~~~~~i~~~~v~f~y~~~--~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i 380 (547)
T PRK10522 306 PYKAEF-P-RP-QAFPDWQTLELRNVTFAYQDN--GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEI 380 (547)
T ss_pred cccccc-c-cc-cccCcCceEEEEEEEEEeCCC--CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE
Confidence 322111 1 11 111123579999999999742 468999999999999999999999999999999999999999999
Q ss_pred EECCeecCCccHHHHhccEEEEecCCcCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCC
Q 000406 733 TLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQL 812 (1560)
Q Consensus 733 ~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Tv~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~L 812 (1560)
.+||+++++++...+|++|+||+|+|.+|++|+++| + +..+++++.++++..++.+++.. ++|. .+|.+|
T Consensus 381 ~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~-~~~~~~~~~~~~~~~~l~~~~~~-~~~~-----~~G~~L 450 (547)
T PRK10522 381 LLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---G-KPANPALVEKWLERLKMAHKLEL-EDGR-----ISNLKL 450 (547)
T ss_pred EECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---c-CchHHHHHHHHHHHcCCchhhhc-cccC-----CCCCCC
Confidence 999999999999999999999999999999999999 2 23345555555544444333321 2221 137899
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCccccccCCEEEEEeCCeEEEe
Q 000406 813 SGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKIS--VGRTTIVIAHRLATVKNANTIVVLDQGSVVEI 890 (1560)
Q Consensus 813 SgGQrQRialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~~D~i~vl~~G~iv~~ 890 (1560)
|||||||++||||++++|+|||||||||+||+++++.+.+.+.+.. +++|+|+||||++.+..||+|++|++|+++|.
T Consensus 451 SgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 451 SKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999887553 48999999999999999999999999999986
Q ss_pred -cChhh
Q 000406 891 -GNHRQ 895 (1560)
Q Consensus 891 -G~~~~ 895 (1560)
|+..+
T Consensus 531 ~~~~~~ 536 (547)
T PRK10522 531 TGEERD 536 (547)
T ss_pred cCCchh
Confidence 44333
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-61 Score=621.60 Aligned_cols=201 Identities=27% Similarity=0.444 Sum_probs=164.6
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhhce
Q 000406 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQT 1392 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~~I 1392 (1560)
-|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+ |.++ .|
T Consensus 319 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i 384 (635)
T PRK11147 319 VFEMENVNYQIDG---KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EV 384 (635)
T ss_pred eEEEeeeEEEECC---eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EE
Confidence 4999999999963 35999999999999999999999999999999999999999999999 4332 59
Q ss_pred EEEcCCC-CCCC-ccHHHHHhcCCCCC--C--HHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 000406 1393 ALVGQEP-ALFA-GTIRDNIALGNPKA--S--WAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARA 1466 (1560)
Q Consensus 1393 ~~VpQdp-~LF~-gTIreNL~~g~~~~--s--d~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLARA 1466 (1560)
+|++|++ .++. .|+.+|+.++.+.. . ..++.+.++..++. ++..+.++ ..||||||||++||||
T Consensus 385 ~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~----~~LSgGekqRl~la~a 454 (635)
T PRK11147 385 AYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFH------PKRAMTPV----KALSGGERNRLLLARL 454 (635)
T ss_pred EEEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCC------HHHHhChh----hhCCHHHHHHHHHHHH
Confidence 9999986 4555 49999998753221 1 22233333332221 11123344 4699999999999999
Q ss_pred HccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHHHhh-cCEEEEEe-CCEEEEe-cCHHHHHh
Q 000406 1467 ILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIRE-ANMIAVVR-DGAVVEY-GSHETLLA 1539 (1560)
Q Consensus 1467 LLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlsti~~-aDrIlVLd-~G~IvE~-Gt~~eLl~ 1539 (1560)
|+.+|+||||||||++||+.+...+.+.|++. ++|||+|||+++.+.. ||+|++|+ +|+|+++ |++++.++
T Consensus 455 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~~ 528 (635)
T PRK11147 455 FLKPSNLLILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDARQ 528 (635)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHHH
Confidence 99999999999999999999999999999876 5699999999999875 99999998 8999886 88888754
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-62 Score=583.62 Aligned_cols=452 Identities=25% Similarity=0.415 Sum_probs=359.2
Q ss_pred cEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccH-HHHhcc
Q 000406 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQV-KWLRTQ 750 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~-~~lr~~ 750 (1560)
-++++|++++|+. .++|+||||++.+||++||+|+||+|||||+|+|+|.|+|++|+|.+||+++.-.++ +.....
T Consensus 8 ll~~~~i~K~Fgg---V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~G 84 (500)
T COG1129 8 LLELRGISKSFGG---VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAG 84 (500)
T ss_pred eeeeecceEEcCC---ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCC
Confidence 4889999999974 579999999999999999999999999999999999999999999999999986655 456678
Q ss_pred EEEEecCCcCccc-cHHHHHhcCCCCCC------HHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHH
Q 000406 751 IGMVGQEPILFAT-SILENVLMGKENAT------MKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALA 823 (1560)
Q Consensus 751 i~~v~Q~~~lf~~-Tv~eNi~~g~~~~~------~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialA 823 (1560)
|+.|+||..|++. ||.|||.+|.+... ..+..+.+ .+.+..+ |++........+||+||||.|+||
T Consensus 85 I~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A-----~~~l~~l--g~~~~~~~~v~~LsiaqrQ~VeIA 157 (500)
T COG1129 85 IATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRA-----RELLARL--GLDIDPDTLVGDLSIAQRQMVEIA 157 (500)
T ss_pred cEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHH-----HHHHHHc--CCCCChhhhhhhCCHHHHHHHHHH
Confidence 9999999999986 99999999876432 23333222 2334544 222225556678999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCcccccc-CCEEEEEeCCeEEEecCh-hhHhhhc
Q 000406 824 RAMIKDPRILLLDEPTSALDSESESIVQQAIDKIS-VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNH-RQLLERG 900 (1560)
Q Consensus 824 RAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~-~~l~~~~ 900 (1560)
|||..+++|||||||||+|+....+.+++.++++. +|.++|+||||++++.. ||||.||+||+.+..++. .++-..
T Consensus 158 rAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~~~~~~~~- 236 (500)
T COG1129 158 RALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAETSED- 236 (500)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecccccCCCHH-
Confidence 99999999999999999999999999999999985 69999999999999977 999999999999875441 111000
Q ss_pred chHHHHHHHHHhhccCccccchhcccccchhhhhhhHHHhhhhhhhhhhhhhhhhhhhHHHhhhhHhhhhCCCCchhhHH
Q 000406 901 GAYHDLVKLASEAVSQPQSKQKDAKRGIEFSIYEKSVIEVSRSRYANEVSKSKYFKSMQAEIQTVEEEQQKPRPRKFQLS 980 (1560)
Q Consensus 901 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 980 (1560)
+
T Consensus 237 ----~--------------------------------------------------------------------------- 237 (500)
T COG1129 237 ----E--------------------------------------------------------------------------- 237 (500)
T ss_pred ----H---------------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 981 EIWKLQRPEFAMIIFGFILGMHAGAILSIFPLILGQALQVYFDDTASTLRRDVRYLSLALVGLGFGCIIFMTGQQGFCGW 1060 (1560)
Q Consensus 981 ~l~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 1060 (1560)
+.+ ...
T Consensus 238 -lv~-----------------------------------~Mv-------------------------------------- 243 (500)
T COG1129 238 -LVR-----------------------------------LMV-------------------------------------- 243 (500)
T ss_pred -HHH-----------------------------------Hhh--------------------------------------
Confidence 000 000
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCcccccCChHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 1061 AGTKLTMRVRELLFRSILKQEPGWFDFEENSTGVLVSRLSIDSISFRSVLGDRFSVLLMGLSSAAVGLGVSLVLNWRLTL 1140 (1560)
Q Consensus 1061 ~~~~~~~~Lr~~l~~~ll~~~~~ffd~~~~~~G~il~R~s~Di~~i~~~l~~~l~~~l~~~~~~i~~l~~~~~~~~~l~l 1140 (1560)
|+ +
T Consensus 244 --------------------------------Gr-------~-------------------------------------- 246 (500)
T COG1129 244 --------------------------------GR-------E-------------------------------------- 246 (500)
T ss_pred --------------------------------Cc-------c--------------------------------------
Confidence 00 0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHhcchhHHHhccchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 000406 1141 VAAALTPFTLGASYLSLIINVGPKIDNSSYAKASSIASGAVSNIRTVTTFSAQEQIINSFDKALSEPKKKSVKRSQILGL 1220 (1560)
Q Consensus 1141 v~l~~ipl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1220 (1560)
T Consensus 247 -------------------------------------------------------------------------------- 246 (500)
T COG1129 247 -------------------------------------------------------------------------------- 246 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccCCcccc
Q 000406 1221 TLGFSQGAMYVAYTFTLWFGAYLVKQGHASFGVVYKIFLILVLSSFSVGQLAGLAPDTSMAATAIPAVLQITKRKPLIDN 1300 (1560)
Q Consensus 1221 ~~~~~~~~~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~s~~ri~~i~~~~~~~~~ 1300 (1560)
+.+.-+. .
T Consensus 247 ----------------------------------------------------------------------~~~~~~~-~- 254 (500)
T COG1129 247 ----------------------------------------------------------------------LEDLFPE-P- 254 (500)
T ss_pred ----------------------------------------------------------------------hhhhccc-c-
Confidence 0000000 0
Q ss_pred ccccccCCCCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEec
Q 000406 1301 VKGRKLERSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDL 1380 (1560)
Q Consensus 1301 ~~~~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi 1380 (1560)
. .....+..++++|++.. ..++|+||++++||++||.|--|||+|-|+++|+|..++.+|+|.+||.++
T Consensus 255 ~----~~~~~~~~l~v~~l~~~-------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v 323 (500)
T COG1129 255 P----EEGIGEPVLEVRNLSGG-------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPV 323 (500)
T ss_pred c----ccCCCCcEEEEecCCCC-------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEc
Confidence 0 00011224778887642 158999999999999999999999999999999999999999999999998
Q ss_pred CCCCH-HHHhhceEEEcCCCC----CCCccHHHHHhcCCC-CCCHH-HHHHHHHHHhHHHHHHhCC---CCccccccCCC
Q 000406 1381 REINV-KWLRKQTALVGQEPA----LFAGTIRDNIALGNP-KASWA-EIEEAAEEAYIHKFISSLP---QGYETQVGESG 1450 (1560)
Q Consensus 1381 ~~i~l-~~LR~~I~~VpQdp~----LF~gTIreNL~~g~~-~~sd~-eI~~al~~a~l~~~I~~Lp---~Gldt~Vge~G 1450 (1560)
.--++ +.++..|+|||-|.. +...+|++|+.+..- ..... -+....+.....+++..|. .+.+.+++
T Consensus 324 ~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~--- 400 (500)
T COG1129 324 RIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIG--- 400 (500)
T ss_pred cCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhh---
Confidence 88776 478889999999884 556799999987521 11101 3455666667777887773 34556665
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCceEEEEecChHHHh-hcCEEEEEeCCEE
Q 000406 1451 VQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVS-KRATTIVVAHRLSTIR-EANMIAVVRDGAV 1528 (1560)
Q Consensus 1451 ~~LSGGQrQRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~-~~~TvI~IAHRlsti~-~aDrIlVLd~G~I 1528 (1560)
+||||.+|+++|||+|..+|+||||||||.++|..+.+.|.+.|+++. +|.+||+||-.+..+. .||||+||.+|+|
T Consensus 401 -~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri 479 (500)
T COG1129 401 -TLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRI 479 (500)
T ss_pred -cCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEE
Confidence 699999999999999999999999999999999999999999999875 5699999999999987 5999999999999
Q ss_pred EEe
Q 000406 1529 VEY 1531 (1560)
Q Consensus 1529 vE~ 1531 (1560)
+..
T Consensus 480 ~~e 482 (500)
T COG1129 480 VGE 482 (500)
T ss_pred EEE
Confidence 874
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-61 Score=618.88 Aligned_cols=200 Identities=26% Similarity=0.344 Sum_probs=164.6
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhhce
Q 000406 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQT 1392 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~~I 1392 (1560)
-|+++||+++|++. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+++ +.+|
T Consensus 508 ~L~~~~ls~~y~~~--~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~i 574 (718)
T PLN03073 508 IISFSDASFGYPGG--PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVRM 574 (718)
T ss_pred eEEEEeeEEEeCCC--CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------ceeE
Confidence 59999999999632 3589999999999999999999999999999999999999999999875 2479
Q ss_pred EEEcCCCCCCCccHHHHHhc----CCCCCCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHc
Q 000406 1393 ALVGQEPALFAGTIRDNIAL----GNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAIL 1468 (1560)
Q Consensus 1393 ~~VpQdp~LF~gTIreNL~~----g~~~~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLARALL 1468 (1560)
+|+||++. ...++.+|... ..+..+++++.++++..++.+.. .......||||||||++|||||+
T Consensus 575 gyv~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~----------~~~~~~~LSgGqkqRvaLAraL~ 643 (718)
T PLN03073 575 AVFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNL----------ALQPMYTLSGGQKSRVAFAKITF 643 (718)
T ss_pred EEEecccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHH----------hcCCccccCHHHHHHHHHHHHHh
Confidence 99999973 23355555321 12334566777777776664211 12234579999999999999999
Q ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHHHhh-cCEEEEEeCCEEE-EecCHHHHH
Q 000406 1469 KGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIRE-ANMIAVVRDGAVV-EYGSHETLL 1538 (1560)
Q Consensus 1469 r~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlsti~~-aDrIlVLd~G~Iv-E~Gt~~eLl 1538 (1560)
.+|+||||||||++||+.+...+.+.|++. + +|+|+|||++..+.. ||+|++|++|+|+ ..|++++..
T Consensus 644 ~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~-~-gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~~ 713 (718)
T PLN03073 644 KKPHILLLDEPSNHLDLDAVEALIQGLVLF-Q-GGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDYK 713 (718)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHHH
Confidence 999999999999999999999999999875 3 599999999999976 9999999999998 568887754
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-58 Score=595.83 Aligned_cols=531 Identities=15% Similarity=0.119 Sum_probs=431.3
Q ss_pred cHHHHHHHhhhhhH----HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHHHHH
Q 000406 331 GLFSLFKYSTKLDM----ILVLLGCIGALINGGALPWYSYFFGNFVNKIANESSDPDKTQMMKDAEKICLLMTVLAAIVM 406 (1560)
Q Consensus 331 ~~~~l~~y~~~~~~----~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 406 (1560)
.+.++++|..++.+ ..+++.+++.++..++..+.+++.+.+++...... ...+...+..++++++++.++..
T Consensus 78 ~~~~l~~~~~p~~~~~~~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~----~~~f~~~l~~~~l~~~~~~~~~~ 153 (659)
T TIGR00954 78 KLDFLLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRRS----PRNFAWILFKWFLIAPPASFINS 153 (659)
T ss_pred HHHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcC----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567777765443 35667777778888888899999999999877432 11222223344445555556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 407 MGAYLEITCWRLVGERSAQRIRTKYLRAVLRQDIAFFDTEVSTSDIMHGISSDIAQIQEVMGEKVAHFAHNIFTFICGYT 486 (1560)
Q Consensus 407 ~~~~l~~~~~~~~~~~~~~~lr~~l~~~ll~~~l~ffd~~~~~G~i~~r~s~Dv~~i~~~l~~~l~~~i~~i~~~i~~~i 486 (1560)
+..++..++...+..++..++|..++++....++.+||. ++|++.+|+++|++.+.+.+...+..++..++.+++.++
T Consensus 154 ~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~--~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~ 231 (659)
T TIGR00954 154 AIKYLLKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDS--RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSF 231 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeccCCC--CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777777777888888889999999888888999974 689999999999999999999999999999999998888
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHhH
Q 000406 487 VGFL-RSWKVSLVVLSVTPLMMFCGMAYKAVYVGLTSKEEASYRRAGSVAEQAISSIRTVFSFVAEDHFAVRYAGLLADS 565 (1560)
Q Consensus 487 i~~~-~s~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIka~~~e~~~~~~~~~~~~~~ 565 (1560)
+++. ++|.+++++++.+|+.+++.+++.+.+.++..+.++..++..+...|.++|+++||+|+.|+.+.+++.+..++.
T Consensus 232 ~L~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l 311 (659)
T TIGR00954 232 KLLTALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRL 311 (659)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 7775 999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH-hc----ccccHHHHHHH-HHH---HHHHHHHHHHHHHHHH
Q 000406 566 IPFGAKLGFAKGAGMGVIYLVTYA--TWALAFWYGSILV-AR----KELSGGAAIAC-FFG---VNVGGRGLALSLSYFA 634 (1560)
Q Consensus 566 ~~~~~k~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~lv-~~----g~ls~g~~~~~-l~~---~~~~~~~l~~~~~~~~ 634 (1560)
.+...+.....+....+..++... ..++.++.|...+ .. |.++.|.+++. ..+ +..+..++..+...+.
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~ 391 (659)
T TIGR00954 312 VEHLNLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGR 391 (659)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888877777776665432 2222223333232 22 67888876653 322 3445678888889999
Q ss_pred HHHHHHHHHHHHHHHHccCCCCCC------C-CC--CC-------------CcCCCCcccEEEEEEEEEcCCCCCccccc
Q 000406 635 QFAQGTVAATRVFEIIDRVPEIDP------Y-NS--EG-------------RKLSSVSGKIEFKGVTFAYPSRPETVILR 692 (1560)
Q Consensus 635 ~~~~a~~a~~Ri~~~l~~~~~~~~------~-~~--~~-------------~~~~~~~g~i~~~~vs~~y~~~~~~~vL~ 692 (1560)
.+.++.++.+|+.++++..++.+. . +. .. .......+.|+++||+|+|+++ .++|+
T Consensus 392 ~i~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~--~~il~ 469 (659)
T TIGR00954 392 DMTRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG--DVLIE 469 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC--Ceeee
Confidence 999999999999999975432210 0 00 00 0011134579999999999742 36999
Q ss_pred cceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHHHhccEEEEecCCcCccccHHHHHhcC
Q 000406 693 SLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMG 772 (1560)
Q Consensus 693 ~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Tv~eNi~~g 772 (1560)
|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ |++|+||||+|.+|++|++|||.++
T Consensus 470 ~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~ 538 (659)
T TIGR00954 470 SLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYP 538 (659)
T ss_pred cceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcC
Confidence 99999999999999999999999999999999999999999874 4679999999999999999999987
Q ss_pred C-------CCCCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHH
Q 000406 773 K-------ENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSE 845 (1560)
Q Consensus 773 ~-------~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARAl~~~p~illLDEpts~LD~~ 845 (1560)
. +..+++++.++++.+++++++.. |.|+||..+ .+.+||||||||++|||||+++|++||||||||+||++
T Consensus 539 ~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~ 616 (659)
T TIGR00954 539 DSSEDMKRRGLSDKDLEQILDNVQLTHILER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVD 616 (659)
T ss_pred CChhhhhccCCCHHHHHHHHHHcCCHHHHhh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHH
Confidence 4 23456778889999999998877 899999876 56799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEecCccccccCCEEEEEeC
Q 000406 846 SESIVQQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQ 884 (1560)
Q Consensus 846 ~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~D~i~vl~~ 884 (1560)
+++.+.+.+++. |+|+|+||||++.+..||+|++|+.
T Consensus 617 ~~~~l~~~l~~~--~~tvI~isH~~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 617 VEGYMYRLCREF--GITLFSVSHRKSLWKYHEYLLYMDG 653 (659)
T ss_pred HHHHHHHHHHHc--CCEEEEEeCchHHHHhCCEEEEEeC
Confidence 999999999874 8999999999999989999999973
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-60 Score=551.46 Aligned_cols=457 Identities=24% Similarity=0.438 Sum_probs=363.0
Q ss_pred cEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCC-ccHHHHhcc
Q 000406 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKS-LQVKWLRTQ 750 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~-~~~~~lr~~ 750 (1560)
.|+++++++.|| ...+++||||+|++||++||+|+||+|||||+++|.|+|+|++|+|.+||++++- -+.+.+|..
T Consensus 4 ~l~~~~itK~f~---~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~G 80 (501)
T COG3845 4 ALEMRGITKRFP---GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLG 80 (501)
T ss_pred eEEEeccEEEcC---CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcC
Confidence 589999999998 3679999999999999999999999999999999999999999999999999974 456688899
Q ss_pred EEEEecCCcCccc-cHHHHHhcCCCCC-----CHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHH
Q 000406 751 IGMVGQEPILFAT-SILENVLMGKENA-----TMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALAR 824 (1560)
Q Consensus 751 i~~v~Q~~~lf~~-Tv~eNi~~g~~~~-----~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialAR 824 (1560)
||+|+|++.|++. ||.|||.+|.+.. +..+.. ..+.+..++. |++-...+...+||-||||||.|-+
T Consensus 81 IGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~-----~~i~~l~~~y--Gl~vdp~~~V~dLsVG~qQRVEIlK 153 (501)
T COG3845 81 IGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQAR-----ARIKELSERY--GLPVDPDAKVADLSVGEQQRVEILK 153 (501)
T ss_pred CcEEeeccccccccchhhhhhhcCccccccccCHHHHH-----HHHHHHHHHh--CCCCCccceeecCCcchhHHHHHHH
Confidence 9999999999987 9999999998642 122221 1222333333 6666667777899999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhHhhhcch
Q 000406 825 AMIKDPRILLLDEPTSALDSESESIVQQAIDKIS-VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLERGGA 902 (1560)
Q Consensus 825 Al~~~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l~~~~~~ 902 (1560)
|||++|++||||||||-|-|...+.+++.++.+. .|+|||+|||+++++.. |||+.||++|+++..-++..
T Consensus 154 aLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~~~~------- 226 (501)
T COG3845 154 ALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVDPVA------- 226 (501)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeecCCC-------
Confidence 9999999999999999999999999999999884 69999999999999987 99999999999865322100
Q ss_pred HHHHHHHHHhhccCccccchhcccccchhhhhhhHHHhhhhhhhhhhhhhhhhhhhHHHhhhhHhhhhCCCCchhhHHHH
Q 000406 903 YHDLVKLASEAVSQPQSKQKDAKRGIEFSIYEKSVIEVSRSRYANEVSKSKYFKSMQAEIQTVEEEQQKPRPRKFQLSEI 982 (1560)
Q Consensus 903 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 982 (1560)
+.. . . .+
T Consensus 227 -----------------------~~t-----~-------------------------~--------------------el 233 (501)
T COG3845 227 -----------------------ETT-----E-------------------------E--------------------EL 233 (501)
T ss_pred -----------------------CCC-----H-------------------------H--------------------HH
Confidence 000 0 0 00
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 983 WKLQRPEFAMIIFGFILGMHAGAILSIFPLILGQALQVYFDDTASTLRRDVRYLSLALVGLGFGCIIFMTGQQGFCGWAG 1062 (1560)
Q Consensus 983 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 1062 (1560)
.. ++ +
T Consensus 234 a~------------lM-----------------------v---------------------------------------- 238 (501)
T COG3845 234 AE------------LM-----------------------V---------------------------------------- 238 (501)
T ss_pred HH------------Hh-----------------------c----------------------------------------
Confidence 00 00 0
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCcccccCChHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 1063 TKLTMRVRELLFRSILKQEPGWFDFEENSTGVLVSRLSIDSISFRSVLGDRFSVLLMGLSSAAVGLGVSLVLNWRLTLVA 1142 (1560)
Q Consensus 1063 ~~~~~~Lr~~l~~~ll~~~~~ffd~~~~~~G~il~R~s~Di~~i~~~l~~~l~~~l~~~~~~i~~l~~~~~~~~~l~lv~ 1142 (1560)
.. +
T Consensus 239 -----------------------G~--------------~---------------------------------------- 241 (501)
T COG3845 239 -----------------------GR--------------E---------------------------------------- 241 (501)
T ss_pred -----------------------CC--------------c----------------------------------------
Confidence 00 0
Q ss_pred HHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHhcchhHHHhccchHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 000406 1143 AALTPFTLGASYLSLIINVGPKIDNSSYAKASSIASGAVSNIRTVTTFSAQEQIINSFDKALSEPKKKSVKRSQILGLTL 1222 (1560)
Q Consensus 1143 l~~ipl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1222 (1560)
T Consensus 242 -------------------------------------------------------------------------------- 241 (501)
T COG3845 242 -------------------------------------------------------------------------------- 241 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccCCcccccc
Q 000406 1223 GFSQGAMYVAYTFTLWFGAYLVKQGHASFGVVYKIFLILVLSSFSVGQLAGLAPDTSMAATAIPAVLQITKRKPLIDNVK 1302 (1560)
Q Consensus 1223 ~~~~~~~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~s~~ri~~i~~~~~~~~~~~ 1302 (1560)
. .....
T Consensus 242 --------------------------v---------------------------------------------~~~~~--- 247 (501)
T COG3845 242 --------------------------V---------------------------------------------VLRVV--- 247 (501)
T ss_pred --------------------------c---------------------------------------------ccccc---
Confidence 0 00000
Q ss_pred ccccCCCCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEec-C
Q 000406 1303 GRKLERSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDL-R 1381 (1560)
Q Consensus 1303 ~~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi-~ 1381 (1560)
.....+...-++++|++..=.. ....+++|||+|++||++||.|-.|-|-+.|+.+|.|+..|.+|+|+++|.|+ .
T Consensus 248 -~~~~~pg~~vL~V~~L~v~~~~--~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~ 324 (501)
T COG3845 248 -KPPSTPGEVVLEVEDLSVKDRR--GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLG 324 (501)
T ss_pred -cCCCCCCCeEEEEeeeEeecCC--CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccc
Confidence 0011112335899999985432 24689999999999999999999999999999999999999999999999997 6
Q ss_pred CCCHHHHhh-ceEEEcCCCC----CCCccHHHHHhcCCCC---------CCHHHHHHHHHHHhHHHHHHhC---CCCccc
Q 000406 1382 EINVKWLRK-QTALVGQEPA----LFAGTIRDNIALGNPK---------ASWAEIEEAAEEAYIHKFISSL---PQGYET 1444 (1560)
Q Consensus 1382 ~i~l~~LR~-~I~~VpQdp~----LF~gTIreNL~~g~~~---------~sd~eI~~al~~a~l~~~I~~L---p~Gldt 1444 (1560)
..+...+|+ .++|||.|.+ ..+.|+.||+.++.-. ....++... ..+.++++ +.+.++
T Consensus 325 ~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~-----a~~li~~fdVr~~~~~~ 399 (501)
T COG3845 325 RLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKF-----ARELIEEFDVRAPSPDA 399 (501)
T ss_pred cCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHH-----HHHHHHHcCccCCCCCc
Confidence 778877665 5999999995 6788999999875322 122334333 23334433 345666
Q ss_pred cccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCceEEEEecChHHHhh-cCEEEE
Q 000406 1445 QVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVS-KRATTIVVAHRLSTIRE-ANMIAV 1522 (1560)
Q Consensus 1445 ~Vge~G~~LSGGQrQRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~-~~~TvI~IAHRlsti~~-aDrIlV 1522 (1560)
++. +||||+.||+-+||-|.++|++||..+||-+||..+.+.|.+.|.+.. +|+.|++|+-.|+.+.. ||||.|
T Consensus 400 ~a~----~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaV 475 (501)
T COG3845 400 PAR----SLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAV 475 (501)
T ss_pred chh----hcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeee
Confidence 655 799999999999999999999999999999999999999999998764 67899999999999866 999999
Q ss_pred EeCCEEEEecCHHH
Q 000406 1523 VRDGAVVEYGSHET 1536 (1560)
Q Consensus 1523 Ld~G~IvE~Gt~~e 1536 (1560)
|.+|+|+...++++
T Consensus 476 i~~Gri~~~~~~~~ 489 (501)
T COG3845 476 IYEGRIVGIVPPEE 489 (501)
T ss_pred eeCCceeccccccc
Confidence 99999998877665
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-58 Score=594.59 Aligned_cols=527 Identities=15% Similarity=0.079 Sum_probs=420.2
Q ss_pred HHHHHHhhhhhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 000406 979 LSEIWKLQRPEFA-----MIIFGFILGMHAGAILSIFPLILGQALQVYFDDTASTLRRDVRYLSLALVGLGFGCIIFMTG 1053 (1560)
Q Consensus 979 ~~~l~~~~~~~~~-----~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 1053 (1560)
+..++++.++++. .+++++++.++...+....|.+.+.+++................+.++++++.++..+..++
T Consensus 79 ~~~l~~~~~p~~~~~~~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~~~~~ 158 (659)
T TIGR00954 79 LDFLLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSAIKYL 158 (659)
T ss_pred HHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777665 45566666666777777888888888887664332212111223334444445555566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccCChHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 1054 QQGFCGWAGTKLTMRVRELLFRSILKQEPGWFDFEENSTGVLVSRLSIDSISFRSVLGDRFSVLLMGLSSAAVGLGVSLV 1133 (1560)
Q Consensus 1054 ~~~~~~~~~~~~~~~Lr~~l~~~ll~~~~~ffd~~~~~~G~il~R~s~Di~~i~~~l~~~l~~~l~~~~~~i~~l~~~~~ 1133 (1560)
..++......++..++++..+++....++.||| + ++|++++|+++|++.+.+.+...+..++..++.++++++.++.
T Consensus 159 ~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d--~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~ 235 (659)
T TIGR00954 159 LKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLD--S-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLT 235 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCceEEeccCC--C-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777788888888888888888888888887 2 7899999999999999999999999999999999988887776
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHH-HHHhcchhhhhhhHHHHHHHHHHHhcchhHHHhccchHHHHHHHHHHHhhhHHHH
Q 000406 1134 -LNWRLTLVAAALTPFTLGASYLS-LIINVGPKIDNSSYAKASSIASGAVSNIRTVTTFSAQEQIINSFDKALSEPKKKS 1211 (1560)
Q Consensus 1134 -~~~~l~lv~l~~ipl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~ 1211 (1560)
++|.+++++++.+|+.+++..+. .......+..+...+...+.+.|.+.|+++|++|+.++.+.+++++..++..+..
T Consensus 236 ~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~ 315 (659)
T TIGR00954 236 ALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHL 315 (659)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 99999998888888777655443 3333333444667778899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHh-c----CcccHHHHHH-HHHH---HHHHHHHHHHHHhhHHHHHH
Q 000406 1212 VKRSQILGLTLGFSQGAMYV--AYTFTLWFGAYLVK-Q----GHASFGVVYK-IFLI---LVLSSFSVGQLAGLAPDTSM 1280 (1560)
Q Consensus 1212 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~lv~-~----g~~s~g~~~~-~~~~---~~~~~~~i~~l~~~~~~~~~ 1280 (1560)
.+..++......+..++... ..+..++.|...+. . |.++.|.+++ ++.+ +..+..++..+.....++..
T Consensus 316 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~ 395 (659)
T TIGR00954 316 NLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTR 395 (659)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888888888887776543 22223333442332 2 7888887766 3333 44557889999999999999
Q ss_pred HHHHHHHHHHHhccCCcccc-------ccc---c-------------ccCCCCCccEEEEEEEEEcCCCCCccceeeeeE
Q 000406 1281 AATAIPAVLQITKRKPLIDN-------VKG---R-------------KLERSKPLGIELKMVTFTYPSRPEVTVLKDFCL 1337 (1560)
Q Consensus 1281 ~~~s~~ri~~i~~~~~~~~~-------~~~---~-------------~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~vSf 1337 (1560)
+..+.+|+.++++.+++.+. ... . .......+.|+++||+|+|+++ .++|+|+||
T Consensus 396 ~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~--~~il~~isl 473 (659)
T TIGR00954 396 LAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG--DVLIESLSF 473 (659)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC--CeeeecceE
Confidence 99999999999875432110 000 0 0000123459999999999743 369999999
Q ss_pred EEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhhceEEEcCCCCCCCccHHHHHhcCC---
Q 000406 1338 KVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGN--- 1414 (1560)
Q Consensus 1338 ~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~~I~~VpQdp~LF~gTIreNL~~g~--- 1414 (1560)
+|++||++||+||||||||||+++|+|+++|++|+|.+|+ |++++||||+|.+|++|++|||.++.
T Consensus 474 ~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~~~ 542 (659)
T TIGR00954 474 EVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSSE 542 (659)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCChh
Confidence 9999999999999999999999999999999999999874 67899999999999999999999863
Q ss_pred ----CCCCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHH
Q 000406 1415 ----PKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKH 1490 (1560)
Q Consensus 1415 ----~~~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLARALLr~p~ILILDEaTSaLD~~Te~~ 1490 (1560)
+..++++++++++.+++++++.. |.||||..+ .+.+||||||||++|||||+++|++||||||||+||+++++.
T Consensus 543 ~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~ 620 (659)
T TIGR00954 543 DMKRRGLSDKDLEQILDNVQLTHILER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGY 620 (659)
T ss_pred hhhccCCCHHHHHHHHHHcCCHHHHhh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHH
Confidence 34678899999999999999987 999999987 467999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCceEEEEecChHHHhhcCEEEEEeC
Q 000406 1491 VQDALRKVSKRATTIVVAHRLSTIREANMIAVVRD 1525 (1560)
Q Consensus 1491 I~~~L~~~~~~~TvI~IAHRlsti~~aDrIlVLd~ 1525 (1560)
+++.+++. ++|+|+||||++++..||+|++|+.
T Consensus 621 l~~~l~~~--~~tvI~isH~~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 621 MYRLCREF--GITLFSVSHRKSLWKYHEYLLYMDG 653 (659)
T ss_pred HHHHHHHc--CCEEEEEeCchHHHHhCCEEEEEeC
Confidence 99999874 8999999999999999999999973
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-60 Score=604.66 Aligned_cols=436 Identities=24% Similarity=0.326 Sum_probs=318.4
Q ss_pred EEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEE-----------ECCeecCCccHH
Q 000406 677 GVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLIT-----------LDGHDLKSLQVK 745 (1560)
Q Consensus 677 ~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~-----------i~g~~i~~~~~~ 745 (1560)
+++++|+. +..+|++++ .+++||+++|+||||||||||+++|+|+++|++|+|. ++|.++.+....
T Consensus 78 ~~~~~yg~--~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~ 154 (590)
T PRK13409 78 EPVHRYGV--NGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKK 154 (590)
T ss_pred CceEEecC--CceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHH
Confidence 48899963 245899999 8999999999999999999999999999999999997 899888654321
Q ss_pred --HHhccEE----EEecCCcCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHH
Q 000406 746 --WLRTQIG----MVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQR 819 (1560)
Q Consensus 746 --~lr~~i~----~v~Q~~~lf~~Tv~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQR 819 (1560)
..+.+++ +++|.|.+|.+|++||+.... ..+++ .+.++.+ |++...+....+||||||||
T Consensus 155 ~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~---~~~~~---------~~~l~~l--~l~~~~~~~~~~LSgGe~qr 220 (590)
T PRK13409 155 LYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVD---ERGKL---------DEVVERL--GLENILDRDISELSGGELQR 220 (590)
T ss_pred HhccCcceeecccchhhhhhhhcchHHHHHHhhh---HHHHH---------HHHHHHc--CCchhhcCChhhCCHHHHHH
Confidence 1122344 455566778889999987421 11112 2233343 55555667778999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhHhh
Q 000406 820 IALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLE 898 (1560)
Q Consensus 820 ialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l~~ 898 (1560)
++|||||+++|+|||||||||+||+.+...+.+.|+++.+|+|+|+|||+++.+.. ||+|++|+++. |.+.....
T Consensus 221 v~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~~~----g~~g~~~~ 296 (590)
T PRK13409 221 VAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYGEP----GAYGVVSK 296 (590)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCc----cccceecc
Confidence 99999999999999999999999999999999999988558999999999999976 99999997631 10000000
Q ss_pred hcchHHHHHHHHHhhccCccccchhcccccchhhhhhhHHHhhhhhhhhhhhhhhhhhhhHHHhhhhHhhhhCCCCchhh
Q 000406 899 RGGAYHDLVKLASEAVSQPQSKQKDAKRGIEFSIYEKSVIEVSRSRYANEVSKSKYFKSMQAEIQTVEEEQQKPRPRKFQ 978 (1560)
Q Consensus 899 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 978 (1560)
+ . . . +. .
T Consensus 297 ------------------~---------~---~--------~-~~-------------~--------------------- 303 (590)
T PRK13409 297 ------------------P---------K---G--------V-RV-------------G--------------------- 303 (590)
T ss_pred ------------------h---------h---H--------H-HH-------------h---------------------
Confidence 0 0 0 0 00 0
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 979 LSEIWKLQRPEFAMIIFGFILGMHAGAILSIFPLILGQALQVYFDDTASTLRRDVRYLSLALVGLGFGCIIFMTGQQGFC 1058 (1560)
Q Consensus 979 ~~~l~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 1058 (1560)
. ..+.. .+.
T Consensus 304 i---------------------------------------~~~~~-------------------------------~~~- 312 (590)
T PRK13409 304 I---------------------------------------NEYLK-------------------------------GYL- 312 (590)
T ss_pred H---------------------------------------HHHHH-------------------------------hcc-
Confidence 0 00000 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCcccccCChHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 1059 GWAGTKLTMRVRELLFRSILKQEPGWFDFEENSTGVLVSRLSIDSISFRSVLGDRFSVLLMGLSSAAVGLGVSLVLNWRL 1138 (1560)
Q Consensus 1059 ~~~~~~~~~~Lr~~l~~~ll~~~~~ffd~~~~~~G~il~R~s~Di~~i~~~l~~~l~~~l~~~~~~i~~l~~~~~~~~~l 1138 (1560)
.. ..+.+
T Consensus 313 -----------~~--------e~~~~------------------------------------------------------ 319 (590)
T PRK13409 313 -----------PE--------ENMRI------------------------------------------------------ 319 (590)
T ss_pred -----------hh--------hhhhc------------------------------------------------------
Confidence 00 00000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHhcchhHHHhccchHHHHHHHHHHHhhhHHHHHHHHHHH
Q 000406 1139 TLVAAALTPFTLGASYLSLIINVGPKIDNSSYAKASSIASGAVSNIRTVTTFSAQEQIINSFDKALSEPKKKSVKRSQIL 1218 (1560)
Q Consensus 1139 ~lv~l~~ipl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 1218 (1560)
. ..
T Consensus 320 --------------------------------------------------------------~---~~------------ 322 (590)
T PRK13409 320 --------------------------------------------------------------R---PE------------ 322 (590)
T ss_pred --------------------------------------------------------------c---cc------------
Confidence 0 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccCCcc
Q 000406 1219 GLTLGFSQGAMYVAYTFTLWFGAYLVKQGHASFGVVYKIFLILVLSSFSVGQLAGLAPDTSMAATAIPAVLQITKRKPLI 1298 (1560)
Q Consensus 1219 ~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~s~~ri~~i~~~~~~~ 1298 (1560)
.+. ....+..
T Consensus 323 -----------------------------~~~-----------------------------------------~~~~~~~ 332 (590)
T PRK13409 323 -----------------------------PIE-----------------------------------------FEERPPR 332 (590)
T ss_pred -----------------------------Ccc-----------------------------------------eecCCCc
Confidence 000 0000000
Q ss_pred ccccccccCCCCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCE
Q 000406 1299 DNVKGRKLERSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGV 1378 (1560)
Q Consensus 1299 ~~~~~~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGv 1378 (1560)
. . .....-++++|++++|.+ ..|+++||+|++||++||+|+||||||||+++|+|+.+|++|+|.++
T Consensus 333 ~---~----~~~~~~l~~~~ls~~~~~----~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-- 399 (590)
T PRK13409 333 D---E----SERETLVEYPDLTKKLGD----FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-- 399 (590)
T ss_pred c---c----cCCceEEEEcceEEEECC----EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe--
Confidence 0 0 001224899999999953 25999999999999999999999999999999999999999999986
Q ss_pred ecCCCCHHHHhhceEEEcCCCCC-CCccHHHHHhcCCCCCC-HHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChH
Q 000406 1379 DLREINVKWLRKQTALVGQEPAL-FAGTIRDNIALGNPKAS-WAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGG 1456 (1560)
Q Consensus 1379 di~~i~l~~LR~~I~~VpQdp~L-F~gTIreNL~~g~~~~s-d~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGG 1456 (1560)
+ .++|+||++.+ ++.|++||+.++..... ...+.++++..++.+.. ......||||
T Consensus 400 -~----------~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~-----------~~~~~~LSGG 457 (590)
T PRK13409 400 -L----------KISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLL-----------DKNVKDLSGG 457 (590)
T ss_pred -e----------eEEEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHH-----------hCCcccCCHH
Confidence 1 59999999875 46799999987522221 23345555555554332 2334479999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CceEEEEecChHHHhh-cCEEEEEeCCEEEEecC
Q 000406 1457 QKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSK--RATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGS 1533 (1560)
Q Consensus 1457 QrQRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~--~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt 1533 (1560)
||||++|||||+++|+||||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+.. ||||++|++ ++...|+
T Consensus 458 e~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~ 536 (590)
T PRK13409 458 ELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKHGH 536 (590)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeee
Confidence 99999999999999999999999999999999999999998753 6899999999999875 999999975 7777765
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-59 Score=574.59 Aligned_cols=483 Identities=28% Similarity=0.435 Sum_probs=347.1
Q ss_pred cEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHHHhccE
Q 000406 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQI 751 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 751 (1560)
.|+++|++++|+. +++|+|+||++.+|+++||||+||||||||+++|+|...|++|+|...+. -+|
T Consensus 3 ~i~~~~ls~~~g~---~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-----------~~v 68 (530)
T COG0488 3 MITLENLSLAYGD---RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-----------LRV 68 (530)
T ss_pred eEEEeeeEEeeCC---ceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-----------ceE
Confidence 4889999999963 56999999999999999999999999999999999999999999998752 269
Q ss_pred EEEecCCcCccc-cHHHHHhcCCCCCCH--HHHHHHH------------------H-------HhhhHHHHHhCCCCCCc
Q 000406 752 GMVGQEPILFAT-SILENVLMGKENATM--KEAVAAC------------------K-------AASAHSFISELPLGYDT 803 (1560)
Q Consensus 752 ~~v~Q~~~lf~~-Tv~eNi~~g~~~~~~--~~~~~~~------------------~-------~~~~~~~i~~l~~gl~t 803 (1560)
+|++|++.+.+. ||.+.+..+...... .+...+. . .+.+...+..+ |+..
T Consensus 69 ~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gL--g~~~ 146 (530)
T COG0488 69 GYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGL--GFPD 146 (530)
T ss_pred EEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcC--CCCc
Confidence 999999999876 999999887542110 0000000 0 02222333333 4443
Q ss_pred ccCCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCcccccc-CCEEEEE
Q 000406 804 QVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKN-ANTIVVL 882 (1560)
Q Consensus 804 ~~~~~g~~LSgGQrQRialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~D~i~vl 882 (1560)
. .....+||||||.|++|||||+.+|+||||||||++||.++..++.+.|.+.. | |+|+||||.+++.. |++|+.+
T Consensus 147 ~-~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~-g-tviiVSHDR~FLd~V~t~I~~l 223 (530)
T COG0488 147 E-DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYP-G-TVIVVSHDRYFLDNVATHILEL 223 (530)
T ss_pred c-cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCC-C-cEEEEeCCHHHHHHHhhheEEe
Confidence 3 55667999999999999999999999999999999999999999999998654 5 99999999999987 9999999
Q ss_pred eCCeEE-EecChhhHhhhcchHHHHHHHHHhhccCccccchhcccccchhhhhhhHHHhhhhhhhhhhhhhhhhhhhHHH
Q 000406 883 DQGSVV-EIGNHRQLLERGGAYHDLVKLASEAVSQPQSKQKDAKRGIEFSIYEKSVIEVSRSRYANEVSKSKYFKSMQAE 961 (1560)
Q Consensus 883 ~~G~iv-~~G~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 961 (1560)
+.|++. ..|+++..++.. ..... . .. ... ...+.+
T Consensus 224 d~g~l~~y~Gny~~~~~~r----------~~~~~------~-~~--------------------------~~~-~~~~~~ 259 (530)
T COG0488 224 DRGKLTPYKGNYSSYLEQK----------AERLR------Q-EA--------------------------AAY-EKQQKE 259 (530)
T ss_pred cCCceeEecCCHHHHHHHH----------HHHHH------H-HH--------------------------HHH-HHHHHH
Confidence 999885 456665544321 00000 0 00 000 000000
Q ss_pred hhhhHhhhhCCCCchhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHH
Q 000406 962 IQTVEEEQQKPRPRKFQLSEIWKLQRPEFAMIIFGFILGMHAGAILSIFPLILGQALQVYFDDTASTLRRDVRYLSLALV 1041 (1560)
Q Consensus 962 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 1041 (1560)
.+.... |
T Consensus 260 -----------------~~~~~~------------------------------------~-------------------- 266 (530)
T COG0488 260 -----------------LAKEQE------------------------------------W-------------------- 266 (530)
T ss_pred -----------------HHHHHH------------------------------------H--------------------
Confidence 000000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccCChHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 000406 1042 GLGFGCIIFMTGQQGFCGWAGTKLTMRVRELLFRSILKQEPGWFDFEENSTGVLVSRLSIDSISFRSVLGDRFSVLLMGL 1121 (1560)
Q Consensus 1042 ~l~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~ll~~~~~ffd~~~~~~G~il~R~s~Di~~i~~~l~~~l~~~l~~~ 1121 (1560)
+.|+..
T Consensus 267 ------------------------------------------------------i~r~~~-------------------- 272 (530)
T COG0488 267 ------------------------------------------------------IRRGKA-------------------- 272 (530)
T ss_pred ------------------------------------------------------HHHHHh--------------------
Confidence 000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHhcchhHHHhccchHHHHHHHH
Q 000406 1122 SSAAVGLGVSLVLNWRLTLVAAALTPFTLGASYLSLIINVGPKIDNSSYAKASSIASGAVSNIRTVTTFSAQEQIINSFD 1201 (1560)
Q Consensus 1122 ~~~i~~l~~~~~~~~~l~lv~l~~ipl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~e~~~~~~~~ 1201 (1560)
...+.. ..+...++
T Consensus 273 --------------------------------------~~~~~k--------------------------~a~sr~k~-- 286 (530)
T COG0488 273 --------------------------------------AASKAK--------------------------KAKSRIKR-- 286 (530)
T ss_pred --------------------------------------ccchHH--------------------------HHHHHHHH--
Confidence 000000 00000000
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 000406 1202 KALSEPKKKSVKRSQILGLTLGFSQGAMYVAYTFTLWFGAYLVKQGHASFGVVYKIFLILVLSSFSVGQLAGLAPDTSMA 1281 (1560)
Q Consensus 1202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~i~~l~~~~~~~~~~ 1281 (1560)
T Consensus 287 -------------------------------------------------------------------------------- 286 (530)
T COG0488 287 -------------------------------------------------------------------------------- 286 (530)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHH-hccCCcc-cc-c--cccccC-CCCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCH
Q 000406 1282 ATAIPAVLQI-TKRKPLI-DN-V--KGRKLE-RSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGK 1355 (1560)
Q Consensus 1282 ~~s~~ri~~i-~~~~~~~-~~-~--~~~~~~-~~~~~~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGK 1355 (1560)
++++.+- ....+.. .. . .-.... ...+.-++++||+++|++. +++++++||.|.+|++||||||||+||
T Consensus 287 ---l~k~~~~~~~~~~~~~~~~~~~~f~~~~~~~g~~vl~~~~~~~~y~~~--~~l~~~~s~~i~~g~riaiiG~NG~GK 361 (530)
T COG0488 287 ---LEKLEARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGG--RLLLKDLSFRIDRGDRIAIVGPNGAGK 361 (530)
T ss_pred ---HHHHHhhhhhcccccccccceeeccCCcccCCCeeEEEeccccccCCC--ceeecCceEEecCCCEEEEECCCCCCH
Confidence 0111100 0000000 00 0 000011 1223459999999999643 469999999999999999999999999
Q ss_pred HHHHHHHhcccCCCccEEEECCEecCCCCHHHHhhceEEEcCCC-CCC-CccHHHHHhcCCCCCCHHHHHHHHHHHhHHH
Q 000406 1356 STVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQEP-ALF-AGTIRDNIALGNPKASWAEIEEAAEEAYIHK 1433 (1560)
Q Consensus 1356 STLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~~I~~VpQdp-~LF-~gTIreNL~~g~~~~sd~eI~~al~~a~l~~ 1433 (1560)
|||+++|+|-..|.+|+|.++-. -++||.+|+. .++ +.|+-|++.-..|+..+.++...|...++..
T Consensus 362 STLlk~l~g~~~~~~G~v~~g~~-----------v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~ 430 (530)
T COG0488 362 STLLKLLAGELGPLSGTVKVGET-----------VKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTG 430 (530)
T ss_pred HHHHHHHhhhcccCCceEEeCCc-----------eEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCCh
Confidence 99999999999999999998632 2589999998 444 3489999987666655777877777766542
Q ss_pred HHHhCCCCccccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHH
Q 000406 1434 FISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLST 1513 (1560)
Q Consensus 1434 ~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlst 1513 (1560)
+...++|+ .||||||-|+.||+.++.+|.+|||||||.+||.+|...+.++|.+. ..|||+|||+...
T Consensus 431 ------~~~~~~v~----~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f--~Gtvl~VSHDr~F 498 (530)
T COG0488 431 ------EDQEKPVG----VLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF--EGTVLLVSHDRYF 498 (530)
T ss_pred ------HHHhCchh----hcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC--CCeEEEEeCCHHH
Confidence 22344554 69999999999999999999999999999999999999999999875 4699999999999
Q ss_pred Hhh-cCEEEEEeCCEEEEe-cCHHHHHh
Q 000406 1514 IRE-ANMIAVVRDGAVVEY-GSHETLLA 1539 (1560)
Q Consensus 1514 i~~-aDrIlVLd~G~IvE~-Gt~~eLl~ 1539 (1560)
+.. |++|+++++ ++.++ |.+++.++
T Consensus 499 l~~va~~i~~~~~-~~~~~~g~y~~y~~ 525 (530)
T COG0488 499 LDRVATRIWLVED-KVEEFEGGYEDYLE 525 (530)
T ss_pred HHhhcceEEEEcC-ceeEcCCCHHHHHH
Confidence 987 999999999 88887 89988876
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-51 Score=470.59 Aligned_cols=237 Identities=28% Similarity=0.438 Sum_probs=223.7
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhhce
Q 000406 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQT 1392 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~~I 1392 (1560)
.|+|+||+++|+.. ..++|+||||+|++||++||+|+||||||||+++|+|+++ .+|+|.|||+++..++...+|++|
T Consensus 2 ~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 2 QMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred eEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence 58999999999743 3469999999999999999999999999999999999998 789999999999999999999999
Q ss_pred EEEcCCCCCCCccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHccCCC
Q 000406 1393 ALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSR 1472 (1560)
Q Consensus 1393 ~~VpQdp~LF~gTIreNL~~g~~~~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLARALLr~p~ 1472 (1560)
+||||+|.+|++|+++||++.. ..++++++++++.+++.+++..+|.+|++.++++|.+||||||||+||||||+++|+
T Consensus 80 ~~v~q~~~lf~~tv~~nl~~~~-~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~ 158 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNLDPYG-KWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAK 158 (275)
T ss_pred EEECCCcccchhhHHHHhhhcc-CCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999998643 356789999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHHHhhcCEEEEEeCCEEEEecCHHHHHhhccChHHHHHHHH
Q 000406 1473 VLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETLLASHLNGVYASLVRA 1552 (1560)
Q Consensus 1473 ILILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlsti~~aDrIlVLd~G~IvE~Gt~~eLl~~~~~g~y~~l~~~ 1552 (1560)
||||||||++||+.+++.+++.|++.+.++|+|+||||++++..||||+||++|+|++.|+|++|++ ..+.|++++..
T Consensus 159 illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~--~~~~~~~~~~~ 236 (275)
T cd03289 159 ILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLN--EKSHFKQAISP 236 (275)
T ss_pred EEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhh--CcHHHHHHHhh
Confidence 9999999999999999999999998888899999999999999999999999999999999999998 46889999977
Q ss_pred hh
Q 000406 1553 ET 1554 (1560)
Q Consensus 1553 q~ 1554 (1560)
..
T Consensus 237 ~~ 238 (275)
T cd03289 237 SD 238 (275)
T ss_pred cc
Confidence 64
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-49 Score=417.89 Aligned_cols=218 Identities=32% Similarity=0.573 Sum_probs=190.4
Q ss_pred cEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecC-CccHHHHhcc
Q 000406 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLK-SLQVKWLRTQ 750 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~-~~~~~~lr~~ 750 (1560)
.|+++||+++|+. ..||+||||+|++||+++||||||||||||+++|.|+.+|++|+|.+||.++. ..+...+|++
T Consensus 2 mi~i~~l~K~fg~---~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 2 MIEIKNLSKSFGD---KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred eEEEEeeeEEeCC---eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence 4899999999973 56999999999999999999999999999999999999999999999998774 3377889999
Q ss_pred EEEEecCCcCccc-cHHHHHhcCCCC---CCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHHh
Q 000406 751 IGMVGQEPILFAT-SILENVLMGKEN---ATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAM 826 (1560)
Q Consensus 751 i~~v~Q~~~lf~~-Tv~eNi~~g~~~---~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARAl 826 (1560)
+|+|+|+..||+. ||.||+.++.-. .+.++..+. +.+.++.. |+....+..+.+|||||||||||||||
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~-----A~~lL~~V--GL~~ka~~yP~qLSGGQqQRVAIARAL 151 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREK-----ALELLEKV--GLADKADAYPAQLSGGQQQRVAIARAL 151 (240)
T ss_pred cCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHH-----HHHHHHHc--CchhhhhhCccccCcHHHHHHHHHHHH
Confidence 9999999999987 999999987421 122222211 12334443 666667778889999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhHhhh
Q 000406 827 IKDPRILLLDEPTSALDSESESIVQQAIDKIS-VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLER 899 (1560)
Q Consensus 827 ~~~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l~~~ 899 (1560)
..+|+++|+|||||||||+....+.+.++++. .|.|.|+|||.+.+++. ||||+.|++|+|+++|+|+++..+
T Consensus 152 aM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~ 226 (240)
T COG1126 152 AMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDN 226 (240)
T ss_pred cCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcC
Confidence 99999999999999999999999999999984 59999999999999988 999999999999999999998764
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-47 Score=406.10 Aligned_cols=223 Identities=33% Similarity=0.496 Sum_probs=193.6
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecC-CCCHHHHhhc
Q 000406 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLR-EINVKWLRKQ 1391 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~-~i~l~~LR~~ 1391 (1560)
-|+++||+.+|.. ..||+|||++|++||+++|+||||||||||+++|.++.+|++|+|.|||.++. +.+...+|++
T Consensus 2 mi~i~~l~K~fg~---~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 2 MIEIKNLSKSFGD---KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred eEEEEeeeEEeCC---eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence 3899999999963 46999999999999999999999999999999999999999999999998774 3378899999
Q ss_pred eEEEcCCCCCCC-ccHHHHHhcCC---CCCCHHH----HHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 000406 1392 TALVGQEPALFA-GTIRDNIALGN---PKASWAE----IEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAI 1463 (1560)
Q Consensus 1392 I~~VpQdp~LF~-gTIreNL~~g~---~~~sd~e----I~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaL 1463 (1560)
+|+|+|...||+ -|+.||+.++- ...+.+| -.+.|++++|.+.....| .+||||||||+||
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-----------~qLSGGQqQRVAI 147 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYP-----------AQLSGGQQQRVAI 147 (240)
T ss_pred cCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCc-----------cccCcHHHHHHHH
Confidence 999999999997 59999999862 1233333 345667777777666665 4799999999999
Q ss_pred HHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHHHhhc
Q 000406 1464 ARAILKGSRVLLLDEASSALDLESEKHVQDALRKVS-KRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLASH 1541 (1560)
Q Consensus 1464 ARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~-~~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eLl~~~ 1541 (1560)
||||..+|+|+++|||||+|||+.-..+.+.++++. +|.|.|+|||.+..+++ ||||+.||+|+|+|.|+|+++..+.
T Consensus 148 ARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p 227 (240)
T COG1126 148 ARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNP 227 (240)
T ss_pred HHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCC
Confidence 999999999999999999999999999999999976 46799999999999988 9999999999999999999999854
Q ss_pred cChHHHHH
Q 000406 1542 LNGVYASL 1549 (1560)
Q Consensus 1542 ~~g~y~~l 1549 (1560)
++..-.++
T Consensus 228 ~~~R~~~F 235 (240)
T COG1126 228 KSERTRQF 235 (240)
T ss_pred CCHHHHHH
Confidence 33333333
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-46 Score=444.65 Aligned_cols=230 Identities=29% Similarity=0.433 Sum_probs=199.3
Q ss_pred CCCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccC-----CCccEEEECCEecC-
Q 000406 1308 RSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYD-----PNQGKVMIEGVDLR- 1381 (1560)
Q Consensus 1308 ~~~~~~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~-----p~~G~I~IdGvdi~- 1381 (1560)
|+..+.|+|+||+++|+.. ..++|+||||+|++||++||+|+||||||||+++|+|+++ |++|+|.|||+++.
T Consensus 75 ~~~~~~i~~~nls~~y~~~-~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~ 153 (329)
T PRK14257 75 FNHANVFEIRNFNFWYMNR-TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRS 153 (329)
T ss_pred CCcCceEEEEeeEEEecCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence 5556679999999999643 3469999999999999999999999999999999999997 57999999999997
Q ss_pred -CCCHHHHhhceEEEcCCCCCCCccHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHH
Q 000406 1382 -EINVKWLRKQTALVGQEPALFAGTIRDNIALGNP--KASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQK 1458 (1560)
Q Consensus 1382 -~i~l~~LR~~I~~VpQdp~LF~gTIreNL~~g~~--~~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQr 1458 (1560)
.+++..+|+.++||||+|.+|++||+|||+++.. ..++++.++......++.+ .++.++++.+++.|.+||||||
T Consensus 154 ~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~--~L~~~l~~~~~~~~~~LSgGqk 231 (329)
T PRK14257 154 KKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSA--ALWDEVKDDLDKAGNALSGGQQ 231 (329)
T ss_pred cccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHc--CCcchhhhhhhCCcccCCHHHH
Confidence 4566788999999999999999999999997521 2344444433222222211 1445677889999999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHH
Q 000406 1459 QRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETL 1537 (1560)
Q Consensus 1459 QRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eL 1537 (1560)
|||||||||+++|+||||||||++||+.+.+.+++.|+++.+++|+|+|||+++++.. ||||+||++|+|+|.|+++++
T Consensus 232 qRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l 311 (329)
T PRK14257 232 QRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTI 311 (329)
T ss_pred HHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999999889999999999999988 999999999999999999999
Q ss_pred Hhh
Q 000406 1538 LAS 1540 (1560)
Q Consensus 1538 l~~ 1540 (1560)
...
T Consensus 312 ~~~ 314 (329)
T PRK14257 312 FIH 314 (329)
T ss_pred hcC
Confidence 873
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-47 Score=420.82 Aligned_cols=221 Identities=36% Similarity=0.557 Sum_probs=191.4
Q ss_pred EEEEEEEEEcCCC--CCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccH---HHH
Q 000406 673 IEFKGVTFAYPSR--PETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQV---KWL 747 (1560)
Q Consensus 673 i~~~~vs~~y~~~--~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~---~~l 747 (1560)
|++++|++.|+.. +...+|+||||+|++||+.+|+|+||+|||||++++.++..|++|+|.+||.|+..++. ..+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 8999999999852 23569999999999999999999999999999999999999999999999999987764 456
Q ss_pred hccEEEEecCCcCcc-ccHHHHHhcCCCCCC--HHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHH
Q 000406 748 RTQIGMVGQEPILFA-TSILENVLMGKENAT--MKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALAR 824 (1560)
Q Consensus 748 r~~i~~v~Q~~~lf~-~Tv~eNi~~g~~~~~--~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialAR 824 (1560)
|++||++||++.|++ .||.+||+|+.+-.. .+++. .+...+.++ .|+....+..+.+|||||||||+|||
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~--~RV~elLel-----VgL~dk~~~yP~qLSGGQKQRVaIAR 154 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIK--QRVAELLEL-----VGLSDKADRYPAQLSGGQKQRVAIAR 154 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHH--HHHHHHHHH-----cCChhhhccCchhcCcchhhHHHHHH
Confidence 789999999999998 599999999865332 22322 122222222 26667778888999999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhHhhhc
Q 000406 825 AMIKDPRILLLDEPTSALDSESESIVQQAIDKIS--VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLERG 900 (1560)
Q Consensus 825 Al~~~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l~~~~ 900 (1560)
||+.+|+|||+|||||||||+|.+.|.+.|+++. -|-|+++|||.++.++. ||||.||++|+++|.|+..++...+
T Consensus 155 ALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~~P 233 (339)
T COG1135 155 ALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFANP 233 (339)
T ss_pred HHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhhcCc
Confidence 9999999999999999999999999999998873 48999999999999988 9999999999999999999987643
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-46 Score=416.75 Aligned_cols=229 Identities=31% Similarity=0.504 Sum_probs=196.8
Q ss_pred EEEEEEEEEcCCC--CCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCC---HHHH
Q 000406 1314 IELKMVTFTYPSR--PEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREIN---VKWL 1388 (1560)
Q Consensus 1314 I~~~nVsf~Y~~~--~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~---l~~L 1388 (1560)
|++++|++.|+.. ....+|+||||+|++||+.||+|+||||||||++++.++-+|++|+|.+||.|+..++ +..+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 7999999999853 1246999999999999999999999999999999999999999999999999988886 5566
Q ss_pred hhceEEEcCCCCCCC-ccHHHHHhcCCC--CCCHHH----HHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 000406 1389 RKQTALVGQEPALFA-GTIRDNIALGNP--KASWAE----IEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRI 1461 (1560)
Q Consensus 1389 R~~I~~VpQdp~LF~-gTIreNL~~g~~--~~sd~e----I~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRL 1461 (1560)
|++||+|+|++.|++ .||.+|+.|... ..+.+| +.+.|+.++|.|.-... ..+||||||||+
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~y-----------P~qLSGGQKQRV 150 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRY-----------PAQLSGGQKQRV 150 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccC-----------chhcCcchhhHH
Confidence 889999999999997 799999998632 233443 45666666666555444 458999999999
Q ss_pred HHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHHH
Q 000406 1462 AIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSK--RATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLL 1538 (1560)
Q Consensus 1462 aLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~--~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eLl 1538 (1560)
+|||||..+|+||+.|||||+|||+|.+.|.+.|++..+ |-|+++|||-++.+++ |||++||++|+|+|.|+-.++.
T Consensus 151 aIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 151 AIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 999999999999999999999999999999999987653 6799999999999988 9999999999999999999999
Q ss_pred hhccChHHHHHHHHh
Q 000406 1539 ASHLNGVYASLVRAE 1553 (1560)
Q Consensus 1539 ~~~~~g~y~~l~~~q 1553 (1560)
.+.+...=.+++.+.
T Consensus 231 ~~Pk~~~t~~fi~~~ 245 (339)
T COG1135 231 ANPKHAITQEFIGET 245 (339)
T ss_pred cCcchHHHHHHHHhh
Confidence 855455555665543
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-46 Score=431.43 Aligned_cols=236 Identities=24% Similarity=0.426 Sum_probs=218.7
Q ss_pred ccEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHHHhcc
Q 000406 671 GKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQ 750 (1560)
Q Consensus 671 g~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~ 750 (1560)
|.|+++|++++|+.. ..++|+|+||+|++||+++|+|+||||||||+++|+|+++ ++|+|.+||.++..++...+|++
T Consensus 1 g~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~ 78 (275)
T cd03289 1 GQMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKA 78 (275)
T ss_pred CeEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhh
Confidence 469999999999642 3468999999999999999999999999999999999998 79999999999999998899999
Q ss_pred EEEEecCCcCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHHhccCC
Q 000406 751 IGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDP 830 (1560)
Q Consensus 751 i~~v~Q~~~lf~~Tv~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARAl~~~p 830 (1560)
|+||||+|.+|++|+++|+.+..+ .++++++++++.+++.+++..+|.++++.++++|.+||||||||++|||||+++|
T Consensus 79 i~~v~q~~~lf~~tv~~nl~~~~~-~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p 157 (275)
T cd03289 79 FGVIPQKVFIFSGTFRKNLDPYGK-WSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKA 157 (275)
T ss_pred EEEECCCcccchhhHHHHhhhccC-CCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999974332 3567888999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCccccccCCEEEEEeCCeEEEecChhhHhhhcchHHHHHHH
Q 000406 831 RILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLERGGAYHDLVKL 909 (1560)
Q Consensus 831 ~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~D~i~vl~~G~iv~~G~~~~l~~~~~~~~~l~~~ 909 (1560)
+||||||||++||+.+++.+++.|++..+++|+|+||||++++..||||++|++|++++.|+|+++++..+.|++++..
T Consensus 158 ~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~ 236 (275)
T cd03289 158 KILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQAISP 236 (275)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhCcHHHHHHHhh
Confidence 9999999999999999999999999887799999999999999889999999999999999999999877777777653
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-46 Score=433.73 Aligned_cols=200 Identities=27% Similarity=0.372 Sum_probs=166.2
Q ss_pred ccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhhc
Q 000406 1312 LGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQ 1391 (1560)
Q Consensus 1312 ~~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~~ 1391 (1560)
.-|-++||+|.|++++ .++++++|-|..+++||+|||||+|||||++++.|.+.|+.|.|.-.-.. +
T Consensus 388 pvi~~~nv~F~y~~~~--~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~-----------~ 454 (614)
T KOG0927|consen 388 PVIMVQNVSFGYSDNP--MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHN-----------K 454 (614)
T ss_pred CeEEEeccccCCCCcc--hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccc-----------c
Confidence 3599999999998653 69999999999999999999999999999999999999999988764221 2
Q ss_pred eEEEcC---CCCCCCccHHHHHhcCCCC-CCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHH
Q 000406 1392 TALVGQ---EPALFAGTIRDNIALGNPK-ASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAI 1467 (1560)
Q Consensus 1392 I~~VpQ---dp~LF~gTIreNL~~g~~~-~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLARAL 1467 (1560)
+++.-| +...++-|.-|++..-.++ -..+++...+.+.++..... +.++. +||+|||.||++||.+
T Consensus 455 ~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q------~~p~~----~LS~Gqr~rVlFa~l~ 524 (614)
T KOG0927|consen 455 LPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQ------VVPMS----QLSDGQRRRVLFARLA 524 (614)
T ss_pred chhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCcccc------ccchh----hcccccchhHHHHHHH
Confidence 222233 3345678888998876553 56688888888888874333 33343 7999999999999999
Q ss_pred ccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHHHhh-cCEEEEEeCCEEEEe-cCHHH
Q 000406 1468 LKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEY-GSHET 1536 (1560)
Q Consensus 1468 Lr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~-Gt~~e 1536 (1560)
+++|.||||||||++||.+|-..+.++|.+. ..+||+|||+...|.. +++|.+.+||.+... |....
T Consensus 525 ~kqP~lLlLDEPtnhLDi~tid~laeaiNe~--~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i~~ 593 (614)
T KOG0927|consen 525 VKQPHLLLLDEPTNHLDIETIDALAEAINEF--PGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDIEI 593 (614)
T ss_pred hcCCcEEEecCCCcCCCchhHHHHHHHHhcc--CCceeeeechhhHHHHHHHHhHhhccCceeecCccHHH
Confidence 9999999999999999999999999999875 4689999999999988 999999999998875 55433
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-46 Score=393.76 Aligned_cols=219 Identities=32% Similarity=0.491 Sum_probs=197.3
Q ss_pred ccEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCc-----cEEEECCeecCC--cc
Q 000406 671 GKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTK-----GLITLDGHDLKS--LQ 743 (1560)
Q Consensus 671 g~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~-----G~I~i~g~~i~~--~~ 743 (1560)
..++++|+++.|+. ..+|+|||++|++++++|++|||||||||||+++.|+.+... |+|.++|++|.+ ++
T Consensus 6 ~~~~~~~l~~yYg~---~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d 82 (253)
T COG1117 6 PAIEVRDLNLYYGD---KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD 82 (253)
T ss_pred ceeEecceeEEECc---hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCC
Confidence 36899999999973 569999999999999999999999999999999999998765 999999999965 57
Q ss_pred HHHHhccEEEEecCCcCccccHHHHHhcCCCCC------CHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHH
Q 000406 744 VKWLRTQIGMVGQEPILFATSILENVLMGKENA------TMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQK 817 (1560)
Q Consensus 744 ~~~lr~~i~~v~Q~~~lf~~Tv~eNi~~g~~~~------~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQr 817 (1560)
...+|++||+|+|.|.-|+.||+|||.+|.... -++.+.++++.+.+|+-++. .+.+.+..|||||+
T Consensus 83 ~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-------rL~~sa~~LSGGQQ 155 (253)
T COG1117 83 VVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-------RLHKSALGLSGGQQ 155 (253)
T ss_pred HHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-------HhhCCccCCChhHH
Confidence 889999999999999999999999999984321 13446778889999887653 34567788999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhH
Q 000406 818 QRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQL 896 (1560)
Q Consensus 818 QRialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l 896 (1560)
||+||||||.-+|+|||||||||||||.+...|.+.|.++.++.|||+|||.+..+.+ +|+..++-.|+++|.|+.+++
T Consensus 156 QRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~i 235 (253)
T COG1117 156 QRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKI 235 (253)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhh
Confidence 9999999999999999999999999999999999999999999999999999999876 999999999999999999988
Q ss_pred hhh
Q 000406 897 LER 899 (1560)
Q Consensus 897 ~~~ 899 (1560)
..+
T Consensus 236 F~~ 238 (253)
T COG1117 236 FTN 238 (253)
T ss_pred hcC
Confidence 754
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-46 Score=401.53 Aligned_cols=218 Identities=33% Similarity=0.535 Sum_probs=190.4
Q ss_pred EEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHHHhccEE
Q 000406 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIG 752 (1560)
Q Consensus 673 i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~ 752 (1560)
|+|+|||+.|. +..+++|+||+|++||+++++|||||||||++++|.|+++|++|+|++||+++++++...||++||
T Consensus 2 I~~~nvsk~y~---~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 2 IEFENVSKRYG---NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred ceeeeeehhcC---CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh
Confidence 79999999997 356999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCcCccc-cHHHHHhcCCCC--CCHHHHHHHHHHhhhHHHHHhCCCCCCc--ccCCCCCCCChHHHHHHHHHHHhc
Q 000406 753 MVGQEPILFAT-SILENVLMGKEN--ATMKEAVAACKAASAHSFISELPLGYDT--QVGDRGTQLSGGQKQRIALARAMI 827 (1560)
Q Consensus 753 ~v~Q~~~lf~~-Tv~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~gl~t--~~~~~g~~LSgGQrQRialARAl~ 827 (1560)
||-|...||+. ||.|||.+-..- .+.+++.+ .+.+.+..+ |++- ...+.+.+|||||+|||.+||||+
T Consensus 79 YviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~-----r~~ELl~lv--gL~p~~~~~RyP~eLSGGQQQRVGv~RALA 151 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATVPKLLGWDKERIKK-----RADELLDLV--GLDPSEYADRYPHELSGGQQQRVGVARALA 151 (309)
T ss_pred hhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHH-----HHHHHHHHh--CCCHHHHhhcCchhcCcchhhHHHHHHHHh
Confidence 99999999986 999999874321 12233222 122333332 5543 456778999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhHhhhc
Q 000406 828 KDPRILLLDEPTSALDSESESIVQQAIDKISV--GRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLERG 900 (1560)
Q Consensus 828 ~~p~illLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l~~~~ 900 (1560)
.+|+|||||||++||||.++..+++.+.++.+ ++|+|+||||++++.. +|||.+|++|+|+..++|++++.+.
T Consensus 152 adP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~P 227 (309)
T COG1125 152 ADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANP 227 (309)
T ss_pred cCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCc
Confidence 99999999999999999999999999988743 8999999999998755 9999999999999999999998753
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-44 Score=412.36 Aligned_cols=236 Identities=49% Similarity=0.776 Sum_probs=217.7
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhhceE
Q 000406 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTA 1393 (1560)
Q Consensus 1314 I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~~I~ 1393 (1560)
|+++||+++|+.. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+...+|+.++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKPD-GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCCC-CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 5789999999642 246999999999999999999999999999999999999999999999999998888888899999
Q ss_pred EEcCCCCCCCccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 000406 1394 LVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRV 1473 (1560)
Q Consensus 1394 ~VpQdp~LF~gTIreNL~~g~~~~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLARALLr~p~I 1473 (1560)
|+||++.+|+.|++|||.++.+..+.+++.++++..++.+++..+|.|+++.....+.+||||||||++|||||+.+|++
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l 159 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRI 159 (237)
T ss_pred EEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence 99999999999999999986554556677888888899999999999999999999999999999999999999999999
Q ss_pred EEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHHHhhcCEEEEEeCCEEEEecCHHHHHhhccChHHHHHHHH
Q 000406 1474 LLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETLLASHLNGVYASLVRA 1552 (1560)
Q Consensus 1474 LILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlsti~~aDrIlVLd~G~IvE~Gt~~eLl~~~~~g~y~~l~~~ 1552 (1560)
|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+..||+|++|++|++++.|+++++++ ..+.|..+++.
T Consensus 160 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~--~~~~~~~~~~~ 236 (237)
T cd03252 160 LIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLA--ENGLYAYLYQL 236 (237)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHh--ccChHHHHHhc
Confidence 999999999999999999999999877899999999999998899999999999999999999997 46778877653
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-45 Score=385.27 Aligned_cols=219 Identities=31% Similarity=0.493 Sum_probs=198.0
Q ss_pred ccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCc-----cEEEECCEecCC--CC
Q 000406 1312 LGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQ-----GKVMIEGVDLRE--IN 1384 (1560)
Q Consensus 1312 ~~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~-----G~I~IdGvdi~~--i~ 1384 (1560)
..++++||++-|. +..+|+|||++|++++.+|++|||||||||++++|.|+.+... |+|.++|.||-+ ++
T Consensus 6 ~~~~~~~l~~yYg---~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d 82 (253)
T COG1117 6 PAIEVRDLNLYYG---DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD 82 (253)
T ss_pred ceeEecceeEEEC---chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCC
Confidence 3589999999996 3469999999999999999999999999999999999999875 999999999976 47
Q ss_pred HHHHhhceEEEcCCCCCCCccHHHHHhcCCC------CCCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHH
Q 000406 1385 VKWLRKQTALVGQEPALFAGTIRDNIALGNP------KASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQK 1458 (1560)
Q Consensus 1385 l~~LR~~I~~VpQdp~LF~gTIreNL~~g~~------~~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQr 1458 (1560)
...||+++|+|+|.|.-|+.||.||+.+|-. ..-|+-++++|+.|.|++.+.. .| .+.+..|||||+
T Consensus 83 ~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD---rL----~~sa~~LSGGQQ 155 (253)
T COG1117 83 VVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD---RL----HKSALGLSGGQQ 155 (253)
T ss_pred HHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH---Hh----hCCccCCChhHH
Confidence 8899999999999999999999999999831 1224557899999999988754 23 356778999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHH
Q 000406 1459 QRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETL 1537 (1560)
Q Consensus 1459 QRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eL 1537 (1560)
|||||||||.-+|+|||||||||+|||.+...|.+.|.++.++-|||+|||.+.-... +|+...+-.|+++|+|+-+++
T Consensus 156 QRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~i 235 (253)
T COG1117 156 QRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKI 235 (253)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhh
Confidence 9999999999999999999999999999999999999999989999999999998766 999999999999999999999
Q ss_pred Hhh
Q 000406 1538 LAS 1540 (1560)
Q Consensus 1538 l~~ 1540 (1560)
..+
T Consensus 236 F~~ 238 (253)
T COG1117 236 FTN 238 (253)
T ss_pred hcC
Confidence 864
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=451.88 Aligned_cols=198 Identities=24% Similarity=0.362 Sum_probs=167.1
Q ss_pred CccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCC--CccEEEECCEecCCCCHHHHhhceEEEcCCC-CCCCc
Q 000406 1328 EVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDP--NQGKVMIEGVDLREINVKWLRKQTALVGQEP-ALFAG 1404 (1560)
Q Consensus 1328 ~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p--~~G~I~IdGvdi~~i~l~~LR~~I~~VpQdp-~LF~g 1404 (1560)
.+..|+||+=-++||-.+|++|+||||||||+++|++-..- .+|+|+|||.+..+ +..++.+|||-|++ |+-.-
T Consensus 803 ~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~~GYvqQ~DiH~~~~ 879 (1391)
T KOG0065|consen 803 TRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARVSGYVEQQDIHSPEL 879 (1391)
T ss_pred ceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccccceeecccccCccc
Confidence 45699999999999999999999999999999999998542 47999999998755 78999999999987 56667
Q ss_pred cHHHHHhcCC-----CCCCHHH----HHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHccCC-CEE
Q 000406 1405 TIRDNIALGN-----PKASWAE----IEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGS-RVL 1474 (1560)
Q Consensus 1405 TIreNL~~g~-----~~~sd~e----I~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLARALLr~p-~IL 1474 (1560)
||||-|.+.. .+.+++| ++++.+..+++++ -|..||..|..||..||.||.||=-|+.|| .||
T Consensus 880 TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~-------~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~il 952 (1391)
T KOG0065|consen 880 TVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEY-------ADALVGLPGSGLSTEQRKRLTIGVELVANPSSIL 952 (1391)
T ss_pred chHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhh-------hhhhccCCCCCCCHHHhceeeEEEEEecCCceeE
Confidence 9999998641 2344433 4455555544433 456789989999999999999999999999 899
Q ss_pred EEeCCCcCCCHHHHHHHHHHHHHhc-CCceEEEEecChHHH--hhcCEEEEEe-CCEEEEecCHH
Q 000406 1475 LLDEASSALDLESEKHVQDALRKVS-KRATTIVVAHRLSTI--REANMIAVVR-DGAVVEYGSHE 1535 (1560)
Q Consensus 1475 ILDEaTSaLD~~Te~~I~~~L~~~~-~~~TvI~IAHRlsti--~~aDrIlVLd-~G~IvE~Gt~~ 1535 (1560)
+||||||+||+++...|.+.+|++. .|+||+..-|.++.. +..|+++.|+ .|+.|-+|+..
T Consensus 953 FLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG 1017 (1391)
T KOG0065|consen 953 FLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLG 1017 (1391)
T ss_pred EecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcc
Confidence 9999999999999999999999875 689999999999863 5699999997 68999998753
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-44 Score=411.31 Aligned_cols=240 Identities=34% Similarity=0.530 Sum_probs=221.4
Q ss_pred CccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhh
Q 000406 1311 PLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRK 1390 (1560)
Q Consensus 1311 ~~~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~ 1390 (1560)
.+.|+++||+++|+.. ...+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|+
T Consensus 17 ~~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~ 95 (257)
T cd03288 17 GGEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS 95 (257)
T ss_pred CceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhh
Confidence 3569999999999642 246999999999999999999999999999999999999999999999999999999889999
Q ss_pred ceEEEcCCCCCCCccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHccC
Q 000406 1391 QTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKG 1470 (1560)
Q Consensus 1391 ~I~~VpQdp~LF~gTIreNL~~g~~~~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLARALLr~ 1470 (1560)
.++|++|+|.+|++|+++|+.+.. ....++++++++.+++.+++..+|.|+++.+++.+.+||+|||||++|||||+++
T Consensus 96 ~i~~v~q~~~l~~~tv~~nl~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~ 174 (257)
T cd03288 96 RLSIILQDPILFSGSIRFNLDPEC-KCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRK 174 (257)
T ss_pred hEEEECCCCcccccHHHHhcCcCC-CCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999998643 2345678889999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHHHhhcCEEEEEeCCEEEEecCHHHHHhhccChHHHHHH
Q 000406 1471 SRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETLLASHLNGVYASLV 1550 (1560)
Q Consensus 1471 p~ILILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlsti~~aDrIlVLd~G~IvE~Gt~~eLl~~~~~g~y~~l~ 1550 (1560)
|++|||||||++||+.+++.+.+.|++..+++|+|++||+++.+..||||++|++|+|++.|+++++++ ..++.|..++
T Consensus 175 p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~ 253 (257)
T cd03288 175 SSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLA-QEDGVFASLV 253 (257)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHh-ccchHHHHHH
Confidence 999999999999999999999999998777899999999999999999999999999999999999987 3577888887
Q ss_pred HHh
Q 000406 1551 RAE 1553 (1560)
Q Consensus 1551 ~~q 1553 (1560)
..+
T Consensus 254 ~~~ 256 (257)
T cd03288 254 RTD 256 (257)
T ss_pred hcc
Confidence 654
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-44 Score=388.86 Aligned_cols=217 Identities=31% Similarity=0.539 Sum_probs=192.2
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhhceE
Q 000406 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTA 1393 (1560)
Q Consensus 1314 I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~~I~ 1393 (1560)
|+|+|||++|. +..+++|+||+|++||.+.++|||||||||+++++.|+++|++|+|+|||.|+++++...||++||
T Consensus 2 I~~~nvsk~y~---~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 2 IEFENVSKRYG---NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred ceeeeeehhcC---CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh
Confidence 79999999996 346999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCCC-ccHHHHHhcCCCC---CC----HHHHHHHHHHHhHH--HHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 000406 1394 LVGQEPALFA-GTIRDNIALGNPK---AS----WAEIEEAAEEAYIH--KFISSLPQGYETQVGESGVQLSGGQKQRIAI 1463 (1560)
Q Consensus 1394 ~VpQdp~LF~-gTIreNL~~g~~~---~s----d~eI~~al~~a~l~--~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaL 1463 (1560)
||-|..-||+ .||.|||..- |. -+ ++++.+.++.++|. +|....| ..|||||+||+.+
T Consensus 79 YviQqigLFPh~Tv~eNIa~V-P~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP-----------~eLSGGQQQRVGv 146 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATV-PKLLGWDKERIKKRADELLDLVGLDPSEYADRYP-----------HELSGGQQQRVGV 146 (309)
T ss_pred hhhhhcccCCCccHHHHHHhh-hhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCc-----------hhcCcchhhHHHH
Confidence 9999999996 5999999863 21 22 34456667777774 3555555 4799999999999
Q ss_pred HHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CceEEEEecChHHH-hhcCEEEEEeCCEEEEecCHHHHHhh
Q 000406 1464 ARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSK--RATTIVVAHRLSTI-REANMIAVVRDGAVVEYGSHETLLAS 1540 (1560)
Q Consensus 1464 ARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~--~~TvI~IAHRlsti-~~aDrIlVLd~G~IvE~Gt~~eLl~~ 1540 (1560)
||||..+|+||+||||.++||+.|...+|+-+.++.+ ++|+|+|||+++.. +-+|||.||++|+|+.+|+|++++++
T Consensus 147 ~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~ 226 (309)
T COG1125 147 ARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILAN 226 (309)
T ss_pred HHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999987654 68999999999986 55999999999999999999999985
Q ss_pred ccChHH
Q 000406 1541 HLNGVY 1546 (1560)
Q Consensus 1541 ~~~g~y 1546 (1560)
....|
T Consensus 227 -Pan~F 231 (309)
T COG1125 227 -PANDF 231 (309)
T ss_pred -ccHHH
Confidence 44444
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-44 Score=423.58 Aligned_cols=224 Identities=32% Similarity=0.495 Sum_probs=194.0
Q ss_pred CCcccEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCC-----CCccEEEECCeecC--
Q 000406 668 SVSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYD-----PTKGLITLDGHDLK-- 740 (1560)
Q Consensus 668 ~~~g~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~-----~~~G~I~i~g~~i~-- 740 (1560)
+..+.|+++|++++|+.. ..++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||+++.
T Consensus 76 ~~~~~i~~~nls~~y~~~-~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~ 154 (329)
T PRK14257 76 NHANVFEIRNFNFWYMNR-TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSK 154 (329)
T ss_pred CcCceEEEEeeEEEecCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccc
Confidence 455789999999999642 3469999999999999999999999999999999999996 57999999999997
Q ss_pred CccHHHHhccEEEEecCCcCccccHHHHHhcCCCC--CCHHHH-----HHHHHHhhhHHHHHhCCCCCCcccCCCCCCCC
Q 000406 741 SLQVKWLRTQIGMVGQEPILFATSILENVLMGKEN--ATMKEA-----VAACKAASAHSFISELPLGYDTQVGDRGTQLS 813 (1560)
Q Consensus 741 ~~~~~~lr~~i~~v~Q~~~lf~~Tv~eNi~~g~~~--~~~~~~-----~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LS 813 (1560)
..+...+|++++||||+|++|++||+|||.++... .++++. ..+++.++ ++.++++.+++++.+||
T Consensus 155 ~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~-------L~~~l~~~~~~~~~~LS 227 (329)
T PRK14257 155 KISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAA-------LWDEVKDDLDKAGNALS 227 (329)
T ss_pred ccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcC-------CcchhhhhhhCCcccCC
Confidence 34556788999999999999999999999976421 222332 22233333 33456678899999999
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCcccccc-CCEEEEEeCCeEEEecC
Q 000406 814 GGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGN 892 (1560)
Q Consensus 814 gGQrQRialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~ 892 (1560)
|||||||||||||+++|+||||||||++||+++...++++|+++.+++|+|+|||+++++.. ||||+||++|+|++.|+
T Consensus 228 gGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~ 307 (329)
T PRK14257 228 GGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGE 307 (329)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999998888999999999999987 99999999999999999
Q ss_pred hhhHhhh
Q 000406 893 HRQLLER 899 (1560)
Q Consensus 893 ~~~l~~~ 899 (1560)
++++...
T Consensus 308 ~~~l~~~ 314 (329)
T PRK14257 308 TKTIFIH 314 (329)
T ss_pred HHHHhcC
Confidence 9998753
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-43 Score=399.63 Aligned_cols=233 Identities=55% Similarity=0.846 Sum_probs=213.9
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhhceE
Q 000406 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTA 1393 (1560)
Q Consensus 1314 I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~~I~ 1393 (1560)
|+++|++++|++. ..++|+|+||++++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+...+|+.++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 5789999999643 235999999999999999999999999999999999999999999999999998888888899999
Q ss_pred EEcCCCCCCCccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 000406 1394 LVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRV 1473 (1560)
Q Consensus 1394 ~VpQdp~LF~gTIreNL~~g~~~~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLARALLr~p~I 1473 (1560)
|+||++.+|+.|++||+.++......+++.+.++..++.+++..+|.|+++.++.....||||||||++|||||+++|++
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 159 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPI 159 (234)
T ss_pred EeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999987555556777788888899999999999999999999999999999999999999999999
Q ss_pred EEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHHHhhcCEEEEEeCCEEEEecCHHHHHhhccChHHHHH
Q 000406 1474 LLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETLLASHLNGVYASL 1549 (1560)
Q Consensus 1474 LILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlsti~~aDrIlVLd~G~IvE~Gt~~eLl~~~~~g~y~~l 1549 (1560)
|||||||++||+.+...+.+.|++..+++|+|++||+++.+..||+|++|++|++++.|+++++.+ ..+.|..+
T Consensus 160 llLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~--~~~~~~~~ 233 (234)
T cd03251 160 LILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLA--QGGVYAKL 233 (234)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHH--cCcchhhh
Confidence 999999999999999999999999878899999999999998899999999999999999999987 35555543
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-43 Score=399.11 Aligned_cols=235 Identities=52% Similarity=0.791 Sum_probs=217.4
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhhceE
Q 000406 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTA 1393 (1560)
Q Consensus 1314 I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~~I~ 1393 (1560)
|+++|++++|+.. ..+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+...+|+.++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDPG--RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCCC--CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 5789999999632 35999999999999999999999999999999999999999999999999999988888999999
Q ss_pred EEcCCCCCCCccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 000406 1394 LVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRV 1473 (1560)
Q Consensus 1394 ~VpQdp~LF~gTIreNL~~g~~~~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLARALLr~p~I 1473 (1560)
|+||++.+|++|++||+.++....+++++.++++.+++.+.+..+|.|+++.+.....+||||||||++|||||+++|++
T Consensus 79 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~l 158 (236)
T cd03253 79 VVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPI 158 (236)
T ss_pred EECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999987655667778888888999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHHHhhcCEEEEEeCCEEEEecCHHHHHhhccChHHHHHHHH
Q 000406 1474 LLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETLLASHLNGVYASLVRA 1552 (1560)
Q Consensus 1474 LILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlsti~~aDrIlVLd~G~IvE~Gt~~eLl~~~~~g~y~~l~~~ 1552 (1560)
|||||||++||+.+...+.+.|++..++.|+|++||+++.+..||++++|++|++++.|+++++.+ +.+.|..++..
T Consensus 159 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~--~~~~~~~~~~~ 235 (236)
T cd03253 159 LLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLA--KGGLYAEMWKA 235 (236)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh--cccHHHHHHhc
Confidence 999999999999999999999998766889999999999998899999999999999999999987 46777776654
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-43 Score=400.16 Aligned_cols=234 Identities=50% Similarity=0.812 Sum_probs=211.7
Q ss_pred EEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHHHhccEE
Q 000406 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIG 752 (1560)
Q Consensus 673 i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~ 752 (1560)
|+++|++++|+.. ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKPD-GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCCC-CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 5789999999642 246899999999999999999999999999999999999999999999999998777777888999
Q ss_pred EEecCCcCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHHhccCCCE
Q 000406 753 MVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRI 832 (1560)
Q Consensus 753 ~v~Q~~~lf~~Tv~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARAl~~~p~i 832 (1560)
|++|++.+|+.||+||+.++.......++.+.++..++.+++..+|.|+++..+..+.+||||||||++|||||+.+|++
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l 159 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRI 159 (237)
T ss_pred EEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence 99999999989999999986543345556666777788889999999999988889999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCccccccCCEEEEEeCCeEEEecChhhHhhhcchHHHHH
Q 000406 833 LLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLERGGAYHDLV 907 (1560)
Q Consensus 833 llLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~D~i~vl~~G~iv~~G~~~~l~~~~~~~~~l~ 907 (1560)
|||||||++||+.+...+.+.|+++.+|+|+|++||+++.+..||+|++|++|++++.|++++++.+.+.|..++
T Consensus 160 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~ 234 (237)
T cd03252 160 LIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYLY 234 (237)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhccChHHHHH
Confidence 999999999999999999999998877899999999999997799999999999999999999987777776654
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-43 Score=398.94 Aligned_cols=236 Identities=61% Similarity=0.974 Sum_probs=214.0
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhhceE
Q 000406 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTA 1393 (1560)
Q Consensus 1314 I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~~I~ 1393 (1560)
|+++|++++|+...+.++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.++|.++...+...+|+.++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 57899999997532346999999999999999999999999999999999999999999999999998888888888999
Q ss_pred EEcCCCCCCCccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 000406 1394 LVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRV 1473 (1560)
Q Consensus 1394 ~VpQdp~LF~gTIreNL~~g~~~~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLARALLr~p~I 1473 (1560)
|+||++.+|+.|++||+.++......+++.+.++..++.+++..+|.|+++.+.....+||||||||++|||||+.+|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999986554556677788888899999999999999999998999999999999999999999999
Q ss_pred EEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHHHhhcCEEEEEeCCEEEEecCHHHHHhhccChHHHHHHH
Q 000406 1474 LLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETLLASHLNGVYASLVR 1551 (1560)
Q Consensus 1474 LILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlsti~~aDrIlVLd~G~IvE~Gt~~eLl~~~~~g~y~~l~~ 1551 (1560)
|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+..||+|++|++|++++.|+.+++.+ ..+.+..++.
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~--~~~~~~~~~~ 236 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMA--QKGVYAKLVK 236 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhh--cChhHHHHhh
Confidence 999999999999999999999998777899999999999998999999999999999999999886 3454555543
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=374.52 Aligned_cols=473 Identities=17% Similarity=0.205 Sum_probs=352.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 396 LLMTVLAAIVMMGAYLEITCWRLVGERSAQRIRTKYLRAVLRQDIAFFDTEVSTSDIMHGISSDIAQIQEVMGEKVAHFA 475 (1560)
Q Consensus 396 ~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~lr~~l~~~ll~~~l~ffd~~~~~G~i~~r~s~Dv~~i~~~l~~~l~~~i 475 (1560)
..++++..+.++.+.+.......+++....++|.++.++++..|+.-++. ..++.++.++.+|+..|. +-...++.+.
T Consensus 52 ~~f~~llllf~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerier-~~~~rlla~L~~Dvr~IS-f~~s~lp~~~ 129 (546)
T COG4615 52 PEFLGLLLLFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIER-LGSARLLAGLTSDVRNIS-FAFSRLPELV 129 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH-hcccchhhhhccccccee-ehHhhhHHHH
Confidence 33444444555555566667778899999999999999999999999974 488999999999999998 4455677789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcch--HH
Q 000406 476 HNIFTFICGYTVGFLRSWKVSLVVLSVTPLMMFCGMAYKAVYVGLTSKEEASYRRAGSVAEQAISSIRTVFSFVAE--DH 553 (1560)
Q Consensus 476 ~~i~~~i~~~ii~~~~s~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIka~~~e--~~ 553 (1560)
+.+..++++.+..+++|+.+.++.++.+.+.++...+...+..+..+...+...+..+..+..++|.+.++...-- ..
T Consensus 130 qa~il~l~s~aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~ 209 (546)
T COG4615 130 QAIILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYV 209 (546)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHH
Confidence 9999999999999999999988777777777777776666666667777777888889999999999998876532 12
Q ss_pred HHHHHHHHHHhHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 554 FAVRYAGLLADSIPFGAKLGFAKGAGMGVIYLVTYATWALAFWYGSILVARKELSGGAAIACFFGVNVGGRGLALSLSYF 633 (1560)
Q Consensus 554 ~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~ls~g~~~~~l~~~~~~~~~l~~~~~~~ 633 (1560)
+.+.|...-+...+.......+......+.+++.+.+..+++|+....... +...+.++...++....|+.+.+..+
T Consensus 210 h~~~~~~~a~~~r~~~~~~n~f~~la~~~~ni~l~~lIGlvf~lal~~~w~---st~~a~tivlvlLflr~pL~s~vgil 286 (546)
T COG4615 210 HNNLYIPDAQEYRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLALSLGWA---STNVAATIVLVLLFLRTPLLSAVGIL 286 (546)
T ss_pred HhhhcCcchHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc---hhhHHHHHHHHHHHHhhHHHHHHhhh
Confidence 222222211111121111122222333445566666666777776554332 22234444445556677899999999
Q ss_pred HHHHHHHHHHHHHHHHHccCCCCCCCCCCCCcCCCCcccEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCC
Q 000406 634 AQFAQGTVAATRVFEIIDRVPEIDPYNSEGRKLSSVSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGG 713 (1560)
Q Consensus 634 ~~~~~a~~a~~Ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsG 713 (1560)
+.+.+|.+|+++|.++-..++. ..... ....| .-..||++||.|+|+.. ..-+..||++|++||+|-|+|.||||
T Consensus 287 P~l~~AqvA~~kiakle~~~~~-a~~~~-~q~~p-~~~~lelrnvrfay~~~--~FhvgPiNl~ikrGelvFliG~NGsG 361 (546)
T COG4615 287 PTLLTAQVAFNKIAKLELAPYK-ADFPR-PQAFP-DWKTLELRNVRFAYQDN--AFHVGPINLTIKRGELVFLIGGNGSG 361 (546)
T ss_pred hHHHHHHHHHHHHHHhhcCCcc-ccCCC-CCcCC-cccceeeeeeeeccCcc--cceecceeeEEecCcEEEEECCCCCc
Confidence 9999999999999997653222 11111 11111 23469999999999742 24578899999999999999999999
Q ss_pred hHHHHHHHhcCCCCCccEEEECCeecCCccHHHHhccEEEEecCCcCccccHHHHHhcCCCC-CCHHHHHHHHHHhhhHH
Q 000406 714 KSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKEN-ATMKEAVAACKAASAHS 792 (1560)
Q Consensus 714 KSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Tv~eNi~~g~~~-~~~~~~~~~~~~~~~~~ 792 (1560)
|||++++|.|+|+|++|+|++||.++..-++++.|+-++-|+-|.+||+.++ |.+. .+.+.+...++...+..
T Consensus 362 KST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll------~~e~~as~q~i~~~LqrLel~~ 435 (546)
T COG4615 362 KSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL------GPEGKASPQLIEKWLQRLELAH 435 (546)
T ss_pred HHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh------CCccCCChHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999998654 3222 45555555554443322
Q ss_pred HHHhCCCCCCcccCCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHh--cCCcEEEEEecCc
Q 000406 793 FISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKI--SVGRTTIVIAHRL 870 (1560)
Q Consensus 793 ~i~~l~~gl~t~~~~~g~~LSgGQrQRialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~--~~~~tvi~itH~l 870 (1560)
..+ +.+|-- ....||-|||.|+|+--|++-+.+|++|||=-+--||.-++.+.+.+.-. ..||||+.||||-
T Consensus 436 kts-l~d~~f-----s~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd 509 (546)
T COG4615 436 KTS-LNDGRF-----SNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDD 509 (546)
T ss_pred hhc-ccCCcc-----cccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCc
Confidence 221 111110 12479999999999999999999999999999999999999888876544 3599999999999
Q ss_pred cccccCCEEEEEeCCeEEEe
Q 000406 871 ATVKNANTIVVLDQGSVVEI 890 (1560)
Q Consensus 871 ~~i~~~D~i~vl~~G~iv~~ 890 (1560)
.....|||++.|++|+++|.
T Consensus 510 ~YF~~ADrll~~~~G~~~e~ 529 (546)
T COG4615 510 HYFIHADRLLEMRNGQLSEL 529 (546)
T ss_pred hhhhhHHHHHHHhcCceeec
Confidence 99999999999999999985
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-43 Score=393.93 Aligned_cols=219 Identities=38% Similarity=0.622 Sum_probs=206.1
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhhce
Q 000406 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQT 1392 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~~I 1392 (1560)
.|+++|++++|+.. +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+...+|+.+
T Consensus 2 ~l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (221)
T cd03244 2 DIEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRI 80 (221)
T ss_pred cEEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhE
Confidence 58999999999743 24699999999999999999999999999999999999999999999999999988888899999
Q ss_pred EEEcCCCCCCCccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHccCCC
Q 000406 1393 ALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSR 1472 (1560)
Q Consensus 1393 ~~VpQdp~LF~gTIreNL~~g~~~~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLARALLr~p~ 1472 (1560)
+|+||++.+|++|++|||.+.. ....+++.++++..++.+++..+|.|+++.++..+.+||+|||||++|||||+++|+
T Consensus 81 ~~~~q~~~l~~~tv~enl~~~~-~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~ 159 (221)
T cd03244 81 SIIPQDPVLFSGTIRSNLDPFG-EYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSK 159 (221)
T ss_pred EEECCCCccccchHHHHhCcCC-CCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999998754 356778999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHHHhhcCEEEEEeCCEEEEecC
Q 000406 1473 VLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGS 1533 (1560)
Q Consensus 1473 ILILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlsti~~aDrIlVLd~G~IvE~Gt 1533 (1560)
+|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+..||+|++|++|++++.|+
T Consensus 160 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 160 ILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 9999999999999999999999998877889999999999999999999999999999886
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=396.05 Aligned_cols=214 Identities=30% Similarity=0.503 Sum_probs=188.0
Q ss_pred cEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHHHhccE
Q 000406 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQI 751 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 751 (1560)
.++++|++|+|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|.+|+|.+||+++.+++.+++.+++
T Consensus 2 ~L~~~~ls~~y~~---~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 2 MLEVENLSFGYGG---KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred eeEEEEEEEEECC---eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 4789999999973 5699999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCcC-ccccHHHHHhcCCCCC-------C--H-HHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHH
Q 000406 752 GMVGQEPIL-FATSILENVLMGKENA-------T--M-KEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRI 820 (1560)
Q Consensus 752 ~~v~Q~~~l-f~~Tv~eNi~~g~~~~-------~--~-~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRi 820 (1560)
+||||++.. +.-||+|-+.+|+... + + +.+.++++..++. ....+...+||||||||+
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~-----------~la~r~~~~LSGGerQrv 147 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLE-----------HLADRPVDELSGGERQRV 147 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcH-----------HHhcCcccccChhHHHHH
Confidence 999999754 4559999999986321 1 2 2344455555443 344555678999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCccccc-cCCEEEEEeCCeEEEecChhhHh
Q 000406 821 ALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKIS--VGRTTIVIAHRLATVK-NANTIVVLDQGSVVEIGNHRQLL 897 (1560)
Q Consensus 821 alARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~-~~D~i~vl~~G~iv~~G~~~~l~ 897 (1560)
.|||||+++|+|||||||||+||...+..+++.++++. +|+|+|+|.||++.+. .||++++|++|+++..|+|++++
T Consensus 148 ~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 148 LIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred HHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 99999999999999999999999999999999999884 4899999999999875 59999999999999999999988
Q ss_pred hh
Q 000406 898 ER 899 (1560)
Q Consensus 898 ~~ 899 (1560)
..
T Consensus 228 T~ 229 (258)
T COG1120 228 TE 229 (258)
T ss_pred CH
Confidence 64
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-43 Score=377.96 Aligned_cols=222 Identities=33% Similarity=0.541 Sum_probs=190.8
Q ss_pred ccEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHH---HH
Q 000406 671 GKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVK---WL 747 (1560)
Q Consensus 671 g~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~---~l 747 (1560)
..|++++|+++|++ +.||+||||+|++||+++|+|+||||||||+++|.|+..|++|+|.++|.++..++.+ .+
T Consensus 7 ~~I~vr~v~~~fG~---~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~i 83 (263)
T COG1127 7 PLIEVRGVTKSFGD---RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEI 83 (263)
T ss_pred ceEEEeeeeeecCC---EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHH
Confidence 36999999999974 5699999999999999999999999999999999999999999999999999888754 57
Q ss_pred hccEEEEecCCcCccc-cHHHHHhcCCCCC---CHHHHHHHHHHhhhHHHHHhCCCCCCcc-cCCCCCCCChHHHHHHHH
Q 000406 748 RTQIGMVGQEPILFAT-SILENVLMGKENA---TMKEAVAACKAASAHSFISELPLGYDTQ-VGDRGTQLSGGQKQRIAL 822 (1560)
Q Consensus 748 r~~i~~v~Q~~~lf~~-Tv~eNi~~g~~~~---~~~~~~~~~~~~~~~~~i~~l~~gl~t~-~~~~g~~LSgGQrQRial 822 (1560)
|+++|+++|...||.. ||+||+.|...+. ..+.+.+.+ ... ++. .|+... ....+.+||||++.|+||
T Consensus 84 r~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv-~~K----L~~--VGL~~~~~~~~PsELSGGM~KRvaL 156 (263)
T COG1127 84 RKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELV-LMK----LEL--VGLRGAAADLYPSELSGGMRKRVAL 156 (263)
T ss_pred HhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHH-HHH----HHh--cCCChhhhhhCchhhcchHHHHHHH
Confidence 8999999999999987 9999999965332 233332211 111 221 366555 345678999999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhHhhh
Q 000406 823 ARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISV--GRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLER 899 (1560)
Q Consensus 823 ARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l~~~ 899 (1560)
|||+..+|+|+++|||||+|||.+...+.+.|+++.+ |.|+|+|||+++++.. ||||++|.+|+|+..|+++|+.+.
T Consensus 157 ARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~~s 236 (263)
T COG1127 157 ARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLAS 236 (263)
T ss_pred HHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999998853 8999999999999977 899999999999999999999876
Q ss_pred cch
Q 000406 900 GGA 902 (1560)
Q Consensus 900 ~~~ 902 (1560)
+..
T Consensus 237 d~P 239 (263)
T COG1127 237 DDP 239 (263)
T ss_pred CCH
Confidence 543
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=393.78 Aligned_cols=225 Identities=49% Similarity=0.797 Sum_probs=211.0
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhhce
Q 000406 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQT 1392 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~~I 1392 (1560)
.|+++|++++|+. ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|.+|+|.++|.++...+...+|+.+
T Consensus 2 ~l~~~~l~~~~~~--~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 79 (229)
T cd03254 2 EIEFENVNFSYDE--KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMI 79 (229)
T ss_pred eEEEEEEEEecCC--CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhE
Confidence 5899999999963 23599999999999999999999999999999999999999999999999999988888899999
Q ss_pred EEEcCCCCCCCccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHccCCC
Q 000406 1393 ALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSR 1472 (1560)
Q Consensus 1393 ~~VpQdp~LF~gTIreNL~~g~~~~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLARALLr~p~ 1472 (1560)
+|+||++.+|++|++||+.++.+....+++.++++..++.+++..+|.|+++.++.....||||||||++|||||+++|+
T Consensus 80 ~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~ 159 (229)
T cd03254 80 GVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPK 159 (229)
T ss_pred EEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999998765556678888899999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHHHhhcCEEEEEeCCEEEEecCHHHHHh
Q 000406 1473 VLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETLLA 1539 (1560)
Q Consensus 1473 ILILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlsti~~aDrIlVLd~G~IvE~Gt~~eLl~ 1539 (1560)
+|||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+..||+|++|++|++++.|+.+++++
T Consensus 160 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 226 (229)
T cd03254 160 ILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLA 226 (229)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 9999999999999999999999998877899999999999998899999999999999999998876
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-43 Score=415.04 Aligned_cols=228 Identities=28% Similarity=0.462 Sum_probs=193.3
Q ss_pred EEEEEEEEEcCCCC-CccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHH---Hh
Q 000406 1314 IELKMVTFTYPSRP-EVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKW---LR 1389 (1560)
Q Consensus 1314 I~~~nVsf~Y~~~~-~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~---LR 1389 (1560)
|+++||+++|+.+. ..++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++..+ +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999996422 246999999999999999999999999999999999999999999999999999887654 57
Q ss_pred hceEEEcCCCCCCC-ccHHHHHhcCC--CCCCH----HHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHH
Q 000406 1390 KQTALVGQEPALFA-GTIRDNIALGN--PKASW----AEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIA 1462 (1560)
Q Consensus 1390 ~~I~~VpQdp~LF~-gTIreNL~~g~--~~~sd----~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLa 1462 (1560)
++|+||||++.+|. .|++||+.++. ...+. +++.++++.+++.++... ....||||||||++
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~-----------~~~~LSgGqkQRV~ 150 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDS-----------YPSNLSGGQKQRVA 150 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhC-----------ChhhCCHHHHHHHH
Confidence 89999999999995 79999998742 12222 335566666666554433 33579999999999
Q ss_pred HHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHHHh
Q 000406 1463 IARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSK--RATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLA 1539 (1560)
Q Consensus 1463 LARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~--~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eLl~ 1539 (1560)
|||||+.+|+|||||||||+||+.+...|.+.|++..+ +.|+|+|||+++.+.. ||+|++|++|+|+|.|++++++.
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 99999999999999999999999999999999998754 6899999999999976 99999999999999999999987
Q ss_pred hccChHHHHHHHH
Q 000406 1540 SHLNGVYASLVRA 1552 (1560)
Q Consensus 1540 ~~~~g~y~~l~~~ 1552 (1560)
+.++....+++..
T Consensus 231 ~p~~~~~~~~~~~ 243 (343)
T TIGR02314 231 HPKTPLAQKFIRS 243 (343)
T ss_pred CCCcHHHHHHHhh
Confidence 4334445555543
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-43 Score=405.08 Aligned_cols=213 Identities=35% Similarity=0.568 Sum_probs=188.1
Q ss_pred cEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHHHhccE
Q 000406 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQI 751 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 751 (1560)
.|+++||+++|++. .+|+||||+|+.||+++|+|||||||||||++|+|+.+|++|+|.|+|.++++++++. +.|
T Consensus 3 ~i~l~~v~K~yg~~---~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~i 77 (338)
T COG3839 3 ELELKNVRKSFGSF---EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGI 77 (338)
T ss_pred EEEEeeeEEEcCCc---eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCE
Confidence 58999999999742 2899999999999999999999999999999999999999999999999999998876 689
Q ss_pred EEEecCCcCccc-cHHHHHhcCCCCC--C----HHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHH
Q 000406 752 GMVGQEPILFAT-SILENVLMGKENA--T----MKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALAR 824 (1560)
Q Consensus 752 ~~v~Q~~~lf~~-Tv~eNi~~g~~~~--~----~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialAR 824 (1560)
++|||+..||+. ||+|||.|+.... . ++++.++++.. +++..+.+.+.+|||||||||||||
T Consensus 78 amVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L-----------~l~~lL~r~P~~LSGGQrQRVAlaR 146 (338)
T COG3839 78 AMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLL-----------GLEHLLNRKPLQLSGGQRQRVALAR 146 (338)
T ss_pred EEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHc-----------CChhHHhcCcccCChhhHHHHHHHH
Confidence 999999999986 9999999997532 2 23333344333 5566667778899999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhHhhhc
Q 000406 825 AMIKDPRILLLDEPTSALDSESESIVQQAIDKIS--VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLERG 900 (1560)
Q Consensus 825 Al~~~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l~~~~ 900 (1560)
||+++|+++|||||+|+||++.+..+...|+++. -+.|+|+||||..++.. +|||+||++|+|.+.|+|.|+..+.
T Consensus 147 AlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P 225 (338)
T COG3839 147 ALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERP 225 (338)
T ss_pred HHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCc
Confidence 9999999999999999999999999988888874 37899999999998875 9999999999999999999998653
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=380.23 Aligned_cols=209 Identities=35% Similarity=0.541 Sum_probs=173.6
Q ss_pred EEEEEEEEEcCCCC-CccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHH---HH-
Q 000406 673 IEFKGVTFAYPSRP-ETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVK---WL- 747 (1560)
Q Consensus 673 i~~~~vs~~y~~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~---~l- 747 (1560)
++++||++.|.... ...+|++|||+|++||+++|+|||||||||||++|.|+..|++|.|.++|+|+..++.+ .+
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 67999999997432 24689999999999999999999999999999999999999999999999999988743 33
Q ss_pred hccEEEEecCCcCccc-cHHHHHhcCCCC--CCHHHHHHHHHHhhhHHHHHhCCCCCCcccC-CCCCCCChHHHHHHHHH
Q 000406 748 RTQIGMVGQEPILFAT-SILENVLMGKEN--ATMKEAVAACKAASAHSFISELPLGYDTQVG-DRGTQLSGGQKQRIALA 823 (1560)
Q Consensus 748 r~~i~~v~Q~~~lf~~-Tv~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~-~~g~~LSgGQrQRialA 823 (1560)
|++||||+|+..|++. |++|||.++... ....+..++ ..+.++.+ |+..... ..+.+||||||||||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~-----~~~l~~~l--gl~~~~~~~~p~eLSGGqqQRVAIA 154 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRA-----AEELLEVL--GLEDRLLKKKPSELSGGQQQRVAIA 154 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHH-----HHHHHHhc--CChhhhccCCchhcCHHHHHHHHHH
Confidence 4579999999999986 999999964211 111111111 11223332 5553444 66889999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHh--cCCcEEEEEecCccccccCCEEEEEeCCeEE
Q 000406 824 RAMIKDPRILLLDEPTSALDSESESIVQQAIDKI--SVGRTTIVIAHRLATVKNANTIVVLDQGSVV 888 (1560)
Q Consensus 824 RAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~--~~~~tvi~itH~l~~i~~~D~i~vl~~G~iv 888 (1560)
|||+.+|+|+|.||||++||.++.+.|++.++++ ..|+|+|+|||+...+..|||++.|++|++.
T Consensus 155 RAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~ 221 (226)
T COG1136 155 RALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIE 221 (226)
T ss_pred HHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeee
Confidence 9999999999999999999999999999999988 3489999999999999999999999999954
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=388.00 Aligned_cols=213 Identities=33% Similarity=0.542 Sum_probs=191.4
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhhce
Q 000406 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQT 1392 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~~I 1392 (1560)
.++++||+|+|.+ +++|+|+||+|++||.++|+||||||||||+++|.|+.+|.+|+|++||.++.+++.+++-+++
T Consensus 2 ~L~~~~ls~~y~~---~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 2 MLEVENLSFGYGG---KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred eeEEEEEEEEECC---eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 3789999999963 4699999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCC-CCCCccHHHHHhcCC-C--------C-CCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 000406 1393 ALVGQEP-ALFAGTIRDNIALGN-P--------K-ASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRI 1461 (1560)
Q Consensus 1393 ~~VpQdp-~LF~gTIreNL~~g~-~--------~-~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRL 1461 (1560)
+||||.+ .-|.-||+|=+.+|+ | . .+.+.+.+|++..++.++..+. + ..||||||||+
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~-------~----~~LSGGerQrv 147 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRP-------V----DELSGGERQRV 147 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCc-------c----cccChhHHHHH
Confidence 9999997 456779999998884 2 1 1233578889999998876442 2 35999999999
Q ss_pred HHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc--CCceEEEEecChHHH-hhcCEEEEEeCCEEEEecCHHHHH
Q 000406 1462 AIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVS--KRATTIVVAHRLSTI-REANMIAVVRDGAVVEYGSHETLL 1538 (1560)
Q Consensus 1462 aLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~--~~~TvI~IAHRlsti-~~aDrIlVLd~G~IvE~Gt~~eLl 1538 (1560)
.|||||.++|+||+||||||+||....-.|++.++++. +++|+|+|.|+++.. +.||++++|++|+|+..|+|+|.+
T Consensus 148 ~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 148 LIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred HHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 99999999999999999999999999999999999876 368999999999876 559999999999999999999998
Q ss_pred h
Q 000406 1539 A 1539 (1560)
Q Consensus 1539 ~ 1539 (1560)
.
T Consensus 228 T 228 (258)
T COG1120 228 T 228 (258)
T ss_pred C
Confidence 6
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=380.11 Aligned_cols=202 Identities=33% Similarity=0.521 Sum_probs=172.0
Q ss_pred cEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHHHhccE
Q 000406 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQI 751 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 751 (1560)
.+++++|+++|+. ..+|+||||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.+++.- ...+
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~ 74 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDI 74 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCE
Confidence 4889999999974 5699999999999999999999999999999999999999999999999988433 3479
Q ss_pred EEEecCCcCcc-ccHHHHHhcCCCCCC--HHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHHhcc
Q 000406 752 GMVGQEPILFA-TSILENVLMGKENAT--MKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIK 828 (1560)
Q Consensus 752 ~~v~Q~~~lf~-~Tv~eNi~~g~~~~~--~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARAl~~ 828 (1560)
+||+|++.||+ .||+||+.++..... .++..+ .+.+.++.. |+...-+..+.+||||||||+||||||+.
T Consensus 75 ~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~-----~a~~~L~~V--gL~~~~~~~P~qLSGGMrQRVaiARAL~~ 147 (248)
T COG1116 75 GYVFQEDALLPWLTVLDNVALGLELRGKSKAEARE-----RAKELLELV--GLAGFEDKYPHQLSGGMRQRVAIARALAT 147 (248)
T ss_pred EEEeccCcccchhhHHhhheehhhccccchHhHHH-----HHHHHHHHc--CCcchhhcCccccChHHHHHHHHHHHHhc
Confidence 99999999998 599999999876432 221111 222334443 66666677788999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHh--cCCcEEEEEecCcccccc-CCEEEEEeC--CeEE
Q 000406 829 DPRILLLDEPTSALDSESESIVQQAIDKI--SVGRTTIVIAHRLATVKN-ANTIVVLDQ--GSVV 888 (1560)
Q Consensus 829 ~p~illLDEpts~LD~~~~~~i~~~l~~~--~~~~tvi~itH~l~~i~~-~D~i~vl~~--G~iv 888 (1560)
+|+|||||||++|||+.|+..+++.+.++ ..++||++|||+++++-. +|||+||.+ |+|.
T Consensus 148 ~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~ 212 (248)
T COG1116 148 RPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIG 212 (248)
T ss_pred CCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCccee
Confidence 99999999999999999999999999887 347999999999999765 999999998 5553
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-42 Score=390.71 Aligned_cols=231 Identities=54% Similarity=0.885 Sum_probs=208.4
Q ss_pred EEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHHHhccEE
Q 000406 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIG 752 (1560)
Q Consensus 673 i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~ 752 (1560)
|+++|++++|++. +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 5789999999743 235899999999999999999999999999999999999999999999999988777777888999
Q ss_pred EEecCCcCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHHhccCCCE
Q 000406 753 MVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRI 832 (1560)
Q Consensus 753 ~v~Q~~~lf~~Tv~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARAl~~~p~i 832 (1560)
|++|++.+|+.|++||+.++.......++.+.++..++.++++.+|.|+++..+..+.+||||||||++|||||+++|++
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 159 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPI 159 (234)
T ss_pred EeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999987654444555666677788899999998999999988999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCccccccCCEEEEEeCCeEEEecChhhHhhhcchHH
Q 000406 833 LLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLERGGAYH 904 (1560)
Q Consensus 833 llLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~D~i~vl~~G~iv~~G~~~~l~~~~~~~~ 904 (1560)
|||||||++||+.+...+.+.|+++.+++|+|++||+++.+..||+|++|++|++++.|+++++....+.|+
T Consensus 160 llLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~ 231 (234)
T cd03251 160 LILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGGVYA 231 (234)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHcCcchh
Confidence 999999999999999999999998877899999999999998899999999999999999998876655443
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-43 Score=407.12 Aligned_cols=214 Identities=31% Similarity=0.528 Sum_probs=187.8
Q ss_pred ccEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHHHhcc
Q 000406 671 GKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQ 750 (1560)
Q Consensus 671 g~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~ 750 (1560)
..|+++||+++|+ +..+|+||||+|++||+++|+|||||||||||++|+|+.+|++|+|.++|+++.++++.. +.
T Consensus 4 ~~l~i~~v~k~yg---~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~k--R~ 78 (352)
T COG3842 4 PALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEK--RP 78 (352)
T ss_pred ceEEEEeeeeecC---CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhh--cc
Confidence 3699999999997 357999999999999999999999999999999999999999999999999999988764 68
Q ss_pred EEEEecCCcCccc-cHHHHHhcCCCC---CCHH----HHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHH
Q 000406 751 IGMVGQEPILFAT-SILENVLMGKEN---ATMK----EAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIAL 822 (1560)
Q Consensus 751 i~~v~Q~~~lf~~-Tv~eNi~~g~~~---~~~~----~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRial 822 (1560)
|++|+|+..||+. ||+|||.||... ...+ ++.++++.+ |+...-.+.+.+|||||||||||
T Consensus 79 ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV-----------~L~~~~~R~p~qLSGGQqQRVAL 147 (352)
T COG3842 79 IGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELV-----------GLEGFADRKPHQLSGGQQQRVAL 147 (352)
T ss_pred cceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHc-----------CchhhhhhChhhhChHHHHHHHH
Confidence 9999999999986 999999999761 1122 333444444 44445567778999999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhHhhh
Q 000406 823 ARAMIKDPRILLLDEPTSALDSESESIVQQAIDKIS--VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLER 899 (1560)
Q Consensus 823 ARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l~~~ 899 (1560)
||||..+|++||||||.|+||.+-+..++..++++. .|.|.|+||||-++... +|||+||++|+|...|+|+|+..+
T Consensus 148 ARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~ 227 (352)
T COG3842 148 ARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYER 227 (352)
T ss_pred HHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhC
Confidence 999999999999999999999999999999888773 48999999999998754 999999999999999999999875
Q ss_pred c
Q 000406 900 G 900 (1560)
Q Consensus 900 ~ 900 (1560)
.
T Consensus 228 P 228 (352)
T COG3842 228 P 228 (352)
T ss_pred c
Confidence 3
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-42 Score=385.35 Aligned_cols=219 Identities=40% Similarity=0.694 Sum_probs=202.3
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhhce
Q 000406 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQT 1392 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~~I 1392 (1560)
.|+++|++++|+.. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+...+|+.+
T Consensus 2 ~l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 2 RIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred eEEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 48999999999642 24699999999999999999999999999999999999999999999999999888877788999
Q ss_pred EEEcCCCCCCCccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHccCCC
Q 000406 1393 ALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSR 1472 (1560)
Q Consensus 1393 ~~VpQdp~LF~gTIreNL~~g~~~~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLARALLr~p~ 1472 (1560)
+|+||++.+|..|++||+.++.+..+.+++.++++..++.+.+..+|.|++|.+.....+||||||||++||||++.+|+
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 160 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPP 160 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999988654445667888899999999999999999999998889999999999999999999999
Q ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHHHhhcCEEEEEeCCEEEEec
Q 000406 1473 VLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYG 1532 (1560)
Q Consensus 1473 ILILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlsti~~aDrIlVLd~G~IvE~G 1532 (1560)
+|||||||++||+.+...+.+.|++..+++|+|+|||+++.+..||+|++|++|++++.|
T Consensus 161 llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 161 ILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 999999999999999999999999886668999999999988779999999999998765
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-39 Score=390.26 Aligned_cols=472 Identities=17% Similarity=0.132 Sum_probs=346.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccccc---CChHHHHHHHhhhHHHHHHHHHH
Q 000406 1036 LSLALVGLGFGCIIFMTGQQGFCGWAGTKLTMRVRELLFRSILKQEPGWFDFEE---NSTGVLVSRLSIDSISFRSVLGD 1112 (1560)
Q Consensus 1036 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~ll~~~~~ffd~~~---~~~G~il~R~s~Di~~i~~~l~~ 1112 (1560)
.+.++.++..+...+...+.++......+.-..|-+.+..+-+.....|+-... ...=..=.|+..|+..+-+.-..
T Consensus 88 ~l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~~ 167 (604)
T COG4178 88 QLQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLAQAGGIGLIDNPDQRIQEDIRNFTETTLD 167 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhcccccCCCChHHhHHHHHHHHHhhHHH
Confidence 344555555556666666777777777777777888888888877744332111 00112346888888877666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHH-HHhcchhhhhhhHHHHHHH
Q 000406 1113 RFSVLLMGLSSAAVGLGVSLVLN---------------WRLTLVAAALTPFTLGASYLSL-IINVGPKIDNSSYAKASSI 1176 (1560)
Q Consensus 1113 ~l~~~l~~~~~~i~~l~~~~~~~---------------~~l~lv~l~~ipl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 1176 (1560)
....++.++++.+...+++.-++ ..+.+++++.+++...+.++.. ...+....+.+..+.....
T Consensus 168 l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~ 247 (604)
T COG4178 168 LSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYS 247 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHH
Confidence 66666666666665555554222 1222222222222222211111 1111111222333444455
Q ss_pred HHHHhcchhHHHhccchHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHH
Q 000406 1177 ASGAVSNIRTVTTFSAQEQIINSFDKALSEPKKKSVKRSQILGLTLGFSQGAMYVAYTFTLWFGAYLVKQGHASFGVVYK 1256 (1560)
Q Consensus 1177 ~~e~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~s~g~~~~ 1256 (1560)
+...-++.+.|..++-|+...++.++..+.......+...+......+.....++..++-+.+++-..+.|++++|.++.
T Consensus 248 Lvrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~~f~g~i~~G~lmq 327 (604)
T COG4178 248 LVRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQITFGGLMQ 327 (604)
T ss_pred HHHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccHhhhcCcChHHHHHH
Confidence 66667888999999999999888888887777766666666655666666666666777777888889999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccC------CccccccccccC--CCCCccEEEEEEEEEcCCCCC
Q 000406 1257 IFLILVLSSFSVGQLAGLAPDTSMAATAIPAVLQITKRK------PLIDNVKGRKLE--RSKPLGIELKMVTFTYPSRPE 1328 (1560)
Q Consensus 1257 ~~~~~~~~~~~i~~l~~~~~~~~~~~~s~~ri~~i~~~~------~~~~~~~~~~~~--~~~~~~I~~~nVsf~Y~~~~~ 1328 (1560)
....+......++.+...+..+..-.+.+.|+.++.+.- ++.......... ......|+|+||+..-|++
T Consensus 328 a~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~~-- 405 (604)
T COG4178 328 AVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDG-- 405 (604)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeEEeeeeEECCCC--
Confidence 999999999999999999999999999999998886322 111111111110 1114579999999998864
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhhceEEEcCCCCCCCccHHH
Q 000406 1329 VTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQEPALFAGTIRD 1408 (1560)
Q Consensus 1329 ~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~~I~~VpQdp~LF~gTIre 1408 (1560)
...|++++|.|++||.+-|.|+||||||||+++|+|+++-.+|+|.+-. -..+-|+||.|++-.||+||
T Consensus 406 ~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~-----------~~~~lflpQ~PY~p~GtLre 474 (604)
T COG4178 406 QTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA-----------DSALLFLPQRPYLPQGTLRE 474 (604)
T ss_pred CeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC-----------CCceEEecCCCCCCCccHHH
Confidence 3689999999999999999999999999999999999999999987741 13579999999999999999
Q ss_pred HHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCcCCCHH
Q 000406 1409 NIALGNPK--ASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLE 1486 (1560)
Q Consensus 1409 NL~~g~~~--~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLARALLr~p~ILILDEaTSaLD~~ 1486 (1560)
=|++.++. .+|+|+.++|.+|+|.+++.++.+ .+ .-..-||+|||||||+||.||++|++++||||||+||++
T Consensus 475 ~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~-~~----~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~ 549 (604)
T COG4178 475 ALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDE-ED----RWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEE 549 (604)
T ss_pred HHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhc-cC----cHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChH
Confidence 99998644 799999999999999999999743 22 244579999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCceEEEEecChHHHhhcCEEEEEeC
Q 000406 1487 SEKHVQDALRKVSKRATTIVVAHRLSTIREANMIAVVRD 1525 (1560)
Q Consensus 1487 Te~~I~~~L~~~~~~~TvI~IAHRlsti~~aDrIlVLd~ 1525 (1560)
+|..+.+.+++..+++|+|.|+||.......++.+-+++
T Consensus 550 ~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l~~ 588 (604)
T COG4178 550 TEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLELLD 588 (604)
T ss_pred HHHHHHHHHHhhCCCCEEEEeccchhhHHHHhhheeecc
Confidence 999999999999999999999999988888777666653
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-42 Score=388.53 Aligned_cols=227 Identities=48% Similarity=0.854 Sum_probs=207.0
Q ss_pred ccEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHHHhcc
Q 000406 671 GKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQ 750 (1560)
Q Consensus 671 g~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~ 750 (1560)
+.|+++|++++|+. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.
T Consensus 1 ~~l~~~~l~~~~~~--~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (229)
T cd03254 1 GEIEFENVNFSYDE--KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSM 78 (229)
T ss_pred CeEEEEEEEEecCC--CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhh
Confidence 46899999999963 2358999999999999999999999999999999999999999999999999987777778889
Q ss_pred EEEEecCCcCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHHhccCC
Q 000406 751 IGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDP 830 (1560)
Q Consensus 751 i~~v~Q~~~lf~~Tv~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARAl~~~p 830 (1560)
++|++|++.+|++|++||+.++.......++.++++..++.++++.+|.|+++.++....+||||||||++|||||+.+|
T Consensus 79 i~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p 158 (229)
T cd03254 79 IGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDP 158 (229)
T ss_pred EEEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999876544555666677777888999999999999999889999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCccccccCCEEEEEeCCeEEEecChhhHhhh
Q 000406 831 RILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLER 899 (1560)
Q Consensus 831 ~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~D~i~vl~~G~iv~~G~~~~l~~~ 899 (1560)
++|||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+..||+|++|++|++++.|+.+++...
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~ 227 (229)
T cd03254 159 KILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK 227 (229)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhh
Confidence 999999999999999999999999988778999999999999878999999999999999988877643
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=359.24 Aligned_cols=207 Identities=33% Similarity=0.531 Sum_probs=180.0
Q ss_pred EEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccH---HHHhc
Q 000406 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQV---KWLRT 749 (1560)
Q Consensus 673 i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~---~~lr~ 749 (1560)
|+|+||+++|+.. +++|+||||+|++||++-|+||||||||||+|+|++...|+.|+|.++|.|+..+.. ..+|+
T Consensus 2 I~f~~V~k~Y~~g--~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 2 IRFENVSKAYPGG--REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred eeehhhhhhcCCC--chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 7999999999864 669999999999999999999999999999999999999999999999999987754 46899
Q ss_pred cEEEEecCCcCccc-cHHHHHhcCCCCC--C----HHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHH
Q 000406 750 QIGMVGQEPILFAT-SILENVLMGKENA--T----MKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIAL 822 (1560)
Q Consensus 750 ~i~~v~Q~~~lf~~-Tv~eNi~~g~~~~--~----~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRial 822 (1560)
+||+|+||..|... ||.||++|...-. . .+++.++++.+++.+ ....-+.+||||||||+||
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~-----------k~~~lP~~LSGGEQQRvaI 148 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKH-----------KARALPSQLSGGEQQRVAI 148 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccch-----------hhhcCccccCchHHHHHHH
Confidence 99999999998876 9999999975422 2 233444555554444 4444456899999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCcccccc-CCEEEEEeCCeEEEecC
Q 000406 823 ARAMIKDPRILLLDEPTSALDSESESIVQQAIDKIS-VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGN 892 (1560)
Q Consensus 823 ARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~ 892 (1560)
|||++.+|++||-||||.+|||+....|++.+.++. .|.||++.||+.+.+.. --|++.|++|+++....
T Consensus 149 ARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 149 ARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred HHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEeccc
Confidence 999999999999999999999999999999999884 59999999999999987 57999999999987543
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-42 Score=390.60 Aligned_cols=233 Identities=60% Similarity=0.967 Sum_probs=207.2
Q ss_pred EEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHHHhccEE
Q 000406 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIG 752 (1560)
Q Consensus 673 i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~ 752 (1560)
|+++|+++.|+...+.++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...++++++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 47899999997533346899999999999999999999999999999999999999999999999988777767778899
Q ss_pred EEecCCcCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHHhccCCCE
Q 000406 753 MVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRI 832 (1560)
Q Consensus 753 ~v~Q~~~lf~~Tv~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARAl~~~p~i 832 (1560)
|++|++.+++.|++||+.++......+++.+.++..++.+++..+|.|+++.++....+||||||||++|||||+.+|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999989999999987654444555556666677888899999999999998999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCccccccCCEEEEEeCCeEEEecChhhHhhhcchHHH
Q 000406 833 LLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLERGGAYHD 905 (1560)
Q Consensus 833 llLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~D~i~vl~~G~iv~~G~~~~l~~~~~~~~~ 905 (1560)
|||||||++||+.+.+.+.+.|+++.+|+|+|++||+++.+..||+|++|++|++++.|+.+++......+++
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~ 233 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKGVYAK 233 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhcChhHHH
Confidence 9999999999999999999999887678999999999999888999999999999999998888765444433
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=371.68 Aligned_cols=216 Identities=36% Similarity=0.564 Sum_probs=186.0
Q ss_pred cEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCcc---HHHHh
Q 000406 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQ---VKWLR 748 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~---~~~lr 748 (1560)
.|+++||+..||+ ++.+|+||||+|++||+|||+|+||||||||+++|.|+.+|++|+|.++|.++..+. ...+|
T Consensus 3 ~i~~~nl~k~yp~--~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 3 MIEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred eEEEeeeeeecCC--CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 5899999999984 467999999999999999999999999999999999999999999999999998776 45678
Q ss_pred ccEEEEecCCcCccc-cHHHHHhcCCCCC-----------CHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHH
Q 000406 749 TQIGMVGQEPILFAT-SILENVLMGKENA-----------TMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQ 816 (1560)
Q Consensus 749 ~~i~~v~Q~~~lf~~-Tv~eNi~~g~~~~-----------~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQ 816 (1560)
++|||++|++.|.+. ||.+|++.|.-.. +.++. ..+.+.++.+ |+....-.+..+|||||
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk------~~Al~aLerv--gi~~~A~qra~~LSGGQ 152 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDK------AQALDALERV--GILDKAYQRASTLSGGQ 152 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHH------HHHHHHHHHc--CcHHHHHHHhccCCcch
Confidence 899999999999986 9999999886431 12221 1222233333 44344445667999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHh--cCCcEEEEEecCcccccc-CCEEEEEeCCeEEEecCh
Q 000406 817 KQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKI--SVGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNH 893 (1560)
Q Consensus 817 rQRialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~--~~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~ 893 (1560)
+|||+|||||+++|+|+|-|||+|+|||.+.+.+++.|+++ ..|.|+|+.-|.++.++. ||||+-|++|+|+..|++
T Consensus 153 QQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~ 232 (258)
T COG3638 153 QQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPA 232 (258)
T ss_pred hHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCCh
Confidence 99999999999999999999999999999999999999987 458999999999999976 999999999999999999
Q ss_pred hhHh
Q 000406 894 RQLL 897 (1560)
Q Consensus 894 ~~l~ 897 (1560)
+|+-
T Consensus 233 ~el~ 236 (258)
T COG3638 233 SELT 236 (258)
T ss_pred hhhh
Confidence 9864
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-42 Score=354.60 Aligned_cols=210 Identities=32% Similarity=0.540 Sum_probs=184.9
Q ss_pred EEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHHHhccEE
Q 000406 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIG 752 (1560)
Q Consensus 673 i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~ 752 (1560)
|.+++|.|+|...+ -..+++|++||++||+||||||||||+++|+|+..|.+|+|.|+|+|....++.+ +-++
T Consensus 2 l~L~~V~~~y~~~~-----~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~--RPVS 74 (231)
T COG3840 2 LALDDVRFSYGHLP-----MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAE--RPVS 74 (231)
T ss_pred ccccceEEeeCcce-----EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCccc--CChh
Confidence 56889999997421 3578999999999999999999999999999999999999999999998776653 5699
Q ss_pred EEecCCcCccc-cHHHHHhcCCCC------CCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHH
Q 000406 753 MVGQEPILFAT-SILENVLMGKEN------ATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARA 825 (1560)
Q Consensus 753 ~v~Q~~~lf~~-Tv~eNi~~g~~~------~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARA 825 (1560)
+++||..||.. ||++||.+|... ...+++..++..+++..+.+++| .+||||||||+||||+
T Consensus 75 mlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP-----------~~LSGGqRQRvALARc 143 (231)
T COG3840 75 MLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLP-----------GELSGGQRQRVALARC 143 (231)
T ss_pred hhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCc-----------cccCchHHHHHHHHHH
Confidence 99999999987 999999998532 12455667777888877777776 3799999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHh--cCCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhHhhhc
Q 000406 826 MIKDPRILLLDEPTSALDSESESIVQQAIDKI--SVGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLERG 900 (1560)
Q Consensus 826 l~~~p~illLDEpts~LD~~~~~~i~~~l~~~--~~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l~~~~ 900 (1560)
|+++-+||+||||+|+|||.-+..+...+.++ .++.|+++|||.++.+.. +|+++++++|+|.+.|+.++++...
T Consensus 144 lvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~ 221 (231)
T COG3840 144 LVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGK 221 (231)
T ss_pred HhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccC
Confidence 99999999999999999999999999999877 468999999999999876 9999999999999999999987643
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-42 Score=372.67 Aligned_cols=224 Identities=29% Similarity=0.483 Sum_probs=187.6
Q ss_pred cEEEEEEEEEcCCCCC-ccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCC-HHHHhh
Q 000406 1313 GIELKMVTFTYPSRPE-VTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREIN-VKWLRK 1390 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~~~-~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~-l~~LR~ 1390 (1560)
-++++|+++.|+.... .++|+||||+|.+||++||||+||||||||.++|+|+.+|++|+|.+||.++.... .+..++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 4899999999975420 14999999999999999999999999999999999999999999999998766543 347788
Q ss_pred ceEEEcCCCC--CCC-ccHHHHHh----cCCCCCCHHHHHHHHHHHhHHH-HHHhCCCCccccccCCCCCCChHHHHHHH
Q 000406 1391 QTALVGQEPA--LFA-GTIRDNIA----LGNPKASWAEIEEAAEEAYIHK-FISSLPQGYETQVGESGVQLSGGQKQRIA 1462 (1560)
Q Consensus 1391 ~I~~VpQdp~--LF~-gTIreNL~----~g~~~~sd~eI~~al~~a~l~~-~I~~Lp~Gldt~Vge~G~~LSGGQrQRLa 1462 (1560)
.+.+|+|||. |=+ -||++-|. ...-.....+++++++.+++.+ |....| ..||||||||||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P-----------~eLSGGQ~QRia 151 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRP-----------HELSGGQRQRIA 151 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCc-----------hhcChhHHHHHH
Confidence 9999999996 222 36666654 2111223456889999998865 334444 469999999999
Q ss_pred HHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCc--eEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHHHh
Q 000406 1463 IARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRA--TTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLA 1539 (1560)
Q Consensus 1463 LARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~~~--TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eLl~ 1539 (1560)
|||||.-+|++||||||||+||+-..++|++.|.++.+++ |.|+|||+++.+.. ||||+||++|+++|.++-+++..
T Consensus 152 IARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 152 IARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLS 231 (252)
T ss_pred HHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhc
Confidence 9999999999999999999999999999999999887665 99999999999987 99999999999999999999987
Q ss_pred hccChHHHH
Q 000406 1540 SHLNGVYAS 1548 (1560)
Q Consensus 1540 ~~~~g~y~~ 1548 (1560)
. ....|.+
T Consensus 232 ~-~~h~ytr 239 (252)
T COG1124 232 H-PSHPYTR 239 (252)
T ss_pred C-CccHHHH
Confidence 3 3444543
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=388.45 Aligned_cols=232 Identities=50% Similarity=0.818 Sum_probs=209.4
Q ss_pred EEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHHHhccEE
Q 000406 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIG 752 (1560)
Q Consensus 673 i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~ 752 (1560)
|+++|++++|++. ..+|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDPG--RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCCC--CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 4789999999632 45899999999999999999999999999999999999999999999999998888777888999
Q ss_pred EEecCCcCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHHhccCCCE
Q 000406 753 MVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRI 832 (1560)
Q Consensus 753 ~v~Q~~~lf~~Tv~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARAl~~~p~i 832 (1560)
|++|++.+|+.|++||+.++......+++...++..++.+.+..+|.|+++.++..+.+||||||||++|||||+++|++
T Consensus 79 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~l 158 (236)
T cd03253 79 VVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPI 158 (236)
T ss_pred EECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999987655455556666777788888999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCccccccCCEEEEEeCCeEEEecChhhHhhhcchHHHH
Q 000406 833 LLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLERGGAYHDL 906 (1560)
Q Consensus 833 llLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~D~i~vl~~G~iv~~G~~~~l~~~~~~~~~l 906 (1560)
|||||||++||+.+...+.+.|.++.+|+|+|++||+++.+..||++++|++|++++.|+.+++......|+..
T Consensus 159 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~~~~~~~~ 232 (236)
T cd03253 159 LLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLYAEM 232 (236)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhcccHHHHH
Confidence 99999999999999999999999886689999999999999889999999999999999998887655444443
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=400.85 Aligned_cols=221 Identities=23% Similarity=0.421 Sum_probs=187.7
Q ss_pred ccEEEEEEEEEcCCCC--CccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCC------
Q 000406 1312 LGIELKMVTFTYPSRP--EVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREI------ 1383 (1560)
Q Consensus 1312 ~~I~~~nVsf~Y~~~~--~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i------ 1383 (1560)
..|+++||+|+|+... ..++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+++.+.
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~ 99 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHEL 99 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccc
Confidence 3599999999996421 23699999999999999999999999999999999999999999999999998653
Q ss_pred ----------CHHHHhhceEEEcCCC--CCCCccHHHHHhcCC--CCCCHHHHHHHHHHHhHHHHHHhCCCCcc-ccccC
Q 000406 1384 ----------NVKWLRKQTALVGQEP--ALFAGTIRDNIALGN--PKASWAEIEEAAEEAYIHKFISSLPQGYE-TQVGE 1448 (1560)
Q Consensus 1384 ----------~l~~LR~~I~~VpQdp--~LF~gTIreNL~~g~--~~~sd~eI~~al~~a~l~~~I~~Lp~Gld-t~Vge 1448 (1560)
....+|++|+||+|+| .+|+.||+|||.++. ...+.++..+ ...+++..+ |++ .....
T Consensus 100 ~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~ 172 (320)
T PRK13631 100 ITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKK-----LAKFYLNKM--GLDDSYLER 172 (320)
T ss_pred cccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHH-----HHHHHHHHc--CCChhHhcC
Confidence 3567899999999998 699999999998762 1233333322 123444444 554 45677
Q ss_pred CCCCCChHHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCceEEEEecChHHHh-hcCEEEEEeCC
Q 000406 1449 SGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVS-KRATTIVVAHRLSTIR-EANMIAVVRDG 1526 (1560)
Q Consensus 1449 ~G~~LSGGQrQRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~-~~~TvI~IAHRlsti~-~aDrIlVLd~G 1526 (1560)
.+.+||||||||++|||||+++|+||||||||++||+.+++.+.+.|+++. +++|+|+|||+++.+. .||||++|++|
T Consensus 173 ~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G 252 (320)
T PRK13631 173 SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKG 252 (320)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 788999999999999999999999999999999999999999999998764 5789999999999875 59999999999
Q ss_pred EEEEecCHHHHHh
Q 000406 1527 AVVEYGSHETLLA 1539 (1560)
Q Consensus 1527 ~IvE~Gt~~eLl~ 1539 (1560)
+|++.|+|+++++
T Consensus 253 ~i~~~g~~~~~~~ 265 (320)
T PRK13631 253 KILKTGTPYEIFT 265 (320)
T ss_pred EEEEeCCHHHHhc
Confidence 9999999998764
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-41 Score=391.11 Aligned_cols=215 Identities=27% Similarity=0.350 Sum_probs=171.9
Q ss_pred CccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhh
Q 000406 1311 PLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRK 1390 (1560)
Q Consensus 1311 ~~~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~ 1390 (1560)
+.-+++.+|+|.|...+ .+.+++++++++.-.++++||++|+||||+++++.+-..|..|.+.+.+ |.
T Consensus 360 ~p~l~i~~V~f~y~p~~-y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~ 427 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTPSE-YQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RL 427 (582)
T ss_pred CCeeEEEeeeccCCCcc-hhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------cc
Confidence 34599999999997543 2799999999999999999999999999999999999999999988875 67
Q ss_pred ceEEEcCCCCCC-CccH--HHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHH
Q 000406 1391 QTALVGQEPALF-AGTI--RDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAI 1467 (1560)
Q Consensus 1391 ~I~~VpQdp~LF-~gTI--reNL~~g~~~~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLARAL 1467 (1560)
+|+|-.|.-+=| +-.+ -+-+.--.|..+++|+++.|...|+.--+...+ -..||||||-||++|-+.
T Consensus 428 ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~s----------i~~LSGGQKsrvafA~~~ 497 (582)
T KOG0062|consen 428 RIKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQS----------IASLSGGQKSRVAFAACT 497 (582)
T ss_pred eecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhcc----------ccccCCcchhHHHHHHHh
Confidence 888888876532 2221 111111135558899999988877654443322 146999999999999999
Q ss_pred ccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHHHhh-cCEEEEEeCCEEEEe-cCHHHHHhhccChH
Q 000406 1468 LKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEY-GSHETLLASHLNGV 1545 (1560)
Q Consensus 1468 Lr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~-Gt~~eLl~~~~~g~ 1545 (1560)
..+|.+|||||||..||.++-..+-++|+.. + .-||+|||+.+.|.. |+.++|.++|+|.-+ |.- ..
T Consensus 498 ~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F-~-GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ieg~~---------~~ 566 (582)
T KOG0062|consen 498 WNNPHLLVLDEPTNHLDRDSLGALAKALKNF-N-GGVVLVSHDEEFISSLCKELWVVEDGKVTPIEGGI---------DK 566 (582)
T ss_pred cCCCcEEEecCCCccccHHHHHHHHHHHHhc-C-CcEEEEECcHHHHhhcCceeEEEcCCcEEeeeccH---------HH
Confidence 9999999999999999999999999999864 3 459999999999987 999999999999873 221 24
Q ss_pred HHHHHHHhhhhcc
Q 000406 1546 YASLVRAETEANA 1558 (1560)
Q Consensus 1546 y~~l~~~q~~~~~ 1558 (1560)
|.++...+..+.+
T Consensus 567 yKkl~~~e~~~~~ 579 (582)
T KOG0062|consen 567 YKKLLGAELRAKA 579 (582)
T ss_pred HHHHHHHHHhhhh
Confidence 7777777665543
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=391.14 Aligned_cols=237 Identities=30% Similarity=0.500 Sum_probs=213.0
Q ss_pred CcccEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHHHh
Q 000406 669 VSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLR 748 (1560)
Q Consensus 669 ~~g~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr 748 (1560)
..|.|+++|++++|+.. ...+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...++
T Consensus 16 ~~~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 94 (257)
T cd03288 16 LGGEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLR 94 (257)
T ss_pred CCceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHh
Confidence 46789999999999742 24689999999999999999999999999999999999999999999999999888888888
Q ss_pred ccEEEEecCCcCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHHhcc
Q 000406 749 TQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIK 828 (1560)
Q Consensus 749 ~~i~~v~Q~~~lf~~Tv~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARAl~~ 828 (1560)
+.|+||+|++.+|++|++||+.+... ...+++.++.+..++.+++..+|.|+++.+++.+.+||||||||++|||||++
T Consensus 95 ~~i~~v~q~~~l~~~tv~~nl~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~ 173 (257)
T cd03288 95 SRLSIILQDPILFSGSIRFNLDPECK-CTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVR 173 (257)
T ss_pred hhEEEECCCCcccccHHHHhcCcCCC-CCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999876432 23445666777778889999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCccccccCCEEEEEeCCeEEEecChhhHhhh-cchHHHHH
Q 000406 829 DPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLER-GGAYHDLV 907 (1560)
Q Consensus 829 ~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~D~i~vl~~G~iv~~G~~~~l~~~-~~~~~~l~ 907 (1560)
+|++|||||||++||+.++..+.+.++++.+++|+|++||+++.+..||+|++|++|++++.|+++++.+. .+.|++++
T Consensus 174 ~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 253 (257)
T cd03288 174 KSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLV 253 (257)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHHHHH
Confidence 99999999999999999999999999987778999999999999988999999999999999999998764 34455554
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-42 Score=366.39 Aligned_cols=228 Identities=32% Similarity=0.470 Sum_probs=194.4
Q ss_pred ccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHH---HH
Q 000406 1312 LGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVK---WL 1388 (1560)
Q Consensus 1312 ~~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~---~L 1388 (1560)
..|++++|+++|.+ +.||+||||+|++||.+||+|+||||||||++++.|+..|++|+|+|+|.|+.+++.+ .+
T Consensus 7 ~~I~vr~v~~~fG~---~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~i 83 (263)
T COG1127 7 PLIEVRGVTKSFGD---RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEI 83 (263)
T ss_pred ceEEEeeeeeecCC---EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHH
Confidence 35999999999963 4699999999999999999999999999999999999999999999999999999864 56
Q ss_pred hhceEEEcCCCCCCCc-cHHHHHhcCC---CCCCHHHHHH----HHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHH
Q 000406 1389 RKQTALVGQEPALFAG-TIRDNIALGN---PKASWAEIEE----AAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQR 1460 (1560)
Q Consensus 1389 R~~I~~VpQdp~LF~g-TIreNL~~g~---~~~sd~eI~~----al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQR 1460 (1560)
|+++|+++|...||+. ||+||+.+.- .+.+++++++ .++.+||..-+. ..-...||||.+.|
T Consensus 84 r~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~----------~~~PsELSGGM~KR 153 (263)
T COG1127 84 RKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAA----------DLYPSELSGGMRKR 153 (263)
T ss_pred HhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhh----------hhCchhhcchHHHH
Confidence 9999999999999975 9999999852 2334444433 344455444311 12345799999999
Q ss_pred HHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHH
Q 000406 1461 IAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSK--RATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETL 1537 (1560)
Q Consensus 1461 LaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~--~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eL 1537 (1560)
+||||||.-+|+||++|||||+|||.+...+-+.|+++.+ +.|+|+|||+++++.. ||||+++.+|+|+..|+++||
T Consensus 154 vaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el 233 (263)
T COG1127 154 VALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEEL 233 (263)
T ss_pred HHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999987653 6899999999999987 899999999999999999999
Q ss_pred HhhccChHHHHHHHHh
Q 000406 1538 LASHLNGVYASLVRAE 1553 (1560)
Q Consensus 1538 l~~~~~g~y~~l~~~q 1553 (1560)
.+. .+.+..+++...
T Consensus 234 ~~s-d~P~v~qf~~G~ 248 (263)
T COG1127 234 LAS-DDPWVRQFFNGI 248 (263)
T ss_pred HhC-CCHHHHHHhcCC
Confidence 984 566666666543
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-42 Score=395.41 Aligned_cols=217 Identities=33% Similarity=0.511 Sum_probs=194.6
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhhce
Q 000406 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQT 1392 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~~I 1392 (1560)
.|+++||+.+|.+. . +|+|+||+|+.||.++|+||||||||||+++|+||.+|++|+|.|||.+++++++++ +.|
T Consensus 3 ~i~l~~v~K~yg~~--~-~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~i 77 (338)
T COG3839 3 ELELKNVRKSFGSF--E-VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGI 77 (338)
T ss_pred EEEEeeeEEEcCCc--e-eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCE
Confidence 58999999999632 2 899999999999999999999999999999999999999999999999999999975 799
Q ss_pred EEEcCCCCCCCc-cHHHHHhcCCCC------CCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 000406 1393 ALVGQEPALFAG-TIRDNIALGNPK------ASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIAR 1465 (1560)
Q Consensus 1393 ~~VpQdp~LF~g-TIreNL~~g~~~------~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLAR 1465 (1560)
++|+|+..||+- ||+|||.|+... .-++++.++++..++...+...| .+||||||||+||||
T Consensus 78 amVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P-----------~~LSGGQrQRVAlaR 146 (338)
T COG3839 78 AMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKP-----------LQLSGGQRQRVALAR 146 (338)
T ss_pred EEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCc-----------ccCChhhHHHHHHHH
Confidence 999999999975 999999998432 12466778888888888887776 379999999999999
Q ss_pred HHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHHHhhcc
Q 000406 1466 AILKGSRVLLLDEASSALDLESEKHVQDALRKVSK--RATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLASHL 1542 (1560)
Q Consensus 1466 ALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~--~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eLl~~~~ 1542 (1560)
||+++|++++||||.|+||+.....+...|+++.+ +.|+|.|||+-..++. +|||+||++|+|.+.|+|.|+..+ .
T Consensus 147 AlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~-P 225 (338)
T COG3839 147 ALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYER-P 225 (338)
T ss_pred HHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhC-c
Confidence 99999999999999999999999999999988654 5799999999998876 999999999999999999999984 4
Q ss_pred ChHH
Q 000406 1543 NGVY 1546 (1560)
Q Consensus 1543 ~g~y 1546 (1560)
...|
T Consensus 226 ~n~f 229 (338)
T COG3839 226 ANLF 229 (338)
T ss_pred cchh
Confidence 4444
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-42 Score=381.82 Aligned_cols=214 Identities=35% Similarity=0.587 Sum_probs=193.4
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecC-CCCHHHHhhc
Q 000406 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLR-EINVKWLRKQ 1391 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~-~i~l~~LR~~ 1391 (1560)
.++++|++|+|+++ .++|+++||+|++||.++|+|+||||||||+++|.|+++|++|.|.+||.++. ..+...+|++
T Consensus 3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 48999999999865 57999999999999999999999999999999999999999999999999998 4889999999
Q ss_pred eEEEcCCC--CCCCccHHHHHhcCCC--CCCHHH----HHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 000406 1392 TALVGQEP--ALFAGTIRDNIALGNP--KASWAE----IEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAI 1463 (1560)
Q Consensus 1392 I~~VpQdp--~LF~gTIreNL~~g~~--~~sd~e----I~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaL 1463 (1560)
+|+|+|+| ++|..||.+.++||.. ..+.+| +.++++.+++.++...- ..+||||||||+||
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~-----------p~~LSGGqkqRvaI 149 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRP-----------PFNLSGGQKQRVAI 149 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCC-----------ccccCCcceeeHHh
Confidence 99999999 7999999999999832 334444 56777777777664333 35799999999999
Q ss_pred HHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCC--ceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHHHh
Q 000406 1464 ARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKR--ATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLA 1539 (1560)
Q Consensus 1464 ARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~~--~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eLl~ 1539 (1560)
|.+|..+|+|||||||||+||+...+.+.+.++++.+. +|+|+|||+++.+.. |||++||++|+++.+|+|+++.+
T Consensus 150 A~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~ 228 (235)
T COG1122 150 AGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFN 228 (235)
T ss_pred hHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhh
Confidence 99999999999999999999999999999999998644 699999999999988 99999999999999999999987
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=382.03 Aligned_cols=220 Identities=34% Similarity=0.580 Sum_probs=202.8
Q ss_pred ccEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHHHhcc
Q 000406 671 GKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQ 750 (1560)
Q Consensus 671 g~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~ 750 (1560)
|.|+++|++++|+.. ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (221)
T cd03244 1 GDIEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSR 79 (221)
T ss_pred CcEEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhh
Confidence 468999999999742 2469999999999999999999999999999999999999999999999999988887788889
Q ss_pred EEEEecCCcCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHHhccCC
Q 000406 751 IGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDP 830 (1560)
Q Consensus 751 i~~v~Q~~~lf~~Tv~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARAl~~~p 830 (1560)
++|++|++.+++.|++|||.+... ...+++.++++..++.+++..+|.|+++..++.+.+||||||||++|||||+.+|
T Consensus 80 i~~~~q~~~l~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p 158 (221)
T cd03244 80 ISIIPQDPVLFSGTIRSNLDPFGE-YSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKS 158 (221)
T ss_pred EEEECCCCccccchHHHHhCcCCC-CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999987543 3566777788888889999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCccccccCCEEEEEeCCeEEEecC
Q 000406 831 RILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGN 892 (1560)
Q Consensus 831 ~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~D~i~vl~~G~iv~~G~ 892 (1560)
++|||||||++||+.+++.+.+.|+++.++.|+|++||+++.+..||++++|++|++++.|+
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 159 KILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 99999999999999999999999998877899999999999998899999999999998775
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-42 Score=365.40 Aligned_cols=223 Identities=32% Similarity=0.494 Sum_probs=193.6
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCC---HHHHh
Q 000406 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREIN---VKWLR 1389 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~---l~~LR 1389 (1560)
.|+++||+.+||+ ...+|+||||+|++||.|||+|+||||||||++.|.|+.+|++|+|+++|.++...+ +..+|
T Consensus 3 ~i~~~nl~k~yp~--~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 3 MIEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred eEEEeeeeeecCC--CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 4899999999984 357999999999999999999999999999999999999999999999999999987 66778
Q ss_pred hceEEEcCCCCCCCc-cHHHHHhcCCC--------------CCCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCC
Q 000406 1390 KQTALVGQEPALFAG-TIRDNIALGNP--------------KASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLS 1454 (1560)
Q Consensus 1390 ~~I~~VpQdp~LF~g-TIreNL~~g~~--------------~~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LS 1454 (1560)
++||+|+|.+.|-+. |+.+|+..|.- ..+.....++|+++++.++... +..+||
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~q-----------ra~~LS 149 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQ-----------RASTLS 149 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHH-----------HhccCC
Confidence 999999999998865 99999986632 1223456678888888765432 345799
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc--CCceEEEEecChHHHhh-cCEEEEEeCCEEEEe
Q 000406 1455 GGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVS--KRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEY 1531 (1560)
Q Consensus 1455 GGQrQRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~--~~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~ 1531 (1560)
|||+||++|||||..+|+|+|-|||+|+|||.+.+.|++.|++.. .|.|||+.-|.++.++. ||||+-|++|+|+-.
T Consensus 150 GGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfD 229 (258)
T COG3638 150 GGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFD 229 (258)
T ss_pred cchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEe
Confidence 999999999999999999999999999999999999999999864 56899999999999976 999999999999999
Q ss_pred cCHHHHHhhccChHHHHHHHH
Q 000406 1532 GSHETLLASHLNGVYASLVRA 1552 (1560)
Q Consensus 1532 Gt~~eLl~~~~~g~y~~l~~~ 1552 (1560)
|++.||-+ ..+.+.|..
T Consensus 230 g~~~el~~----~~~~~iYg~ 246 (258)
T COG3638 230 GPASELTD----EALDEIYGN 246 (258)
T ss_pred CChhhhhH----HHHHHHhcc
Confidence 99999654 344444443
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=387.22 Aligned_cols=212 Identities=36% Similarity=0.499 Sum_probs=182.0
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCH---HHHhh
Q 000406 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINV---KWLRK 1390 (1560)
Q Consensus 1314 I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l---~~LR~ 1390 (1560)
|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+. ..+|+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFGG---RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred CeEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 578999999963 359999999999999999999999999999999999999999999999999988764 56788
Q ss_pred ceEEEcCCCCCCCc-cHHHHHhcCCC---CCCHH----HHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHH
Q 000406 1391 QTALVGQEPALFAG-TIRDNIALGNP---KASWA----EIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIA 1462 (1560)
Q Consensus 1391 ~I~~VpQdp~LF~g-TIreNL~~g~~---~~sd~----eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLa 1462 (1560)
.++||||++.+|.. |++||+.++.. ..+.+ ++.++++..++.++ .......||||||||++
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~ 146 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGA-----------EDLYPAELSGGMKKRVA 146 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchh-----------hcCChhhCCHHHHHHHH
Confidence 99999999999986 99999987521 12332 23444444444332 22334579999999999
Q ss_pred HHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHHHh
Q 000406 1463 IARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSK--RATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLA 1539 (1560)
Q Consensus 1463 LARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~--~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eLl~ 1539 (1560)
|||||+++|+||||||||++||+.+.+.+.+.|++..+ ++|||+|||+++.+.. ||+|++|++|++++.|++++++.
T Consensus 147 ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (235)
T cd03261 147 LARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226 (235)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcC
Confidence 99999999999999999999999999999999998753 7899999999999876 99999999999999999999885
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-42 Score=386.76 Aligned_cols=212 Identities=35% Similarity=0.573 Sum_probs=182.4
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccc-----CCCccEEEECCEecCCCC--HH
Q 000406 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFY-----DPNQGKVMIEGVDLREIN--VK 1386 (1560)
Q Consensus 1314 I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~-----~p~~G~I~IdGvdi~~i~--l~ 1386 (1560)
|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|+|++ +|++|+|.++|.++...+ ..
T Consensus 1 i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 1 IELRDLNVYYGD---KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred CEEEEEEEEcCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence 578999999964 35999999999999999999999999999999999999 999999999999998876 56
Q ss_pred HHhhceEEEcCCCCCCCccHHHHHhcCCCC--C-C----HHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHH
Q 000406 1387 WLRKQTALVGQEPALFAGTIRDNIALGNPK--A-S----WAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQ 1459 (1560)
Q Consensus 1387 ~LR~~I~~VpQdp~LF~gTIreNL~~g~~~--~-s----d~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQ 1459 (1560)
.+|++++|+||++.+|..|++||+.++... . . ++++.++++..++.+.+...++ +.+|||||||
T Consensus 78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~LSgG~~q 148 (227)
T cd03260 78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGLSGGQQQ 148 (227)
T ss_pred HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccCCHHHHH
Confidence 788899999999999988999999874211 1 1 2345556666555544333211 4579999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHH
Q 000406 1460 RIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETL 1537 (1560)
Q Consensus 1460 RLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eL 1537 (1560)
|++|||||+++|+||||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 149 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (227)
T cd03260 149 RLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227 (227)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcccC
Confidence 999999999999999999999999999999999999988655899999999999875 999999999999999998764
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-42 Score=382.01 Aligned_cols=219 Identities=33% Similarity=0.577 Sum_probs=191.1
Q ss_pred cEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecC-CccHHHHhcc
Q 000406 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLK-SLQVKWLRTQ 750 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~-~~~~~~lr~~ 750 (1560)
.|+++|++|+|+.+ .++|+++||+|++||.++|+|+||||||||+++|.|+++|++|.|.++|.++. ..+...+|++
T Consensus 3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 48899999999854 57999999999999999999999999999999999999999999999999988 4778899999
Q ss_pred EEEEecCC--cCccccHHHHHhcCCCCC--CHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHHh
Q 000406 751 IGMVGQEP--ILFATSILENVLMGKENA--TMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAM 826 (1560)
Q Consensus 751 i~~v~Q~~--~lf~~Tv~eNi~~g~~~~--~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARAl 826 (1560)
+|||+|+| .+|..||.|.++||..+. ..+++.+..+.+ +.. .|+.....+.+.+||||||||+|||.+|
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~-----l~~--vgl~~~~~r~p~~LSGGqkqRvaIA~vL 153 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEA-----LEL--VGLEELLDRPPFNLSGGQKQRVAIAGVL 153 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHH-----HHH--cCchhhccCCccccCCcceeeHHhhHHH
Confidence 99999999 789999999999997643 233333222211 222 2454556677889999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhHhhh
Q 000406 827 IKDPRILLLDEPTSALDSESESIVQQAIDKISV--GRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLER 899 (1560)
Q Consensus 827 ~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l~~~ 899 (1560)
+.+|+|||||||||+||+...+.+.+.++++.+ |+|+|++||+++.+.. |||+++|++|+++.+|+|+++.+.
T Consensus 154 a~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 154 AMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred HcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 999999999999999999999999999999853 5899999999999977 999999999999999999888753
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=348.70 Aligned_cols=208 Identities=34% Similarity=0.548 Sum_probs=188.4
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhhceE
Q 000406 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTA 1393 (1560)
Q Consensus 1314 I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~~I~ 1393 (1560)
|.+++|.|.|..- ==.++++|++||+|||+||||||||||+++++||..|.+|+|+|+|+|....++. ++=++
T Consensus 2 l~L~~V~~~y~~~-----~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RPVS 74 (231)
T COG3840 2 LALDDVRFSYGHL-----PMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVS 74 (231)
T ss_pred ccccceEEeeCcc-----eEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCChh
Confidence 5688999999632 2468999999999999999999999999999999999999999999999888775 46799
Q ss_pred EEcCCCCCCC-ccHHHHHhcCC-CC-----CCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 000406 1394 LVGQEPALFA-GTIRDNIALGN-PK-----ASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARA 1466 (1560)
Q Consensus 1394 ~VpQdp~LF~-gTIreNL~~g~-~~-----~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLARA 1466 (1560)
+++||..||. -||++|+.+|. |. ...+.+..++..+|+..+...||. .||||||||+||||+
T Consensus 75 mlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~-----------~LSGGqRQRvALARc 143 (231)
T COG3840 75 MLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG-----------ELSGGQRQRVALARC 143 (231)
T ss_pred hhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc-----------ccCchHHHHHHHHHH
Confidence 9999999997 49999999983 32 234678999999999999999994 699999999999999
Q ss_pred HccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc--CCceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHHHh
Q 000406 1467 ILKGSRVLLLDEASSALDLESEKHVQDALRKVS--KRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLA 1539 (1560)
Q Consensus 1467 LLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~--~~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eLl~ 1539 (1560)
|+|+-|||+||||.|+||+.-.+++...+.+++ ++.|+++|||.++.++. +||++++++|||++.|+-+++++
T Consensus 144 lvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~ 219 (231)
T COG3840 144 LVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLS 219 (231)
T ss_pred HhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhc
Confidence 999999999999999999999999999998876 35799999999999876 99999999999999999999997
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=404.10 Aligned_cols=220 Identities=30% Similarity=0.514 Sum_probs=186.5
Q ss_pred EEEEEEEEEcCCCC-CccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHH---HHh
Q 000406 673 IEFKGVTFAYPSRP-ETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVK---WLR 748 (1560)
Q Consensus 673 i~~~~vs~~y~~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~---~lr 748 (1560)
|+++||+++|+... ..++|+||||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++..++.. .+|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999996322 24699999999999999999999999999999999999999999999999999887654 357
Q ss_pred ccEEEEecCCcCcc-ccHHHHHhcCCCC--CCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHH
Q 000406 749 TQIGMVGQEPILFA-TSILENVLMGKEN--ATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARA 825 (1560)
Q Consensus 749 ~~i~~v~Q~~~lf~-~Tv~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARA 825 (1560)
++|+||||++.+|+ .||+||+.++... ...++..+ .+.+.++.+ |+....+..+.+|||||||||+||||
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~-----~v~e~l~~v--gL~~~~~~~~~~LSgGqkQRV~IARA 154 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKR-----KVTELLALV--GLGDKHDSYPSNLSGGQKQRVAIARA 154 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHHH
Confidence 89999999999996 5999999886421 12222211 112233333 55555667788999999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhHhhh
Q 000406 826 MIKDPRILLLDEPTSALDSESESIVQQAIDKIS--VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLER 899 (1560)
Q Consensus 826 l~~~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l~~~ 899 (1560)
|+.+|+|||||||||+||+.+...+.+.|+++. .|.|+|+|||+++.+.. ||+|++|++|++++.|++++++..
T Consensus 155 L~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~~ 231 (343)
T TIGR02314 155 LASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSH 231 (343)
T ss_pred HHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHcC
Confidence 999999999999999999999999999999874 38999999999999976 999999999999999999998753
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-41 Score=369.10 Aligned_cols=207 Identities=36% Similarity=0.511 Sum_probs=173.8
Q ss_pred EEEEEEEEEcCCCC-CccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHH---H-
Q 000406 1314 IELKMVTFTYPSRP-EVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKW---L- 1388 (1560)
Q Consensus 1314 I~~~nVsf~Y~~~~-~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~---L- 1388 (1560)
++++||+..|.... ...+|++|||+|++||.|||+||||||||||+++|.++..|++|.|.++|.|+..++.+. +
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 67999999996432 246999999999999999999999999999999999999999999999999999998543 4
Q ss_pred hhceEEEcCCCCCCCc-cHHHHHhcC----CCC--CCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 000406 1389 RKQTALVGQEPALFAG-TIRDNIALG----NPK--ASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRI 1461 (1560)
Q Consensus 1389 R~~I~~VpQdp~LF~g-TIreNL~~g----~~~--~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRL 1461 (1560)
|++||+|+|+..|++. |++||+.+. ... ...+.+.+.++.+++.+.... ....+||||||||+
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~----------~~p~eLSGGqqQRV 151 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLK----------KKPSELSGGQQQRV 151 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhcc----------CCchhcCHHHHHHH
Confidence 4679999999998865 999999842 111 112334455555555543331 23457999999999
Q ss_pred HHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CceEEEEecChHHHhhcCEEEEEeCCEEEE
Q 000406 1462 AIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSK--RATTIVVAHRLSTIREANMIAVVRDGAVVE 1530 (1560)
Q Consensus 1462 aLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~--~~TvI~IAHRlsti~~aDrIlVLd~G~IvE 1530 (1560)
||||||+.+|+|++.||||.+||.+|.+.|.+.+++..+ ++|+|+|||+......|||++.|.+|++.+
T Consensus 152 AIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~~ 222 (226)
T COG1136 152 AIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222 (226)
T ss_pred HHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeeee
Confidence 999999999999999999999999999999999998753 689999999999999999999999999544
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-41 Score=382.95 Aligned_cols=218 Identities=49% Similarity=0.791 Sum_probs=198.6
Q ss_pred CccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhh
Q 000406 1311 PLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRK 1390 (1560)
Q Consensus 1311 ~~~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~ 1390 (1560)
.+.++++|++++|+.+...++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+...+|+
T Consensus 9 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 88 (226)
T cd03248 9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS 88 (226)
T ss_pred CceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHh
Confidence 34699999999997532346999999999999999999999999999999999999999999999999998888778889
Q ss_pred ceEEEcCCCCCCCccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHccC
Q 000406 1391 QTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKG 1470 (1560)
Q Consensus 1391 ~I~~VpQdp~LF~gTIreNL~~g~~~~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLARALLr~ 1470 (1560)
.++|+||++.+|++|++||+.++.......++.+..+..++.+++..+|.|+++.+.....+||||||||++|||||+++
T Consensus 89 ~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~ 168 (226)
T cd03248 89 KVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRN 168 (226)
T ss_pred hEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999976544445566666667788899999998999999999999999999999999999999
Q ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHHHhhcCEEEEEeCCEE
Q 000406 1471 SRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIREANMIAVVRDGAV 1528 (1560)
Q Consensus 1471 p~ILILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlsti~~aDrIlVLd~G~I 1528 (1560)
|++|||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+..||+|++|++|++
T Consensus 169 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 169 PQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 9999999999999999999999999988777899999999999988999999999975
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=376.29 Aligned_cols=210 Identities=28% Similarity=0.490 Sum_probs=180.6
Q ss_pred cEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHHHhccE
Q 000406 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQI 751 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 751 (1560)
.|+++|++++|.++ ++|+||||++++|++++|+||||||||||+|+|+|+++|.+|+|.+.|.+++.... +.+|
T Consensus 4 ~i~v~nl~v~y~~~---~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~I 77 (254)
T COG1121 4 MIEVENLTVSYGNR---PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRI 77 (254)
T ss_pred EEEEeeeEEEECCE---eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeE
Confidence 58999999999742 49999999999999999999999999999999999999999999999987765322 4589
Q ss_pred EEEecCC---cCccccHHHHHhcCCCCC----------CHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHH
Q 000406 752 GMVGQEP---ILFATSILENVLMGKENA----------TMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQ 818 (1560)
Q Consensus 752 ~~v~Q~~---~lf~~Tv~eNi~~g~~~~----------~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQ 818 (1560)
|||||.. |-|+-||+|-+.+|.... +.+++.++++.+++.++ .++...+|||||+|
T Consensus 78 gYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~-----------~~r~i~~LSGGQ~Q 146 (254)
T COG1121 78 GYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDL-----------RDRQIGELSGGQKQ 146 (254)
T ss_pred EEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhh-----------hCCcccccCcHHHH
Confidence 9999965 568899999999985321 12556666666665543 34455689999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhH
Q 000406 819 RIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKIS-VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQL 896 (1560)
Q Consensus 819 RialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l 896 (1560)
|+.|||||+++|++|||||||+++|+.++..+.+.|+++. +|+||++||||++.+.. +|+|+.| |++++..|++++.
T Consensus 147 RV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~L-n~~~~~~G~~~~~ 225 (254)
T COG1121 147 RVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICL-NRHLIASGPPEEV 225 (254)
T ss_pred HHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEE-cCeeEeccChhhc
Confidence 9999999999999999999999999999999999999985 49999999999999876 9999999 5678899999998
Q ss_pred hhh
Q 000406 897 LER 899 (1560)
Q Consensus 897 ~~~ 899 (1560)
+..
T Consensus 226 ~~~ 228 (254)
T COG1121 226 LTE 228 (254)
T ss_pred cCH
Confidence 753
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-41 Score=385.81 Aligned_cols=217 Identities=29% Similarity=0.460 Sum_probs=189.4
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccC---CCccEEEECCEecCCCCHHHHh
Q 000406 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYD---PNQGKVMIEGVDLREINVKWLR 1389 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~---p~~G~I~IdGvdi~~i~l~~LR 1389 (1560)
.|+++||+++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||.++...+...+|
T Consensus 2 ~~~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~ 78 (246)
T PRK14269 2 IAKTTNLNLFYGK---KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR 78 (246)
T ss_pred ceeeeeeEEEECC---EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence 3789999999963 359999999999999999999999999999999999985 6899999999999988888889
Q ss_pred hceEEEcCCCCCCCccHHHHHhcCCC--------CCCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 000406 1390 KQTALVGQEPALFAGTIRDNIALGNP--------KASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRI 1461 (1560)
Q Consensus 1390 ~~I~~VpQdp~LF~gTIreNL~~g~~--------~~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRL 1461 (1560)
+.++|+||++.+|..|++||+.++.. ...++++.++++.+++.+++.. .....+.+||||||||+
T Consensus 79 ~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~qrv 151 (246)
T PRK14269 79 KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKD-------KLKQNALALSGGQQQRL 151 (246)
T ss_pred hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhH-------HhcCCcccCCHHHHHHH
Confidence 99999999999999999999986521 1112345566666666444332 23455678999999999
Q ss_pred HHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHHHh
Q 000406 1462 AIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLA 1539 (1560)
Q Consensus 1462 aLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eLl~ 1539 (1560)
+|||||+++|+||||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 152 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 230 (246)
T PRK14269 152 CIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFE 230 (246)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999999988778999999999998865 99999999999999999999986
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-41 Score=374.94 Aligned_cols=209 Identities=31% Similarity=0.509 Sum_probs=185.4
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhhce
Q 000406 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQT 1392 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~~I 1392 (1560)
.|+++|++|+|.++ +||+||||+|++||.+||+||||||||||+|+++|+++|.+|+|.+.|.+++.... +.+|
T Consensus 4 ~i~v~nl~v~y~~~---~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~I 77 (254)
T COG1121 4 MIEVENLTVSYGNR---PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRI 77 (254)
T ss_pred EEEEeeeEEEECCE---eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeE
Confidence 59999999999643 49999999999999999999999999999999999999999999999998776543 5789
Q ss_pred EEEcCCC---CCCCccHHHHHhcCCCC----------CCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHH
Q 000406 1393 ALVGQEP---ALFAGTIRDNIALGNPK----------ASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQ 1459 (1560)
Q Consensus 1393 ~~VpQdp---~LF~gTIreNL~~g~~~----------~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQ 1459 (1560)
|||||.. .-|+-||+|=+.+|... .+.+++.+||+.+++.++.. -++| .|||||+|
T Consensus 78 gYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~-------r~i~----~LSGGQ~Q 146 (254)
T COG1121 78 GYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRD-------RQIG----ELSGGQKQ 146 (254)
T ss_pred EEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhC-------Cccc----ccCcHHHH
Confidence 9999966 35789999999887321 23488999999999998753 3455 59999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC-CceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHH
Q 000406 1460 RIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSK-RATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETL 1537 (1560)
Q Consensus 1460 RLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~-~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eL 1537 (1560)
|+.|||||+.+|++|||||||+++|+.++..|.+.|+++.+ |||||+|+|+++.+.. +|+|+.|. ++++..|++++.
T Consensus 147 RV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~~~ 225 (254)
T COG1121 147 RVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEEV 225 (254)
T ss_pred HHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChhhc
Confidence 99999999999999999999999999999999999998764 7999999999999976 99999997 667889999999
Q ss_pred Hh
Q 000406 1538 LA 1539 (1560)
Q Consensus 1538 l~ 1539 (1560)
+.
T Consensus 226 ~~ 227 (254)
T COG1121 226 LT 227 (254)
T ss_pred cC
Confidence 86
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-41 Score=392.54 Aligned_cols=216 Identities=31% Similarity=0.500 Sum_probs=189.1
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhhce
Q 000406 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQT 1392 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~~I 1392 (1560)
.|+++||+++|+.....++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 38999999999642224599999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEcCCC--CCCCccHHHHHhcCCC--CCCH----HHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 000406 1393 ALVGQEP--ALFAGTIRDNIALGNP--KASW----AEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIA 1464 (1560)
Q Consensus 1393 ~~VpQdp--~LF~gTIreNL~~g~~--~~sd----~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLA 1464 (1560)
+||+|+| .++..||+|||.++.. ..+. +++.++++.+++.++.... ..+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-----------~~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKERE-----------PARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCC-----------cccCCHHHHHHHHHH
Confidence 9999998 4667899999987621 1222 3456667776666554443 357999999999999
Q ss_pred HHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CceEEEEecChHHHhhcCEEEEEeCCEEEEecCHHHHHh
Q 000406 1465 RAILKGSRVLLLDEASSALDLESEKHVQDALRKVSK--RATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETLLA 1539 (1560)
Q Consensus 1465 RALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~--~~TvI~IAHRlsti~~aDrIlVLd~G~IvE~Gt~~eLl~ 1539 (1560)
|||+++|+||||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+..||||++|++|++++.|+++++.+
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 229 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFS 229 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHc
Confidence 999999999999999999999999999999998753 789999999999998899999999999999999999876
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-42 Score=352.39 Aligned_cols=208 Identities=31% Similarity=0.478 Sum_probs=186.9
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHH---HHhh
Q 000406 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVK---WLRK 1390 (1560)
Q Consensus 1314 I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~---~LR~ 1390 (1560)
|+|+||+.+|+.. +++|+||||+|++||.+=|+||||||||||+++|++...|+.|+|.++|.|++.+.-+ -||+
T Consensus 2 I~f~~V~k~Y~~g--~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 2 IRFENVSKAYPGG--REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred eeehhhhhhcCCC--chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 7999999999865 5699999999999999999999999999999999999999999999999999988754 5899
Q ss_pred ceEEEcCCCCCCC-ccHHHHHhcCCC--CC----CHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 000406 1391 QTALVGQEPALFA-GTIRDNIALGNP--KA----SWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAI 1463 (1560)
Q Consensus 1391 ~I~~VpQdp~LF~-gTIreNL~~g~~--~~----sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaL 1463 (1560)
+||+|+||..|+. -|+.||+++.-. .. -.+++.++|+.++|.+....+|. .|||||+||+||
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~-----------~LSGGEQQRvaI 148 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPS-----------QLSGGEQQRVAI 148 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCcc-----------ccCchHHHHHHH
Confidence 9999999998775 599999997531 11 23567899999999999999984 699999999999
Q ss_pred HHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCceEEEEecChHHHhhc-CEEEEEeCCEEEEecCH
Q 000406 1464 ARAILKGSRVLLLDEASSALDLESEKHVQDALRKVS-KRATTIVVAHRLSTIREA-NMIAVVRDGAVVEYGSH 1534 (1560)
Q Consensus 1464 ARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~-~~~TvI~IAHRlsti~~a-DrIlVLd~G~IvE~Gt~ 1534 (1560)
|||++.+|++||-||||-|||+++...|++.+.+.. .|.|||+.||+.+.+..+ -|++.+++|+++....+
T Consensus 149 ARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~~ 221 (223)
T COG2884 149 ARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDESR 221 (223)
T ss_pred HHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecccc
Confidence 999999999999999999999999999999999874 578999999999999885 68999999999876543
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=366.30 Aligned_cols=218 Identities=32% Similarity=0.487 Sum_probs=180.3
Q ss_pred cEEEEEEEEEcCCCC-CccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCc-cHHHHhc
Q 000406 672 KIEFKGVTFAYPSRP-ETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSL-QVKWLRT 749 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~-~~~~lr~ 749 (1560)
.|+++|+++.|+... ..++|+||||+|.+||+++|+|+||||||||.++|+|+.+|++|+|.++|.++... ..+..++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 489999999997532 11489999999999999999999999999999999999999999999999877654 3346778
Q ss_pred cEEEEecCCc--Ccc-ccHHHHHhcCCCC----CCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHH
Q 000406 750 QIGMVGQEPI--LFA-TSILENVLMGKEN----ATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIAL 822 (1560)
Q Consensus 750 ~i~~v~Q~~~--lf~-~Tv~eNi~~g~~~----~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRial 822 (1560)
.|-+|||||. |-+ .||++-|.-+... ...+++.++++.+++. .....+.+.+|||||||||||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~----------~~~l~R~P~eLSGGQ~QRiaI 152 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLP----------PSFLDRRPHELSGGQRQRIAI 152 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCC----------HHHHhcCchhcChhHHHHHHH
Confidence 8999999995 333 3887776543322 1223334444443321 234567788999999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhHhhh
Q 000406 823 ARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISV--GRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLER 899 (1560)
Q Consensus 823 ARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l~~~ 899 (1560)
||||.-+|++||||||||+||+..+..|++.+.++.+ +-|.|+|||++..+.+ ||||+||++|+++|.++..++...
T Consensus 153 ARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~ 232 (252)
T COG1124 153 ARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSH 232 (252)
T ss_pred HHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcC
Confidence 9999999999999999999999999999999998854 6699999999999987 999999999999999999998765
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-38 Score=381.11 Aligned_cols=503 Identities=15% Similarity=0.148 Sum_probs=356.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000406 353 GALINGGALPWYSYFFGNFVNKIANESSDPDKTQMMKDAEKICLLMTVLAAIVMMGAYLEITCWRLVGERSAQRIRTKYL 432 (1560)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~lr~~l~ 432 (1560)
..++......+...|.+.+.+.+.... .......+.++..++++.++...++.++...+..++..-|-..++
T Consensus 55 ~~l~~v~~~v~~~~w~~~~~~aL~~~d--------~~~f~~~l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~ 126 (604)
T COG4178 55 LILLSVRGQVLLNDWNGPFYNALARRD--------LAAFWQQLQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLL 126 (604)
T ss_pred HHHHHhheeeeeHhhhhHHHHHHHHhh--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444445555555555544221 122333455666666666677777777777777788888888888
Q ss_pred HHHHhcCchhhccCCChh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------
Q 000406 433 RAVLRQDIAFFDTEVSTS------DIMHGISSDIAQIQEVMGEKVAHFAHNIFTFICGYTVGFLRS-------------- 492 (1560)
Q Consensus 433 ~~ll~~~l~ffd~~~~~G------~i~~r~s~Dv~~i~~~l~~~l~~~i~~i~~~i~~~ii~~~~s-------------- 492 (1560)
++-+...-.|+. . ..| -.=+|+.+|+..+-+........++.++.+++.-.++.+-.+
T Consensus 127 ~~wl~~~~~y~l-~-~~~~~~~~dNpDQRi~eDi~~~t~~t~~l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I 204 (604)
T COG4178 127 DRWLDPRRYYRL-A-QAGGIGLIDNPDQRIQEDIRNFTETTLDLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGI 204 (604)
T ss_pred HHHhcCCchHHH-H-hcccccCCCChHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHccCcceEeeccccccc
Confidence 888888744442 2 222 133799999999988777777777777766665544444222
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHhHhHHHhH
Q 000406 493 -WKVSLVVLSVTPLMMFCGMAYKAVYVGLTSKEEASYRRAGSVAEQAISSIRTVFSFVAEDHFAVRYAGLLADSIPFGAK 571 (1560)
Q Consensus 493 -~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIka~~~e~~~~~~~~~~~~~~~~~~~k 571 (1560)
..+..++++.+++--++..++.+.+.++.....+..+..-....-.-++.+.|-.|+.|+...++..+........-.+
T Consensus 205 ~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~Lvrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~ 284 (604)
T COG4178 205 PGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYSLVRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRR 284 (604)
T ss_pred chHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 1222222223333333444556666666655555555555555667788889999999999888777665554432222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 000406 572 LGFAKGAGMGVIYLVTYATWALAFWYGSILVARKELSGGAAIACFFGVNVGGRGLALSLSYFAQFAQGTVAATRVFEIID 651 (1560)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~ls~g~~~~~l~~~~~~~~~l~~~~~~~~~~~~a~~a~~Ri~~~l~ 651 (1560)
..........+.....++..++-+..++-....|.++.|.+.....++......+......+..+..-.+...|+.+|.+
T Consensus 285 l~~~~~~l~~~~~gy~~~s~v~P~li~ap~~f~g~i~~G~lmqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ 364 (604)
T COG4178 285 LVRAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQITFGGLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQ 364 (604)
T ss_pred HHHHHHhhHHhhhhhhHHHHHHHHHhccHhhhcCcChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 22222111112222222222222333445567899999999998888888888999999999999999999999999975
Q ss_pred cCC--CCCCCCCCC--CcC---CCCcccEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcC
Q 000406 652 RVP--EIDPYNSEG--RKL---SSVSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERF 724 (1560)
Q Consensus 652 ~~~--~~~~~~~~~--~~~---~~~~g~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~ 724 (1560)
... +.++..... ... ......|+++|++..-|.. ...|+++||.+++||.+.|.|+||||||||+++|+|+
T Consensus 365 ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~~--~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGL 442 (604)
T COG4178 365 ALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDG--QTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGL 442 (604)
T ss_pred HHHhccCcccccCcccccccccccccceeEEeeeeEECCCC--CeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 432 111100000 000 0014689999999998853 4689999999999999999999999999999999999
Q ss_pred CCCCccEEEECCeecCCccHHHHhccEEEEecCCcCccccHHHHHhcCCCC--CCHHHHHHHHHHhhhHHHHHhCCCCCC
Q 000406 725 YDPTKGLITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKEN--ATMKEAVAACKAASAHSFISELPLGYD 802 (1560)
Q Consensus 725 ~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Tv~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~gl~ 802 (1560)
++--+|+|.+... ..+-|+||.|++-.||.||-|+++... .+++++.+++.++++.++++++.. .+
T Consensus 443 WP~g~G~I~~P~~-----------~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~-~~ 510 (604)
T COG4178 443 WPWGSGRISMPAD-----------SALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDE-ED 510 (604)
T ss_pred CccCCCceecCCC-----------CceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhc-cC
Confidence 9999999977521 358999999999999999999998765 678999999999999999998743 22
Q ss_pred cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCccccccCCEEEEE
Q 000406 803 TQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKNANTIVVL 882 (1560)
Q Consensus 803 t~~~~~g~~LSgGQrQRialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~D~i~vl 882 (1560)
. =...||+||||||++||.|+++|++++|||+|||||++++..+.+.+++...+.|+|-|.||.......++.+-+
T Consensus 511 ~----W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l 586 (604)
T COG4178 511 R----WDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLEL 586 (604)
T ss_pred c----HhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccchhhHHHHhhheee
Confidence 2 335799999999999999999999999999999999999999999999988899999999999887766666555
Q ss_pred e
Q 000406 883 D 883 (1560)
Q Consensus 883 ~ 883 (1560)
.
T Consensus 587 ~ 587 (604)
T COG4178 587 L 587 (604)
T ss_pred c
Confidence 4
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-41 Score=372.95 Aligned_cols=206 Identities=37% Similarity=0.593 Sum_probs=183.7
Q ss_pred CCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHH
Q 000406 1309 SKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWL 1388 (1560)
Q Consensus 1309 ~~~~~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~L 1388 (1560)
+..+.++++|++++|+.. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+...+
T Consensus 2 ~~~~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 80 (207)
T cd03369 2 PEHGEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDL 80 (207)
T ss_pred CCCCeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHH
Confidence 345579999999999642 2369999999999999999999999999999999999999999999999999998888888
Q ss_pred hhceEEEcCCCCCCCccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHc
Q 000406 1389 RKQTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAIL 1468 (1560)
Q Consensus 1389 R~~I~~VpQdp~LF~gTIreNL~~g~~~~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLARALL 1468 (1560)
|+.|+||||+|.+|++|+++|+.+.. ..+++++.++++ +......|||||+||++||||++
T Consensus 81 ~~~i~~v~q~~~~~~~tv~~~l~~~~-~~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~ 141 (207)
T cd03369 81 RSSLTIIPQDPTLFSGTIRSNLDPFD-EYSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALL 141 (207)
T ss_pred HhhEEEEecCCcccCccHHHHhcccC-CCCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHh
Confidence 99999999999999999999998753 234444444433 23456789999999999999999
Q ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHHHhhcCEEEEEeCCEEEEecCH
Q 000406 1469 KGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGSH 1534 (1560)
Q Consensus 1469 r~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlsti~~aDrIlVLd~G~IvE~Gt~ 1534 (1560)
++|+||||||||++||+.+...+.+.|++..+++|+|+|||+++.+..||+|++|++|++++.|++
T Consensus 142 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 142 KRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred hCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 999999999999999999999999999988778999999999999988999999999999998864
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-41 Score=377.02 Aligned_cols=220 Identities=40% Similarity=0.690 Sum_probs=198.2
Q ss_pred ccEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHHHhcc
Q 000406 671 GKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQ 750 (1560)
Q Consensus 671 g~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~ 750 (1560)
+.|+++|+++.|+.. ..++|+|+||+|++|++++|+||||||||||+++|+|+.+|++|+|.++|.++...+...+++.
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (220)
T cd03245 1 GRIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRN 79 (220)
T ss_pred CeEEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 358999999999642 2468999999999999999999999999999999999999999999999999887776677888
Q ss_pred EEEEecCCcCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHHhccCC
Q 000406 751 IGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDP 830 (1560)
Q Consensus 751 i~~v~Q~~~lf~~Tv~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARAl~~~p 830 (1560)
++|++|++.+|..|+.||+.++......+++.+.++..++.+.+...|.|+++.+.+...+||||||||++||||++.+|
T Consensus 80 i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p 159 (220)
T cd03245 80 IGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDP 159 (220)
T ss_pred EEEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCC
Confidence 99999999999889999998875444455666677777888889999999999998888999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCccccccCCEEEEEeCCeEEEec
Q 000406 831 RILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIG 891 (1560)
Q Consensus 831 ~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~D~i~vl~~G~iv~~G 891 (1560)
++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+..||+|++|++|++++.|
T Consensus 160 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 160 PILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 9999999999999999999999999886568999999999988679999999999998754
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-41 Score=400.36 Aligned_cols=227 Identities=30% Similarity=0.506 Sum_probs=188.4
Q ss_pred EEEEEEEEEcCCCC-CccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHH---Hh
Q 000406 1314 IELKMVTFTYPSRP-EVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKW---LR 1389 (1560)
Q Consensus 1314 I~~~nVsf~Y~~~~-~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~---LR 1389 (1560)
|+++||+++|+... +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++..++... +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999996211 346999999999999999999999999999999999999999999999999999887654 47
Q ss_pred hceEEEcCCCCCCC-ccHHHHHhcCCC--CCCHH----HHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHH
Q 000406 1390 KQTALVGQEPALFA-GTIRDNIALGNP--KASWA----EIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIA 1462 (1560)
Q Consensus 1390 ~~I~~VpQdp~LF~-gTIreNL~~g~~--~~sd~----eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLa 1462 (1560)
++|+||||++.+|. .|++||+.++.. ..+.+ ++.++++..++. ........+||||||||++
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~-----------~~~~~~~~~LSgGq~qRv~ 150 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLS-----------DKADRYPAQLSGGQKQRVA 150 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-----------hhhhCChhhCCHHHHHHHH
Confidence 89999999999886 699999987521 12222 233444444433 3333344579999999999
Q ss_pred HHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHHHh
Q 000406 1463 IARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSK--RATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLA 1539 (1560)
Q Consensus 1463 LARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~--~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eLl~ 1539 (1560)
|||||+.+|+||||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|++++++.
T Consensus 151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~ 230 (343)
T PRK11153 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFS 230 (343)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999998753 6899999999999876 99999999999999999999986
Q ss_pred hccChHHHHHHH
Q 000406 1540 SHLNGVYASLVR 1551 (1560)
Q Consensus 1540 ~~~~g~y~~l~~ 1551 (1560)
+..+.....++.
T Consensus 231 ~~~~~~~~~~~~ 242 (343)
T PRK11153 231 HPKHPLTREFIQ 242 (343)
T ss_pred CCCcHHHHHHHh
Confidence 322334444543
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-41 Score=399.91 Aligned_cols=212 Identities=31% Similarity=0.504 Sum_probs=186.2
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhhce
Q 000406 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQT 1392 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~~I 1392 (1560)
.|+++||+++|.+ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...++. +++|
T Consensus 6 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 80 (351)
T PRK11432 6 FVVLKNITKRFGS---NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ--QRDI 80 (351)
T ss_pred EEEEEeEEEEECC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 5999999999963 4589999999999999999999999999999999999999999999999999887754 5789
Q ss_pred EEEcCCCCCCCc-cHHHHHhcCCC--CCC----HHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 000406 1393 ALVGQEPALFAG-TIRDNIALGNP--KAS----WAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIAR 1465 (1560)
Q Consensus 1393 ~~VpQdp~LF~g-TIreNL~~g~~--~~s----d~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLAR 1465 (1560)
+||+|++.||+. |++|||.++.. ..+ .+++.++++..++.++.... ...||||||||+||||
T Consensus 81 g~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~-----------~~~LSgGq~QRVaLAR 149 (351)
T PRK11432 81 CMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRY-----------VDQISGGQQQRVALAR 149 (351)
T ss_pred EEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCC-----------hhhCCHHHHHHHHHHH
Confidence 999999999975 99999998632 122 24556666666665544333 4579999999999999
Q ss_pred HHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHHHhh
Q 000406 1466 AILKGSRVLLLDEASSALDLESEKHVQDALRKVSK--RATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLAS 1540 (1560)
Q Consensus 1466 ALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~--~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eLl~~ 1540 (1560)
||+++|+|||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+.. ||||+||++|+|++.|+++++.++
T Consensus 150 aL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~ 227 (351)
T PRK11432 150 ALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQ 227 (351)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999999999999998754 6899999999999865 999999999999999999999874
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-41 Score=400.43 Aligned_cols=213 Identities=28% Similarity=0.465 Sum_probs=187.4
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhhce
Q 000406 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQT 1392 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~~I 1392 (1560)
.|+++||+++|++ +..+|+|+||+|++||.+||+||||||||||+++|+|+++|++|+|.+||.++.++++. ++.|
T Consensus 3 ~l~i~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 78 (356)
T PRK11650 3 GLKLQAVRKSYDG--KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDI 78 (356)
T ss_pred EEEEEeEEEEeCC--CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 3899999999942 24699999999999999999999999999999999999999999999999999988764 4789
Q ss_pred EEEcCCCCCCC-ccHHHHHhcCCC--CCCH----HHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 000406 1393 ALVGQEPALFA-GTIRDNIALGNP--KASW----AEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIAR 1465 (1560)
Q Consensus 1393 ~~VpQdp~LF~-gTIreNL~~g~~--~~sd----~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLAR 1465 (1560)
+||||++.+|+ .||+|||.++.. ..+. +++.++++..++.++....| .+||||||||+||||
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRvalAR 147 (356)
T PRK11650 79 AMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKP-----------RELSGGQRQRVAMGR 147 (356)
T ss_pred EEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCCh-----------hhCCHHHHHHHHHHH
Confidence 99999999996 599999998632 1222 34567777777766655544 479999999999999
Q ss_pred HHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHHHhh
Q 000406 1466 AILKGSRVLLLDEASSALDLESEKHVQDALRKVSK--RATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLAS 1540 (1560)
Q Consensus 1466 ALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~--~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eLl~~ 1540 (1560)
||+++|+|||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|++++.|++++++++
T Consensus 148 AL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~ 225 (356)
T PRK11650 148 AIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEK 225 (356)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhC
Confidence 99999999999999999999999999999998754 6899999999998865 999999999999999999999874
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=375.89 Aligned_cols=213 Identities=31% Similarity=0.514 Sum_probs=180.1
Q ss_pred cEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCe---ecCCccHHHHh
Q 000406 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGH---DLKSLQVKWLR 748 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~---~i~~~~~~~lr 748 (1560)
.|+++|+++.|+. ..+++||||+|+.||.+|+.|||||||||||++|+|+..|+.|.|.++|+ |.++...+ .
T Consensus 2 ~i~i~~~~~~~~~---~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~--~ 76 (345)
T COG1118 2 SIRINNVKKRFGA---FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVR--D 76 (345)
T ss_pred ceeehhhhhhccc---ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchh--h
Confidence 4788999999974 45899999999999999999999999999999999999999999999999 55553332 3
Q ss_pred ccEEEEecCCcCccc-cHHHHHhcCCCCC----CH----HHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHH
Q 000406 749 TQIGMVGQEPILFAT-SILENVLMGKENA----TM----KEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQR 819 (1560)
Q Consensus 749 ~~i~~v~Q~~~lf~~-Tv~eNi~~g~~~~----~~----~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQR 819 (1560)
++||+|+|+..||.. ||.+||.||..-. +. .++.+.++.++ ++..-...+.+||||||||
T Consensus 77 R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvq-----------L~~la~ryP~QLSGGQrQR 145 (345)
T COG1118 77 RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQ-----------LEGLADRYPAQLSGGQRQR 145 (345)
T ss_pred cceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhc-----------ccchhhcCchhcChHHHHH
Confidence 579999999999975 9999999997321 11 22222233332 2333356778999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhH
Q 000406 820 IALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKIS--VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQL 896 (1560)
Q Consensus 820 ialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l 896 (1560)
|||||||..+|++||||||+++||++-++.+.+.|+++. -|.|+++||||.+++.. ||||+||++|+|...|+++|+
T Consensus 146 VALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev 225 (345)
T COG1118 146 VALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEV 225 (345)
T ss_pred HHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHH
Confidence 999999999999999999999999999999999998873 38999999999999865 999999999999999999999
Q ss_pred hhhc
Q 000406 897 LERG 900 (1560)
Q Consensus 897 ~~~~ 900 (1560)
....
T Consensus 226 ~~~P 229 (345)
T COG1118 226 YDHP 229 (345)
T ss_pred hcCC
Confidence 7643
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=379.31 Aligned_cols=224 Identities=34% Similarity=0.552 Sum_probs=189.8
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhhce
Q 000406 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQT 1392 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~~I 1392 (1560)
.++++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+...+|+.+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 3 EIEFKEVSYSSFG---KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 4899999999963 3599999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEEcCCCCCCCccHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHccC
Q 000406 1393 ALVGQEPALFAGTIRDNIALGNPK--ASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKG 1470 (1560)
Q Consensus 1393 ~~VpQdp~LF~gTIreNL~~g~~~--~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLARALLr~ 1470 (1560)
+|+||++.+|+.|++||+.++... ...+++.+.++..++.+ .........||||||||++|||||+++
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~qrl~la~al~~~ 149 (241)
T PRK14250 80 GMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNK----------EYATRDVKNLSGGEAQRVSIARTLANN 149 (241)
T ss_pred EEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCH----------HHhhCCcccCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999875321 11234444444444421 122345568999999999999999999
Q ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHHHhhccChHHH
Q 000406 1471 SRVLLLDEASSALDLESEKHVQDALRKVSK--RATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLASHLNGVYA 1547 (1560)
Q Consensus 1471 p~ILILDEaTSaLD~~Te~~I~~~L~~~~~--~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eLl~~~~~g~y~ 1547 (1560)
|+||||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|++++++.. ....|.
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~-~~~~~~ 228 (241)
T PRK14250 150 PEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTN-PQNEVT 228 (241)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcC-CCcHHH
Confidence 999999999999999999999999998643 7899999999999876 999999999999999999999863 333454
Q ss_pred HHH
Q 000406 1548 SLV 1550 (1560)
Q Consensus 1548 ~l~ 1550 (1560)
+.+
T Consensus 229 ~~~ 231 (241)
T PRK14250 229 KLF 231 (241)
T ss_pred HHH
Confidence 443
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-41 Score=367.61 Aligned_cols=197 Identities=35% Similarity=0.506 Sum_probs=174.9
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhhce
Q 000406 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQT 1392 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~~I 1392 (1560)
.+++++|++.|.. ..||+||||+|++||.|+|+||||||||||+++|+|+..|++|+|.++|.++... ...+
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~ 74 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDI 74 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCE
Confidence 4899999999964 4699999999999999999999999999999999999999999999999988543 3579
Q ss_pred EEEcCCCCCCC-ccHHHHHhcCCCCC------CHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 000406 1393 ALVGQEPALFA-GTIRDNIALGNPKA------SWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIAR 1465 (1560)
Q Consensus 1393 ~~VpQdp~LF~-gTIreNL~~g~~~~------sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLAR 1465 (1560)
+||+|++.||+ -||++|+.++.... ..+.+.+.++.++|.+|-...|. +||||||||+||||
T Consensus 75 ~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~-----------qLSGGMrQRVaiAR 143 (248)
T COG1116 75 GYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPH-----------QLSGGMRQRVAIAR 143 (248)
T ss_pred EEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCcc-----------ccChHHHHHHHHHH
Confidence 99999999998 59999999874321 23467888888988888777774 79999999999999
Q ss_pred HHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc--CCceEEEEecChHHHhh-cCEEEEEeC--CEE
Q 000406 1466 AILKGSRVLLLDEASSALDLESEKHVQDALRKVS--KRATTIVVAHRLSTIRE-ANMIAVVRD--GAV 1528 (1560)
Q Consensus 1466 ALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~--~~~TvI~IAHRlsti~~-aDrIlVLd~--G~I 1528 (1560)
||+.+|+||+||||.++||+.|...+|+-|.++- .++||++|||+++.... +|||+||.+ |+|
T Consensus 144 AL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i 211 (248)
T COG1116 144 ALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRI 211 (248)
T ss_pred HHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCcce
Confidence 9999999999999999999999999999998864 35899999999998654 999999999 545
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=383.61 Aligned_cols=219 Identities=29% Similarity=0.496 Sum_probs=187.0
Q ss_pred ccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccC-----CCccEEEECCEecCC--CC
Q 000406 1312 LGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYD-----PNQGKVMIEGVDLRE--IN 1384 (1560)
Q Consensus 1312 ~~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~-----p~~G~I~IdGvdi~~--i~ 1384 (1560)
..|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||.++.. .+
T Consensus 5 ~~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (253)
T PRK14242 5 PKMEARGLSFFYGD---FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81 (253)
T ss_pred cEEEEeeeEEEECC---eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccC
Confidence 35999999999963 359999999999999999999999999999999999975 589999999999875 34
Q ss_pred HHHHhhceEEEcCCCCCCCccHHHHHhcCCC--CC-----CHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHH
Q 000406 1385 VKWLRKQTALVGQEPALFAGTIRDNIALGNP--KA-----SWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQ 1457 (1560)
Q Consensus 1385 l~~LR~~I~~VpQdp~LF~gTIreNL~~g~~--~~-----sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQ 1457 (1560)
...+|+.++|+||++.+|..|++||+.++.. .. ..+++.++++.+++.+.+. ........+|||||
T Consensus 82 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq 154 (253)
T PRK14242 82 VVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVK-------DRLHESALGLSGGQ 154 (253)
T ss_pred HHHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCHHH
Confidence 5678899999999999999999999986421 11 1234555666665543332 22345566899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHH
Q 000406 1458 KQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHET 1536 (1560)
Q Consensus 1458 rQRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~e 1536 (1560)
|||++|||||+.+|+||||||||++||+.+.+.+.+.|++..+++|||+|||+++.+.. ||+|++|++|+|++.|++++
T Consensus 155 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 234 (253)
T PRK14242 155 QQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQ 234 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999988767899999999999865 99999999999999999999
Q ss_pred HHhh
Q 000406 1537 LLAS 1540 (1560)
Q Consensus 1537 Ll~~ 1540 (1560)
+.+.
T Consensus 235 ~~~~ 238 (253)
T PRK14242 235 IFTR 238 (253)
T ss_pred HHcC
Confidence 9863
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=379.81 Aligned_cols=217 Identities=33% Similarity=0.537 Sum_probs=183.5
Q ss_pred EEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccH---HHHhc
Q 000406 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQV---KWLRT 749 (1560)
Q Consensus 673 i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~---~~lr~ 749 (1560)
|+++|++++|+. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFGG---RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred CeEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 478999999963 459999999999999999999999999999999999999999999999999877654 46778
Q ss_pred cEEEEecCCcCccc-cHHHHHhcCCC---CCCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHH
Q 000406 750 QIGMVGQEPILFAT-SILENVLMGKE---NATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARA 825 (1560)
Q Consensus 750 ~i~~v~Q~~~lf~~-Tv~eNi~~g~~---~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARA 825 (1560)
.|+||+|++.+|+. ||+||+.++.. ....++..+. +.+.++.+ |+.........+||||||||++||||
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~ia~a 150 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREI-----VLEKLEAV--GLRGAEDLYPAELSGGMKKRVALARA 150 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHH-----HHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHH
Confidence 89999999999986 99999987532 1122222111 12234443 45445566778999999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhHhhh
Q 000406 826 MIKDPRILLLDEPTSALDSESESIVQQAIDKIS--VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLER 899 (1560)
Q Consensus 826 l~~~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l~~~ 899 (1560)
|+.+|+||||||||++||+.++..+.+.|+++. .|+|||+|||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 151 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 227 (235)
T cd03261 151 LALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRAS 227 (235)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcCC
Confidence 999999999999999999999999999999874 38999999999999876 999999999999999999887653
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=393.69 Aligned_cols=221 Identities=28% Similarity=0.456 Sum_probs=187.7
Q ss_pred cEEEEEEEEEcCCCC--CccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCc-------
Q 000406 672 KIEFKGVTFAYPSRP--ETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSL------- 742 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~~--~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~------- 742 (1560)
.|+++|++|+|+... ..++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.+.
T Consensus 21 ~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~ 100 (320)
T PRK13631 21 ILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELI 100 (320)
T ss_pred eEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccccc
Confidence 599999999997421 23599999999999999999999999999999999999999999999999998653
Q ss_pred ---------cHHHHhccEEEEecCC--cCccccHHHHHhcCCCC--CCHHHHHHHHHHhhhHHHHHhCCCCCC-cccCCC
Q 000406 743 ---------QVKWLRTQIGMVGQEP--ILFATSILENVLMGKEN--ATMKEAVAACKAASAHSFISELPLGYD-TQVGDR 808 (1560)
Q Consensus 743 ---------~~~~lr~~i~~v~Q~~--~lf~~Tv~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~gl~-t~~~~~ 808 (1560)
....+|++|+||+|+| .+|+.||+|||.++... .+.++..+ .+.++++.+ |++ ...++.
T Consensus 101 ~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~ 173 (320)
T PRK13631 101 TNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKK-----LAKFYLNKM--GLDDSYLERS 173 (320)
T ss_pred ccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHH-----HHHHHHHHc--CCChhHhcCC
Confidence 3456788999999998 68889999999887421 22222211 122445554 564 456788
Q ss_pred CCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEecCccccc-cCCEEEEEeCCe
Q 000406 809 GTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKI-SVGRTTIVIAHRLATVK-NANTIVVLDQGS 886 (1560)
Q Consensus 809 g~~LSgGQrQRialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~l~~i~-~~D~i~vl~~G~ 886 (1560)
+.+||||||||++|||||+++|+||||||||++||+.+++.+.+.|+++ .+|+|+|+|||+++.+. .||+|++|++|+
T Consensus 174 ~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~ 253 (320)
T PRK13631 174 PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGK 253 (320)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCE
Confidence 8999999999999999999999999999999999999999999999877 35899999999999875 599999999999
Q ss_pred EEEecChhhHhhh
Q 000406 887 VVEIGNHRQLLER 899 (1560)
Q Consensus 887 iv~~G~~~~l~~~ 899 (1560)
+++.|+++++...
T Consensus 254 i~~~g~~~~~~~~ 266 (320)
T PRK13631 254 ILKTGTPYEIFTD 266 (320)
T ss_pred EEEeCCHHHHhcC
Confidence 9999999988653
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=398.35 Aligned_cols=217 Identities=30% Similarity=0.443 Sum_probs=186.0
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhhce
Q 000406 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQT 1392 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~~I 1392 (1560)
.|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.++. ++.+
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~i 78 (353)
T TIGR03265 4 YLSIDNIRKRFGA---FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDY 78 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 4899999999963 3589999999999999999999999999999999999999999999999999887764 6789
Q ss_pred EEEcCCCCCCC-ccHHHHHhcCCC--CCCH----HHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 000406 1393 ALVGQEPALFA-GTIRDNIALGNP--KASW----AEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIAR 1465 (1560)
Q Consensus 1393 ~~VpQdp~LF~-gTIreNL~~g~~--~~sd----~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLAR 1465 (1560)
+||+|++.||+ .|++|||.++.. ..+. +++.++++..++. ........+||||||||+||||
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~-----------~~~~~~~~~LSgGq~QRvaLAR 147 (353)
T TIGR03265 79 GIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLP-----------GSERKYPGQLSGGQQQRVALAR 147 (353)
T ss_pred EEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC-----------chhhCChhhCCHHHHHHHHHHH
Confidence 99999999996 699999998632 1222 2344444444443 3344455689999999999999
Q ss_pred HHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHHHhhcc
Q 000406 1466 AILKGSRVLLLDEASSALDLESEKHVQDALRKVSK--RATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLASHL 1542 (1560)
Q Consensus 1466 ALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~--~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eLl~~~~ 1542 (1560)
||+++|++||||||||+||+.+.+.+.+.|++..+ +.|+|+|||+++.+.. ||+|++|++|+|++.|++++++++ .
T Consensus 148 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~-p 226 (353)
T TIGR03265 148 ALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRH-P 226 (353)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC-C
Confidence 99999999999999999999999999999998754 6899999999999865 999999999999999999999974 3
Q ss_pred ChHH
Q 000406 1543 NGVY 1546 (1560)
Q Consensus 1543 ~g~y 1546 (1560)
...|
T Consensus 227 ~~~~ 230 (353)
T TIGR03265 227 ATPF 230 (353)
T ss_pred CCHH
Confidence 4344
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=380.41 Aligned_cols=210 Identities=33% Similarity=0.494 Sum_probs=179.4
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhhceE
Q 000406 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTA 1393 (1560)
Q Consensus 1314 I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~~I~ 1393 (1560)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+. .++.++
T Consensus 3 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 77 (239)
T cd03296 3 IEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVG 77 (239)
T ss_pred EEEEeEEEEECC---EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceE
Confidence 789999999963 359999999999999999999999999999999999999999999999999876653 367899
Q ss_pred EEcCCCCCCC-ccHHHHHhcCCCC--C----CH----HHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHH
Q 000406 1394 LVGQEPALFA-GTIRDNIALGNPK--A----SW----AEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIA 1462 (1560)
Q Consensus 1394 ~VpQdp~LF~-gTIreNL~~g~~~--~----sd----~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLa 1462 (1560)
||||+|.+|. .|++||+.++... . .. +++.++++..++.+ .......+||||||||++
T Consensus 78 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrl~ 146 (239)
T cd03296 78 FVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDW-----------LADRYPAQLSGGQRQRVA 146 (239)
T ss_pred EEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChh-----------hhhcChhhCCHHHHHHHH
Confidence 9999999986 5999999875321 1 11 22334444444433 333344579999999999
Q ss_pred HHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHHHh
Q 000406 1463 IARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSK--RATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLA 1539 (1560)
Q Consensus 1463 LARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~--~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eLl~ 1539 (1560)
|||||+.+|+||||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 147 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (239)
T cd03296 147 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYD 226 (239)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhc
Confidence 99999999999999999999999999999999998753 6899999999998765 99999999999999999999986
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=377.12 Aligned_cols=219 Identities=50% Similarity=0.847 Sum_probs=195.0
Q ss_pred CcccEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHHHh
Q 000406 669 VSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLR 748 (1560)
Q Consensus 669 ~~g~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr 748 (1560)
..+.|+++|++++|++....++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+....+
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 35679999999999753234699999999999999999999999999999999999999999999999998777767778
Q ss_pred ccEEEEecCCcCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHHhcc
Q 000406 749 TQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIK 828 (1560)
Q Consensus 749 ~~i~~v~Q~~~lf~~Tv~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARAl~~ 828 (1560)
+.++|++|++.+|+.|++||+.++.......++.+.+....+.++++.+|.|+++.++..+.+||||||||++|||||++
T Consensus 88 ~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~ 167 (226)
T cd03248 88 SKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIR 167 (226)
T ss_pred hhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc
Confidence 88999999999999999999998754434444444445556778899998899888899999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCccccccCCEEEEEeCCeE
Q 000406 829 DPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSV 887 (1560)
Q Consensus 829 ~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~D~i~vl~~G~i 887 (1560)
+|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+..||+|++|++|++
T Consensus 168 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 168 NPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999988667999999999999977999999999974
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=397.46 Aligned_cols=211 Identities=29% Similarity=0.435 Sum_probs=180.7
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHH----hhceEEEcCCCCCCC-
Q 000406 1329 VTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWL----RKQTALVGQEPALFA- 1403 (1560)
Q Consensus 1329 ~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~L----R~~I~~VpQdp~LF~- 1403 (1560)
+.+|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|+|||.++...+...+ |+.|+||||++.||+
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 459999999999999999999999999999999999999999999999999999998887 789999999999997
Q ss_pred ccHHHHHhcCCC--CCC----HHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHccCCCEEEEe
Q 000406 1404 GTIRDNIALGNP--KAS----WAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLD 1477 (1560)
Q Consensus 1404 gTIreNL~~g~~--~~s----d~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLARALLr~p~ILILD 1477 (1560)
.||+|||.++.. ..+ .+++.++++.+++..+.. ....+||||||||++|||||+++|+|||||
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~-----------~~p~~LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEH-----------RYPDELSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhh-----------CChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 599999987532 112 244556666666654443 444579999999999999999999999999
Q ss_pred CCCcCCCHHHHHHHHHHHHHhc--CCceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHHHhhccChHHHHHH
Q 000406 1478 EASSALDLESEKHVQDALRKVS--KRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLASHLNGVYASLV 1550 (1560)
Q Consensus 1478 EaTSaLD~~Te~~I~~~L~~~~--~~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eLl~~~~~g~y~~l~ 1550 (1560)
||||+||+.+.+.+++.|+++. .++|+|+|||+++.+.. ||||++|++|+|++.|++++++++..+.....++
T Consensus 155 EP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p~~~~~~~~~ 230 (363)
T TIGR01186 155 EAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYVEEFI 230 (363)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCcccHHHHHHh
Confidence 9999999999999999999874 37899999999998755 9999999999999999999999743333333443
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=386.62 Aligned_cols=212 Identities=32% Similarity=0.527 Sum_probs=185.9
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhhce
Q 000406 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQT 1392 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~~I 1392 (1560)
-|+++||+++|+.. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+...+++++
T Consensus 4 ~l~~~~l~~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKDG--TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCCC--CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 48999999999632 3599999999999999999999999999999999999999999999999999988888889999
Q ss_pred EEEcCCC--CCCCccHHHHHhcCCC--CCC----HHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 000406 1393 ALVGQEP--ALFAGTIRDNIALGNP--KAS----WAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIA 1464 (1560)
Q Consensus 1393 ~~VpQdp--~LF~gTIreNL~~g~~--~~s----d~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLA 1464 (1560)
+||||+| .+|..|+++|+.++.. ..+ .+++.++++.+++.++....| ..||||||||++||
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgG~~qrv~la 150 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPP-----------YHLSYGQKKRVAIA 150 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCh-----------hhCCHHHHHHHHHH
Confidence 9999998 6888999999987521 122 234566666667665544433 37999999999999
Q ss_pred HHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHH
Q 000406 1465 RAILKGSRVLLLDEASSALDLESEKHVQDALRKVS-KRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETL 1537 (1560)
Q Consensus 1465 RALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~-~~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eL 1537 (1560)
|||+.+|++|||||||++||+.+...+.+.|+++. +++|+|+|||+++.+.. ||||++|++|++++.|+++++
T Consensus 151 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 151 GVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 99999999999999999999999999999999874 47899999999999854 999999999999999998754
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-40 Score=385.40 Aligned_cols=217 Identities=31% Similarity=0.520 Sum_probs=184.0
Q ss_pred EEEEEEEEEcCCCC--CccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCC--HHHHh
Q 000406 1314 IELKMVTFTYPSRP--EVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREIN--VKWLR 1389 (1560)
Q Consensus 1314 I~~~nVsf~Y~~~~--~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~--l~~LR 1389 (1560)
|+++||+++|+... ..++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+ ...+|
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 78999999997421 136999999999999999999999999999999999999999999999999998754 45788
Q ss_pred hceEEEcCCC--CCCCccHHHHHhcCCC--CCCHHH----HHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 000406 1390 KQTALVGQEP--ALFAGTIRDNIALGNP--KASWAE----IEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRI 1461 (1560)
Q Consensus 1390 ~~I~~VpQdp--~LF~gTIreNL~~g~~--~~sd~e----I~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRL 1461 (1560)
++|+||||+| .+|+.|++|||.++.. ..+.++ +.++++.+++. +.+........||||||||+
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~---------~~~~~~~~~~~LSgGq~qrv 153 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLD---------YEDYKDKSPFELSGGQKRRV 153 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCC---------chhhccCCcccCCHHHHHHH
Confidence 9999999998 5789999999987521 233333 33444444432 01234455568999999999
Q ss_pred HHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CceEEEEecChHHHh-hcCEEEEEeCCEEEEecCHHHHH
Q 000406 1462 AIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSK--RATTIVVAHRLSTIR-EANMIAVVRDGAVVEYGSHETLL 1538 (1560)
Q Consensus 1462 aLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~--~~TvI~IAHRlsti~-~aDrIlVLd~G~IvE~Gt~~eLl 1538 (1560)
+|||||+.+|+||||||||++||+.+...+.+.|+++.+ ++|||+|||+++.+. .||||++|++|++++.|++++++
T Consensus 154 ~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13637 154 AIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVF 233 (287)
T ss_pred HHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999999998753 689999999999985 49999999999999999999987
Q ss_pred h
Q 000406 1539 A 1539 (1560)
Q Consensus 1539 ~ 1539 (1560)
+
T Consensus 234 ~ 234 (287)
T PRK13637 234 K 234 (287)
T ss_pred h
Confidence 5
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=381.94 Aligned_cols=218 Identities=28% Similarity=0.437 Sum_probs=186.4
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCC-----CccEEEECCEecCC--CCH
Q 000406 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDP-----NQGKVMIEGVDLRE--INV 1385 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p-----~~G~I~IdGvdi~~--i~l 1385 (1560)
.|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||.++.. .+.
T Consensus 7 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (254)
T PRK14273 7 IIETENLNLFYTD---FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDI 83 (254)
T ss_pred eEEEeeeEEEeCC---ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccH
Confidence 5999999999963 3599999999999999999999999999999999999997 48999999999863 345
Q ss_pred HHHhhceEEEcCCCCCCCccHHHHHhcCCC--C-CC----HHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHH
Q 000406 1386 KWLRKQTALVGQEPALFAGTIRDNIALGNP--K-AS----WAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQK 1458 (1560)
Q Consensus 1386 ~~LR~~I~~VpQdp~LF~gTIreNL~~g~~--~-~s----d~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQr 1458 (1560)
..+|+.++||||++.+|..|++|||.++.. . .. ++.+.++++.+++.+.+ ++.+++ ...+||||||
T Consensus 84 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~~~----~~~~LSgG~~ 156 (254)
T PRK14273 84 LELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV---KDKLNT----NALSLSGGQQ 156 (254)
T ss_pred HHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhh---HHHHhC----CcccCCHHHH
Confidence 677899999999999999999999987521 1 11 23455666666553322 223444 4557999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHH
Q 000406 1459 QRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETL 1537 (1560)
Q Consensus 1459 QRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eL 1537 (1560)
||++|||||+++|+||||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||||++|++|+|++.|+++++
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 236 (254)
T PRK14273 157 QRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDEL 236 (254)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998777899999999999865 999999999999999999999
Q ss_pred Hhh
Q 000406 1538 LAS 1540 (1560)
Q Consensus 1538 l~~ 1540 (1560)
.++
T Consensus 237 ~~~ 239 (254)
T PRK14273 237 FFN 239 (254)
T ss_pred HhC
Confidence 863
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=379.32 Aligned_cols=221 Identities=25% Similarity=0.461 Sum_probs=184.2
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHH-hhce
Q 000406 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWL-RKQT 1392 (1560)
Q Consensus 1314 I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~L-R~~I 1392 (1560)
++++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+...+ |+.+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (236)
T cd03219 1 LEVRGLTKRFGG---LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77 (236)
T ss_pred CeeeeeEEEECC---EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCE
Confidence 478999999963 359999999999999999999999999999999999999999999999999988877654 5679
Q ss_pred EEEcCCCCCCCc-cHHHHHhcCCCCCCHHHH-------HHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 000406 1393 ALVGQEPALFAG-TIRDNIALGNPKASWAEI-------EEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIA 1464 (1560)
Q Consensus 1393 ~~VpQdp~LF~g-TIreNL~~g~~~~sd~eI-------~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLA 1464 (1560)
+|+||++.+|.+ |++|||.++........+ ........+.+.+..+ |++.........||||||||++||
T Consensus 78 ~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la 155 (236)
T cd03219 78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERV--GLADLADRPAGELSYGQQRRLEIA 155 (236)
T ss_pred EEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHc--CccchhhCChhhCCHHHHHHHHHH
Confidence 999999999986 999999875321100000 0000111233444444 455555566678999999999999
Q ss_pred HHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHHHh
Q 000406 1465 RAILKGSRVLLLDEASSALDLESEKHVQDALRKVS-KRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLA 1539 (1560)
Q Consensus 1465 RALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~-~~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eLl~ 1539 (1560)
|||+.+|++|||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.|++++++.
T Consensus 156 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 232 (236)
T cd03219 156 RALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRN 232 (236)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhcc
Confidence 99999999999999999999999999999999865 67899999999999876 99999999999999999999875
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=379.92 Aligned_cols=213 Identities=32% Similarity=0.504 Sum_probs=181.6
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCC---HHHHhh
Q 000406 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREIN---VKWLRK 1390 (1560)
Q Consensus 1314 I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~---l~~LR~ 1390 (1560)
++++||+++|+.+ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+ ...+|+
T Consensus 1 l~~~~l~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPNG--KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCCc--cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence 4789999999641 45999999999999999999999999999999999999999999999999998876 456788
Q ss_pred ceEEEcCCCCCCC-ccHHHHHhcCCCC--------------CCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCCh
Q 000406 1391 QTALVGQEPALFA-GTIRDNIALGNPK--------------ASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSG 1455 (1560)
Q Consensus 1391 ~I~~VpQdp~LF~-gTIreNL~~g~~~--------------~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSG 1455 (1560)
.++|+||++.+|. .|+++|+.++... ...+++.++++..+ ++......+.+|||
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS~ 147 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVG-----------LLDKAYQRADQLSG 147 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcC-----------ChhhhCCCcccCCH
Confidence 9999999998887 6999999864211 01123333444433 33334445668999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc--CCceEEEEecChHHHh-hcCEEEEEeCCEEEEec
Q 000406 1456 GQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVS--KRATTIVVAHRLSTIR-EANMIAVVRDGAVVEYG 1532 (1560)
Q Consensus 1456 GQrQRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~--~~~TvI~IAHRlsti~-~aDrIlVLd~G~IvE~G 1532 (1560)
|||||++|||||+++|+||||||||++||+.+.+.+.+.|++.. .++|+|+|||+++.+. .||+|++|++|++++.|
T Consensus 148 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~ 227 (241)
T cd03256 148 GQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDG 227 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeec
Confidence 99999999999999999999999999999999999999999875 3789999999999998 49999999999999999
Q ss_pred CHHHHHh
Q 000406 1533 SHETLLA 1539 (1560)
Q Consensus 1533 t~~eLl~ 1539 (1560)
+++++.+
T Consensus 228 ~~~~~~~ 234 (241)
T cd03256 228 PPAELTD 234 (241)
T ss_pred CHHHhhH
Confidence 9998743
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-41 Score=390.88 Aligned_cols=219 Identities=32% Similarity=0.536 Sum_probs=195.6
Q ss_pred ccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhhc
Q 000406 1312 LGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQ 1391 (1560)
Q Consensus 1312 ~~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~~ 1391 (1560)
..|+++||+.+|. +..+|+||||+|++||.++++||||||||||+++|+||..|++|+|.+||.|+..++++ ++.
T Consensus 4 ~~l~i~~v~k~yg---~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~ 78 (352)
T COG3842 4 PALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRP 78 (352)
T ss_pred ceEEEEeeeeecC---CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hcc
Confidence 3599999999996 35699999999999999999999999999999999999999999999999999999987 579
Q ss_pred eEEEcCCCCCCC-ccHHHHHhcCCC---CCCH----HHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 000406 1392 TALVGQEPALFA-GTIRDNIALGNP---KASW----AEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAI 1463 (1560)
Q Consensus 1392 I~~VpQdp~LF~-gTIreNL~~g~~---~~sd----~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaL 1463 (1560)
|++|+|+..||+ .||+|||.||.. ...+ +.+.++++.+++.++-...| .+|||||+||+||
T Consensus 79 ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p-----------~qLSGGQqQRVAL 147 (352)
T COG3842 79 IGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKP-----------HQLSGGQQQRVAL 147 (352)
T ss_pred cceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhCh-----------hhhChHHHHHHHH
Confidence 999999999997 699999999853 1222 36788999999988776665 4799999999999
Q ss_pred HHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc--CCceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHHHhh
Q 000406 1464 ARAILKGSRVLLLDEASSALDLESEKHVQDALRKVS--KRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLAS 1540 (1560)
Q Consensus 1464 ARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~--~~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eLl~~ 1540 (1560)
||||..+|++||||||-|+||..-...++.-|+++. .|.|.|+|||+-+.... +|||+||++|+|...|+|+|+..+
T Consensus 148 ARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~ 227 (352)
T COG3842 148 ARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYER 227 (352)
T ss_pred HHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhC
Confidence 999999999999999999999999999999998764 36899999999998754 999999999999999999999984
Q ss_pred ccChHHH
Q 000406 1541 HLNGVYA 1547 (1560)
Q Consensus 1541 ~~~g~y~ 1547 (1560)
....|-
T Consensus 228 -P~~~fV 233 (352)
T COG3842 228 -PATRFV 233 (352)
T ss_pred -cchHHH
Confidence 455553
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-40 Score=380.68 Aligned_cols=220 Identities=31% Similarity=0.533 Sum_probs=188.3
Q ss_pred CccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccC-----CCccEEEECCEecCC--C
Q 000406 1311 PLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYD-----PNQGKVMIEGVDLRE--I 1383 (1560)
Q Consensus 1311 ~~~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~-----p~~G~I~IdGvdi~~--i 1383 (1560)
.+.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||.++.. .
T Consensus 11 ~~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~ 87 (260)
T PRK10744 11 PSKIQVRNLNFYYGK---FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQ 87 (260)
T ss_pred CceEEEEEEEEEeCC---eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccccc
Confidence 446999999999963 359999999999999999999999999999999999986 589999999999863 4
Q ss_pred CHHHHhhceEEEcCCCCCCCccHHHHHhcCCC---CCCH----HHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChH
Q 000406 1384 NVKWLRKQTALVGQEPALFAGTIRDNIALGNP---KASW----AEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGG 1456 (1560)
Q Consensus 1384 ~l~~LR~~I~~VpQdp~LF~gTIreNL~~g~~---~~sd----~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGG 1456 (1560)
+...+|++++|+||++.+|+.|+++|+.++.. ..+. ++++++++.+++.+.+ ...+.....+||||
T Consensus 88 ~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G 160 (260)
T PRK10744 88 DIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEV-------KDKLHQSGYSLSGG 160 (260)
T ss_pred chHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhh-------HHHHhcCCCCCCHH
Confidence 56678999999999999999999999986521 1222 3455566665553222 23344556789999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHH
Q 000406 1457 QKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHE 1535 (1560)
Q Consensus 1457 QrQRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~ 1535 (1560)
||||++|||||+++|+||||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++
T Consensus 161 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 240 (260)
T PRK10744 161 QQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTD 240 (260)
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999988777899999999999865 9999999999999999999
Q ss_pred HHHhh
Q 000406 1536 TLLAS 1540 (1560)
Q Consensus 1536 eLl~~ 1540 (1560)
++++.
T Consensus 241 ~~~~~ 245 (260)
T PRK10744 241 TIFTK 245 (260)
T ss_pred HHHhC
Confidence 99863
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=375.22 Aligned_cols=211 Identities=27% Similarity=0.411 Sum_probs=179.5
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhhceE
Q 000406 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTA 1393 (1560)
Q Consensus 1314 I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~~I~ 1393 (1560)
|+++||++.|+.. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.... ..+|++++
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 78 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR-KAARQSLG 78 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccch-HHHhhhEE
Confidence 5799999999642 146999999999999999999999999999999999999999999999999987643 56788999
Q ss_pred EEcCCCCCC-CccHHHHHhcCCC--CCCH----HHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 000406 1394 LVGQEPALF-AGTIRDNIALGNP--KASW----AEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARA 1466 (1560)
Q Consensus 1394 ~VpQdp~LF-~gTIreNL~~g~~--~~sd----~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLARA 1466 (1560)
|+||++.+| ..|+++|+.++.. ..+. +++.++++..++.+. +++ ...+||||||||++||||
T Consensus 79 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~----~~~~LS~G~~qrv~la~a 147 (220)
T cd03263 79 YCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDK-------ANK----RARTLSGGMKRKLSLAIA 147 (220)
T ss_pred EecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH-------HhC----hhhhCCHHHHHHHHHHHH
Confidence 999999998 5799999986421 1122 234444544444332 233 334799999999999999
Q ss_pred HccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHH
Q 000406 1467 ILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETL 1537 (1560)
Q Consensus 1467 LLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eL 1537 (1560)
|+++|++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 148 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 148 LIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred HhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 99999999999999999999999999999988777999999999999875 999999999999999998875
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=385.96 Aligned_cols=215 Identities=31% Similarity=0.530 Sum_probs=189.0
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhhce
Q 000406 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQT 1392 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~~I 1392 (1560)
-++++||+++|+.. .+++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+...+++.|
T Consensus 5 ~l~~~~l~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 5 IIRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred eEEEEEEEEEeCCC-CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 48999999999642 34599999999999999999999999999999999999999999999999999988888888999
Q ss_pred EEEcCCC--CCCCccHHHHHhcCCC--CCCH----HHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 000406 1393 ALVGQEP--ALFAGTIRDNIALGNP--KASW----AEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIA 1464 (1560)
Q Consensus 1393 ~~VpQdp--~LF~gTIreNL~~g~~--~~sd----~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLA 1464 (1560)
+|+||++ .+++.|++|||.++.. ..+. +++.++++..++.+++...| ..||||||||++||
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qrv~la 152 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREP-----------HRLSGGQKQRVAIA 152 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHHH
Confidence 9999998 5677899999987521 1222 34566666666666555443 47999999999999
Q ss_pred HHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CceEEEEecChHHHhhcCEEEEEeCCEEEEecCHHHHHh
Q 000406 1465 RAILKGSRVLLLDEASSALDLESEKHVQDALRKVSK--RATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETLLA 1539 (1560)
Q Consensus 1465 RALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~--~~TvI~IAHRlsti~~aDrIlVLd~G~IvE~Gt~~eLl~ 1539 (1560)
|||+.+|+||||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+..||+|++|++|++++.|+++++++
T Consensus 153 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (279)
T PRK13635 153 GVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFK 229 (279)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhc
Confidence 999999999999999999999999999999998764 689999999999998899999999999999999999875
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-40 Score=378.93 Aligned_cols=216 Identities=33% Similarity=0.529 Sum_probs=184.9
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCC-----ccEEEECCEecCCC--CHH
Q 000406 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPN-----QGKVMIEGVDLREI--NVK 1386 (1560)
Q Consensus 1314 I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~-----~G~I~IdGvdi~~i--~l~ 1386 (1560)
|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|+|+++|+ +|+|.+||.++... +..
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~ 78 (247)
T TIGR00972 2 IEIENLNLFYGE---KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVV 78 (247)
T ss_pred EEEEEEEEEECC---eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchH
Confidence 789999999963 35999999999999999999999999999999999999998 99999999998763 456
Q ss_pred HHhhceEEEcCCCCCCCccHHHHHhcCCC--C-CC----HHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHH
Q 000406 1387 WLRKQTALVGQEPALFAGTIRDNIALGNP--K-AS----WAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQ 1459 (1560)
Q Consensus 1387 ~LR~~I~~VpQdp~LF~gTIreNL~~g~~--~-~s----d~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQ 1459 (1560)
.+|+.++||||++.+|..|++||+.++.. . .+ .+++.++++..++.+++. ........+|||||||
T Consensus 79 ~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~q 151 (247)
T TIGR00972 79 ELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVK-------DRLHDSALGLSGGQQQ 151 (247)
T ss_pred HHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh-------hHhhCCcccCCHHHHH
Confidence 77889999999999999999999986421 1 12 133455555555542221 2233445689999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHHH
Q 000406 1460 RIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLL 1538 (1560)
Q Consensus 1460 RLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eLl 1538 (1560)
|++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|++++++
T Consensus 152 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 152 RLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999988767899999999998865 9999999999999999999998
Q ss_pred h
Q 000406 1539 A 1539 (1560)
Q Consensus 1539 ~ 1539 (1560)
.
T Consensus 232 ~ 232 (247)
T TIGR00972 232 T 232 (247)
T ss_pred h
Confidence 6
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=375.17 Aligned_cols=203 Identities=30% Similarity=0.489 Sum_probs=173.9
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHH---HHhh
Q 000406 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVK---WLRK 1390 (1560)
Q Consensus 1314 I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~---~LR~ 1390 (1560)
|+++||+++|++. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+.. .+|+
T Consensus 2 l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 7899999999642 23599999999999999999999999999999999999999999999999999876543 4788
Q ss_pred ceEEEcCCCCCCC-ccHHHHHhcCCC------CCCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 000406 1391 QTALVGQEPALFA-GTIRDNIALGNP------KASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAI 1463 (1560)
Q Consensus 1391 ~I~~VpQdp~LF~-gTIreNL~~g~~------~~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaL 1463 (1560)
.++|+||++.+|. .|++||+.++.. ...++++.++++..++.++.... ..+||||||||++|
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrv~l 149 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHAL-----------PMQLSGGEQQRVAI 149 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCC-----------hhhCCHHHHHHHHH
Confidence 9999999999887 599999986411 11234566666666665544333 34799999999999
Q ss_pred HHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCceEEEEecChHHHhh-cCEEEEEeCCEE
Q 000406 1464 ARAILKGSRVLLLDEASSALDLESEKHVQDALRKVS-KRATTIVVAHRLSTIRE-ANMIAVVRDGAV 1528 (1560)
Q Consensus 1464 ARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~-~~~TvI~IAHRlsti~~-aDrIlVLd~G~I 1528 (1560)
||||+.+|+||||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|+|
T Consensus 150 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 150 ARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999864 47899999999999975 899999999975
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-40 Score=398.47 Aligned_cols=213 Identities=28% Similarity=0.494 Sum_probs=190.0
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhhce
Q 000406 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQT 1392 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~~I 1392 (1560)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+++...++++|
T Consensus 3 ~L~~~nls~~y~~---~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 3 MIDVSDLSVEFGD---TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence 3899999999963 4699999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCC-CCccHHHHHhcCCC----------CCCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 000406 1393 ALVGQEPAL-FAGTIRDNIALGNP----------KASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRI 1461 (1560)
Q Consensus 1393 ~~VpQdp~L-F~gTIreNL~~g~~----------~~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRL 1461 (1560)
+||||++.+ |+.|++||+.++.. ..+.+.+.++++.+++.++..+ ...+||||||||+
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~-----------~~~~LSgGerQRv 148 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADR-----------PVTSLSGGERQRV 148 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHHH
Confidence 999999987 67899999987631 1123456777777777655433 2347999999999
Q ss_pred HHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHHHh
Q 000406 1462 AIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVS-KRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLA 1539 (1560)
Q Consensus 1462 aLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~-~~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eLl~ 1539 (1560)
+|||||+++|+||||||||++||+.+...+++.|+++. +++|+|+++|+++.+.. ||||++|++|++++.|++++++.
T Consensus 149 ~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~ 228 (402)
T PRK09536 149 LLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLT 228 (402)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhC
Confidence 99999999999999999999999999999999999875 47899999999999955 99999999999999999999885
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-40 Score=384.86 Aligned_cols=219 Identities=29% Similarity=0.516 Sum_probs=185.5
Q ss_pred EEEEEEEEEcCCCC--CccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCC----CHHH
Q 000406 1314 IELKMVTFTYPSRP--EVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREI----NVKW 1387 (1560)
Q Consensus 1314 I~~~nVsf~Y~~~~--~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i----~l~~ 1387 (1560)
|+++||+++|+... ..++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+++... +...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 79999999996422 13699999999999999999999999999999999999999999999999999754 3467
Q ss_pred HhhceEEEcCCC--CCCCccHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHHhCCCCccc-cccCCCCCCChHHHHHHH
Q 000406 1388 LRKQTALVGQEP--ALFAGTIRDNIALGNP--KASWAEIEEAAEEAYIHKFISSLPQGYET-QVGESGVQLSGGQKQRIA 1462 (1560)
Q Consensus 1388 LR~~I~~VpQdp--~LF~gTIreNL~~g~~--~~sd~eI~~al~~a~l~~~I~~Lp~Gldt-~Vge~G~~LSGGQrQRLa 1462 (1560)
+|++|+||||+| .+|..|++|||.++.. ..+.++..+. +.+.+..+ |+++ .....+.+||||||||++
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrv~ 155 (286)
T PRK13646 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNY-----AHRLLMDL--GFSRDVMSQSPFQMSGGQMRKIA 155 (286)
T ss_pred HHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHc--CCChhhhhCCcccCCHHHHHHHH
Confidence 899999999998 6888999999987521 2233333222 23334433 5653 344567789999999999
Q ss_pred HHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc--CCceEEEEecChHHHh-hcCEEEEEeCCEEEEecCHHHHHh
Q 000406 1463 IARAILKGSRVLLLDEASSALDLESEKHVQDALRKVS--KRATTIVVAHRLSTIR-EANMIAVVRDGAVVEYGSHETLLA 1539 (1560)
Q Consensus 1463 LARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~--~~~TvI~IAHRlsti~-~aDrIlVLd~G~IvE~Gt~~eLl~ 1539 (1560)
|||||+.+|+||||||||++||+.+...+.+.|+++. .++|||+|||+++.+. .||||++|++|+|++.|+++++++
T Consensus 156 laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 235 (286)
T PRK13646 156 IVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFK 235 (286)
T ss_pred HHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999999874 4789999999999986 499999999999999999999886
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-40 Score=373.06 Aligned_cols=217 Identities=27% Similarity=0.419 Sum_probs=179.6
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHH-hhce
Q 000406 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWL-RKQT 1392 (1560)
Q Consensus 1314 I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~L-R~~I 1392 (1560)
|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+...+ |+.+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (222)
T cd03224 1 LEVENLNAGYGK---SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGI 77 (222)
T ss_pred CEEeeEEeecCC---eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCe
Confidence 579999999963 359999999999999999999999999999999999999999999999999988877654 6789
Q ss_pred EEEcCCCCCCCc-cHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHccCC
Q 000406 1393 ALVGQEPALFAG-TIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGS 1471 (1560)
Q Consensus 1393 ~~VpQdp~LF~g-TIreNL~~g~~~~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLARALLr~p 1471 (1560)
+|+||++.+|.+ |++||+.++.......+..+. +.+.+..++ +++.........||||||||++|||||+++|
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~-----~~~~l~~~~-~l~~~~~~~~~~LS~G~~qrv~laral~~~p 151 (222)
T cd03224 78 GYVPEGRRIFPELTVEENLLLGAYARRRAKRKAR-----LERVYELFP-RLKERRKQLAGTLSGGEQQMLAIARALMSRP 151 (222)
T ss_pred EEeccccccCCCCcHHHHHHHHhhhcCchhHHHH-----HHHHHHHHH-hhhhhhhCchhhCCHHHHHHHHHHHHHhcCC
Confidence 999999999986 999999875322211111111 111122111 1222333445579999999999999999999
Q ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHHHh
Q 000406 1472 RVLLLDEASSALDLESEKHVQDALRKVS-KRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLA 1539 (1560)
Q Consensus 1472 ~ILILDEaTSaLD~~Te~~I~~~L~~~~-~~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eLl~ 1539 (1560)
++|||||||++||+.+...+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 152 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (222)
T cd03224 152 KLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221 (222)
T ss_pred CEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHhc
Confidence 9999999999999999999999999875 47899999999999866 99999999999999999988764
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=395.25 Aligned_cols=212 Identities=32% Similarity=0.493 Sum_probs=183.8
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhhce
Q 000406 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQT 1392 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~~I 1392 (1560)
.|+++||+++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+. .++.|
T Consensus 2 ~L~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 76 (353)
T PRK10851 2 SIEIANIKKSFGR---TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKV 76 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCE
Confidence 3889999999963 359999999999999999999999999999999999999999999999999987654 46789
Q ss_pred EEEcCCCCCCC-ccHHHHHhcCCC------CCCH----HHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 000406 1393 ALVGQEPALFA-GTIRDNIALGNP------KASW----AEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRI 1461 (1560)
Q Consensus 1393 ~~VpQdp~LF~-gTIreNL~~g~~------~~sd----~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRL 1461 (1560)
+||||++.+|+ .|++||+.++.. ..+. +++.++++..++.++... ....||||||||+
T Consensus 77 ~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~LSgGq~QRv 145 (353)
T PRK10851 77 GFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADR-----------YPAQLSGGQKQRV 145 (353)
T ss_pred EEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhC-----------ChhhCCHHHHHHH
Confidence 99999999997 599999998632 1122 344555555555444333 3457999999999
Q ss_pred HHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHHH
Q 000406 1462 AIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSK--RATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLL 1538 (1560)
Q Consensus 1462 aLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~--~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eLl 1538 (1560)
+|||||+++|++|||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+.. ||||++|++|+|++.|++++++
T Consensus 146 alArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~ 225 (353)
T PRK10851 146 ALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVW 225 (353)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999998754 6899999999999766 9999999999999999999999
Q ss_pred hh
Q 000406 1539 AS 1540 (1560)
Q Consensus 1539 ~~ 1540 (1560)
++
T Consensus 226 ~~ 227 (353)
T PRK10851 226 RE 227 (353)
T ss_pred hC
Confidence 74
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=386.91 Aligned_cols=216 Identities=28% Similarity=0.445 Sum_probs=182.3
Q ss_pred EEEEEEEEEcCCCC--CccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCC----CCHHH
Q 000406 1314 IELKMVTFTYPSRP--EVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLRE----INVKW 1387 (1560)
Q Consensus 1314 I~~~nVsf~Y~~~~--~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~----i~l~~ 1387 (1560)
|+++||+|+|+... ..++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. .....
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999996321 1259999999999999999999999999999999999999999999999999863 34567
Q ss_pred HhhceEEEcCCC--CCCCccHHHHHhcCCC--CCCHHH----HHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHH
Q 000406 1388 LRKQTALVGQEP--ALFAGTIRDNIALGNP--KASWAE----IEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQ 1459 (1560)
Q Consensus 1388 LR~~I~~VpQdp--~LF~gTIreNL~~g~~--~~sd~e----I~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQ 1459 (1560)
+|+.++||+|+| .+|..|+.||+.++.. ..+.++ +.++++.+++.+ ........+|||||||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~----------~~~~~~~~~LSgGqkq 151 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLAD----------EFWEKSPFELSGGQMR 151 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCh----------hhccCCcccCCHHHHH
Confidence 899999999998 7999999999987632 123333 333343333321 1223445689999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCceEEEEecChHHHh-hcCEEEEEeCCEEEEecCHHHH
Q 000406 1460 RIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVS-KRATTIVVAHRLSTIR-EANMIAVVRDGAVVEYGSHETL 1537 (1560)
Q Consensus 1460 RLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~-~~~TvI~IAHRlsti~-~aDrIlVLd~G~IvE~Gt~~eL 1537 (1560)
|++|||||+.+|+||||||||++||+.+.+.+.+.|+++. +++|||+|||+++.+. .||||++|++|++++.|+++++
T Consensus 152 rvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~ 231 (288)
T PRK13643 152 RVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDV 231 (288)
T ss_pred HHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999998864 4789999999999885 5999999999999999999998
Q ss_pred Hh
Q 000406 1538 LA 1539 (1560)
Q Consensus 1538 l~ 1539 (1560)
..
T Consensus 232 ~~ 233 (288)
T PRK13643 232 FQ 233 (288)
T ss_pred Hc
Confidence 75
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=351.03 Aligned_cols=470 Identities=20% Similarity=0.229 Sum_probs=346.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccCChHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 000406 1040 LVGLGFGCIIFMTGQQGFCGWAGTKLTMRVRELLFRSILKQEPGWFDFEENSTGVLVSRLSIDSISFRSVLGDRFSVLLM 1119 (1560)
Q Consensus 1040 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~ll~~~~~ffd~~~~~~G~il~R~s~Di~~i~~~l~~~l~~~l~ 1119 (1560)
++++..+..+...+........++.+..++|.++.++++..|+.-++ +-..++++.++++|+.++. +-...++.+.+
T Consensus 54 f~~llllf~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerie--r~~~~rlla~L~~Dvr~IS-f~~s~lp~~~q 130 (546)
T COG4615 54 FLGLLLLFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIE--RLGSARLLAGLTSDVRNIS-FAFSRLPELVQ 130 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH--Hhcccchhhhhccccccee-ehHhhhHHHHH
Confidence 34444444455556666777889999999999999999999987654 7899999999999999987 55667788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcchhhhhhhHHHHHHHHHHHhcchhHHHhccchHHH--
Q 000406 1120 GLSSAAVGLGVSLVLNWRLTLVAAALTPFTLGASY-LSLIINVGPKIDNSSYAKASSIASGAVSNIRTVTTFSAQEQI-- 1196 (1560)
Q Consensus 1120 ~~~~~i~~l~~~~~~~~~l~lv~l~~ipl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~e~~~-- 1196 (1560)
+.+..+++++.+.++++.+.++.++.+.+.+...+ .+.+........++...+..+..+..++|.+.++..+.-.+.
T Consensus 131 a~il~l~s~aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h 210 (546)
T COG4615 131 AIILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVH 210 (546)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHH
Confidence 88888889999999999887776666655554433 333444444444566677788888889999998876543222
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 000406 1197 INSFDKALSEPKKKSVKRSQILGLTLGFSQGAMYVAYTFTLWFGAYLVKQGHASFGVVYKIFLILVLSSFSVGQLAGLAP 1276 (1560)
Q Consensus 1197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~s~g~~~~~~~~~~~~~~~i~~l~~~~~ 1276 (1560)
.+.+...-....+...+..........+++.+++....+.+|+...+. .-+......+.+.+.+.-.|+.+.++..+
T Consensus 211 ~~~~~~~a~~~r~~~~~~n~f~~la~~~~ni~l~~lIGlvf~lal~~~---w~st~~a~tivlvlLflr~pL~s~vgilP 287 (546)
T COG4615 211 NNLYIPDAQEYRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLALSLG---WASTNVAATIVLVLLFLRTPLLSAVGILP 287 (546)
T ss_pred hhhcCcchHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cchhhHHHHHHHHHHHHhhHHHHHHhhhh
Confidence 222222222222211111111123334444444444455555544332 22333333355555666779999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCcccccc-ccccCCCCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCH
Q 000406 1277 DTSMAATAIPAVLQITKRKPLIDNVK-GRKLERSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGK 1355 (1560)
Q Consensus 1277 ~~~~~~~s~~ri~~i~~~~~~~~~~~-~~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGK 1355 (1560)
....+.++.+++.++...++..+-.. ...+.| ..||++||.|+|+... --+..||++|++||.|=|+|.|||||
T Consensus 288 ~l~~AqvA~~kiakle~~~~~a~~~~~q~~p~~---~~lelrnvrfay~~~~--FhvgPiNl~ikrGelvFliG~NGsGK 362 (546)
T COG4615 288 TLLTAQVAFNKIAKLELAPYKADFPRPQAFPDW---KTLELRNVRFAYQDNA--FHVGPINLTIKRGELVFLIGGNGSGK 362 (546)
T ss_pred HHHHHHHHHHHHHHhhcCCccccCCCCCcCCcc---cceeeeeeeeccCccc--ceecceeeEEecCcEEEEECCCCCcH
Confidence 99999999999999876433222111 111222 3699999999997542 45889999999999999999999999
Q ss_pred HHHHHHHhcccCCCccEEEECCEecCCCCHHHHhhceEEEcCCCCCCCccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHH
Q 000406 1356 STVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHKFI 1435 (1560)
Q Consensus 1356 STLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~~I~~VpQdp~LF~gTIreNL~~g~~~~sd~eI~~al~~a~l~~~I 1435 (1560)
||++++|.|+|.|++|+|++||.+++.-++++.|+-++-|+-|-+||+.++- ++..++.+.+..-++...+....
T Consensus 363 ST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~-----~e~~as~q~i~~~LqrLel~~kt 437 (546)
T COG4615 363 STLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLG-----PEGKASPQLIEKWLQRLELAHKT 437 (546)
T ss_pred HHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhC-----CccCCChHHHHHHHHHHHHhhhh
Confidence 9999999999999999999999999999999999999999999999997651 12236677777766666554433
Q ss_pred HhCCCCccccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHh--cCCceEEEEecChHH
Q 000406 1436 SSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKV--SKRATTIVVAHRLST 1513 (1560)
Q Consensus 1436 ~~Lp~Gldt~Vge~G~~LSGGQrQRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~--~~~~TvI~IAHRlst 1513 (1560)
++.+|==++ ..||-|||.|+|+--|++-+.+|++|||=-+--||.=.+...+.+--. ..|+||+.|||+-.-
T Consensus 438 -sl~d~~fs~-----~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~Y 511 (546)
T COG4615 438 -SLNDGRFSN-----LKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHY 511 (546)
T ss_pred -cccCCcccc-----cccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchh
Confidence 233332222 359999999999999999999999999999999999999998887543 358999999999999
Q ss_pred HhhcCEEEEEeCCEEEEe
Q 000406 1514 IREANMIAVVRDGAVVEY 1531 (1560)
Q Consensus 1514 i~~aDrIlVLd~G~IvE~ 1531 (1560)
-..|||++.|++|+++|.
T Consensus 512 F~~ADrll~~~~G~~~e~ 529 (546)
T COG4615 512 FIHADRLLEMRNGQLSEL 529 (546)
T ss_pred hhhHHHHHHHhcCceeec
Confidence 999999999999999986
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-40 Score=377.88 Aligned_cols=218 Identities=31% Similarity=0.518 Sum_probs=183.2
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhhceE
Q 000406 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTA 1393 (1560)
Q Consensus 1314 I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~~I~ 1393 (1560)
++++||+++|+.. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+...+|+.++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (242)
T cd03295 1 IEFENVTKRYGGG--KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG 78 (242)
T ss_pred CEEEEEEEEeCCc--ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE
Confidence 4789999999641 35999999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEcCCCCCCC-ccHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHHhCCCCccc--cccCCCCCCChHHHHHHHHHHHHc
Q 000406 1394 LVGQEPALFA-GTIRDNIALGNP--KASWAEIEEAAEEAYIHKFISSLPQGYET--QVGESGVQLSGGQKQRIAIARAIL 1468 (1560)
Q Consensus 1394 ~VpQdp~LF~-gTIreNL~~g~~--~~sd~eI~~al~~a~l~~~I~~Lp~Gldt--~Vge~G~~LSGGQrQRLaLARALL 1468 (1560)
|+||++.+|. .|++||+.++.. ..+.++. ...+.+.+..+ |+.. .....+.+||||||||++|||||+
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~l--~l~~~~~~~~~~~~LS~G~~qrv~laral~ 151 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKLLKWPKEKI-----RERADELLALV--GLDPAEFADRYPHELSGGQQQRVGVARALA 151 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHHcCCCHHHH-----HHHHHHHHHHc--CCCcHHHHhcChhhCCHHHHHHHHHHHHHh
Confidence 9999999986 699999986421 1121111 11122333333 2332 334556789999999999999999
Q ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHHHhh
Q 000406 1469 KGSRVLLLDEASSALDLESEKHVQDALRKVSK--RATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLAS 1540 (1560)
Q Consensus 1469 r~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~--~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eLl~~ 1540 (1560)
++|++|||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++.++
T Consensus 152 ~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 226 (242)
T cd03295 152 ADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226 (242)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcC
Confidence 99999999999999999999999999998753 7899999999998765 999999999999999999999763
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-40 Score=377.87 Aligned_cols=212 Identities=30% Similarity=0.484 Sum_probs=180.2
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCH---HHHhh
Q 000406 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINV---KWLRK 1390 (1560)
Q Consensus 1314 I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l---~~LR~ 1390 (1560)
|+++||+++|+. +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++..++. ..+|+
T Consensus 2 l~~~~l~~~~~~--~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred eEEEeeeeecCC--CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 689999999962 2359999999999999999999999999999999999999999999999999987654 34688
Q ss_pred ceEEEcCCCCCCC-ccHHHHHhcCCCC--------------CCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCCh
Q 000406 1391 QTALVGQEPALFA-GTIRDNIALGNPK--------------ASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSG 1455 (1560)
Q Consensus 1391 ~I~~VpQdp~LF~-gTIreNL~~g~~~--------------~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSG 1455 (1560)
.++|+||++.+|. .|++||+.++... ..++++.++++..++. .........|||
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSg 148 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLA-----------DKAYQRADQLSG 148 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcH-----------hhhcCCcccCCH
Confidence 9999999998886 6999999864211 0112334444444443 333445568999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CceEEEEecChHHHhh-cCEEEEEeCCEEEEec
Q 000406 1456 GQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSK--RATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYG 1532 (1560)
Q Consensus 1456 GQrQRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~--~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~G 1532 (1560)
|||||++|||||+++|+||||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 149 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~ 228 (243)
T TIGR02315 149 GQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDG 228 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 999999999999999999999999999999999999999998743 6899999999999865 9999999999999999
Q ss_pred CHHHHH
Q 000406 1533 SHETLL 1538 (1560)
Q Consensus 1533 t~~eLl 1538 (1560)
+++++.
T Consensus 229 ~~~~~~ 234 (243)
T TIGR02315 229 APSELD 234 (243)
T ss_pred CHHHhC
Confidence 999874
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=376.89 Aligned_cols=219 Identities=28% Similarity=0.482 Sum_probs=194.8
Q ss_pred CccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhh
Q 000406 1311 PLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRK 1390 (1560)
Q Consensus 1311 ~~~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~ 1390 (1560)
...|+++||++.. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|
T Consensus 37 ~~~l~i~nls~~~-----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g------------- 98 (282)
T cd03291 37 DNNLFFSNLCLVG-----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG------------- 98 (282)
T ss_pred CCeEEEEEEEEec-----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-------------
Confidence 4469999999852 3599999999999999999999999999999999999999999999998
Q ss_pred ceEEEcCCCCCCCccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHccC
Q 000406 1391 QTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKG 1470 (1560)
Q Consensus 1391 ~I~~VpQdp~LF~gTIreNL~~g~~~~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLARALLr~ 1470 (1560)
.++|+||++.+|++|++||+.++.. ....++.++++.+++.+.+..+|.++++.+++.+..||||||||++|||||+++
T Consensus 99 ~i~yv~q~~~l~~~tv~enl~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~ 177 (282)
T cd03291 99 RISFSSQFSWIMPGTIKENIIFGVS-YDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKD 177 (282)
T ss_pred EEEEEeCcccccccCHHHHhhcccc-cCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcC
Confidence 3999999999999999999987532 234456777888888999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCcCCCHHHHHHHHHHH-HHhcCCceEEEEecChHHHhhcCEEEEEeCCEEEEecCHHHHHhhccChHHHHH
Q 000406 1471 SRVLLLDEASSALDLESEKHVQDAL-RKVSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETLLASHLNGVYASL 1549 (1560)
Q Consensus 1471 p~ILILDEaTSaLD~~Te~~I~~~L-~~~~~~~TvI~IAHRlsti~~aDrIlVLd~G~IvE~Gt~~eLl~~~~~g~y~~l 1549 (1560)
|+||||||||++||+.+...+.+.+ ++..+++|+|+|||+++.+..||+|++|++|++++.|+++++.+ ....|.+.
T Consensus 178 p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~--~~~~~~~~ 255 (282)
T cd03291 178 ADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQS--LRPDFSSK 255 (282)
T ss_pred CCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHh--cchHHHHH
Confidence 9999999999999999999998754 55556789999999999998899999999999999999999986 23455544
Q ss_pred H
Q 000406 1550 V 1550 (1560)
Q Consensus 1550 ~ 1550 (1560)
+
T Consensus 256 ~ 256 (282)
T cd03291 256 L 256 (282)
T ss_pred H
Confidence 4
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-40 Score=382.70 Aligned_cols=216 Identities=29% Similarity=0.491 Sum_probs=187.9
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhhce
Q 000406 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQT 1392 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~~I 1392 (1560)
-|+++||+++|+.....++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+...+|+.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48999999999743234599999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEEcCCC--CCCCccHHHHHhcCCC--CCCHHH----HHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 000406 1393 ALVGQEP--ALFAGTIRDNIALGNP--KASWAE----IEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIA 1464 (1560)
Q Consensus 1393 ~~VpQdp--~LF~gTIreNL~~g~~--~~sd~e----I~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLA 1464 (1560)
+|+||+| .++..|+.|||.++.. ..+.++ +.++++.+++.++... ....||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTR-----------EPARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhC-----------CcccCCHHHHHHHHHH
Confidence 9999998 4778899999986421 223333 3455555565544332 3457999999999999
Q ss_pred HHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CceEEEEecChHHHhhcCEEEEEeCCEEEEecCHHHHHh
Q 000406 1465 RAILKGSRVLLLDEASSALDLESEKHVQDALRKVSK--RATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETLLA 1539 (1560)
Q Consensus 1465 RALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~--~~TvI~IAHRlsti~~aDrIlVLd~G~IvE~Gt~~eLl~ 1539 (1560)
|||+++|+||||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+..||+|++|++|++++.|+++++++
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFA 229 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999998754 789999999999998899999999999999999999886
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-40 Score=380.63 Aligned_cols=219 Identities=30% Similarity=0.460 Sum_probs=187.5
Q ss_pred CccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCC-----CccEEEECCEecCC--C
Q 000406 1311 PLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDP-----NQGKVMIEGVDLRE--I 1383 (1560)
Q Consensus 1311 ~~~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p-----~~G~I~IdGvdi~~--i 1383 (1560)
...|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||.++.. .
T Consensus 17 ~~~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~ 93 (267)
T PRK14235 17 EIKMRARDVSVFYGE---KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL 93 (267)
T ss_pred CceEEEEeEEEEECC---EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc
Confidence 346999999999963 3599999999999999999999999999999999999975 89999999999875 3
Q ss_pred CHHHHhhceEEEcCCCCCCCccHHHHHhcCCC--CC--C----HHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCCh
Q 000406 1384 NVKWLRKQTALVGQEPALFAGTIRDNIALGNP--KA--S----WAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSG 1455 (1560)
Q Consensus 1384 ~l~~LR~~I~~VpQdp~LF~gTIreNL~~g~~--~~--s----d~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSG 1455 (1560)
+...+|+.++|+||++.+|..|++||+.++.. .. + .+++.++++.+++.+.+. ......+..|||
T Consensus 94 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSg 166 (267)
T PRK14235 94 DVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK-------DRLHEPGTGLSG 166 (267)
T ss_pred chHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCH
Confidence 45678899999999999999999999986421 10 1 234556666666644332 223345568999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHHHhh-cCEEEEEeCCEEEEecCH
Q 000406 1456 GQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSH 1534 (1560)
Q Consensus 1456 GQrQRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~ 1534 (1560)
|||||++|||||+.+|+||||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|++
T Consensus 167 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~ 246 (267)
T PRK14235 167 GQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDT 246 (267)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999988777899999999999965 899999999999999999
Q ss_pred HHHHh
Q 000406 1535 ETLLA 1539 (1560)
Q Consensus 1535 ~eLl~ 1539 (1560)
+++..
T Consensus 247 ~~~~~ 251 (267)
T PRK14235 247 EKMFT 251 (267)
T ss_pred HHHHh
Confidence 99986
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=383.53 Aligned_cols=218 Identities=32% Similarity=0.482 Sum_probs=182.8
Q ss_pred EEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHH----hh
Q 000406 1315 ELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWL----RK 1390 (1560)
Q Consensus 1315 ~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~L----R~ 1390 (1560)
.++||++.|.. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+...+ ++
T Consensus 26 ~~~~~~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~ 102 (269)
T cd03294 26 SKEEILKKTGQ---TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK 102 (269)
T ss_pred hhhhhhhhcCC---ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcC
Confidence 46677777753 358999999999999999999999999999999999999999999999999988776543 46
Q ss_pred ceEEEcCCCCCCC-ccHHHHHhcCCC--CCC----HHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 000406 1391 QTALVGQEPALFA-GTIRDNIALGNP--KAS----WAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAI 1463 (1560)
Q Consensus 1391 ~I~~VpQdp~LF~-gTIreNL~~g~~--~~s----d~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaL 1463 (1560)
+++|+||++.+|. .|++||+.++.. ... ++++.++++..++.+++...| .+||||||||++|
T Consensus 103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrv~l 171 (269)
T cd03294 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYP-----------DELSGGMQQRVGL 171 (269)
T ss_pred cEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCc-----------ccCCHHHHHHHHH
Confidence 7999999999885 699999986421 111 234556666666655544433 4799999999999
Q ss_pred HHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHHHhh
Q 000406 1464 ARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSK--RATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLAS 1540 (1560)
Q Consensus 1464 ARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~--~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eLl~~ 1540 (1560)
||||+++|+||||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|++++++++
T Consensus 172 Aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 251 (269)
T cd03294 172 ARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999998743 7899999999999865 999999999999999999999874
Q ss_pred ccChHHH
Q 000406 1541 HLNGVYA 1547 (1560)
Q Consensus 1541 ~~~g~y~ 1547 (1560)
....|.
T Consensus 252 -~~~~~~ 257 (269)
T cd03294 252 -PANDYV 257 (269)
T ss_pred -cCcHHH
Confidence 333344
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-40 Score=393.94 Aligned_cols=216 Identities=31% Similarity=0.488 Sum_probs=184.5
Q ss_pred cEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHHHhccE
Q 000406 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQI 751 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 751 (1560)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...++. +++|
T Consensus 6 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 80 (351)
T PRK11432 6 FVVLKNITKRFGS---NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ--QRDI 80 (351)
T ss_pred EEEEEeEEEEECC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 5999999999963 4589999999999999999999999999999999999999999999999999876643 4689
Q ss_pred EEEecCCcCccc-cHHHHHhcCCCC--CCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHHhcc
Q 000406 752 GMVGQEPILFAT-SILENVLMGKEN--ATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIK 828 (1560)
Q Consensus 752 ~~v~Q~~~lf~~-Tv~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARAl~~ 828 (1560)
+||+|++.+|+. ||+|||.|+... ...++..+. +++.++.+ |+....+..+.+|||||||||+|||||+.
T Consensus 81 g~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~-----v~~~l~~~--gl~~~~~r~~~~LSgGq~QRVaLARaL~~ 153 (351)
T PRK11432 81 CMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQR-----VKEALELV--DLAGFEDRYVDQISGGQQQRVALARALIL 153 (351)
T ss_pred EEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHH-----HHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHHc
Confidence 999999999976 999999987431 122222111 12223332 45455567778999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhHhhh
Q 000406 829 DPRILLLDEPTSALDSESESIVQQAIDKISV--GRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLER 899 (1560)
Q Consensus 829 ~p~illLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l~~~ 899 (1560)
+|+|||||||||+||+.++..+.+.|+++.+ |.|+|+|||+++.+.. ||+|++|++|+|++.|+++++..+
T Consensus 154 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~ 227 (351)
T PRK11432 154 KPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQ 227 (351)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999998743 8999999999999865 999999999999999999998764
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-40 Score=389.86 Aligned_cols=228 Identities=26% Similarity=0.382 Sum_probs=187.6
Q ss_pred cEEEEEEEEEcCCCC----------CccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCC
Q 000406 1313 GIELKMVTFTYPSRP----------EVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLRE 1382 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~~----------~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~ 1382 (1560)
-|+++||+++|+.+. ...+|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 489999999996321 2469999999999999999999999999999999999999999999999999998
Q ss_pred CCHH---HHhhceEEEcCCC--CCC-CccHHHHHhcC----CCCCCHHHH----HHHHHHHhHHHHHHhCCCCccccccC
Q 000406 1383 INVK---WLRKQTALVGQEP--ALF-AGTIRDNIALG----NPKASWAEI----EEAAEEAYIHKFISSLPQGYETQVGE 1448 (1560)
Q Consensus 1383 i~l~---~LR~~I~~VpQdp--~LF-~gTIreNL~~g----~~~~sd~eI----~~al~~a~l~~~I~~Lp~Gldt~Vge 1448 (1560)
++.. .+|++|+||+|+| .|+ ..||.+||.++ .+..+.++. .++++.+++. +.....
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~----------~~~~~~ 157 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLL----------PNLINR 157 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCC----------hHHhcC
Confidence 8754 4678999999999 477 47999998642 112343333 3334444331 112334
Q ss_pred CCCCCChHHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CceEEEEecChHHHhh-cCEEEEEeC
Q 000406 1449 SGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSK--RATTIVVAHRLSTIRE-ANMIAVVRD 1525 (1560)
Q Consensus 1449 ~G~~LSGGQrQRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~--~~TvI~IAHRlsti~~-aDrIlVLd~ 1525 (1560)
...+||||||||++|||||+.+|+||||||||++||+.+...|.+.|+++.+ +.|+|+|||+++.+.. ||||+||++
T Consensus 158 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~ 237 (331)
T PRK15079 158 YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYL 237 (331)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 4568999999999999999999999999999999999999999999998754 7899999999999976 999999999
Q ss_pred CEEEEecCHHHHHhhccChHHHH-HHH
Q 000406 1526 GAVVEYGSHETLLASHLNGVYAS-LVR 1551 (1560)
Q Consensus 1526 G~IvE~Gt~~eLl~~~~~g~y~~-l~~ 1551 (1560)
|+|+|.|++++++++. ...|.+ ++.
T Consensus 238 G~ive~g~~~~i~~~~-~~py~~~l~~ 263 (331)
T PRK15079 238 GHAVELGTYDEVYHNP-LHPYTKALMS 263 (331)
T ss_pred CEEEEEcCHHHHHcCC-CCHHHHHHHh
Confidence 9999999999999743 334543 443
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-40 Score=393.75 Aligned_cols=212 Identities=33% Similarity=0.546 Sum_probs=187.0
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhhce
Q 000406 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQT 1392 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~~I 1392 (1560)
.|+++|++++|.+ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++..+++. ++.|
T Consensus 14 ~L~l~~l~~~~~~---~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 88 (375)
T PRK09452 14 LVELRGISKSFDG---KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHV 88 (375)
T ss_pred eEEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 5999999999963 3589999999999999999999999999999999999999999999999999887764 5789
Q ss_pred EEEcCCCCCCCc-cHHHHHhcCCC--CCCH----HHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 000406 1393 ALVGQEPALFAG-TIRDNIALGNP--KASW----AEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIAR 1465 (1560)
Q Consensus 1393 ~~VpQdp~LF~g-TIreNL~~g~~--~~sd----~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLAR 1465 (1560)
+||+|++.||+. ||+|||.++.. ..+. +++.++++..++.++....| .+||||||||+||||
T Consensus 89 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----------~~LSgGq~QRVaLAR 157 (375)
T PRK09452 89 NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKP-----------HQLSGGQQQRVAIAR 157 (375)
T ss_pred EEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHHHHH
Confidence 999999999965 99999998632 1222 34566676667766655544 479999999999999
Q ss_pred HHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHHHhh
Q 000406 1466 AILKGSRVLLLDEASSALDLESEKHVQDALRKVSK--RATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLAS 1540 (1560)
Q Consensus 1466 ALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~--~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eLl~~ 1540 (1560)
||+++|+|||||||||+||..+...+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|+|++.|++++++.+
T Consensus 158 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~ 235 (375)
T PRK09452 158 AVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEE 235 (375)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999999999999998754 6899999999999765 999999999999999999999974
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=375.49 Aligned_cols=214 Identities=36% Similarity=0.556 Sum_probs=178.1
Q ss_pred EEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCC-----CCCccEEEECCeecCCcc--HH
Q 000406 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFY-----DPTKGLITLDGHDLKSLQ--VK 745 (1560)
Q Consensus 673 i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~-----~~~~G~I~i~g~~i~~~~--~~ 745 (1560)
|+++||+++|+. .++|+|+||+|++||+++|+|+||||||||+++|+|++ +|++|+|.++|.++...+ ..
T Consensus 1 i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 1 IELRDLNVYYGD---KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred CEEEEEEEEcCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence 578999999964 35899999999999999999999999999999999999 999999999999987765 45
Q ss_pred HHhccEEEEecCCcCccccHHHHHhcCCCCC---CHHHHHHHHHHhhhHHHHHhCCCCCCcccCCC--CCCCChHHHHHH
Q 000406 746 WLRTQIGMVGQEPILFATSILENVLMGKENA---TMKEAVAACKAASAHSFISELPLGYDTQVGDR--GTQLSGGQKQRI 820 (1560)
Q Consensus 746 ~lr~~i~~v~Q~~~lf~~Tv~eNi~~g~~~~---~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~--g~~LSgGQrQRi 820 (1560)
.++++++|++|++.+|..|++||+.++.... ..++..+ .+.+.++.+ |+....... +.+||||||||+
T Consensus 78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~~LSgG~~qrv 150 (227)
T cd03260 78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDE-----RVEEALRKA--ALWDEVKDRLHALGLSGGQQQRL 150 (227)
T ss_pred HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHH-----HHHHHHHHc--CCChHHhccCCcccCCHHHHHHH
Confidence 6778899999999999779999998753211 1111111 112223333 443333333 479999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhH
Q 000406 821 ALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQL 896 (1560)
Q Consensus 821 alARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l 896 (1560)
+|||||+.+|++|||||||++||+.++..+.+.|+++.+.+|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 151 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (227)
T cd03260 151 CLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227 (227)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcccC
Confidence 9999999999999999999999999999999999988545899999999999865 999999999999999987653
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-40 Score=379.34 Aligned_cols=217 Identities=28% Similarity=0.431 Sum_probs=184.6
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCC-----CccEEEECCEecC--CCCH
Q 000406 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDP-----NQGKVMIEGVDLR--EINV 1385 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p-----~~G~I~IdGvdi~--~i~l 1385 (1560)
.|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||.++. +.+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (253)
T PRK14267 4 AIETVNLRVYYGS---NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDP 80 (253)
T ss_pred eEEEEeEEEEeCC---eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccCh
Confidence 4899999999963 3599999999999999999999999999999999999987 4999999999997 4556
Q ss_pred HHHhhceEEEcCCCCCCCc-cHHHHHhcCCC--C--CCH----HHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChH
Q 000406 1386 KWLRKQTALVGQEPALFAG-TIRDNIALGNP--K--ASW----AEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGG 1456 (1560)
Q Consensus 1386 ~~LR~~I~~VpQdp~LF~g-TIreNL~~g~~--~--~sd----~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGG 1456 (1560)
..+|++++|+||++.+|.. |++||+.++.. . ... +++.++++..++.+.+. ........+||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G 153 (253)
T PRK14267 81 IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVK-------DRLNDYPSNLSGG 153 (253)
T ss_pred HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchh-------hhhccChhhCCHH
Confidence 6788999999999999975 99999986421 1 011 23445555555433221 2234455689999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHH
Q 000406 1457 QKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHE 1535 (1560)
Q Consensus 1457 QrQRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~ 1535 (1560)
||||++|||||+++|+||||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++
T Consensus 154 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 233 (253)
T PRK14267 154 QRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTR 233 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999988777999999999999865 9999999999999999999
Q ss_pred HHHh
Q 000406 1536 TLLA 1539 (1560)
Q Consensus 1536 eLl~ 1539 (1560)
++++
T Consensus 234 ~~~~ 237 (253)
T PRK14267 234 KVFE 237 (253)
T ss_pred HHHh
Confidence 9986
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-40 Score=373.23 Aligned_cols=216 Identities=29% Similarity=0.481 Sum_probs=182.6
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhhceE
Q 000406 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTA 1393 (1560)
Q Consensus 1314 I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~~I~ 1393 (1560)
++++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+... ++.++
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i~ 77 (236)
T TIGR03864 2 LEVAGLSFAYGA---RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARLG 77 (236)
T ss_pred EEEEeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhEE
Confidence 689999999963 46999999999999999999999999999999999999999999999999998776544 46899
Q ss_pred EEcCCCCC-CCccHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHccC
Q 000406 1394 LVGQEPAL-FAGTIRDNIALGNP--KASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKG 1470 (1560)
Q Consensus 1394 ~VpQdp~L-F~gTIreNL~~g~~--~~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLARALLr~ 1470 (1560)
|+||++.+ +..|+++|+.++.. ..+.++..+ .+.+++..+ |++........+||||||||++|||||+++
T Consensus 78 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrl~laral~~~ 150 (236)
T TIGR03864 78 VVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARE-----RIAALLARL--GLAERADDKVRELNGGHRRRVEIARALLHR 150 (236)
T ss_pred EeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999987 56799999986421 122222111 123333333 444445556668999999999999999999
Q ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHhc--CCceEEEEecChHHHhhcCEEEEEeCCEEEEecCHHHHHhh
Q 000406 1471 SRVLLLDEASSALDLESEKHVQDALRKVS--KRATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETLLAS 1540 (1560)
Q Consensus 1471 p~ILILDEaTSaLD~~Te~~I~~~L~~~~--~~~TvI~IAHRlsti~~aDrIlVLd~G~IvE~Gt~~eLl~~ 1540 (1560)
|+||||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+..||+|++|++|++++.|+++++.++
T Consensus 151 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 151 PALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred CCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 99999999999999999999999999875 37899999999999988999999999999999999999863
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=372.17 Aligned_cols=203 Identities=36% Similarity=0.545 Sum_probs=172.3
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhhceE
Q 000406 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTA 1393 (1560)
Q Consensus 1314 I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~~I~ 1393 (1560)
++++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+. .++.++
T Consensus 1 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~~i~ 75 (213)
T cd03259 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERRNIG 75 (213)
T ss_pred CeeeeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhccEE
Confidence 578999999963 359999999999999999999999999999999999999999999999999976543 467899
Q ss_pred EEcCCCCCCC-ccHHHHHhcCCCC--CC----HHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 000406 1394 LVGQEPALFA-GTIRDNIALGNPK--AS----WAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARA 1466 (1560)
Q Consensus 1394 ~VpQdp~LF~-gTIreNL~~g~~~--~s----d~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLARA 1466 (1560)
|+||++.+|. .|++||+.++... .+ .+++.++++..++.++ ......+||||||||++||||
T Consensus 76 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrl~la~a 144 (213)
T cd03259 76 MVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGL-----------LNRYPHELSGGQQQRVALARA 144 (213)
T ss_pred EEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhh-----------hhcChhhCCHHHHHHHHHHHH
Confidence 9999998886 6999999864211 11 1234445555444433 333345799999999999999
Q ss_pred HccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc--CCceEEEEecChHHHhh-cCEEEEEeCCEEEEec
Q 000406 1467 ILKGSRVLLLDEASSALDLESEKHVQDALRKVS--KRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYG 1532 (1560)
Q Consensus 1467 LLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~--~~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~G 1532 (1560)
|+++|+||||||||++||+.+.+.+.+.|++.. .++|||+|||+++.+.. ||+|++|++|++++.|
T Consensus 145 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 145 LAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999864 37899999999998865 9999999999998875
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-40 Score=395.06 Aligned_cols=217 Identities=26% Similarity=0.450 Sum_probs=184.5
Q ss_pred cEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHHHhccE
Q 000406 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQI 751 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 751 (1560)
.|+++|++++|++ +..+|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.+.++. +++|
T Consensus 3 ~l~i~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 78 (356)
T PRK11650 3 GLKLQAVRKSYDG--KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDI 78 (356)
T ss_pred EEEEEeEEEEeCC--CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 4899999999942 24689999999999999999999999999999999999999999999999999877654 3689
Q ss_pred EEEecCCcCccc-cHHHHHhcCCCC--CCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHHhcc
Q 000406 752 GMVGQEPILFAT-SILENVLMGKEN--ATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIK 828 (1560)
Q Consensus 752 ~~v~Q~~~lf~~-Tv~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARAl~~ 828 (1560)
+||+|++.+|+. ||+|||.++... .+..+..+ .+.+.++.+ |++...+..+.+|||||||||+|||||++
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~~~LSgGq~QRvalARAL~~ 151 (356)
T PRK11650 79 AMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEE-----RVAEAARIL--ELEPLLDRKPRELSGGQRQRVAMGRAIVR 151 (356)
T ss_pred EEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHH-----HHHHHHHHc--CChhHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 999999999975 999999987531 12222111 112233333 55555667778999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhHhhh
Q 000406 829 DPRILLLDEPTSALDSESESIVQQAIDKISV--GRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLER 899 (1560)
Q Consensus 829 ~p~illLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l~~~ 899 (1560)
+|+|||||||||+||+.++..+.+.|+++.+ |.|+|+|||+++.+.. ||+|++|++|++++.|+++++..+
T Consensus 152 ~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~ 225 (356)
T PRK11650 152 EPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEK 225 (356)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhC
Confidence 9999999999999999999999999988743 8999999999998865 999999999999999999998764
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-40 Score=383.30 Aligned_cols=214 Identities=25% Similarity=0.463 Sum_probs=184.3
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecC--CCCHHHHhh
Q 000406 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLR--EINVKWLRK 1390 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~--~i~l~~LR~ 1390 (1560)
-|+++||+++|+. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++. ..+...+|+
T Consensus 5 ~l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 5 ILKVEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred eEEEEeEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 4899999999963 245999999999999999999999999999999999999999999999999984 344567889
Q ss_pred ceEEEcCCC--CCCCccHHHHHhcCCC--CCCH----HHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHH
Q 000406 1391 QTALVGQEP--ALFAGTIRDNIALGNP--KASW----AEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIA 1462 (1560)
Q Consensus 1391 ~I~~VpQdp--~LF~gTIreNL~~g~~--~~sd----~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLa 1462 (1560)
.++|+||++ .+|+.|++||+.++.. ..+. +.+.++++..++.++ ......+||||||||++
T Consensus 83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~-----------~~~~~~~LS~G~~qrl~ 151 (283)
T PRK13636 83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHL-----------KDKPTHCLSFGQKKRVA 151 (283)
T ss_pred hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhh-----------hhCCcccCCHHHHHHHH
Confidence 999999998 5789999999987421 2232 234455555555433 33445689999999999
Q ss_pred HHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CceEEEEecChHHHh-hcCEEEEEeCCEEEEecCHHHHHh
Q 000406 1463 IARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSK--RATTIVVAHRLSTIR-EANMIAVVRDGAVVEYGSHETLLA 1539 (1560)
Q Consensus 1463 LARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~--~~TvI~IAHRlsti~-~aDrIlVLd~G~IvE~Gt~~eLl~ 1539 (1560)
|||||+.+|+||||||||++||+.+.+.+.+.|+++.+ ++|||++||+++.+. .||||++|++|++++.|+++++++
T Consensus 152 laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 152 IAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999998754 789999999999997 499999999999999999999886
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-40 Score=374.26 Aligned_cols=215 Identities=35% Similarity=0.512 Sum_probs=182.3
Q ss_pred EEEEEEEEEcCCCC-CccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHH---HHh
Q 000406 1314 IELKMVTFTYPSRP-EVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVK---WLR 1389 (1560)
Q Consensus 1314 I~~~nVsf~Y~~~~-~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~---~LR 1389 (1560)
|+++||+++|+... ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+.. .+|
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 78999999996421 12699999999999999999999999999999999999999999999999999877654 357
Q ss_pred hceEEEcCCCCCCC-ccHHHHHhcCCC--CCC----HHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHH
Q 000406 1390 KQTALVGQEPALFA-GTIRDNIALGNP--KAS----WAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIA 1462 (1560)
Q Consensus 1390 ~~I~~VpQdp~LF~-gTIreNL~~g~~--~~s----d~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLa 1462 (1560)
+.++|+||++.+|. .|++||+.++.. ..+ .+++.++++..++.+. ......+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~ 150 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDK-----------ADAYPAQLSGGQKQRVG 150 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhh-----------hhcChhhCCHHHHHHHH
Confidence 89999999999997 699999986421 112 2234445555444433 33344579999999999
Q ss_pred HHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHHHh
Q 000406 1463 IARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSK--RATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLA 1539 (1560)
Q Consensus 1463 LARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~--~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eLl~ 1539 (1560)
|||||+++|++|||||||++||+.+...+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++++
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 99999999999999999999999999999999998753 7899999999999876 99999999999999999998875
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-40 Score=377.11 Aligned_cols=213 Identities=31% Similarity=0.467 Sum_probs=181.6
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCC---------
Q 000406 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREIN--------- 1384 (1560)
Q Consensus 1314 I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~--------- 1384 (1560)
|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++..++
T Consensus 1 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (252)
T TIGR03005 1 VRFSDVTKRFGI---LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPA 77 (252)
T ss_pred CEEEEEEEEeCC---eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccccc
Confidence 579999999963 35999999999999999999999999999999999999999999999999987653
Q ss_pred ----HHHHhhceEEEcCCCCCCC-ccHHHHHhcCCC---CCCH----HHHHHHHHHHhHHHHHHhCCCCccccccCCCCC
Q 000406 1385 ----VKWLRKQTALVGQEPALFA-GTIRDNIALGNP---KASW----AEIEEAAEEAYIHKFISSLPQGYETQVGESGVQ 1452 (1560)
Q Consensus 1385 ----l~~LR~~I~~VpQdp~LF~-gTIreNL~~g~~---~~sd----~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~ 1452 (1560)
...+|+.++|++|++.+|. .|++||+.++.. .... +++.++++..++.+ .+......
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~ 146 (252)
T TIGR03005 78 DEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLAD-----------KADHMPAQ 146 (252)
T ss_pred chhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-----------HhhcChhh
Confidence 2467889999999999885 799999986411 1122 23444444444433 33444568
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CceEEEEecChHHHhh-cCEEEEEeCCEEE
Q 000406 1453 LSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSK--RATTIVVAHRLSTIRE-ANMIAVVRDGAVV 1529 (1560)
Q Consensus 1453 LSGGQrQRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~--~~TvI~IAHRlsti~~-aDrIlVLd~G~Iv 1529 (1560)
||||||||++|||||+++|++|||||||++||+.+...+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|+++
T Consensus 147 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 226 (252)
T TIGR03005 147 LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIV 226 (252)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999998753 7899999999999865 9999999999999
Q ss_pred EecCHHHHHhh
Q 000406 1530 EYGSHETLLAS 1540 (1560)
Q Consensus 1530 E~Gt~~eLl~~ 1540 (1560)
+.|+++++.+.
T Consensus 227 ~~g~~~~~~~~ 237 (252)
T TIGR03005 227 EQGKPDEIFRQ 237 (252)
T ss_pred EeCCHHHHhcC
Confidence 99999999863
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=382.48 Aligned_cols=216 Identities=31% Similarity=0.456 Sum_probs=182.1
Q ss_pred EEEEEEEEEcCCCC--CccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCC----CCHHH
Q 000406 1314 IELKMVTFTYPSRP--EVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLRE----INVKW 1387 (1560)
Q Consensus 1314 I~~~nVsf~Y~~~~--~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~----i~l~~ 1387 (1560)
|+++||+++|+... ..++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||+++.. .+...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999996421 1359999999999999999999999999999999999999999999999999863 34567
Q ss_pred HhhceEEEcCCC--CCCCccHHHHHhcCCC--CCCHHHH----HHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHH
Q 000406 1388 LRKQTALVGQEP--ALFAGTIRDNIALGNP--KASWAEI----EEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQ 1459 (1560)
Q Consensus 1388 LR~~I~~VpQdp--~LF~gTIreNL~~g~~--~~sd~eI----~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQ 1459 (1560)
+|+.|+||||+| .+|+.|++|||.++.. ..+.++. .++++.+++.+ .........|||||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~----------~~~~~~~~~LSgGq~q 152 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPE----------ELLARSPFELSGGQMR 152 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCCh----------hhhhCCcccCCHHHHH
Confidence 888999999998 6888999999987521 2233333 33333333321 1123445689999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHH
Q 000406 1460 RIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSK--RATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHET 1536 (1560)
Q Consensus 1460 RLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~--~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~e 1536 (1560)
|++|||||+.+|+||||||||++||+.+...+.+.|+++.+ +.|||+|||+++.+.. ||||++|++|+|++.|++++
T Consensus 153 rv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~ 232 (290)
T PRK13634 153 RVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPRE 232 (290)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999998753 7899999999999865 99999999999999999999
Q ss_pred HHh
Q 000406 1537 LLA 1539 (1560)
Q Consensus 1537 Ll~ 1539 (1560)
+.+
T Consensus 233 ~~~ 235 (290)
T PRK13634 233 IFA 235 (290)
T ss_pred Hhc
Confidence 875
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-40 Score=382.96 Aligned_cols=220 Identities=29% Similarity=0.514 Sum_probs=184.7
Q ss_pred cEEEEEEEEEcCCCC--CccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCcc--HHHH
Q 000406 672 KIEFKGVTFAYPSRP--ETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQ--VKWL 747 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~~--~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~--~~~l 747 (1560)
.|+++||+++|+... ..++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+ ...+
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 388999999997421 136999999999999999999999999999999999999999999999999997643 3467
Q ss_pred hccEEEEecCC--cCccccHHHHHhcCCCC--CCHHHHHHHHHHhhhHHHHHhCCCCCC--cccCCCCCCCChHHHHHHH
Q 000406 748 RTQIGMVGQEP--ILFATSILENVLMGKEN--ATMKEAVAACKAASAHSFISELPLGYD--TQVGDRGTQLSGGQKQRIA 821 (1560)
Q Consensus 748 r~~i~~v~Q~~--~lf~~Tv~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~gl~--t~~~~~g~~LSgGQrQRia 821 (1560)
+++|+||||+| .+|+.||+|||.++... .+.++..+.+ .+.++.+ |+. +..+..+.+||||||||++
T Consensus 82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~l~~~--gL~~~~~~~~~~~~LSgGq~qrv~ 154 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRV-----KRAMNIV--GLDYEDYKDKSPFELSGGQKRRVA 154 (287)
T ss_pred hhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHH-----HHHHHHc--CCCchhhccCCcccCCHHHHHHHH
Confidence 78999999998 57788999999876321 2222222211 2233333 443 4567778899999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhHhh
Q 000406 822 LARAMIKDPRILLLDEPTSALDSESESIVQQAIDKIS--VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLE 898 (1560)
Q Consensus 822 lARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l~~ 898 (1560)
|||||+.+|+||||||||++||+.+...+.+.|+++. .|+|||+|||+++.+.. ||||++|++|++++.|+++++.+
T Consensus 155 iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13637 155 IAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFK 234 (287)
T ss_pred HHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999999874 38999999999999864 99999999999999999998865
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=377.57 Aligned_cols=219 Identities=32% Similarity=0.515 Sum_probs=186.4
Q ss_pred ccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccC-----CCccEEEECCEecCC--CC
Q 000406 1312 LGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYD-----PNQGKVMIEGVDLRE--IN 1384 (1560)
Q Consensus 1312 ~~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~-----p~~G~I~IdGvdi~~--i~ 1384 (1560)
..|+++||+++|+. ..+|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||.++.. .+
T Consensus 12 ~~l~i~nl~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 12 IIISLQNVTISYGT---FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred ceEEEEeEEEEECC---EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 46999999999963 359999999999999999999999999999999999987 689999999999863 46
Q ss_pred HHHHhhceEEEcCCCCCCCccHHHHHhcCCCC--CC---HHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHH
Q 000406 1385 VKWLRKQTALVGQEPALFAGTIRDNIALGNPK--AS---WAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQ 1459 (1560)
Q Consensus 1385 l~~LR~~I~~VpQdp~LF~gTIreNL~~g~~~--~s---d~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQ 1459 (1560)
...+|+.++||||++.+|..|++|||.++... .. ++++.++++.+++.. +++........+|||||||
T Consensus 89 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS~G~~q 161 (269)
T PRK14259 89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWD-------ECKDKLNESGYSLSGGQQQ 161 (269)
T ss_pred HHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcc-------hhhhhhCCCcccCCHHHHH
Confidence 67788999999999999999999999875321 11 234455555554432 2223344455689999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHHHhh-cCEEEEEeC-----------CE
Q 000406 1460 RIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIRE-ANMIAVVRD-----------GA 1527 (1560)
Q Consensus 1460 RLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlsti~~-aDrIlVLd~-----------G~ 1527 (1560)
|++|||||+++|+||||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++ |+
T Consensus 162 rl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~ 241 (269)
T PRK14259 162 RLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGY 241 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccce
Confidence 999999999999999999999999999999999999988777899999999999865 999999996 67
Q ss_pred EEEecCHHHHHhh
Q 000406 1528 VVEYGSHETLLAS 1540 (1560)
Q Consensus 1528 IvE~Gt~~eLl~~ 1540 (1560)
++|.|+++++++.
T Consensus 242 ~~~~~~~~~~~~~ 254 (269)
T PRK14259 242 LVEFNETKKIFNS 254 (269)
T ss_pred EEEeCCHHHHHhC
Confidence 9999999999863
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-40 Score=373.10 Aligned_cols=210 Identities=27% Similarity=0.401 Sum_probs=177.6
Q ss_pred cEEEEEEEEEcCCCC-CccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHH---H
Q 000406 1313 GIELKMVTFTYPSRP-EVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKW---L 1388 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~~-~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~---L 1388 (1560)
-++++||+++|+.+. ..++|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++..++... +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 389999999997432 146999999999999999999999999999999999999999999999999999887654 3
Q ss_pred h-hceEEEcCCCCCCCc-cHHHHHhcCCC--CCCH----HHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHH
Q 000406 1389 R-KQTALVGQEPALFAG-TIRDNIALGNP--KASW----AEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQR 1460 (1560)
Q Consensus 1389 R-~~I~~VpQdp~LF~g-TIreNL~~g~~--~~sd----~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQR 1460 (1560)
| +.++|+||++.+|+. |++||+.++.. .... +++.++++..+ ++........+||||||||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~g-----------l~~~~~~~~~~LSgG~~qr 153 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVG-----------LEHRANHRPSELSGGERQR 153 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC-----------CchhhhCChhhCCHHHHHH
Confidence 3 679999999998875 99999986311 1122 23444444443 3333444556899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc--CCceEEEEecChHHHhhcCEEEEEeCCEEEEecC
Q 000406 1461 IAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVS--KRATTIVVAHRLSTIREANMIAVVRDGAVVEYGS 1533 (1560)
Q Consensus 1461 LaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~--~~~TvI~IAHRlsti~~aDrIlVLd~G~IvE~Gt 1533 (1560)
++|||||+.+|+||||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+..+|++++|++|+|++.|+
T Consensus 154 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 154 VAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 999999999999999999999999999999999999874 4789999999999999999999999999998775
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-40 Score=376.89 Aligned_cols=217 Identities=29% Similarity=0.466 Sum_probs=185.9
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCC-----CccEEEECCEecCCCCHHH
Q 000406 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDP-----NQGKVMIEGVDLREINVKW 1387 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p-----~~G~I~IdGvdi~~i~l~~ 1387 (1560)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||.++...+...
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 79 (250)
T PRK14247 3 KIEIRDLKVSFGQ---VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE 79 (250)
T ss_pred eEEEEeeEEEECC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHH
Confidence 3899999999963 3599999999999999999999999999999999999974 6999999999998888888
Q ss_pred HhhceEEEcCCCCCC-CccHHHHHhcCCC--C--CC----HHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHH
Q 000406 1388 LRKQTALVGQEPALF-AGTIRDNIALGNP--K--AS----WAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQK 1458 (1560)
Q Consensus 1388 LR~~I~~VpQdp~LF-~gTIreNL~~g~~--~--~s----d~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQr 1458 (1560)
+|+.|+|+||++.+| ..|++||+.++.. . .. .+++.++++.+++.+.+. ..++ ....+||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---~~~~----~~~~~LSgG~~ 152 (250)
T PRK14247 80 LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVK---DRLD----APAGKLSGGQQ 152 (250)
T ss_pred HhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchh---hhhc----CCcccCCHHHH
Confidence 999999999999755 6799999986421 0 11 234556666665543221 1233 33457999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHH
Q 000406 1459 QRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETL 1537 (1560)
Q Consensus 1459 QRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eL 1537 (1560)
||++|||||+++|+||||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14247 153 QRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREV 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHH
Confidence 9999999999999999999999999999999999999998778999999999999864 999999999999999999999
Q ss_pred Hh
Q 000406 1538 LA 1539 (1560)
Q Consensus 1538 l~ 1539 (1560)
.+
T Consensus 233 ~~ 234 (250)
T PRK14247 233 FT 234 (250)
T ss_pred Hc
Confidence 86
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-40 Score=376.06 Aligned_cols=221 Identities=30% Similarity=0.518 Sum_probs=185.7
Q ss_pred EEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHH-HhccE
Q 000406 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKW-LRTQI 751 (1560)
Q Consensus 673 i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~-lr~~i 751 (1560)
|+++|++++|+. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .+..+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (236)
T cd03219 1 LEVRGLTKRFGG---LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77 (236)
T ss_pred CeeeeeEEEECC---EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCE
Confidence 468999999963 45899999999999999999999999999999999999999999999999998776554 35679
Q ss_pred EEEecCCcCccc-cHHHHHhcCCCCCCHHHH-------HHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHH
Q 000406 752 GMVGQEPILFAT-SILENVLMGKENATMKEA-------VAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALA 823 (1560)
Q Consensus 752 ~~v~Q~~~lf~~-Tv~eNi~~g~~~~~~~~~-------~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialA 823 (1560)
+||+|++.+|++ ||+||+.++........+ ........+.+.++.+ |++...+....+||||||||++||
T Consensus 78 ~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la 155 (236)
T cd03219 78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERV--GLADLADRPAGELSYGQQRRLEIA 155 (236)
T ss_pred EEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHc--CccchhhCChhhCCHHHHHHHHHH
Confidence 999999999986 999999876422110000 0001112234455555 666667788889999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhHhh
Q 000406 824 RAMIKDPRILLLDEPTSALDSESESIVQQAIDKIS-VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLE 898 (1560)
Q Consensus 824 RAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l~~ 898 (1560)
|||+.+|++|||||||++||+.+++.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 156 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 232 (236)
T cd03219 156 RALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRN 232 (236)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhcc
Confidence 99999999999999999999999999999998874 68999999999999866 99999999999999999888754
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-40 Score=382.63 Aligned_cols=221 Identities=32% Similarity=0.483 Sum_probs=186.2
Q ss_pred cEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHHHhccE
Q 000406 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQI 751 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 751 (1560)
.|+++||+++|+.....++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48999999999743224589999999999999999999999999999999999999999999999999877777788899
Q ss_pred EEEecCCc--CccccHHHHHhcCCCC--CCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHHhc
Q 000406 752 GMVGQEPI--LFATSILENVLMGKEN--ATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMI 827 (1560)
Q Consensus 752 ~~v~Q~~~--lf~~Tv~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARAl~ 827 (1560)
+||+|+|. ++..||+|||.++... .+.++..+. +.+.++.+ |++......+.+||||||||++|||||+
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~LSgGq~qrv~lAral~ 156 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKER-----VNEALELV--GMQDFKEREPARLSGGQKQRVAIAGAVA 156 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHH-----HHHHHHHC--CCHhHhhCCcccCCHHHHHHHHHHHHHH
Confidence 99999984 4567999999987422 122221111 11223333 4555556667899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCccccccCCEEEEEeCCeEEEecChhhHhhh
Q 000406 828 KDPRILLLDEPTSALDSESESIVQQAIDKIS--VGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLER 899 (1560)
Q Consensus 828 ~~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~~D~i~vl~~G~iv~~G~~~~l~~~ 899 (1560)
.+|+||||||||++||+.+.+.+.+.|+++. .|+|+|+|||+++.+..||+|++|++|++++.|+++++...
T Consensus 157 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 157 MRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 9999999999999999999999999999874 38999999999999877999999999999999999887654
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=375.98 Aligned_cols=218 Identities=27% Similarity=0.437 Sum_probs=183.7
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccC--C---CccEEEECCEecCCC--CH
Q 000406 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYD--P---NQGKVMIEGVDLREI--NV 1385 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~--p---~~G~I~IdGvdi~~i--~l 1385 (1560)
-++++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|+|+++ | ++|+|.++|.++... +.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14239 5 ILQVSDLSVYYNK---KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81 (252)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccch
Confidence 4899999999963 359999999999999999999999999999999999954 6 499999999998653 34
Q ss_pred HHHhhceEEEcCCCCCCCccHHHHHhcCC---CCCC----HHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHH
Q 000406 1386 KWLRKQTALVGQEPALFAGTIRDNIALGN---PKAS----WAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQK 1458 (1560)
Q Consensus 1386 ~~LR~~I~~VpQdp~LF~gTIreNL~~g~---~~~s----d~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQr 1458 (1560)
..+|+.++||||++.+|+.|++||+.++. +... ++++.++++.+++.+.+ .+.......+||||||
T Consensus 82 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~~ 154 (252)
T PRK14239 82 VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEV-------KDRLHDSALGLSGGQQ 154 (252)
T ss_pred HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhH-------HHHHhcCcccCCHHHH
Confidence 56788999999999999999999998642 1111 22344445555443222 2234455668999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHH
Q 000406 1459 QRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETL 1537 (1560)
Q Consensus 1459 QRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eL 1537 (1560)
||++|||||+++|+||||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 234 (252)
T PRK14239 155 QRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQM 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988777899999999998865 999999999999999999999
Q ss_pred Hhh
Q 000406 1538 LAS 1540 (1560)
Q Consensus 1538 l~~ 1540 (1560)
+++
T Consensus 235 ~~~ 237 (252)
T PRK14239 235 FMN 237 (252)
T ss_pred HhC
Confidence 863
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=378.08 Aligned_cols=218 Identities=29% Similarity=0.463 Sum_probs=187.1
Q ss_pred ccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccC-----CCccEEEECCEecCC--CC
Q 000406 1312 LGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYD-----PNQGKVMIEGVDLRE--IN 1384 (1560)
Q Consensus 1312 ~~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~-----p~~G~I~IdGvdi~~--i~ 1384 (1560)
..|+++||+++|+. +++|+|+||+|++||.+||+|+||||||||+++|+|+++ |++|+|.+||.++.. .+
T Consensus 19 ~~l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 95 (267)
T PRK14237 19 IALSTKDLHVYYGK---KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN 95 (267)
T ss_pred eEEEEeeEEEEECC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCC
Confidence 35999999999953 469999999999999999999999999999999999997 589999999999864 34
Q ss_pred HHHHhhceEEEcCCCCCCCccHHHHHhcCCC--C-CC----HHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHH
Q 000406 1385 VKWLRKQTALVGQEPALFAGTIRDNIALGNP--K-AS----WAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQ 1457 (1560)
Q Consensus 1385 l~~LR~~I~~VpQdp~LF~gTIreNL~~g~~--~-~s----d~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQ 1457 (1560)
...+|+.++||||++.+|.+|++|||.++.. . .+ ++++.++++..++.+.+ +..+...+..|||||
T Consensus 96 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i-------~~~~~~~~~~LS~G~ 168 (267)
T PRK14237 96 VYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQV-------KDDLHKSALTLSGGQ 168 (267)
T ss_pred hHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchh-------hhhhcCCcccCCHHH
Confidence 5677899999999999999999999987521 1 11 23344555555554333 233455667899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHH
Q 000406 1458 KQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHET 1536 (1560)
Q Consensus 1458 rQRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~e 1536 (1560)
|||+||||||+++|+||||||||++||+.+...+.+.|+++.++.|+|+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 169 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 248 (267)
T PRK14237 169 QQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRN 248 (267)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999998777899999999999865 99999999999999999999
Q ss_pred HHh
Q 000406 1537 LLA 1539 (1560)
Q Consensus 1537 Ll~ 1539 (1560)
+.+
T Consensus 249 ~~~ 251 (267)
T PRK14237 249 IFT 251 (267)
T ss_pred Hhc
Confidence 986
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-40 Score=393.88 Aligned_cols=212 Identities=29% Similarity=0.432 Sum_probs=183.1
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhhce
Q 000406 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQT 1392 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~~I 1392 (1560)
.|+++||+++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+.. ++.|
T Consensus 3 ~l~i~~l~~~~~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~--~~~i 77 (369)
T PRK11000 3 SVTLRNVTKAYGD---VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA--ERGV 77 (369)
T ss_pred EEEEEEEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHh--HCCE
Confidence 3899999999963 3599999999999999999999999999999999999999999999999999877653 5789
Q ss_pred EEEcCCCCCCCc-cHHHHHhcCCC--CCCH----HHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 000406 1393 ALVGQEPALFAG-TIRDNIALGNP--KASW----AEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIAR 1465 (1560)
Q Consensus 1393 ~~VpQdp~LF~g-TIreNL~~g~~--~~sd----~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLAR 1465 (1560)
+||||++.+|.. |++|||.++.. ..+. +++.++++..++.++.. ....+||||||||++|||
T Consensus 78 ~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~-----------~~~~~LSgGq~QRvaLAr 146 (369)
T PRK11000 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLD-----------RKPKALSGGQRQRVAIGR 146 (369)
T ss_pred EEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhc-----------CChhhCCHHHHHHHHHHH
Confidence 999999999975 99999987532 1222 34555566555544433 333579999999999999
Q ss_pred HHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHHHhh
Q 000406 1466 AILKGSRVLLLDEASSALDLESEKHVQDALRKVSK--RATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLAS 1540 (1560)
Q Consensus 1466 ALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~--~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eLl~~ 1540 (1560)
||+++|+|||||||||+||+.+.+.+.+.|++..+ +.|+|+|||+++.+.. ||+|++|++|+|++.|++++++..
T Consensus 147 aL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~ 224 (369)
T PRK11000 147 TLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 224 (369)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999999999999998753 7899999999998865 999999999999999999999873
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-40 Score=391.81 Aligned_cols=213 Identities=32% Similarity=0.467 Sum_probs=184.4
Q ss_pred ccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCc--cEEEECCEecCCCCHHHHh
Q 000406 1312 LGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQ--GKVMIEGVDLREINVKWLR 1389 (1560)
Q Consensus 1312 ~~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~--G~I~IdGvdi~~i~l~~LR 1389 (1560)
+.|+++||+++|+. ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.+||.++...+. .+
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~ 78 (362)
T TIGR03258 4 GGIRIDHLRVAYGA---NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HK 78 (362)
T ss_pred eEEEEEEEEEEECC---eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HH
Confidence 46999999999963 359999999999999999999999999999999999999999 999999999987765 35
Q ss_pred hceEEEcCCCCCCCc-cHHHHHhcCCC--CCCHH----HHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHH
Q 000406 1390 KQTALVGQEPALFAG-TIRDNIALGNP--KASWA----EIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIA 1462 (1560)
Q Consensus 1390 ~~I~~VpQdp~LF~g-TIreNL~~g~~--~~sd~----eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLa 1462 (1560)
+.|+||+|++.||.. |++|||.++.. ..+.+ ++.++++..++.++..+ ...+||||||||+|
T Consensus 79 r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~-----------~~~~LSgGq~QRva 147 (362)
T TIGR03258 79 RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAH-----------LPAQLSGGMQQRIA 147 (362)
T ss_pred CCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhC-----------ChhhCCHHHHHHHH
Confidence 789999999999975 99999987531 22322 34455555555444333 34579999999999
Q ss_pred HHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC---CceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHHH
Q 000406 1463 IARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSK---RATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLL 1538 (1560)
Q Consensus 1463 LARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~---~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eLl 1538 (1560)
|||||+++|+|||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+.. ||+|+||++|++++.|+++++.
T Consensus 148 LARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~ 227 (362)
T TIGR03258 148 IARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALY 227 (362)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999998754 6899999999999865 9999999999999999999999
Q ss_pred hh
Q 000406 1539 AS 1540 (1560)
Q Consensus 1539 ~~ 1540 (1560)
++
T Consensus 228 ~~ 229 (362)
T TIGR03258 228 DA 229 (362)
T ss_pred hC
Confidence 74
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=377.14 Aligned_cols=218 Identities=26% Similarity=0.423 Sum_probs=184.6
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccC--C---CccEEEECCEecCC--CCH
Q 000406 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYD--P---NQGKVMIEGVDLRE--INV 1385 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~--p---~~G~I~IdGvdi~~--i~l 1385 (1560)
-|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|+|+++ | ++|+|.+||.++.. .+.
T Consensus 12 ~l~i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~ 88 (259)
T PRK14274 12 VYQINGMNLWYGQ---HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDL 88 (259)
T ss_pred eEEEeeEEEEECC---eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCH
Confidence 4899999999963 359999999999999999999999999999999999997 3 58999999999864 445
Q ss_pred HHHhhceEEEcCCCCCCCccHHHHHhcCCC--C-CCHH----HHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHH
Q 000406 1386 KWLRKQTALVGQEPALFAGTIRDNIALGNP--K-ASWA----EIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQK 1458 (1560)
Q Consensus 1386 ~~LR~~I~~VpQdp~LF~gTIreNL~~g~~--~-~sd~----eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQr 1458 (1560)
..+|+.++|+||++.+|.+|++||+.++.. . ..++ ++.++++..++.+.+. ........+||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~l~~~~~~LS~Gq~ 161 (259)
T PRK14274 89 VELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVK-------DRLHTQALSLSGGQQ 161 (259)
T ss_pred HHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hhhhCCcccCCHHHH
Confidence 678899999999999999999999986421 1 1222 2334444444433321 223445668999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHH
Q 000406 1459 QRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETL 1537 (1560)
Q Consensus 1459 QRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eL 1537 (1560)
||++|||||+++|+||||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||||++|++|+|++.|+++++
T Consensus 162 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 241 (259)
T PRK14274 162 QRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKM 241 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999998778899999999999865 999999999999999999999
Q ss_pred Hhh
Q 000406 1538 LAS 1540 (1560)
Q Consensus 1538 l~~ 1540 (1560)
+++
T Consensus 242 ~~~ 244 (259)
T PRK14274 242 FSN 244 (259)
T ss_pred hhC
Confidence 864
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-40 Score=372.64 Aligned_cols=216 Identities=24% Similarity=0.423 Sum_probs=182.7
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHH-hhce
Q 000406 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWL-RKQT 1392 (1560)
Q Consensus 1314 I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~L-R~~I 1392 (1560)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+...+ |+.+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 77 (232)
T cd03218 1 LRAENLSKRYGK---RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI 77 (232)
T ss_pred CeEEEEEEEeCC---EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE
Confidence 578999999963 359999999999999999999999999999999999999999999999999988776554 5679
Q ss_pred EEEcCCCCCCCc-cHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcc
Q 000406 1393 ALVGQEPALFAG-TIRDNIALGNP--KASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILK 1469 (1560)
Q Consensus 1393 ~~VpQdp~LF~g-TIreNL~~g~~--~~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLARALLr 1469 (1560)
+|+||++.+|.+ |++||+.++.+ ....++.. ..+.+++..+ |++........+||||||||++|||||+.
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~ 150 (232)
T cd03218 78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKERE-----EKLEELLEEF--HITHLRKSKASSLSGGERRRVEIARALAT 150 (232)
T ss_pred EEecCCccccccCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 999999999987 99999986432 11222211 1223334443 45555556667899999999999999999
Q ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHHHh
Q 000406 1470 GSRVLLLDEASSALDLESEKHVQDALRKVS-KRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLA 1539 (1560)
Q Consensus 1470 ~p~ILILDEaTSaLD~~Te~~I~~~L~~~~-~~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eLl~ 1539 (1560)
+|++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 151 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 151 NPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 999999999999999999999999998875 47899999999987765 99999999999999999999875
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=376.96 Aligned_cols=218 Identities=31% Similarity=0.477 Sum_probs=183.9
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCC-----CccEEEECCEecCCCC--H
Q 000406 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDP-----NQGKVMIEGVDLREIN--V 1385 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p-----~~G~I~IdGvdi~~i~--l 1385 (1560)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||.++...+ .
T Consensus 12 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 88 (258)
T PRK14268 12 QIKVENLNLWYGE---KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDV 88 (258)
T ss_pred eEEEeeeEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchH
Confidence 5999999999963 3599999999999999999999999999999999999985 7999999999986532 4
Q ss_pred HHHhhceEEEcCCCCCCCccHHHHHhcCCC--CCCHH----HHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHH
Q 000406 1386 KWLRKQTALVGQEPALFAGTIRDNIALGNP--KASWA----EIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQ 1459 (1560)
Q Consensus 1386 ~~LR~~I~~VpQdp~LF~gTIreNL~~g~~--~~sd~----eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQ 1459 (1560)
..+|+.++|+||++.+|+.|++||+.++.. ..+.+ ++.++++.+++.+.+ ..........|||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgG~~q 161 (258)
T PRK14268 89 VELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDET-------SDRLKSPALSLSGGQQQ 161 (258)
T ss_pred HHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcch-------hhhhcCChhhCCHHHHH
Confidence 567889999999999999999999986421 12222 244455554443211 12223445679999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHHH
Q 000406 1460 RIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLL 1538 (1560)
Q Consensus 1460 RLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eLl 1538 (1560)
|++|||||+.+|+||||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 162 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 241 (258)
T PRK14268 162 RLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIF 241 (258)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999988777999999999999866 9999999999999999999998
Q ss_pred hh
Q 000406 1539 AS 1540 (1560)
Q Consensus 1539 ~~ 1540 (1560)
++
T Consensus 242 ~~ 243 (258)
T PRK14268 242 HN 243 (258)
T ss_pred cC
Confidence 63
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=372.79 Aligned_cols=217 Identities=29% Similarity=0.488 Sum_probs=182.2
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCC--HHHHhhc
Q 000406 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREIN--VKWLRKQ 1391 (1560)
Q Consensus 1314 I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~--l~~LR~~ 1391 (1560)
++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+ ...+|+.
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 2 IEFKNVSKHFGP---TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred EEEEeEEEEECC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence 689999999963 35999999999999999999999999999999999999999999999999998643 4567889
Q ss_pred eEEEcCCCCCCC-ccHHHHHhcCCC---CCCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHH
Q 000406 1392 TALVGQEPALFA-GTIRDNIALGNP---KASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAI 1467 (1560)
Q Consensus 1392 I~~VpQdp~LF~-gTIreNL~~g~~---~~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLARAL 1467 (1560)
++|+||++.+|. .|+++|+.++.. ..+.++..+ .+.+.+..+ |++.........||||||||++|||||
T Consensus 79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la~al 151 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEK-----QARELLAKV--GLAERAHHYPSELSGGQQQRVAIARAL 151 (240)
T ss_pred eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHH-----HHHHHHHHc--CChHHHhcChhhcCHHHHHHHHHHHHH
Confidence 999999998886 599999986421 122222211 122333333 444444455568999999999999999
Q ss_pred ccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHHHhh
Q 000406 1468 LKGSRVLLLDEASSALDLESEKHVQDALRKVS-KRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLAS 1540 (1560)
Q Consensus 1468 Lr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~-~~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eLl~~ 1540 (1560)
+++|+||||||||++||+.+...+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.|++++++++
T Consensus 152 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (240)
T PRK09493 152 AVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226 (240)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence 99999999999999999999999999999864 47899999999999865 999999999999999999998863
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=378.14 Aligned_cols=218 Identities=30% Similarity=0.481 Sum_probs=183.4
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccC-----CCccEEEECCEecCC--CCH
Q 000406 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYD-----PNQGKVMIEGVDLRE--INV 1385 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~-----p~~G~I~IdGvdi~~--i~l 1385 (1560)
-|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 21 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 97 (268)
T PRK14248 21 ILEVKDLSIYYGE---KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINV 97 (268)
T ss_pred eEEEEEEEEEeCC---ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccH
Confidence 5999999999963 359999999999999999999999999999999999865 789999999999865 344
Q ss_pred HHHhhceEEEcCCCCCCCccHHHHHhcCCC---CCC----HHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHH
Q 000406 1386 KWLRKQTALVGQEPALFAGTIRDNIALGNP---KAS----WAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQK 1458 (1560)
Q Consensus 1386 ~~LR~~I~~VpQdp~LF~gTIreNL~~g~~---~~s----d~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQr 1458 (1560)
..+|+.++|+||++.+|++|++||+.++.. ... ++.+.++++..++.+. +.........+||||||
T Consensus 98 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LSgGq~ 170 (268)
T PRK14248 98 VNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDE-------VKDRLHSSALSLSGGQQ 170 (268)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcc-------hHHHHhcCcccCCHHHH
Confidence 567889999999999999999999986421 101 1234444444443211 11223455668999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHH
Q 000406 1459 QRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETL 1537 (1560)
Q Consensus 1459 QRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eL 1537 (1560)
||++|||||+.+|+||||||||++||+.+...+.+.|++..+++|||++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 171 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 250 (268)
T PRK14248 171 QRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQI 250 (268)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988777899999999998865 999999999999999999999
Q ss_pred Hhh
Q 000406 1538 LAS 1540 (1560)
Q Consensus 1538 l~~ 1540 (1560)
..+
T Consensus 251 ~~~ 253 (268)
T PRK14248 251 FTS 253 (268)
T ss_pred HhC
Confidence 863
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-40 Score=393.26 Aligned_cols=216 Identities=29% Similarity=0.490 Sum_probs=187.1
Q ss_pred cEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHHHhccE
Q 000406 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQI 751 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 751 (1560)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.+||+++.+.++. ++.|
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~i 78 (353)
T TIGR03265 4 YLSIDNIRKRFGA---FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDY 78 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 4899999999973 4589999999999999999999999999999999999999999999999999877654 5689
Q ss_pred EEEecCCcCccc-cHHHHHhcCCCCC--CHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHHhcc
Q 000406 752 GMVGQEPILFAT-SILENVLMGKENA--TMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIK 828 (1560)
Q Consensus 752 ~~v~Q~~~lf~~-Tv~eNi~~g~~~~--~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARAl~~ 828 (1560)
+||+|++.+|+. ||+|||.|+.... +..+.. ..+++.++.+ |++....+.+.+||||||||++|||||++
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~-----~~~~~~l~~l--~L~~~~~~~~~~LSgGq~QRvaLARaL~~ 151 (353)
T TIGR03265 79 GIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVA-----ERVAELLDLV--GLPGSERKYPGQLSGGQQQRVALARALAT 151 (353)
T ss_pred EEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CCCchhhCChhhCCHHHHHHHHHHHHHhc
Confidence 999999999975 9999999874321 122211 1223445554 66667778889999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhHhhh
Q 000406 829 DPRILLLDEPTSALDSESESIVQQAIDKIS--VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLER 899 (1560)
Q Consensus 829 ~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l~~~ 899 (1560)
+|++||||||||+||+.++..+.+.|+++. .+.|+|+|||+++++.. ||+|++|++|++++.|+++++..+
T Consensus 152 ~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~ 225 (353)
T TIGR03265 152 SPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRH 225 (353)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999999998874 38999999999999865 999999999999999999999864
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-40 Score=368.87 Aligned_cols=209 Identities=22% Similarity=0.408 Sum_probs=178.9
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhhceE
Q 000406 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTA 1393 (1560)
Q Consensus 1314 I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~~I~ 1393 (1560)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++... ...+|++++
T Consensus 1 i~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 76 (220)
T cd03265 1 IEVENLVKKYGD---FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIG 76 (220)
T ss_pred CEEEEEEEEECC---EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEE
Confidence 579999999963 3599999999999999999999999999999999999999999999999998763 356788999
Q ss_pred EEcCCCCCCCc-cHHHHHhcCCC--CCC----HHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 000406 1394 LVGQEPALFAG-TIRDNIALGNP--KAS----WAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARA 1466 (1560)
Q Consensus 1394 ~VpQdp~LF~g-TIreNL~~g~~--~~s----d~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLARA 1466 (1560)
|+||++.+|.. |+++|+.++.. ..+ ++++.++++..++.++... + ...||||||||++||||
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~----~~~LS~G~~qr~~la~a 145 (220)
T cd03265 77 IVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADR-------L----VKTYSGGMRRRLEIARS 145 (220)
T ss_pred EecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhC-------C----hhhCCHHHHHHHHHHHH
Confidence 99999998875 99999976310 111 2345566666666544332 2 34799999999999999
Q ss_pred HccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHH
Q 000406 1467 ILKGSRVLLLDEASSALDLESEKHVQDALRKVSK--RATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETL 1537 (1560)
Q Consensus 1467 LLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~--~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eL 1537 (1560)
++.+|++|||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|+|++.|+++++
T Consensus 146 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 146 LVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred HhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 9999999999999999999999999999998653 6899999999999876 999999999999999998774
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=372.24 Aligned_cols=227 Identities=30% Similarity=0.466 Sum_probs=185.3
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCC--------H
Q 000406 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREIN--------V 1385 (1560)
Q Consensus 1314 I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~--------l 1385 (1560)
++++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+ .
T Consensus 4 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (250)
T PRK11264 4 IEVKNLVKKFHG---QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLI 80 (250)
T ss_pred EEEeceEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHH
Confidence 899999999963 35999999999999999999999999999999999999999999999999987542 3
Q ss_pred HHHhhceEEEcCCCCCCC-ccHHHHHhcCC---CCCCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 000406 1386 KWLRKQTALVGQEPALFA-GTIRDNIALGN---PKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRI 1461 (1560)
Q Consensus 1386 ~~LR~~I~~VpQdp~LF~-gTIreNL~~g~---~~~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRL 1461 (1560)
..+|+.++||||++.+|. .|++||+.++. .....++..+. +.+.+..+ |++........+||||||||+
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~l~~~--gl~~~~~~~~~~LS~Gq~qrv 153 (250)
T PRK11264 81 RQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATAR-----ARELLAKV--GLAGKETSYPRRLSGGQQQRV 153 (250)
T ss_pred HHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHHc--CCcchhhCChhhCChHHHHHH
Confidence 567889999999999886 69999997631 11122222111 22333333 344334455678999999999
Q ss_pred HHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC-CceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHHHh
Q 000406 1462 AIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSK-RATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLA 1539 (1560)
Q Consensus 1462 aLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~-~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eLl~ 1539 (1560)
+|||||+.+|+||||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 154 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 233 (250)
T PRK11264 154 AIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFA 233 (250)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999999998753 7899999999999976 99999999999999999999986
Q ss_pred hccChHHHHHH
Q 000406 1540 SHLNGVYASLV 1550 (1560)
Q Consensus 1540 ~~~~g~y~~l~ 1550 (1560)
.......+.++
T Consensus 234 ~~~~~~~~~~~ 244 (250)
T PRK11264 234 DPQQPRTRQFL 244 (250)
T ss_pred CCCCHHHHHHH
Confidence 32233334444
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-40 Score=377.66 Aligned_cols=217 Identities=30% Similarity=0.482 Sum_probs=183.9
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccC-----CCccEEEECCEecCCCC--HH
Q 000406 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYD-----PNQGKVMIEGVDLREIN--VK 1386 (1560)
Q Consensus 1314 I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~-----p~~G~I~IdGvdi~~i~--l~ 1386 (1560)
-+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.++...+ ..
T Consensus 6 ~~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 82 (251)
T PRK14244 6 ASVKNLNLWYGS---KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV 82 (251)
T ss_pred EEeeeEEEEECC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence 579999999963 469999999999999999999999999999999999986 47999999999987653 34
Q ss_pred HHhhceEEEcCCCCCCCccHHHHHhcCCC--CC------CHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHH
Q 000406 1387 WLRKQTALVGQEPALFAGTIRDNIALGNP--KA------SWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQK 1458 (1560)
Q Consensus 1387 ~LR~~I~~VpQdp~LF~gTIreNL~~g~~--~~------sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQr 1458 (1560)
.+|+.++||||++.+|++|++||+.++.. .. .++++.++++..++.+.+ .+.+...+.+||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~ 155 (251)
T PRK14244 83 LLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEEL-------GDRLKDSAFELSGGQQ 155 (251)
T ss_pred HHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchh-------hhHhhcChhhCCHHHH
Confidence 67889999999999999999999986411 11 123344555555543321 2234455668999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHH
Q 000406 1459 QRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETL 1537 (1560)
Q Consensus 1459 QRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eL 1537 (1560)
||++|||||+++|+||||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 235 (251)
T PRK14244 156 QRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEI 235 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999875 999999999999999999999
Q ss_pred Hhh
Q 000406 1538 LAS 1540 (1560)
Q Consensus 1538 l~~ 1540 (1560)
++.
T Consensus 236 ~~~ 238 (251)
T PRK14244 236 FKN 238 (251)
T ss_pred hcC
Confidence 873
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-40 Score=379.68 Aligned_cols=215 Identities=28% Similarity=0.544 Sum_probs=185.5
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhhce
Q 000406 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQT 1392 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~~I 1392 (1560)
.|+++|++++|+.. +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+...+|+.+
T Consensus 7 ~l~~~nl~~~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 7 MIKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred EEEEEeEEEEcCCC-CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 58999999999632 34699999999999999999999999999999999999999999999999999888878889999
Q ss_pred EEEcCCC--CCCCccHHHHHhcCCC--CCCHHH----HHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 000406 1393 ALVGQEP--ALFAGTIRDNIALGNP--KASWAE----IEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIA 1464 (1560)
Q Consensus 1393 ~~VpQdp--~LF~gTIreNL~~g~~--~~sd~e----I~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLA 1464 (1560)
+|+||+| .++..|++|||.++.. ..+.++ +.++++..++.++. .....+||||||||++||
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~la 154 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYL-----------DKEPQNLSGGQKQRVAIA 154 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHh-----------hCCcccCCHHHHHHHHHH
Confidence 9999998 4567899999987421 123332 34445555554443 334468999999999999
Q ss_pred HHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CceEEEEecChHHHhhcCEEEEEeCCEEEEecCHHHHHh
Q 000406 1465 RAILKGSRVLLLDEASSALDLESEKHVQDALRKVSK--RATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETLLA 1539 (1560)
Q Consensus 1465 RALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~--~~TvI~IAHRlsti~~aDrIlVLd~G~IvE~Gt~~eLl~ 1539 (1560)
|||+++|+||||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+..||+|++|++|++++.|+++++.+
T Consensus 155 ral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 231 (271)
T PRK13632 155 SVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILN 231 (271)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhc
Confidence 999999999999999999999999999999998753 489999999999988899999999999999999998875
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-40 Score=368.10 Aligned_cols=207 Identities=24% Similarity=0.421 Sum_probs=175.6
Q ss_pred EEEEEEEEEcCCCCC-ccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhhce
Q 000406 1314 IELKMVTFTYPSRPE-VTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQT 1392 (1560)
Q Consensus 1314 I~~~nVsf~Y~~~~~-~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~~I 1392 (1560)
|+++||+++|+.... .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.. ....+|+++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 689999999974311 159999999999999999999999999999999999999999999999999875 446778899
Q ss_pred EEEcCCCCCCCc-cHHHHHhcCCC--CCC----HHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 000406 1393 ALVGQEPALFAG-TIRDNIALGNP--KAS----WAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIAR 1465 (1560)
Q Consensus 1393 ~~VpQdp~LF~g-TIreNL~~g~~--~~s----d~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLAR 1465 (1560)
+|+||++.+|.+ |++||+.+... ..+ .+++.++++..++.+. ......+||||||||++|||
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~lar 149 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEEL-----------LDRRVGGFSTGMRQKVAIAR 149 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH-----------HhhhhhhcCHHHHHHHHHHH
Confidence 999999999985 99999975321 112 2334455555554433 33445679999999999999
Q ss_pred HHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCceEEEEecChHHHhh-cCEEEEEeCCEEEEec
Q 000406 1466 AILKGSRVLLLDEASSALDLESEKHVQDALRKVS-KRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYG 1532 (1560)
Q Consensus 1466 ALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~-~~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~G 1532 (1560)
||+.+|+||||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 150 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 150 ALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 9999999999999999999999999999999874 47899999999999865 9999999999998865
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=380.64 Aligned_cols=216 Identities=28% Similarity=0.477 Sum_probs=187.2
Q ss_pred cEEEEEEEEEcCCCC---CccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCC-HHHH
Q 000406 1313 GIELKMVTFTYPSRP---EVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREIN-VKWL 1388 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~~---~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~-l~~L 1388 (1560)
-++++||+++|++.. .+++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+ ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 489999999997421 246999999999999999999999999999999999999999999999999997654 4567
Q ss_pred hhceEEEcCCCC--CCCccHHHHHhcCCC--CCC----HHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHH
Q 000406 1389 RKQTALVGQEPA--LFAGTIRDNIALGNP--KAS----WAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQR 1460 (1560)
Q Consensus 1389 R~~I~~VpQdp~--LF~gTIreNL~~g~~--~~s----d~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQR 1460 (1560)
|+.++|+||+|. +|..|+.+|+.++.. ..+ ++++.++++.+++.++....| .+||||||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAP-----------HLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHH
Confidence 899999999984 777799999987521 122 244666677767766554433 4799999999
Q ss_pred HHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc--CCceEEEEecChHHHhhcCEEEEEeCCEEEEecCHHHHH
Q 000406 1461 IAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVS--KRATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETLL 1538 (1560)
Q Consensus 1461 LaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~--~~~TvI~IAHRlsti~~aDrIlVLd~G~IvE~Gt~~eLl 1538 (1560)
++|||||+++|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+..||+|++|++|+|++.|+++++.
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999999874 378999999999999889999999999999999999997
Q ss_pred h
Q 000406 1539 A 1539 (1560)
Q Consensus 1539 ~ 1539 (1560)
.
T Consensus 233 ~ 233 (280)
T PRK13633 233 K 233 (280)
T ss_pred c
Confidence 6
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-40 Score=367.21 Aligned_cols=203 Identities=25% Similarity=0.425 Sum_probs=176.1
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhhceE
Q 000406 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTA 1393 (1560)
Q Consensus 1314 I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~~I~ 1393 (1560)
|+++||+++|+. .++|+|+||+|++| ++||+|+||||||||+++|+|+++|++|+|.++|.++...+ ..+|+.++
T Consensus 1 i~~~~~~~~~~~---~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 75 (211)
T cd03264 1 LQLENLTKRYGK---KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIG 75 (211)
T ss_pred CEEEEEEEEECC---EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheE
Confidence 579999999963 35999999999999 99999999999999999999999999999999999998776 67889999
Q ss_pred EEcCCCCCCCc-cHHHHHhcCC--CCCC----HHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 000406 1394 LVGQEPALFAG-TIRDNIALGN--PKAS----WAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARA 1466 (1560)
Q Consensus 1394 ~VpQdp~LF~g-TIreNL~~g~--~~~s----d~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLARA 1466 (1560)
|+||++.+|.+ |++||+.+.. ...+ .+++.++++..++.++. ++. ..+||||||||++||||
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~----~~~LS~G~~qrv~la~a 144 (211)
T cd03264 76 YLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRA-------KKK----IGSLSGGMRRRVGIAQA 144 (211)
T ss_pred EecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHH-------hCc----hhhCCHHHHHHHHHHHH
Confidence 99999999986 9999997631 0111 23455666666665443 233 34799999999999999
Q ss_pred HccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHHHhh-cCEEEEEeCCEEEEec
Q 000406 1467 ILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYG 1532 (1560)
Q Consensus 1467 LLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~G 1532 (1560)
|+++|+||||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||||++|++|++++.|
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 145 LVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999999988777999999999999875 9999999999999865
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=374.99 Aligned_cols=218 Identities=32% Similarity=0.495 Sum_probs=184.1
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcc---cCC--CccEEEECCEecCCC--CH
Q 000406 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRF---YDP--NQGKVMIEGVDLREI--NV 1385 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl---~~p--~~G~I~IdGvdi~~i--~l 1385 (1560)
.|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|+|+ ++| ++|+|.+||.++... +.
T Consensus 3 ~l~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14245 3 KIDARDVNFWYGD---FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV 79 (250)
T ss_pred EEEEEEEEEEECC---EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccH
Confidence 4899999999963 3599999999999999999999999999999999997 454 589999999998764 34
Q ss_pred HHHhhceEEEcCCCCCCCccHHHHHhcCCC--CC-C----HHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHH
Q 000406 1386 KWLRKQTALVGQEPALFAGTIRDNIALGNP--KA-S----WAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQK 1458 (1560)
Q Consensus 1386 ~~LR~~I~~VpQdp~LF~gTIreNL~~g~~--~~-s----d~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQr 1458 (1560)
..+|+.++||||++.+|..|++||+.++.. .. . +++++++++..++.+++ ++.....+..||||||
T Consensus 80 ~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~~ 152 (250)
T PRK14245 80 DELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEV-------KDKLKESAFALSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcch-------hhhhhCCcccCCHHHH
Confidence 677889999999999999999999986421 11 1 12344455444443222 2334455678999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHH
Q 000406 1459 QRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETL 1537 (1560)
Q Consensus 1459 QRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eL 1537 (1560)
||++|||||+++|+||||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~ 232 (250)
T PRK14245 153 QRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKI 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999998778999999999999865 999999999999999999999
Q ss_pred Hhh
Q 000406 1538 LAS 1540 (1560)
Q Consensus 1538 l~~ 1540 (1560)
.++
T Consensus 233 ~~~ 235 (250)
T PRK14245 233 FTN 235 (250)
T ss_pred hcC
Confidence 863
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=363.01 Aligned_cols=200 Identities=36% Similarity=0.555 Sum_probs=181.4
Q ss_pred EEEEEEEEEcCCCCC--ccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhhc
Q 000406 1314 IELKMVTFTYPSRPE--VTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQ 1391 (1560)
Q Consensus 1314 I~~~nVsf~Y~~~~~--~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~~ 1391 (1560)
|+++||+++|+...+ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+|| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 579999999964311 3699999999999999999999999999999999999999999999999 6
Q ss_pred eEEEcCCCCCCCccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHccCC
Q 000406 1392 TALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGS 1471 (1560)
Q Consensus 1392 I~~VpQdp~LF~gTIreNL~~g~~~~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLARALLr~p 1471 (1560)
|+|+||+|.+|++|++||+.++.. ..++++.++++.+++.+++..+|.|+++.+.+.+..||+|||||++|||||+.+|
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p 146 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKP-FDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDA 146 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCC-cCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999998633 3456778888888999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCcCCCHHHHHHHHH-HHHHhc-CCceEEEEecChHHHhhcCEEEEEeCCE
Q 000406 1472 RVLLLDEASSALDLESEKHVQD-ALRKVS-KRATTIVVAHRLSTIREANMIAVVRDGA 1527 (1560)
Q Consensus 1472 ~ILILDEaTSaLD~~Te~~I~~-~L~~~~-~~~TvI~IAHRlsti~~aDrIlVLd~G~ 1527 (1560)
+|+||||||++||+++.+.+.+ .+++.. +++|||+|||+++.+..||+|++|++|+
T Consensus 147 ~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 147 DIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 9999999999999999988877 456543 4689999999999998899999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-40 Score=366.80 Aligned_cols=199 Identities=28% Similarity=0.533 Sum_probs=172.4
Q ss_pred EEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhhceEE
Q 000406 1315 ELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTAL 1394 (1560)
Q Consensus 1315 ~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~~I~~ 1394 (1560)
+++||+++|+.. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.. ...|++++|
T Consensus 1 ~~~~l~~~~~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~ 75 (205)
T cd03226 1 RIENISFSYKKG--TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGY 75 (205)
T ss_pred CcccEEEEeCCc--CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEE
Confidence 468999999641 359999999999999999999999999999999999999999999999998864 456788999
Q ss_pred EcCCC--CCCCccHHHHHhcCCCCC--CHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHccC
Q 000406 1395 VGQEP--ALFAGTIRDNIALGNPKA--SWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKG 1470 (1560)
Q Consensus 1395 VpQdp--~LF~gTIreNL~~g~~~~--sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLARALLr~ 1470 (1560)
+||++ .+|..|++||+.++.+.. ..+++.++++..++.++....| ..||||||||++|||||+.+
T Consensus 76 ~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral~~~ 144 (205)
T cd03226 76 VMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHP-----------LSLSGGQKQRLAIAAALLSG 144 (205)
T ss_pred EecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCc-----------hhCCHHHHHHHHHHHHHHhC
Confidence 99998 467899999998753221 2346777777777765543333 37999999999999999999
Q ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHh-cCCceEEEEecChHHHhh-cCEEEEEeCCEEE
Q 000406 1471 SRVLLLDEASSALDLESEKHVQDALRKV-SKRATTIVVAHRLSTIRE-ANMIAVVRDGAVV 1529 (1560)
Q Consensus 1471 p~ILILDEaTSaLD~~Te~~I~~~L~~~-~~~~TvI~IAHRlsti~~-aDrIlVLd~G~Iv 1529 (1560)
|++|||||||++||+.+.+.+.+.|++. .+++|+|++||+++.+.. ||+|++|++|+++
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 145 KDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999999999999999987 457899999999999975 9999999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=377.74 Aligned_cols=224 Identities=24% Similarity=0.356 Sum_probs=186.3
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHH---HHh
Q 000406 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVK---WLR 1389 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~---~LR 1389 (1560)
-|+++||+++|+. .++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++..++.. .+|
T Consensus 7 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 83 (269)
T PRK11831 7 LVDMRGVSFTRGN---RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVR 83 (269)
T ss_pred eEEEeCeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHh
Confidence 4899999999963 4599999999999999999999999999999999999999999999999999877643 457
Q ss_pred hceEEEcCCCCCCCc-cHHHHHhcCCC---CCCHH----HHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 000406 1390 KQTALVGQEPALFAG-TIRDNIALGNP---KASWA----EIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRI 1461 (1560)
Q Consensus 1390 ~~I~~VpQdp~LF~g-TIreNL~~g~~---~~sd~----eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRL 1461 (1560)
+.++|+||++.+|.+ |++||+.++.. ..+.+ .+.++++..++.+ ........||||||||+
T Consensus 84 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LSgGq~qrv 152 (269)
T PRK11831 84 KRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRG-----------AAKLMPSELSGGMARRA 152 (269)
T ss_pred hcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChh-----------hhhCChhhCCHHHHHHH
Confidence 889999999999986 99999976311 11221 2333344433332 22333457999999999
Q ss_pred HHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHHH
Q 000406 1462 AIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSK--RATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLL 1538 (1560)
Q Consensus 1462 aLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~--~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eLl 1538 (1560)
+|||||+++|+||||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|++++++
T Consensus 153 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 153 ALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQ 232 (269)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999998743 6899999999999876 9999999999999999999998
Q ss_pred hhccChHHHHHHH
Q 000406 1539 ASHLNGVYASLVR 1551 (1560)
Q Consensus 1539 ~~~~~g~y~~l~~ 1551 (1560)
++ ....+..++.
T Consensus 233 ~~-~~~~~~~~~~ 244 (269)
T PRK11831 233 AN-PDPRVRQFLD 244 (269)
T ss_pred cC-CcHHHHHHHH
Confidence 63 3445555554
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=379.44 Aligned_cols=213 Identities=29% Similarity=0.467 Sum_probs=185.7
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhhceE
Q 000406 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTA 1393 (1560)
Q Consensus 1314 I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~~I~ 1393 (1560)
++++||+++|+.. ..+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+++...+...+++.++
T Consensus 4 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 4 IETRDLCYSYSGS--KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG 81 (277)
T ss_pred EEEEEEEEEeCCC--CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence 7899999999632 35999999999999999999999999999999999999999999999999998878788899999
Q ss_pred EEcCCC--CCCCccHHHHHhcCCC--CCCH----HHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 000406 1394 LVGQEP--ALFAGTIRDNIALGNP--KASW----AEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIAR 1465 (1560)
Q Consensus 1394 ~VpQdp--~LF~gTIreNL~~g~~--~~sd----~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLAR 1465 (1560)
||||++ .+|+.|+++|+.++.. ..+. +.+.++++.+++.++.... ...||||||||++|||
T Consensus 82 ~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~Gq~qrl~lar 150 (277)
T PRK13652 82 LVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRV-----------PHHLSGGEKKRVAIAG 150 (277)
T ss_pred EEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCC-----------cccCCHHHHHHHHHHH
Confidence 999998 4788999999986421 2222 2355666666665544333 3479999999999999
Q ss_pred HHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CceEEEEecChHHHh-hcCEEEEEeCCEEEEecCHHHHHh
Q 000406 1466 AILKGSRVLLLDEASSALDLESEKHVQDALRKVSK--RATTIVVAHRLSTIR-EANMIAVVRDGAVVEYGSHETLLA 1539 (1560)
Q Consensus 1466 ALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~--~~TvI~IAHRlsti~-~aDrIlVLd~G~IvE~Gt~~eLl~ 1539 (1560)
||+.+|+||||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+. .||||++|++|++++.|+++++++
T Consensus 151 aL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 227 (277)
T PRK13652 151 VIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFL 227 (277)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhc
Confidence 99999999999999999999999999999998753 789999999999985 599999999999999999999975
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=383.24 Aligned_cols=216 Identities=25% Similarity=0.415 Sum_probs=181.2
Q ss_pred EEEEEEEEEcCCCC--CccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCC---------
Q 000406 1314 IELKMVTFTYPSRP--EVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLRE--------- 1382 (1560)
Q Consensus 1314 I~~~nVsf~Y~~~~--~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~--------- 1382 (1560)
|+++||+++|+... ..++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++..
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence 88999999997431 1359999999999999999999999999999999999999999999999987632
Q ss_pred ---------------CCHHHHhhceEEEcCCC--CCCCccHHHHHhcCCC--CCCHHH----HHHHHHHHhHHHHHHhCC
Q 000406 1383 ---------------INVKWLRKQTALVGQEP--ALFAGTIRDNIALGNP--KASWAE----IEEAAEEAYIHKFISSLP 1439 (1560)
Q Consensus 1383 ---------------i~l~~LR~~I~~VpQdp--~LF~gTIreNL~~g~~--~~sd~e----I~~al~~a~l~~~I~~Lp 1439 (1560)
.+...+|+.|+||||+| .+|..||+|||.++.. ..+.++ +.++++.+++.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~------ 156 (305)
T PRK13651 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDE------ 156 (305)
T ss_pred cccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCCh------
Confidence 13467889999999986 6888999999987631 233333 344444444320
Q ss_pred CCccccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCceEEEEecChHHHhh-c
Q 000406 1440 QGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVS-KRATTIVVAHRLSTIRE-A 1517 (1560)
Q Consensus 1440 ~Gldt~Vge~G~~LSGGQrQRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~-~~~TvI~IAHRlsti~~-a 1517 (1560)
........+||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|+++. .++|||+|||+++.+.. |
T Consensus 157 ----~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~a 232 (305)
T PRK13651 157 ----SYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWT 232 (305)
T ss_pred ----hhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhC
Confidence 22334556899999999999999999999999999999999999999999999864 47899999999998755 9
Q ss_pred CEEEEEeCCEEEEecCHHHHHh
Q 000406 1518 NMIAVVRDGAVVEYGSHETLLA 1539 (1560)
Q Consensus 1518 DrIlVLd~G~IvE~Gt~~eLl~ 1539 (1560)
|||++|++|+|++.|+++++.+
T Consensus 233 drv~vl~~G~i~~~g~~~~~~~ 254 (305)
T PRK13651 233 KRTIFFKDGKIIKDGDTYDILS 254 (305)
T ss_pred CEEEEEECCEEEEECCHHHHhc
Confidence 9999999999999999999876
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=372.88 Aligned_cols=226 Identities=28% Similarity=0.464 Sum_probs=188.7
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCC-----ccEEEECCEecCCC--CH
Q 000406 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPN-----QGKVMIEGVDLREI--NV 1385 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~-----~G~I~IdGvdi~~i--~l 1385 (1560)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|+ +|+|.+||.++... +.
T Consensus 4 ~l~~~~l~~~~~~---~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 80 (251)
T PRK14249 4 KIKIRGVNFFYHK---HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDV 80 (251)
T ss_pred eEEEEEEEEEECC---eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccCh
Confidence 4899999999963 35999999999999999999999999999999999999997 69999999998653 45
Q ss_pred HHHhhceEEEcCCCCCCCccHHHHHhcCCC--CC-CH----HHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHH
Q 000406 1386 KWLRKQTALVGQEPALFAGTIRDNIALGNP--KA-SW----AEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQK 1458 (1560)
Q Consensus 1386 ~~LR~~I~~VpQdp~LF~gTIreNL~~g~~--~~-sd----~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQr 1458 (1560)
..+|+.++||||++.+|+.|++|||.++.. .. .. +.+.++++..++.+.+ .......+.+||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~Gq~ 153 (251)
T PRK14249 81 VNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEV-------KDNLHKSGLALSGGQQ 153 (251)
T ss_pred HHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhh-------hhHhhCCcccCCHHHH
Confidence 678899999999999999999999987521 11 11 2233444444443322 2234556778999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHH
Q 000406 1459 QRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETL 1537 (1560)
Q Consensus 1459 QRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eL 1537 (1560)
||++|||||+.+|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 154 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14249 154 QRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEI 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999987667999999999999877 799999999999999999999
Q ss_pred HhhccChHHHH
Q 000406 1538 LASHLNGVYAS 1548 (1560)
Q Consensus 1538 l~~~~~g~y~~ 1548 (1560)
........+++
T Consensus 234 ~~~~~~~~~~~ 244 (251)
T PRK14249 234 FSRPRDKRTED 244 (251)
T ss_pred HhCCCChHHHH
Confidence 76433333443
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-40 Score=382.71 Aligned_cols=219 Identities=28% Similarity=0.504 Sum_probs=183.8
Q ss_pred EEEEEEEEEcCCCCC--ccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCC----ccHHH
Q 000406 673 IEFKGVTFAYPSRPE--TVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKS----LQVKW 746 (1560)
Q Consensus 673 i~~~~vs~~y~~~~~--~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~----~~~~~ 746 (1560)
|+++||+|+|+.... .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|++||.++.. .....
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 789999999974221 259999999999999999999999999999999999999999999999999863 23456
Q ss_pred HhccEEEEecCC--cCccccHHHHHhcCCCC--CCHHHHHHHHHHhhhHHHHHhCCCCCC-cccCCCCCCCChHHHHHHH
Q 000406 747 LRTQIGMVGQEP--ILFATSILENVLMGKEN--ATMKEAVAACKAASAHSFISELPLGYD-TQVGDRGTQLSGGQKQRIA 821 (1560)
Q Consensus 747 lr~~i~~v~Q~~--~lf~~Tv~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~gl~-t~~~~~g~~LSgGQrQRia 821 (1560)
+|++|+||+|+| .+|..||.||+.++... .+.++... .+.+.++.+ |+. ...+..+.+||||||||++
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~~LSgGqkqrva 154 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEK-----IAAEKLEMV--GLADEFWEKSPFELSGGQMRRVA 154 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHH-----HHHHHHHHc--CCChhhccCCcccCCHHHHHHHH
Confidence 788999999998 78889999999987432 12222211 112233333 443 3446777899999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhHhh
Q 000406 822 LARAMIKDPRILLLDEPTSALDSESESIVQQAIDKIS-VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLE 898 (1560)
Q Consensus 822 lARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l~~ 898 (1560)
|||||+.+|+||||||||++||+.+...+.+.|+++. +|+|||+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 155 iA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 233 (288)
T PRK13643 155 IAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQ 233 (288)
T ss_pred HHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHc
Confidence 9999999999999999999999999999999998874 48999999999998865 99999999999999999999865
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=384.55 Aligned_cols=230 Identities=27% Similarity=0.385 Sum_probs=187.2
Q ss_pred cEEEEEEEEEcCCCC-------CccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCH
Q 000406 1313 GIELKMVTFTYPSRP-------EVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINV 1385 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~~-------~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l 1385 (1560)
-|+++||++.|+... ...+|+||||+|++||++||||+||||||||+++|+|+++|++|+|.++|.|+..++.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 489999999996321 2469999999999999999999999999999999999999999999999999998875
Q ss_pred H---HHhhceEEEcCCCC--CCC-ccHHHHHhcC---CCCCCH----HHHHHHHHHHhHHHHHHhCCCCccccccCCCCC
Q 000406 1386 K---WLRKQTALVGQEPA--LFA-GTIRDNIALG---NPKASW----AEIEEAAEEAYIHKFISSLPQGYETQVGESGVQ 1452 (1560)
Q Consensus 1386 ~---~LR~~I~~VpQdp~--LF~-gTIreNL~~g---~~~~sd----~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~ 1452 (1560)
. .+|++|+||||+|. |++ .||.+|+... +..... +++.++++.+++.+ ..++. ....
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~------~~~~~----~p~~ 154 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRP------EHYDR----YPHM 154 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCCh------HHhcC----CCcc
Confidence 3 56789999999994 555 4899888531 111122 33455555555531 12233 3457
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CceEEEEecChHHHhh-cCEEEEEeCCEEE
Q 000406 1453 LSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSK--RATTIVVAHRLSTIRE-ANMIAVVRDGAVV 1529 (1560)
Q Consensus 1453 LSGGQrQRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~--~~TvI~IAHRlsti~~-aDrIlVLd~G~Iv 1529 (1560)
||||||||++|||||+.+|+|||+||||++||..+.+.|.+.|+++.+ +.|+|+|||+++.+.. ||+|+||++|+|+
T Consensus 155 LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~iv 234 (327)
T PRK11308 155 FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCV 234 (327)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999998754 7899999999999975 9999999999999
Q ss_pred EecCHHHHHhhccChHHHHHHHH
Q 000406 1530 EYGSHETLLASHLNGVYASLVRA 1552 (1560)
Q Consensus 1530 E~Gt~~eLl~~~~~g~y~~l~~~ 1552 (1560)
|.|++++++++....+-..|+..
T Consensus 235 e~g~~~~~~~~p~hpyt~~ll~~ 257 (327)
T PRK11308 235 EKGTKEQIFNNPRHPYTQALLSA 257 (327)
T ss_pred EECCHHHHhcCCCCHHHHHHHHh
Confidence 99999999974333333345443
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=378.00 Aligned_cols=213 Identities=29% Similarity=0.477 Sum_probs=186.3
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhhce
Q 000406 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQT 1392 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~~I 1392 (1560)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+...+|+.+
T Consensus 11 ~l~i~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 87 (265)
T PRK10575 11 TFALRNVSFRVPG---RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKV 87 (265)
T ss_pred eEEEeeEEEEECC---EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhhe
Confidence 4999999999963 3699999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEcCCCCCCCc-cHHHHHhcCCC----------CCCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 000406 1393 ALVGQEPALFAG-TIRDNIALGNP----------KASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRI 1461 (1560)
Q Consensus 1393 ~~VpQdp~LF~g-TIreNL~~g~~----------~~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRL 1461 (1560)
+|+||++.++.+ |+++|+.++.. ...++++.++++.+++.+++... ..+||||||||+
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrv 156 (265)
T PRK10575 88 AYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRL-----------VDSLSGGERQRA 156 (265)
T ss_pred EEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCC-----------cccCCHHHHHHH
Confidence 999999877654 99999986521 01234566677777665544333 237999999999
Q ss_pred HHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc--CCceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHHH
Q 000406 1462 AIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVS--KRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLL 1538 (1560)
Q Consensus 1462 aLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~--~~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eLl 1538 (1560)
+|||||+.+|+||||||||++||+.+.+.+.+.|++.. .++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 157 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (265)
T PRK10575 157 WIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELM 236 (265)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhc
Confidence 99999999999999999999999999999999999874 27899999999999865 9999999999999999999987
Q ss_pred h
Q 000406 1539 A 1539 (1560)
Q Consensus 1539 ~ 1539 (1560)
+
T Consensus 237 ~ 237 (265)
T PRK10575 237 R 237 (265)
T ss_pred C
Confidence 5
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=373.44 Aligned_cols=229 Identities=26% Similarity=0.431 Sum_probs=189.1
Q ss_pred ccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccC--C---CccEEEECCEecCCC--C
Q 000406 1312 LGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYD--P---NQGKVMIEGVDLREI--N 1384 (1560)
Q Consensus 1312 ~~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~--p---~~G~I~IdGvdi~~i--~ 1384 (1560)
+.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|+|+++ | ++|+|.+||.++... .
T Consensus 3 ~~l~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~ 79 (252)
T PRK14256 3 NKVKLEQLNVHFGK---NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79 (252)
T ss_pred cEEEEEEEEEEeCC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCC
Confidence 45999999999963 359999999999999999999999999999999999986 4 689999999998753 4
Q ss_pred HHHHhhceEEEcCCCCCCC-ccHHHHHhcCCC--C-CC----HHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChH
Q 000406 1385 VKWLRKQTALVGQEPALFA-GTIRDNIALGNP--K-AS----WAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGG 1456 (1560)
Q Consensus 1385 l~~LR~~I~~VpQdp~LF~-gTIreNL~~g~~--~-~s----d~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGG 1456 (1560)
...+|+.++|+||++.+|. .|++||+.++.. . .+ ++++.++++..++.+.+. ......+.+||||
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G 152 (252)
T PRK14256 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVK-------DRLKSNAMELSGG 152 (252)
T ss_pred hHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------HHhhCCcCcCCHH
Confidence 4577899999999999998 599999986421 1 11 123445555555543322 1233456689999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHH
Q 000406 1457 QKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHE 1535 (1560)
Q Consensus 1457 QrQRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~ 1535 (1560)
||||++|||||+++|++|||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|+|++.|+++
T Consensus 153 ~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 232 (252)
T PRK14256 153 QQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETK 232 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999998777899999999999865 9999999999999999999
Q ss_pred HHHhhccChHHHHHH
Q 000406 1536 TLLASHLNGVYASLV 1550 (1560)
Q Consensus 1536 eLl~~~~~g~y~~l~ 1550 (1560)
++..+......+.++
T Consensus 233 ~~~~~~~~~~~~~~~ 247 (252)
T PRK14256 233 KIFTTPEKKQTEDYI 247 (252)
T ss_pred HHHhCCCcHHHHHHH
Confidence 998743333344443
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=379.13 Aligned_cols=216 Identities=31% Similarity=0.511 Sum_probs=188.0
Q ss_pred ccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCc---cEEEECCEecCCCCHHHH
Q 000406 1312 LGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQ---GKVMIEGVDLREINVKWL 1388 (1560)
Q Consensus 1312 ~~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~---G~I~IdGvdi~~i~l~~L 1388 (1560)
..|+++|++++|+.. ..++|+||||+|++||++||+|+||||||||+++|+|+++|++ |+|.+||.++...+...+
T Consensus 4 ~~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~ 82 (282)
T PRK13640 4 NIVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI 82 (282)
T ss_pred ceEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHH
Confidence 359999999999642 2359999999999999999999999999999999999999987 899999999988777788
Q ss_pred hhceEEEcCCC--CCCCccHHHHHhcCCC--CCCHH----HHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHH
Q 000406 1389 RKQTALVGQEP--ALFAGTIRDNIALGNP--KASWA----EIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQR 1460 (1560)
Q Consensus 1389 R~~I~~VpQdp--~LF~gTIreNL~~g~~--~~sd~----eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQR 1460 (1560)
|++++||||+| .+++.|++|||.++.. ..+.+ ++.++++.+++.++.... ..+||||||||
T Consensus 83 ~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-----------~~~LS~G~~qr 151 (282)
T PRK13640 83 REKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSE-----------PANLSGGQKQR 151 (282)
T ss_pred HhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCC-----------cccCCHHHHHH
Confidence 89999999998 4678899999987522 22332 355566666665544433 35899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CceEEEEecChHHHhhcCEEEEEeCCEEEEecCHHHHH
Q 000406 1461 IAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSK--RATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETLL 1538 (1560)
Q Consensus 1461 LaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~--~~TvI~IAHRlsti~~aDrIlVLd~G~IvE~Gt~~eLl 1538 (1560)
++|||||+.+|++|||||||++||+.+...+.+.|+++.+ ++|||+|||+++.+..||+|++|++|++++.|++++++
T Consensus 152 v~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (282)
T PRK13640 152 VAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIF 231 (282)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999999999998753 68999999999999889999999999999999999887
Q ss_pred h
Q 000406 1539 A 1539 (1560)
Q Consensus 1539 ~ 1539 (1560)
.
T Consensus 232 ~ 232 (282)
T PRK13640 232 S 232 (282)
T ss_pred c
Confidence 5
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=374.91 Aligned_cols=217 Identities=31% Similarity=0.467 Sum_probs=183.0
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccC-----CCccEEEECCEecCC--CCH
Q 000406 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYD-----PNQGKVMIEGVDLRE--INV 1385 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~-----p~~G~I~IdGvdi~~--i~l 1385 (1560)
.|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||.++.. .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~ 80 (251)
T PRK14251 4 IISAKDVHLSYGN---YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL 80 (251)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence 4899999999963 359999999999999999999999999999999999997 479999999999864 345
Q ss_pred HHHhhceEEEcCCCCCCCccHHHHHhcCCC--CC-C----HHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHH
Q 000406 1386 KWLRKQTALVGQEPALFAGTIRDNIALGNP--KA-S----WAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQK 1458 (1560)
Q Consensus 1386 ~~LR~~I~~VpQdp~LF~gTIreNL~~g~~--~~-s----d~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQr 1458 (1560)
..+|+.++|++|++.+|+.|++||+.++.. .. . ++++.++++..++++.+ .........+||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~ 153 (251)
T PRK14251 81 VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKET-------KDNLDRNAQAFSGGQQ 153 (251)
T ss_pred HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcch-------HHHhccChhhCCHHHH
Confidence 567889999999999999999999986421 11 1 12334444444442110 1122345568999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHH
Q 000406 1459 QRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETL 1537 (1560)
Q Consensus 1459 QRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eL 1537 (1560)
||++|||||+++|+||||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 154 qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14251 154 QRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEM 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988777899999999999876 999999999999999999999
Q ss_pred Hh
Q 000406 1538 LA 1539 (1560)
Q Consensus 1538 l~ 1539 (1560)
..
T Consensus 234 ~~ 235 (251)
T PRK14251 234 FI 235 (251)
T ss_pred Hh
Confidence 76
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=381.02 Aligned_cols=221 Identities=29% Similarity=0.549 Sum_probs=186.1
Q ss_pred cEEEEEEEEEcCCCC--CccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCc----cHH
Q 000406 672 KIEFKGVTFAYPSRP--ETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSL----QVK 745 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~~--~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~----~~~ 745 (1560)
.|+++||+++|+... ..++|+||||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++... +..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 388999999996422 13699999999999999999999999999999999999999999999999998653 235
Q ss_pred HHhccEEEEecCC--cCccccHHHHHhcCCCC--CCHHHHHHHHHHhhhHHHHHhCCCCCCc-ccCCCCCCCChHHHHHH
Q 000406 746 WLRTQIGMVGQEP--ILFATSILENVLMGKEN--ATMKEAVAACKAASAHSFISELPLGYDT-QVGDRGTQLSGGQKQRI 820 (1560)
Q Consensus 746 ~lr~~i~~v~Q~~--~lf~~Tv~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~gl~t-~~~~~g~~LSgGQrQRi 820 (1560)
.+|++||||||+| .+|+.||.|||.++... .+.++..+. +.+.++.+ |+++ ..+..+.+||||||||+
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrv 154 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNY-----AHRLLMDL--GFSRDVMSQSPFQMSGGQMRKI 154 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHc--CCChhhhhCCcccCCHHHHHHH
Confidence 6788999999997 58888999999986322 122222221 23345544 6763 45677889999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhHh
Q 000406 821 ALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKIS--VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLL 897 (1560)
Q Consensus 821 alARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l~ 897 (1560)
+|||||+.+|+||||||||++||+.+...+.+.|+++. .|+|||+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 155 ~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 234 (286)
T PRK13646 155 AIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELF 234 (286)
T ss_pred HHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999999999999874 48999999999999864 9999999999999999998876
Q ss_pred hh
Q 000406 898 ER 899 (1560)
Q Consensus 898 ~~ 899 (1560)
+.
T Consensus 235 ~~ 236 (286)
T PRK13646 235 KD 236 (286)
T ss_pred hC
Confidence 53
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=372.81 Aligned_cols=221 Identities=25% Similarity=0.452 Sum_probs=183.6
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHH-hhce
Q 000406 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWL-RKQT 1392 (1560)
Q Consensus 1314 I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~L-R~~I 1392 (1560)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+.... |+.+
T Consensus 3 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (242)
T TIGR03411 3 LYLEGLSVSFDG---FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGI 79 (242)
T ss_pred EEEEeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCe
Confidence 789999999963 359999999999999999999999999999999999999999999999999988876654 5579
Q ss_pred EEEcCCCCCCCc-cHHHHHhcCCCCCCH--HHH---HHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 000406 1393 ALVGQEPALFAG-TIRDNIALGNPKASW--AEI---EEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARA 1466 (1560)
Q Consensus 1393 ~~VpQdp~LF~g-TIreNL~~g~~~~sd--~eI---~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLARA 1466 (1560)
+|+||++.+|.+ |++||+.++...... ..+ ........+.+++..+ |++.........||||||||++||||
T Consensus 80 ~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~Ge~qrv~lara 157 (242)
T TIGR03411 80 GRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETI--GLADEADRLAGLLSHGQKQWLEIGML 157 (242)
T ss_pred eEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHH
Confidence 999999999986 999999875321000 000 0000111223333333 44444455566899999999999999
Q ss_pred HccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHHHh
Q 000406 1467 ILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLA 1539 (1560)
Q Consensus 1467 LLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eLl~ 1539 (1560)
|+++|+||||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|++++++.
T Consensus 158 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 231 (242)
T TIGR03411 158 LMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQA 231 (242)
T ss_pred HhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHhc
Confidence 99999999999999999999999999999998777899999999999976 99999999999999999999874
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=392.86 Aligned_cols=211 Identities=34% Similarity=0.512 Sum_probs=178.0
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHH----hhceEEEcCCCCCCC-c
Q 000406 1330 TVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWL----RKQTALVGQEPALFA-G 1404 (1560)
Q Consensus 1330 ~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~L----R~~I~~VpQdp~LF~-g 1404 (1560)
.+|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.++...+...+ |++++||||++.+|. .
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 38999999999999999999999999999999999999999999999999998877654 358999999999997 5
Q ss_pred cHHHHHhcCCC--CCC----HHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeC
Q 000406 1405 TIRDNIALGNP--KAS----WAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDE 1478 (1560)
Q Consensus 1405 TIreNL~~g~~--~~s----d~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLARALLr~p~ILILDE 1478 (1560)
|++|||.++.. ..+ .+++.++++.+++.++.... ..+||||||||++|||||+.+|+||||||
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~-----------~~~LSgGq~QRv~LArAL~~~P~iLLLDE 190 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSY-----------PDELSGGMRQRVGLARALAINPDILLMDE 190 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcC-----------cccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 99999987521 112 23455566666665544433 34799999999999999999999999999
Q ss_pred CCcCCCHHHHHHHHHHHHHhc--CCceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHHHhhccChHHHHHHH
Q 000406 1479 ASSALDLESEKHVQDALRKVS--KRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLASHLNGVYASLVR 1551 (1560)
Q Consensus 1479 aTSaLD~~Te~~I~~~L~~~~--~~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eLl~~~~~g~y~~l~~ 1551 (1560)
||++||+.+.+.+++.|+++. .++|+|+|||+++.+.. ||+|++|++|+|++.|++++++.+..+.+...++.
T Consensus 191 Pts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~~~~~~v~~~~~ 266 (400)
T PRK10070 191 AFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYVRTFFR 266 (400)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhCcccHHHHHHHh
Confidence 999999999999999999874 47899999999999865 99999999999999999999987432334444443
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=374.53 Aligned_cols=221 Identities=26% Similarity=0.459 Sum_probs=189.2
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhhceE
Q 000406 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTA 1393 (1560)
Q Consensus 1314 I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~~I~ 1393 (1560)
++++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++..++...+++.++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (255)
T PRK11231 3 LRTENLTVGYGT---KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLA 79 (255)
T ss_pred EEEEeEEEEECC---EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheE
Confidence 789999999963 46999999999999999999999999999999999999999999999999998888888889999
Q ss_pred EEcCCCCCCCc-cHHHHHhcCCC----------CCCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHH
Q 000406 1394 LVGQEPALFAG-TIRDNIALGNP----------KASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIA 1462 (1560)
Q Consensus 1394 ~VpQdp~LF~g-TIreNL~~g~~----------~~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLa 1462 (1560)
|+||++.+|.+ |+.||+.++.. ....+++.++++..++.++. ......||||||||++
T Consensus 80 ~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~ 148 (255)
T PRK11231 80 LLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLA-----------DRRLTDLSGGQRQRAF 148 (255)
T ss_pred EecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHH-----------cCCcccCCHHHHHHHH
Confidence 99999998876 99999987521 01123455555555554433 2334579999999999
Q ss_pred HHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHHHhh
Q 000406 1463 IARAILKGSRVLLLDEASSALDLESEKHVQDALRKVS-KRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLAS 1540 (1560)
Q Consensus 1463 LARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~-~~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eLl~~ 1540 (1560)
||||++++|++|||||||++||+++.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|++++++.
T Consensus 149 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~- 227 (255)
T PRK11231 149 LAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT- 227 (255)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC-
Confidence 9999999999999999999999999999999999864 47899999999999865 99999999999999999999875
Q ss_pred ccChHHHHHHH
Q 000406 1541 HLNGVYASLVR 1551 (1560)
Q Consensus 1541 ~~~g~y~~l~~ 1551 (1560)
...+.+.+.
T Consensus 228 --~~~~~~~~~ 236 (255)
T PRK11231 228 --PGLLRTVFD 236 (255)
T ss_pred --HHHHHHHhC
Confidence 234555553
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-40 Score=369.23 Aligned_cols=204 Identities=35% Similarity=0.505 Sum_probs=171.5
Q ss_pred EEEEEEEEEcCCCC-CccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHH----H
Q 000406 1314 IELKMVTFTYPSRP-EVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKW----L 1388 (1560)
Q Consensus 1314 I~~~nVsf~Y~~~~-~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~----L 1388 (1560)
|+++||+++|+... ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+... .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 57899999996421 146999999999999999999999999999999999999999999999999998876432 4
Q ss_pred hhceEEEcCCCCCCCc-cHHHHHhcCCC--CCC----HHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 000406 1389 RKQTALVGQEPALFAG-TIRDNIALGNP--KAS----WAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRI 1461 (1560)
Q Consensus 1389 R~~I~~VpQdp~LF~g-TIreNL~~g~~--~~s----d~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRL 1461 (1560)
|++++|+||++.+|.+ |++||+.++.. ... ++++.++++.. |++........+||||||||+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrv 149 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERV-----------GLGDRLNHYPSELSGGQQQRV 149 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHc-----------CCchhhhcChhhcCHHHHHHH
Confidence 6789999999999986 99999987521 111 12333344443 344334445568999999999
Q ss_pred HHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CceEEEEecChHHHhhcCEEEEEeCCEE
Q 000406 1462 AIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSK--RATTIVVAHRLSTIREANMIAVVRDGAV 1528 (1560)
Q Consensus 1462 aLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~--~~TvI~IAHRlsti~~aDrIlVLd~G~I 1528 (1560)
+|||||+.+|+||||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+..||+|++|++|++
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 999999999999999999999999999999999998754 7899999999999888999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-40 Score=365.08 Aligned_cols=203 Identities=26% Similarity=0.408 Sum_probs=177.6
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhhceE
Q 000406 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTA 1393 (1560)
Q Consensus 1314 I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~~I~ 1393 (1560)
|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++... ..+|+.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~ 75 (208)
T cd03268 1 LKTNDLTKTYGK---KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIG 75 (208)
T ss_pred CEEEEEEEEECC---eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEE
Confidence 578999999953 4699999999999999999999999999999999999999999999999988764 56788999
Q ss_pred EEcCCCCCC-CccHHHHHhcCC--CCCCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHccC
Q 000406 1394 LVGQEPALF-AGTIRDNIALGN--PKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKG 1470 (1560)
Q Consensus 1394 ~VpQdp~LF-~gTIreNL~~g~--~~~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLARALLr~ 1470 (1560)
||||++.+| ..|++||+.++. ...+++++.++++..++.+.... ....||||||||++||||++.+
T Consensus 76 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~la~al~~~ 144 (208)
T cd03268 76 ALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKK-----------KVKGFSLGMKQRLGIALALLGN 144 (208)
T ss_pred EecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhh-----------hHhhCCHHHHHHHHHHHHHhcC
Confidence 999999887 579999997642 12345667777777777655433 2347999999999999999999
Q ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCceEEEEecChHHHhh-cCEEEEEeCCEEEEec
Q 000406 1471 SRVLLLDEASSALDLESEKHVQDALRKVS-KRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYG 1532 (1560)
Q Consensus 1471 p~ILILDEaTSaLD~~Te~~I~~~L~~~~-~~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~G 1532 (1560)
|++|||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 145 PDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999865 47899999999999865 9999999999999865
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=374.24 Aligned_cols=217 Identities=31% Similarity=0.505 Sum_probs=183.3
Q ss_pred cEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCC---CCccEEEECCeecCCccHHHHh
Q 000406 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYD---PTKGLITLDGHDLKSLQVKWLR 748 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~---~~~G~I~i~g~~i~~~~~~~lr 748 (1560)
.|+++|+++.|+. +++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++...+....|
T Consensus 2 ~~~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~ 78 (246)
T PRK14269 2 IAKTTNLNLFYGK---KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR 78 (246)
T ss_pred ceeeeeeEEEECC---EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence 4789999999973 458999999999999999999999999999999999984 6999999999999887777788
Q ss_pred ccEEEEecCCcCccccHHHHHhcCCCCC----C-H---HHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHH
Q 000406 749 TQIGMVGQEPILFATSILENVLMGKENA----T-M---KEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRI 820 (1560)
Q Consensus 749 ~~i~~v~Q~~~lf~~Tv~eNi~~g~~~~----~-~---~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRi 820 (1560)
+.|+|+||++.+|+.|++||+.++.... . . +++.+.++..++.+++ .....+.+.+||||||||+
T Consensus 79 ~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~~qrv 151 (246)
T PRK14269 79 KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEV-------KDKLKQNALALSGGQQQRL 151 (246)
T ss_pred hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhh-------hHHhcCCcccCCHHHHHHH
Confidence 8999999999999999999998753110 0 1 1122222222222111 2334667789999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhHhh
Q 000406 821 ALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLE 898 (1560)
Q Consensus 821 alARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l~~ 898 (1560)
+|||||+++|+||||||||++||+.+...+.+.|.++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 152 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 230 (246)
T PRK14269 152 CIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFE 230 (246)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999999988678999999999998865 99999999999999999988764
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=370.47 Aligned_cols=218 Identities=24% Similarity=0.398 Sum_probs=180.5
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHH-Hhhc
Q 000406 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKW-LRKQ 1391 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~-LR~~ 1391 (1560)
-|+++||+++|+. .++|+++||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+... +|+.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 5 MLSFDKVSAHYGK---IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred EEEEEeEEEeeCC---ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence 3899999999963 35999999999999999999999999999999999999999999999999998887654 6788
Q ss_pred eEEEcCCCCCCCc-cHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHccC
Q 000406 1392 TALVGQEPALFAG-TIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKG 1470 (1560)
Q Consensus 1392 I~~VpQdp~LF~g-TIreNL~~g~~~~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLARALLr~ 1470 (1560)
++|+||++.+|.+ |+++|+.++......++..+.++ +.+..++ +++.........||||||||++|||||+++
T Consensus 82 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~l~~~~-~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 155 (237)
T PRK11614 82 VAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIK-----WVYELFP-RLHERRIQRAGTMSGGEQQMLAIGRALMSQ 155 (237)
T ss_pred EEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHH-----HHHHHHH-HHHHHHhCchhhCCHHHHHHHHHHHHHHhC
Confidence 9999999999985 99999987532122222222111 1111111 111112234557999999999999999999
Q ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHHHh
Q 000406 1471 SRVLLLDEASSALDLESEKHVQDALRKVS-KRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLA 1539 (1560)
Q Consensus 1471 p~ILILDEaTSaLD~~Te~~I~~~L~~~~-~~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eLl~ 1539 (1560)
|+||||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 156 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 156 PRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred CCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 99999999999999999999999999864 47899999999998755 99999999999999999999975
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-40 Score=390.70 Aligned_cols=220 Identities=34% Similarity=0.552 Sum_probs=186.7
Q ss_pred EEEEEEEEEcCCCC-CccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHH---HHh
Q 000406 673 IEFKGVTFAYPSRP-ETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVK---WLR 748 (1560)
Q Consensus 673 i~~~~vs~~y~~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~---~lr 748 (1560)
|+++|++++|+... +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++.. .+|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999997211 34699999999999999999999999999999999999999999999999999877654 347
Q ss_pred ccEEEEecCCcCcc-ccHHHHHhcCCCC--CCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHH
Q 000406 749 TQIGMVGQEPILFA-TSILENVLMGKEN--ATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARA 825 (1560)
Q Consensus 749 ~~i~~v~Q~~~lf~-~Tv~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARA 825 (1560)
++|+||+|++.+|+ .|++||+.++... ...++..+ .+.+.++.+ |++......+.+||||||||++||||
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~~~LSgGq~qRv~lAra 154 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKA-----RVTELLELV--GLSDKADRYPAQLSGGQKQRVAIARA 154 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHHH
Confidence 88999999999987 5999999876321 12222111 223344444 56556677778999999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhHhhh
Q 000406 826 MIKDPRILLLDEPTSALDSESESIVQQAIDKIS--VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLER 899 (1560)
Q Consensus 826 l~~~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l~~~ 899 (1560)
|+.+|+||||||||++||+.+...+.+.|+++. .|+|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 155 L~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~~ 231 (343)
T PRK11153 155 LASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSH 231 (343)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999999999999874 38999999999999876 999999999999999999998754
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=376.42 Aligned_cols=218 Identities=29% Similarity=0.486 Sum_probs=186.7
Q ss_pred ccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCC-----CccEEEECCEecCC--CC
Q 000406 1312 LGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDP-----NQGKVMIEGVDLRE--IN 1384 (1560)
Q Consensus 1312 ~~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p-----~~G~I~IdGvdi~~--i~ 1384 (1560)
..|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||.++.. .+
T Consensus 24 ~~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~ 100 (272)
T PRK14236 24 TALEVRNLNLFYGD---KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVD 100 (272)
T ss_pred cEEEEEEEEEEECC---eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccC
Confidence 35999999999963 3599999999999999999999999999999999999984 89999999999875 34
Q ss_pred HHHHhhceEEEcCCCCCCCccHHHHHhcCCC--CC-C----HHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHH
Q 000406 1385 VKWLRKQTALVGQEPALFAGTIRDNIALGNP--KA-S----WAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQ 1457 (1560)
Q Consensus 1385 l~~LR~~I~~VpQdp~LF~gTIreNL~~g~~--~~-s----d~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQ 1457 (1560)
...+|+.++|+||++.+|++|++||+.++.. .. . ++++.++++.+++.+.+. +..+..+..|||||
T Consensus 101 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq 173 (272)
T PRK14236 101 VAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVK-------DRLHENAFGLSGGQ 173 (272)
T ss_pred HHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHH-------HHhhCCcccCCHHH
Confidence 5678899999999999999999999986421 11 1 123455555555443322 23455667899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHH
Q 000406 1458 KQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHET 1536 (1560)
Q Consensus 1458 rQRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~e 1536 (1560)
|||++|||||+++|+||||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|+|++.|++++
T Consensus 174 ~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 253 (272)
T PRK14236 174 QQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDT 253 (272)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHH
Confidence 99999999999999999999999999999999999999998778899999999999865 99999999999999999999
Q ss_pred HHh
Q 000406 1537 LLA 1539 (1560)
Q Consensus 1537 Ll~ 1539 (1560)
+.+
T Consensus 254 ~~~ 256 (272)
T PRK14236 254 LFT 256 (272)
T ss_pred Hhc
Confidence 986
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=373.89 Aligned_cols=215 Identities=28% Similarity=0.429 Sum_probs=181.9
Q ss_pred ccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCC--------
Q 000406 1312 LGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREI-------- 1383 (1560)
Q Consensus 1312 ~~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i-------- 1383 (1560)
+.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 4 NKLNVIDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred ccEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence 35999999999963 4599999999999999999999999999999999999999999999999998642
Q ss_pred -----CHHHHhhceEEEcCCCCCCCc-cHHHHHhcCC---CCCCH----HHHHHHHHHHhHHHHHHhCCCCccccccCCC
Q 000406 1384 -----NVKWLRKQTALVGQEPALFAG-TIRDNIALGN---PKASW----AEIEEAAEEAYIHKFISSLPQGYETQVGESG 1450 (1560)
Q Consensus 1384 -----~l~~LR~~I~~VpQdp~LF~g-TIreNL~~g~---~~~sd----~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G 1450 (1560)
....+|+.++||||++.+|.. |++||+.++. ..... +++.++++..++.+.. .....
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~----------~~~~~ 150 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERA----------QGKYP 150 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhh----------hhCCc
Confidence 134678899999999999974 9999997531 01121 2334444444433221 13445
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCceEEEEecChHHHhh-cCEEEEEeCCEE
Q 000406 1451 VQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVS-KRATTIVVAHRLSTIRE-ANMIAVVRDGAV 1528 (1560)
Q Consensus 1451 ~~LSGGQrQRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~-~~~TvI~IAHRlsti~~-aDrIlVLd~G~I 1528 (1560)
..||||||||++|||||+++|+||||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+.. ||||++|++|++
T Consensus 151 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i 230 (257)
T PRK10619 151 VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 230 (257)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 6899999999999999999999999999999999999999999999875 47999999999999986 999999999999
Q ss_pred EEecCHHHHHh
Q 000406 1529 VEYGSHETLLA 1539 (1560)
Q Consensus 1529 vE~Gt~~eLl~ 1539 (1560)
++.|+++++++
T Consensus 231 ~~~~~~~~~~~ 241 (257)
T PRK10619 231 EEEGAPEQLFG 241 (257)
T ss_pred EEeCCHHHhhh
Confidence 99999999986
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=373.05 Aligned_cols=217 Identities=32% Similarity=0.504 Sum_probs=184.5
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCC-----CccEEEECCEecCC--CCH
Q 000406 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDP-----NQGKVMIEGVDLRE--INV 1385 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p-----~~G~I~IdGvdi~~--i~l 1385 (1560)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||.++.. .+.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14240 3 KISVKDLDLFYGD---FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDV 79 (250)
T ss_pred eEEEEEEEEEECC---ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence 5899999999963 3599999999999999999999999999999999999863 69999999999875 355
Q ss_pred HHHhhceEEEcCCCCCCCccHHHHHhcCCC--CC-----CHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHH
Q 000406 1386 KWLRKQTALVGQEPALFAGTIRDNIALGNP--KA-----SWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQK 1458 (1560)
Q Consensus 1386 ~~LR~~I~~VpQdp~LF~gTIreNL~~g~~--~~-----sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQr 1458 (1560)
..+|+.++|+||++.+|+.|+++|+.++.. .. .++++.++++.+++.+.+ ..........||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~G~~ 152 (250)
T PRK14240 80 NQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEV-------KDRLKKSALGLSGGQQ 152 (250)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-------HHHHhcCCCCCCHHHH
Confidence 678899999999999999999999987421 11 123344555555443222 1233445568999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHH
Q 000406 1459 QRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETL 1537 (1560)
Q Consensus 1459 QRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eL 1537 (1560)
||++|||||+.+|+||||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 232 (250)
T PRK14240 153 QRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDL 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778899999999998866 999999999999999999999
Q ss_pred Hh
Q 000406 1538 LA 1539 (1560)
Q Consensus 1538 l~ 1539 (1560)
..
T Consensus 233 ~~ 234 (250)
T PRK14240 233 FT 234 (250)
T ss_pred Hh
Confidence 86
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=380.47 Aligned_cols=220 Identities=30% Similarity=0.527 Sum_probs=183.9
Q ss_pred EEEEEEEEEcCCCC--CccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCC----ccHHH
Q 000406 673 IEFKGVTFAYPSRP--ETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKS----LQVKW 746 (1560)
Q Consensus 673 i~~~~vs~~y~~~~--~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~----~~~~~ 746 (1560)
|+++|++++|+... ..++|+||||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.. .....
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 88999999997422 1459999999999999999999999999999999999999999999999999863 23456
Q ss_pred HhccEEEEecCC--cCccccHHHHHhcCCCC--CCHHHHHHHHHHhhhHHHHHhCCCCCC-cccCCCCCCCChHHHHHHH
Q 000406 747 LRTQIGMVGQEP--ILFATSILENVLMGKEN--ATMKEAVAACKAASAHSFISELPLGYD-TQVGDRGTQLSGGQKQRIA 821 (1560)
Q Consensus 747 lr~~i~~v~Q~~--~lf~~Tv~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~gl~-t~~~~~g~~LSgGQrQRia 821 (1560)
.+++|+||+|+| .+|+.||+|||.++... .+.++..+. +.+.++.+ |+. ...+..+.+||||||||++
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrv~ 155 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQK-----AREMIELV--GLPEELLARSPFELSGGQMRRVA 155 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHC--CCChhhhhCCcccCCHHHHHHHH
Confidence 778899999998 68888999999886321 122222211 12334443 554 3346677899999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhHhh
Q 000406 822 LARAMIKDPRILLLDEPTSALDSESESIVQQAIDKIS--VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLE 898 (1560)
Q Consensus 822 lARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l~~ 898 (1560)
|||||+.+|+||||||||++||+.+...+.+.|+++. .|.|||+|||+++.+.. ||||++|++|++++.|+++++.+
T Consensus 156 lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 235 (290)
T PRK13634 156 IAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFA 235 (290)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 9999999999999999999999999999999999874 38999999999999865 99999999999999999998865
Q ss_pred h
Q 000406 899 R 899 (1560)
Q Consensus 899 ~ 899 (1560)
.
T Consensus 236 ~ 236 (290)
T PRK13634 236 D 236 (290)
T ss_pred C
Confidence 3
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-39 Score=377.02 Aligned_cols=228 Identities=28% Similarity=0.455 Sum_probs=189.0
Q ss_pred ccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccC-----CCccEEEECCEecCC--CC
Q 000406 1312 LGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYD-----PNQGKVMIEGVDLRE--IN 1384 (1560)
Q Consensus 1312 ~~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~-----p~~G~I~IdGvdi~~--i~ 1384 (1560)
..|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.++.. .+
T Consensus 38 ~~l~i~~l~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 114 (285)
T PRK14254 38 TVIEARDLNVFYGD---EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114 (285)
T ss_pred ceEEEEEEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccc
Confidence 35999999999963 359999999999999999999999999999999999997 689999999999865 34
Q ss_pred HHHHhhceEEEcCCCCCCCccHHHHHhcCCC-----CCCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHH
Q 000406 1385 VKWLRKQTALVGQEPALFAGTIRDNIALGNP-----KASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQ 1459 (1560)
Q Consensus 1385 l~~LR~~I~~VpQdp~LF~gTIreNL~~g~~-----~~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQ 1459 (1560)
...+|+.++||||++.+|..|++||+.++.. ...+++++++++..++.+.+. ..+.....+|||||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LSgGe~q 187 (285)
T PRK14254 115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVK-------DQLDSSGLDLSGGQQQ 187 (285)
T ss_pred hHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhH-------HHHhCCcccCCHHHHH
Confidence 5678899999999999999999999986421 111334555666555532221 1234455689999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHHHhh-cCEEE-EEeCCEEEEecCHHHH
Q 000406 1460 RIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIRE-ANMIA-VVRDGAVVEYGSHETL 1537 (1560)
Q Consensus 1460 RLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlsti~~-aDrIl-VLd~G~IvE~Gt~~eL 1537 (1560)
|++|||||+++|+||||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. |||++ +|++|+|++.|+++++
T Consensus 188 rv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~ 267 (285)
T PRK14254 188 RLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKI 267 (285)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999998777899999999999876 99975 5799999999999999
Q ss_pred HhhccChHHHHH
Q 000406 1538 LASHLNGVYASL 1549 (1560)
Q Consensus 1538 l~~~~~g~y~~l 1549 (1560)
+++.....+.++
T Consensus 268 ~~~~~~~~~~~~ 279 (285)
T PRK14254 268 FENPESQRVEDY 279 (285)
T ss_pred HhCcCCHHHHHH
Confidence 864333334444
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-40 Score=391.87 Aligned_cols=205 Identities=32% Similarity=0.510 Sum_probs=177.0
Q ss_pred ccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHHH----hccEEEEecCCcCccc
Q 000406 688 TVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWL----RTQIGMVGQEPILFAT 763 (1560)
Q Consensus 688 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~l----r~~i~~v~Q~~~lf~~ 763 (1560)
+.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+ |++|+||+|++++|+.
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 458999999999999999999999999999999999999999999999999998888776 7789999999999985
Q ss_pred -cHHHHHhcCCCC--CCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCC
Q 000406 764 -SILENVLMGKEN--ATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTS 840 (1560)
Q Consensus 764 -Tv~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARAl~~~p~illLDEpts 840 (1560)
||+|||.++... ...++..+ .+.+.++.+ |++...++.+.+|||||||||+|||||+.+|+|||||||||
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~-----~~~~~l~~v--gL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~s 158 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKE-----KALELLKLV--GLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFS 158 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHhc--CCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 999999986432 11222111 112223332 56666777888999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhc--CCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhHhhh
Q 000406 841 ALDSESESIVQQAIDKIS--VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLER 899 (1560)
Q Consensus 841 ~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l~~~ 899 (1560)
+||+.+++.+++.+.++. .++|+|+|||+++.+.. ||+|++|++|++++.|++++++.+
T Consensus 159 aLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~ 220 (363)
T TIGR01186 159 ALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRN 220 (363)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhC
Confidence 999999999999998873 38999999999998755 999999999999999999998864
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=354.56 Aligned_cols=178 Identities=35% Similarity=0.636 Sum_probs=166.2
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhhceE
Q 000406 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTA 1393 (1560)
Q Consensus 1314 I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~~I~ 1393 (1560)
|+++|++++|+.. ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++... ...+|+.++
T Consensus 1 i~~~~~~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 78 (178)
T cd03247 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLIS 78 (178)
T ss_pred CEEEEEEEEeCCC-CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEE
Confidence 5789999999743 23599999999999999999999999999999999999999999999999998776 667889999
Q ss_pred EEcCCCCCCCccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 000406 1394 LVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRV 1473 (1560)
Q Consensus 1394 ~VpQdp~LF~gTIreNL~~g~~~~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLARALLr~p~I 1473 (1560)
|+||++.+|+.|++||+ ..+||||||||++||||++++|++
T Consensus 79 ~~~q~~~~~~~tv~~~i---------------------------------------~~~LS~G~~qrv~laral~~~p~~ 119 (178)
T cd03247 79 VLNQRPYLFDTTLRNNL---------------------------------------GRRFSGGERQRLALARILLQDAPI 119 (178)
T ss_pred EEccCCeeecccHHHhh---------------------------------------cccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999998 347999999999999999999999
Q ss_pred EEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHHHhhcCEEEEEeCCEEEEec
Q 000406 1474 LLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYG 1532 (1560)
Q Consensus 1474 LILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlsti~~aDrIlVLd~G~IvE~G 1532 (1560)
|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+..||++++|++|++++.|
T Consensus 120 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 120 VLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999887789999999999999889999999999999865
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=367.14 Aligned_cols=205 Identities=30% Similarity=0.465 Sum_probs=172.1
Q ss_pred EEEEEEEEEcCCCC-CccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHH---Hh
Q 000406 1314 IELKMVTFTYPSRP-EVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKW---LR 1389 (1560)
Q Consensus 1314 I~~~nVsf~Y~~~~-~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~---LR 1389 (1560)
|+++||+++|+... ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++..++... +|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 78999999996421 136999999999999999999999999999999999999999999999999998887654 34
Q ss_pred -hceEEEcCCCCCCC-ccHHHHHhcCCC--CCCH----HHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 000406 1390 -KQTALVGQEPALFA-GTIRDNIALGNP--KASW----AEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRI 1461 (1560)
Q Consensus 1390 -~~I~~VpQdp~LF~-gTIreNL~~g~~--~~sd----~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRL 1461 (1560)
+.++|+||++.+|. .|++||+.++.. .... +++.++++.. |++.........||||||||+
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrv 150 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKV-----------GLEHRINHRPSELSGGERQRV 150 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-----------CChhhhhCChhhCCHHHHHHH
Confidence 68999999999985 599999986311 1111 2233334333 344334444568999999999
Q ss_pred HHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc--CCceEEEEecChHHHhhcCEEEEEeCCEEE
Q 000406 1462 AIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVS--KRATTIVVAHRLSTIREANMIAVVRDGAVV 1529 (1560)
Q Consensus 1462 aLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~--~~~TvI~IAHRlsti~~aDrIlVLd~G~Iv 1529 (1560)
+|||||+++|+||||||||++||+.+.+.+.+.|++.. .++|+|+|||+++.+..+|+|++|++|+++
T Consensus 151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 99999999999999999999999999999999999874 368999999999999889999999999986
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-39 Score=360.92 Aligned_cols=204 Identities=32% Similarity=0.563 Sum_probs=179.3
Q ss_pred cccEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHHHhc
Q 000406 670 SGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRT 749 (1560)
Q Consensus 670 ~g~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~ 749 (1560)
.+.|+++|++++|+.. ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+|+
T Consensus 4 ~~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 82 (207)
T cd03369 4 HGEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRS 82 (207)
T ss_pred CCeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHh
Confidence 3579999999999742 236899999999999999999999999999999999999999999999999998777777888
Q ss_pred cEEEEecCCcCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHHhccC
Q 000406 750 QIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKD 829 (1560)
Q Consensus 750 ~i~~v~Q~~~lf~~Tv~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARAl~~~ 829 (1560)
.|+||+|+|.+|++|++||+.+... ...+++.++++ +++.+.+||||||||++||||++.+
T Consensus 83 ~i~~v~q~~~~~~~tv~~~l~~~~~-~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~~ 143 (207)
T cd03369 83 SLTIIPQDPTLFSGTIRSNLDPFDE-YSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLKR 143 (207)
T ss_pred hEEEEecCCcccCccHHHHhcccCC-CCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhhC
Confidence 9999999999999999999976532 22222222211 3456789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCccccccCCEEEEEeCCeEEEecCh
Q 000406 830 PRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNH 893 (1560)
Q Consensus 830 p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~D~i~vl~~G~iv~~G~~ 893 (1560)
|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|++
T Consensus 144 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 144 PRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 9999999999999999999999999988778999999999999877999999999999988764
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-39 Score=373.37 Aligned_cols=218 Identities=27% Similarity=0.430 Sum_probs=184.2
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccC-----CCccEEEECCEecCC--CCH
Q 000406 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYD-----PNQGKVMIEGVDLRE--INV 1385 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~-----p~~G~I~IdGvdi~~--i~l 1385 (1560)
-++++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||.++.. .+.
T Consensus 24 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 100 (271)
T PRK14238 24 VFDTQNLNLWYGE---DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100 (271)
T ss_pred EEEEeeeEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence 5999999999963 359999999999999999999999999999999999997 699999999999853 345
Q ss_pred HHHhhceEEEcCCCCCCCccHHHHHhcCCC--CCCHH-----HHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHH
Q 000406 1386 KWLRKQTALVGQEPALFAGTIRDNIALGNP--KASWA-----EIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQK 1458 (1560)
Q Consensus 1386 ~~LR~~I~~VpQdp~LF~gTIreNL~~g~~--~~sd~-----eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQr 1458 (1560)
..+|+.++|+||++.+|..|++||+.++.. ..+++ .+.++++..++. +++.......+..||||||
T Consensus 101 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~l~~~~~~~~~~LSgGe~ 173 (271)
T PRK14238 101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIW-------DELKDRLHDNAYGLSGGQQ 173 (271)
T ss_pred HHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCc-------chHHHHHhcCcccCCHHHH
Confidence 677889999999999999999999986421 12211 122333332221 1233344556678999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHH
Q 000406 1459 QRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETL 1537 (1560)
Q Consensus 1459 QRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eL 1537 (1560)
||++|||||+++|+||||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 174 qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~ 253 (271)
T PRK14238 174 QRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKI 253 (271)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999875 999999999999999999999
Q ss_pred Hhh
Q 000406 1538 LAS 1540 (1560)
Q Consensus 1538 l~~ 1540 (1560)
..+
T Consensus 254 ~~~ 256 (271)
T PRK14238 254 FSN 256 (271)
T ss_pred HcC
Confidence 863
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-40 Score=390.67 Aligned_cols=218 Identities=28% Similarity=0.443 Sum_probs=186.9
Q ss_pred cccEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCc--cEEEECCeecCCccHHHH
Q 000406 670 SGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTK--GLITLDGHDLKSLQVKWL 747 (1560)
Q Consensus 670 ~g~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~--G~I~i~g~~i~~~~~~~l 747 (1560)
.+.|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|.++...+..
T Consensus 3 ~~~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~-- 77 (362)
T TIGR03258 3 CGGIRIDHLRVAYGA---NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPH-- 77 (362)
T ss_pred ceEEEEEEEEEEECC---eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHH--
Confidence 367999999999963 458999999999999999999999999999999999999999 9999999999776553
Q ss_pred hccEEEEecCCcCccc-cHHHHHhcCCCC--CCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHH
Q 000406 748 RTQIGMVGQEPILFAT-SILENVLMGKEN--ATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALAR 824 (1560)
Q Consensus 748 r~~i~~v~Q~~~lf~~-Tv~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialAR 824 (1560)
+++|+||+|++.+|+. ||+|||.|+... ...++..+ .+.+.++.+ |++...++.+.+|||||||||+|||
T Consensus 78 ~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~-----~v~~~l~~~--gL~~~~~~~~~~LSgGq~QRvaLAR 150 (362)
T TIGR03258 78 KRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAE-----RVADALKLV--GLGDAAAHLPAQLSGGMQQRIAIAR 150 (362)
T ss_pred HCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHhc--CCCchhhCChhhCCHHHHHHHHHHH
Confidence 5689999999999976 999999986431 12222221 122334443 5666677788899999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC---CcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhHhhh
Q 000406 825 AMIKDPRILLLDEPTSALDSESESIVQQAIDKISV---GRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLER 899 (1560)
Q Consensus 825 Al~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~---~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l~~~ 899 (1560)
||+.+|++||||||||+||+.++..+.+.|+++.+ |.|+|+|||+++.+.. ||+|++|++|++++.|+++++..+
T Consensus 151 AL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~ 229 (362)
T TIGR03258 151 AIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDA 229 (362)
T ss_pred HHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999999999999988743 7899999999999865 999999999999999999999764
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-39 Score=373.00 Aligned_cols=218 Identities=30% Similarity=0.464 Sum_probs=186.7
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccC-----CCccEEEECCEecCC--CCH
Q 000406 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYD-----PNQGKVMIEGVDLRE--INV 1385 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~-----p~~G~I~IdGvdi~~--i~l 1385 (1560)
-|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|+|++. |++|+|.+||.++.. .+.
T Consensus 10 ~l~i~~v~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 86 (264)
T PRK14243 10 VLRTENLNVYYGS---FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86 (264)
T ss_pred EEEEeeeEEEECC---EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence 4899999999963 359999999999999999999999999999999999986 479999999999853 455
Q ss_pred HHHhhceEEEcCCCCCCCccHHHHHhcCCCC--C---CHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHH
Q 000406 1386 KWLRKQTALVGQEPALFAGTIRDNIALGNPK--A---SWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQR 1460 (1560)
Q Consensus 1386 ~~LR~~I~~VpQdp~LF~gTIreNL~~g~~~--~---sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQR 1460 (1560)
..+|++++|+||++.+|+.|++||+.++... . .++++.++++.+++.+.+.. .....+.+||||||||
T Consensus 87 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq~qr 159 (264)
T PRK14243 87 VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKD-------KLKQSGLSLSGGQQQR 159 (264)
T ss_pred HHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHH-------HhcCCcccCCHHHHHH
Confidence 6788999999999999989999999875321 1 12345556666666544432 2344566899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHHHhh-cCEEEEEe---------CCEEEE
Q 000406 1461 IAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIRE-ANMIAVVR---------DGAVVE 1530 (1560)
Q Consensus 1461 LaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlsti~~-aDrIlVLd---------~G~IvE 1530 (1560)
++|||||+++|+||||||||++||+.+...+.+.|++..+++|||+|||+++.+.. ||||++|+ +|+|++
T Consensus 160 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~ 239 (264)
T PRK14243 160 LCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVE 239 (264)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 99999999999999999999999999999999999988777899999999999865 99999998 899999
Q ss_pred ecCHHHHHhh
Q 000406 1531 YGSHETLLAS 1540 (1560)
Q Consensus 1531 ~Gt~~eLl~~ 1540 (1560)
.|+++++.++
T Consensus 240 ~~~~~~~~~~ 249 (264)
T PRK14243 240 FDRTEKIFNS 249 (264)
T ss_pred eCCHHHHHhC
Confidence 9999999863
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=372.41 Aligned_cols=217 Identities=31% Similarity=0.506 Sum_probs=184.9
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCC-----CccEEEECCEecCCC--CH
Q 000406 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDP-----NQGKVMIEGVDLREI--NV 1385 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p-----~~G~I~IdGvdi~~i--~l 1385 (1560)
-|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||.++... +.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~ 79 (250)
T PRK14262 3 IIEIENFSAYYGE---KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDV 79 (250)
T ss_pred eEEEEeeEEEeCC---ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhH
Confidence 3899999999963 3599999999999999999999999999999999999984 899999999998753 34
Q ss_pred HHHhhceEEEcCCCCCCCccHHHHHhcCCC---CCC----HHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHH
Q 000406 1386 KWLRKQTALVGQEPALFAGTIRDNIALGNP---KAS----WAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQK 1458 (1560)
Q Consensus 1386 ~~LR~~I~~VpQdp~LF~gTIreNL~~g~~---~~s----d~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQr 1458 (1560)
..+|+.++|+||++.+|..|++||+.++.. ... ++++.++++..++.+.+. ........+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~ 152 (250)
T PRK14262 80 TEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVK-------SELNKPGTRLSGGQQ 152 (250)
T ss_pred HHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhH-------HHHhCChhhcCHHHH
Confidence 567889999999999999999999986421 111 223455555555543221 223455668999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHH
Q 000406 1459 QRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETL 1537 (1560)
Q Consensus 1459 QRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eL 1537 (1560)
||++|||||+++|+||||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 153 qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14262 153 QRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREI 232 (250)
T ss_pred HHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999999999999988778999999999998765 999999999999999999999
Q ss_pred Hh
Q 000406 1538 LA 1539 (1560)
Q Consensus 1538 l~ 1539 (1560)
.+
T Consensus 233 ~~ 234 (250)
T PRK14262 233 VE 234 (250)
T ss_pred Hh
Confidence 86
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=382.46 Aligned_cols=212 Identities=25% Similarity=0.411 Sum_probs=182.4
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhhce
Q 000406 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQT 1392 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~~I 1392 (1560)
.|+++||+++|++ ..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.|+|.|+...+ ...|++|
T Consensus 7 ~i~i~~l~k~~~~---~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~i 82 (306)
T PRK13537 7 PIDFRNVEKRYGD---KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRV 82 (306)
T ss_pred eEEEEeEEEEECC---eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcE
Confidence 5999999999963 46999999999999999999999999999999999999999999999999997755 4578999
Q ss_pred EEEcCCCCCCC-ccHHHHHhcCCC--CCCHHHH----HHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 000406 1393 ALVGQEPALFA-GTIRDNIALGNP--KASWAEI----EEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIAR 1465 (1560)
Q Consensus 1393 ~~VpQdp~LF~-gTIreNL~~g~~--~~sd~eI----~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLAR 1465 (1560)
+||||++.+|. .|++|||.+... ..+..+. .++++..+ ++...+++++ +||||||||++|||
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~~~~~~~----~LS~G~~qrl~la~ 151 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAK-------LENKADAKVG----ELSGGMKRRLTLAR 151 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC-------CchHhcCchh----hCCHHHHHHHHHHH
Confidence 99999999886 699999985321 1232322 23333322 3344556554 69999999999999
Q ss_pred HHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHHHh
Q 000406 1466 AILKGSRVLLLDEASSALDLESEKHVQDALRKVS-KRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLA 1539 (1560)
Q Consensus 1466 ALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~-~~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eLl~ 1539 (1560)
||+.+|++|||||||++||+.+.+.+++.|+++. +++|+|++||+++.+.. ||||++|++|++++.|+++++.+
T Consensus 152 aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 227 (306)
T PRK13537 152 ALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIE 227 (306)
T ss_pred HHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999875 47899999999999976 99999999999999999999976
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-40 Score=368.91 Aligned_cols=216 Identities=29% Similarity=0.475 Sum_probs=180.3
Q ss_pred EEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHH-HhccE
Q 000406 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKW-LRTQI 751 (1560)
Q Consensus 673 i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~-lr~~i 751 (1560)
|+++||+++|+. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (222)
T cd03224 1 LEVENLNAGYGK---SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGI 77 (222)
T ss_pred CEEeeEEeecCC---eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCe
Confidence 578999999963 35899999999999999999999999999999999999999999999999998776554 36679
Q ss_pred EEEecCCcCccc-cHHHHHhcCCCCCCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHHhccCC
Q 000406 752 GMVGQEPILFAT-SILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDP 830 (1560)
Q Consensus 752 ~~v~Q~~~lf~~-Tv~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARAl~~~p 830 (1560)
+|++|++.+|+. |++||+.++.......+..+ .+.+.++.++ +++...+..+.+||||||||++|||||+.+|
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~-----~~~~~l~~~~-~l~~~~~~~~~~LS~G~~qrv~laral~~~p 151 (222)
T cd03224 78 GYVPEGRRIFPELTVEENLLLGAYARRRAKRKA-----RLERVYELFP-RLKERRKQLAGTLSGGEQQMLAIARALMSRP 151 (222)
T ss_pred EEeccccccCCCCcHHHHHHHHhhhcCchhHHH-----HHHHHHHHHH-hhhhhhhCchhhCCHHHHHHHHHHHHHhcCC
Confidence 999999999986 99999988643221111111 1112222221 2334456677899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhHh
Q 000406 831 RILLLDEPTSALDSESESIVQQAIDKIS-VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLL 897 (1560)
Q Consensus 831 ~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l~ 897 (1560)
++|||||||++||+.++..+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 152 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 152 KLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred CEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 9999999999999999999999998874 58999999999999866 9999999999999999887764
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=365.76 Aligned_cols=203 Identities=36% Similarity=0.551 Sum_probs=172.8
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhhceE
Q 000406 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTA 1393 (1560)
Q Consensus 1314 I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~~I~ 1393 (1560)
|+++||+++|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+.. +++++
T Consensus 1 i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~ 75 (213)
T cd03301 1 VELENVTKRFGN---VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIA 75 (213)
T ss_pred CEEEeeEEEECC---eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEE
Confidence 578999999964 3599999999999999999999999999999999999999999999999999766543 46899
Q ss_pred EEcCCCCCCC-ccHHHHHhcCCC--CCCH----HHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 000406 1394 LVGQEPALFA-GTIRDNIALGNP--KASW----AEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARA 1466 (1560)
Q Consensus 1394 ~VpQdp~LF~-gTIreNL~~g~~--~~sd----~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLARA 1466 (1560)
|+||++.+|. .|++||+.++.. .... +++.++++..++.++. ......||||||||++||||
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qr~~lara 144 (213)
T cd03301 76 MVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLL-----------DRKPKQLSGGQRQRVALGRA 144 (213)
T ss_pred EEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHH-----------hCChhhCCHHHHHHHHHHHH
Confidence 9999999885 699999986421 1122 2344445555554433 33345799999999999999
Q ss_pred HccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc--CCceEEEEecChHHHhh-cCEEEEEeCCEEEEec
Q 000406 1467 ILKGSRVLLLDEASSALDLESEKHVQDALRKVS--KRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYG 1532 (1560)
Q Consensus 1467 LLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~--~~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~G 1532 (1560)
|+++|+||||||||++||+.+.+.+.+.|++.. .++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 145 IVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 999999999999999999999999999999875 37899999999999876 9999999999999876
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=389.19 Aligned_cols=216 Identities=30% Similarity=0.495 Sum_probs=184.3
Q ss_pred cEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHHHhccE
Q 000406 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQI 751 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 751 (1560)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++...+. .+++|
T Consensus 2 ~L~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 76 (353)
T PRK10851 2 SIEIANIKKSFGR---TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKV 76 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCE
Confidence 4889999999973 458999999999999999999999999999999999999999999999999976554 35689
Q ss_pred EEEecCCcCccc-cHHHHHhcCCCC------CCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHH
Q 000406 752 GMVGQEPILFAT-SILENVLMGKEN------ATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALAR 824 (1560)
Q Consensus 752 ~~v~Q~~~lf~~-Tv~eNi~~g~~~------~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialAR 824 (1560)
+||+|++.+|+. ||+|||.++... .+.++..+ .+.+.++.+ |+.......+.+||||||||++|||
T Consensus 77 ~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~LSgGq~QRvalAr 149 (353)
T PRK10851 77 GFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKA-----KVTQLLEMV--QLAHLADRYPAQLSGGQKQRVALAR 149 (353)
T ss_pred EEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHH-----HHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHH
Confidence 999999999985 999999987431 11222111 122334443 5555566778899999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhHhhh
Q 000406 825 AMIKDPRILLLDEPTSALDSESESIVQQAIDKISV--GRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLER 899 (1560)
Q Consensus 825 Al~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l~~~ 899 (1560)
||+.+|++|||||||++||+.++..+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|++++.|++++++.+
T Consensus 150 AL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~~ 227 (353)
T PRK10851 150 ALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWRE 227 (353)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999999999999998743 7899999999999866 999999999999999999998764
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=372.84 Aligned_cols=221 Identities=34% Similarity=0.550 Sum_probs=182.8
Q ss_pred EEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCcc---HHHHhc
Q 000406 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQ---VKWLRT 749 (1560)
Q Consensus 673 i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~---~~~lr~ 749 (1560)
|+++|++++|++ ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+ ...+++
T Consensus 1 l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCC--ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence 478999999964 145899999999999999999999999999999999999999999999999988765 456778
Q ss_pred cEEEEecCCcCcc-ccHHHHHhcCCCCCC--HHHH---HHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHH
Q 000406 750 QIGMVGQEPILFA-TSILENVLMGKENAT--MKEA---VAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALA 823 (1560)
Q Consensus 750 ~i~~v~Q~~~lf~-~Tv~eNi~~g~~~~~--~~~~---~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialA 823 (1560)
.++|+||++.+|. .|++||+.++..... .... ........+.+.++.+ |+....+..+.+||||||||++||
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la 156 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERV--GLLDKAYQRADQLSGGQQQRVAIA 156 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHc--CChhhhCCCcccCCHHHHHHHHHH
Confidence 8999999998887 599999987532100 0000 0000111223344444 555556777889999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhHh
Q 000406 824 RAMIKDPRILLLDEPTSALDSESESIVQQAIDKIS--VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLL 897 (1560)
Q Consensus 824 RAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l~ 897 (1560)
|||+.+|+||||||||++||+.+...+.+.|+++. .|+|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 157 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (241)
T cd03256 157 RALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAELT 233 (241)
T ss_pred HHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHHHhh
Confidence 99999999999999999999999999999999874 38999999999999985 9999999999999999988763
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-39 Score=373.10 Aligned_cols=218 Identities=28% Similarity=0.449 Sum_probs=185.6
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCC-----CccEEEECCEecCCCC-HH
Q 000406 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDP-----NQGKVMIEGVDLREIN-VK 1386 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p-----~~G~I~IdGvdi~~i~-l~ 1386 (1560)
.++++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||.++...+ ..
T Consensus 21 ~l~i~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 97 (276)
T PRK14271 21 AMAAVNLTLGFAG---KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVL 97 (276)
T ss_pred EEEEeeEEEEECC---EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhH
Confidence 5899999999963 4699999999999999999999999999999999999986 6999999999998764 45
Q ss_pred HHhhceEEEcCCCCCCCccHHHHHhcCCC---CCCHHHHHH----HHHHHhHHHHHHhCCCCccccccCCCCCCChHHHH
Q 000406 1387 WLRKQTALVGQEPALFAGTIRDNIALGNP---KASWAEIEE----AAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQ 1459 (1560)
Q Consensus 1387 ~LR~~I~~VpQdp~LF~gTIreNL~~g~~---~~sd~eI~~----al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQ 1459 (1560)
.+|++++|+||++.+|+.|+++|+.++.. ..+++++.+ +++..++ ...+++.+.....+|||||||
T Consensus 98 ~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~l~~~~~~LSgGq~q 170 (276)
T PRK14271 98 EFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGL-------WDAVKDRLSDSPFRLSGGQQQ 170 (276)
T ss_pred HHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCC-------CchhhhHhhCCcccCCHHHHH
Confidence 67889999999999999999999986521 124444332 2222222 222223445667789999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHHH
Q 000406 1460 RIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLL 1538 (1560)
Q Consensus 1460 RLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eLl 1538 (1560)
|++|||||+.+|+||||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||||++|++|+|++.|+++++.
T Consensus 171 rl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 250 (276)
T PRK14271 171 LLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLF 250 (276)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999988767899999999999876 9999999999999999999998
Q ss_pred hh
Q 000406 1539 AS 1540 (1560)
Q Consensus 1539 ~~ 1540 (1560)
+.
T Consensus 251 ~~ 252 (276)
T PRK14271 251 SS 252 (276)
T ss_pred hC
Confidence 73
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-39 Score=376.00 Aligned_cols=213 Identities=30% Similarity=0.517 Sum_probs=182.8
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCC-HHHHhhce
Q 000406 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREIN-VKWLRKQT 1392 (1560)
Q Consensus 1314 I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~-l~~LR~~I 1392 (1560)
++++||+++|+. ..++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+ ...+++.+
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 2 IRLENVSYSYPD--GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred EEEEEEEEEcCC--CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence 789999999963 235999999999999999999999999999999999999999999999999998775 46788899
Q ss_pred EEEcCCCC--CCCccHHHHHhcCCCC--CCH----HHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 000406 1393 ALVGQEPA--LFAGTIRDNIALGNPK--ASW----AEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIA 1464 (1560)
Q Consensus 1393 ~~VpQdp~--LF~gTIreNL~~g~~~--~sd----~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLA 1464 (1560)
+|+||+|. ++..|++|||.++... .+. +++.++++..++.++ .......||||||||++||
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G~~qrv~la 148 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKY-----------RHRSPKTLSGGQGQCVALA 148 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHH-----------hcCCcccCCHHHHHHHHHH
Confidence 99999985 6778999999875321 222 234444444444433 3334468999999999999
Q ss_pred HHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCceEEEEecChHHHhhcCEEEEEeCCEEEEecCHHHHHh
Q 000406 1465 RAILKGSRVLLLDEASSALDLESEKHVQDALRKVS-KRATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETLLA 1539 (1560)
Q Consensus 1465 RALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~-~~~TvI~IAHRlsti~~aDrIlVLd~G~IvE~Gt~~eLl~ 1539 (1560)
|||+.+|+||||||||++||+.+...+.+.|+++. +++|+|++||+++.+..||+|++|++|++++.|+++++..
T Consensus 149 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 224 (274)
T PRK13644 149 GILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLS 224 (274)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhc
Confidence 99999999999999999999999999999998864 4789999999999998899999999999999999999875
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=373.79 Aligned_cols=218 Identities=29% Similarity=0.471 Sum_probs=185.8
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCC-----CccEEEECCEecCC--CCH
Q 000406 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDP-----NQGKVMIEGVDLRE--INV 1385 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p-----~~G~I~IdGvdi~~--i~l 1385 (1560)
.|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||.++.. .+.
T Consensus 7 ~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (259)
T PRK14260 7 AIKVKDLSFYYNT---SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRINI 83 (259)
T ss_pred eEEEEEEEEEECC---eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccch
Confidence 5899999999963 3599999999999999999999999999999999999985 48999999999864 445
Q ss_pred HHHhhceEEEcCCCCCCCccHHHHHhcCCC------CCC-HHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHH
Q 000406 1386 KWLRKQTALVGQEPALFAGTIRDNIALGNP------KAS-WAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQK 1458 (1560)
Q Consensus 1386 ~~LR~~I~~VpQdp~LF~gTIreNL~~g~~------~~s-d~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQr 1458 (1560)
..+|+.++|+||++.+|+.|++||+.++.. ... ++.+.++++.+++.+++.. .....+..||||||
T Consensus 84 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~G~~ 156 (259)
T PRK14260 84 NRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKD-------KLNKSALGLSGGQQ 156 (259)
T ss_pred HhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhh-------HhcCCcccCCHHHH
Confidence 678889999999999999999999986421 111 2334566666666443322 22345568999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHHHhh-cCEEEEEe-----CCEEEEec
Q 000406 1459 QRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIRE-ANMIAVVR-----DGAVVEYG 1532 (1560)
Q Consensus 1459 QRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlsti~~-aDrIlVLd-----~G~IvE~G 1532 (1560)
||+||||||+++|+||||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||++++|+ +|++++.|
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~ 236 (259)
T PRK14260 157 QRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFG 236 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeC
Confidence 9999999999999999999999999999999999999988777899999999999876 99999998 59999999
Q ss_pred CHHHHHhh
Q 000406 1533 SHETLLAS 1540 (1560)
Q Consensus 1533 t~~eLl~~ 1540 (1560)
+++++.+.
T Consensus 237 ~~~~~~~~ 244 (259)
T PRK14260 237 VTTQIFSN 244 (259)
T ss_pred CHHHHhcC
Confidence 99999863
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-39 Score=371.17 Aligned_cols=217 Identities=30% Similarity=0.460 Sum_probs=184.6
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCC-----CccEEEECCEecCCC--CH
Q 000406 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDP-----NQGKVMIEGVDLREI--NV 1385 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p-----~~G~I~IdGvdi~~i--~l 1385 (1560)
.|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||.++... +.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 4 KMESKNLNLWYGE---KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred EEEEEEeEEEECC---eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 4899999999963 3599999999999999999999999999999999999875 799999999999653 34
Q ss_pred HHHhhceEEEcCCCCCCCccHHHHHhcCCC--CC-CH----HHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHH
Q 000406 1386 KWLRKQTALVGQEPALFAGTIRDNIALGNP--KA-SW----AEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQK 1458 (1560)
Q Consensus 1386 ~~LR~~I~~VpQdp~LF~gTIreNL~~g~~--~~-sd----~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQr 1458 (1560)
..+|+.++|+||++.+|+.|++||+.++.. .. +. +++.++++.+++.+.+. .........||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 153 (251)
T PRK14270 81 VELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVK-------DDLKKSALKLSGGQQ 153 (251)
T ss_pred HHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhh-------hHhhCCcccCCHHHH
Confidence 567889999999999999999999986421 11 11 23445555555432221 223345568999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHH
Q 000406 1459 QRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETL 1537 (1560)
Q Consensus 1459 QRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eL 1537 (1560)
||++||||++++|+||||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||||++|++|++++.|+++++
T Consensus 154 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14270 154 QRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKI 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988777899999999999876 999999999999999999999
Q ss_pred Hh
Q 000406 1538 LA 1539 (1560)
Q Consensus 1538 l~ 1539 (1560)
..
T Consensus 234 ~~ 235 (251)
T PRK14270 234 FL 235 (251)
T ss_pred hc
Confidence 86
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=371.74 Aligned_cols=217 Identities=32% Similarity=0.512 Sum_probs=182.6
Q ss_pred cEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCC-----ccEEEECCeecCCc--cH
Q 000406 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPT-----KGLITLDGHDLKSL--QV 744 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~-----~G~I~i~g~~i~~~--~~ 744 (1560)
.|+++||+++|+. ..+|+|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.++... +.
T Consensus 1 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~ 77 (247)
T TIGR00972 1 AIEIENLNLFYGE---KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDV 77 (247)
T ss_pred CEEEEEEEEEECC---eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccch
Confidence 3789999999973 35899999999999999999999999999999999999998 99999999998753 34
Q ss_pred HHHhccEEEEecCCcCccccHHHHHhcCCCC---CCHHHHHHHHHHhhhHHHHHhCCCCCC----cccCCCCCCCChHHH
Q 000406 745 KWLRTQIGMVGQEPILFATSILENVLMGKEN---ATMKEAVAACKAASAHSFISELPLGYD----TQVGDRGTQLSGGQK 817 (1560)
Q Consensus 745 ~~lr~~i~~v~Q~~~lf~~Tv~eNi~~g~~~---~~~~~~~~~~~~~~~~~~i~~l~~gl~----t~~~~~g~~LSgGQr 817 (1560)
..+++.|+|+||++.+|+.|++||+.++... ...++..+ .+.+.++.+ |+. ...+..+.+||||||
T Consensus 78 ~~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~~~~LSgG~~ 150 (247)
T TIGR00972 78 VELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDE-----IVEESLKKA--ALWDEVKDRLHDSALGLSGGQQ 150 (247)
T ss_pred HHHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHH-----HHHHHHHHc--CCCcchhhHhhCCcccCCHHHH
Confidence 5667889999999999999999999875321 11111111 112223333 333 445667789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhH
Q 000406 818 QRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQL 896 (1560)
Q Consensus 818 QRialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l 896 (1560)
||++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 151 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 230 (247)
T TIGR00972 151 QRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQI 230 (247)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988667899999999998865 999999999999999999887
Q ss_pred hh
Q 000406 897 LE 898 (1560)
Q Consensus 897 ~~ 898 (1560)
..
T Consensus 231 ~~ 232 (247)
T TIGR00972 231 FT 232 (247)
T ss_pred Hh
Confidence 64
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=369.40 Aligned_cols=212 Identities=26% Similarity=0.406 Sum_probs=179.3
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHH-Hhhce
Q 000406 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKW-LRKQT 1392 (1560)
Q Consensus 1314 I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~-LR~~I 1392 (1560)
|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+... .++.+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (230)
T TIGR03410 1 LEVSNLNVYYGQ---SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI 77 (230)
T ss_pred CEEEeEEEEeCC---eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCe
Confidence 578999999963 35999999999999999999999999999999999999999999999999998877654 46789
Q ss_pred EEEcCCCCCCCc-cHHHHHhcCCCCC--CHHH-HHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHc
Q 000406 1393 ALVGQEPALFAG-TIRDNIALGNPKA--SWAE-IEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAIL 1468 (1560)
Q Consensus 1393 ~~VpQdp~LF~g-TIreNL~~g~~~~--sd~e-I~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLARALL 1468 (1560)
+|+||++.+|.. |+++|+.++.... ..++ ..++++..+ +++........+||||||||++|||||+
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~----------~l~~~~~~~~~~LS~G~~qrv~la~al~ 147 (230)
T TIGR03410 78 AYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFP----------VLKEMLGRRGGDLSGGQQQQLAIARALV 147 (230)
T ss_pred EEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHH----------hHHHHhhCChhhCCHHHHHHHHHHHHHh
Confidence 999999999986 9999998653211 1111 222232222 1222334445579999999999999999
Q ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHHH
Q 000406 1469 KGSRVLLLDEASSALDLESEKHVQDALRKVSK--RATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLL 1538 (1560)
Q Consensus 1469 r~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~--~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eLl 1538 (1560)
++|+||||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 148 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~~ 220 (230)
T TIGR03410 148 TRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELD 220 (230)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHcC
Confidence 99999999999999999999999999998754 6899999999999986 9999999999999999999874
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-39 Score=381.33 Aligned_cols=230 Identities=23% Similarity=0.415 Sum_probs=186.3
Q ss_pred cEEEEEEEEEcCCCC-CccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCC---ccEEEECCEecCCCCHHHH
Q 000406 1313 GIELKMVTFTYPSRP-EVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPN---QGKVMIEGVDLREINVKWL 1388 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~~-~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~---~G~I~IdGvdi~~i~l~~L 1388 (1560)
-++++||++.|+.+. ...+|+||||+|++||++||||+||||||||+++|+|+++|. +|+|.+||.|+..++.+++
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 489999999996421 246999999999999999999999999999999999999996 9999999999999987765
Q ss_pred h----hceEEEcCCC--CCCC-ccHHHHHhcC---CCCCCHHH----HHHHHHHHhHHHHHHhCCCCccccccCCCCCCC
Q 000406 1389 R----KQTALVGQEP--ALFA-GTIRDNIALG---NPKASWAE----IEEAAEEAYIHKFISSLPQGYETQVGESGVQLS 1454 (1560)
Q Consensus 1389 R----~~I~~VpQdp--~LF~-gTIreNL~~g---~~~~sd~e----I~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LS 1454 (1560)
| +.|+||||+| .+++ .|+.+|+... ....+.++ +.++++.++ ++++. ..++..+.+||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vg-------L~~~~-~~~~~~p~~LS 163 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVK-------MPEAR-KRMKMYPHEFS 163 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC-------CCChH-HHhcCCcccCC
Confidence 4 4799999999 4554 4787776421 11123333 223333322 34332 23556778899
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CceEEEEecChHHHhh-cCEEEEEeCCEEEEe
Q 000406 1455 GGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSK--RATTIVVAHRLSTIRE-ANMIAVVRDGAVVEY 1531 (1560)
Q Consensus 1455 GGQrQRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~--~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~ 1531 (1560)
||||||++|||||+.+|+|||+||||++||..+...|.+.|+++.+ +.|+|+|||+++.+.. ||||+||.+|+|+|.
T Consensus 164 gG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~ 243 (330)
T PRK09473 164 GGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEY 243 (330)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999998754 6899999999999975 999999999999999
Q ss_pred cCHHHHHhhccChHHH-HHHH
Q 000406 1532 GSHETLLASHLNGVYA-SLVR 1551 (1560)
Q Consensus 1532 Gt~~eLl~~~~~g~y~-~l~~ 1551 (1560)
|++++++++. ...|. .|+.
T Consensus 244 g~~~~i~~~p-~~pyt~~l~~ 263 (330)
T PRK09473 244 GNARDVFYQP-SHPYSIGLLN 263 (330)
T ss_pred CCHHHHHhCC-CCHHHHHHHH
Confidence 9999999743 33454 4544
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=389.76 Aligned_cols=216 Identities=31% Similarity=0.523 Sum_probs=184.3
Q ss_pred cEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHHHhccE
Q 000406 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQI 751 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 751 (1560)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...++. ++.|
T Consensus 14 ~L~l~~l~~~~~~---~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 88 (375)
T PRK09452 14 LVELRGISKSFDG---KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHV 88 (375)
T ss_pred eEEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 5999999999963 4589999999999999999999999999999999999999999999999999876654 4679
Q ss_pred EEEecCCcCccc-cHHHHHhcCCCC--CCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHHhcc
Q 000406 752 GMVGQEPILFAT-SILENVLMGKEN--ATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIK 828 (1560)
Q Consensus 752 ~~v~Q~~~lf~~-Tv~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARAl~~ 828 (1560)
+||+|++.+|+. ||+|||.|+... ....+..+ .+.+.++.+ |+.......+.+|||||||||+|||||++
T Consensus 89 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~p~~LSgGq~QRVaLARaL~~ 161 (375)
T PRK09452 89 NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITP-----RVMEALRMV--QLEEFAQRKPHQLSGGQQQRVAIARAVVN 161 (375)
T ss_pred EEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHH-----HHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 999999999976 999999987531 12222111 111223332 55555667778999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhHhhh
Q 000406 829 DPRILLLDEPTSALDSESESIVQQAIDKIS--VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLER 899 (1560)
Q Consensus 829 ~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l~~~ 899 (1560)
+|++||||||||+||+.++..+.+.|+++. .|.|+|+|||+++.+.. ||+|++|++|+|++.|++++++.+
T Consensus 162 ~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~ 235 (375)
T PRK09452 162 KPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEE 235 (375)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999999999874 38999999999999765 999999999999999999998764
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=389.57 Aligned_cols=217 Identities=31% Similarity=0.486 Sum_probs=184.7
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhhce
Q 000406 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQT 1392 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~~I 1392 (1560)
.|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.+||.++..++. .|+.+
T Consensus 19 ~l~l~~v~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 93 (377)
T PRK11607 19 LLEIRNLTKSFDG---QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRPI 93 (377)
T ss_pred eEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCCE
Confidence 4999999999963 359999999999999999999999999999999999999999999999999987764 47789
Q ss_pred EEEcCCCCCCCc-cHHHHHhcCCC--CCCHH----HHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 000406 1393 ALVGQEPALFAG-TIRDNIALGNP--KASWA----EIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIAR 1465 (1560)
Q Consensus 1393 ~~VpQdp~LF~g-TIreNL~~g~~--~~sd~----eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLAR 1465 (1560)
+||+|++.||+. |++|||.++.. ..+.+ ++.++++..++.++.. ....+||||||||+||||
T Consensus 94 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~-----------~~~~~LSgGq~QRVaLAR 162 (377)
T PRK11607 94 NMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAK-----------RKPHQLSGGQRQRVALAR 162 (377)
T ss_pred EEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhc-----------CChhhCCHHHHHHHHHHH
Confidence 999999999975 99999998632 22322 3444555555543333 334579999999999999
Q ss_pred HHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc--CCceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHHHhhcc
Q 000406 1466 AILKGSRVLLLDEASSALDLESEKHVQDALRKVS--KRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLASHL 1542 (1560)
Q Consensus 1466 ALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~--~~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eLl~~~~ 1542 (1560)
||+++|+|||||||||+||..+...+.+.|+++. .+.|+|+|||+++.+.. ||||++|++|+|++.|++++++.+ .
T Consensus 163 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~-p 241 (377)
T PRK11607 163 SLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEH-P 241 (377)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhC-C
Confidence 9999999999999999999999999998888764 36899999999998765 999999999999999999999974 3
Q ss_pred ChHH
Q 000406 1543 NGVY 1546 (1560)
Q Consensus 1543 ~g~y 1546 (1560)
...|
T Consensus 242 ~~~~ 245 (377)
T PRK11607 242 TTRY 245 (377)
T ss_pred ccHH
Confidence 4444
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-39 Score=373.99 Aligned_cols=225 Identities=32% Similarity=0.435 Sum_probs=184.9
Q ss_pred EEEEEEEEEcCCC------CCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHH
Q 000406 1314 IELKMVTFTYPSR------PEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKW 1387 (1560)
Q Consensus 1314 I~~~nVsf~Y~~~------~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~ 1387 (1560)
|+++||++.|+.. .+.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++..++...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence 7899999999632 1346999999999999999999999999999999999999999999999999998876543
Q ss_pred ---HhhceEEEcCCCC--CC-CccHHHHHhcCCC---CCC----HHHHHHHHHHHhHHHHHHhCCCCcc-ccccCCCCCC
Q 000406 1388 ---LRKQTALVGQEPA--LF-AGTIRDNIALGNP---KAS----WAEIEEAAEEAYIHKFISSLPQGYE-TQVGESGVQL 1453 (1560)
Q Consensus 1388 ---LR~~I~~VpQdp~--LF-~gTIreNL~~g~~---~~s----d~eI~~al~~a~l~~~I~~Lp~Gld-t~Vge~G~~L 1453 (1560)
+|+.|+|+||++. ++ ..|++|||.+... ... ++++.++++.. |++ ......+..|
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~~L 151 (265)
T TIGR02769 83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMV-----------GLRSEDADKLPRQL 151 (265)
T ss_pred HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-----------CCChhhhhCChhhC
Confidence 6788999999983 44 4799999964210 111 12333333333 332 2234455689
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CceEEEEecChHHHhh-cCEEEEEeCCEEEE
Q 000406 1454 SGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSK--RATTIVVAHRLSTIRE-ANMIAVVRDGAVVE 1530 (1560)
Q Consensus 1454 SGGQrQRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~--~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE 1530 (1560)
|||||||++|||||+.+|+||||||||++||+.+...+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++
T Consensus 152 SgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 231 (265)
T TIGR02769 152 SGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVE 231 (265)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEE
Confidence 99999999999999999999999999999999999999999998753 7899999999999975 99999999999999
Q ss_pred ecCHHHHHhhccChHHHHHH
Q 000406 1531 YGSHETLLASHLNGVYASLV 1550 (1560)
Q Consensus 1531 ~Gt~~eLl~~~~~g~y~~l~ 1550 (1560)
.|++++++. .++..+..+.
T Consensus 232 ~g~~~~~~~-~~~~~~~~~~ 250 (265)
T TIGR02769 232 ECDVAQLLS-FKHPAGRNLQ 250 (265)
T ss_pred ECCHHHHcC-CCCHHHHHHH
Confidence 999999986 3444555454
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=370.14 Aligned_cols=215 Identities=32% Similarity=0.526 Sum_probs=181.3
Q ss_pred cEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHHHhccE
Q 000406 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQI 751 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 751 (1560)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++++
T Consensus 2 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i 76 (239)
T cd03296 2 SIEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNV 76 (239)
T ss_pred EEEEEeEEEEECC---EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccce
Confidence 3789999999964 459999999999999999999999999999999999999999999999999875543 25679
Q ss_pred EEEecCCcCcc-ccHHHHHhcCCCCC------CHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHH
Q 000406 752 GMVGQEPILFA-TSILENVLMGKENA------TMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALAR 824 (1560)
Q Consensus 752 ~~v~Q~~~lf~-~Tv~eNi~~g~~~~------~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialAR 824 (1560)
+||+|+|.+|. .|++||+.++.... ...+.. ..+.+.++.+ |++......+.+||||||||++|||
T Consensus 77 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~ 149 (239)
T cd03296 77 GFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIR-----AKVHELLKLV--QLDWLADRYPAQLSGGQRQRVALAR 149 (239)
T ss_pred EEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHH-----HHHHHHHHHc--CChhhhhcChhhCCHHHHHHHHHHH
Confidence 99999999886 59999998764211 111111 1122334444 5555566777899999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhHhh
Q 000406 825 AMIKDPRILLLDEPTSALDSESESIVQQAIDKIS--VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLE 898 (1560)
Q Consensus 825 Al~~~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l~~ 898 (1560)
||+.+|++|||||||++||+.+++.+.+.|+++. .|+|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 150 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (239)
T cd03296 150 ALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYD 226 (239)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhc
Confidence 9999999999999999999999999999999874 37999999999998765 99999999999999999988764
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-39 Score=375.50 Aligned_cols=219 Identities=30% Similarity=0.490 Sum_probs=181.9
Q ss_pred EEEEEEEEEcCCCC--CccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCC----CHHH
Q 000406 1314 IELKMVTFTYPSRP--EVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREI----NVKW 1387 (1560)
Q Consensus 1314 I~~~nVsf~Y~~~~--~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i----~l~~ 1387 (1560)
|+++||+++|+... ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++... +...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999997421 13599999999999999999999999999999999999999999999999998764 3567
Q ss_pred HhhceEEEcCCC--CCCCccHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHHhCCCCcc-ccccCCCCCCChHHHHHHH
Q 000406 1388 LRKQTALVGQEP--ALFAGTIRDNIALGNP--KASWAEIEEAAEEAYIHKFISSLPQGYE-TQVGESGVQLSGGQKQRIA 1462 (1560)
Q Consensus 1388 LR~~I~~VpQdp--~LF~gTIreNL~~g~~--~~sd~eI~~al~~a~l~~~I~~Lp~Gld-t~Vge~G~~LSGGQrQRLa 1462 (1560)
+|+.|+|+||++ .+|+.|++|||.++.. ..+.++..+. +.+++..+ |++ .........||||||||++
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~ 155 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEAL-----AREKLALV--GISESLFEKNPFELSGGQMRRVA 155 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCChhhhhCCcccCCHHHHHHHH
Confidence 888999999998 6888999999986421 1233333221 12222222 332 1234455689999999999
Q ss_pred HHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHHHh
Q 000406 1463 IARAILKGSRVLLLDEASSALDLESEKHVQDALRKVS-KRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLA 1539 (1560)
Q Consensus 1463 LARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~-~~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eLl~ 1539 (1560)
|||||+++|+||||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++++.|+++++++
T Consensus 156 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 234 (280)
T PRK13649 156 IAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQ 234 (280)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999999999864 37899999999999865 99999999999999999999875
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=367.61 Aligned_cols=205 Identities=35% Similarity=0.458 Sum_probs=173.2
Q ss_pred EEEEEEEEEcCCCCC-ccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhhce
Q 000406 1314 IELKMVTFTYPSRPE-VTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQT 1392 (1560)
Q Consensus 1314 I~~~nVsf~Y~~~~~-~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~~I 1392 (1560)
|+++|++++|+.... .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.. +++.+
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 578999999964111 469999999999999999999999999999999999999999999999999863 46789
Q ss_pred EEEcCCCCCCC-ccHHHHHhcCCC--CCC----HHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 000406 1393 ALVGQEPALFA-GTIRDNIALGNP--KAS----WAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIAR 1465 (1560)
Q Consensus 1393 ~~VpQdp~LF~-gTIreNL~~g~~--~~s----d~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLAR 1465 (1560)
+||||++.+|. .|++||+.++.. ... .+++.++++..++.++... ...+||||||||++|||
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrl~la~ 144 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENA-----------YPHQLSGGMRQRVALAR 144 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhC-----------CcccCCHHHHHHHHHHH
Confidence 99999999987 699999986421 111 2345555555555444333 33579999999999999
Q ss_pred HHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc--CCceEEEEecChHHHhh-cCEEEEEe--CCEEEEecCH
Q 000406 1466 AILKGSRVLLLDEASSALDLESEKHVQDALRKVS--KRATTIVVAHRLSTIRE-ANMIAVVR--DGAVVEYGSH 1534 (1560)
Q Consensus 1466 ALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~--~~~TvI~IAHRlsti~~-aDrIlVLd--~G~IvE~Gt~ 1534 (1560)
||+++|++|||||||++||+.+.+.+.+.|++.. .++|+|+|||+++.+.. ||+|++|+ +|+|++.++.
T Consensus 145 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 145 ALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 9999999999999999999999999999999864 37899999999998765 99999999 7999998764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=369.95 Aligned_cols=216 Identities=35% Similarity=0.575 Sum_probs=184.8
Q ss_pred cEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHHHhccE
Q 000406 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQI 751 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 751 (1560)
.|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+|+.+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 3 EIEFKEVSYSSFG---KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 4899999999963 3589999999999999999999999999999999999999999999999999877777778899
Q ss_pred EEEecCCcCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHHHHHhCCCCCC-cccCCCCCCCChHHHHHHHHHHHhccCC
Q 000406 752 GMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYD-TQVGDRGTQLSGGQKQRIALARAMIKDP 830 (1560)
Q Consensus 752 ~~v~Q~~~lf~~Tv~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~-t~~~~~g~~LSgGQrQRialARAl~~~p 830 (1560)
+|++|++.+|+.|++||+.++.......+ ..+.+.++.+ |+. ......+.+||||||||++|||||+++|
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~-------~~~~~~l~~~--~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p 150 (241)
T PRK14250 80 GMVFQQPHLFEGTVKDNIEYGPMLKGEKN-------VDVEYYLSIV--GLNKEYATRDVKNLSGGEAQRVSIARTLANNP 150 (241)
T ss_pred EEEecCchhchhhHHHHHhcchhhcCcHH-------HHHHHHHHHc--CCCHHHhhCCcccCCHHHHHHHHHHHHHhcCC
Confidence 99999999998999999987542111110 1122334443 443 2345667899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhHhhh
Q 000406 831 RILLLDEPTSALDSESESIVQQAIDKIS--VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLER 899 (1560)
Q Consensus 831 ~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l~~~ 899 (1560)
++|||||||++||+.+.+.+.+.|+++. .|+|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 151 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (241)
T PRK14250 151 EVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTN 222 (241)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999874 38999999999999875 999999999999999999988653
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=375.64 Aligned_cols=215 Identities=30% Similarity=0.453 Sum_probs=184.8
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhhce
Q 000406 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQT 1392 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~~I 1392 (1560)
.|+++||+++|++. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+...+|+++
T Consensus 7 ~l~i~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 7 IIVFKNVSFQYQSD-ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred eEEEEEEEEEcCCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 48999999999743 23589999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEcCCCC--CCCccHHHHHhcCCC--CCCH----HHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 000406 1393 ALVGQEPA--LFAGTIRDNIALGNP--KASW----AEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIA 1464 (1560)
Q Consensus 1393 ~~VpQdp~--LF~gTIreNL~~g~~--~~sd----~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLA 1464 (1560)
+|+||+|. ++..|+++|+.++.. .... +++.++++..++.++. .....+||||||||++||
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~la 154 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERA-----------DYEPNALSGGQKQRVAIA 154 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhh-----------hCCcccCCHHHHHHHHHH
Confidence 99999984 456689999987521 1222 2344445554443322 234457999999999999
Q ss_pred HHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CceEEEEecChHHHhhcCEEEEEeCCEEEEecCHHHHHh
Q 000406 1465 RAILKGSRVLLLDEASSALDLESEKHVQDALRKVSK--RATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETLLA 1539 (1560)
Q Consensus 1465 RALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~--~~TvI~IAHRlsti~~aDrIlVLd~G~IvE~Gt~~eLl~ 1539 (1560)
||++.+|+||||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+..||||++|++|+|++.|+++++.+
T Consensus 155 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 231 (269)
T PRK13648 155 GVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFD 231 (269)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhc
Confidence 999999999999999999999999999999998753 689999999999998899999999999999999999876
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-39 Score=381.75 Aligned_cols=230 Identities=26% Similarity=0.358 Sum_probs=184.2
Q ss_pred EEEEEEEEEcCCCCC-ccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccC----CCccEEEECCEecCCCCHHHH
Q 000406 1314 IELKMVTFTYPSRPE-VTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYD----PNQGKVMIEGVDLREINVKWL 1388 (1560)
Q Consensus 1314 I~~~nVsf~Y~~~~~-~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~----p~~G~I~IdGvdi~~i~l~~L 1388 (1560)
|+++||++.|+.+.. ..+|+||||+|++||++||||+||||||||+++|+|+++ |++|+|.+||.|+..++.+.+
T Consensus 4 L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~ 83 (326)
T PRK11022 4 LNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKER 83 (326)
T ss_pred EEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHH
Confidence 799999999964322 369999999999999999999999999999999999997 489999999999999987766
Q ss_pred hh----ceEEEcCCCC--CCC-ccHHHHH----hcCCC---CCCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCC
Q 000406 1389 RK----QTALVGQEPA--LFA-GTIRDNI----ALGNP---KASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLS 1454 (1560)
Q Consensus 1389 R~----~I~~VpQdp~--LF~-gTIreNL----~~g~~---~~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LS 1454 (1560)
++ .|+||||+|. +++ -|+.+|+ ..... ....+++.++++.+++.+.. ..+.....+||
T Consensus 84 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~--------~~l~~~p~~LS 155 (326)
T PRK11022 84 RNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPA--------SRLDVYPHQLS 155 (326)
T ss_pred HHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChH--------HHHhCCchhCC
Confidence 54 6999999995 443 3665554 33111 11123455666666553211 12334566899
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CceEEEEecChHHHh-hcCEEEEEeCCEEEEe
Q 000406 1455 GGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSK--RATTIVVAHRLSTIR-EANMIAVVRDGAVVEY 1531 (1560)
Q Consensus 1455 GGQrQRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~--~~TvI~IAHRlsti~-~aDrIlVLd~G~IvE~ 1531 (1560)
||||||++|||||+.+|+|||+||||++||+.+...|++.|+++.+ +.|+|+|||+++.+. .||||+||.+|+|+|.
T Consensus 156 gGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~ 235 (326)
T PRK11022 156 GGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVET 235 (326)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999998753 789999999999985 4999999999999999
Q ss_pred cCHHHHHhhccChHHHHHHH
Q 000406 1532 GSHETLLASHLNGVYASLVR 1551 (1560)
Q Consensus 1532 Gt~~eLl~~~~~g~y~~l~~ 1551 (1560)
|++++++++....+-..++.
T Consensus 236 g~~~~~~~~p~hpyt~~ll~ 255 (326)
T PRK11022 236 GKAHDIFRAPRHPYTQALLR 255 (326)
T ss_pred CCHHHHhhCCCChHHHHHHH
Confidence 99999997433333334443
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=376.88 Aligned_cols=216 Identities=29% Similarity=0.539 Sum_probs=182.5
Q ss_pred cEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHHHhccE
Q 000406 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQI 751 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 751 (1560)
.|+++|++++|+. ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...++++|
T Consensus 4 ~l~~~~l~~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKD--GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCC--CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 4899999999963 24599999999999999999999999999999999999999999999999999877777788899
Q ss_pred EEEecCC--cCccccHHHHHhcCCCC--CCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHHhc
Q 000406 752 GMVGQEP--ILFATSILENVLMGKEN--ATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMI 827 (1560)
Q Consensus 752 ~~v~Q~~--~lf~~Tv~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARAl~ 827 (1560)
+||+|+| .++..||+||+.++... ....+..+ .+.+.++.+ |+.........+||||||||++|||||+
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~LSgG~~qrv~laraL~ 154 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVER-----RVEEALKAV--RMWDFRDKPPYHLSYGQKKRVAIAGVLA 154 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHH-----HHHHHHHHC--CCHHHhcCChhhCCHHHHHHHHHHHHHH
Confidence 9999998 57788999999986321 12211111 112223332 4444455666799999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhH
Q 000406 828 KDPRILLLDEPTSALDSESESIVQQAIDKIS-VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQL 896 (1560)
Q Consensus 828 ~~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l 896 (1560)
.+|++|||||||++||+.+...+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 155 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 155 MDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 9999999999999999999999999998874 48999999999999855 999999999999999998654
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=366.03 Aligned_cols=207 Identities=35% Similarity=0.583 Sum_probs=174.1
Q ss_pred EEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHHHhccEE
Q 000406 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIG 752 (1560)
Q Consensus 673 i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~ 752 (1560)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .+++++
T Consensus 1 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~~i~ 75 (213)
T cd03259 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERRNIG 75 (213)
T ss_pred CeeeeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhccEE
Confidence 478999999963 458999999999999999999999999999999999999999999999999876543 456899
Q ss_pred EEecCCcCcc-ccHHHHHhcCCCC--CCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHHhccC
Q 000406 753 MVGQEPILFA-TSILENVLMGKEN--ATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKD 829 (1560)
Q Consensus 753 ~v~Q~~~lf~-~Tv~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARAl~~~ 829 (1560)
||||++.++. .|++||+.++... ...++..+ .+.+.++.+ |++...+....+||||||||++|||||+.+
T Consensus 76 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrl~la~al~~~ 148 (213)
T cd03259 76 MVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRA-----RVRELLELV--GLEGLLNRYPHELSGGQQQRVALARALARE 148 (213)
T ss_pred EEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHH-----HHHHHHHHc--CChhhhhcChhhCCHHHHHHHHHHHHHhcC
Confidence 9999998886 5999999875321 11111111 122344444 555556677789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCcccccc-CCEEEEEeCCeEEEec
Q 000406 830 PRILLLDEPTSALDSESESIVQQAIDKIS--VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIG 891 (1560)
Q Consensus 830 p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G 891 (1560)
|++|||||||++||+.++..+.+.|+++. .|+|||++||+++.+.. ||+|++|++|++++.|
T Consensus 149 p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 149 PSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999873 38999999999999866 9999999999998765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=363.73 Aligned_cols=201 Identities=36% Similarity=0.596 Sum_probs=171.2
Q ss_pred EEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhhceEE
Q 000406 1315 ELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTAL 1394 (1560)
Q Consensus 1315 ~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~~I~~ 1394 (1560)
+++||+++|+.. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+...+|+.++|
T Consensus 1 ~~~~l~~~~~~~-~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (211)
T cd03225 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGL 79 (211)
T ss_pred CceeEEEecCCC-CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceE
Confidence 478999999642 2469999999999999999999999999999999999999999999999999988888888999999
Q ss_pred EcCCC--CCCCccHHHHHhcCCC--CCCH----HHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 000406 1395 VGQEP--ALFAGTIRDNIALGNP--KASW----AEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARA 1466 (1560)
Q Consensus 1395 VpQdp--~LF~gTIreNL~~g~~--~~sd----~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLARA 1466 (1560)
+||++ .++..|++||+.++.. ..+. +++.++++..++.++ +......||||||||++||||
T Consensus 80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~lara 148 (211)
T cd03225 80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGL-----------RDRSPFTLSGGQKQRVAIAGV 148 (211)
T ss_pred EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhh-----------hcCCcccCCHHHHHHHHHHHH
Confidence 99998 3678899999986421 1122 233444444444433 333446799999999999999
Q ss_pred HccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC-CceEEEEecChHHHhh-cCEEEEEeCCE
Q 000406 1467 ILKGSRVLLLDEASSALDLESEKHVQDALRKVSK-RATTIVVAHRLSTIRE-ANMIAVVRDGA 1527 (1560)
Q Consensus 1467 LLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~-~~TvI~IAHRlsti~~-aDrIlVLd~G~ 1527 (1560)
|+++|++|||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|+
T Consensus 149 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 149 LAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 9999999999999999999999999999998753 7899999999999987 99999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=364.75 Aligned_cols=201 Identities=32% Similarity=0.533 Sum_probs=173.1
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHH---HHhh
Q 000406 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVK---WLRK 1390 (1560)
Q Consensus 1314 I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~---~LR~ 1390 (1560)
|+++|++++|+. +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++..++.. .+|+
T Consensus 2 l~~~~l~~~~~~--~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 2 IEFHNVSKAYPG--GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred EEEEeeeEEeCC--CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 789999999952 24699999999999999999999999999999999999999999999999999887643 4678
Q ss_pred ceEEEcCCCCCCC-ccHHHHHhcCCC------CCCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 000406 1391 QTALVGQEPALFA-GTIRDNIALGNP------KASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAI 1463 (1560)
Q Consensus 1391 ~I~~VpQdp~LF~-gTIreNL~~g~~------~~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaL 1463 (1560)
.++|+||++.+|. .|++||+.++.. ...+++++++++..++.+.+...| .+||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~l 148 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFP-----------EQLSGGEQQRVAI 148 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHH
Confidence 9999999999986 699999986411 112345666666666655443332 4799999999999
Q ss_pred HHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCceEEEEecChHHHhh-cCEEEEEeCCE
Q 000406 1464 ARAILKGSRVLLLDEASSALDLESEKHVQDALRKVS-KRATTIVVAHRLSTIRE-ANMIAVVRDGA 1527 (1560)
Q Consensus 1464 ARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~-~~~TvI~IAHRlsti~~-aDrIlVLd~G~ 1527 (1560)
||||+++|+||||||||++||+.+...+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|+
T Consensus 149 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 149 ARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 999999999999999999999999999999999864 47899999999999986 99999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-39 Score=371.62 Aligned_cols=217 Identities=30% Similarity=0.468 Sum_probs=183.0
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCC-----CccEEEECCEecCC--CCH
Q 000406 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDP-----NQGKVMIEGVDLRE--INV 1385 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p-----~~G~I~IdGvdi~~--i~l 1385 (1560)
.++++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||.++.. .+.
T Consensus 4 ~l~i~~v~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~ 80 (258)
T PRK14241 4 RIDVKDLNIYYGS---FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP 80 (258)
T ss_pred cEEEeeEEEEECC---EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccCh
Confidence 4899999999963 3599999999999999999999999999999999999974 69999999999853 445
Q ss_pred HHHhhceEEEcCCCCCCC-ccHHHHHhcCC---CCCC----HHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHH
Q 000406 1386 KWLRKQTALVGQEPALFA-GTIRDNIALGN---PKAS----WAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQ 1457 (1560)
Q Consensus 1386 ~~LR~~I~~VpQdp~LF~-gTIreNL~~g~---~~~s----d~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQ 1457 (1560)
..+|+.++|++|++.+|. .|++||+.++. ...+ ++.+.++++..++.+.+ .........+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~ 153 (258)
T PRK14241 81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEV-------KDRLDKPGGGLSGGQ 153 (258)
T ss_pred HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-------hhHhhCCcccCCHHH
Confidence 678899999999999997 59999998642 1111 22344555555543222 123344556899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHHHhh-cCEEEEEe------CCEEEE
Q 000406 1458 KQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIRE-ANMIAVVR------DGAVVE 1530 (1560)
Q Consensus 1458 rQRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlsti~~-aDrIlVLd------~G~IvE 1530 (1560)
|||++|||||+.+|+||||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|+ +|+|++
T Consensus 154 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~ 233 (258)
T PRK14241 154 QQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVE 233 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEe
Confidence 99999999999999999999999999999999999999988767899999999999865 99999997 899999
Q ss_pred ecCHHHHHh
Q 000406 1531 YGSHETLLA 1539 (1560)
Q Consensus 1531 ~Gt~~eLl~ 1539 (1560)
.|++++++.
T Consensus 234 ~~~~~~~~~ 242 (258)
T PRK14241 234 IDDTEKIFS 242 (258)
T ss_pred cCCHHHHHh
Confidence 999999986
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-39 Score=368.22 Aligned_cols=216 Identities=22% Similarity=0.393 Sum_probs=183.6
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHH-Hhhce
Q 000406 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKW-LRKQT 1392 (1560)
Q Consensus 1314 I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~-LR~~I 1392 (1560)
++++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+... .|+.+
T Consensus 4 l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (241)
T PRK10895 4 LTAKNLAKAYKG---RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGI 80 (241)
T ss_pred EEEeCcEEEeCC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCe
Confidence 889999999963 36999999999999999999999999999999999999999999999999998877644 57889
Q ss_pred EEEcCCCCCCCc-cHHHHHhcCCC---CCCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHc
Q 000406 1393 ALVGQEPALFAG-TIRDNIALGNP---KASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAIL 1468 (1560)
Q Consensus 1393 ~~VpQdp~LF~g-TIreNL~~g~~---~~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLARALL 1468 (1560)
+|+||++.+|.+ |++||+.++.. ..+.++. ...+.+++..+ |++.........||||||||++|||||+
T Consensus 81 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~ 153 (241)
T PRK10895 81 GYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQR-----EDRANELMEEF--HIEHLRDSMGQSLSGGERRRVEIARALA 153 (241)
T ss_pred EEeccCCcccccCcHHHHHhhhhhcccccCHHHH-----HHHHHHHHHHc--CCHHHhhcchhhCCHHHHHHHHHHHHHh
Confidence 999999998874 99999986421 1122211 12233444444 4555555666789999999999999999
Q ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHHHh
Q 000406 1469 KGSRVLLLDEASSALDLESEKHVQDALRKVS-KRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLA 1539 (1560)
Q Consensus 1469 r~p~ILILDEaTSaLD~~Te~~I~~~L~~~~-~~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eLl~ 1539 (1560)
++|++|||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|++++++.
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 154 ANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 9999999999999999999999999998764 47899999999987755 99999999999999999999875
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=371.09 Aligned_cols=220 Identities=34% Similarity=0.544 Sum_probs=181.7
Q ss_pred EEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccH---HHHhc
Q 000406 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQV---KWLRT 749 (1560)
Q Consensus 673 i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~---~~lr~ 749 (1560)
|+++||+++|+. +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+++
T Consensus 2 l~~~~l~~~~~~--~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred eEEEeeeeecCC--CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 789999999962 2459999999999999999999999999999999999999999999999999876653 34677
Q ss_pred cEEEEecCCcCcc-ccHHHHHhcCCCCCC--HHHH---HHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHH
Q 000406 750 QIGMVGQEPILFA-TSILENVLMGKENAT--MKEA---VAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALA 823 (1560)
Q Consensus 750 ~i~~v~Q~~~lf~-~Tv~eNi~~g~~~~~--~~~~---~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialA 823 (1560)
+++||+|++.+|. .|++||+.++..... .... ........+.+.++.+ |+....+..+.+||||||||++||
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la 157 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERV--GLADKAYQRADQLSGGQQQRVAIA 157 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHc--CcHhhhcCCcccCCHHHHHHHHHH
Confidence 8999999999887 599999987642110 0000 0000111223344444 555566777889999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhH
Q 000406 824 RAMIKDPRILLLDEPTSALDSESESIVQQAIDKIS--VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQL 896 (1560)
Q Consensus 824 RAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l 896 (1560)
|||+.+|++|||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 158 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 158 RALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSEL 233 (243)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHHHh
Confidence 99999999999999999999999999999999873 37999999999999865 999999999999999998876
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=363.61 Aligned_cols=202 Identities=28% Similarity=0.450 Sum_probs=171.9
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCH---HHHhh
Q 000406 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINV---KWLRK 1390 (1560)
Q Consensus 1314 I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l---~~LR~ 1390 (1560)
|+++||+++|+.. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+. ..+|+
T Consensus 1 l~~~~l~~~~~~~--~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (214)
T cd03292 1 IEFINVTKTYPNG--TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78 (214)
T ss_pred CEEEEEEEEeCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence 4789999999642 359999999999999999999999999999999999999999999999999987764 34788
Q ss_pred ceEEEcCCCCCCC-ccHHHHHhcCCC--CCC----HHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 000406 1391 QTALVGQEPALFA-GTIRDNIALGNP--KAS----WAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAI 1463 (1560)
Q Consensus 1391 ~I~~VpQdp~LF~-gTIreNL~~g~~--~~s----d~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaL 1463 (1560)
.++||||++.+|. .|++||+.++.. ..+ ++++.++++..++.+.... ...+||||||||++|
T Consensus 79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~l 147 (214)
T cd03292 79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRA-----------LPAELSGGEQQRVAI 147 (214)
T ss_pred heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhC-----------ChhhcCHHHHHHHHH
Confidence 9999999999998 599999986421 112 2344555555555443332 334799999999999
Q ss_pred HHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCceEEEEecChHHHhh-cCEEEEEeCCEE
Q 000406 1464 ARAILKGSRVLLLDEASSALDLESEKHVQDALRKVS-KRATTIVVAHRLSTIRE-ANMIAVVRDGAV 1528 (1560)
Q Consensus 1464 ARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~-~~~TvI~IAHRlsti~~-aDrIlVLd~G~I 1528 (1560)
||||+++|+||||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++
T Consensus 148 aral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 148 ARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999864 57899999999999986 899999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-39 Score=369.97 Aligned_cols=217 Identities=26% Similarity=0.437 Sum_probs=185.1
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCC-----CccEEEECCEecCCC--CH
Q 000406 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDP-----NQGKVMIEGVDLREI--NV 1385 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p-----~~G~I~IdGvdi~~i--~l 1385 (1560)
.|+++||+++|++ ..+|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||.++... +.
T Consensus 6 ~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 82 (253)
T PRK14261 6 ILSTKNLNLWYGE---KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADV 82 (253)
T ss_pred eEEEeeeEEEECC---eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccch
Confidence 4899999999963 3599999999999999999999999999999999999763 489999999999876 45
Q ss_pred HHHhhceEEEcCCCCCCCccHHHHHhcCCC--CC-C----HHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHH
Q 000406 1386 KWLRKQTALVGQEPALFAGTIRDNIALGNP--KA-S----WAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQK 1458 (1560)
Q Consensus 1386 ~~LR~~I~~VpQdp~LF~gTIreNL~~g~~--~~-s----d~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQr 1458 (1560)
...|+.++|+||++.+|+.|++||+.++.. .. . ++.+.++++.+++.+ ++.+.....+.+||||||
T Consensus 83 ~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS~G~~ 155 (253)
T PRK14261 83 VALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWD-------EVKDRLHDSALSLSGGQQ 155 (253)
T ss_pred hhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCch-------hhHHHhhcChhhCCHHHH
Confidence 677889999999999999999999987521 11 1 123444444444432 223344566678999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHH
Q 000406 1459 QRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETL 1537 (1560)
Q Consensus 1459 QRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eL 1537 (1560)
||++|||||+.+|+||||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14261 156 QRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQI 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHH
Confidence 9999999999999999999999999999999999999988777899999999999965 999999999999999999998
Q ss_pred Hh
Q 000406 1538 LA 1539 (1560)
Q Consensus 1538 l~ 1539 (1560)
..
T Consensus 236 ~~ 237 (253)
T PRK14261 236 FE 237 (253)
T ss_pred Hh
Confidence 76
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-39 Score=370.09 Aligned_cols=212 Identities=30% Similarity=0.477 Sum_probs=184.0
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhhceE
Q 000406 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTA 1393 (1560)
Q Consensus 1314 I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~~I~ 1393 (1560)
|+++||++.|+. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++..++...+++.++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (258)
T PRK13548 3 LEARNLSVRLGG---RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRA 79 (258)
T ss_pred EEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheE
Confidence 789999999963 35999999999999999999999999999999999999999999999999998888888888999
Q ss_pred EEcCCCCC-CCccHHHHHhcCCC-C-C----CHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 000406 1394 LVGQEPAL-FAGTIRDNIALGNP-K-A----SWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARA 1466 (1560)
Q Consensus 1394 ~VpQdp~L-F~gTIreNL~~g~~-~-~----sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLARA 1466 (1560)
|+||++.+ +..|++||+.++.. . . .++++.++++..++.++. ......||||||||++||||
T Consensus 80 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGe~qrv~la~a 148 (258)
T PRK13548 80 VLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLA-----------GRDYPQLSGGEQQRVQLARV 148 (258)
T ss_pred EEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHh-----------cCCcccCCHHHHHHHHHHHH
Confidence 99999987 67899999987531 1 1 123445555555554432 33345799999999999999
Q ss_pred Hc------cCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc--CCceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHH
Q 000406 1467 IL------KGSRVLLLDEASSALDLESEKHVQDALRKVS--KRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETL 1537 (1560)
Q Consensus 1467 LL------r~p~ILILDEaTSaLD~~Te~~I~~~L~~~~--~~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eL 1537 (1560)
|+ .+|+||||||||++||+.+.+.+.+.|++.. .++|||+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 149 l~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (258)
T PRK13548 149 LAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEV 228 (258)
T ss_pred HhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHH
Confidence 99 5999999999999999999999999999865 47899999999999875 999999999999999999998
Q ss_pred Hh
Q 000406 1538 LA 1539 (1560)
Q Consensus 1538 l~ 1539 (1560)
.+
T Consensus 229 ~~ 230 (258)
T PRK13548 229 LT 230 (258)
T ss_pred hC
Confidence 75
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=369.31 Aligned_cols=219 Identities=33% Similarity=0.544 Sum_probs=183.6
Q ss_pred EEEEEEEEEcCCCC-CccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHH---HHh
Q 000406 673 IEFKGVTFAYPSRP-ETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVK---WLR 748 (1560)
Q Consensus 673 i~~~~vs~~y~~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~---~lr 748 (1560)
|+++|++++|+... ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. ..+
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 78999999997421 12699999999999999999999999999999999999999999999999998776543 347
Q ss_pred ccEEEEecCCcCcc-ccHHHHHhcCCCC--CCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHH
Q 000406 749 TQIGMVGQEPILFA-TSILENVLMGKEN--ATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARA 825 (1560)
Q Consensus 749 ~~i~~v~Q~~~lf~-~Tv~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARA 825 (1560)
+.|+|+||++.+|. .|++||+.++... ....+. ...+.+.++.+ |++........+||||||||++||||
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~a 154 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEI-----EERVLELLELV--GLEDKADAYPAQLSGGQKQRVGIARA 154 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHH-----HHHHHHHHHHC--CChhhhhcChhhCCHHHHHHHHHHHH
Confidence 78999999999997 5999999875321 111111 11223445554 55556667778999999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhHhh
Q 000406 826 MIKDPRILLLDEPTSALDSESESIVQQAIDKIS--VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLE 898 (1560)
Q Consensus 826 l~~~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l~~ 898 (1560)
|+.+|++|||||||++||+.+...+.+.|+++. .|+|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 155 l~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 155 LANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred HhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 999999999999999999999999999999874 38999999999999865 99999999999999999887754
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-39 Score=372.55 Aligned_cols=230 Identities=24% Similarity=0.397 Sum_probs=190.1
Q ss_pred cEEEEEEEEEcCCC------CCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHH
Q 000406 1313 GIELKMVTFTYPSR------PEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVK 1386 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~------~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~ 1386 (1560)
-|+++||+++|+.. ...++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+..
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 38999999999631 124699999999999999999999999999999999999999999999999999766666
Q ss_pred HHhhceEEEcCCCC--CCC-ccHHHHHhcC---CCCCC----HHHHHHHHHHHhHH-HHHHhCCCCccccccCCCCCCCh
Q 000406 1387 WLRKQTALVGQEPA--LFA-GTIRDNIALG---NPKAS----WAEIEEAAEEAYIH-KFISSLPQGYETQVGESGVQLSG 1455 (1560)
Q Consensus 1387 ~LR~~I~~VpQdp~--LF~-gTIreNL~~g---~~~~s----d~eI~~al~~a~l~-~~I~~Lp~Gldt~Vge~G~~LSG 1455 (1560)
..++.++|+||++. ++. -|+.+|+.+. +.... .+++.++++.+++. +.. +. ...+|||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~----~~~~LS~ 152 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHA-------SY----YPHMLAP 152 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHH-------hc----CchhcCH
Confidence 66778999999985 444 3889998642 11111 23455666666652 222 22 2347999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CceEEEEecChHHHhh-cCEEEEEeCCEEEEec
Q 000406 1456 GQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSK--RATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYG 1532 (1560)
Q Consensus 1456 GQrQRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~--~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~G 1532 (1560)
|||||++|||||+++|+||||||||++||+.+.+.+.+.|++..+ ++|||+|||+++.+.. ||+|++|++|++++.|
T Consensus 153 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~ 232 (267)
T PRK15112 153 GQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERG 232 (267)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999999999998753 7899999999999987 9999999999999999
Q ss_pred CHHHHHhhccChHHHHHHHHh
Q 000406 1533 SHETLLASHLNGVYASLVRAE 1553 (1560)
Q Consensus 1533 t~~eLl~~~~~g~y~~l~~~q 1553 (1560)
+++++.+......+++++...
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~ 253 (267)
T PRK15112 233 STADVLASPLHELTKRLIAGH 253 (267)
T ss_pred CHHHHhcCCCCHHHHHHHHhc
Confidence 999998744456677787654
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-39 Score=368.34 Aligned_cols=216 Identities=28% Similarity=0.439 Sum_probs=179.5
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecC------CCCHHH
Q 000406 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLR------EINVKW 1387 (1560)
Q Consensus 1314 I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~------~i~l~~ 1387 (1560)
++++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++. ......
T Consensus 3 l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (242)
T PRK11124 3 IQLNGINCFYGA---HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRE 79 (242)
T ss_pred EEEEeeEEEECC---eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHH
Confidence 789999999963 35999999999999999999999999999999999999999999999999873 123456
Q ss_pred HhhceEEEcCCCCCCCc-cHHHHHhcCC---CCCCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 000406 1388 LRKQTALVGQEPALFAG-TIRDNIALGN---PKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAI 1463 (1560)
Q Consensus 1388 LR~~I~~VpQdp~LF~g-TIreNL~~g~---~~~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaL 1463 (1560)
+|++++|+||++.+|.+ |++||+.++. .....++.. ..+.+++..+ |++..+.....+||||||||++|
T Consensus 80 ~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~l 152 (242)
T PRK11124 80 LRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQAL-----ARAEKLLERL--RLKPYADRFPLHLSGGQQQRVAI 152 (242)
T ss_pred HHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CChhhhhCChhhCCHHHHHHHHH
Confidence 78899999999999975 9999997421 112222211 1122333333 34444444556899999999999
Q ss_pred HHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHHHh
Q 000406 1464 ARAILKGSRVLLLDEASSALDLESEKHVQDALRKVS-KRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLA 1539 (1560)
Q Consensus 1464 ARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~-~~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eLl~ 1539 (1560)
||||+++|+||||||||++||+++...+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 153 aral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 230 (242)
T PRK11124 153 ARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTQ 230 (242)
T ss_pred HHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhcC
Confidence 999999999999999999999999999999999875 47899999999999965 99999999999999999998764
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=366.96 Aligned_cols=215 Identities=26% Similarity=0.446 Sum_probs=179.6
Q ss_pred EEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHHHhccEE
Q 000406 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIG 752 (1560)
Q Consensus 673 i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~ 752 (1560)
|+++||++.|+.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ..++++++
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 78 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR-KAARQSLG 78 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccch-HHHhhhEE
Confidence 5789999999642 146999999999999999999999999999999999999999999999999986543 55677899
Q ss_pred EEecCCcCcc-ccHHHHHhcCCCC--CCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHHhccC
Q 000406 753 MVGQEPILFA-TSILENVLMGKEN--ATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKD 829 (1560)
Q Consensus 753 ~v~Q~~~lf~-~Tv~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARAl~~~ 829 (1560)
||+|++.++. .|++||+.++... ...++..+ .+.+.++.+ |+....+....+||||||||++|||||+.+
T Consensus 79 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 151 (220)
T cd03263 79 YCPQFDALFDELTVREHLRFYARLKGLPKSEIKE-----EVELLLRVL--GLTDKANKRARTLSGGMKRKLSLAIALIGG 151 (220)
T ss_pred EecCcCCccccCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCHHHHhChhhhCCHHHHHHHHHHHHHhcC
Confidence 9999999885 6999999874211 11111111 122334443 444445566679999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhH
Q 000406 830 PRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQL 896 (1560)
Q Consensus 830 p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l 896 (1560)
|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 152 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 152 PSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999999999988767999999999999875 999999999999999988764
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-39 Score=379.98 Aligned_cols=221 Identities=27% Similarity=0.471 Sum_probs=183.4
Q ss_pred cEEEEEEEEEcCCCC--CccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCC--------
Q 000406 672 KIEFKGVTFAYPSRP--ETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKS-------- 741 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~~--~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~-------- 741 (1560)
.|+++|++++|+... ..++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++..
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 388999999997432 1358999999999999999999999999999999999999999999999887632
Q ss_pred ----------------ccHHHHhccEEEEecCC--cCccccHHHHHhcCCCC--CCHHHHHHHHHHhhhHHHHHhCCCCC
Q 000406 742 ----------------LQVKWLRTQIGMVGQEP--ILFATSILENVLMGKEN--ATMKEAVAACKAASAHSFISELPLGY 801 (1560)
Q Consensus 742 ----------------~~~~~lr~~i~~v~Q~~--~lf~~Tv~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~gl 801 (1560)
.+...++++||||||+| .+|..||+|||.|+... ...++..+. +.+.++.+ |+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL 154 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKR-----AAKYIELV--GL 154 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHc--CC
Confidence 13356788999999986 67888999999987432 222222221 12234443 55
Q ss_pred C-cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCcccccc-CCE
Q 000406 802 D-TQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKIS-VGRTTIVIAHRLATVKN-ANT 878 (1560)
Q Consensus 802 ~-t~~~~~g~~LSgGQrQRialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~D~ 878 (1560)
+ ...+..+.+||||||||++|||||+.+|+||||||||++||+.+...+.+.|+++. .|+|||+|||+++.+.. |||
T Consensus 155 ~~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adr 234 (305)
T PRK13651 155 DESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKR 234 (305)
T ss_pred ChhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCE
Confidence 4 34667788999999999999999999999999999999999999999999998874 58999999999998755 999
Q ss_pred EEEEeCCeEEEecChhhHhhh
Q 000406 879 IVVLDQGSVVEIGNHRQLLER 899 (1560)
Q Consensus 879 i~vl~~G~iv~~G~~~~l~~~ 899 (1560)
|++|++|++++.|+++++...
T Consensus 235 v~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 235 TIFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred EEEEECCEEEEECCHHHHhcC
Confidence 999999999999999998653
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=372.74 Aligned_cols=217 Identities=31% Similarity=0.516 Sum_probs=181.2
Q ss_pred cEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCC-----CCccEEEECCeecCC--ccH
Q 000406 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYD-----PTKGLITLDGHDLKS--LQV 744 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~-----~~~G~I~i~g~~i~~--~~~ 744 (1560)
.|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++.. .+.
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (253)
T PRK14242 6 KMEARGLSFFYGD---FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDV 82 (253)
T ss_pred EEEEeeeEEEECC---eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCH
Confidence 4899999999963 358999999999999999999999999999999999974 589999999999864 344
Q ss_pred HHHhccEEEEecCCcCccccHHHHHhcCCCC--C-CH----HHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHH
Q 000406 745 KWLRTQIGMVGQEPILFATSILENVLMGKEN--A-TM----KEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQK 817 (1560)
Q Consensus 745 ~~lr~~i~~v~Q~~~lf~~Tv~eNi~~g~~~--~-~~----~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQr 817 (1560)
..+|+.|+|++|++.+|+.|++||+.++... . .. +++.++++..++.+. +....+..+.+||||||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LSgGq~ 155 (253)
T PRK14242 83 VELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDE-------VKDRLHESALGLSGGQQ 155 (253)
T ss_pred HHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchh-------hhHHhhCCcccCCHHHH
Confidence 5678899999999999989999999875311 1 11 122222222222111 12345667789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhH
Q 000406 818 QRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQL 896 (1560)
Q Consensus 818 QRialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l 896 (1560)
||++|||||+.+|+||||||||++||+.+...+.+.|+++.+++|||++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14242 156 QRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQI 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988668999999999999865 999999999999999999887
Q ss_pred hh
Q 000406 897 LE 898 (1560)
Q Consensus 897 ~~ 898 (1560)
..
T Consensus 236 ~~ 237 (253)
T PRK14242 236 FT 237 (253)
T ss_pred Hc
Confidence 64
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-39 Score=369.85 Aligned_cols=204 Identities=30% Similarity=0.397 Sum_probs=176.9
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhhce
Q 000406 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQT 1392 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~~I 1392 (1560)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++. .+|+.+
T Consensus 12 ~l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i 83 (257)
T PRK11247 12 PLLLNAVSKRYGE---RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDT 83 (257)
T ss_pred cEEEEEEEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCce
Confidence 5999999999963 35999999999999999999999999999999999999999999999998763 467889
Q ss_pred EEEcCCCCCCC-ccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHccCC
Q 000406 1393 ALVGQEPALFA-GTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGS 1471 (1560)
Q Consensus 1393 ~~VpQdp~LF~-gTIreNL~~g~~~~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLARALLr~p 1471 (1560)
+|+||++.+|+ .|++||+.++.....++++.++++..++.++. .....+||||||||++|||||+++|
T Consensus 84 ~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgGqkqrl~laraL~~~p 152 (257)
T PRK11247 84 RLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRA-----------NEWPAALSGGQKQRVALARALIHRP 152 (257)
T ss_pred EEEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHh-----------cCChhhCCHHHHHHHHHHHHHhcCC
Confidence 99999999987 69999998753222245566666666654433 3344689999999999999999999
Q ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHhc--CCceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHH
Q 000406 1472 RVLLLDEASSALDLESEKHVQDALRKVS--KRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHE 1535 (1560)
Q Consensus 1472 ~ILILDEaTSaLD~~Te~~I~~~L~~~~--~~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~ 1535 (1560)
+||||||||++||+.+...+.+.|++.. .++|+|+|||+++.+.. ||+|++|++|+|++.|+.+
T Consensus 153 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 153 GLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 9999999999999999999999998864 36899999999999865 9999999999999988754
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-39 Score=371.62 Aligned_cols=218 Identities=28% Similarity=0.433 Sum_probs=181.6
Q ss_pred ccEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCC-----CccEEEECCeecCC--cc
Q 000406 671 GKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDP-----TKGLITLDGHDLKS--LQ 743 (1560)
Q Consensus 671 g~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~-----~~G~I~i~g~~i~~--~~ 743 (1560)
..|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|+++.. .+
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (254)
T PRK14273 6 AIIETENLNLFYTD---FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82 (254)
T ss_pred ceEEEeeeEEEeCC---ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEeccccccc
Confidence 36999999999963 3589999999999999999999999999999999999987 59999999998853 23
Q ss_pred HHHHhccEEEEecCCcCccccHHHHHhcCCCCC---CH----HHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHH
Q 000406 744 VKWLRTQIGMVGQEPILFATSILENVLMGKENA---TM----KEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQ 816 (1560)
Q Consensus 744 ~~~lr~~i~~v~Q~~~lf~~Tv~eNi~~g~~~~---~~----~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQ 816 (1560)
...+|+.|+||+|++.+|+.||+|||.++.... .. +.+.++++..++.+. +....+..+.+|||||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------l~~~~~~~~~~LSgG~ 155 (254)
T PRK14273 83 ILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNE-------VKDKLNTNALSLSGGQ 155 (254)
T ss_pred HHHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchh-------hHHHHhCCcccCCHHH
Confidence 456788899999999999899999998763211 11 122222333222111 1123345677999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhh
Q 000406 817 KQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQ 895 (1560)
Q Consensus 817 rQRialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~ 895 (1560)
|||++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 156 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 235 (254)
T PRK14273 156 QQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDE 235 (254)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999998778999999999999865 99999999999999999998
Q ss_pred Hhh
Q 000406 896 LLE 898 (1560)
Q Consensus 896 l~~ 898 (1560)
+..
T Consensus 236 ~~~ 238 (254)
T PRK14273 236 LFF 238 (254)
T ss_pred HHh
Confidence 864
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-39 Score=372.92 Aligned_cols=220 Identities=30% Similarity=0.512 Sum_probs=184.4
Q ss_pred CcccEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCC-----CCccEEEECCeecCC--
Q 000406 669 VSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYD-----PTKGLITLDGHDLKS-- 741 (1560)
Q Consensus 669 ~~g~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~-----~~~G~I~i~g~~i~~-- 741 (1560)
..+.|+++|++++|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 10 ~~~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~ 86 (260)
T PRK10744 10 APSKIQVRNLNFYYGK---FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPK 86 (260)
T ss_pred CCceEEEEEEEEEeCC---eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccc
Confidence 3467999999999963 358999999999999999999999999999999999986 589999999999853
Q ss_pred ccHHHHhccEEEEecCCcCccccHHHHHhcCCCC---CCHH----HHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCCh
Q 000406 742 LQVKWLRTQIGMVGQEPILFATSILENVLMGKEN---ATMK----EAVAACKAASAHSFISELPLGYDTQVGDRGTQLSG 814 (1560)
Q Consensus 742 ~~~~~lr~~i~~v~Q~~~lf~~Tv~eNi~~g~~~---~~~~----~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSg 814 (1560)
.+...+|++|+|++|++.+|+.|++||+.++... .+.+ ++.++++..++. .++...+++...+|||
T Consensus 87 ~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~~~~~~~LS~ 159 (260)
T PRK10744 87 QDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALW-------NEVKDKLHQSGYSLSG 159 (260)
T ss_pred cchHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCC-------hhhHHHHhcCCCCCCH
Confidence 3456778899999999999999999999875321 1222 122222222221 1123445677789999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCcccccc-CCEEEEEeCCeEEEecCh
Q 000406 815 GQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNH 893 (1560)
Q Consensus 815 GQrQRialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~ 893 (1560)
|||||++|||||+.+|+||||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|++
T Consensus 160 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~ 239 (260)
T PRK10744 160 GQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNT 239 (260)
T ss_pred HHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999988668899999999999865 999999999999999999
Q ss_pred hhHhh
Q 000406 894 RQLLE 898 (1560)
Q Consensus 894 ~~l~~ 898 (1560)
+++..
T Consensus 240 ~~~~~ 244 (260)
T PRK10744 240 DTIFT 244 (260)
T ss_pred HHHHh
Confidence 88765
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=366.04 Aligned_cols=207 Identities=33% Similarity=0.546 Sum_probs=171.6
Q ss_pred EEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHH---HHhc
Q 000406 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVK---WLRT 749 (1560)
Q Consensus 673 i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~---~lr~ 749 (1560)
|+++|++++|++. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. .+|+
T Consensus 2 l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 7899999999632 23589999999999999999999999999999999999999999999999998765433 3677
Q ss_pred cEEEEecCCcCccc-cHHHHHhcCCCC--CCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHHh
Q 000406 750 QIGMVGQEPILFAT-SILENVLMGKEN--ATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAM 826 (1560)
Q Consensus 750 ~i~~v~Q~~~lf~~-Tv~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARAl 826 (1560)
+++|++|++.+|.. |++||+.++... ...++.. ..+.+.++.+ |+.........+||||||||++|||||
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~laral 153 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDAN-----ERVSAALEKV--GLEGKAHALPMQLSGGEQQRVAIARAI 153 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 89999999998875 999999875211 1111111 1122334443 444455666679999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCcccccc-CCEEEEEeCCeE
Q 000406 827 IKDPRILLLDEPTSALDSESESIVQQAIDKIS-VGRTTIVIAHRLATVKN-ANTIVVLDQGSV 887 (1560)
Q Consensus 827 ~~~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~D~i~vl~~G~i 887 (1560)
+.+|+||||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++
T Consensus 154 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 154 VHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred hcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999998874 48999999999999875 999999999975
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-39 Score=372.77 Aligned_cols=214 Identities=24% Similarity=0.420 Sum_probs=186.5
Q ss_pred ccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhhc
Q 000406 1312 LGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQ 1391 (1560)
Q Consensus 1312 ~~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~~ 1391 (1560)
..|+++||+++|++ ..+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+...+++.
T Consensus 6 ~~l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (265)
T PRK10253 6 ARLRGEQLTLGYGK---YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARR 82 (265)
T ss_pred cEEEEEEEEEEECC---EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhh
Confidence 35999999999963 359999999999999999999999999999999999999999999999999998888888899
Q ss_pred eEEEcCCCCCCC-ccHHHHHhcCC-CC---------CCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHH
Q 000406 1392 TALVGQEPALFA-GTIRDNIALGN-PK---------ASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQR 1460 (1560)
Q Consensus 1392 I~~VpQdp~LF~-gTIreNL~~g~-~~---------~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQR 1460 (1560)
++|+||++.+|. .|++||+.++. +. ..+++++++++..++.++. ......||||||||
T Consensus 83 i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~Gq~qr 151 (265)
T PRK10253 83 IGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLA-----------DQSVDTLSGGQRQR 151 (265)
T ss_pred eEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHh-----------cCCcccCChHHHHH
Confidence 999999998875 69999998752 11 1123455666666655433 33446899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHH
Q 000406 1461 IAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSK--RATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETL 1537 (1560)
Q Consensus 1461 LaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~--~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eL 1537 (1560)
++|||||+++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|+|++.|+++++
T Consensus 152 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (265)
T PRK10253 152 AWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEI 231 (265)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999998753 6899999999998866 999999999999999999998
Q ss_pred Hh
Q 000406 1538 LA 1539 (1560)
Q Consensus 1538 l~ 1539 (1560)
..
T Consensus 232 ~~ 233 (265)
T PRK10253 232 VT 233 (265)
T ss_pred hh
Confidence 75
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=381.39 Aligned_cols=217 Identities=25% Similarity=0.460 Sum_probs=182.8
Q ss_pred ccEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHHHhcc
Q 000406 671 GKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQ 750 (1560)
Q Consensus 671 g~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~ 750 (1560)
..|+++|++++|++ ..+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..|++
T Consensus 6 ~~i~i~~l~k~~~~---~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~-~~~~~ 81 (306)
T PRK13537 6 APIDFRNVEKRYGD---KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRAR-HARQR 81 (306)
T ss_pred ceEEEEeEEEEECC---eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchH-HHHhc
Confidence 36999999999963 469999999999999999999999999999999999999999999999999876543 46788
Q ss_pred EEEEecCCcCcc-ccHHHHHhcCCCC--CCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHHhc
Q 000406 751 IGMVGQEPILFA-TSILENVLMGKEN--ATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMI 827 (1560)
Q Consensus 751 i~~v~Q~~~lf~-~Tv~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARAl~ 827 (1560)
||||||++.++. .|++||+.+.... ....+..+. +.+.++.+ |+.........+||||||||++|||||+
T Consensus 82 ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~aL~ 154 (306)
T PRK13537 82 VGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARAL-----VPPLLEFA--KLENKADAKVGELSGGMKRRLTLARALV 154 (306)
T ss_pred EEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCchHhcCchhhCCHHHHHHHHHHHHHh
Confidence 999999999986 5999999863221 122222111 12233332 4444445556789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhHhh
Q 000406 828 KDPRILLLDEPTSALDSESESIVQQAIDKIS-VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLE 898 (1560)
Q Consensus 828 ~~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l~~ 898 (1560)
.+|++|||||||++||+.+++.+++.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 155 ~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 227 (306)
T PRK13537 155 NDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIE 227 (306)
T ss_pred CCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999874 48999999999999976 99999999999999999999865
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-39 Score=389.64 Aligned_cols=217 Identities=27% Similarity=0.455 Sum_probs=186.1
Q ss_pred cEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHHHhccE
Q 000406 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQI 751 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 751 (1560)
.|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++...++++|
T Consensus 3 ~L~~~nls~~y~~---~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 3 MIDVSDLSVEFGD---TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence 4899999999973 4699999999999999999999999999999999999999999999999999988888889999
Q ss_pred EEEecCCcC-ccccHHHHHhcCCCCC-------CHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHH
Q 000406 752 GMVGQEPIL-FATSILENVLMGKENA-------TMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALA 823 (1560)
Q Consensus 752 ~~v~Q~~~l-f~~Tv~eNi~~g~~~~-------~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialA 823 (1560)
+||+|++.+ ++.|++||+.++.... ..+. ...+++.++.+ |+.........+||||||||++||
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~------~~~v~~~le~v--gl~~~~~~~~~~LSgGerQRv~IA 151 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETD------RAAVERAMERT--GVAQFADRPVTSLSGGERQRVLLA 151 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHH------HHHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHH
Confidence 999999987 4669999999875211 1110 11112223332 444445666789999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhHhhh
Q 000406 824 RAMIKDPRILLLDEPTSALDSESESIVQQAIDKIS-VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLER 899 (1560)
Q Consensus 824 RAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l~~~ 899 (1560)
|||+++|+||||||||++||+.++..+.+.|+++. +++|+|++||+++.+.. |||+++|++|++++.|++++++..
T Consensus 152 rAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~~ 229 (402)
T PRK09536 152 RALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTA 229 (402)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhCc
Confidence 99999999999999999999999999999999884 58999999999999965 999999999999999999998753
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=371.45 Aligned_cols=217 Identities=32% Similarity=0.550 Sum_probs=183.8
Q ss_pred EEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHHHhccEE
Q 000406 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIG 752 (1560)
Q Consensus 673 i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~ 752 (1560)
|+++||+++|++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (242)
T cd03295 1 IEFENVTKRYGGG--KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG 78 (242)
T ss_pred CEEEEEEEEeCCc--ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE
Confidence 4789999999741 45899999999999999999999999999999999999999999999999998777777788999
Q ss_pred EEecCCcCcc-ccHHHHHhcCCCC--CCHHHHHHHHHHhhhHHHHHhCCCCCCc--ccCCCCCCCChHHHHHHHHHHHhc
Q 000406 753 MVGQEPILFA-TSILENVLMGKEN--ATMKEAVAACKAASAHSFISELPLGYDT--QVGDRGTQLSGGQKQRIALARAMI 827 (1560)
Q Consensus 753 ~v~Q~~~lf~-~Tv~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~gl~t--~~~~~g~~LSgGQrQRialARAl~ 827 (1560)
|++|++.+|+ .|++||+.++... ...++. ...+.+.++.+ |+.. ...+.+.+||||||||++|||||+
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~l--~l~~~~~~~~~~~~LS~G~~qrv~laral~ 151 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKLLKWPKEKI-----RERADELLALV--GLDPAEFADRYPHELSGGQQQRVGVARALA 151 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHHcCCCHHHH-----HHHHHHHHHHc--CCCcHHHHhcChhhCCHHHHHHHHHHHHHh
Confidence 9999999996 5999999875321 111111 11223445554 4443 456777899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhHhh
Q 000406 828 KDPRILLLDEPTSALDSESESIVQQAIDKIS--VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLE 898 (1560)
Q Consensus 828 ~~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l~~ 898 (1560)
++|++|||||||++||+.+...+.+.|+++. .|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 152 ~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 225 (242)
T cd03295 152 ADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILR 225 (242)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHc
Confidence 9999999999999999999999999999874 38999999999998765 99999999999999999888754
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-39 Score=374.49 Aligned_cols=220 Identities=30% Similarity=0.497 Sum_probs=181.4
Q ss_pred cEEEEEEEEEcCCCC--CccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCC----CHH
Q 000406 1313 GIELKMVTFTYPSRP--EVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREI----NVK 1386 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~~--~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i----~l~ 1386 (1560)
.|+++||+++|+... ..++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++... +..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999996321 13599999999999999999999999999999999999999999999999998653 345
Q ss_pred HHhhceEEEcCCC--CCCCccHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHHhCCCCccc-cccCCCCCCChHHHHHH
Q 000406 1387 WLRKQTALVGQEP--ALFAGTIRDNIALGNP--KASWAEIEEAAEEAYIHKFISSLPQGYET-QVGESGVQLSGGQKQRI 1461 (1560)
Q Consensus 1387 ~LR~~I~~VpQdp--~LF~gTIreNL~~g~~--~~sd~eI~~al~~a~l~~~I~~Lp~Gldt-~Vge~G~~LSGGQrQRL 1461 (1560)
..|+.++|+||+| .+|..|++|||.++.. ..+.++..+. +.+++..+ |++. ........||||||||+
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrl 154 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEK-----ALKWLKKV--GLSEDLISKSPFELSGGQMRRV 154 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCChhHhhCCcccCCHHHHHHH
Confidence 6788999999998 5888899999986421 2222222111 12223332 3431 23444568999999999
Q ss_pred HHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHHHh
Q 000406 1462 AIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVS-KRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLA 1539 (1560)
Q Consensus 1462 aLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~-~~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eLl~ 1539 (1560)
+|||||+.+|++|||||||++||+.+.+.+.+.|+++. ++.|+|+|||+++.+.. ||+|++|++|++++.|+++++++
T Consensus 155 ~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13641 155 AIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFS 234 (287)
T ss_pred HHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999999875 46899999999999865 99999999999999999999875
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-39 Score=368.97 Aligned_cols=217 Identities=31% Similarity=0.505 Sum_probs=186.6
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccC-----CCccEEEECCEecCCC--CH
Q 000406 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYD-----PNQGKVMIEGVDLREI--NV 1385 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~-----p~~G~I~IdGvdi~~i--~l 1385 (1560)
.++++||++.|++ .++|+|+||+|++||++||+|+||||||||+++|+|+.+ |++|+|.+||.++... +.
T Consensus 3 ~l~~~~v~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 79 (250)
T PRK14266 3 RIEVENLNTYFDD---AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDV 79 (250)
T ss_pred EEEEEeEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccH
Confidence 3789999999963 359999999999999999999999999999999999974 4899999999998753 45
Q ss_pred HHHhhceEEEcCCCCCCCccHHHHHhcCCC--CC-CH----HHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHH
Q 000406 1386 KWLRKQTALVGQEPALFAGTIRDNIALGNP--KA-SW----AEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQK 1458 (1560)
Q Consensus 1386 ~~LR~~I~~VpQdp~LF~gTIreNL~~g~~--~~-sd----~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQr 1458 (1560)
..+|+.++|+||++.+|.+|++||+.++.. .. +. +++.++++.+++.+++.. .+...+..||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~Gq~ 152 (250)
T PRK14266 80 VELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKD-------KLDKSALGLSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHH-------HHhCCcccCCHHHH
Confidence 678899999999999999999999986421 11 11 335556666666555432 12344568999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHH
Q 000406 1459 QRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETL 1537 (1560)
Q Consensus 1459 QRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eL 1537 (1560)
||+||||||+++|+||||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14266 153 QRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQI 232 (250)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999877 899999999999999999999
Q ss_pred Hh
Q 000406 1538 LA 1539 (1560)
Q Consensus 1538 l~ 1539 (1560)
..
T Consensus 233 ~~ 234 (250)
T PRK14266 233 FI 234 (250)
T ss_pred Hh
Confidence 76
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-39 Score=365.47 Aligned_cols=210 Identities=37% Similarity=0.529 Sum_probs=180.2
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhhceE
Q 000406 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTA 1393 (1560)
Q Consensus 1314 I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~~I~ 1393 (1560)
|+++|++++|+. +++|+|+||+|.+||++||+|+||||||||+++|+|+++|++|+|.+||.++...+. .++.++
T Consensus 1 i~i~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~ 75 (237)
T TIGR00968 1 IEIANISKRFGS---FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIG 75 (237)
T ss_pred CEEEEEEEEECC---eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEE
Confidence 579999999963 359999999999999999999999999999999999999999999999999986653 478899
Q ss_pred EEcCCCCCCCc-cHHHHHhcCCC--CCC----HHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 000406 1394 LVGQEPALFAG-TIRDNIALGNP--KAS----WAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARA 1466 (1560)
Q Consensus 1394 ~VpQdp~LF~g-TIreNL~~g~~--~~s----d~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLARA 1466 (1560)
|+||++.+|++ |++||+.++.. ..+ ++++.++++..++.++. .....+||+||+||++||||
T Consensus 76 ~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~lS~G~~qrl~lara 144 (237)
T TIGR00968 76 FVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLG-----------DRYPNQLSGGQRQRVALARA 144 (237)
T ss_pred EEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHh-----------hCChhhCCHHHHHHHHHHHH
Confidence 99999999975 99999986432 111 22344444444444333 23345799999999999999
Q ss_pred HccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHHHh
Q 000406 1467 ILKGSRVLLLDEASSALDLESEKHVQDALRKVSK--RATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLA 1539 (1560)
Q Consensus 1467 LLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~--~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eLl~ 1539 (1560)
|+++|+||||||||++||+++.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++++
T Consensus 145 l~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 220 (237)
T TIGR00968 145 LAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYD 220 (237)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHc
Confidence 9999999999999999999999999999998654 6899999999999866 99999999999999999999986
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-39 Score=370.78 Aligned_cols=212 Identities=27% Similarity=0.441 Sum_probs=183.5
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhhceE
Q 000406 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTA 1393 (1560)
Q Consensus 1314 I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~~I~ 1393 (1560)
++++|+++.|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+...+|+.++
T Consensus 2 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (256)
T TIGR03873 2 LRLSRVSWSAGG---RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVA 78 (256)
T ss_pred ceEEeEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheE
Confidence 789999999963 36999999999999999999999999999999999999999999999999999988888888999
Q ss_pred EEcCCCC-CCCccHHHHHhcCCCC----------CCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHH
Q 000406 1394 LVGQEPA-LFAGTIRDNIALGNPK----------ASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIA 1462 (1560)
Q Consensus 1394 ~VpQdp~-LF~gTIreNL~~g~~~----------~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLa 1462 (1560)
|+||++. .+..|++||+.++... ..++++.++++..++.+. .......||||||||++
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl~ 147 (256)
T TIGR03873 79 LVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHL-----------ADRDMSTLSGGERQRVH 147 (256)
T ss_pred EecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhh-----------hcCCcccCCHHHHHHHH
Confidence 9999985 4568999999875210 012234555555555433 23344579999999999
Q ss_pred HHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC-CceEEEEecChHHHh-hcCEEEEEeCCEEEEecCHHHHHh
Q 000406 1463 IARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSK-RATTIVVAHRLSTIR-EANMIAVVRDGAVVEYGSHETLLA 1539 (1560)
Q Consensus 1463 LARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~-~~TvI~IAHRlsti~-~aDrIlVLd~G~IvE~Gt~~eLl~ 1539 (1560)
||||++.+|++|||||||++||+.+...+.+.|++..+ ++|+|+|||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 148 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 148 VARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 99999999999999999999999999999999998753 689999999999995 499999999999999999999875
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-39 Score=386.58 Aligned_cols=201 Identities=28% Similarity=0.434 Sum_probs=172.4
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCE----ecCCCCHHHHh----hceEEEcCCCC
Q 000406 1329 VTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGV----DLREINVKWLR----KQTALVGQEPA 1400 (1560)
Q Consensus 1329 ~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGv----di~~i~l~~LR----~~I~~VpQdp~ 1400 (1560)
..+|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|++||. ++...+...+| ++|+||||++.
T Consensus 37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~ 116 (382)
T TIGR03415 37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA 116 (382)
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCc
Confidence 35899999999999999999999999999999999999999999999996 67777665543 57999999999
Q ss_pred CCC-ccHHHHHhcCCC--CCCH----HHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 000406 1401 LFA-GTIRDNIALGNP--KASW----AEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRV 1473 (1560)
Q Consensus 1401 LF~-gTIreNL~~g~~--~~sd----~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLARALLr~p~I 1473 (1560)
+|+ .|++||+.++.. ..+. +++.++++.+++.++... ...+||||||||++|||||+.+|+|
T Consensus 117 l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~-----------~~~~LSgGq~QRV~LARALa~~P~I 185 (382)
T TIGR03415 117 LMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADK-----------KPGELSGGMQQRVGLARAFAMDADI 185 (382)
T ss_pred CCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 997 799999987531 1222 334556666665544332 3347999999999999999999999
Q ss_pred EEEeCCCcCCCHHHHHHHHHHHHHhcC--CceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHHHhh
Q 000406 1474 LLLDEASSALDLESEKHVQDALRKVSK--RATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLAS 1540 (1560)
Q Consensus 1474 LILDEaTSaLD~~Te~~I~~~L~~~~~--~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eLl~~ 1540 (1560)
||||||||+||+.+.+.+++.|+++.+ ++|+|+|||+++.+.. ||||++|++|++++.|++++++.+
T Consensus 186 LLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~ 255 (382)
T TIGR03415 186 LLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLN 255 (382)
T ss_pred EEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC
Confidence 999999999999999999999998754 7899999999999855 999999999999999999999873
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-39 Score=368.59 Aligned_cols=217 Identities=28% Similarity=0.439 Sum_probs=184.9
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCC-----CccEEEECCEecC-CCCHH
Q 000406 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDP-----NQGKVMIEGVDLR-EINVK 1386 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p-----~~G~I~IdGvdi~-~i~l~ 1386 (1560)
.++++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.++|.++. ..+..
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 79 (249)
T PRK14253 3 KFNIENLDLFYGE---NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVA 79 (249)
T ss_pred eEEEeccEEEECC---eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchH
Confidence 4889999999963 4599999999999999999999999999999999999986 5999999999986 45667
Q ss_pred HHhhceEEEcCCCCCCCccHHHHHhcCCC--CCC-H----HHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHH
Q 000406 1387 WLRKQTALVGQEPALFAGTIRDNIALGNP--KAS-W----AEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQ 1459 (1560)
Q Consensus 1387 ~LR~~I~~VpQdp~LF~gTIreNL~~g~~--~~s-d----~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQ 1459 (1560)
.+|+.++|+||++.+|..|++||+.++.. ... . +++.++++.+++.+.+ ..........|||||||
T Consensus 80 ~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~LS~G~~q 152 (249)
T PRK14253 80 DLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEV-------KDRLKSHAFGLSGGQQQ 152 (249)
T ss_pred HHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhh-------hHHhhcCcccCCHHHHH
Confidence 78899999999999999999999986521 111 1 2334444444443322 22334455689999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHHH
Q 000406 1460 RIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLL 1538 (1560)
Q Consensus 1460 RLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eLl 1538 (1560)
|++|||||+.+|+||||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|+|++.|+++++.
T Consensus 153 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (249)
T PRK14253 153 RLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIF 232 (249)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999998777899999999999876 9999999999999999999987
Q ss_pred h
Q 000406 1539 A 1539 (1560)
Q Consensus 1539 ~ 1539 (1560)
.
T Consensus 233 ~ 233 (249)
T PRK14253 233 S 233 (249)
T ss_pred c
Confidence 5
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-39 Score=374.42 Aligned_cols=212 Identities=29% Similarity=0.430 Sum_probs=180.3
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecC--CCCHHHHhhc
Q 000406 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLR--EINVKWLRKQ 1391 (1560)
Q Consensus 1314 I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~--~i~l~~LR~~ 1391 (1560)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++. ..+...+|+.
T Consensus 2 l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (271)
T PRK13638 2 LATSDLWFRYQD---EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ 78 (271)
T ss_pred eEEEEEEEEcCC---cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhh
Confidence 789999999963 35999999999999999999999999999999999999999999999999985 3345677889
Q ss_pred eEEEcCCCC--CCCccHHHHHhcCC--CCCCHH----HHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 000406 1392 TALVGQEPA--LFAGTIRDNIALGN--PKASWA----EIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAI 1463 (1560)
Q Consensus 1392 I~~VpQdp~--LF~gTIreNL~~g~--~~~sd~----eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaL 1463 (1560)
++||||++. +|..|+.+|+.++. ...+.+ ++.++++..++.++. ......||||||||++|
T Consensus 79 i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrl~l 147 (271)
T PRK13638 79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFR-----------HQPIQCLSHGQKKRVAI 147 (271)
T ss_pred eEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHh-----------cCCchhCCHHHHHHHHH
Confidence 999999985 67789999998641 112222 334455555554332 22345799999999999
Q ss_pred HHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHHHh
Q 000406 1464 ARAILKGSRVLLLDEASSALDLESEKHVQDALRKVS-KRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLA 1539 (1560)
Q Consensus 1464 ARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~-~~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eLl~ 1539 (1560)
||||+.+|+||||||||++||+.+...+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.|++++++.
T Consensus 148 araL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 225 (271)
T PRK13638 148 AGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFA 225 (271)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999999864 47899999999999865 99999999999999999999875
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=368.14 Aligned_cols=216 Identities=25% Similarity=0.457 Sum_probs=183.6
Q ss_pred EEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHH-HhccE
Q 000406 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKW-LRTQI 751 (1560)
Q Consensus 673 i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~-lr~~i 751 (1560)
|+++||+++|++ ..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+... .++.+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 77 (232)
T cd03218 1 LRAENLSKRYGK---RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI 77 (232)
T ss_pred CeEEEEEEEeCC---EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE
Confidence 578999999963 45899999999999999999999999999999999999999999999999987766544 35679
Q ss_pred EEEecCCcCccc-cHHHHHhcCCCCC--CHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHHhcc
Q 000406 752 GMVGQEPILFAT-SILENVLMGKENA--TMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIK 828 (1560)
Q Consensus 752 ~~v~Q~~~lf~~-Tv~eNi~~g~~~~--~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARAl~~ 828 (1560)
+|++|++.+|+. |++||+.++.... ..++.. ..+.+.++.+ |++......+.+||||||||++|||||+.
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~ 150 (232)
T cd03218 78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKERE-----EKLEELLEEF--HITHLRKSKASSLSGGERRRVEIARALAT 150 (232)
T ss_pred EEecCCccccccCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 999999999986 9999998753211 111111 1223445554 66666677788999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhHhh
Q 000406 829 DPRILLLDEPTSALDSESESIVQQAIDKIS-VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLE 898 (1560)
Q Consensus 829 ~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l~~ 898 (1560)
+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 151 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 151 NPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 999999999999999999999999998874 48999999999988765 99999999999999999887753
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-39 Score=374.02 Aligned_cols=221 Identities=27% Similarity=0.444 Sum_probs=185.3
Q ss_pred cEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHHHhccE
Q 000406 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQI 751 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 751 (1560)
.|+++||+++|+.....++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.|
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48999999999743334589999999999999999999999999999999999999999999999999877766788899
Q ss_pred EEEecCCc--CccccHHHHHhcCCC--CCCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHHhc
Q 000406 752 GMVGQEPI--LFATSILENVLMGKE--NATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMI 827 (1560)
Q Consensus 752 ~~v~Q~~~--lf~~Tv~eNi~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARAl~ 827 (1560)
+||+|+|. ++..||.|||.++.. ....++..+.+ .+.++.+ |+.......+.+||||||||++|||||+
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~lAraL~ 156 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRV-----DEALLAV--NMLDFKTREPARLSGGQKQRVAVAGIIA 156 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHH-----HHHHHHC--CCHhHhhCCcccCCHHHHHHHHHHHHHH
Confidence 99999983 567799999987532 12222222111 1222222 3434445567799999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecCccccccCCEEEEEeCCeEEEecChhhHhhh
Q 000406 828 KDPRILLLDEPTSALDSESESIVQQAIDKISV--GRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLER 899 (1560)
Q Consensus 828 ~~p~illLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~~D~i~vl~~G~iv~~G~~~~l~~~ 899 (1560)
++|+||||||||++||+.+.+.+.+.|+++.+ |+|+|+|||+++.+..||+|++|++|++++.|++++++..
T Consensus 157 ~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (277)
T PRK13642 157 LRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFAT 230 (277)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999988743 8999999999999878999999999999999999988754
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-39 Score=376.09 Aligned_cols=219 Identities=28% Similarity=0.492 Sum_probs=184.4
Q ss_pred cEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecC--CccHHHHhc
Q 000406 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLK--SLQVKWLRT 749 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~--~~~~~~lr~ 749 (1560)
.|+++|++++|+. +..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++. ..+...+++
T Consensus 5 ~l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 5 ILKVEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred eEEEEeEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 4899999999963 245999999999999999999999999999999999999999999999999984 334556788
Q ss_pred cEEEEecCC--cCccccHHHHHhcCCCC--CCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHH
Q 000406 750 QIGMVGQEP--ILFATSILENVLMGKEN--ATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARA 825 (1560)
Q Consensus 750 ~i~~v~Q~~--~lf~~Tv~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARA 825 (1560)
.|+|+||++ .+++.|++||+.++... .+.++..+. +.+.++.+ |+....+..+.+||||||||++||||
T Consensus 83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~LS~G~~qrl~lara 155 (283)
T PRK13636 83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKR-----VDNALKRT--GIEHLKDKPTHCLSFGQKKRVAIAGV 155 (283)
T ss_pred hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHH-----HHHHHHHC--CChhhhhCCcccCCHHHHHHHHHHHH
Confidence 999999998 56788999999875321 122222111 12223333 55555667788999999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhHhhh
Q 000406 826 MIKDPRILLLDEPTSALDSESESIVQQAIDKISV--GRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLER 899 (1560)
Q Consensus 826 l~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l~~~ 899 (1560)
|+.+|+||||||||++||+.+...+.+.|+++.+ |+|||++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 156 L~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 232 (283)
T PRK13636 156 LVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 232 (283)
T ss_pred HHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999988743 8999999999999874 999999999999999999988653
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-39 Score=371.05 Aligned_cols=219 Identities=27% Similarity=0.459 Sum_probs=187.3
Q ss_pred CccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCC-----CccEEEECCEecC----
Q 000406 1311 PLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDP-----NQGKVMIEGVDLR---- 1381 (1560)
Q Consensus 1311 ~~~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p-----~~G~I~IdGvdi~---- 1381 (1560)
.+.|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|+|+.+| ++|+|.+||.++.
T Consensus 14 ~~~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~ 90 (265)
T PRK14252 14 QQKSEVNKLNFYYGG---YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSP 90 (265)
T ss_pred CceEEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccc
Confidence 456999999999963 3599999999999999999999999999999999999975 7999999998874
Q ss_pred CCCHHHHhhceEEEcCCCCCCCccHHHHHhcCCC--C-----CCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCC
Q 000406 1382 EINVKWLRKQTALVGQEPALFAGTIRDNIALGNP--K-----ASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLS 1454 (1560)
Q Consensus 1382 ~i~l~~LR~~I~~VpQdp~LF~gTIreNL~~g~~--~-----~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LS 1454 (1560)
......+|+.++|+||++.+|.+|++|||.++.. . ..++++.++++.+++.+ ++..........||
T Consensus 91 ~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS 163 (265)
T PRK14252 91 EVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWD-------EVKDRLGDLAFNLS 163 (265)
T ss_pred ccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCch-------hhhHHHhCCcccCC
Confidence 2345678889999999999999999999986421 1 11245556666555433 22333445567899
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHHHhh-cCEEEEEeCCEEEEecC
Q 000406 1455 GGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGS 1533 (1560)
Q Consensus 1455 GGQrQRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt 1533 (1560)
||||||++|||||+++|+||||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+
T Consensus 164 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~ 243 (265)
T PRK14252 164 GGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGA 243 (265)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999988777899999999999965 99999999999999999
Q ss_pred HHHHHh
Q 000406 1534 HETLLA 1539 (1560)
Q Consensus 1534 ~~eLl~ 1539 (1560)
++++..
T Consensus 244 ~~~~~~ 249 (265)
T PRK14252 244 TDTIFI 249 (265)
T ss_pred HHHHHh
Confidence 999976
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=363.97 Aligned_cols=198 Identities=31% Similarity=0.489 Sum_probs=168.1
Q ss_pred EEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhhceEE
Q 000406 1315 ELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTAL 1394 (1560)
Q Consensus 1315 ~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~~I~~ 1394 (1560)
+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++. .+|+.++|
T Consensus 1 ~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~ 72 (213)
T cd03235 1 EVEDLTVSYGG---HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGY 72 (213)
T ss_pred CcccceeEECC---EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEE
Confidence 46899999963 35999999999999999999999999999999999999999999999998874 46889999
Q ss_pred EcCCCCC---CCccHHHHHhcCCCC----------CCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 000406 1395 VGQEPAL---FAGTIRDNIALGNPK----------ASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRI 1461 (1560)
Q Consensus 1395 VpQdp~L---F~gTIreNL~~g~~~----------~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRL 1461 (1560)
+||++.+ |+.|++|||.++... ...+++.++++..++.++... ...+||||||||+
T Consensus 73 v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv 141 (213)
T cd03235 73 VPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADR-----------QIGELSGGQQQRV 141 (213)
T ss_pred eccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhC-----------CcccCCHHHHHHH
Confidence 9999986 668999999875321 012345566666666544332 3357999999999
Q ss_pred HHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCceEEEEecChHHHhh-cCEEEEEeCCEEEEec
Q 000406 1462 AIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVS-KRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYG 1532 (1560)
Q Consensus 1462 aLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~-~~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~G 1532 (1560)
+|||||+.+|+||||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++| +++.|
T Consensus 142 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 142 LLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 99999999999999999999999999999999999865 57899999999999876 8999999986 55554
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-39 Score=376.77 Aligned_cols=221 Identities=30% Similarity=0.465 Sum_probs=181.1
Q ss_pred ccEEEEEEEEEcCCCC--CccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCC----C-C
Q 000406 1312 LGIELKMVTFTYPSRP--EVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLRE----I-N 1384 (1560)
Q Consensus 1312 ~~I~~~nVsf~Y~~~~--~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~----i-~ 1384 (1560)
+.|+++||+++|+... ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.. . +
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 4699999999996432 1359999999999999999999999999999999999999999999999999852 2 4
Q ss_pred HHHHhhceEEEcCCC--CCCCccHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHHhCCCCcc-ccccCCCCCCChHHHH
Q 000406 1385 VKWLRKQTALVGQEP--ALFAGTIRDNIALGNP--KASWAEIEEAAEEAYIHKFISSLPQGYE-TQVGESGVQLSGGQKQ 1459 (1560)
Q Consensus 1385 l~~LR~~I~~VpQdp--~LF~gTIreNL~~g~~--~~sd~eI~~al~~a~l~~~I~~Lp~Gld-t~Vge~G~~LSGGQrQ 1459 (1560)
...+|+.|+|+||+| .+|..|++|||.++.. ....++..+.+ .+.+..+ |+. .........|||||||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~-----~~ll~~~--~L~~~~~~~~~~~LS~Gq~q 157 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKV-----PELLKLV--QLPEDYVKRSPFELSGGQKR 157 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHHc--CCChhHhcCChhhCCHHHHH
Confidence 567888999999998 4778899999987521 12333322221 1122221 221 1233455689999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHH
Q 000406 1460 RIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSK--RATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHET 1536 (1560)
Q Consensus 1460 RLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~--~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~e 1536 (1560)
|++|||||+.+|+||||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 158 rv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 237 (289)
T PRK13645 158 RVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFE 237 (289)
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999998753 7899999999998865 99999999999999999998
Q ss_pred HHh
Q 000406 1537 LLA 1539 (1560)
Q Consensus 1537 Ll~ 1539 (1560)
+++
T Consensus 238 ~~~ 240 (289)
T PRK13645 238 IFS 240 (289)
T ss_pred Hhc
Confidence 865
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-39 Score=374.48 Aligned_cols=220 Identities=30% Similarity=0.516 Sum_probs=185.5
Q ss_pred cEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHHHhccE
Q 000406 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQI 751 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 751 (1560)
.|+++||+++|+.. .+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++...+...+++.|
T Consensus 5 ~l~~~~l~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 5 IIRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred eEEEEEEEEEeCCC-CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 48999999999642 24599999999999999999999999999999999999999999999999999887777778899
Q ss_pred EEEecCC--cCccccHHHHHhcCCCC--CCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHHhc
Q 000406 752 GMVGQEP--ILFATSILENVLMGKEN--ATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMI 827 (1560)
Q Consensus 752 ~~v~Q~~--~lf~~Tv~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARAl~ 827 (1560)
+|++|++ .++..||+|||.++... ...++..+ .+.+.+..+ |+...+.....+||||||||++|||||+
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~~~LS~G~~qrv~laral~ 156 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVE-----RVDQALRQV--GMEDFLNREPHRLSGGQKQRVAIAGVLA 156 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHH-----HHHHHHHHc--CChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 9999998 45567999999886321 12222111 112223332 4445556667799999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecCccccccCCEEEEEeCCeEEEecChhhHhhh
Q 000406 828 KDPRILLLDEPTSALDSESESIVQQAIDKISV--GRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLER 899 (1560)
Q Consensus 828 ~~p~illLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~~D~i~vl~~G~iv~~G~~~~l~~~ 899 (1560)
.+|+||||||||++||+.+...+.+.|+++.+ |+|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 157 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13635 157 LQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKS 230 (279)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999999999999998753 8999999999999888999999999999999999888654
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=359.36 Aligned_cols=217 Identities=33% Similarity=0.505 Sum_probs=187.2
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCE---ecCCCCHHHHh
Q 000406 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGV---DLREINVKWLR 1389 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGv---di~~i~l~~LR 1389 (1560)
.|+++|++..|+. ..+++||||+|+.||.+|+.||||||||||+++|+|+..|++|.|.+||. |.++++ .-.
T Consensus 2 ~i~i~~~~~~~~~---~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~--~~~ 76 (345)
T COG1118 2 SIRINNVKKRFGA---FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLA--VRD 76 (345)
T ss_pred ceeehhhhhhccc---ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccc--hhh
Confidence 3788899998864 35899999999999999999999999999999999999999999999999 766633 334
Q ss_pred hceEEEcCCCCCCC-ccHHHHHhcCCC--------CCCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHH
Q 000406 1390 KQTALVGQEPALFA-GTIRDNIALGNP--------KASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQR 1460 (1560)
Q Consensus 1390 ~~I~~VpQdp~LF~-gTIreNL~~g~~--------~~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQR 1460 (1560)
++||+|+|+..||. .||++||.||.+ ......+.+.|+.++|..+-+..| .+||||||||
T Consensus 77 R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP-----------~QLSGGQrQR 145 (345)
T COG1118 77 RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYP-----------AQLSGGQRQR 145 (345)
T ss_pred cceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCc-----------hhcChHHHHH
Confidence 68999999999885 799999999852 122345666677777766555544 4799999999
Q ss_pred HHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHH
Q 000406 1461 IAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSK--RATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETL 1537 (1560)
Q Consensus 1461 LaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~--~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eL 1537 (1560)
+||||||...|++|+||||.++||+.-.+.+.+-|++... +.|+++|||+.+.+.. ||||+||++|+|...|+|+|.
T Consensus 146 VALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev 225 (345)
T COG1118 146 VALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEV 225 (345)
T ss_pred HHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHH
Confidence 9999999999999999999999999999999999998643 6899999999999865 999999999999999999999
Q ss_pred HhhccChHH
Q 000406 1538 LASHLNGVY 1546 (1560)
Q Consensus 1538 l~~~~~g~y 1546 (1560)
... .++.|
T Consensus 226 ~~~-P~s~f 233 (345)
T COG1118 226 YDH-PASRF 233 (345)
T ss_pred hcC-CCccc
Confidence 873 45544
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-39 Score=364.35 Aligned_cols=214 Identities=28% Similarity=0.479 Sum_probs=179.4
Q ss_pred cEEEEEEEEEcCCCC-CccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHH---H
Q 000406 672 KIEFKGVTFAYPSRP-ETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKW---L 747 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~---l 747 (1560)
.|+++||+++|+... ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+... +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 489999999997422 146999999999999999999999999999999999999999999999999998776543 3
Q ss_pred h-ccEEEEecCCcCccc-cHHHHHhcCCC--CCCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHH
Q 000406 748 R-TQIGMVGQEPILFAT-SILENVLMGKE--NATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALA 823 (1560)
Q Consensus 748 r-~~i~~v~Q~~~lf~~-Tv~eNi~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialA 823 (1560)
+ +.|+|++|++.+|+. |++||+.++.. ....++..+ .+.+.++.+ |++......+.+||||||||++||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LSgG~~qrl~la 157 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINS-----RALEMLAAV--GLEHRANHRPSELSGGERQRVAIA 157 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHH
Confidence 3 679999999998876 99999987421 111121111 122334444 566666777889999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCccccccCCEEEEEeCCeEEEecC
Q 000406 824 RAMIKDPRILLLDEPTSALDSESESIVQQAIDKIS--VGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGN 892 (1560)
Q Consensus 824 RAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~~D~i~vl~~G~iv~~G~ 892 (1560)
||++.+|+||||||||++||+.+...+.+.|+++. +|+|+|+|||+++.+..+|++++|++|++++.|+
T Consensus 158 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 158 RALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 99999999999999999999999999999999873 4899999999999998889999999999998775
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-39 Score=378.86 Aligned_cols=212 Identities=26% Similarity=0.414 Sum_probs=179.9
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhhce
Q 000406 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQT 1392 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~~I 1392 (1560)
.|+++||+++|++ .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... ...+|+++
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i 79 (303)
T TIGR01288 4 AIDLVGVSKSYGD---KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAI 79 (303)
T ss_pred EEEEEeEEEEeCC---eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcE
Confidence 4899999999963 3599999999999999999999999999999999999999999999999998754 35678899
Q ss_pred EEEcCCCCCCC-ccHHHHHhcCC--CCCCHHHHHH----HHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 000406 1393 ALVGQEPALFA-GTIRDNIALGN--PKASWAEIEE----AAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIAR 1465 (1560)
Q Consensus 1393 ~~VpQdp~LF~-gTIreNL~~g~--~~~sd~eI~~----al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLAR 1465 (1560)
+|+||++.+|. .|++||+.+.. ...+..+..+ +++..+ +++.+++.+ ..||||||||++|||
T Consensus 80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~-------l~~~~~~~~----~~LSgG~~qrv~la~ 148 (303)
T TIGR01288 80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFAR-------LESKADVRV----ALLSGGMKRRLTLAR 148 (303)
T ss_pred EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCC-------ChhHhcCch----hhCCHHHHHHHHHHH
Confidence 99999999885 69999997421 1123333322 222222 233344444 479999999999999
Q ss_pred HHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHHHh
Q 000406 1466 AILKGSRVLLLDEASSALDLESEKHVQDALRKVS-KRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLA 1539 (1560)
Q Consensus 1466 ALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~-~~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eLl~ 1539 (1560)
||+.+|++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++++
T Consensus 149 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 149 ALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999999999864 47899999999999976 99999999999999999999976
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-39 Score=366.72 Aligned_cols=216 Identities=29% Similarity=0.522 Sum_probs=183.8
Q ss_pred EEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHHHhccEE
Q 000406 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIG 752 (1560)
Q Consensus 673 i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~ 752 (1560)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... ++.++
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i~ 77 (236)
T TIGR03864 2 LEVAGLSFAYGA---RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARLG 77 (236)
T ss_pred EEEEeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhEE
Confidence 789999999963 45999999999999999999999999999999999999999999999999987765543 35899
Q ss_pred EEecCCcCc-cccHHHHHhcCCCC--CCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHHhccC
Q 000406 753 MVGQEPILF-ATSILENVLMGKEN--ATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKD 829 (1560)
Q Consensus 753 ~v~Q~~~lf-~~Tv~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARAl~~~ 829 (1560)
|++|++.++ ..|++||+.++... ...++.. ..+.++++.+ |++...+..+.+||||||||++|||||+++
T Consensus 78 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrl~laral~~~ 150 (236)
T TIGR03864 78 VVFQQPTLDLDLSVRQNLRYHAALHGLSRAEAR-----ERIAALLARL--GLAERADDKVRELNGGHRRRVEIARALLHR 150 (236)
T ss_pred EeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 999999875 46999999875321 1111111 1223445554 666667778889999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCccccccCCEEEEEeCCeEEEecChhhHhhh
Q 000406 830 PRILLLDEPTSALDSESESIVQQAIDKIS--VGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLER 899 (1560)
Q Consensus 830 p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~~D~i~vl~~G~iv~~G~~~~l~~~ 899 (1560)
|+||||||||++||+.+.+.+.+.|+++. +|+|+|++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 151 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 151 PALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred CCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 99999999999999999999999999874 48999999999999877999999999999999998887653
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=359.97 Aligned_cols=218 Identities=33% Similarity=0.524 Sum_probs=187.1
Q ss_pred cEEEEEEEEEcCCCCC---------------------ccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCcc
Q 000406 672 KIEFKGVTFAYPSRPE---------------------TVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKG 730 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~~~---------------------~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G 730 (1560)
.|+++||++-|+.++. ..-++|+||+|+.||+..|.|-||||||||+++|.|+++|+.|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 5899999998864321 2348899999999999999999999999999999999999999
Q ss_pred EEEECCeecCCccHHHHh----ccEEEEecCCcCccc-cHHHHHhcCCCCCC--H----HHHHHHHHHhhhHHHHHhCCC
Q 000406 731 LITLDGHDLKSLQVKWLR----TQIGMVGQEPILFAT-SILENVLMGKENAT--M----KEAVAACKAASAHSFISELPL 799 (1560)
Q Consensus 731 ~I~i~g~~i~~~~~~~lr----~~i~~v~Q~~~lf~~-Tv~eNi~~g~~~~~--~----~~~~~~~~~~~~~~~i~~l~~ 799 (1560)
+|+++|.|+..++.++|| +++++|+|+..|++. ||.||+.||.+-.. . +...++++.+
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~V----------- 152 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELV----------- 152 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHc-----------
Confidence 999999999999877654 579999999999986 99999999976322 1 2223333333
Q ss_pred CCCcccCCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCcccccc-C
Q 000406 800 GYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKIS--VGRTTIVIAHRLATVKN-A 876 (1560)
Q Consensus 800 gl~t~~~~~g~~LSgGQrQRialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~ 876 (1560)
|++..-...+.+||||+||||.|||||..+|+|||+|||+|||||--+..+|+.|.++. -+||+|+||||+++... .
T Consensus 153 gL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG 232 (386)
T COG4175 153 GLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIG 232 (386)
T ss_pred CchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhcc
Confidence 45555556677999999999999999999999999999999999999999999998774 37999999999999755 9
Q ss_pred CEEEEEeCCeEEEecChhhHhhhc
Q 000406 877 NTIVVLDQGSVVEIGNHRQLLERG 900 (1560)
Q Consensus 877 D~i~vl~~G~iv~~G~~~~l~~~~ 900 (1560)
|||.+|++|+|+..|+|+|++.+.
T Consensus 233 ~rIaimkdG~ivQ~Gtp~eIl~~P 256 (386)
T COG4175 233 DRIAIMKDGEIVQVGTPEEILLNP 256 (386)
T ss_pred ceEEEecCCeEEEeCCHHHHHcCc
Confidence 999999999999999999998653
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=365.48 Aligned_cols=208 Identities=34% Similarity=0.542 Sum_probs=174.3
Q ss_pred EEEEEEEEEcCCCC-CccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHH----HH
Q 000406 673 IEFKGVTFAYPSRP-ETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVK----WL 747 (1560)
Q Consensus 673 i~~~~vs~~y~~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~----~l 747 (1560)
|+++||+++|+... ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. ..
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 47899999996421 14699999999999999999999999999999999999999999999999998876532 24
Q ss_pred hccEEEEecCCcCccc-cHHHHHhcCCCCC--CHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHH
Q 000406 748 RTQIGMVGQEPILFAT-SILENVLMGKENA--TMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALAR 824 (1560)
Q Consensus 748 r~~i~~v~Q~~~lf~~-Tv~eNi~~g~~~~--~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialAR 824 (1560)
+++++|++|++.+|.. |++||+.++.... ...+. ...+.+.++.+ |++...+..+.+||||||||++|||
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~ 153 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKER-----RERAEELLERV--GLGDRLNHYPSELSGGQQQRVAIAR 153 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHH-----HHHHHHHHHHc--CCchhhhcChhhcCHHHHHHHHHHH
Confidence 5689999999999986 9999998854211 11111 11223445554 6666667778899999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCccccccCCEEEEEeCCeE
Q 000406 825 AMIKDPRILLLDEPTSALDSESESIVQQAIDKIS--VGRTTIVIAHRLATVKNANTIVVLDQGSV 887 (1560)
Q Consensus 825 Al~~~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~~D~i~vl~~G~i 887 (1560)
||+.+|+||||||||++||+.+++.+.+.|+++. .++|+|+|||+++.+..||+|++|++|++
T Consensus 154 al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 154 ALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 9999999999999999999999999999999874 38999999999998878999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=366.77 Aligned_cols=218 Identities=28% Similarity=0.454 Sum_probs=181.7
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCC-----ccEEEECCEecCC--CCH
Q 000406 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPN-----QGKVMIEGVDLRE--INV 1385 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~-----~G~I~IdGvdi~~--i~l 1385 (1560)
-++++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|+ +|+|.++|.++.. .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (252)
T PRK14272 4 LLSAQDVNIYYGD---KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDP 80 (252)
T ss_pred EEEEeeeEEEECC---EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCH
Confidence 3889999999963 46999999999999999999999999999999999999874 8999999999875 345
Q ss_pred HHHhhceEEEcCCCCCCC-ccHHHHHhcCCC--CC-CHHHHHHH----HHHHhHHHHHHhCCCCccccccCCCCCCChHH
Q 000406 1386 KWLRKQTALVGQEPALFA-GTIRDNIALGNP--KA-SWAEIEEA----AEEAYIHKFISSLPQGYETQVGESGVQLSGGQ 1457 (1560)
Q Consensus 1386 ~~LR~~I~~VpQdp~LF~-gTIreNL~~g~~--~~-sd~eI~~a----l~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQ 1457 (1560)
..+|+.++|+||++.+|. .|++||+.++.. .. .++++.+. ++..++.+. ++..++.+ ..+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---l~~~~~~~----~~~LS~G~ 153 (252)
T PRK14272 81 VAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDE---VKDRLKTP----ATGLSGGQ 153 (252)
T ss_pred HHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchh---hhhhhcCC----cccCCHHH
Confidence 577889999999999998 499999986421 11 23333322 222222221 12233433 45799999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHH
Q 000406 1458 KQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHET 1536 (1560)
Q Consensus 1458 rQRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~e 1536 (1560)
|||++|||||+++|+||||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 154 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 233 (252)
T PRK14272 154 QQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQ 233 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999988777999999999999986 99999999999999999999
Q ss_pred HHhh
Q 000406 1537 LLAS 1540 (1560)
Q Consensus 1537 Ll~~ 1540 (1560)
++++
T Consensus 234 ~~~~ 237 (252)
T PRK14272 234 LFTN 237 (252)
T ss_pred HHhC
Confidence 9873
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=370.09 Aligned_cols=219 Identities=32% Similarity=0.464 Sum_probs=186.3
Q ss_pred ccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCC-----CccEEEECCEecCC--CC
Q 000406 1312 LGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDP-----NQGKVMIEGVDLRE--IN 1384 (1560)
Q Consensus 1312 ~~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p-----~~G~I~IdGvdi~~--i~ 1384 (1560)
.-|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||.++.. .+
T Consensus 19 ~~l~~~nl~~~~~~---~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~ 95 (274)
T PRK14265 19 SVFEVEGVKVFYGG---FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQIN 95 (274)
T ss_pred ceEEEeeEEEEeCC---eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccch
Confidence 36999999999963 3599999999999999999999999999999999999863 68999999999864 34
Q ss_pred HHHHhhceEEEcCCCCCCCccHHHHHhcCCCC-----CCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHH
Q 000406 1385 VKWLRKQTALVGQEPALFAGTIRDNIALGNPK-----ASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQ 1459 (1560)
Q Consensus 1385 l~~LR~~I~~VpQdp~LF~gTIreNL~~g~~~-----~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQ 1459 (1560)
...+|+.|+|+||++.+|+.|+.+||.++... ..++++.++++.+++.+.+.. ........|||||||
T Consensus 96 ~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq~q 168 (274)
T PRK14265 96 SVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKD-------KLKEKGTALSGGQQQ 168 (274)
T ss_pred hHHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHH-------HhcCCcccCCHHHHH
Confidence 45678999999999999999999999875211 113345556666665443321 233445689999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHHHhh-cCEEEEEe---------CCEEE
Q 000406 1460 RIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIRE-ANMIAVVR---------DGAVV 1529 (1560)
Q Consensus 1460 RLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlsti~~-aDrIlVLd---------~G~Iv 1529 (1560)
|++|||||+++|+||||||||++||+.+...+.+.|++..+++|||+|||+++.+.. ||+|++|+ +|+++
T Consensus 169 rv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~ 248 (274)
T PRK14265 169 RLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLV 248 (274)
T ss_pred HHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEE
Confidence 999999999999999999999999999999999999998777899999999999865 99999997 89999
Q ss_pred EecCHHHHHhh
Q 000406 1530 EYGSHETLLAS 1540 (1560)
Q Consensus 1530 E~Gt~~eLl~~ 1540 (1560)
+.|+++++..+
T Consensus 249 ~~g~~~~~~~~ 259 (274)
T PRK14265 249 EFSPTEQMFGS 259 (274)
T ss_pred EeCCHHHHHhC
Confidence 99999999863
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-39 Score=366.47 Aligned_cols=210 Identities=34% Similarity=0.515 Sum_probs=182.1
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhhceE
Q 000406 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTA 1393 (1560)
Q Consensus 1314 I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~~I~ 1393 (1560)
|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+. .++.++
T Consensus 1 l~~~~l~~~~~~---~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~ 75 (232)
T cd03300 1 IELENVSKFYGG---FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVN 75 (232)
T ss_pred CEEEeEEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceE
Confidence 579999999963 359999999999999999999999999999999999999999999999999987664 367899
Q ss_pred EEcCCCCCCCc-cHHHHHhcCC------CCCCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 000406 1394 LVGQEPALFAG-TIRDNIALGN------PKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARA 1466 (1560)
Q Consensus 1394 ~VpQdp~LF~g-TIreNL~~g~------~~~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLARA 1466 (1560)
|+||++.+|.+ |+++|+.++. +...++++.++++..++.+++... ...||+|||||++||||
T Consensus 76 ~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~lS~G~~qrl~lara 144 (232)
T cd03300 76 TVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRK-----------PSQLSGGQQQRVAIARA 144 (232)
T ss_pred EEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCC-----------hhhCCHHHHHHHHHHHH
Confidence 99999999975 9999998642 111123455566666665554443 35799999999999999
Q ss_pred HccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHHHh
Q 000406 1467 ILKGSRVLLLDEASSALDLESEKHVQDALRKVSK--RATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLA 1539 (1560)
Q Consensus 1467 LLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~--~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eLl~ 1539 (1560)
|+++|+||||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 145 l~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~ 220 (232)
T cd03300 145 LVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYE 220 (232)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHh
Confidence 9999999999999999999999999999998753 7899999999999866 99999999999999999999886
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-39 Score=368.78 Aligned_cols=220 Identities=20% Similarity=0.387 Sum_probs=184.2
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHH-hhc
Q 000406 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWL-RKQ 1391 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~L-R~~ 1391 (1560)
-++++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+...+ |..
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (255)
T PRK11300 5 LLSVSGLMMRFGG---LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81 (255)
T ss_pred eEEEeeEEEEECC---EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcC
Confidence 4899999999963 469999999999999999999999999999999999999999999999999988876654 456
Q ss_pred eEEEcCCCCCCCc-cHHHHHhcCCCCCC--------------HHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChH
Q 000406 1392 TALVGQEPALFAG-TIRDNIALGNPKAS--------------WAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGG 1456 (1560)
Q Consensus 1392 I~~VpQdp~LF~g-TIreNL~~g~~~~s--------------d~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGG 1456 (1560)
++|+||++.+|.+ |++|||.++..... ..+..+ ....+.++++.+ |++........+||||
T Consensus 82 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~--gl~~~~~~~~~~LS~G 157 (255)
T PRK11300 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESE--ALDRAATWLERV--GLLEHANRQAGNLAYG 157 (255)
T ss_pred eEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhH--HHHHHHHHHHhC--ChhhhhhCChhhCCHH
Confidence 9999999999986 99999987521000 000000 011223344443 5555556667789999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CceEEEEecChHHHhh-cCEEEEEeCCEEEEecC
Q 000406 1457 QKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSK--RATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGS 1533 (1560)
Q Consensus 1457 QrQRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~--~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt 1533 (1560)
||||++|||||+.+|+||||||||++||+.+.+.+.+.|++..+ ++|||+|||+++.+.. ||+|++|++|++++.|+
T Consensus 158 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~ 237 (255)
T PRK11300 158 QQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGT 237 (255)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCC
Confidence 99999999999999999999999999999999999999998643 6899999999999866 99999999999999999
Q ss_pred HHHHHh
Q 000406 1534 HETLLA 1539 (1560)
Q Consensus 1534 ~~eLl~ 1539 (1560)
++++..
T Consensus 238 ~~~~~~ 243 (255)
T PRK11300 238 PEEIRN 243 (255)
T ss_pred HHHHhh
Confidence 999875
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-39 Score=363.45 Aligned_cols=208 Identities=28% Similarity=0.370 Sum_probs=176.4
Q ss_pred cEEEEEEEEEcCCCCC-ccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHH---H
Q 000406 1313 GIELKMVTFTYPSRPE-VTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKW---L 1388 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~~~-~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~---L 1388 (1560)
-|+++||+++|+.... .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+... +
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 4899999999964211 25999999999999999999999999999999999999999999999999998887653 2
Q ss_pred -hhceEEEcCCCCCCCc-cHHHHHhcCC--CCCC----HHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHH
Q 000406 1389 -RKQTALVGQEPALFAG-TIRDNIALGN--PKAS----WAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQR 1460 (1560)
Q Consensus 1389 -R~~I~~VpQdp~LF~g-TIreNL~~g~--~~~s----d~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQR 1460 (1560)
++.++|+||++.+|.. |++||+.++. .... .+++.++++..++.+++... ...||||||||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~Ge~qr 154 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHL-----------PAQLSGGEQQR 154 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCC-----------hhhCCHHHHHH
Confidence 3679999999999875 9999997531 1111 23455666666665544333 34799999999
Q ss_pred HHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CceEEEEecChHHHhhcCEEEEEeCCEEEEe
Q 000406 1461 IAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSK--RATTIVVAHRLSTIREANMIAVVRDGAVVEY 1531 (1560)
Q Consensus 1461 LaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~--~~TvI~IAHRlsti~~aDrIlVLd~G~IvE~ 1531 (1560)
++|||||+.+|+||||||||++||+.+.+.+.+.|++..+ ++|||+|||+++.+..||+|++|++|+|+|.
T Consensus 155 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 9999999999999999999999999999999999998743 6899999999999988999999999999874
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-39 Score=369.45 Aligned_cols=218 Identities=29% Similarity=0.519 Sum_probs=185.3
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCC-----ccEEEECCEecCC--CCH
Q 000406 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPN-----QGKVMIEGVDLRE--INV 1385 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~-----~G~I~IdGvdi~~--i~l 1385 (1560)
.|+++||+++|+. ..+|+|+||+|++||++||+|+||||||||+++|+|+++|+ +|+|.++|.++.. .+.
T Consensus 7 ~l~~~nl~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~ 83 (261)
T PRK14258 7 AIKVNNLSFYYDT---QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNL 83 (261)
T ss_pred eEEEeeEEEEeCC---eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccch
Confidence 5999999999963 35999999999999999999999999999999999999985 8999999999853 345
Q ss_pred HHHhhceEEEcCCCCCCCccHHHHHhcCC------CCCC-HHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHH
Q 000406 1386 KWLRKQTALVGQEPALFAGTIRDNIALGN------PKAS-WAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQK 1458 (1560)
Q Consensus 1386 ~~LR~~I~~VpQdp~LF~gTIreNL~~g~------~~~s-d~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQr 1458 (1560)
..+|+.++|+||++.+|..|++||+.++. +... ++++.++++..++.+++. ...+..+..||||||
T Consensus 84 ~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq~ 156 (261)
T PRK14258 84 NRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIK-------HKIHKSALDLSGGQQ 156 (261)
T ss_pred HHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhh-------hHhcCCcccCCHHHH
Confidence 67888999999999999999999998641 1111 233455666665544332 223455668999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc--CCceEEEEecChHHHhh-cCEEEEEeC-----CEEEE
Q 000406 1459 QRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVS--KRATTIVVAHRLSTIRE-ANMIAVVRD-----GAVVE 1530 (1560)
Q Consensus 1459 QRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~--~~~TvI~IAHRlsti~~-aDrIlVLd~-----G~IvE 1530 (1560)
||++|||||+++|+||||||||++||+++...+.+.|+++. .++|+|+|||+++.+.. ||+|++|++ |+|++
T Consensus 157 qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~ 236 (261)
T PRK14258 157 QRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVE 236 (261)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEE
Confidence 99999999999999999999999999999999999999853 47999999999999875 999999999 99999
Q ss_pred ecCHHHHHhh
Q 000406 1531 YGSHETLLAS 1540 (1560)
Q Consensus 1531 ~Gt~~eLl~~ 1540 (1560)
.|+++++..+
T Consensus 237 ~~~~~~~~~~ 246 (261)
T PRK14258 237 FGLTKKIFNS 246 (261)
T ss_pred eCCHHHHHhC
Confidence 9999999863
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-39 Score=374.04 Aligned_cols=213 Identities=29% Similarity=0.499 Sum_probs=180.9
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCC--CCHHHHhhc
Q 000406 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLRE--INVKWLRKQ 1391 (1560)
Q Consensus 1314 I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~--i~l~~LR~~ 1391 (1560)
|+++||+++|+. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.. .+...+|+.
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 2 LETRDLKYSYPD--GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred EEEEEEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence 789999999963 2359999999999999999999999999999999999999999999999999853 234567899
Q ss_pred eEEEcCCC--CCCCccHHHHHhcCCC--CCCH----HHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 000406 1392 TALVGQEP--ALFAGTIRDNIALGNP--KASW----AEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAI 1463 (1560)
Q Consensus 1392 I~~VpQdp--~LF~gTIreNL~~g~~--~~sd----~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaL 1463 (1560)
|+|+||++ .+|..|++|||.++.. ..+. +++.++++..++.++. + .....||||||||++|
T Consensus 80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-------~----~~~~~LS~Gq~qrv~l 148 (275)
T PRK13639 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFE-------N----KPPHHLSGGQKKRVAI 148 (275)
T ss_pred eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhh-------c----CChhhCCHHHHHHHHH
Confidence 99999998 5788999999986421 1222 2344455555443222 2 2345799999999999
Q ss_pred HHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHHHh
Q 000406 1464 ARAILKGSRVLLLDEASSALDLESEKHVQDALRKVS-KRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLA 1539 (1560)
Q Consensus 1464 ARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~-~~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eLl~ 1539 (1560)
||||+.+|+||||||||++||+.+...+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++++
T Consensus 149 aral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (275)
T PRK13639 149 AGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFS 226 (275)
T ss_pred HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999999875 47899999999999875 99999999999999999999875
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-39 Score=372.63 Aligned_cols=219 Identities=32% Similarity=0.520 Sum_probs=182.6
Q ss_pred cccEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCC-----CccEEEECCeecCC--c
Q 000406 670 SGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDP-----TKGLITLDGHDLKS--L 742 (1560)
Q Consensus 670 ~g~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~-----~~G~I~i~g~~i~~--~ 742 (1560)
.+.|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|+++.. .
T Consensus 17 ~~~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~ 93 (267)
T PRK14235 17 EIKMRARDVSVFYGE---KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL 93 (267)
T ss_pred CceEEEEeEEEEECC---EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc
Confidence 457999999999963 4599999999999999999999999999999999999975 89999999999864 3
Q ss_pred cHHHHhccEEEEecCCcCccccHHHHHhcCCCC--C--CHH----HHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCCh
Q 000406 743 QVKWLRTQIGMVGQEPILFATSILENVLMGKEN--A--TMK----EAVAACKAASAHSFISELPLGYDTQVGDRGTQLSG 814 (1560)
Q Consensus 743 ~~~~lr~~i~~v~Q~~~lf~~Tv~eNi~~g~~~--~--~~~----~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSg 814 (1560)
+...+|+.|+||+|++.+|+.|+.||+.++... . ... ++.++++..++.+++ ....+..+.+|||
T Consensus 94 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSg 166 (267)
T PRK14235 94 DVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEV-------KDRLHEPGTGLSG 166 (267)
T ss_pred chHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhh-------hHHhhCCcccCCH
Confidence 455678889999999999988999999875311 0 111 122222222221111 1234566789999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCcccccc-CCEEEEEeCCeEEEecCh
Q 000406 815 GQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNH 893 (1560)
Q Consensus 815 GQrQRialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~ 893 (1560)
|||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|++
T Consensus 167 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~ 246 (267)
T PRK14235 167 GQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDT 246 (267)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999988668899999999999865 999999999999999999
Q ss_pred hhHhh
Q 000406 894 RQLLE 898 (1560)
Q Consensus 894 ~~l~~ 898 (1560)
+++..
T Consensus 247 ~~~~~ 251 (267)
T PRK14235 247 EKMFT 251 (267)
T ss_pred HHHHh
Confidence 88764
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-39 Score=387.99 Aligned_cols=216 Identities=31% Similarity=0.488 Sum_probs=183.9
Q ss_pred cEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHHHhccE
Q 000406 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQI 751 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 751 (1560)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. +++|
T Consensus 3 ~l~i~~l~~~~~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~--~~~i 77 (369)
T PRK11000 3 SVTLRNVTKAYGD---VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA--ERGV 77 (369)
T ss_pred EEEEEEEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHh--HCCE
Confidence 4899999999963 4589999999999999999999999999999999999999999999999999876543 4679
Q ss_pred EEEecCCcCccc-cHHHHHhcCCCC--CCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHHhcc
Q 000406 752 GMVGQEPILFAT-SILENVLMGKEN--ATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIK 828 (1560)
Q Consensus 752 ~~v~Q~~~lf~~-Tv~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARAl~~ 828 (1560)
+||+|++.+|+. ||+|||.++... ...++..+ .+.+.++.+ |++...+....+|||||||||+|||||+.
T Consensus 78 ~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~-----~~~~~l~~l--gL~~~~~~~~~~LSgGq~QRvaLAraL~~ 150 (369)
T PRK11000 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQ-----RVNQVAEVL--QLAHLLDRKPKALSGGQRQRVAIGRTLVA 150 (369)
T ss_pred EEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHH-----HHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhc
Confidence 999999999975 999999986431 12222111 122334443 55555677778999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhHhhh
Q 000406 829 DPRILLLDEPTSALDSESESIVQQAIDKIS--VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLER 899 (1560)
Q Consensus 829 ~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l~~~ 899 (1560)
+|+|||||||||+||+.+++.+.+.|+++. .|.|+|+|||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 151 ~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~ 224 (369)
T PRK11000 151 EPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 224 (369)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999999998874 38999999999998865 999999999999999999998753
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-39 Score=363.50 Aligned_cols=211 Identities=26% Similarity=0.450 Sum_probs=176.9
Q ss_pred EEEEEEEEEcCCCCC-ccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHHHhccE
Q 000406 673 IEFKGVTFAYPSRPE-TVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQI 751 (1560)
Q Consensus 673 i~~~~vs~~y~~~~~-~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 751 (1560)
|+++||+++|+.... .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.. ....+++++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 789999999974311 169999999999999999999999999999999999999999999999999875 345667899
Q ss_pred EEEecCCcCccc-cHHHHHhcCCCC--CCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHHhcc
Q 000406 752 GMVGQEPILFAT-SILENVLMGKEN--ATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIK 828 (1560)
Q Consensus 752 ~~v~Q~~~lf~~-Tv~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARAl~~ 828 (1560)
+|++|++.+|.. |++||+.+.... ...++..+ .+.+.++.+ |++......+.+||||||||++|||||+.
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~~ 153 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTA-----RLEELADRL--GMEELLDRRVGGFSTGMRQKVAIARALVH 153 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCHHHHhhhhhhcCHHHHHHHHHHHHHhc
Confidence 999999999985 999999764211 11111111 122344444 56566677788999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCcccccc-CCEEEEEeCCeEEEec
Q 000406 829 DPRILLLDEPTSALDSESESIVQQAIDKIS-VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIG 891 (1560)
Q Consensus 829 ~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G 891 (1560)
+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 154 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 154 DPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 999999999999999999999999998874 58999999999998865 9999999999998754
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-39 Score=359.64 Aligned_cols=210 Identities=29% Similarity=0.497 Sum_probs=186.7
Q ss_pred EEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCH----HHHhh
Q 000406 1315 ELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINV----KWLRK 1390 (1560)
Q Consensus 1315 ~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l----~~LR~ 1390 (1560)
.+.|+.|+|+.+ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+. ...|+
T Consensus 2 ~~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 2 QVTNGYFSWGSG--LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred eeeeeEEecCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 578999999743 469999999999999999999999999999999999999999999999998876542 34567
Q ss_pred ceEEEcCCCCCCCccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHccC
Q 000406 1391 QTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKG 1470 (1560)
Q Consensus 1391 ~I~~VpQdp~LF~gTIreNL~~g~~~~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLARALLr~ 1470 (1560)
.++|++|++.+|+.|++|||.++.+ ..+++..++++..++.+.+..+|.|+++.++....+||||||||++|||||+++
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~ 158 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGSP-FNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQN 158 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcCc-CCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhC
Confidence 8999999999999999999998643 345667788888899888999999999999988899999999999999999999
Q ss_pred CCEEEEeCCCcCCCHHHHHHHHH--HHHHhc-CCceEEEEecChHHHhhcCEEEEEeCCE
Q 000406 1471 SRVLLLDEASSALDLESEKHVQD--ALRKVS-KRATTIVVAHRLSTIREANMIAVVRDGA 1527 (1560)
Q Consensus 1471 p~ILILDEaTSaLD~~Te~~I~~--~L~~~~-~~~TvI~IAHRlsti~~aDrIlVLd~G~ 1527 (1560)
|+||||||||++||+.+...+.+ .++... .++|+|++||+++.+..||+|++|++|.
T Consensus 159 p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 159 TNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred CCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 99999999999999999998887 454433 3689999999999998899999999884
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-39 Score=361.32 Aligned_cols=204 Identities=27% Similarity=0.411 Sum_probs=172.9
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHH---Hhh
Q 000406 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKW---LRK 1390 (1560)
Q Consensus 1314 I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~---LR~ 1390 (1560)
|+++||+++|+. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++..++... +|+
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 2 IRFEHVSKAYLG--GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred EEEEeeEEEecC--CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence 789999999952 246999999999999999999999999999999999999999999999999998876543 688
Q ss_pred ceEEEcCCCCC-CCccHHHHHhcCC--CCCCHH----HHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 000406 1391 QTALVGQEPAL-FAGTIRDNIALGN--PKASWA----EIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAI 1463 (1560)
Q Consensus 1391 ~I~~VpQdp~L-F~gTIreNL~~g~--~~~sd~----eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaL 1463 (1560)
.++|+||++.+ +..|++||+.++. ...+.+ ++.++++..++.+... .....||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~l 148 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAK-----------NFPIQLSGGEQQRVGI 148 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhh-----------CCchhCCHHHHHHHHH
Confidence 99999999987 4679999998742 122333 3444555555544332 3345799999999999
Q ss_pred HHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCceEEEEecChHHHhh-cCEEEEEeCCEEEE
Q 000406 1464 ARAILKGSRVLLLDEASSALDLESEKHVQDALRKVS-KRATTIVVAHRLSTIRE-ANMIAVVRDGAVVE 1530 (1560)
Q Consensus 1464 ARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~-~~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE 1530 (1560)
||||+++|++|||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|+++.
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 149 ARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 999999999999999999999999999999999874 46899999999999976 89999999999854
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-39 Score=358.82 Aligned_cols=201 Identities=32% Similarity=0.526 Sum_probs=174.1
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhhceE
Q 000406 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTA 1393 (1560)
Q Consensus 1314 I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~~I~ 1393 (1560)
|+++|++++|++. . .|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+. .|+.++
T Consensus 1 i~~~~l~~~~~~~---~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 73 (211)
T cd03298 1 VRLDKIRFSYGEQ---P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVS 73 (211)
T ss_pred CEEEeEEEEeCCE---e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEE
Confidence 5799999999632 2 39999999999999999999999999999999999999999999999987654 367899
Q ss_pred EEcCCCCCCCc-cHHHHHhcCCC-C-----CCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 000406 1394 LVGQEPALFAG-TIRDNIALGNP-K-----ASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARA 1466 (1560)
Q Consensus 1394 ~VpQdp~LF~g-TIreNL~~g~~-~-----~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLARA 1466 (1560)
|+||++.+|.+ |++||+.++.. . ..++++.++++..++.+.....| ..||||||||++||||
T Consensus 74 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~ia~a 142 (211)
T cd03298 74 MLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLP-----------GELSGGERQRVALARV 142 (211)
T ss_pred EEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCc-----------ccCCHHHHHHHHHHHH
Confidence 99999999975 99999986531 1 12345677777777766554443 3799999999999999
Q ss_pred HccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc--CCceEEEEecChHHHhh-cCEEEEEeCCEEEEec
Q 000406 1467 ILKGSRVLLLDEASSALDLESEKHVQDALRKVS--KRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYG 1532 (1560)
Q Consensus 1467 LLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~--~~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~G 1532 (1560)
|+++|+||||||||++||+++...+.+.|++.. .++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 143 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 143 LVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 999999999999999999999999999999875 37899999999999976 9999999999998865
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=372.64 Aligned_cols=218 Identities=27% Similarity=0.434 Sum_probs=183.2
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccC-----CCccEEEECCEecCCC--CH
Q 000406 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYD-----PNQGKVMIEGVDLREI--NV 1385 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~-----p~~G~I~IdGvdi~~i--~l 1385 (1560)
.|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+.+ |++|+|.+||.++... +.
T Consensus 39 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~ 115 (286)
T PRK14275 39 HVVAKNFSIYYGE---FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDE 115 (286)
T ss_pred EEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccch
Confidence 5899999999963 359999999999999999999999999999999999864 4999999999998653 33
Q ss_pred HHHhhceEEEcCCCCCCCccHHHHHhcCCC--CC-C----HHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHH
Q 000406 1386 KWLRKQTALVGQEPALFAGTIRDNIALGNP--KA-S----WAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQK 1458 (1560)
Q Consensus 1386 ~~LR~~I~~VpQdp~LF~gTIreNL~~g~~--~~-s----d~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQr 1458 (1560)
..+|+.++||||++.+|.+|++|||.++.. .. + ++++.++++..++.+.+ ..........||||||
T Consensus 116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LSgGq~ 188 (286)
T PRK14275 116 VLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEV-------SDRLDKNALGLSGGQQ 188 (286)
T ss_pred HHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccch-------hhHhhCChhhCCHHHH
Confidence 467889999999999999999999987421 11 1 12344455554443221 1122344567999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHH
Q 000406 1459 QRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETL 1537 (1560)
Q Consensus 1459 QRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eL 1537 (1560)
||++|||||+.+|+||||||||++||+.+.+.+.+.|++..+++|||+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 189 qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~ 268 (286)
T PRK14275 189 QRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQL 268 (286)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988767899999999999866 999999999999999999999
Q ss_pred Hhh
Q 000406 1538 LAS 1540 (1560)
Q Consensus 1538 l~~ 1540 (1560)
.++
T Consensus 269 ~~~ 271 (286)
T PRK14275 269 FTN 271 (286)
T ss_pred HhC
Confidence 863
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=367.53 Aligned_cols=217 Identities=29% Similarity=0.428 Sum_probs=187.7
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCC-----CccEEEECCEecCCC--CH
Q 000406 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDP-----NQGKVMIEGVDLREI--NV 1385 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p-----~~G~I~IdGvdi~~i--~l 1385 (1560)
.+.+++++++|.. .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||.++... ..
T Consensus 8 ~~~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 84 (261)
T PRK14263 8 VMDCKLDKIFYGN---FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDP 84 (261)
T ss_pred eEEEEeEEEEeCC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccch
Confidence 5899999999953 4699999999999999999999999999999999999986 799999999998653 44
Q ss_pred HHHhhceEEEcCCCCCCCccHHHHHhcCCC-----CCCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHH
Q 000406 1386 KWLRKQTALVGQEPALFAGTIRDNIALGNP-----KASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQR 1460 (1560)
Q Consensus 1386 ~~LR~~I~~VpQdp~LF~gTIreNL~~g~~-----~~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQR 1460 (1560)
..+|+.++|+||++.+|..|++|||.++.. ....+++.++++.+++.+.+.. ..++...+||||||||
T Consensus 85 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LS~G~~qr 157 (261)
T PRK14263 85 VVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKD-------KLKVSGLSLSGGQQQR 157 (261)
T ss_pred HhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhh-------hhhCCcccCCHHHHHH
Confidence 567889999999999999999999987521 1112456677777766544332 2345566899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHHHhh-cCEEEEEe--------CCEEEEe
Q 000406 1461 IAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIRE-ANMIAVVR--------DGAVVEY 1531 (1560)
Q Consensus 1461 LaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlsti~~-aDrIlVLd--------~G~IvE~ 1531 (1560)
++|||||+++|+||||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||||++|+ +|++++.
T Consensus 158 v~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~ 237 (261)
T PRK14263 158 LCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEM 237 (261)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEe
Confidence 99999999999999999999999999999999999998777899999999999865 99999996 8999999
Q ss_pred cCHHHHHh
Q 000406 1532 GSHETLLA 1539 (1560)
Q Consensus 1532 Gt~~eLl~ 1539 (1560)
|+++++++
T Consensus 238 g~~~~~~~ 245 (261)
T PRK14263 238 GPTAQIFQ 245 (261)
T ss_pred CCHHHHHh
Confidence 99999986
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-39 Score=380.47 Aligned_cols=227 Identities=28% Similarity=0.421 Sum_probs=187.0
Q ss_pred cEEEEEEEEEcCCCC----------CccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCC
Q 000406 672 KIEFKGVTFAYPSRP----------ETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKS 741 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~~----------~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~ 741 (1560)
-|+++|++++|+... ...+|+||||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 589999999996321 2468999999999999999999999999999999999999999999999999988
Q ss_pred ccHH---HHhccEEEEecCC--cCcc-ccHHHHHhcCCC----CCCHHHHHHHHHHhhhHHHHHhCCCCCC-cccCCCCC
Q 000406 742 LQVK---WLRTQIGMVGQEP--ILFA-TSILENVLMGKE----NATMKEAVAACKAASAHSFISELPLGYD-TQVGDRGT 810 (1560)
Q Consensus 742 ~~~~---~lr~~i~~v~Q~~--~lf~-~Tv~eNi~~g~~----~~~~~~~~~~~~~~~~~~~i~~l~~gl~-t~~~~~g~ 810 (1560)
++.. .+|++|+||+|+| .|++ .||.|||.++.. ..+.++..+.+ .+.++.+ |++ ...+..+.
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~-----~~~l~~v--gl~~~~~~~~p~ 160 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRV-----KAMMLKV--GLLPNLINRYPH 160 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHH-----HHHHHHc--CCChHHhcCCcc
Confidence 7644 3677899999998 4775 599999975321 12322222211 2234443 442 34567788
Q ss_pred CCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCcccccc-CCEEEEEeCCeE
Q 000406 811 QLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKIS--VGRTTIVIAHRLATVKN-ANTIVVLDQGSV 887 (1560)
Q Consensus 811 ~LSgGQrQRialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~D~i~vl~~G~i 887 (1560)
+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|+++. .+.|+|+|||+++.+.. ||+|+||++|+|
T Consensus 161 ~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~i 240 (331)
T PRK15079 161 EFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHA 240 (331)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999874 38999999999999976 999999999999
Q ss_pred EEecChhhHhhhc-chHHH
Q 000406 888 VEIGNHRQLLERG-GAYHD 905 (1560)
Q Consensus 888 v~~G~~~~l~~~~-~~~~~ 905 (1560)
++.|++++++... ..|.+
T Consensus 241 ve~g~~~~i~~~~~~py~~ 259 (331)
T PRK15079 241 VELGTYDEVYHNPLHPYTK 259 (331)
T ss_pred EEEcCHHHHHcCCCCHHHH
Confidence 9999999987643 34543
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=374.98 Aligned_cols=217 Identities=29% Similarity=0.483 Sum_probs=185.6
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccC-----CCccEEEECCEecCCC--CH
Q 000406 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYD-----PNQGKVMIEGVDLREI--NV 1385 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~-----p~~G~I~IdGvdi~~i--~l 1385 (1560)
.|+++||+++|+. .++|+++||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.++... +.
T Consensus 45 ~l~i~nl~~~~~~---~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~ 121 (305)
T PRK14264 45 KLSVEDLDVYYGD---DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNL 121 (305)
T ss_pred eEEEEEEEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccH
Confidence 5999999999964 359999999999999999999999999999999999986 6899999999998753 45
Q ss_pred HHHhhceEEEcCCCCCCCccHHHHHhcCCCC-------------------CCHHHHHHHHHHHhHHHHHHhCCCCccccc
Q 000406 1386 KWLRKQTALVGQEPALFAGTIRDNIALGNPK-------------------ASWAEIEEAAEEAYIHKFISSLPQGYETQV 1446 (1560)
Q Consensus 1386 ~~LR~~I~~VpQdp~LF~gTIreNL~~g~~~-------------------~sd~eI~~al~~a~l~~~I~~Lp~Gldt~V 1446 (1560)
..+|+.++||||++.+|++||+||+.++... ..++++.++++.+++. .++++.+
T Consensus 122 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~ 194 (305)
T PRK14264 122 VELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALW-------DEVNDRL 194 (305)
T ss_pred HHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCc-------hhhhHHh
Confidence 6788999999999999999999999865210 0122344444444432 2344455
Q ss_pred cCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHHHhh-cCEE-EEEe
Q 000406 1447 GESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIRE-ANMI-AVVR 1524 (1560)
Q Consensus 1447 ge~G~~LSGGQrQRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlsti~~-aDrI-lVLd 1524 (1560)
.....+||||||||++|||||+++|+||||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+| ++|+
T Consensus 195 ~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l~ 274 (305)
T PRK14264 195 DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLT 274 (305)
T ss_pred cCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEec
Confidence 6667889999999999999999999999999999999999999999999998777899999999999876 9997 5679
Q ss_pred CCEEEEecCHHHHHh
Q 000406 1525 DGAVVEYGSHETLLA 1539 (1560)
Q Consensus 1525 ~G~IvE~Gt~~eLl~ 1539 (1560)
+|+|++.|+++++.+
T Consensus 275 ~G~i~~~g~~~~~~~ 289 (305)
T PRK14264 275 GGELVEYDDTDKIFE 289 (305)
T ss_pred CCEEEEeCCHHHHHh
Confidence 999999999999986
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-39 Score=363.53 Aligned_cols=213 Identities=24% Similarity=0.438 Sum_probs=177.4
Q ss_pred EEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHHHhccEE
Q 000406 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIG 752 (1560)
Q Consensus 673 i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~ 752 (1560)
|+++|++++|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+ ..++++++
T Consensus 1 i~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (220)
T cd03265 1 IEVENLVKKYGD---FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREP-REVRRRIG 76 (220)
T ss_pred CEEEEEEEEECC---EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcCh-HHHhhcEE
Confidence 578999999963 45999999999999999999999999999999999999999999999999886533 45677899
Q ss_pred EEecCCcCccc-cHHHHHhcCCCC--CCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHHhccC
Q 000406 753 MVGQEPILFAT-SILENVLMGKEN--ATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKD 829 (1560)
Q Consensus 753 ~v~Q~~~lf~~-Tv~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARAl~~~ 829 (1560)
|++|++.+++. |++||+.++... ...++..+ .+.+.++.+ |++........+||||||||++||||++.+
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qr~~la~al~~~ 149 (220)
T cd03265 77 IVFQDLSVDDELTGWENLYIHARLYGVPGAERRE-----RIDELLDFV--GLLEAADRLVKTYSGGMRRRLEIARSLVHR 149 (220)
T ss_pred EecCCccccccCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCHHHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999998875 999999874211 11111111 122334443 444445566679999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhH
Q 000406 830 PRILLLDEPTSALDSESESIVQQAIDKIS-V-GRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQL 896 (1560)
Q Consensus 830 p~illLDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l 896 (1560)
|++|||||||++||+.+.+.+.+.|+++. + ++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 150 PEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred CCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 99999999999999999999999998874 3 7899999999999876 999999999999999887664
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-39 Score=384.64 Aligned_cols=217 Identities=31% Similarity=0.509 Sum_probs=185.1
Q ss_pred ccEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHHHhcc
Q 000406 671 GKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQ 750 (1560)
Q Consensus 671 g~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~ 750 (1560)
..|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.+.+. .++.
T Consensus 18 ~~l~l~~v~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 92 (377)
T PRK11607 18 PLLEIRNLTKSFDG---QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRP 92 (377)
T ss_pred ceEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCC
Confidence 35999999999963 458999999999999999999999999999999999999999999999999987654 4578
Q ss_pred EEEEecCCcCccc-cHHHHHhcCCCC--CCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHHhc
Q 000406 751 IGMVGQEPILFAT-SILENVLMGKEN--ATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMI 827 (1560)
Q Consensus 751 i~~v~Q~~~lf~~-Tv~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARAl~ 827 (1560)
||||+|++.+|+. ||.|||.++... ....+..+ .+.+.++.+ |+.......+.+|||||||||+|||||+
T Consensus 93 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~-----~v~~~l~~l--~L~~~~~~~~~~LSgGq~QRVaLARAL~ 165 (377)
T PRK11607 93 INMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIAS-----RVNEMLGLV--HMQEFAKRKPHQLSGGQRQRVALARSLA 165 (377)
T ss_pred EEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHh
Confidence 9999999999986 999999987431 12222211 122334443 5555667778899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhHhhh
Q 000406 828 KDPRILLLDEPTSALDSESESIVQQAIDKIS--VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLER 899 (1560)
Q Consensus 828 ~~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l~~~ 899 (1560)
.+|++||||||||+||+.++..+.+.|+++. .|.|+|+|||+++++.. ||+|++|++|++++.|+++++..+
T Consensus 166 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~ 240 (377)
T PRK11607 166 KRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEH 240 (377)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhC
Confidence 9999999999999999999999998887763 48999999999999765 999999999999999999998764
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-38 Score=365.77 Aligned_cols=236 Identities=28% Similarity=0.452 Sum_probs=197.7
Q ss_pred HHHHHHccCCCCCCCCCCCCcCCCCcccEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcC
Q 000406 645 RVFEIIDRVPEIDPYNSEGRKLSSVSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERF 724 (1560)
Q Consensus 645 Ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~ 724 (1560)
.+.+.+..+++++ ...+.+.....|+++|+++.. +++|+|+||+|++||+++|+|+||||||||+++|+|+
T Consensus 16 ~~~~~~~~~~~~~----~~~~~~~~~~~l~i~nls~~~-----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl 86 (282)
T cd03291 16 GFGELLEKAKQEN----NDRKHSSDDNNLFFSNLCLVG-----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGE 86 (282)
T ss_pred HHHHHHhcccccc----cccccCCCCCeEEEEEEEEec-----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4555555443321 222333445679999999952 3589999999999999999999999999999999999
Q ss_pred CCCCccEEEECCeecCCccHHHHhccEEEEecCCcCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHHHHHhCCCCCCcc
Q 000406 725 YDPTKGLITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQ 804 (1560)
Q Consensus 725 ~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Tv~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~ 804 (1560)
++|++|+|.++| +|+|++|++.+++.|++||+.++... ...++.+.++..++.+.+..+|.++++.
T Consensus 87 ~~p~~G~I~i~g-------------~i~yv~q~~~l~~~tv~enl~~~~~~-~~~~~~~~l~~~~l~~~l~~~~~~~~~~ 152 (282)
T cd03291 87 LEPSEGKIKHSG-------------RISFSSQFSWIMPGTIKENIIFGVSY-DEYRYKSVVKACQLEEDITKFPEKDNTV 152 (282)
T ss_pred CCCCCcEEEECC-------------EEEEEeCcccccccCHHHHhhccccc-CHHHHHHHHHHhCCHHHHHhccccccce
Confidence 999999999998 49999999999999999999986432 2234445566667788888999998888
Q ss_pred cCCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHH-HHHhcCCcEEEEEecCccccccCCEEEEEe
Q 000406 805 VGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQA-IDKISVGRTTIVIAHRLATVKNANTIVVLD 883 (1560)
Q Consensus 805 ~~~~g~~LSgGQrQRialARAl~~~p~illLDEpts~LD~~~~~~i~~~-l~~~~~~~tvi~itH~l~~i~~~D~i~vl~ 883 (1560)
+++.+.+||||||||++|||||+.+|+||||||||++||+.+...+.+. ++.+.++.|+|+|||+++.+..||+|++|+
T Consensus 153 ~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~ 232 (282)
T cd03291 153 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILH 232 (282)
T ss_pred ecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEE
Confidence 9888999999999999999999999999999999999999999988875 455556899999999999988899999999
Q ss_pred CCeEEEecChhhHhhhcchH
Q 000406 884 QGSVVEIGNHRQLLERGGAY 903 (1560)
Q Consensus 884 ~G~iv~~G~~~~l~~~~~~~ 903 (1560)
+|++++.|+++++......|
T Consensus 233 ~G~i~~~g~~~~~~~~~~~~ 252 (282)
T cd03291 233 EGSSYFYGTFSELQSLRPDF 252 (282)
T ss_pred CCEEEEECCHHHHHhcchHH
Confidence 99999999999987543333
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-39 Score=346.97 Aligned_cols=172 Identities=40% Similarity=0.677 Sum_probs=162.2
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhhceE
Q 000406 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTA 1393 (1560)
Q Consensus 1314 I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~~I~ 1393 (1560)
|+++|++++|+.. ..++|+++||+|++||.++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|++++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (173)
T cd03246 1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVG 79 (173)
T ss_pred CEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheE
Confidence 5789999999743 245999999999999999999999999999999999999999999999999999999888999999
Q ss_pred EEcCCCCCCCccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 000406 1394 LVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRV 1473 (1560)
Q Consensus 1394 ~VpQdp~LF~gTIreNL~~g~~~~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLARALLr~p~I 1473 (1560)
|++|++.+|++|++||+ ||||||||++|||||+++|++
T Consensus 80 ~~~q~~~~~~~tv~~~l------------------------------------------LS~G~~qrv~la~al~~~p~~ 117 (173)
T cd03246 80 YLPQDDELFSGSIAENI------------------------------------------LSGGQRQRLGLARALYGNPRI 117 (173)
T ss_pred EECCCCccccCcHHHHC------------------------------------------cCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999998 999999999999999999999
Q ss_pred EEEeCCCcCCCHHHHHHHHHHHHHhc-CCceEEEEecChHHHhhcCEEEEEeCCEE
Q 000406 1474 LLLDEASSALDLESEKHVQDALRKVS-KRATTIVVAHRLSTIREANMIAVVRDGAV 1528 (1560)
Q Consensus 1474 LILDEaTSaLD~~Te~~I~~~L~~~~-~~~TvI~IAHRlsti~~aDrIlVLd~G~I 1528 (1560)
|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+..||+|++|++|++
T Consensus 118 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 118 LVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 99999999999999999999999864 47899999999999988999999999975
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=360.52 Aligned_cols=212 Identities=33% Similarity=0.511 Sum_probs=173.6
Q ss_pred EEEEEEEEEcCCCC-CccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCH---HHHh
Q 000406 1314 IELKMVTFTYPSRP-EVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINV---KWLR 1389 (1560)
Q Consensus 1314 I~~~nVsf~Y~~~~-~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l---~~LR 1389 (1560)
|+++||+++|+... ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 78999999996421 1259999999999999999999999999999999999999999999999999988774 5778
Q ss_pred hceEEEcCCC--CCC-CccHHHHHhcCC----CCCCHHHHHHHHHHHhHHHHHHhCCCCcc-ccccCCCCCCChHHHHHH
Q 000406 1390 KQTALVGQEP--ALF-AGTIRDNIALGN----PKASWAEIEEAAEEAYIHKFISSLPQGYE-TQVGESGVQLSGGQKQRI 1461 (1560)
Q Consensus 1390 ~~I~~VpQdp--~LF-~gTIreNL~~g~----~~~sd~eI~~al~~a~l~~~I~~Lp~Gld-t~Vge~G~~LSGGQrQRL 1461 (1560)
++++|+||++ .++ ..|+++|+.++. +...+++...+. .+.+..+ |++ ........+||||||||+
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv 154 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAV-----LLLLVGV--GLPEEVLNRYPHELSGGQRQRV 154 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHH-----HHHHHHC--CCChhHhhCCchhcCHHHHHHH
Confidence 8999999999 344 579999997531 111111111111 1223332 332 334555678999999999
Q ss_pred HHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CceEEEEecChHHHhh-cCEEEEEeCCEEEEec
Q 000406 1462 AIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSK--RATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYG 1532 (1560)
Q Consensus 1462 aLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~--~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~G 1532 (1560)
+|||||+.+|+||||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 155 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 155 AIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 999999999999999999999999999999999998754 7899999999999874 9999999999998865
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=355.22 Aligned_cols=200 Identities=35% Similarity=0.545 Sum_probs=178.7
Q ss_pred EEEEEEEEEcCCCCC--ccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHHHhcc
Q 000406 673 IEFKGVTFAYPSRPE--TVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQ 750 (1560)
Q Consensus 673 i~~~~vs~~y~~~~~--~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~ 750 (1560)
|+++||+++|+.... +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 578999999974311 3699999999999999999999999999999999999999999999998 5
Q ss_pred EEEEecCCcCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHHhccCC
Q 000406 751 IGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDP 830 (1560)
Q Consensus 751 i~~v~Q~~~lf~~Tv~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARAl~~~p 830 (1560)
|+|++|+|.+|+.|++||+.++... ..++..++++..++.+++..+|.|+++.+++.+.+||||||||++|||||+.+|
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p 146 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKPF-DEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDA 146 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCCc-CHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999987532 344556667777888899999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHH-HHHHh-cCCcEEEEEecCccccccCCEEEEEeCCe
Q 000406 831 RILLLDEPTSALDSESESIVQQ-AIDKI-SVGRTTIVIAHRLATVKNANTIVVLDQGS 886 (1560)
Q Consensus 831 ~illLDEpts~LD~~~~~~i~~-~l~~~-~~~~tvi~itH~l~~i~~~D~i~vl~~G~ 886 (1560)
+++||||||++||+++.+.+.+ .+++. .+++|+|++||+++.+..||++++|++|+
T Consensus 147 ~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 147 DIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 9999999999999999888877 56655 34799999999999988899999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-39 Score=383.15 Aligned_cols=218 Identities=27% Similarity=0.423 Sum_probs=185.0
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCC----CHHHHh
Q 000406 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREI----NVKWLR 1389 (1560)
Q Consensus 1314 I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i----~l~~LR 1389 (1560)
|++ ||+++|.. . .+ |+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... +....|
T Consensus 2 l~~-~l~k~~~~---~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 75 (352)
T PRK11144 2 LEL-NFKQQLGD---L-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK 75 (352)
T ss_pred eEE-EEEEEeCC---E-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhh
Confidence 567 99999953 2 23 99999999999999999999999999999999999999999999998653 244568
Q ss_pred hceEEEcCCCCCCC-ccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHc
Q 000406 1390 KQTALVGQEPALFA-GTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAIL 1468 (1560)
Q Consensus 1390 ~~I~~VpQdp~LF~-gTIreNL~~g~~~~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLARALL 1468 (1560)
++++||||++.+|+ .|++|||.++......+++.++++..++.++... ...+||||||||++|||||+
T Consensus 76 ~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGq~qRvalaraL~ 144 (352)
T PRK11144 76 RRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDR-----------YPGSLSGGEKQRVAIGRALL 144 (352)
T ss_pred CCEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhC-----------CcccCCHHHHHHHHHHHHHH
Confidence 89999999999996 5999999986444445566777777666544433 33579999999999999999
Q ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHHHhhccChH
Q 000406 1469 KGSRVLLLDEASSALDLESEKHVQDALRKVSK--RATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLASHLNGV 1545 (1560)
Q Consensus 1469 r~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~--~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eLl~~~~~g~ 1545 (1560)
++|++|||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|++++++.+.....
T Consensus 145 ~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p~~~~ 224 (352)
T PRK11144 145 TAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASSAMRP 224 (352)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCcchhh
Confidence 99999999999999999999999999998754 6899999999998866 99999999999999999999997433333
Q ss_pred HHH
Q 000406 1546 YAS 1548 (1560)
Q Consensus 1546 y~~ 1548 (1560)
++.
T Consensus 225 ~~~ 227 (352)
T PRK11144 225 WLP 227 (352)
T ss_pred hhc
Confidence 343
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=369.72 Aligned_cols=218 Identities=30% Similarity=0.487 Sum_probs=182.8
Q ss_pred ccEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCC-----CCccEEEECCeecCC--cc
Q 000406 671 GKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYD-----PTKGLITLDGHDLKS--LQ 743 (1560)
Q Consensus 671 g~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~-----~~~G~I~i~g~~i~~--~~ 743 (1560)
..|+++||+++|+. ..+|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .+
T Consensus 12 ~~l~i~nl~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 12 IIISLQNVTISYGT---FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred ceEEEEeEEEEECC---EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 46999999999963 458999999999999999999999999999999999987 689999999999853 45
Q ss_pred HHHHhccEEEEecCCcCccccHHHHHhcCCCCC--C---HHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHH
Q 000406 744 VKWLRTQIGMVGQEPILFATSILENVLMGKENA--T---MKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQ 818 (1560)
Q Consensus 744 ~~~lr~~i~~v~Q~~~lf~~Tv~eNi~~g~~~~--~---~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQ 818 (1560)
...+|++|+||+|++.+|..|++||+.++.... . .+++.++++..++. .++.......+.+|||||||
T Consensus 89 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~l~~~~~~~~~~LS~G~~q 161 (269)
T PRK14259 89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVW-------DECKDKLNESGYSLSGGQQQ 161 (269)
T ss_pred HHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCc-------chhhhhhCCCcccCCHHHHH
Confidence 567788899999999999889999998764311 1 11122222222221 12334456677899999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCcccccc-CCEEEEEeC-----------Ce
Q 000406 819 RIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKN-ANTIVVLDQ-----------GS 886 (1560)
Q Consensus 819 RialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~D~i~vl~~-----------G~ 886 (1560)
|++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++ |+
T Consensus 162 rl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~ 241 (269)
T PRK14259 162 RLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGY 241 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccce
Confidence 999999999999999999999999999999999999988768999999999999865 999999996 67
Q ss_pred EEEecChhhHhh
Q 000406 887 VVEIGNHRQLLE 898 (1560)
Q Consensus 887 iv~~G~~~~l~~ 898 (1560)
+++.|+++++..
T Consensus 242 ~~~~~~~~~~~~ 253 (269)
T PRK14259 242 LVEFNETKKIFN 253 (269)
T ss_pred EEEeCCHHHHHh
Confidence 899999988865
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=375.50 Aligned_cols=215 Identities=22% Similarity=0.420 Sum_probs=182.9
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhhceE
Q 000406 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTA 1393 (1560)
Q Consensus 1314 I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~~I~ 1393 (1560)
++++||+++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....+|+.++
T Consensus 3 l~~~~l~~~~~~---~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig 78 (301)
T TIGR03522 3 IRVSSLTKLYGT---QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIG 78 (301)
T ss_pred EEEEEEEEEECC---EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceE
Confidence 789999999953 469999999999999999999999999999999999999999999999999977 4467889999
Q ss_pred EEcCCCCCCCc-cHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHccC
Q 000406 1394 LVGQEPALFAG-TIRDNIALGNP--KASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKG 1470 (1560)
Q Consensus 1394 ~VpQdp~LF~g-TIreNL~~g~~--~~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLARALLr~ 1470 (1560)
|+||++.+|.+ |++|||.+... ..+.++..+. +++.+..+ |++.........||||||||++|||||+.+
T Consensus 79 ~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la~al~~~ 151 (301)
T TIGR03522 79 YLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQR-----VEEMIELV--GLRPEQHKKIGQLSKGYRQRVGLAQALIHD 151 (301)
T ss_pred EecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHC--CCchHhcCchhhCCHHHHHHHHHHHHHhcC
Confidence 99999999976 99999975321 1122221111 12223332 344444455568999999999999999999
Q ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHHHh
Q 000406 1471 SRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLA 1539 (1560)
Q Consensus 1471 p~ILILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eLl~ 1539 (1560)
|++|||||||++||+.+.+.+++.|++..+++|+|++||+++.+.. ||||++|++|++++.|+++++.+
T Consensus 152 p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 152 PKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 9999999999999999999999999998778999999999999876 99999999999999999999876
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=361.08 Aligned_cols=208 Identities=35% Similarity=0.527 Sum_probs=182.0
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhhceE
Q 000406 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTA 1393 (1560)
Q Consensus 1314 I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~~I~ 1393 (1560)
|+++||+++|+. . ..||||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+. .++.++
T Consensus 2 l~~~~l~~~~~~---~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 74 (232)
T PRK10771 2 LKLTDITWLYHH---L--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP--SRRPVS 74 (232)
T ss_pred eEEEEEEEEECC---c--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh--hhccEE
Confidence 789999999963 2 249999999999999999999999999999999999999999999999887654 357899
Q ss_pred EEcCCCCCCCc-cHHHHHhcCC-CC-----CCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 000406 1394 LVGQEPALFAG-TIRDNIALGN-PK-----ASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARA 1466 (1560)
Q Consensus 1394 ~VpQdp~LF~g-TIreNL~~g~-~~-----~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLARA 1466 (1560)
|+||++.+|.+ |++||+.++. +. ..++++.++++..++.+++...| ..||||||||++||||
T Consensus 75 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~lara 143 (232)
T PRK10771 75 MLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP-----------GQLSGGQRQRVALARC 143 (232)
T ss_pred EEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCc-----------ccCCHHHHHHHHHHHH
Confidence 99999999985 9999998642 11 12345777788877776665544 3699999999999999
Q ss_pred HccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHHHh
Q 000406 1467 ILKGSRVLLLDEASSALDLESEKHVQDALRKVSK--RATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLA 1539 (1560)
Q Consensus 1467 LLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~--~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eLl~ 1539 (1560)
++++|++|||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 144 l~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~ 219 (232)
T PRK10771 144 LVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLS 219 (232)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999998753 7899999999999866 99999999999999999999986
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-39 Score=367.39 Aligned_cols=219 Identities=31% Similarity=0.484 Sum_probs=181.9
Q ss_pred cEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCC-----CccEEEECCeecCCccHHH
Q 000406 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDP-----TKGLITLDGHDLKSLQVKW 746 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~-----~~G~I~i~g~~i~~~~~~~ 746 (1560)
.|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++...+...
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 79 (250)
T PRK14247 3 KIEIRDLKVSFGQ---VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE 79 (250)
T ss_pred eEEEEeeEEEECC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHH
Confidence 4899999999963 3589999999999999999999999999999999999974 7999999999998777777
Q ss_pred HhccEEEEecCCcCcc-ccHHHHHhcCCCC----CCHHHHHHHHHHhhhHHHHHhCCC--CCCcccCCCCCCCChHHHHH
Q 000406 747 LRTQIGMVGQEPILFA-TSILENVLMGKEN----ATMKEAVAACKAASAHSFISELPL--GYDTQVGDRGTQLSGGQKQR 819 (1560)
Q Consensus 747 lr~~i~~v~Q~~~lf~-~Tv~eNi~~g~~~----~~~~~~~~~~~~~~~~~~i~~l~~--gl~t~~~~~g~~LSgGQrQR 819 (1560)
+|+.|+|++|++.++. .|++||+.++... ...++.. ..+.+.++.+.. .+....+..+.+||||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qr 154 (250)
T PRK14247 80 LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQ-----ERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQR 154 (250)
T ss_pred HhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHH-----HHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHH
Confidence 8889999999997664 6999999875321 0111111 111223333311 11233456678999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhHhh
Q 000406 820 IALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLE 898 (1560)
Q Consensus 820 ialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l~~ 898 (1560)
++|||||+++|+||||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 155 v~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 234 (250)
T PRK14247 155 LCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVFT 234 (250)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHHHc
Confidence 99999999999999999999999999999999999988668999999999999865 99999999999999999988764
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=361.72 Aligned_cols=209 Identities=31% Similarity=0.514 Sum_probs=181.4
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhhceE
Q 000406 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTA 1393 (1560)
Q Consensus 1314 I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~~I~ 1393 (1560)
|+++|++++|+. .+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+. .++.++
T Consensus 1 l~~~~l~~~~~~----~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~ 74 (235)
T cd03299 1 LKVENLSKDWKE----FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDIS 74 (235)
T ss_pred CeeEeEEEEeCC----ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEE
Confidence 578999999963 27999999999999999999999999999999999999999999999999987654 368899
Q ss_pred EEcCCCCCCC-ccHHHHHhcCCCC--CC----HHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 000406 1394 LVGQEPALFA-GTIRDNIALGNPK--AS----WAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARA 1466 (1560)
Q Consensus 1394 ~VpQdp~LF~-gTIreNL~~g~~~--~s----d~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLARA 1466 (1560)
|+||++.+|. .|++||+.++... .+ ++++.++++..++.+++... ...||||||||++||||
T Consensus 75 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrl~lara 143 (235)
T cd03299 75 YVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRK-----------PETLSGGEQQRVAIARA 143 (235)
T ss_pred EEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcC-----------cccCCHHHHHHHHHHHH
Confidence 9999999885 7999999864211 11 23455666666665554433 34799999999999999
Q ss_pred HccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHHHh
Q 000406 1467 ILKGSRVLLLDEASSALDLESEKHVQDALRKVSK--RATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLA 1539 (1560)
Q Consensus 1467 LLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~--~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eLl~ 1539 (1560)
++++|++|||||||++||+.+.+.+.+.|++... ++|+|++||+++.+.. ||+|++|++|++++.|+++++++
T Consensus 144 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 219 (235)
T cd03299 144 LVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFK 219 (235)
T ss_pred HHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHh
Confidence 9999999999999999999999999999998653 7899999999999876 99999999999999999999986
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-39 Score=358.80 Aligned_cols=205 Identities=25% Similarity=0.434 Sum_probs=170.1
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhhceE
Q 000406 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTA 1393 (1560)
Q Consensus 1314 I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~~I~ 1393 (1560)
++++|+++.|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.. ..|+.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~ 73 (210)
T cd03269 1 LEVENVTKRFGR---VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIG 73 (210)
T ss_pred CEEEEEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEE
Confidence 578999999963 359999999999999999999999999999999999999999999999998753 5678999
Q ss_pred EEcCCCCCCCc-cHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHccC
Q 000406 1394 LVGQEPALFAG-TIRDNIALGNP--KASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKG 1470 (1560)
Q Consensus 1394 ~VpQdp~LF~g-TIreNL~~g~~--~~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLARALLr~ 1470 (1560)
|+||++.+|.+ |++||+.++.. ..+..+.. ..+.+++..+ |++........+||||||||++|||||+.+
T Consensus 74 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 146 (210)
T cd03269 74 YLPEERGLYPKMKVIDQLVYLAQLKGLKKEEAR-----RRIDEWLERL--ELSEYANKRVEELSKGNQQKVQFIAAVIHD 146 (210)
T ss_pred EeccCCcCCcCCcHHHHHHHHHHHcCCChHHHH-----HHHHHHHHHc--CChHHHhCcHhhCCHHHHHHHHHHHHHhcC
Confidence 99999999875 99999976421 11111111 1122333333 333334445568999999999999999999
Q ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCceEEEEecChHHHhh-cCEEEEEeCCEEEEec
Q 000406 1471 SRVLLLDEASSALDLESEKHVQDALRKVS-KRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYG 1532 (1560)
Q Consensus 1471 p~ILILDEaTSaLD~~Te~~I~~~L~~~~-~~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~G 1532 (1560)
|++|||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 147 p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 147 PELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999999999864 46899999999999866 9999999999998865
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=377.92 Aligned_cols=230 Identities=20% Similarity=0.321 Sum_probs=186.1
Q ss_pred cEEEEEEEEEcCCCC-CccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccC----CCccEEEECCEecCCCCHHH
Q 000406 1313 GIELKMVTFTYPSRP-EVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYD----PNQGKVMIEGVDLREINVKW 1387 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~~-~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~----p~~G~I~IdGvdi~~i~l~~ 1387 (1560)
-|+++||+++|+.+. ...+|+||||+|++||++||+|+||||||||+++|+|+.+ |++|+|.+||+++..++...
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 379999999996421 2469999999999999999999999999999999999986 58999999999999888766
Q ss_pred Hh----hceEEEcCCCC--CC-CccHHHHHhcCC------C----C--CCHHHHHHHHHHHhHHHHHHhCCCCccccccC
Q 000406 1388 LR----KQTALVGQEPA--LF-AGTIRDNIALGN------P----K--ASWAEIEEAAEEAYIHKFISSLPQGYETQVGE 1448 (1560)
Q Consensus 1388 LR----~~I~~VpQdp~--LF-~gTIreNL~~g~------~----~--~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge 1448 (1560)
++ +.|+||||+|. ++ ..||.+|+.... . . ...+++.++++.+++.+.- .....
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~--------~~~~~ 154 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHK--------DAMRS 154 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChH--------HHHhC
Confidence 53 47999999996 33 358999986310 0 0 0123455666666654211 11223
Q ss_pred CCCCCChHHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CceEEEEecChHHHhh-cCEEEEEeC
Q 000406 1449 SGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSK--RATTIVVAHRLSTIRE-ANMIAVVRD 1525 (1560)
Q Consensus 1449 ~G~~LSGGQrQRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~--~~TvI~IAHRlsti~~-aDrIlVLd~ 1525 (1560)
....||||||||++|||||+.+|+||||||||++||+.+...|.+.|+++.+ +.|+|+|||+++.+.. ||||+||++
T Consensus 155 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~ 234 (330)
T PRK15093 155 FPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYC 234 (330)
T ss_pred CchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 3457999999999999999999999999999999999999999999998754 6899999999999976 999999999
Q ss_pred CEEEEecCHHHHHhhccChHHHH-HHH
Q 000406 1526 GAVVEYGSHETLLASHLNGVYAS-LVR 1551 (1560)
Q Consensus 1526 G~IvE~Gt~~eLl~~~~~g~y~~-l~~ 1551 (1560)
|+|+|.|++++++++ ....|.+ +..
T Consensus 235 G~ive~g~~~~i~~~-p~~~y~~~ll~ 260 (330)
T PRK15093 235 GQTVETAPSKELVTT-PHHPYTQALIR 260 (330)
T ss_pred CEEEEECCHHHHHhC-CCCHHHHHHHH
Confidence 999999999999873 3445654 444
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-39 Score=358.34 Aligned_cols=199 Identities=31% Similarity=0.524 Sum_probs=168.1
Q ss_pred EEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHHHhccEEE
Q 000406 674 EFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIGM 753 (1560)
Q Consensus 674 ~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~ 753 (1560)
+++|++++|++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ...+++|+|
T Consensus 1 ~~~~l~~~~~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~ 75 (205)
T cd03226 1 RIENISFSYKKG--TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGY 75 (205)
T ss_pred CcccEEEEeCCc--CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEE
Confidence 368999999641 458999999999999999999999999999999999999999999999998754 345678999
Q ss_pred EecCC--cCccccHHHHHhcCCCCCC--HHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHHhccC
Q 000406 754 VGQEP--ILFATSILENVLMGKENAT--MKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKD 829 (1560)
Q Consensus 754 v~Q~~--~lf~~Tv~eNi~~g~~~~~--~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARAl~~~ 829 (1560)
++|++ .++..|++||+.++..... .+++.+ .++.+ |+.........+||||||||++|||||+.+
T Consensus 76 ~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~---------~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~~~ 144 (205)
T cd03226 76 VMQDVDYQLFTDSVREELLLGLKELDAGNEQAET---------VLKDL--DLYALKERHPLSLSGGQKQRLAIAAALLSG 144 (205)
T ss_pred EecChhhhhhhccHHHHHhhhhhhcCccHHHHHH---------HHHHc--CCchhcCCCchhCCHHHHHHHHHHHHHHhC
Confidence 99998 4667899999988643221 122222 33333 444445566679999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEecCcccccc-CCEEEEEeCCeEE
Q 000406 830 PRILLLDEPTSALDSESESIVQQAIDKI-SVGRTTIVIAHRLATVKN-ANTIVVLDQGSVV 888 (1560)
Q Consensus 830 p~illLDEpts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv 888 (1560)
|++|||||||++||+.+.+.+.+.|+++ .+|+|+|++||+++.+.. ||+|++|++|+++
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 145 KDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999999999999999887 458999999999999875 9999999999975
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=372.26 Aligned_cols=220 Identities=29% Similarity=0.531 Sum_probs=183.5
Q ss_pred cEEEEEEEEEcCCCC--CccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCc----cHH
Q 000406 672 KIEFKGVTFAYPSRP--ETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSL----QVK 745 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~~--~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~----~~~ 745 (1560)
.|+++|++++|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... +..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 478999999997321 14599999999999999999999999999999999999999999999999998643 245
Q ss_pred HHhccEEEEecCC--cCccccHHHHHhcCCC--CCCHHHHHHHHHHhhhHHHHHhCCCCCC-cccCCCCCCCChHHHHHH
Q 000406 746 WLRTQIGMVGQEP--ILFATSILENVLMGKE--NATMKEAVAACKAASAHSFISELPLGYD-TQVGDRGTQLSGGQKQRI 820 (1560)
Q Consensus 746 ~lr~~i~~v~Q~~--~lf~~Tv~eNi~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~gl~-t~~~~~g~~LSgGQrQRi 820 (1560)
..++.|+|++|+| .+|..|++|||.++.. ....++..+ .+.++++.+ |++ ........+||||||||+
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrl 154 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKE-----KALKWLKKV--GLSEDLISKSPFELSGGQMRRV 154 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCChhHhhCCcccCCHHHHHHH
Confidence 5677899999998 5777899999987532 112222211 122344444 564 345677789999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhHhh
Q 000406 821 ALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKIS-VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLE 898 (1560)
Q Consensus 821 alARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l~~ 898 (1560)
+|||||+.+|++|||||||++||+.+...+.+.|+++. +|.|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 155 ~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13641 155 AIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFS 234 (287)
T ss_pred HHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999999874 58999999999999865 99999999999999999988764
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-39 Score=370.78 Aligned_cols=221 Identities=29% Similarity=0.448 Sum_probs=182.7
Q ss_pred cEEEEEEEEEcCCC------CCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHH
Q 000406 672 KIEFKGVTFAYPSR------PETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVK 745 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~ 745 (1560)
.|+++||++.|+.. .+..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+..
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 37899999999631 135699999999999999999999999999999999999999999999999999876543
Q ss_pred ---HHhccEEEEecCCc--Ccc-ccHHHHHhcCCCC---CCHHHHHHHHHHhhhHHHHHhCCCCCC-cccCCCCCCCChH
Q 000406 746 ---WLRTQIGMVGQEPI--LFA-TSILENVLMGKEN---ATMKEAVAACKAASAHSFISELPLGYD-TQVGDRGTQLSGG 815 (1560)
Q Consensus 746 ---~lr~~i~~v~Q~~~--lf~-~Tv~eNi~~g~~~---~~~~~~~~~~~~~~~~~~i~~l~~gl~-t~~~~~g~~LSgG 815 (1560)
.+|+.|+||+|++. ++. .|++|||.++... ...++. ...+.+.++.+ |++ ...+..+.+||||
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~~l~~~--gl~~~~~~~~~~~LSgG 154 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQ-----KARIAELLDMV--GLRSEDADKLPRQLSGG 154 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHH-----HHHHHHHHHHc--CCChhhhhCChhhCCHH
Confidence 35778999999983 444 5999999754211 111111 11223345544 554 3456777899999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCcccccc-CCEEEEEeCCeEEEecC
Q 000406 816 QKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKIS--VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGN 892 (1560)
Q Consensus 816 QrQRialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~ 892 (1560)
||||++|||||+.+|+||||||||++||+.++..+.+.|+++. .|+|+|+|||+++.+.. ||++++|++|++++.|+
T Consensus 155 e~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~ 234 (265)
T TIGR02769 155 QLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECD 234 (265)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECC
Confidence 9999999999999999999999999999999999999999874 38999999999999975 99999999999999999
Q ss_pred hhhHhhh
Q 000406 893 HRQLLER 899 (1560)
Q Consensus 893 ~~~l~~~ 899 (1560)
++++...
T Consensus 235 ~~~~~~~ 241 (265)
T TIGR02769 235 VAQLLSF 241 (265)
T ss_pred HHHHcCC
Confidence 9998763
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=369.93 Aligned_cols=217 Identities=31% Similarity=0.523 Sum_probs=183.6
Q ss_pred EEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCcc-HHHHhccE
Q 000406 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQ-VKWLRTQI 751 (1560)
Q Consensus 673 i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~-~~~lr~~i 751 (1560)
|+++|++++|+. ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+ ...+++.|
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 2 IRLENVSYSYPD--GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred EEEEEEEEEcCC--CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence 789999999963 245999999999999999999999999999999999999999999999999997764 35677889
Q ss_pred EEEecCCc--CccccHHHHHhcCCCC--CCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHHhc
Q 000406 752 GMVGQEPI--LFATSILENVLMGKEN--ATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMI 827 (1560)
Q Consensus 752 ~~v~Q~~~--lf~~Tv~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARAl~ 827 (1560)
+||+|+|. ++..|++|||.++... .+..+..+. +.+.++.+ |+....+..+..||||||||++|||||+
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~-----~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~laral~ 152 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKR-----VDRALAEI--GLEKYRHRSPKTLSGGQGQCVALAGILT 152 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHC--CCHHHhcCCcccCCHHHHHHHHHHHHHH
Confidence 99999985 5567999999876321 122222111 12233443 5555566777899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCccccccCCEEEEEeCCeEEEecChhhHhh
Q 000406 828 KDPRILLLDEPTSALDSESESIVQQAIDKIS-VGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLE 898 (1560)
Q Consensus 828 ~~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~~D~i~vl~~G~iv~~G~~~~l~~ 898 (1560)
.+|+||||||||++||+.++..+.+.|+++. +|+|+|++||+++.+..||+|++|++|++++.|+++++..
T Consensus 153 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 224 (274)
T PRK13644 153 MEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLS 224 (274)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhc
Confidence 9999999999999999999999999998874 5899999999999997799999999999999999988754
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-39 Score=364.49 Aligned_cols=218 Identities=26% Similarity=0.394 Sum_probs=181.3
Q ss_pred cEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHH-HHhcc
Q 000406 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVK-WLRTQ 750 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~-~lr~~ 750 (1560)
.|+++|++++|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+.. ..++.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 5 MLSFDKVSAHYGK---IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred EEEEEeEEEeeCC---ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence 4899999999963 4599999999999999999999999999999999999999999999999999877654 36778
Q ss_pred EEEEecCCcCccc-cHHHHHhcCCCCCCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHHhccC
Q 000406 751 IGMVGQEPILFAT-SILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKD 829 (1560)
Q Consensus 751 i~~v~Q~~~lf~~-Tv~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARAl~~~ 829 (1560)
++|++|++.+|+. |++||+.++......++..+.+ .+.+..++ ++.......+.+||||||||++|||||+.+
T Consensus 82 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~l~~~~-~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 155 (237)
T PRK11614 82 VAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERI-----KWVYELFP-RLHERRIQRAGTMSGGEQQMLAIGRALMSQ 155 (237)
T ss_pred EEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHH-----HHHHHHHH-HHHHHHhCchhhCCHHHHHHHHHHHHHHhC
Confidence 9999999999985 9999998864222222211111 11222221 122223455678999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhHhh
Q 000406 830 PRILLLDEPTSALDSESESIVQQAIDKIS-VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLE 898 (1560)
Q Consensus 830 p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l~~ 898 (1560)
|+||||||||++||+.+.+.+.+.|+++. +|+|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 156 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 156 PRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred CCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 99999999999999999999999998874 58999999999998765 99999999999999999998864
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=363.52 Aligned_cols=216 Identities=32% Similarity=0.573 Sum_probs=183.7
Q ss_pred EEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCc--cHHHHhcc
Q 000406 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSL--QVKWLRTQ 750 (1560)
Q Consensus 673 i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~--~~~~lr~~ 750 (1560)
|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++... +...++++
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 2 IEFKNVSKHFGP---TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred EEEEeEEEEECC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence 789999999963 4589999999999999999999999999999999999999999999999998764 33566788
Q ss_pred EEEEecCCcCcc-ccHHHHHhcCCC---CCCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHHh
Q 000406 751 IGMVGQEPILFA-TSILENVLMGKE---NATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAM 826 (1560)
Q Consensus 751 i~~v~Q~~~lf~-~Tv~eNi~~g~~---~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARAl 826 (1560)
++|++|++.++. .|++||+.++.. .....+.. ..+.+.++.+ |++...+..+.+||||||||++|||||
T Consensus 79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la~al 151 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAE-----KQARELLAKV--GLAERAHHYPSELSGGQQQRVAIARAL 151 (240)
T ss_pred eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHH-----HHHHHHHHHc--CChHHHhcChhhcCHHHHHHHHHHHHH
Confidence 999999998886 599999987531 11122111 1223445544 666666777889999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhHhh
Q 000406 827 IKDPRILLLDEPTSALDSESESIVQQAIDKIS-VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLE 898 (1560)
Q Consensus 827 ~~~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l~~ 898 (1560)
+.+|++|||||||++||+.+...+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 152 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 225 (240)
T PRK09493 152 AVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIK 225 (240)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhc
Confidence 99999999999999999999999999998874 48999999999999865 99999999999999999888754
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=365.90 Aligned_cols=217 Identities=30% Similarity=0.441 Sum_probs=182.6
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccC--C---CccEEEECCEecCC--CCH
Q 000406 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYD--P---NQGKVMIEGVDLRE--INV 1385 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~--p---~~G~I~IdGvdi~~--i~l 1385 (1560)
-|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|+|+++ | ++|+|.+||.++.. .+.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14255 5 IITSSDVHLFYGK---FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV 81 (252)
T ss_pred eEEEEeEEEEECC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccH
Confidence 4899999999963 359999999999999999999999999999999999975 4 58999999999864 344
Q ss_pred HHHhhceEEEcCCCCCCCccHHHHHhcCC--CCC-C----HHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHH
Q 000406 1386 KWLRKQTALVGQEPALFAGTIRDNIALGN--PKA-S----WAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQK 1458 (1560)
Q Consensus 1386 ~~LR~~I~~VpQdp~LF~gTIreNL~~g~--~~~-s----d~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQr 1458 (1560)
..+|+.++|+||++.+|..|+++|+.++. ... . ++++.++++.+++.+. +.........+||||||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------i~~~~~~~~~~LS~Gq~ 154 (252)
T PRK14255 82 VQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDE-------VKDHLHESALSLSGGQQ 154 (252)
T ss_pred HHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccc-------hhhHHhcCcccCCHHHH
Confidence 56788999999999999999999998642 111 1 1233444444444322 22233445568999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHH
Q 000406 1459 QRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETL 1537 (1560)
Q Consensus 1459 QRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eL 1537 (1560)
||++|||||+++|+||||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|++.++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14255 155 QRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQM 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988767899999999999875 999999999999999999998
Q ss_pred Hh
Q 000406 1538 LA 1539 (1560)
Q Consensus 1538 l~ 1539 (1560)
..
T Consensus 235 ~~ 236 (252)
T PRK14255 235 FL 236 (252)
T ss_pred hc
Confidence 86
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=372.24 Aligned_cols=219 Identities=31% Similarity=0.543 Sum_probs=182.9
Q ss_pred EEEEEEEEEcCCCC--CccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCc----cHHH
Q 000406 673 IEFKGVTFAYPSRP--ETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSL----QVKW 746 (1560)
Q Consensus 673 i~~~~vs~~y~~~~--~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~----~~~~ 746 (1560)
|+++||+++|++.. ..++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++... +...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999997422 13589999999999999999999999999999999999999999999999998753 3456
Q ss_pred HhccEEEEecCC--cCccccHHHHHhcCCCC--CCHHHHHHHHHHhhhHHHHHhCCCCCC-cccCCCCCCCChHHHHHHH
Q 000406 747 LRTQIGMVGQEP--ILFATSILENVLMGKEN--ATMKEAVAACKAASAHSFISELPLGYD-TQVGDRGTQLSGGQKQRIA 821 (1560)
Q Consensus 747 lr~~i~~v~Q~~--~lf~~Tv~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~gl~-t~~~~~g~~LSgGQrQRia 821 (1560)
+|+.|+|++|++ .+|+.|++|||.++... .+.++..+. +.+.++.+ |+. ......+.+||||||||++
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~ 155 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEAL-----AREKLALV--GISESLFEKNPFELSGGQMRRVA 155 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCChhhhhCCcccCCHHHHHHHH
Confidence 778899999998 57888999999875321 122222211 12334443 454 2456677899999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhHhh
Q 000406 822 LARAMIKDPRILLLDEPTSALDSESESIVQQAIDKIS-VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLE 898 (1560)
Q Consensus 822 lARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l~~ 898 (1560)
|||||+.+|++|||||||++||+.+++.+.+.|+++. +++|||+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 156 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 234 (280)
T PRK13649 156 IAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQ 234 (280)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999999998874 48999999999999865 99999999999999999988765
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-39 Score=361.65 Aligned_cols=210 Identities=25% Similarity=0.424 Sum_probs=178.9
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhhce
Q 000406 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQT 1392 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~~I 1392 (1560)
-|+++||++.|+. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+...+|+.+
T Consensus 7 ~i~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (225)
T PRK10247 7 LLQLQNVGYLAGD---AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQV 83 (225)
T ss_pred eEEEeccEEeeCC---ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhcc
Confidence 4999999999963 3599999999999999999999999999999999999999999999999999988888889999
Q ss_pred EEEcCCCCCCCccHHHHHhcCC---CCC-CHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHc
Q 000406 1393 ALVGQEPALFAGTIRDNIALGN---PKA-SWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAIL 1468 (1560)
Q Consensus 1393 ~~VpQdp~LF~gTIreNL~~g~---~~~-sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLARALL 1468 (1560)
+|+||++.+|+.|++||+.++. ... ..+++.++++..++. ++.......+||||||||++|||||+
T Consensus 84 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~~LS~G~~qrv~laral~ 153 (225)
T PRK10247 84 SYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALP----------DTILTKNIAELSGGEKQRISLIRNLQ 153 (225)
T ss_pred EEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCC----------hHHhcCCcccCCHHHHHHHHHHHHHh
Confidence 9999999999999999997631 111 122233333333332 12344556689999999999999999
Q ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CceEEEEecChHHHhhcCEEEEEe-CCEEEEecCHH
Q 000406 1469 KGSRVLLLDEASSALDLESEKHVQDALRKVSK--RATTIVVAHRLSTIREANMIAVVR-DGAVVEYGSHE 1535 (1560)
Q Consensus 1469 r~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~--~~TvI~IAHRlsti~~aDrIlVLd-~G~IvE~Gt~~ 1535 (1560)
++|+||||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+..||+|++|+ ++..+++|+|+
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 154 FMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 99999999999999999999999999998753 789999999999998899999995 66667788885
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=365.46 Aligned_cols=217 Identities=31% Similarity=0.551 Sum_probs=183.0
Q ss_pred cEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCcc--------
Q 000406 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQ-------- 743 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~-------- 743 (1560)
.|+++|++++|++ .++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|+++...+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (250)
T PRK11264 3 AIEVKNLVKKFHG---QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGL 79 (250)
T ss_pred cEEEeceEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhH
Confidence 3899999999963 35899999999999999999999999999999999999999999999999986432
Q ss_pred HHHHhccEEEEecCCcCcc-ccHHHHHhcCCC---CCCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHH
Q 000406 744 VKWLRTQIGMVGQEPILFA-TSILENVLMGKE---NATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQR 819 (1560)
Q Consensus 744 ~~~lr~~i~~v~Q~~~lf~-~Tv~eNi~~g~~---~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQR 819 (1560)
...++++++||+|++.+|+ .|++||+.++.. ....++..+ .+.+.++.+ |++...+..+.+||||||||
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~Gq~qr 152 (250)
T PRK11264 80 IRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATA-----RARELLAKV--GLAGKETSYPRRLSGGQQQR 152 (250)
T ss_pred HHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCcchhhCChhhCChHHHHH
Confidence 2456778999999999886 599999976421 111111111 123344544 55555667788999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhHh
Q 000406 820 IALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKIS-VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLL 897 (1560)
Q Consensus 820 ialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l~ 897 (1560)
++|||||+.+|+||||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 153 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 232 (250)
T PRK11264 153 VAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALF 232 (250)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999998874 48999999999999876 9999999999999999998876
Q ss_pred h
Q 000406 898 E 898 (1560)
Q Consensus 898 ~ 898 (1560)
+
T Consensus 233 ~ 233 (250)
T PRK11264 233 A 233 (250)
T ss_pred c
Confidence 4
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-39 Score=343.47 Aligned_cols=220 Identities=28% Similarity=0.459 Sum_probs=189.6
Q ss_pred cEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHH-HHhcc
Q 000406 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVK-WLRTQ 750 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~-~lr~~ 750 (1560)
.++++|++..|+. ..+|++|||++++||+++|+|+||+|||||+++|+|+.++.+|+|.++|+|++..++. ..|..
T Consensus 3 mL~v~~l~~~YG~---~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~G 79 (237)
T COG0410 3 MLEVENLSAGYGK---IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLG 79 (237)
T ss_pred ceeEEeEeecccc---eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCC
Confidence 4789999999974 5699999999999999999999999999999999999999999999999999999766 46778
Q ss_pred EEEEecCCcCccc-cHHHHHhcCCCCCCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHHhccC
Q 000406 751 IGMVGQEPILFAT-SILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKD 829 (1560)
Q Consensus 751 i~~v~Q~~~lf~~-Tv~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARAl~~~ 829 (1560)
|+||||.-.+|+. ||+||+.+|......++... ...++..+-+| -+....+..+.+|||||||.+||||||..+
T Consensus 80 i~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~----~~~e~v~~lFP-~Lker~~~~aG~LSGGEQQMLAiaRALm~~ 154 (237)
T COG0410 80 IAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQE----RDLEEVYELFP-RLKERRNQRAGTLSGGEQQMLAIARALMSR 154 (237)
T ss_pred eEeCcccccchhhCcHHHHHhhhhhccccccccc----ccHHHHHHHCh-hHHHHhcCcccCCChHHHHHHHHHHHHhcC
Confidence 9999999999986 99999998854322211111 11223344455 255566778889999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhHhhh
Q 000406 830 PRILLLDEPTSALDSESESIVQQAIDKISV--GRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLER 899 (1560)
Q Consensus 830 p~illLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l~~~ 899 (1560)
|++|+|||||.+|-|.-.+.|.+.|+++.+ +.||++|-++...+.. +||.+||++|+|+.+|+.++|...
T Consensus 155 PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~ 227 (237)
T COG0410 155 PKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLAD 227 (237)
T ss_pred CCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcC
Confidence 999999999999999999999999999863 6799999999999865 999999999999999999999865
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-39 Score=360.92 Aligned_cols=209 Identities=29% Similarity=0.535 Sum_probs=174.6
Q ss_pred EEEEEEEEEcCCCC-CccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHH---Hh
Q 000406 673 IEFKGVTFAYPSRP-ETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKW---LR 748 (1560)
Q Consensus 673 i~~~~vs~~y~~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~---lr 748 (1560)
|+++||+++|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... +|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 78999999996421 246999999999999999999999999999999999999999999999999998766543 33
Q ss_pred -ccEEEEecCCcCcc-ccHHHHHhcCCC--CCCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHH
Q 000406 749 -TQIGMVGQEPILFA-TSILENVLMGKE--NATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALAR 824 (1560)
Q Consensus 749 -~~i~~v~Q~~~lf~-~Tv~eNi~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialAR 824 (1560)
++|+||+|++.+|+ .|++||+.++.. .....+..+ .+.++++.+ |++......+.+||||||||++|||
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~lar 154 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKE-----RAYEMLEKV--GLEHRINHRPSELSGGERQRVAIAR 154 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHH
Confidence 67999999999886 499999987421 111111111 122344444 5666667777899999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCccccccCCEEEEEeCCeEE
Q 000406 825 AMIKDPRILLLDEPTSALDSESESIVQQAIDKIS--VGRTTIVIAHRLATVKNANTIVVLDQGSVV 888 (1560)
Q Consensus 825 Al~~~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~~D~i~vl~~G~iv 888 (1560)
||+.+|+||||||||++||+.++..+.+.|+++. .++|+|+|||+++.+..||+|++|++|+++
T Consensus 155 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 155 ALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 9999999999999999999999999999998874 379999999999998889999999999985
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=364.25 Aligned_cols=221 Identities=24% Similarity=0.447 Sum_probs=185.9
Q ss_pred EEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHH-HhccE
Q 000406 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKW-LRTQI 751 (1560)
Q Consensus 673 i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~-lr~~i 751 (1560)
|+++|+++.|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+... .+..+
T Consensus 3 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (242)
T TIGR03411 3 LYLEGLSVSFDG---FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGI 79 (242)
T ss_pred EEEEeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCe
Confidence 789999999963 35899999999999999999999999999999999999999999999999988776553 45679
Q ss_pred EEEecCCcCccc-cHHHHHhcCCCCCC-H-HH---HHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHH
Q 000406 752 GMVGQEPILFAT-SILENVLMGKENAT-M-KE---AVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARA 825 (1560)
Q Consensus 752 ~~v~Q~~~lf~~-Tv~eNi~~g~~~~~-~-~~---~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARA 825 (1560)
+|++|++.+|++ |++||+.++..... . .. .........+.+.++.+ |++........+||||||||++||||
T Consensus 80 ~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~Ge~qrv~lara 157 (242)
T TIGR03411 80 GRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETI--GLADEADRLAGLLSHGQKQWLEIGML 157 (242)
T ss_pred eEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHH
Confidence 999999999986 99999988532100 0 00 00001112234455554 56666677788999999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhHhh
Q 000406 826 MIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLE 898 (1560)
Q Consensus 826 l~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l~~ 898 (1560)
|+.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 158 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 231 (242)
T TIGR03411 158 LMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQA 231 (242)
T ss_pred HhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHhc
Confidence 99999999999999999999999999999988668999999999999976 99999999999999999888753
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=369.36 Aligned_cols=219 Identities=26% Similarity=0.522 Sum_probs=185.0
Q ss_pred cEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHHHhccE
Q 000406 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQI 751 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 751 (1560)
.|+++|++++|++. +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|++|
T Consensus 7 ~l~~~nl~~~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 7 MIKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred EEEEEeEEEEcCCC-CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 58999999999632 34689999999999999999999999999999999999999999999999999877777788899
Q ss_pred EEEecCCc--CccccHHHHHhcCCCC--CCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHHhc
Q 000406 752 GMVGQEPI--LFATSILENVLMGKEN--ATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMI 827 (1560)
Q Consensus 752 ~~v~Q~~~--lf~~Tv~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARAl~ 827 (1560)
+||+|+|. ++..|++|||.++... .+.++... .+.+.++.+ |++...+..+.+||||||||++|||||+
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~laral~ 158 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKD-----IIDDLAKKV--GMEDYLDKEPQNLSGGQKQRVAIASVLA 158 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHH-----HHHHHHHHc--CCHHHhhCCcccCCHHHHHHHHHHHHHH
Confidence 99999983 4456999999875321 12222211 122334443 5555566777899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CcEEEEEecCccccccCCEEEEEeCCeEEEecChhhHhh
Q 000406 828 KDPRILLLDEPTSALDSESESIVQQAIDKIS-V-GRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLE 898 (1560)
Q Consensus 828 ~~p~illLDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~i~~~D~i~vl~~G~iv~~G~~~~l~~ 898 (1560)
.+|++|||||||++||+.+.+.+.+.|+++. + ++|+|++||+++.+..||+|++|++|++++.|+++++.+
T Consensus 159 ~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 231 (271)
T PRK13632 159 LNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILN 231 (271)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhc
Confidence 9999999999999999999999999999874 3 589999999999987899999999999999999888764
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-39 Score=367.99 Aligned_cols=219 Identities=28% Similarity=0.477 Sum_probs=180.8
Q ss_pred cEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCC-----CccEEEECCeecC--CccH
Q 000406 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDP-----TKGLITLDGHDLK--SLQV 744 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~-----~~G~I~i~g~~i~--~~~~ 744 (1560)
.|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|+++. +.+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (253)
T PRK14267 4 AIETVNLRVYYGS---NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDP 80 (253)
T ss_pred eEEEEeEEEEeCC---eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccCh
Confidence 4899999999964 3589999999999999999999999999999999999987 4999999999986 4455
Q ss_pred HHHhccEEEEecCCcCccc-cHHHHHhcCCC--C--CCHHHHHHHHHHhhhHHHHHhCC--CCCCcccCCCCCCCChHHH
Q 000406 745 KWLRTQIGMVGQEPILFAT-SILENVLMGKE--N--ATMKEAVAACKAASAHSFISELP--LGYDTQVGDRGTQLSGGQK 817 (1560)
Q Consensus 745 ~~lr~~i~~v~Q~~~lf~~-Tv~eNi~~g~~--~--~~~~~~~~~~~~~~~~~~i~~l~--~gl~t~~~~~g~~LSgGQr 817 (1560)
..+|++++|++|++.+|+. |+.||+.++.. . ...++..+. +.+.++.+. ..+....+..+.+||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~ 155 (253)
T PRK14267 81 IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDER-----VEWALKKAALWDEVKDRLNDYPSNLSGGQR 155 (253)
T ss_pred HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHH-----HHHHHHHcCCccchhhhhccChhhCCHHHH
Confidence 5677899999999999976 99999987531 1 011111111 111222221 0112334667789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhH
Q 000406 818 QRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQL 896 (1560)
Q Consensus 818 QRialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l 896 (1560)
||++|||||+++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 235 (253)
T PRK14267 156 QRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKV 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988667999999999999865 999999999999999999887
Q ss_pred hh
Q 000406 897 LE 898 (1560)
Q Consensus 897 ~~ 898 (1560)
.+
T Consensus 236 ~~ 237 (253)
T PRK14267 236 FE 237 (253)
T ss_pred Hh
Confidence 64
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=369.60 Aligned_cols=219 Identities=26% Similarity=0.505 Sum_probs=183.9
Q ss_pred cEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHHHhccE
Q 000406 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQI 751 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 751 (1560)
.|+++|++++|+.. ..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++...+...+++++
T Consensus 3 ~l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 80 (277)
T PRK13652 3 LIETRDLCYSYSGS--KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFV 80 (277)
T ss_pred eEEEEEEEEEeCCC--CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 37899999999632 3589999999999999999999999999999999999999999999999999876667778899
Q ss_pred EEEecCC--cCccccHHHHHhcCCC--CCCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHHhc
Q 000406 752 GMVGQEP--ILFATSILENVLMGKE--NATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMI 827 (1560)
Q Consensus 752 ~~v~Q~~--~lf~~Tv~eNi~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARAl~ 827 (1560)
+||+|++ .+++.||.||+.++.. ..+.++..+ ...+.++.+ |+.......+..||||||||++|||||+
T Consensus 81 ~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~Gq~qrl~laraL~ 153 (277)
T PRK13652 81 GLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAH-----RVSSALHML--GLEELRDRVPHHLSGGEKKRVAIAGVIA 153 (277)
T ss_pred EEEecCcccccccccHHHHHHhHHHHcCCCHHHHHH-----HHHHHHHHC--CChhHhcCCcccCCHHHHHHHHHHHHHH
Confidence 9999998 3677899999987532 112221111 112233333 4444456667799999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCccccc-cCCEEEEEeCCeEEEecChhhHhhh
Q 000406 828 KDPRILLLDEPTSALDSESESIVQQAIDKIS--VGRTTIVIAHRLATVK-NANTIVVLDQGSVVEIGNHRQLLER 899 (1560)
Q Consensus 828 ~~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~-~~D~i~vl~~G~iv~~G~~~~l~~~ 899 (1560)
.+|++|||||||++||+.+.+.+.+.++++. .++|+|++||+++.+. .||+|++|++|++++.|+++++++.
T Consensus 154 ~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 228 (277)
T PRK13652 154 MEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228 (277)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcC
Confidence 9999999999999999999999999998874 3899999999999986 4999999999999999999998753
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-39 Score=376.65 Aligned_cols=216 Identities=29% Similarity=0.494 Sum_probs=181.4
Q ss_pred cEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHHHhccE
Q 000406 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQI 751 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 751 (1560)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ....|++|
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i 79 (303)
T TIGR01288 4 AIDLVGVSKSYGD---KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAI 79 (303)
T ss_pred EEEEEeEEEEeCC---eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcE
Confidence 5899999999963 4599999999999999999999999999999999999999999999999998653 34567889
Q ss_pred EEEecCCcCcc-ccHHHHHhcCCC--CCCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHHhcc
Q 000406 752 GMVGQEPILFA-TSILENVLMGKE--NATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIK 828 (1560)
Q Consensus 752 ~~v~Q~~~lf~-~Tv~eNi~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARAl~~ 828 (1560)
+||||++.++. .|++||+.+... .....+..+.+ .+.++.+ |+.........+||||||||++|||||+.
T Consensus 80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~ll~~~--~l~~~~~~~~~~LSgG~~qrv~la~al~~ 152 (303)
T TIGR01288 80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVI-----PSLLEFA--RLESKADVRVALLSGGMKRRLTLARALIN 152 (303)
T ss_pred EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHHC--CChhHhcCchhhCCHHHHHHHHHHHHHhc
Confidence 99999999886 599999975321 11222222211 1223332 44444566677999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhHhh
Q 000406 829 DPRILLLDEPTSALDSESESIVQQAIDKIS-VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLE 898 (1560)
Q Consensus 829 ~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l~~ 898 (1560)
+|++|||||||++||+.+...+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 153 ~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 153 DPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999999873 58999999999999976 99999999999999999998864
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-39 Score=358.27 Aligned_cols=207 Identities=26% Similarity=0.454 Sum_probs=172.8
Q ss_pred EEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHHHhccEE
Q 000406 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIG 752 (1560)
Q Consensus 673 i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~ 752 (1560)
|+++|+++.|++ .++|+|+||+|++| +++|+||||||||||+++|+|+++|++|+|.++|.++...+ ..+++.++
T Consensus 1 i~~~~~~~~~~~---~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 75 (211)
T cd03264 1 LQLENLTKRYGK---KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIG 75 (211)
T ss_pred CEEEEEEEEECC---EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheE
Confidence 578999999963 35999999999999 99999999999999999999999999999999999987766 56788999
Q ss_pred EEecCCcCccc-cHHHHHhcCCC--CCCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHHhccC
Q 000406 753 MVGQEPILFAT-SILENVLMGKE--NATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKD 829 (1560)
Q Consensus 753 ~v~Q~~~lf~~-Tv~eNi~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARAl~~~ 829 (1560)
|++|++.+|.. |++||+.+... ....++..+ .+.+.++.+ |++........+||||||||++|||||+++
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 148 (211)
T cd03264 76 YLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKA-----RVDEVLELV--NLGDRAKKKIGSLSGGMRRRVGIAQALVGD 148 (211)
T ss_pred EecCCCcccccCCHHHHHHHHHHHhCCCHHHHHH-----HHHHHHHHC--CCHHHHhCchhhCCHHHHHHHHHHHHHhcC
Confidence 99999999886 99999986421 111111111 111223332 333334455678999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCcccccc-CCEEEEEeCCeEEEec
Q 000406 830 PRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIG 891 (1560)
Q Consensus 830 p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G 891 (1560)
|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||++++|++|++++.|
T Consensus 149 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 149 PSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999988667999999999999865 9999999999998764
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-39 Score=371.70 Aligned_cols=218 Identities=25% Similarity=0.439 Sum_probs=183.2
Q ss_pred cEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHH---HHh
Q 000406 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVK---WLR 748 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~---~lr 748 (1560)
.|+++||+++|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+.. .++
T Consensus 7 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 83 (269)
T PRK11831 7 LVDMRGVSFTRGN---RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVR 83 (269)
T ss_pred eEEEeCeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHh
Confidence 5899999999963 4589999999999999999999999999999999999999999999999998766543 356
Q ss_pred ccEEEEecCCcCccc-cHHHHHhcCCCC---CCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHH
Q 000406 749 TQIGMVGQEPILFAT-SILENVLMGKEN---ATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALAR 824 (1560)
Q Consensus 749 ~~i~~v~Q~~~lf~~-Tv~eNi~~g~~~---~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialAR 824 (1560)
++|+|++|++.+|+. |+.||+.++... ...++.. ..+.+.++.+ |+.........+||||||||++|||
T Consensus 84 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LSgGq~qrv~lar 156 (269)
T PRK11831 84 KRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLH-----STVMMKLEAV--GLRGAAKLMPSELSGGMARRAALAR 156 (269)
T ss_pred hcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHH-----HHHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHH
Confidence 789999999999986 999999864211 1111111 1112233443 5555556677899999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhHhhh
Q 000406 825 AMIKDPRILLLDEPTSALDSESESIVQQAIDKIS--VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLER 899 (1560)
Q Consensus 825 Al~~~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l~~~ 899 (1560)
||+.+|++|||||||++||+.+.+.+.+.|+++. .|+|+|+|||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 157 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 234 (269)
T PRK11831 157 AIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQAN 234 (269)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999874 37999999999999876 999999999999999999988753
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-39 Score=358.84 Aligned_cols=201 Identities=36% Similarity=0.526 Sum_probs=169.7
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCC--CCHHHHhhc
Q 000406 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLRE--INVKWLRKQ 1391 (1560)
Q Consensus 1314 I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~--i~l~~LR~~ 1391 (1560)
|+++||+++|+. .++|+++||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.. .+...+|+.
T Consensus 1 l~~~~l~~~~~~---~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (213)
T cd03262 1 IEIKNLHKSFGD---FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQK 77 (213)
T ss_pred CEEEEEEEEECC---eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhc
Confidence 578999999964 359999999999999999999999999999999999999999999999999853 345677899
Q ss_pred eEEEcCCCCCCC-ccHHHHHhcCCC---CCCHH----HHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 000406 1392 TALVGQEPALFA-GTIRDNIALGNP---KASWA----EIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAI 1463 (1560)
Q Consensus 1392 I~~VpQdp~LF~-gTIreNL~~g~~---~~sd~----eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaL 1463 (1560)
++|+||++.+|. .|++||+.++.. ..+.+ ++.++++..+ ++..+.....+||||||||++|
T Consensus 78 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS~G~~qrv~l 146 (213)
T cd03262 78 VGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVG-----------LADKADAYPAQLSGGQQQRVAI 146 (213)
T ss_pred ceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcC-----------CHhHhhhCccccCHHHHHHHHH
Confidence 999999999886 699999986421 12222 2333333333 3333444456899999999999
Q ss_pred HHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCceEEEEecChHHHhh-cCEEEEEeCCEE
Q 000406 1464 ARAILKGSRVLLLDEASSALDLESEKHVQDALRKVS-KRATTIVVAHRLSTIRE-ANMIAVVRDGAV 1528 (1560)
Q Consensus 1464 ARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~-~~~TvI~IAHRlsti~~-aDrIlVLd~G~I 1528 (1560)
||||+++|+||||||||++||+.+.+.+.+.|++.. .++|+|++||+++.+.. ||+|++|++|+|
T Consensus 147 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 147 ARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999875 46899999999999976 999999999975
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=377.31 Aligned_cols=216 Identities=26% Similarity=0.439 Sum_probs=181.9
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhhce
Q 000406 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQT 1392 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~~I 1392 (1560)
.|+++||+++|+. ..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...|+.|
T Consensus 41 ~i~i~nl~k~y~~---~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~i 116 (340)
T PRK13536 41 AIDLAGVSKSYGD---KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARI 116 (340)
T ss_pred eEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccE
Confidence 4999999999963 35999999999999999999999999999999999999999999999999997654 5678899
Q ss_pred EEEcCCCCCC-CccHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcc
Q 000406 1393 ALVGQEPALF-AGTIRDNIALGNP--KASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILK 1469 (1560)
Q Consensus 1393 ~~VpQdp~LF-~gTIreNL~~g~~--~~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLARALLr 1469 (1560)
+|+||++.++ ..|++||+.+... ..+..+..+.++. +-+. ..+++..++.++ +||||||||++|||||+.
T Consensus 117 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~--ll~~-~~L~~~~~~~~~----~LS~G~kqrv~lA~aL~~ 189 (340)
T PRK13536 117 GVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPS--LLEF-ARLESKADARVS----DLSGGMKRRLTLARALIN 189 (340)
T ss_pred EEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHH--HHHH-cCCchhhCCChh----hCCHHHHHHHHHHHHHhc
Confidence 9999999886 5699999985321 1222322222211 1111 134444555554 799999999999999999
Q ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHHHh
Q 000406 1470 GSRVLLLDEASSALDLESEKHVQDALRKVS-KRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLA 1539 (1560)
Q Consensus 1470 ~p~ILILDEaTSaLD~~Te~~I~~~L~~~~-~~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eLl~ 1539 (1560)
+|++|||||||++||+.+...+++.|+++. +++|||++||+++.+.. ||+|++|++|+|++.|+++++.+
T Consensus 190 ~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 261 (340)
T PRK13536 190 DPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALID 261 (340)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999999874 47899999999999976 99999999999999999999976
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=366.21 Aligned_cols=218 Identities=29% Similarity=0.481 Sum_probs=183.1
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECC------EecCCCCHH
Q 000406 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEG------VDLREINVK 1386 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdG------vdi~~i~l~ 1386 (1560)
.|+++|++++|+. +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++| .++..++..
T Consensus 10 ~i~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~ 86 (257)
T PRK14246 10 VFNISRLYLYIND---KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAI 86 (257)
T ss_pred heeeeeEEEecCC---ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHH
Confidence 4999999999963 3599999999999999999999999999999999999999986666654 677777777
Q ss_pred HHhhceEEEcCCCCCCCc-cHHHHHhcCCC--CC-CHHH----HHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHH
Q 000406 1387 WLRKQTALVGQEPALFAG-TIRDNIALGNP--KA-SWAE----IEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQK 1458 (1560)
Q Consensus 1387 ~LR~~I~~VpQdp~LF~g-TIreNL~~g~~--~~-sd~e----I~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQr 1458 (1560)
.+|+.++|+||++.+|.+ |+++||.++.. .. ..++ +.++++..++.+++ +......+..||+|||
T Consensus 87 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~LS~G~~ 159 (257)
T PRK14246 87 KLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEV-------YDRLNSPASQLSGGQQ 159 (257)
T ss_pred HHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccc-------hhhhcCCcccCCHHHH
Confidence 889999999999999975 99999986521 11 2223 33444444443222 1123445668999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHHHh-hcCEEEEEeCCEEEEecCHHHH
Q 000406 1459 QRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIR-EANMIAVVRDGAVVEYGSHETL 1537 (1560)
Q Consensus 1459 QRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlsti~-~aDrIlVLd~G~IvE~Gt~~eL 1537 (1560)
||++||||++++|+||||||||++||..+++.+.+.|++..+++|+|+|||+++.+. .||++++|++|++++.|+++++
T Consensus 160 qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~ 239 (257)
T PRK14246 160 QRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEI 239 (257)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999999998877799999999999995 5999999999999999999999
Q ss_pred Hhh
Q 000406 1538 LAS 1540 (1560)
Q Consensus 1538 l~~ 1540 (1560)
.++
T Consensus 240 ~~~ 242 (257)
T PRK14246 240 FTS 242 (257)
T ss_pred HhC
Confidence 873
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=364.96 Aligned_cols=218 Identities=33% Similarity=0.528 Sum_probs=181.2
Q ss_pred ccEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCC-----CccEEEECCeecCC--cc
Q 000406 671 GKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDP-----TKGLITLDGHDLKS--LQ 743 (1560)
Q Consensus 671 g~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~-----~~G~I~i~g~~i~~--~~ 743 (1560)
|.|+++||++.|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|+++.. .+
T Consensus 2 ~~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~ 78 (250)
T PRK14240 2 GKISVKDLDLFYGD---FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78 (250)
T ss_pred CeEEEEEEEEEECC---ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 46899999999973 3589999999999999999999999999999999999763 69999999999864 34
Q ss_pred HHHHhccEEEEecCCcCccccHHHHHhcCCCCC---CHH----HHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHH
Q 000406 744 VKWLRTQIGMVGQEPILFATSILENVLMGKENA---TMK----EAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQ 816 (1560)
Q Consensus 744 ~~~lr~~i~~v~Q~~~lf~~Tv~eNi~~g~~~~---~~~----~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQ 816 (1560)
...+|+.|+||+|++.+|+.|++||+.++.... ..+ ++.++++..++.+ ++....+..+.+|||||
T Consensus 79 ~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS~G~ 151 (250)
T PRK14240 79 VNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWD-------EVKDRLKKSALGLSGGQ 151 (250)
T ss_pred hHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCch-------hhHHHHhcCCCCCCHHH
Confidence 456788999999999999899999998753211 111 1222222222211 22234456678999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhh
Q 000406 817 KQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQ 895 (1560)
Q Consensus 817 rQRialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~ 895 (1560)
|||++|||||+.+|++|||||||++||+.++..+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 152 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 231 (250)
T PRK14240 152 QQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVD 231 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999988668999999999998866 99999999999999999888
Q ss_pred Hhh
Q 000406 896 LLE 898 (1560)
Q Consensus 896 l~~ 898 (1560)
+..
T Consensus 232 ~~~ 234 (250)
T PRK14240 232 LFT 234 (250)
T ss_pred HHh
Confidence 754
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-38 Score=364.46 Aligned_cols=228 Identities=26% Similarity=0.378 Sum_probs=185.3
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCC----CccEEEECCEecCCCCHHHH
Q 000406 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDP----NQGKVMIEGVDLREINVKWL 1388 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p----~~G~I~IdGvdi~~i~l~~L 1388 (1560)
.|+++||+++| + .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||.++... +..
T Consensus 4 ~l~~~~l~~~~-~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~ 77 (254)
T PRK10418 4 QIELRNIALQA-A---QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALR 77 (254)
T ss_pred EEEEeCeEEEe-c---cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--ccc
Confidence 58999999999 2 2599999999999999999999999999999999999999 999999999998632 223
Q ss_pred hhceEEEcCCCC-CCC--ccHHHHHhcC----CCCCCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 000406 1389 RKQTALVGQEPA-LFA--GTIRDNIALG----NPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRI 1461 (1560)
Q Consensus 1389 R~~I~~VpQdp~-LF~--gTIreNL~~g----~~~~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRL 1461 (1560)
++.++||||++. .|. .|+.+|+... .....+++++++++.+++.+. ++.++.....||||||||+
T Consensus 78 ~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~Gq~qrv 149 (254)
T PRK10418 78 GRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENA--------ARVLKLYPFEMSGGMLQRM 149 (254)
T ss_pred cceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCCh--------hhhhhcCCcccCHHHHHHH
Confidence 467999999985 343 5888886431 112233456666666555321 1234455668999999999
Q ss_pred HHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHHH
Q 000406 1462 AIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSK--RATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLL 1538 (1560)
Q Consensus 1462 aLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~--~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eLl 1538 (1560)
+|||||+++|+||||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 150 ~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 150 MIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLF 229 (254)
T ss_pred HHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999998753 6899999999999865 9999999999999999999998
Q ss_pred hhccChHHHHHHHHhh
Q 000406 1539 ASHLNGVYASLVRAET 1554 (1560)
Q Consensus 1539 ~~~~~g~y~~l~~~q~ 1554 (1560)
++.....+..++..+.
T Consensus 230 ~~~~~~~~~~~~~~~~ 245 (254)
T PRK10418 230 NAPKHAVTRSLVSAHL 245 (254)
T ss_pred hCCCCHHHHHHHHhhh
Confidence 7433334555665543
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=367.17 Aligned_cols=219 Identities=28% Similarity=0.481 Sum_probs=181.2
Q ss_pred cEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCC--C---CccEEEECCeecCC--ccH
Q 000406 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYD--P---TKGLITLDGHDLKS--LQV 744 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~--~---~~G~I~i~g~~i~~--~~~ 744 (1560)
.|+++|+++.|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.++|+++.. .+.
T Consensus 12 ~l~i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~ 88 (259)
T PRK14274 12 VYQINGMNLWYGQ---HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDL 88 (259)
T ss_pred eEEEeeEEEEECC---eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCH
Confidence 5899999999963 358999999999999999999999999999999999987 3 69999999999863 344
Q ss_pred HHHhccEEEEecCCcCccccHHHHHhcCCCCC---CHHHHHHHHHHhhhHHHHHhCCC--CCCcccCCCCCCCChHHHHH
Q 000406 745 KWLRTQIGMVGQEPILFATSILENVLMGKENA---TMKEAVAACKAASAHSFISELPL--GYDTQVGDRGTQLSGGQKQR 819 (1560)
Q Consensus 745 ~~lr~~i~~v~Q~~~lf~~Tv~eNi~~g~~~~---~~~~~~~~~~~~~~~~~i~~l~~--gl~t~~~~~g~~LSgGQrQR 819 (1560)
..+|+.|+|++|++.+|+.|++||+.++.... ..++..+. +.+.++.+.. .+...++..+.+||||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qr 163 (259)
T PRK14274 89 VELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEI-----VEKSLKDVALWDEVKDRLHTQALSLSGGQQQR 163 (259)
T ss_pred HHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHH-----HHHHHHHcCCchhhhhhhhCCcccCCHHHHHH
Confidence 56778899999999999899999998753211 11211111 1122222211 11234466778999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhHhh
Q 000406 820 IALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLE 898 (1560)
Q Consensus 820 ialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l~~ 898 (1560)
++|||||+.+|+||||||||++||+.++..+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 164 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 243 (259)
T PRK14274 164 LCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMFS 243 (259)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHHhh
Confidence 99999999999999999999999999999999999998778999999999999865 99999999999999999998864
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=364.55 Aligned_cols=217 Identities=24% Similarity=0.452 Sum_probs=184.8
Q ss_pred cEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHH-Hhcc
Q 000406 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKW-LRTQ 750 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~-lr~~ 750 (1560)
.|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+... .|++
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (241)
T PRK10895 3 TLTAKNLAKAYKG---RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRG 79 (241)
T ss_pred eEEEeCcEEEeCC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhC
Confidence 4889999999963 46999999999999999999999999999999999999999999999999998766543 5678
Q ss_pred EEEEecCCcCccc-cHHHHHhcCCCC---CCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHHh
Q 000406 751 IGMVGQEPILFAT-SILENVLMGKEN---ATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAM 826 (1560)
Q Consensus 751 i~~v~Q~~~lf~~-Tv~eNi~~g~~~---~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARAl 826 (1560)
++|++|++.++.. |++||+.++... ...++. ...+.+.++.+ |++........+||||||||++|||||
T Consensus 80 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral 152 (241)
T PRK10895 80 IGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQR-----EDRANELMEEF--HIEHLRDSMGQSLSGGERRRVEIARAL 152 (241)
T ss_pred eEEeccCCcccccCcHHHHHhhhhhcccccCHHHH-----HHHHHHHHHHc--CCHHHhhcchhhCCHHHHHHHHHHHHH
Confidence 9999999998875 999999875321 111111 12233455555 565666777889999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhHhh
Q 000406 827 IKDPRILLLDEPTSALDSESESIVQQAIDKIS-VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLE 898 (1560)
Q Consensus 827 ~~~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l~~ 898 (1560)
+.+|++|||||||++||+.+...+.+.++++. +|+|+|++||+++.+.. ||+|++|++|++++.|++++++.
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 153 AANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 99999999999999999999999999998774 48999999999988765 99999999999999999988764
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-38 Score=362.64 Aligned_cols=225 Identities=24% Similarity=0.397 Sum_probs=183.8
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEe-----cCCCCHHH
Q 000406 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVD-----LREINVKW 1387 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvd-----i~~i~l~~ 1387 (1560)
-|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.+ +...+...
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~ 82 (258)
T PRK11701 6 LLSVRGLTKLYGP---RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAE 82 (258)
T ss_pred eEEEeeeEEEcCC---ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHH
Confidence 4899999999963 359999999999999999999999999999999999999999999999998 87776554
Q ss_pred ----HhhceEEEcCCCC--CC-CccHHHHHhcCC---CCCCHHHHHHHHHHHhHHHHHHhCCCCcc-ccccCCCCCCChH
Q 000406 1388 ----LRKQTALVGQEPA--LF-AGTIRDNIALGN---PKASWAEIEEAAEEAYIHKFISSLPQGYE-TQVGESGVQLSGG 1456 (1560)
Q Consensus 1388 ----LR~~I~~VpQdp~--LF-~gTIreNL~~g~---~~~sd~eI~~al~~a~l~~~I~~Lp~Gld-t~Vge~G~~LSGG 1456 (1560)
+|+.++||||++. ++ ..|+.+|+.+.. ......++.+ .+.+++..+ |++ +.+...+.+||||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LS~G 155 (258)
T PRK11701 83 RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRA-----TAGDWLERV--EIDAARIDDLPTTFSGG 155 (258)
T ss_pred HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHH-----HHHHHHHHc--CCChhHHhCCCccCCHH
Confidence 3567999999984 33 358888885421 1111122211 234555555 333 3456677889999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CceEEEEecChHHHhh-cCEEEEEeCCEEEEecC
Q 000406 1457 QKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSK--RATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGS 1533 (1560)
Q Consensus 1457 QrQRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~--~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt 1533 (1560)
||||++|||||+++|+||||||||++||+.+.+.+.+.|++..+ +.|+|+|||+++.+.. ||+|++|++|++++.|+
T Consensus 156 q~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~ 235 (258)
T PRK11701 156 MQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGL 235 (258)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999998653 7899999999999975 99999999999999999
Q ss_pred HHHHHhhccChHHHH
Q 000406 1534 HETLLASHLNGVYAS 1548 (1560)
Q Consensus 1534 ~~eLl~~~~~g~y~~ 1548 (1560)
++++..+ ....|.+
T Consensus 236 ~~~~~~~-~~~~~~~ 249 (258)
T PRK11701 236 TDQVLDD-PQHPYTQ 249 (258)
T ss_pred HHHHhcC-CCCHHHH
Confidence 9999863 2333543
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=378.88 Aligned_cols=216 Identities=28% Similarity=0.490 Sum_probs=182.2
Q ss_pred cEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHHHhccE
Q 000406 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQI 751 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 751 (1560)
.|+++|++++|++ ..+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...+++|
T Consensus 41 ~i~i~nl~k~y~~---~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~i 116 (340)
T PRK13536 41 AIDLAGVSKSYGD---KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARI 116 (340)
T ss_pred eEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccE
Confidence 5999999999963 45999999999999999999999999999999999999999999999999987654 4567889
Q ss_pred EEEecCCcCcc-ccHHHHHhcCCCC--CCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHHhcc
Q 000406 752 GMVGQEPILFA-TSILENVLMGKEN--ATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIK 828 (1560)
Q Consensus 752 ~~v~Q~~~lf~-~Tv~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARAl~~ 828 (1560)
|||||++.++. .|++||+.+.... ....+..+.+ .++++.+ |+.........+||||||||++|||||+.
T Consensus 117 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~ll~~~--~L~~~~~~~~~~LS~G~kqrv~lA~aL~~ 189 (340)
T PRK13536 117 GVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVI-----PSLLEFA--RLESKADARVSDLSGGMKRRLTLARALIN 189 (340)
T ss_pred EEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHHc--CCchhhCCChhhCCHHHHHHHHHHHHHhc
Confidence 99999999875 5999999753211 1222221111 1223322 44444556667899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhHhh
Q 000406 829 DPRILLLDEPTSALDSESESIVQQAIDKIS-VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLE 898 (1560)
Q Consensus 829 ~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l~~ 898 (1560)
+|++|||||||++||+.++..+.+.|+++. +|+|||++||+++.+.. ||+|++|++|+++..|+++++..
T Consensus 190 ~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 261 (340)
T PRK13536 190 DPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALID 261 (340)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999999874 48999999999999976 99999999999999999999865
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-39 Score=371.72 Aligned_cols=215 Identities=31% Similarity=0.471 Sum_probs=177.9
Q ss_pred EEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHHH----hc
Q 000406 674 EFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWL----RT 749 (1560)
Q Consensus 674 ~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~l----r~ 749 (1560)
.++|++++|+. ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ ++
T Consensus 26 ~~~~~~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~ 102 (269)
T cd03294 26 SKEEILKKTGQ---TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK 102 (269)
T ss_pred hhhhhhhhcCC---ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcC
Confidence 46678888853 458999999999999999999999999999999999999999999999999887655432 45
Q ss_pred cEEEEecCCcCcc-ccHHHHHhcCCCC--CCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHHh
Q 000406 750 QIGMVGQEPILFA-TSILENVLMGKEN--ATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAM 826 (1560)
Q Consensus 750 ~i~~v~Q~~~lf~-~Tv~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARAl 826 (1560)
+++|++|++.+|. .|++||+.++... ....+.. ..+.+.++.+ |+...+.....+||||||||++|||||
T Consensus 103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~Gq~qrv~lAral 175 (269)
T cd03294 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAERE-----ERAAEALELV--GLEGWEHKYPDELSGGMQQRVGLARAL 175 (269)
T ss_pred cEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CCHhHhhCCcccCCHHHHHHHHHHHHH
Confidence 7999999999886 5999999875311 1111111 1122334443 454455666679999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhHhh
Q 000406 827 IKDPRILLLDEPTSALDSESESIVQQAIDKIS--VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLE 898 (1560)
Q Consensus 827 ~~~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l~~ 898 (1560)
+.+|+||||||||++||+.+++.+.+.|+++. .|+|+|++||+++.+.. ||+|++|++|++++.|++++++.
T Consensus 176 ~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 250 (269)
T cd03294 176 AVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILT 250 (269)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999998873 38999999999999865 99999999999999999998865
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=366.06 Aligned_cols=212 Identities=29% Similarity=0.453 Sum_probs=182.8
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCC--------ccEEEECCEecCCCCH
Q 000406 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPN--------QGKVMIEGVDLREINV 1385 (1560)
Q Consensus 1314 I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~--------~G~I~IdGvdi~~i~l 1385 (1560)
|+++|++++|.. .++|+|+||+|++||++||+|+||||||||+++|+|+++|+ +|+|.+||.++...+.
T Consensus 2 l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (272)
T PRK13547 2 LTADHLHVARRH---RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDA 78 (272)
T ss_pred eEEEEEEEEECC---EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCH
Confidence 789999999953 35999999999999999999999999999999999999998 9999999999988888
Q ss_pred HHHhhceEEEcCCCC-CCCccHHHHHhcCC-CCC------C---HHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCC
Q 000406 1386 KWLRKQTALVGQEPA-LFAGTIRDNIALGN-PKA------S---WAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLS 1454 (1560)
Q Consensus 1386 ~~LR~~I~~VpQdp~-LF~gTIreNL~~g~-~~~------s---d~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LS 1454 (1560)
..+++.++|+||++. +|..|++||+.++. +.. + .+.++++++.. |+++.++.....||
T Consensus 79 ~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS 147 (272)
T PRK13547 79 PRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALA-----------GATALVGRDVTTLS 147 (272)
T ss_pred HHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHc-----------CcHhhhcCCcccCC
Confidence 888889999999986 67889999998752 110 1 12233444443 34444555667899
Q ss_pred hHHHHHHHHHHHHc---------cCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CceEEEEecChHHHhh-cCEEEE
Q 000406 1455 GGQKQRIAIARAIL---------KGSRVLLLDEASSALDLESEKHVQDALRKVSK--RATTIVVAHRLSTIRE-ANMIAV 1522 (1560)
Q Consensus 1455 GGQrQRLaLARALL---------r~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~--~~TvI~IAHRlsti~~-aDrIlV 1522 (1560)
||||||++|||||+ .+|++|||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++
T Consensus 148 gG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~ 227 (272)
T PRK13547 148 GGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAM 227 (272)
T ss_pred HHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEE
Confidence 99999999999999 59999999999999999999999999998753 6899999999999964 999999
Q ss_pred EeCCEEEEecCHHHHHh
Q 000406 1523 VRDGAVVEYGSHETLLA 1539 (1560)
Q Consensus 1523 Ld~G~IvE~Gt~~eLl~ 1539 (1560)
|++|+|++.|++++++.
T Consensus 228 l~~G~i~~~g~~~~~~~ 244 (272)
T PRK13547 228 LADGAIVAHGAPADVLT 244 (272)
T ss_pred EECCeEEEecCHHHHcC
Confidence 99999999999999875
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-39 Score=357.80 Aligned_cols=203 Identities=24% Similarity=0.420 Sum_probs=172.5
Q ss_pred EEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHHHhccEE
Q 000406 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIG 752 (1560)
Q Consensus 673 i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~ 752 (1560)
|+++|++++|++ .++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++... ..+++.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~ 75 (208)
T cd03268 1 LKTNDLTKTYGK---KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIG 75 (208)
T ss_pred CEEEEEEEEECC---eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEE
Confidence 578999999963 4699999999999999999999999999999999999999999999999988654 45677899
Q ss_pred EEecCCcCcc-ccHHHHHhcCCC--CCCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHHhccC
Q 000406 753 MVGQEPILFA-TSILENVLMGKE--NATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKD 829 (1560)
Q Consensus 753 ~v~Q~~~lf~-~Tv~eNi~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARAl~~~ 829 (1560)
||+|++.++. .|++||+.++.. ....+++.++++.. |++......+.+||||||||++||||++.+
T Consensus 76 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 144 (208)
T cd03268 76 ALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVV-----------GLKDSAKKKVKGFSLGMKQRLGIALALLGN 144 (208)
T ss_pred EecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHc-----------CCHHHHhhhHhhCCHHHHHHHHHHHHHhcC
Confidence 9999998885 599999987532 11223333333333 343444556678999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCcccccc-CCEEEEEeCCeEEEec
Q 000406 830 PRILLLDEPTSALDSESESIVQQAIDKIS-VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIG 891 (1560)
Q Consensus 830 p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G 891 (1560)
|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 145 PDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999998874 58999999999999875 9999999999998765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=337.44 Aligned_cols=219 Identities=29% Similarity=0.439 Sum_probs=186.4
Q ss_pred EEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHHHhccEE
Q 000406 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIG 752 (1560)
Q Consensus 673 i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~ 752 (1560)
|++.+++++|++ ...+++||||+++.||+++|.|+|||||||+|++|..++.|++|+|++||.|.... +...|++||
T Consensus 2 l~v~~l~K~y~~--~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~-p~~vrr~IG 78 (245)
T COG4555 2 LEVTDLTKSYGS--KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRD-PSFVRRKIG 78 (245)
T ss_pred eeeeehhhhccC--HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccC-hHHHhhhcc
Confidence 688999999975 34589999999999999999999999999999999999999999999999998764 456788999
Q ss_pred EEecCCcCccc-cHHHHHhcCCCCCCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHHhccCCC
Q 000406 753 MVGQEPILFAT-SILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPR 831 (1560)
Q Consensus 753 ~v~Q~~~lf~~-Tv~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARAl~~~p~ 831 (1560)
+++-+.-|+.. |++|||.|...-.......-.++.+ +..+.+ +++..++++..+||-|+||||+|||||+++|+
T Consensus 79 Vl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~---~l~k~l--~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~ 153 (245)
T COG4555 79 VLFGERGLYARLTARENLKYFARLNGLSRKEIKARIA---ELSKRL--QLLEYLDRRVGEFSTGMKQKVAIARALVHDPS 153 (245)
T ss_pred eecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHH---HHHHHh--ChHHHHHHHHhhhchhhHHHHHHHHHHhcCCC
Confidence 99988888875 9999999864321211111122222 333443 55566677778999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhcC-CcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhHhhh
Q 000406 832 ILLLDEPTSALDSESESIVQQAIDKISV-GRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLER 899 (1560)
Q Consensus 832 illLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l~~~ 899 (1560)
|+|||||||+||..+.+.+.+.|.++.. |++||+.||.++.++. ||+|++|.+|+++..|+++++.++
T Consensus 154 i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r 223 (245)
T COG4555 154 ILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR 223 (245)
T ss_pred eEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence 9999999999999999999999999865 9999999999999985 999999999999999999998764
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-39 Score=360.72 Aligned_cols=209 Identities=33% Similarity=0.487 Sum_probs=173.8
Q ss_pred EEEEEEEEEcCCCC-CccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHHHhccE
Q 000406 673 IEFKGVTFAYPSRP-ETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQI 751 (1560)
Q Consensus 673 i~~~~vs~~y~~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 751 (1560)
|+++|++++|+... ..++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.. .++++
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 47899999997411 1469999999999999999999999999999999999999999999999998763 35689
Q ss_pred EEEecCCcCcc-ccHHHHHhcCCCC--CCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHHhcc
Q 000406 752 GMVGQEPILFA-TSILENVLMGKEN--ATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIK 828 (1560)
Q Consensus 752 ~~v~Q~~~lf~-~Tv~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARAl~~ 828 (1560)
+||+|++.+|. .|++||+.++... ...++.. ..+.+.++.+ |++........+||||||||++|||||+.
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrl~la~al~~ 148 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEAR-----ERAEELLELV--GLSGFENAYPHQLSGGMRQRVALARALAV 148 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CChhhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 99999999987 5999999875321 1111111 1223344444 55555666678999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCcccccc-CCEEEEEe--CCeEEEecCh
Q 000406 829 DPRILLLDEPTSALDSESESIVQQAIDKIS--VGRTTIVIAHRLATVKN-ANTIVVLD--QGSVVEIGNH 893 (1560)
Q Consensus 829 ~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~D~i~vl~--~G~iv~~G~~ 893 (1560)
+|++|||||||++||+.++..+.+.|+++. .++|+|+|||+++.+.. ||+|++|+ +|++++.++.
T Consensus 149 ~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 149 DPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 999999999999999999999999998873 48999999999998865 99999999 7999998764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=354.56 Aligned_cols=202 Identities=35% Similarity=0.558 Sum_probs=175.5
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhhceE
Q 000406 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTA 1393 (1560)
Q Consensus 1314 I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~~I~ 1393 (1560)
++++||+++|+. +++|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+ .+|+.++
T Consensus 1 ~~~~~l~~~~~~-----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~ 73 (213)
T TIGR01277 1 LALDKVRYEYEH-----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVS 73 (213)
T ss_pred CeEEeeeEEeCC-----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceE
Confidence 478999999952 468999999999999999999999999999999999999999999999987654 4678899
Q ss_pred EEcCCCCCCCc-cHHHHHhcCC-CC-----CCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 000406 1394 LVGQEPALFAG-TIRDNIALGN-PK-----ASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARA 1466 (1560)
Q Consensus 1394 ~VpQdp~LF~g-TIreNL~~g~-~~-----~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLARA 1466 (1560)
|+||+|.+|.+ |++||+.++. +. ..++++.++++..++.+.....| .+||||||||++||||
T Consensus 74 ~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~lara 142 (213)
T TIGR01277 74 MLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLP-----------EQLSGGQRQRVALARC 142 (213)
T ss_pred EEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCc-----------ccCCHHHHHHHHHHHH
Confidence 99999999875 9999997531 11 12345667777777766655544 3799999999999999
Q ss_pred HccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CceEEEEecChHHHhh-cCEEEEEeCCEEEEecC
Q 000406 1467 ILKGSRVLLLDEASSALDLESEKHVQDALRKVSK--RATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGS 1533 (1560)
Q Consensus 1467 LLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~--~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt 1533 (1560)
++++|+||||||||++||+++...+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|.
T Consensus 143 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 143 LVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 9999999999999999999999999999998753 6899999999999875 99999999999999874
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=367.77 Aligned_cols=220 Identities=30% Similarity=0.445 Sum_probs=183.7
Q ss_pred CcccEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCC-----CCccEEEECCeecCC--
Q 000406 669 VSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYD-----PTKGLITLDGHDLKS-- 741 (1560)
Q Consensus 669 ~~g~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~-----~~~G~I~i~g~~i~~-- 741 (1560)
....|+++|++++|+. +++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 17 ~~~~l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~ 93 (267)
T PRK14237 17 EEIALSTKDLHVYYGK---KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKE 93 (267)
T ss_pred CCeEEEEeeEEEEECC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEccccc
Confidence 3446999999999963 469999999999999999999999999999999999996 589999999999864
Q ss_pred ccHHHHhccEEEEecCCcCccccHHHHHhcCCCCC---CHH----HHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCCh
Q 000406 742 LQVKWLRTQIGMVGQEPILFATSILENVLMGKENA---TMK----EAVAACKAASAHSFISELPLGYDTQVGDRGTQLSG 814 (1560)
Q Consensus 742 ~~~~~lr~~i~~v~Q~~~lf~~Tv~eNi~~g~~~~---~~~----~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSg 814 (1560)
.+...+++.|+||+|++.+|+.|++|||.++.... ..+ ++.++++..++.+ +++...+..+.+|||
T Consensus 94 ~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~i~~~~~~~~~~LS~ 166 (267)
T PRK14237 94 INVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWD-------QVKDDLHKSALTLSG 166 (267)
T ss_pred CChHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCc-------hhhhhhcCCcccCCH
Confidence 34556788999999999999899999998753211 111 1122222222211 122445677889999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCcccccc-CCEEEEEeCCeEEEecCh
Q 000406 815 GQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNH 893 (1560)
Q Consensus 815 GQrQRialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~ 893 (1560)
|||||++|||||+++|++|||||||++||+.+...+.+.|+++.++.|+|+|||+++.+.. ||+|++|++|++++.|++
T Consensus 167 G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~ 246 (267)
T PRK14237 167 GQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKT 246 (267)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999988778999999999999865 999999999999999999
Q ss_pred hhHhh
Q 000406 894 RQLLE 898 (1560)
Q Consensus 894 ~~l~~ 898 (1560)
+++..
T Consensus 247 ~~~~~ 251 (267)
T PRK14237 247 RNIFT 251 (267)
T ss_pred HHHhc
Confidence 88865
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=367.33 Aligned_cols=219 Identities=30% Similarity=0.493 Sum_probs=181.2
Q ss_pred cEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCC-----CccEEEECCeecCCc--cH
Q 000406 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDP-----TKGLITLDGHDLKSL--QV 744 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~-----~~G~I~i~g~~i~~~--~~ 744 (1560)
.|+++|+++.|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++... +.
T Consensus 12 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 88 (258)
T PRK14268 12 QIKVENLNLWYGE---KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDV 88 (258)
T ss_pred eEEEeeeEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchH
Confidence 5999999999963 4589999999999999999999999999999999999985 799999999998643 23
Q ss_pred HHHhccEEEEecCCcCccccHHHHHhcCCCC--CCHHHHHHHHHHhhhHHHHHhCCC--CCCcccCCCCCCCChHHHHHH
Q 000406 745 KWLRTQIGMVGQEPILFATSILENVLMGKEN--ATMKEAVAACKAASAHSFISELPL--GYDTQVGDRGTQLSGGQKQRI 820 (1560)
Q Consensus 745 ~~lr~~i~~v~Q~~~lf~~Tv~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~--gl~t~~~~~g~~LSgGQrQRi 820 (1560)
..+++.++|++|++.+|+.|++||+.++... ...++..+ .+.+.++.+.. ......+..+.+||||||||+
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv 163 (258)
T PRK14268 89 VELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDG-----VVENALRSAALWDETSDRLKSPALSLSGGQQQRL 163 (258)
T ss_pred HHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHH
Confidence 4567789999999999999999999875311 12211111 11222332211 112344566789999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhHhh
Q 000406 821 ALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLE 898 (1560)
Q Consensus 821 alARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l~~ 898 (1560)
+|||||+.+|+||||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 164 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 242 (258)
T PRK14268 164 CIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFH 242 (258)
T ss_pred HHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999999999988668999999999999865 99999999999999999998864
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=363.59 Aligned_cols=213 Identities=23% Similarity=0.313 Sum_probs=174.6
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccc--CCCccEEEECCEecCCCCHHHH-hh
Q 000406 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFY--DPNQGKVMIEGVDLREINVKWL-RK 1390 (1560)
Q Consensus 1314 I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~--~p~~G~I~IdGvdi~~i~l~~L-R~ 1390 (1560)
|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|+|++ +|++|+|.+||.++...+.... |.
T Consensus 1 l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (243)
T TIGR01978 1 LKIKDLHVSVED---KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARA 77 (243)
T ss_pred CeEeeEEEEECC---EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhcc
Confidence 578999999963 45999999999999999999999999999999999994 7999999999999988877654 45
Q ss_pred ceEEEcCCCCCCCc-cHHHHHhcCCCC---------CCH----HHHHHHHHHHhHHHHHHhCCCCccccccCCCC-CCCh
Q 000406 1391 QTALVGQEPALFAG-TIRDNIALGNPK---------ASW----AEIEEAAEEAYIHKFISSLPQGYETQVGESGV-QLSG 1455 (1560)
Q Consensus 1391 ~I~~VpQdp~LF~g-TIreNL~~g~~~---------~sd----~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~-~LSG 1455 (1560)
.++|+||++.+|.+ |+++|+.+.... .+. +++.++++..++. .. ....... .|||
T Consensus 78 ~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~---~~~~~~~~~LS~ 147 (243)
T TIGR01978 78 GLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMD-------EE---FLNRSVNEGFSG 147 (243)
T ss_pred ceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCc-------hh---hcccccccCcCH
Confidence 59999999998876 899998653110 111 1223333333322 11 1122222 4999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCceEEEEecChHHHhh--cCEEEEEeCCEEEEec
Q 000406 1456 GQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVS-KRATTIVVAHRLSTIRE--ANMIAVVRDGAVVEYG 1532 (1560)
Q Consensus 1456 GQrQRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~-~~~TvI~IAHRlsti~~--aDrIlVLd~G~IvE~G 1532 (1560)
|||||++|||||+.+|+||||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++++.|
T Consensus 148 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g 227 (243)
T TIGR01978 148 GEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSG 227 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEec
Confidence 99999999999999999999999999999999999999999875 46899999999999976 7999999999999999
Q ss_pred CHHHHHh
Q 000406 1533 SHETLLA 1539 (1560)
Q Consensus 1533 t~~eLl~ 1539 (1560)
+++++..
T Consensus 228 ~~~~~~~ 234 (243)
T TIGR01978 228 DVELAKE 234 (243)
T ss_pred CHHHhcc
Confidence 9986543
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=361.24 Aligned_cols=213 Identities=35% Similarity=0.509 Sum_probs=174.5
Q ss_pred EEEEEEEEEcCCCC-CccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccH---HHHh
Q 000406 673 IEFKGVTFAYPSRP-ETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQV---KWLR 748 (1560)
Q Consensus 673 i~~~~vs~~y~~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~---~~lr 748 (1560)
|+++||+++|+... ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 78999999996421 1268999999999999999999999999999999999999999999999999987663 4677
Q ss_pred ccEEEEecCC--cCc-cccHHHHHhcCCCCC---CHHHHHHHHHHhhhHHHHHhCCCCCC-cccCCCCCCCChHHHHHHH
Q 000406 749 TQIGMVGQEP--ILF-ATSILENVLMGKENA---TMKEAVAACKAASAHSFISELPLGYD-TQVGDRGTQLSGGQKQRIA 821 (1560)
Q Consensus 749 ~~i~~v~Q~~--~lf-~~Tv~eNi~~g~~~~---~~~~~~~~~~~~~~~~~i~~l~~gl~-t~~~~~g~~LSgGQrQRia 821 (1560)
++++|++|++ .++ ..|++||+.++.... ..++..+.+ ..+.++.+ |+. ...+..+.+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~----~~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv~ 155 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEA----VLLLLVGV--GLPEEVLNRYPHELSGGQRQRVA 155 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHH----HHHHHHHC--CCChhHhhCCchhcCHHHHHHHH
Confidence 8899999999 344 369999997642111 111111100 12334444 443 4556777899999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecCcccccc-CCEEEEEeCCeEEEec
Q 000406 822 LARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISV--GRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIG 891 (1560)
Q Consensus 822 lARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G 891 (1560)
|||||+.+|+||||||||++||+.++..+.+.|+++.+ |+|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 156 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 156 IARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 99999999999999999999999999999999998743 8999999999999875 9999999999998764
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=362.27 Aligned_cols=214 Identities=28% Similarity=0.476 Sum_probs=178.8
Q ss_pred EEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHH-HhccE
Q 000406 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKW-LRTQI 751 (1560)
Q Consensus 673 i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~-lr~~i 751 (1560)
|+++||++.|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+... .++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (230)
T TIGR03410 1 LEVSNLNVYYGQ---SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI 77 (230)
T ss_pred CEEEeEEEEeCC---eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCe
Confidence 578999999973 35999999999999999999999999999999999999999999999999998776543 46689
Q ss_pred EEEecCCcCccc-cHHHHHhcCCCCCCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHHhccCC
Q 000406 752 GMVGQEPILFAT-SILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDP 830 (1560)
Q Consensus 752 ~~v~Q~~~lf~~-Tv~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARAl~~~p 830 (1560)
+|++|++.+|+. |++||+.++........ .+. ..+.+..+ .++....+....+||||||||++|||||+++|
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~-~~~-----~~~~l~~~-~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 150 (230)
T TIGR03410 78 AYVPQGREIFPRLTVEENLLTGLAALPRRS-RKI-----PDEIYELF-PVLKEMLGRRGGDLSGGQQQQLAIARALVTRP 150 (230)
T ss_pred EEeccCCcccCCCcHHHHHHHHHHhcCcch-HHH-----HHHHHHHH-HhHHHHhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 999999999986 99999987532211110 000 01112222 12333456667799999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhH
Q 000406 831 RILLLDEPTSALDSESESIVQQAIDKISV--GRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQL 896 (1560)
Q Consensus 831 ~illLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l 896 (1560)
++|||||||++||+.+...+.+.|.++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 151 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 151 KLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred CEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 99999999999999999999999988743 7999999999999986 999999999999999998887
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=372.85 Aligned_cols=222 Identities=28% Similarity=0.470 Sum_probs=182.4
Q ss_pred cccEEEEEEEEEcCCCC--CccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCC----c-
Q 000406 670 SGKIEFKGVTFAYPSRP--ETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKS----L- 742 (1560)
Q Consensus 670 ~g~i~~~~vs~~y~~~~--~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~----~- 742 (1560)
.+.|+++|++++|++.. ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. .
T Consensus 4 ~~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 83 (289)
T PRK13645 4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIK 83 (289)
T ss_pred cceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccc
Confidence 36799999999997432 1358999999999999999999999999999999999999999999999998852 2
Q ss_pred cHHHHhccEEEEecCC--cCccccHHHHHhcCCCC--CCHHHHHHHHHHhhhHHHHHhCCCCCC-cccCCCCCCCChHHH
Q 000406 743 QVKWLRTQIGMVGQEP--ILFATSILENVLMGKEN--ATMKEAVAACKAASAHSFISELPLGYD-TQVGDRGTQLSGGQK 817 (1560)
Q Consensus 743 ~~~~lr~~i~~v~Q~~--~lf~~Tv~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~gl~-t~~~~~g~~LSgGQr 817 (1560)
+...+|+.|+||+|++ .+|..|++|||.++... ...++..+.+ .+.++.+ |+. ...+..+.+||||||
T Consensus 84 ~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~-----~~ll~~~--~L~~~~~~~~~~~LS~Gq~ 156 (289)
T PRK13645 84 EVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKV-----PELLKLV--QLPEDYVKRSPFELSGGQK 156 (289)
T ss_pred cHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHHc--CCChhHhcCChhhCCHHHH
Confidence 3456778899999998 46778999999875321 1222221111 1223332 342 345667789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChh
Q 000406 818 QRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKIS--VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHR 894 (1560)
Q Consensus 818 QRialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~ 894 (1560)
||++|||||+.+|++|||||||++||+.+++.+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|++++.|+++
T Consensus 157 qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 236 (289)
T PRK13645 157 RRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPF 236 (289)
T ss_pred HHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999998874 38999999999998865 9999999999999999988
Q ss_pred hHhh
Q 000406 895 QLLE 898 (1560)
Q Consensus 895 ~l~~ 898 (1560)
++..
T Consensus 237 ~~~~ 240 (289)
T PRK13645 237 EIFS 240 (289)
T ss_pred HHhc
Confidence 8754
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=367.10 Aligned_cols=218 Identities=31% Similarity=0.552 Sum_probs=182.9
Q ss_pred ccEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCc--------
Q 000406 671 GKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSL-------- 742 (1560)
Q Consensus 671 g~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~-------- 742 (1560)
+.|+++||++.|++ ..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 4 NKLNVIDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred ccEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence 56999999999963 4699999999999999999999999999999999999999999999999988542
Q ss_pred -----cHHHHhccEEEEecCCcCccc-cHHHHHhcCCC---CCCHHHHHHHHHHhhhHHHHHhCCCCCCccc-CCCCCCC
Q 000406 743 -----QVKWLRTQIGMVGQEPILFAT-SILENVLMGKE---NATMKEAVAACKAASAHSFISELPLGYDTQV-GDRGTQL 812 (1560)
Q Consensus 743 -----~~~~lr~~i~~v~Q~~~lf~~-Tv~eNi~~g~~---~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~-~~~g~~L 812 (1560)
....++++++||||++.+++. |++||+.++.. .....+.. ..+.+.++.+ |+.... +..+.+|
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~~L 153 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEAR-----ERAVKYLAKV--GIDERAQGKYPVHL 153 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHH-----HHHHHHHHHc--CCChhhhhCCcccC
Confidence 134567889999999999975 99999976421 11111111 1122344444 554443 5667899
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCcccccc-CCEEEEEeCCeEEEe
Q 000406 813 SGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKIS-VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEI 890 (1560)
Q Consensus 813 SgGQrQRialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~ 890 (1560)
|||||||++|||||+++|++|||||||++||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++++.
T Consensus 154 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 233 (257)
T PRK10619 154 SGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEE 233 (257)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999874 48999999999999986 999999999999999
Q ss_pred cChhhHhh
Q 000406 891 GNHRQLLE 898 (1560)
Q Consensus 891 G~~~~l~~ 898 (1560)
|+++++..
T Consensus 234 ~~~~~~~~ 241 (257)
T PRK10619 234 GAPEQLFG 241 (257)
T ss_pred CCHHHhhh
Confidence 99988764
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=346.82 Aligned_cols=178 Identities=37% Similarity=0.648 Sum_probs=164.4
Q ss_pred EEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHHHhccEE
Q 000406 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIG 752 (1560)
Q Consensus 673 i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~ 752 (1560)
|+++|++++|+.. ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++... ...+++.++
T Consensus 1 i~~~~~~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 78 (178)
T cd03247 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLIS 78 (178)
T ss_pred CEEEEEEEEeCCC-CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEE
Confidence 5789999999743 23589999999999999999999999999999999999999999999999988665 556778899
Q ss_pred EEecCCcCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHHhccCCCE
Q 000406 753 MVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRI 832 (1560)
Q Consensus 753 ~v~Q~~~lf~~Tv~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARAl~~~p~i 832 (1560)
|++|++.+|+.|++||+ +.+||||||||++||||++.+|++
T Consensus 79 ~~~q~~~~~~~tv~~~i---------------------------------------~~~LS~G~~qrv~laral~~~p~~ 119 (178)
T cd03247 79 VLNQRPYLFDTTLRNNL---------------------------------------GRRFSGGERQRLALARILLQDAPI 119 (178)
T ss_pred EEccCCeeecccHHHhh---------------------------------------cccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999997 458999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCccccccCCEEEEEeCCeEEEec
Q 000406 833 LLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIG 891 (1560)
Q Consensus 833 llLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~D~i~vl~~G~iv~~G 891 (1560)
|||||||++||+.+++.+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|
T Consensus 120 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 120 VLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999887789999999999999889999999999998754
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=366.06 Aligned_cols=223 Identities=28% Similarity=0.394 Sum_probs=184.4
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCC---ccEEEECCEecCCC-----C
Q 000406 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPN---QGKVMIEGVDLREI-----N 1384 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~---~G~I~IdGvdi~~i-----~ 1384 (1560)
-|+++||++.|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|+ +|+|.+||.++... .
T Consensus 4 ~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 80 (262)
T PRK09984 4 IIRVEKLAKTFNQ---HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARD 80 (262)
T ss_pred EEEEeeEEEEeCC---eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchh
Confidence 4899999999963 45999999999999999999999999999999999999986 49999999998654 2
Q ss_pred HHHHhhceEEEcCCCCCCC-ccHHHHHhcCCCC--------------CCHHHHHHHHHHHhHHHHHHhCCCCccccccCC
Q 000406 1385 VKWLRKQTALVGQEPALFA-GTIRDNIALGNPK--------------ASWAEIEEAAEEAYIHKFISSLPQGYETQVGES 1449 (1560)
Q Consensus 1385 l~~LR~~I~~VpQdp~LF~-gTIreNL~~g~~~--------------~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~ 1449 (1560)
...+|+.++|+||++.+|. .|+++|+.++... ...+++.++++..++.+. ....
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~ 149 (262)
T PRK09984 81 IRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHF-----------AHQR 149 (262)
T ss_pred HHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHH-----------HhCC
Confidence 4567889999999999887 5999999865211 012234455555544433 2334
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CceEEEEecChHHHhh-cCEEEEEeCC
Q 000406 1450 GVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSK--RATTIVVAHRLSTIRE-ANMIAVVRDG 1526 (1560)
Q Consensus 1450 G~~LSGGQrQRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~--~~TvI~IAHRlsti~~-aDrIlVLd~G 1526 (1560)
...||||||||++|||||+.+|+||||||||++||..+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|
T Consensus 150 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g 229 (262)
T PRK09984 150 VSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQG 229 (262)
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 457999999999999999999999999999999999999999999998753 7899999999998754 9999999999
Q ss_pred EEEEecCHHHHHhhccChHHHHHHHHh
Q 000406 1527 AVVEYGSHETLLASHLNGVYASLVRAE 1553 (1560)
Q Consensus 1527 ~IvE~Gt~~eLl~~~~~g~y~~l~~~q 1553 (1560)
++++.|+++++ . .....+++...
T Consensus 230 ~i~~~g~~~~~-~---~~~~~~~~~~~ 252 (262)
T PRK09984 230 HVFYDGSSQQF-D---NERFDHLYRSI 252 (262)
T ss_pred EEEEeCCHHHh-c---cHHHHHHHhhh
Confidence 99999999996 3 23455555544
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=358.17 Aligned_cols=207 Identities=31% Similarity=0.538 Sum_probs=173.6
Q ss_pred EEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHHHhccEE
Q 000406 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIG 752 (1560)
Q Consensus 673 i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~ 752 (1560)
|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+.. +++++
T Consensus 1 i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~ 75 (213)
T cd03301 1 VELENVTKRFGN---VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIA 75 (213)
T ss_pred CEEEeeEEEECC---eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEE
Confidence 578999999974 3589999999999999999999999999999999999999999999999998765432 46799
Q ss_pred EEecCCcCcc-ccHHHHHhcCCCC--CCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHHhccC
Q 000406 753 MVGQEPILFA-TSILENVLMGKEN--ATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKD 829 (1560)
Q Consensus 753 ~v~Q~~~lf~-~Tv~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARAl~~~ 829 (1560)
|++|++.+|. .|++||+.++... ...++..+ .+.+.++.+ |++......+.+||||||||++|||||+.+
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qr~~laral~~~ 148 (213)
T cd03301 76 MVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDE-----RVREVAELL--QIEHLLDRKPKQLSGGQRQRVALGRAIVRE 148 (213)
T ss_pred EEecChhhccCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCHHHHhCChhhCCHHHHHHHHHHHHHhcC
Confidence 9999999886 4999999875321 11222111 112233443 555556677789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCcccccc-CCEEEEEeCCeEEEec
Q 000406 830 PRILLLDEPTSALDSESESIVQQAIDKIS--VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIG 891 (1560)
Q Consensus 830 p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G 891 (1560)
|++|||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 149 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 149 PKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999999874 38999999999999876 9999999999999875
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=368.03 Aligned_cols=217 Identities=29% Similarity=0.437 Sum_probs=179.9
Q ss_pred cEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCC-----CCccEEEECCeecCC--ccH
Q 000406 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYD-----PTKGLITLDGHDLKS--LQV 744 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~-----~~~G~I~i~g~~i~~--~~~ 744 (1560)
.|+++|++++|++ ..+|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++.. .+.
T Consensus 21 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 97 (268)
T PRK14248 21 ILEVKDLSIYYGE---KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINV 97 (268)
T ss_pred eEEEEEEEEEeCC---ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccH
Confidence 5999999999963 458999999999999999999999999999999999864 789999999999864 334
Q ss_pred HHHhccEEEEecCCcCccccHHHHHhcCCCCC---CHH----HHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHH
Q 000406 745 KWLRTQIGMVGQEPILFATSILENVLMGKENA---TMK----EAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQK 817 (1560)
Q Consensus 745 ~~lr~~i~~v~Q~~~lf~~Tv~eNi~~g~~~~---~~~----~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQr 817 (1560)
..++++|+|++|++.+|+.|++||+.++.... ... .+.++++..++. .++....+..+.+||||||
T Consensus 98 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~~~~~~~LSgGq~ 170 (268)
T PRK14248 98 VNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALW-------DEVKDRLHSSALSLSGGQQ 170 (268)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCC-------cchHHHHhcCcccCCHHHH
Confidence 46678899999999999999999998753211 111 111222222111 1112334567789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhH
Q 000406 818 QRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQL 896 (1560)
Q Consensus 818 QRialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l 896 (1560)
||++|||||+.+|+||||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 171 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 250 (268)
T PRK14248 171 QRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQI 250 (268)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988667899999999998865 999999999999999999887
Q ss_pred hh
Q 000406 897 LE 898 (1560)
Q Consensus 897 ~~ 898 (1560)
..
T Consensus 251 ~~ 252 (268)
T PRK14248 251 FT 252 (268)
T ss_pred Hh
Confidence 64
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=376.89 Aligned_cols=227 Identities=29% Similarity=0.441 Sum_probs=185.2
Q ss_pred cEEEEEEEEEcCCCC-------CccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccH
Q 000406 672 KIEFKGVTFAYPSRP-------ETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQV 744 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~~-------~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~ 744 (1560)
.|+++|+++.|+... ...+|+||||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++..++.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 489999999997321 2468999999999999999999999999999999999999999999999999987764
Q ss_pred H---HHhccEEEEecCC--cCccc-cHHHHHhcCC---CCCCHHHHHHHHHHhhhHHHHHhCCCCCC-cccCCCCCCCCh
Q 000406 745 K---WLRTQIGMVGQEP--ILFAT-SILENVLMGK---ENATMKEAVAACKAASAHSFISELPLGYD-TQVGDRGTQLSG 814 (1560)
Q Consensus 745 ~---~lr~~i~~v~Q~~--~lf~~-Tv~eNi~~g~---~~~~~~~~~~~~~~~~~~~~i~~l~~gl~-t~~~~~g~~LSg 814 (1560)
. .+|++|+||+|+| .|++. ||.+|+..+. .....++. ...+.++++.+ |++ ......+.+|||
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~-----~~~~~~~l~~~--gL~~~~~~~~p~~LSg 157 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAER-----REKALAMMAKV--GLRPEHYDRYPHMFSG 157 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHH-----HHHHHHHHHHC--CCChHHhcCCCccCCH
Confidence 3 4677899999998 35554 9999986421 11122111 11223344444 443 234667789999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCcccccc-CCEEEEEeCCeEEEec
Q 000406 815 GQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKIS--VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIG 891 (1560)
Q Consensus 815 GQrQRialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G 891 (1560)
|||||++|||||+.+|+|||+||||++||+.++..+.+.|+++. .|.|+|+|||+++.+.. ||+|++|++|+|+|.|
T Consensus 158 Gq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g 237 (327)
T PRK11308 158 GQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKG 237 (327)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999874 38999999999999976 9999999999999999
Q ss_pred ChhhHhhhc-chHHH
Q 000406 892 NHRQLLERG-GAYHD 905 (1560)
Q Consensus 892 ~~~~l~~~~-~~~~~ 905 (1560)
+.+++++.. ..|.+
T Consensus 238 ~~~~~~~~p~hpyt~ 252 (327)
T PRK11308 238 TKEQIFNNPRHPYTQ 252 (327)
T ss_pred CHHHHhcCCCCHHHH
Confidence 999998643 34543
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-38 Score=366.46 Aligned_cols=220 Identities=28% Similarity=0.458 Sum_probs=184.6
Q ss_pred cEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHHHhccE
Q 000406 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQI 751 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 751 (1560)
.|+++|++++|++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...++++|
T Consensus 7 ~l~i~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 7 IIVFKNVSFQYQSD-ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred eEEEEEEEEEcCCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 58999999999742 24589999999999999999999999999999999999999999999999999877777788899
Q ss_pred EEEecCCc-Cc-cccHHHHHhcCCCC--CCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHHhc
Q 000406 752 GMVGQEPI-LF-ATSILENVLMGKEN--ATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMI 827 (1560)
Q Consensus 752 ~~v~Q~~~-lf-~~Tv~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARAl~ 827 (1560)
+||+|+|. +| ..|+++|+.++... ...++..+ .+.+.++.+ |+.......+.+||||||||++||||++
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~laral~ 158 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHR-----RVSEALKQV--DMLERADYEPNALSGGQKQRVAIAGVLA 158 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHH-----HHHHHHHHc--CCchhhhCCcccCCHHHHHHHHHHHHHH
Confidence 99999985 44 45899999886422 12222111 112223333 4444455667899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCccccccCCEEEEEeCCeEEEecChhhHhhh
Q 000406 828 KDPRILLLDEPTSALDSESESIVQQAIDKIS--VGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLER 899 (1560)
Q Consensus 828 ~~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~~D~i~vl~~G~iv~~G~~~~l~~~ 899 (1560)
.+|++|||||||++||+.+.+.+.+.|+++. .|+|+|+|||+++.+..||+|++|++|++++.|+++++...
T Consensus 159 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 159 LNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 9999999999999999999999999998874 37999999999999877999999999999999999887653
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=382.85 Aligned_cols=221 Identities=31% Similarity=0.509 Sum_probs=183.0
Q ss_pred cEEEEEEEEEcCCCC---------------------CccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCcc
Q 000406 672 KIEFKGVTFAYPSRP---------------------ETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKG 730 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~~---------------------~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G 730 (1560)
.|+++|+++.|+..+ ...+|+|+||+|++||+++|+||||||||||+++|+|+++|++|
T Consensus 4 ~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG 83 (400)
T PRK10070 4 KLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRG 83 (400)
T ss_pred EEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCC
Confidence 467777777775422 12379999999999999999999999999999999999999999
Q ss_pred EEEECCeecCCccHHHH----hccEEEEecCCcCccc-cHHHHHhcCCCC--CCHHHHHHHHHHhhhHHHHHhCCCCCCc
Q 000406 731 LITLDGHDLKSLQVKWL----RTQIGMVGQEPILFAT-SILENVLMGKEN--ATMKEAVAACKAASAHSFISELPLGYDT 803 (1560)
Q Consensus 731 ~I~i~g~~i~~~~~~~l----r~~i~~v~Q~~~lf~~-Tv~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~gl~t 803 (1560)
+|.++|.++...+...+ +++|+||+|++.+|+. ||+|||.++... ...++..+ .+.+.++.+ |++.
T Consensus 84 ~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~-----~~~e~L~~~--gL~~ 156 (400)
T PRK10070 84 QVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERRE-----KALDALRQV--GLEN 156 (400)
T ss_pred EEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCCh
Confidence 99999999988765443 4579999999999975 999999886321 11111111 122334443 5555
Q ss_pred ccCCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCcccccc-CCEEE
Q 000406 804 QVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKIS--VGRTTIVIAHRLATVKN-ANTIV 880 (1560)
Q Consensus 804 ~~~~~g~~LSgGQrQRialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~D~i~ 880 (1560)
.....+.+||||||||++|||||+.+|+||||||||++||+.+++.+++.|+++. .++|+|+|||+++.+.. ||+|+
T Consensus 157 ~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~ 236 (400)
T PRK10070 157 YAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIA 236 (400)
T ss_pred hhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEE
Confidence 5667778999999999999999999999999999999999999999999998873 48999999999999865 99999
Q ss_pred EEeCCeEEEecChhhHhhh
Q 000406 881 VLDQGSVVEIGNHRQLLER 899 (1560)
Q Consensus 881 vl~~G~iv~~G~~~~l~~~ 899 (1560)
+|++|++++.|++++++..
T Consensus 237 vL~~G~i~~~g~~~~l~~~ 255 (400)
T PRK10070 237 IMQNGEVVQVGTPDEILNN 255 (400)
T ss_pred EEECCEEEecCCHHHHHhC
Confidence 9999999999999998764
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=363.83 Aligned_cols=217 Identities=30% Similarity=0.521 Sum_probs=182.1
Q ss_pred cEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCC-----ccEEEECCeecCCc--cH
Q 000406 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPT-----KGLITLDGHDLKSL--QV 744 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~-----~G~I~i~g~~i~~~--~~ 744 (1560)
.|+++|++++|++ +.+|+|+||+|++|++++|+|+||||||||+++|+|+++|+ +|+|.++|.++... +.
T Consensus 4 ~l~~~~l~~~~~~---~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 80 (251)
T PRK14249 4 KIKIRGVNFFYHK---HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDV 80 (251)
T ss_pred eEEEEEEEEEECC---eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccCh
Confidence 5899999999963 45999999999999999999999999999999999999987 69999999998643 34
Q ss_pred HHHhccEEEEecCCcCccccHHHHHhcCCCC--CC-HHH----HHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHH
Q 000406 745 KWLRTQIGMVGQEPILFATSILENVLMGKEN--AT-MKE----AVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQK 817 (1560)
Q Consensus 745 ~~lr~~i~~v~Q~~~lf~~Tv~eNi~~g~~~--~~-~~~----~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQr 817 (1560)
..+|+.++||+|++.+|+.|++||+.++... .. .++ +.++++..++.+ ++....+..+.+||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS~Gq~ 153 (251)
T PRK14249 81 VNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWD-------EVKDNLHKSGLALSGGQQ 153 (251)
T ss_pred HHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCch-------hhhhHhhCCcccCCHHHH
Confidence 5678899999999999989999999876321 11 111 111222222221 122345677889999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhH
Q 000406 818 QRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQL 896 (1560)
Q Consensus 818 QRialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l 896 (1560)
||++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 154 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14249 154 QRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEI 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988668999999999999876 899999999999999999887
Q ss_pred hh
Q 000406 897 LE 898 (1560)
Q Consensus 897 ~~ 898 (1560)
..
T Consensus 234 ~~ 235 (251)
T PRK14249 234 FS 235 (251)
T ss_pred Hh
Confidence 64
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-38 Score=368.92 Aligned_cols=221 Identities=31% Similarity=0.485 Sum_probs=184.4
Q ss_pred cEEEEEEEEEcCCCC---CccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCcc-HHHH
Q 000406 672 KIEFKGVTFAYPSRP---ETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQ-VKWL 747 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~~---~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~-~~~l 747 (1560)
.|+++|++++|++.. .+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+.. ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 489999999997421 246999999999999999999999999999999999999999999999999987643 3456
Q ss_pred hccEEEEecCCc--CccccHHHHHhcCCCC--CCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHH
Q 000406 748 RTQIGMVGQEPI--LFATSILENVLMGKEN--ATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALA 823 (1560)
Q Consensus 748 r~~i~~v~Q~~~--lf~~Tv~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialA 823 (1560)
+++++||||+|. ++..|+.+|+.++... ....+..+ .+.+.++.+ |+....+....+||||||||++||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~~~LS~G~~qrv~la 156 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRE-----RVDESLKKV--GMYEYRRHAPHLLSGGQKQRVAIA 156 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHH-----HHHHHHHHC--CCHhHhhCCcccCCHHHHHHHHHH
Confidence 788999999984 6667999999886321 12221111 112223332 455555666789999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCccccccCCEEEEEeCCeEEEecChhhHhhh
Q 000406 824 RAMIKDPRILLLDEPTSALDSESESIVQQAIDKIS--VGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLER 899 (1560)
Q Consensus 824 RAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~~D~i~vl~~G~iv~~G~~~~l~~~ 899 (1560)
|||+.+|++|||||||++||+.+...+.+.|+++. .|+|+|+|||+++.+..||++++|++|++++.|+++++...
T Consensus 157 ral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 234 (280)
T PRK13633 157 GILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIFKE 234 (280)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 99999999999999999999999999999999874 38999999999999877999999999999999999998653
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=373.02 Aligned_cols=215 Identities=24% Similarity=0.407 Sum_probs=185.4
Q ss_pred EEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHHHhccEE
Q 000406 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIG 752 (1560)
Q Consensus 673 i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~ 752 (1560)
|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +...++++++
T Consensus 3 l~~~~l~~~~~~---~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig 78 (301)
T TIGR03522 3 IRVSSLTKLYGT---QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIG 78 (301)
T ss_pred EEEEEEEEEECC---EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceE
Confidence 789999999963 469999999999999999999999999999999999999999999999999876 3456788999
Q ss_pred EEecCCcCccc-cHHHHHhcCCCC--CCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHHhccC
Q 000406 753 MVGQEPILFAT-SILENVLMGKEN--ATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKD 829 (1560)
Q Consensus 753 ~v~Q~~~lf~~-Tv~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARAl~~~ 829 (1560)
|+||++.+++. |+.||+.+.... ...++..+ .+++.++.+ |++...+....+||||||||++|||||+.+
T Consensus 79 ~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la~al~~~ 151 (301)
T TIGR03522 79 YLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQ-----RVEEMIELV--GLRPEQHKKIGQLSKGYRQRVGLAQALIHD 151 (301)
T ss_pred EecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHC--CCchHhcCchhhCCHHHHHHHHHHHHHhcC
Confidence 99999999976 999999763211 11121111 122344444 666667777889999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhHhh
Q 000406 830 PRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLE 898 (1560)
Q Consensus 830 p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l~~ 898 (1560)
|++|||||||++||+.+.+.+++.|+++.+++|+|++||+++.+.. ||||++|++|+++..|+++++..
T Consensus 152 p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 152 PKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 9999999999999999999999999998778999999999999876 99999999999999999999865
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-38 Score=337.73 Aligned_cols=219 Identities=27% Similarity=0.436 Sum_probs=187.2
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHH-Hhhc
Q 000406 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKW-LRKQ 1391 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~-LR~~ 1391 (1560)
-++++||+..|.. ..+|++|||++++||+++++||||+|||||+++|+|+.+|.+|+|.++|.||+..+++. .|.-
T Consensus 3 mL~v~~l~~~YG~---~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~G 79 (237)
T COG0410 3 MLEVENLSAGYGK---IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLG 79 (237)
T ss_pred ceeEEeEeecccc---eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCC
Confidence 3789999999963 46999999999999999999999999999999999999999999999999999999876 4778
Q ss_pred eEEEcCCCCCCCc-cHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHccC
Q 000406 1392 TALVGQEPALFAG-TIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKG 1470 (1560)
Q Consensus 1392 I~~VpQdp~LF~g-TIreNL~~g~~~~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLARALLr~ 1470 (1560)
|+||||...+|+. ||.|||.+|.-...+++-+ ...+++.-+-+| -|.......+.+|||||+|-+||||||+.+
T Consensus 80 i~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~----~~~~e~v~~lFP-~Lker~~~~aG~LSGGEQQMLAiaRALm~~ 154 (237)
T COG0410 80 IAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQ----ERDLEEVYELFP-RLKERRNQRAGTLSGGEQQMLAIARALMSR 154 (237)
T ss_pred eEeCcccccchhhCcHHHHHhhhhhcccccccc----cccHHHHHHHCh-hHHHHhcCcccCCChHHHHHHHHHHHHhcC
Confidence 9999999999975 9999999873222111111 111222223344 355566677789999999999999999999
Q ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHHHh
Q 000406 1471 SRVLLLDEASSALDLESEKHVQDALRKVSK--RATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLA 1539 (1560)
Q Consensus 1471 p~ILILDEaTSaLD~~Te~~I~~~L~~~~~--~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eLl~ 1539 (1560)
|++|+|||||.+|-|.--+.|.++|+++.+ +.||++|-++...... +||.+||++|+|+..|+.+||.+
T Consensus 155 PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~ 226 (237)
T COG0410 155 PKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLA 226 (237)
T ss_pred CCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhc
Confidence 999999999999999999999999999874 4599999999998765 99999999999999999999997
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=381.21 Aligned_cols=205 Identities=27% Similarity=0.414 Sum_probs=172.0
Q ss_pred ccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCe----ecCCccHHHH---h-ccEEEEecCCc
Q 000406 688 TVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGH----DLKSLQVKWL---R-TQIGMVGQEPI 759 (1560)
Q Consensus 688 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~----~i~~~~~~~l---r-~~i~~v~Q~~~ 759 (1560)
..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|. ++...+...+ | ++|+||+|++.
T Consensus 37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~ 116 (382)
T TIGR03415 37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA 116 (382)
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCc
Confidence 46899999999999999999999999999999999999999999999996 5666554433 3 57999999999
Q ss_pred Ccc-ccHHHHHhcCCCC--CCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHHhccCCCEEEEe
Q 000406 760 LFA-TSILENVLMGKEN--ATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLD 836 (1560)
Q Consensus 760 lf~-~Tv~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARAl~~~p~illLD 836 (1560)
+|+ .|++||+.++... ...++.. ..+.+.++.+ |++......+.+||||||||++|||||+.+|+|||||
T Consensus 117 l~p~~Tv~eNi~~~~~~~g~~~~~~~-----~~a~e~le~v--gL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlD 189 (382)
T TIGR03415 117 LMPWLTVEENVAFGLEMQGMPEAERR-----KRVDEQLELV--GLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMD 189 (382)
T ss_pred CCCCCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 998 5999999987421 1111111 1222334443 5555556677899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhHhhh
Q 000406 837 EPTSALDSESESIVQQAIDKIS--VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLER 899 (1560)
Q Consensus 837 Epts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l~~~ 899 (1560)
||||+||+.++..+++.|.++. .++|+|+|||+++.+.. ||+|++|++|++++.|++++++.+
T Consensus 190 EPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~ 255 (382)
T TIGR03415 190 EPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLN 255 (382)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC
Confidence 9999999999999999998874 38999999999999855 999999999999999999999754
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=367.20 Aligned_cols=217 Identities=29% Similarity=0.430 Sum_probs=182.3
Q ss_pred cEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHHHhccE
Q 000406 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQI 751 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 751 (1560)
.|+++|++++|++ ..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 11 ~l~i~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 87 (265)
T PRK10575 11 TFALRNVSFRVPG---RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKV 87 (265)
T ss_pred eEEEeeEEEEECC---EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhhe
Confidence 5899999999963 4699999999999999999999999999999999999999999999999999877777788899
Q ss_pred EEEecCCcCccc-cHHHHHhcCCCCC------CHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHH
Q 000406 752 GMVGQEPILFAT-SILENVLMGKENA------TMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALAR 824 (1560)
Q Consensus 752 ~~v~Q~~~lf~~-Tv~eNi~~g~~~~------~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialAR 824 (1560)
+|++|++.++.. |+.||+.++.... ...... ..+.+.++.+ |+...+.....+||||||||++|||
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~lar 160 (265)
T PRK10575 88 AYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADR-----EKVEEAISLV--GLKPLAHRLVDSLSGGERQRAWIAM 160 (265)
T ss_pred EEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHH-----HHHHHHHHHc--CCHHHhcCCcccCCHHHHHHHHHHH
Confidence 999999877765 9999998753210 000000 1112223332 3434455566789999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhHhh
Q 000406 825 AMIKDPRILLLDEPTSALDSESESIVQQAIDKIS--VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLE 898 (1560)
Q Consensus 825 Al~~~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l~~ 898 (1560)
||+.+|+||||||||++||+.+.+.+.+.|.++. .++|+|+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 161 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~ 237 (265)
T PRK10575 161 LVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMR 237 (265)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhcC
Confidence 9999999999999999999999999999999874 38999999999999865 99999999999999999988764
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=366.30 Aligned_cols=216 Identities=31% Similarity=0.517 Sum_probs=182.5
Q ss_pred EEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCcc---------
Q 000406 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQ--------- 743 (1560)
Q Consensus 673 i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~--------- 743 (1560)
|+++||++.|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++..++
T Consensus 1 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (252)
T TIGR03005 1 VRFSDVTKRFGI---LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPA 77 (252)
T ss_pred CEEEEEEEEeCC---eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccccc
Confidence 578999999963 45899999999999999999999999999999999999999999999999986542
Q ss_pred ----HHHHhccEEEEecCCcCcc-ccHHHHHhcCCC---CCCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChH
Q 000406 744 ----VKWLRTQIGMVGQEPILFA-TSILENVLMGKE---NATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGG 815 (1560)
Q Consensus 744 ----~~~lr~~i~~v~Q~~~lf~-~Tv~eNi~~g~~---~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgG 815 (1560)
...+++.++|++|++.+|. .|+.||+.++.. ....++.. ..+.+.++.+ |++...+..+.+||||
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LS~G 150 (252)
T TIGR03005 78 DEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAE-----KRAMELLDMV--GLADKADHMPAQLSGG 150 (252)
T ss_pred chhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CChhHhhcChhhcCHH
Confidence 2356788999999999886 699999987521 11111111 1223445554 5555667777899999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCcccccc-CCEEEEEeCCeEEEecC
Q 000406 816 QKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKIS--VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGN 892 (1560)
Q Consensus 816 QrQRialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~ 892 (1560)
||||++|||||+.+|++|||||||++||+.++..+.+.|+++. .++|+|+|||+++.+.. ||++++|++|++++.|+
T Consensus 151 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~ 230 (252)
T TIGR03005 151 QQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGK 230 (252)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999999874 38999999999999865 99999999999999999
Q ss_pred hhhHhh
Q 000406 893 HRQLLE 898 (1560)
Q Consensus 893 ~~~l~~ 898 (1560)
++++..
T Consensus 231 ~~~~~~ 236 (252)
T TIGR03005 231 PDEIFR 236 (252)
T ss_pred HHHHhc
Confidence 988764
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-38 Score=368.10 Aligned_cols=220 Identities=31% Similarity=0.525 Sum_probs=185.3
Q ss_pred ccEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCc---cEEEECCeecCCccHHHH
Q 000406 671 GKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTK---GLITLDGHDLKSLQVKWL 747 (1560)
Q Consensus 671 g~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~---G~I~i~g~~i~~~~~~~l 747 (1560)
+.|+++|++++|+.. ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++ |+|.++|.++...+...+
T Consensus 4 ~~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~ 82 (282)
T PRK13640 4 NIVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI 82 (282)
T ss_pred ceEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHH
Confidence 358999999999642 2458999999999999999999999999999999999999998 899999999987766677
Q ss_pred hccEEEEecCCc--CccccHHHHHhcCCCC--CCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHH
Q 000406 748 RTQIGMVGQEPI--LFATSILENVLMGKEN--ATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALA 823 (1560)
Q Consensus 748 r~~i~~v~Q~~~--lf~~Tv~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialA 823 (1560)
+++|+||+|+|. ++..|+.|||.++... .+.++..+ .+.+.++.+ |+....+....+||||||||++||
T Consensus 83 ~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~LS~G~~qrv~la 155 (282)
T PRK13640 83 REKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIK-----IVRDVLADV--GMLDYIDSEPANLSGGQKQRVAIA 155 (282)
T ss_pred HhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHH-----HHHHHHHHC--CChhHhcCCcccCCHHHHHHHHHH
Confidence 889999999984 5577999999876322 22222111 112233333 455556677789999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCccccccCCEEEEEeCCeEEEecChhhHhh
Q 000406 824 RAMIKDPRILLLDEPTSALDSESESIVQQAIDKIS--VGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLE 898 (1560)
Q Consensus 824 RAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~~D~i~vl~~G~iv~~G~~~~l~~ 898 (1560)
|||+.+|++|||||||++||+.++..+.+.|+++. .|+|||++||+++.+..||+|++|++|++++.|+++++..
T Consensus 156 ral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (282)
T PRK13640 156 GILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFS 232 (282)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999998874 3899999999999987799999999999999999988765
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=365.09 Aligned_cols=219 Identities=30% Similarity=0.472 Sum_probs=180.8
Q ss_pred cEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcC---CCC--CccEEEECCeecCCc--cH
Q 000406 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERF---YDP--TKGLITLDGHDLKSL--QV 744 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~---~~~--~~G~I~i~g~~i~~~--~~ 744 (1560)
.|+++|+++.|+. ..+|+|+||+|++||+++|+|+||||||||+++|+|+ ++| ++|+|.++|+++... +.
T Consensus 3 ~l~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14245 3 KIDARDVNFWYGD---FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV 79 (250)
T ss_pred EEEEEEEEEEECC---EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccH
Confidence 5899999999963 4589999999999999999999999999999999997 454 589999999998653 34
Q ss_pred HHHhccEEEEecCCcCccccHHHHHhcCCCCC---CHHHHHHHHHHhhhHHHHHhCC--CCCCcccCCCCCCCChHHHHH
Q 000406 745 KWLRTQIGMVGQEPILFATSILENVLMGKENA---TMKEAVAACKAASAHSFISELP--LGYDTQVGDRGTQLSGGQKQR 819 (1560)
Q Consensus 745 ~~lr~~i~~v~Q~~~lf~~Tv~eNi~~g~~~~---~~~~~~~~~~~~~~~~~i~~l~--~gl~t~~~~~g~~LSgGQrQR 819 (1560)
..+++.|+|+||++.+|+.|++||+.++.... ..+...+. +.+.++.+. ..+.+..+..+.+||||||||
T Consensus 80 ~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr 154 (250)
T PRK14245 80 DELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQR-----VEETLKGAALWDEVKDKLKESAFALSGGQQQR 154 (250)
T ss_pred HHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHH-----HHHHHHHcCCCcchhhhhhCCcccCCHHHHHH
Confidence 56778899999999999889999998753211 11111111 122233331 112234567788999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhHhh
Q 000406 820 IALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLE 898 (1560)
Q Consensus 820 ialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l~~ 898 (1560)
++|||||+.+|+||||||||++||+.+++.+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 155 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~~ 234 (250)
T PRK14245 155 LCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIFT 234 (250)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHhc
Confidence 99999999999999999999999999999999999998778999999999999865 99999999999999999998865
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-38 Score=364.37 Aligned_cols=220 Identities=29% Similarity=0.444 Sum_probs=180.1
Q ss_pred cEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCC--CC---CccEEEECCeecCCc--cH
Q 000406 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFY--DP---TKGLITLDGHDLKSL--QV 744 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~--~~---~~G~I~i~g~~i~~~--~~ 744 (1560)
.|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|++ .| ++|+|.++|+++... +.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14239 5 ILQVSDLSVYYNK---KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81 (252)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccch
Confidence 4899999999963 35899999999999999999999999999999999985 36 599999999998643 34
Q ss_pred HHHhccEEEEecCCcCccccHHHHHhcCCCC--CC-HHHHHHHHHHhhhHHHHHhCC--CCCCcccCCCCCCCChHHHHH
Q 000406 745 KWLRTQIGMVGQEPILFATSILENVLMGKEN--AT-MKEAVAACKAASAHSFISELP--LGYDTQVGDRGTQLSGGQKQR 819 (1560)
Q Consensus 745 ~~lr~~i~~v~Q~~~lf~~Tv~eNi~~g~~~--~~-~~~~~~~~~~~~~~~~i~~l~--~gl~t~~~~~g~~LSgGQrQR 819 (1560)
..+|+.++||+|++.+|+.|++||+.++... .. .+...+. +.+.++.+. .++.+..+..+.+||||||||
T Consensus 82 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr 156 (252)
T PRK14239 82 VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEA-----VEKSLKGASIWDEVKDRLHDSALGLSGGQQQR 156 (252)
T ss_pred HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHH-----HHHHHHHcCCchhHHHHHhcCcccCCHHHHHH
Confidence 4567889999999999999999999875211 11 1111111 112222221 112234566778999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhHhh
Q 000406 820 IALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLE 898 (1560)
Q Consensus 820 ialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l~~ 898 (1560)
++|||||+.+|+||||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 157 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 236 (252)
T PRK14239 157 VCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMFM 236 (252)
T ss_pred HHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999988667999999999998865 99999999999999999998865
Q ss_pred h
Q 000406 899 R 899 (1560)
Q Consensus 899 ~ 899 (1560)
.
T Consensus 237 ~ 237 (252)
T PRK14239 237 N 237 (252)
T ss_pred C
Confidence 3
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=373.97 Aligned_cols=199 Identities=23% Similarity=0.395 Sum_probs=170.8
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhhceEEEcCCCCCCCc-cHH
Q 000406 1329 VTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQEPALFAG-TIR 1407 (1560)
Q Consensus 1329 ~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~~I~~VpQdp~LF~g-TIr 1407 (1560)
.++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....+|++++|+||++.+|.. |++
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv~ 84 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVDEDLTGR 84 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCCCCCcHH
Confidence 369999999999999999999999999999999999999999999999999876 345678899999999999876 999
Q ss_pred HHHhcCCC--CCCH----HHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCc
Q 000406 1408 DNIALGNP--KASW----AEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASS 1481 (1560)
Q Consensus 1408 eNL~~g~~--~~sd----~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLARALLr~p~ILILDEaTS 1481 (1560)
|||.+... ..+. +++.++++..++.+. ......+||||||||++|||||+.+|++|||||||+
T Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 153 (302)
T TIGR01188 85 ENLEMMGRLYGLPKDEAEERAEELLELFELGEA-----------ADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTT 153 (302)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhH-----------hCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 99986321 1122 234444555444322 223345799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhc-CCceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHHHh
Q 000406 1482 ALDLESEKHVQDALRKVS-KRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLA 1539 (1560)
Q Consensus 1482 aLD~~Te~~I~~~L~~~~-~~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eLl~ 1539 (1560)
+||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 154 gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 213 (302)
T TIGR01188 154 GLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKR 213 (302)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence 999999999999999874 46899999999999976 99999999999999999999976
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=364.83 Aligned_cols=222 Identities=24% Similarity=0.458 Sum_probs=185.3
Q ss_pred cEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHH-Hhcc
Q 000406 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKW-LRTQ 750 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~-lr~~ 750 (1560)
.|+++|++++|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+... .+..
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (255)
T PRK11300 5 LLSVSGLMMRFGG---LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81 (255)
T ss_pred eEEEeeEEEEECC---EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcC
Confidence 4899999999963 46999999999999999999999999999999999999999999999999998776544 3456
Q ss_pred EEEEecCCcCccc-cHHHHHhcCCCCCCH----------HHH--HHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHH
Q 000406 751 IGMVGQEPILFAT-SILENVLMGKENATM----------KEA--VAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQK 817 (1560)
Q Consensus 751 i~~v~Q~~~lf~~-Tv~eNi~~g~~~~~~----------~~~--~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQr 817 (1560)
++|++|++.+|.. |++||+.++...... ... ........+.++++.+ |+....+..+.+||||||
T Consensus 82 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~LS~G~~ 159 (255)
T PRK11300 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERV--GLLEHANRQAGNLAYGQQ 159 (255)
T ss_pred eEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhC--ChhhhhhCChhhCCHHHH
Confidence 9999999999986 999999975321000 000 0001111233445554 666667788889999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CcEEEEEecCcccccc-CCEEEEEeCCeEEEecChh
Q 000406 818 QRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKIS-V-GRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHR 894 (1560)
Q Consensus 818 QRialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~ 894 (1560)
||++|||||+.+|++|||||||++||+.+.+.+.+.|.++. + |+|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 160 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~ 239 (255)
T PRK11300 160 RRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPE 239 (255)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCCHH
Confidence 99999999999999999999999999999999999998874 3 7899999999999866 9999999999999999988
Q ss_pred hHhh
Q 000406 895 QLLE 898 (1560)
Q Consensus 895 ~l~~ 898 (1560)
++..
T Consensus 240 ~~~~ 243 (255)
T PRK11300 240 EIRN 243 (255)
T ss_pred HHhh
Confidence 8754
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=364.86 Aligned_cols=217 Identities=29% Similarity=0.461 Sum_probs=180.0
Q ss_pred cEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCC-----CCccEEEECCeecCC--ccH
Q 000406 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYD-----PTKGLITLDGHDLKS--LQV 744 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~-----~~~G~I~i~g~~i~~--~~~ 744 (1560)
.|+++|++++|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++.. .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~ 80 (251)
T PRK14251 4 IISAKDVHLSYGN---YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL 80 (251)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence 4899999999963 459999999999999999999999999999999999997 479999999999854 334
Q ss_pred HHHhccEEEEecCCcCccccHHHHHhcCCCC--CC-HHHHHHHHHHhhhHHHHHhCCCCC----CcccCCCCCCCChHHH
Q 000406 745 KWLRTQIGMVGQEPILFATSILENVLMGKEN--AT-MKEAVAACKAASAHSFISELPLGY----DTQVGDRGTQLSGGQK 817 (1560)
Q Consensus 745 ~~lr~~i~~v~Q~~~lf~~Tv~eNi~~g~~~--~~-~~~~~~~~~~~~~~~~i~~l~~gl----~t~~~~~g~~LSgGQr 817 (1560)
..+++.++|++|++.+|+.|++||+.++... .. .+...+. +.+.++.+ |+ ....+..+.+||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~~~~~LS~Gq~ 153 (251)
T PRK14251 81 VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQR-----VEESLKQA--AIWKETKDNLDRNAQAFSGGQQ 153 (251)
T ss_pred HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHH-----HHHHHHHc--CCCcchHHHhccChhhCCHHHH
Confidence 5667889999999999989999999875321 11 1111111 11222222 22 1234566789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhH
Q 000406 818 QRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQL 896 (1560)
Q Consensus 818 QRialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l 896 (1560)
||++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 154 qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14251 154 QRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEM 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988667999999999999866 999999999999999999887
Q ss_pred hh
Q 000406 897 LE 898 (1560)
Q Consensus 897 ~~ 898 (1560)
..
T Consensus 234 ~~ 235 (251)
T PRK14251 234 FI 235 (251)
T ss_pred Hh
Confidence 64
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=363.03 Aligned_cols=204 Identities=29% Similarity=0.457 Sum_probs=174.4
Q ss_pred cEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHHHhccE
Q 000406 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQI 751 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 751 (1560)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+++.+
T Consensus 12 ~l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i 83 (257)
T PRK11247 12 PLLLNAVSKRYGE---RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDT 83 (257)
T ss_pred cEEEEEEEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCce
Confidence 4999999999963 45899999999999999999999999999999999999999999999998753 456789
Q ss_pred EEEecCCcCcc-ccHHHHHhcCCCCCCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHHhccCC
Q 000406 752 GMVGQEPILFA-TSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDP 830 (1560)
Q Consensus 752 ~~v~Q~~~lf~-~Tv~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARAl~~~p 830 (1560)
+|++|++.+|+ .|++||+.++......+++. +.++.+ |+....+..+.+||||||||++|||||+++|
T Consensus 84 ~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~---------~~l~~~--gl~~~~~~~~~~LSgGqkqrl~laraL~~~p 152 (257)
T PRK11247 84 RLMFQDARLLPWKKVIDNVGLGLKGQWRDAAL---------QALAAV--GLADRANEWPAALSGGQKQRVALARALIHRP 152 (257)
T ss_pred EEEecCccCCCCCcHHHHHHhcccchHHHHHH---------HHHHHc--CChhHhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 99999999987 59999998864221112222 233333 4555556777899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChh
Q 000406 831 RILLLDEPTSALDSESESIVQQAIDKIS--VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHR 894 (1560)
Q Consensus 831 ~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~ 894 (1560)
++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|++++.|+.+
T Consensus 153 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 153 GLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 9999999999999999999999998863 47999999999999865 9999999999999987754
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=358.96 Aligned_cols=214 Identities=24% Similarity=0.379 Sum_probs=170.6
Q ss_pred EEEEEEEEEcCCCC-CccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccC---CCccEEEECCEecCCCCHHHHh
Q 000406 1314 IELKMVTFTYPSRP-EVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYD---PNQGKVMIEGVDLREINVKWLR 1389 (1560)
Q Consensus 1314 I~~~nVsf~Y~~~~-~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~---p~~G~I~IdGvdi~~i~l~~LR 1389 (1560)
++|+||+++|+... .+++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.++|.++. ...+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 67999999997542 3579999999999999999999999999999999999999 99999999999875 34678
Q ss_pred hceEEEcCCCCCCCc-cHHHHHhcCCCCCCHHHHHHHHHHHhHHH-HHHhCCCCccccccCCCCCCChHHHHHHHHHHHH
Q 000406 1390 KQTALVGQEPALFAG-TIRDNIALGNPKASWAEIEEAAEEAYIHK-FISSLPQGYETQVGESGVQLSGGQKQRIAIARAI 1467 (1560)
Q Consensus 1390 ~~I~~VpQdp~LF~g-TIreNL~~g~~~~sd~eI~~al~~a~l~~-~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLARAL 1467 (1560)
+.++|+||++.+|++ |++||+.++..........+..+....++ .+..+ +++.........||||||||++|||||
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~laral 158 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDL--ALTRIGGNLVKGISGGERRRVSIAVQL 158 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhh--cchhhhcccccCcCHHHHHHHHHHHHH
Confidence 899999999999987 99999986421100000000111111111 22221 333333445568999999999999999
Q ss_pred ccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCceEEEEecCh-HHH-hhcCEEEEEeCCEEEEec
Q 000406 1468 LKGSRVLLLDEASSALDLESEKHVQDALRKVS-KRATTIVVAHRL-STI-REANMIAVVRDGAVVEYG 1532 (1560)
Q Consensus 1468 Lr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~-~~~TvI~IAHRl-sti-~~aDrIlVLd~G~IvE~G 1532 (1560)
+++|+||||||||++||+.+.+.+.+.|++.. +++|+|+|||++ ..+ ..||+|++|++|++++.|
T Consensus 159 ~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 159 LWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999864 468999999998 455 559999999999999876
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=402.25 Aligned_cols=110 Identities=26% Similarity=0.483 Sum_probs=95.4
Q ss_pred Cccc-cccCCCCCCChHHHHHHHHHHHHccCC---CEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCceEEEEecChHHHh
Q 000406 1441 GYET-QVGESGVQLSGGQKQRIAIARAILKGS---RVLLLDEASSALDLESEKHVQDALRKVS-KRATTIVVAHRLSTIR 1515 (1560)
Q Consensus 1441 Gldt-~Vge~G~~LSGGQrQRLaLARALLr~p---~ILILDEaTSaLD~~Te~~I~~~L~~~~-~~~TvI~IAHRlsti~ 1515 (1560)
|++. .++.....|||||||||+|||+|+++| +|+||||||++||+.+.+.+.+.|+++. ++.|||+|+|+++.+.
T Consensus 818 gL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~ 897 (943)
T PRK00349 818 GLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIK 897 (943)
T ss_pred CCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence 4543 356777889999999999999999999 9999999999999999999999999874 5789999999999999
Q ss_pred hcCEEEEE------eCCEEEEecCHHHHHhhccChHHHHHHH
Q 000406 1516 EANMIAVV------RDGAVVEYGSHETLLASHLNGVYASLVR 1551 (1560)
Q Consensus 1516 ~aDrIlVL------d~G~IvE~Gt~~eLl~~~~~g~y~~l~~ 1551 (1560)
.||+|++| ++|+|++.|+++++.++ .++.-.+..+
T Consensus 898 ~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~~-~~s~t~~~l~ 938 (943)
T PRK00349 898 TADWIIDLGPEGGDGGGEIVATGTPEEVAKV-EASYTGRYLK 938 (943)
T ss_pred hCCEEEEecCCcCCCCCEEEEeCCHHHHHhC-cccHHHHHHH
Confidence 99999999 79999999999999973 3444444443
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-38 Score=366.97 Aligned_cols=219 Identities=31% Similarity=0.493 Sum_probs=182.9
Q ss_pred cccEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCC-----CccEEEECCeecCC--c
Q 000406 670 SGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDP-----TKGLITLDGHDLKS--L 742 (1560)
Q Consensus 670 ~g~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~-----~~G~I~i~g~~i~~--~ 742 (1560)
.+.|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++.. .
T Consensus 23 ~~~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~ 99 (272)
T PRK14236 23 QTALEVRNLNLFYGD---KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99 (272)
T ss_pred CcEEEEEEEEEEECC---eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccccc
Confidence 346999999999963 3589999999999999999999999999999999999874 89999999999864 3
Q ss_pred cHHHHhccEEEEecCCcCccccHHHHHhcCCCC--C-CH----HHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChH
Q 000406 743 QVKWLRTQIGMVGQEPILFATSILENVLMGKEN--A-TM----KEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGG 815 (1560)
Q Consensus 743 ~~~~lr~~i~~v~Q~~~lf~~Tv~eNi~~g~~~--~-~~----~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgG 815 (1560)
+...+|+.++|++|++.+|+.|++||+.++... . .. +++.++++..++.+. +.+..+..+.+||||
T Consensus 100 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LS~G 172 (272)
T PRK14236 100 DVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDE-------VKDRLHENAFGLSGG 172 (272)
T ss_pred CHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChh-------HHHHhhCCcccCCHH
Confidence 455678899999999999988999999875321 1 11 112222222222211 123456777899999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChh
Q 000406 816 QKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHR 894 (1560)
Q Consensus 816 QrQRialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~ 894 (1560)
||||++|||||+++|+||||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 173 q~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 252 (272)
T PRK14236 173 QQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTD 252 (272)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHH
Confidence 999999999999999999999999999999999999999988668999999999999865 9999999999999999998
Q ss_pred hHhh
Q 000406 895 QLLE 898 (1560)
Q Consensus 895 ~l~~ 898 (1560)
++..
T Consensus 253 ~~~~ 256 (272)
T PRK14236 253 TLFT 256 (272)
T ss_pred HHhc
Confidence 8764
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-38 Score=364.87 Aligned_cols=216 Identities=27% Similarity=0.442 Sum_probs=182.8
Q ss_pred EEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHHHhccEE
Q 000406 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIG 752 (1560)
Q Consensus 673 i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~ 752 (1560)
|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (255)
T PRK11231 3 LRTENLTVGYGT---KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLA 79 (255)
T ss_pred EEEEeEEEEECC---EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheE
Confidence 789999999963 46999999999999999999999999999999999999999999999999988777777788899
Q ss_pred EEecCCcCccc-cHHHHHhcCCCCC----C--HHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHH
Q 000406 753 MVGQEPILFAT-SILENVLMGKENA----T--MKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARA 825 (1560)
Q Consensus 753 ~v~Q~~~lf~~-Tv~eNi~~g~~~~----~--~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARA 825 (1560)
|++|++.++.+ |+.||+.++.... . .++.. ..+.+.++.+ |++......+..||||||||++||||
T Consensus 80 ~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~lara 152 (255)
T PRK11231 80 LLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDN-----ARVNQAMEQT--RINHLADRRLTDLSGGQRQRAFLAMV 152 (255)
T ss_pred EecccCCCCCCccHHHHHHhccchhhhhccCCCHHHH-----HHHHHHHHHc--CCHHHHcCCcccCCHHHHHHHHHHHH
Confidence 99999988876 9999998863210 0 01100 1111223322 44444566778999999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhHhh
Q 000406 826 MIKDPRILLLDEPTSALDSESESIVQQAIDKIS-VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLE 898 (1560)
Q Consensus 826 l~~~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l~~ 898 (1560)
++.+|++|||||||++||+.+...+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 153 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 153 LAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227 (255)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC
Confidence 999999999999999999999999999998874 48999999999999875 99999999999999999988764
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-38 Score=362.17 Aligned_cols=217 Identities=29% Similarity=0.520 Sum_probs=182.3
Q ss_pred cEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCC------ccHH
Q 000406 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKS------LQVK 745 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~------~~~~ 745 (1560)
.|+++|+++.|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .+..
T Consensus 2 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T PRK11124 2 SIQLNGINCFYGA---HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred EEEEEeeEEEECC---eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHH
Confidence 3789999999963 359999999999999999999999999999999999999999999999998731 2334
Q ss_pred HHhccEEEEecCCcCccc-cHHHHHhcCCC---CCCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHH
Q 000406 746 WLRTQIGMVGQEPILFAT-SILENVLMGKE---NATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIA 821 (1560)
Q Consensus 746 ~lr~~i~~v~Q~~~lf~~-Tv~eNi~~g~~---~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRia 821 (1560)
.+|++|+|++|++.+|.+ |++|||.++.. ....++.. ..+.++++.+ |++..++....+||||||||++
T Consensus 79 ~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~ 151 (242)
T PRK11124 79 ELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQAL-----ARAEKLLERL--RLKPYADRFPLHLSGGQQQRVA 151 (242)
T ss_pred HHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CChhhhhCChhhCCHHHHHHHH
Confidence 667889999999999975 99999974311 11111111 1233445554 5666677778899999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhHhh
Q 000406 822 LARAMIKDPRILLLDEPTSALDSESESIVQQAIDKIS-VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLE 898 (1560)
Q Consensus 822 lARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l~~ 898 (1560)
|||||+.+|+||||||||++||+.+...+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 152 laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 230 (242)
T PRK11124 152 IARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTQ 230 (242)
T ss_pred HHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhcC
Confidence 9999999999999999999999999999999999874 48999999999999865 99999999999999999887643
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-38 Score=367.18 Aligned_cols=217 Identities=28% Similarity=0.419 Sum_probs=179.6
Q ss_pred EEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecC--CccHHHHhcc
Q 000406 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLK--SLQVKWLRTQ 750 (1560)
Q Consensus 673 i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~--~~~~~~lr~~ 750 (1560)
|+++||+++|++ ..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++. ..+...+|++
T Consensus 2 l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (271)
T PRK13638 2 LATSDLWFRYQD---EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ 78 (271)
T ss_pred eEEEEEEEEcCC---cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhh
Confidence 789999999963 45899999999999999999999999999999999999999999999999985 2344567788
Q ss_pred EEEEecCCc--CccccHHHHHhcCCCC--CCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHHh
Q 000406 751 IGMVGQEPI--LFATSILENVLMGKEN--ATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAM 826 (1560)
Q Consensus 751 i~~v~Q~~~--lf~~Tv~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARAl 826 (1560)
|+||+|++. ++..|+.+|+.++... ...++..+. +.+.++.+ |+.........+||||||||++|||||
T Consensus 79 i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgG~~qrl~laraL 151 (271)
T PRK13638 79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRR-----VDEALTLV--DAQHFRHQPIQCLSHGQKKRVAIAGAL 151 (271)
T ss_pred eEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCHhHhcCCchhCCHHHHHHHHHHHHH
Confidence 999999985 5667899999874211 122222111 12223333 333334556779999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhHhhh
Q 000406 827 IKDPRILLLDEPTSALDSESESIVQQAIDKIS-VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLER 899 (1560)
Q Consensus 827 ~~~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l~~~ 899 (1560)
+.+|+||||||||++||+.+...+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 152 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 152 VLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999998874 58999999999999865 999999999999999999887653
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=356.65 Aligned_cols=205 Identities=35% Similarity=0.591 Sum_probs=171.8
Q ss_pred EEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHHHhccEEE
Q 000406 674 EFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIGM 753 (1560)
Q Consensus 674 ~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~ 753 (1560)
+++|++++|++. ...+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...++++|+|
T Consensus 1 ~~~~l~~~~~~~-~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (211)
T cd03225 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGL 79 (211)
T ss_pred CceeEEEecCCC-CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceE
Confidence 468999999642 2458999999999999999999999999999999999999999999999999987777777889999
Q ss_pred EecCCc--CccccHHHHHhcCCCC--CCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHHhccC
Q 000406 754 VGQEPI--LFATSILENVLMGKEN--ATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKD 829 (1560)
Q Consensus 754 v~Q~~~--lf~~Tv~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARAl~~~ 829 (1560)
++|++. ++..|++||+.++... ....+..+ .+.+.++.+ |++..+...+.+||||||||++|||||+.+
T Consensus 80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~laral~~~ 152 (211)
T cd03225 80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEE-----RVEEALELV--GLEGLRDRSPFTLSGGQKQRVAIAGVLAMD 152 (211)
T ss_pred EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CcHhhhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 999984 5667999999875321 11111111 122334443 455556677789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCcccccc-CCEEEEEeCCe
Q 000406 830 PRILLLDEPTSALDSESESIVQQAIDKIS-VGRTTIVIAHRLATVKN-ANTIVVLDQGS 886 (1560)
Q Consensus 830 p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~D~i~vl~~G~ 886 (1560)
|++|||||||++||+.++..+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|+
T Consensus 153 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 153 PDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999999998874 48999999999999987 99999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=356.79 Aligned_cols=206 Identities=34% Similarity=0.540 Sum_probs=171.7
Q ss_pred EEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccH---HHHhc
Q 000406 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQV---KWLRT 749 (1560)
Q Consensus 673 i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~---~~lr~ 749 (1560)
|+++|++++|+.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ...|+
T Consensus 1 l~~~~l~~~~~~~--~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (214)
T cd03292 1 IEFINVTKTYPNG--TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78 (214)
T ss_pred CEEEEEEEEeCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence 4789999999632 358999999999999999999999999999999999999999999999999877653 34677
Q ss_pred cEEEEecCCcCccc-cHHHHHhcCCCC--CCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHHh
Q 000406 750 QIGMVGQEPILFAT-SILENVLMGKEN--ATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAM 826 (1560)
Q Consensus 750 ~i~~v~Q~~~lf~~-Tv~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARAl 826 (1560)
.++||+|++.+|+. |++||+.++... ...++..+ .+.+.++.+ |++........+||||||||++|||||
T Consensus 79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral 151 (214)
T cd03292 79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRK-----RVPAALELV--GLSHKHRALPAELSGGEQQRVAIARAI 151 (214)
T ss_pred heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCHHHhhCChhhcCHHHHHHHHHHHHH
Confidence 89999999999985 999999875321 11221111 112233333 454455566779999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCcccccc-CCEEEEEeCCeE
Q 000406 827 IKDPRILLLDEPTSALDSESESIVQQAIDKIS-VGRTTIVIAHRLATVKN-ANTIVVLDQGSV 887 (1560)
Q Consensus 827 ~~~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~D~i~vl~~G~i 887 (1560)
+.+|+||||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++
T Consensus 152 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 152 VNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999873 58999999999999976 999999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=370.24 Aligned_cols=213 Identities=28% Similarity=0.497 Sum_probs=182.0
Q ss_pred cEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHHHhccE
Q 000406 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQI 751 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 751 (1560)
.|+++|++++|+. ...+|+||||+|++|+++||+||||||||||+++|+|++.|++|+|.++|.+...- ....+++|
T Consensus 4 ~i~~~~l~k~~~~--~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~i 80 (293)
T COG1131 4 VIEVRNLTKKYGG--DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRI 80 (293)
T ss_pred eeeecceEEEeCC--CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhhe
Confidence 4788999999973 24699999999999999999999999999999999999999999999999998765 66778899
Q ss_pred EEEecCCcCccc-cHHHHHhcCCCCC--C----HHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHH
Q 000406 752 GMVGQEPILFAT-SILENVLMGKENA--T----MKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALAR 824 (1560)
Q Consensus 752 ~~v~Q~~~lf~~-Tv~eNi~~g~~~~--~----~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialAR 824 (1560)
|||||+|.+++. |++||+.|..... . .+++.+. ++.+ |++...+....+||+|||||++||+
T Consensus 81 gy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~---------l~~~--~L~~~~~~~~~~lS~G~kqrl~ia~ 149 (293)
T COG1131 81 GYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEEL---------LELF--GLEDKANKKVRTLSGGMKQRLSIAL 149 (293)
T ss_pred EEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHH---------HHHc--CCchhhCcchhhcCHHHHHHHHHHH
Confidence 999999998876 9999998743211 1 1223333 3333 3333225557789999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-C-cEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhHhh
Q 000406 825 AMIKDPRILLLDEPTSALDSESESIVQQAIDKISV-G-RTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLE 898 (1560)
Q Consensus 825 Al~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~-~-~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l~~ 898 (1560)
||+.+|++|||||||++|||.++..+.+.|+++.+ | +||+++||.++.+.. ||+|++|++|+++..|+++++..
T Consensus 150 aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~ 226 (293)
T COG1131 150 ALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKE 226 (293)
T ss_pred HHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 99999999999999999999999999999999854 5 799999999999987 99999999999999999988754
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-38 Score=362.63 Aligned_cols=219 Identities=28% Similarity=0.484 Sum_probs=180.8
Q ss_pred cccEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCC--C---CccEEEECCeecCCc--
Q 000406 670 SGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYD--P---TKGLITLDGHDLKSL-- 742 (1560)
Q Consensus 670 ~g~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~--~---~~G~I~i~g~~i~~~-- 742 (1560)
++.|+++|++++|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.++|.++...
T Consensus 2 ~~~l~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~ 78 (252)
T PRK14256 2 NNKVKLEQLNVHFGK---NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGV 78 (252)
T ss_pred CcEEEEEEEEEEeCC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccC
Confidence 357999999999963 459999999999999999999999999999999999986 4 689999999998643
Q ss_pred cHHHHhccEEEEecCCcCcc-ccHHHHHhcCCCC---CCHHH----HHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCCh
Q 000406 743 QVKWLRTQIGMVGQEPILFA-TSILENVLMGKEN---ATMKE----AVAACKAASAHSFISELPLGYDTQVGDRGTQLSG 814 (1560)
Q Consensus 743 ~~~~lr~~i~~v~Q~~~lf~-~Tv~eNi~~g~~~---~~~~~----~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSg 814 (1560)
....+|+.|+||||++.+|. .|++||+.++... ....+ +.++++..++.++ +....+..+.+|||
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LS~ 151 (252)
T PRK14256 79 DPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDE-------VKDRLKSNAMELSG 151 (252)
T ss_pred ChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchh-------hhHHhhCCcCcCCH
Confidence 34467888999999999998 5999999865311 11111 1222222222111 11234556789999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCcccccc-CCEEEEEeCCeEEEecCh
Q 000406 815 GQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNH 893 (1560)
Q Consensus 815 GQrQRialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~ 893 (1560)
|||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||++++|++|++++.|++
T Consensus 152 G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~ 231 (252)
T PRK14256 152 GQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGET 231 (252)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999998777899999999999865 999999999999999999
Q ss_pred hhHhh
Q 000406 894 RQLLE 898 (1560)
Q Consensus 894 ~~l~~ 898 (1560)
+++..
T Consensus 232 ~~~~~ 236 (252)
T PRK14256 232 KKIFT 236 (252)
T ss_pred HHHHh
Confidence 88764
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=366.08 Aligned_cols=218 Identities=25% Similarity=0.411 Sum_probs=184.2
Q ss_pred ccEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHHHhcc
Q 000406 671 GKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQ 750 (1560)
Q Consensus 671 g~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~ 750 (1560)
..|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++.
T Consensus 6 ~~l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (265)
T PRK10253 6 ARLRGEQLTLGYGK---YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARR 82 (265)
T ss_pred cEEEEEEEEEEECC---EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhh
Confidence 46999999999973 459999999999999999999999999999999999999999999999999987777777788
Q ss_pred EEEEecCCcCcc-ccHHHHHhcCCCCC------CHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHH
Q 000406 751 IGMVGQEPILFA-TSILENVLMGKENA------TMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALA 823 (1560)
Q Consensus 751 i~~v~Q~~~lf~-~Tv~eNi~~g~~~~------~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialA 823 (1560)
|+||+|++.+|. .|++||+.++.... ..+.. ...+.+.++.+ |++......+.+||||||||++||
T Consensus 83 i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~Gq~qrv~la 155 (265)
T PRK10253 83 IGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKED-----EEAVTKAMQAT--GITHLADQSVDTLSGGQRQRAWIA 155 (265)
T ss_pred eEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHH-----HHHHHHHHHHc--CCHHHhcCCcccCChHHHHHHHHH
Confidence 999999998876 59999998753110 00110 11112233332 444455667789999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhHhh
Q 000406 824 RAMIKDPRILLLDEPTSALDSESESIVQQAIDKIS--VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLE 898 (1560)
Q Consensus 824 RAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l~~ 898 (1560)
||++++|++|||||||++||+.+...+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 156 ral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 233 (265)
T PRK10253 156 MVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVT 233 (265)
T ss_pred HHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhh
Confidence 99999999999999999999999999999998874 38899999999998865 99999999999999999988764
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-38 Score=362.54 Aligned_cols=217 Identities=29% Similarity=0.450 Sum_probs=182.8
Q ss_pred cEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHHHhccE
Q 000406 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQI 751 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 751 (1560)
.|+++|++++|++ ..+|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 2 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i 78 (258)
T PRK13548 2 MLEARNLSVRLGG---RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRR 78 (258)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhhe
Confidence 3789999999973 4589999999999999999999999999999999999999999999999999877777777889
Q ss_pred EEEecCCcC-ccccHHHHHhcCCCCC--CHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHHhc-
Q 000406 752 GMVGQEPIL-FATSILENVLMGKENA--TMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMI- 827 (1560)
Q Consensus 752 ~~v~Q~~~l-f~~Tv~eNi~~g~~~~--~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARAl~- 827 (1560)
+|++|++.+ +..|++||+.++.... ..++..+ .+.+.++.+ |+.........+||||||||++|||||+
T Consensus 79 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGe~qrv~la~al~~ 151 (258)
T PRK13548 79 AVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDA-----LVAAALAQV--DLAHLAGRDYPQLSGGEQQRVQLARVLAQ 151 (258)
T ss_pred EEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHH-----HHHHHHHHc--CCHhHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 999999987 4569999998764211 1111111 112233333 4544556677899999999999999999
Q ss_pred -----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhHhh
Q 000406 828 -----KDPRILLLDEPTSALDSESESIVQQAIDKIS--VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLE 898 (1560)
Q Consensus 828 -----~~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l~~ 898 (1560)
.+|++|||||||++||+.+...+.+.|+++. +++|||++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 152 ~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (258)
T PRK13548 152 LWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVLT 230 (258)
T ss_pred ccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHHhC
Confidence 5999999999999999999999999999874 48999999999999875 99999999999999999988764
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-38 Score=354.62 Aligned_cols=208 Identities=29% Similarity=0.480 Sum_probs=173.1
Q ss_pred EEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHH---HHhc
Q 000406 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVK---WLRT 749 (1560)
Q Consensus 673 i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~---~lr~ 749 (1560)
|+++|++++|+. +..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++.. .+|+
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 2 IRFEHVSKAYLG--GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred EEEEeeEEEecC--CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence 789999999942 24689999999999999999999999999999999999999999999999999776543 3678
Q ss_pred cEEEEecCCcCc-cccHHHHHhcCCC--CCCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHHh
Q 000406 750 QIGMVGQEPILF-ATSILENVLMGKE--NATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAM 826 (1560)
Q Consensus 750 ~i~~v~Q~~~lf-~~Tv~eNi~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARAl 826 (1560)
.++|++|++.++ ..|++||+.++.. ....++..+.+ .+.++.+ |+.........+||||||||++|||||
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral 152 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRV-----SAALDKV--GLLDKAKNFPIQLSGGEQQRVGIARAV 152 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHH-----HHHHHHc--CChhhhhCCchhCCHHHHHHHHHHHHH
Confidence 899999999875 4699999987531 12222222111 1233333 444445666789999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCcccccc-CCEEEEEeCCeEEE
Q 000406 827 IKDPRILLLDEPTSALDSESESIVQQAIDKIS-VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVE 889 (1560)
Q Consensus 827 ~~~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~ 889 (1560)
+.+|++|||||||++||+.+.+.+.+.|+++. ++.|+|+|||+++.+.. ||+|++|++|+++.
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 153 VNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 99999999999999999999999999999874 47999999999999976 99999999999864
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=355.61 Aligned_cols=205 Identities=33% Similarity=0.560 Sum_probs=170.0
Q ss_pred EEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHH---HHhc
Q 000406 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVK---WLRT 749 (1560)
Q Consensus 673 i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~---~lr~ 749 (1560)
|+++|++++|+. +..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++.. .+++
T Consensus 2 l~~~~l~~~~~~--~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 2 IEFHNVSKAYPG--GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred EEEEeeeEEeCC--CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 789999999952 24699999999999999999999999999999999999999999999999999876532 4677
Q ss_pred cEEEEecCCcCcc-ccHHHHHhcCCCC--CCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHHh
Q 000406 750 QIGMVGQEPILFA-TSILENVLMGKEN--ATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAM 826 (1560)
Q Consensus 750 ~i~~v~Q~~~lf~-~Tv~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARAl 826 (1560)
.++|++|++.+|. .|++||+.++... ...+...+ .+.+.++.+ |+.........+||||||||++|||||
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al 152 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQR-----RVGAALRQV--GLEHKADAFPEQLSGGEQQRVAIARAI 152 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 8999999999986 5999999875211 11111111 112233333 343344555678999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCcccccc-CCEEEEEeCCe
Q 000406 827 IKDPRILLLDEPTSALDSESESIVQQAIDKIS-VGRTTIVIAHRLATVKN-ANTIVVLDQGS 886 (1560)
Q Consensus 827 ~~~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~D~i~vl~~G~ 886 (1560)
+.+|++|||||||++||+.++..+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|+
T Consensus 153 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 153 VNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred hCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 99999999999999999999999999999874 58999999999999876 99999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-38 Score=363.89 Aligned_cols=217 Identities=27% Similarity=0.465 Sum_probs=182.1
Q ss_pred cEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCC-----CCccEEEECCeecCC--ccH
Q 000406 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYD-----PTKGLITLDGHDLKS--LQV 744 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~-----~~~G~I~i~g~~i~~--~~~ 744 (1560)
.|+++||+++|+. .++|+|+||+|++||+++|+|+||||||||+++|+|++. |++|+|.++|.++.. .+.
T Consensus 10 ~l~i~~v~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 86 (264)
T PRK14243 10 VLRTENLNVYYGS---FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86 (264)
T ss_pred EEEEeeeEEEECC---EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence 4899999999963 358999999999999999999999999999999999986 479999999998853 345
Q ss_pred HHHhccEEEEecCCcCccccHHHHHhcCCCCC--C---HHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHH
Q 000406 745 KWLRTQIGMVGQEPILFATSILENVLMGKENA--T---MKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQR 819 (1560)
Q Consensus 745 ~~lr~~i~~v~Q~~~lf~~Tv~eNi~~g~~~~--~---~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQR 819 (1560)
..++++|+||+|++.+|+.|+.||+.++.... . .+++.++++..++.+++ ....+..+.+||||||||
T Consensus 87 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LSgGq~qr 159 (264)
T PRK14243 87 VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEV-------KDKLKQSGLSLSGGQQQR 159 (264)
T ss_pred HHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhH-------HHHhcCCcccCCHHHHHH
Confidence 56788899999999999889999998764211 1 11222233333333222 223456678999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCcccccc-CCEEEEEe---------CCeEEE
Q 000406 820 IALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKN-ANTIVVLD---------QGSVVE 889 (1560)
Q Consensus 820 ialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~D~i~vl~---------~G~iv~ 889 (1560)
++|||||+++|+||||||||++||+.+...+.+.|+++.+++|||++||+++.+.. ||+|++|+ +|++++
T Consensus 160 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~ 239 (264)
T PRK14243 160 LCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVE 239 (264)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 99999999999999999999999999999999999988767899999999999876 99999998 899999
Q ss_pred ecChhhHhh
Q 000406 890 IGNHRQLLE 898 (1560)
Q Consensus 890 ~G~~~~l~~ 898 (1560)
.|+++++..
T Consensus 240 ~~~~~~~~~ 248 (264)
T PRK14243 240 FDRTEKIFN 248 (264)
T ss_pred eCCHHHHHh
Confidence 999999865
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=374.76 Aligned_cols=227 Identities=23% Similarity=0.392 Sum_probs=181.0
Q ss_pred cEEEEEEEEEcCCCCC-ccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCC----CCccEEEECCeecCCccHHH
Q 000406 672 KIEFKGVTFAYPSRPE-TVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYD----PTKGLITLDGHDLKSLQVKW 746 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~~~-~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~----~~~G~I~i~g~~i~~~~~~~ 746 (1560)
-|+++|+++.|+.... ..+|+||||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++..++.+.
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 3799999999975322 359999999999999999999999999999999999997 48999999999998887655
Q ss_pred Hh----ccEEEEecCCc--Cccc-cHHHHHhcCCC---CCCHHHHHHHHHHhhhHHHHHhCCCCCC---cccCCCCCCCC
Q 000406 747 LR----TQIGMVGQEPI--LFAT-SILENVLMGKE---NATMKEAVAACKAASAHSFISELPLGYD---TQVGDRGTQLS 813 (1560)
Q Consensus 747 lr----~~i~~v~Q~~~--lf~~-Tv~eNi~~g~~---~~~~~~~~~~~~~~~~~~~i~~l~~gl~---t~~~~~g~~LS 813 (1560)
++ +.|+||||+|. +.+. |+.+++..... ....++.. ..+.+.++.+ |++ ..++..+.+||
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~-----~~~~~~L~~~--gL~~~~~~l~~~p~~LS 155 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRR-----QRAIDLLNQV--GIPDPASRLDVYPHQLS 155 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHC--CCCChHHHHhCCchhCC
Confidence 43 36999999994 4443 77666543210 11111111 1122334443 342 34567788999
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCcccccc-CCEEEEEeCCeEEEe
Q 000406 814 GGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKIS--VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEI 890 (1560)
Q Consensus 814 gGQrQRialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~ 890 (1560)
|||||||+|||||+.+|+|||+||||++||+.++..+.+.|+++. .|.|+|+|||+++.+.. ||+|+||++|+|+|.
T Consensus 156 gGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~ 235 (326)
T PRK11022 156 GGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVET 235 (326)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999999999874 48999999999999865 999999999999999
Q ss_pred cChhhHhhhc-chHHH
Q 000406 891 GNHRQLLERG-GAYHD 905 (1560)
Q Consensus 891 G~~~~l~~~~-~~~~~ 905 (1560)
|++++++++. ..|.+
T Consensus 236 g~~~~~~~~p~hpyt~ 251 (326)
T PRK11022 236 GKAHDIFRAPRHPYTQ 251 (326)
T ss_pred CCHHHHhhCCCChHHH
Confidence 9999998643 34443
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=355.68 Aligned_cols=205 Identities=25% Similarity=0.477 Sum_probs=173.2
Q ss_pred EEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHHHhccEE
Q 000406 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIG 752 (1560)
Q Consensus 673 i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~ 752 (1560)
|+++|+++.|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.. ..+++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~ 73 (210)
T cd03269 1 LEVENVTKRFGR---VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIG 73 (210)
T ss_pred CEEEEEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEE
Confidence 478999999963 458999999999999999999999999999999999999999999999987753 4567899
Q ss_pred EEecCCcCccc-cHHHHHhcCCCC--CCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHHhccC
Q 000406 753 MVGQEPILFAT-SILENVLMGKEN--ATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKD 829 (1560)
Q Consensus 753 ~v~Q~~~lf~~-Tv~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARAl~~~ 829 (1560)
|++|++.++.. |++||+.++... ....+. ...+.++++.+ |++........+||||||||++|||||+.+
T Consensus 74 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 146 (210)
T cd03269 74 YLPEERGLYPKMKVIDQLVYLAQLKGLKKEEA-----RRRIDEWLERL--ELSEYANKRVEELSKGNQQKVQFIAAVIHD 146 (210)
T ss_pred EeccCCcCCcCCcHHHHHHHHHHHcCCChHHH-----HHHHHHHHHHc--CChHHHhCcHhhCCHHHHHHHHHHHHHhcC
Confidence 99999999875 999999874211 111111 11233445554 555666677789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCcccccc-CCEEEEEeCCeEEEec
Q 000406 830 PRILLLDEPTSALDSESESIVQQAIDKIS-VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIG 891 (1560)
Q Consensus 830 p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G 891 (1560)
|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 147 p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 147 PELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999999998874 57899999999999865 9999999999998754
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=364.38 Aligned_cols=216 Identities=32% Similarity=0.525 Sum_probs=179.2
Q ss_pred EEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCC-----CCccEEEECCeecCCcc--HH
Q 000406 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYD-----PTKGLITLDGHDLKSLQ--VK 745 (1560)
Q Consensus 673 i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~-----~~~G~I~i~g~~i~~~~--~~ 745 (1560)
-+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++...+ ..
T Consensus 6 ~~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 82 (251)
T PRK14244 6 ASVKNLNLWYGS---KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV 82 (251)
T ss_pred EEeeeEEEEECC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence 468999999963 468999999999999999999999999999999999986 47999999999886543 33
Q ss_pred HHhccEEEEecCCcCccccHHHHHhcCCC--CC--CHHHHHHHHHHhhhHHHHHhCCCCCC----cccCCCCCCCChHHH
Q 000406 746 WLRTQIGMVGQEPILFATSILENVLMGKE--NA--TMKEAVAACKAASAHSFISELPLGYD----TQVGDRGTQLSGGQK 817 (1560)
Q Consensus 746 ~lr~~i~~v~Q~~~lf~~Tv~eNi~~g~~--~~--~~~~~~~~~~~~~~~~~i~~l~~gl~----t~~~~~g~~LSgGQr 817 (1560)
.+|+.++||+|++.+|+.|++||+.++.. .. ..++..+ .+.+.++.+ |+. +.++..+.+||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~~~~LS~Gq~ 155 (251)
T PRK14244 83 LLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDE-----IVEKSLTSV--GLWEELGDRLKDSAFELSGGQQ 155 (251)
T ss_pred HHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHH-----HHHHHHHHc--CCCchhhhHhhcChhhCCHHHH
Confidence 56788999999999999999999987521 10 1111111 112223333 332 245567789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhH
Q 000406 818 QRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQL 896 (1560)
Q Consensus 818 QRialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l 896 (1560)
||++|||||+++|+||||||||++||+.+++.+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 235 (251)
T PRK14244 156 QRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEI 235 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999875 999999999999999999887
Q ss_pred hh
Q 000406 897 LE 898 (1560)
Q Consensus 897 ~~ 898 (1560)
..
T Consensus 236 ~~ 237 (251)
T PRK14244 236 FK 237 (251)
T ss_pred hc
Confidence 64
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-38 Score=367.61 Aligned_cols=213 Identities=30% Similarity=0.493 Sum_probs=186.7
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhhce
Q 000406 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQT 1392 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~~I 1392 (1560)
.++++||+.+|.. ...+|+||||+|++||.+|++||||||||||+++|+|++.|++|+|.++|.|...- ...+|++|
T Consensus 4 ~i~~~~l~k~~~~--~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~i 80 (293)
T COG1131 4 VIEVRNLTKKYGG--DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRI 80 (293)
T ss_pred eeeecceEEEeCC--CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhhe
Confidence 4789999999962 24699999999999999999999999999999999999999999999999998765 77889999
Q ss_pred EEEcCCCCCCCc-cHHHHHhcCC-----C-CCCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 000406 1393 ALVGQEPALFAG-TIRDNIALGN-----P-KASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIAR 1465 (1560)
Q Consensus 1393 ~~VpQdp~LF~g-TIreNL~~g~-----~-~~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLAR 1465 (1560)
|||||+|.+++. |++|||.+.. + ...++.+.+.++..+|.+.- +.+ ...||+|||||++||+
T Consensus 81 gy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-------~~~----~~~lS~G~kqrl~ia~ 149 (293)
T COG1131 81 GYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-------NKK----VRTLSGGMKQRLSIAL 149 (293)
T ss_pred EEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-------Ccc----hhhcCHHHHHHHHHHH
Confidence 999999998865 9999998742 1 12245677787777775411 223 3469999999999999
Q ss_pred HHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC-C-ceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHHHh
Q 000406 1466 AILKGSRVLLLDEASSALDLESEKHVQDALRKVSK-R-ATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLA 1539 (1560)
Q Consensus 1466 ALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~-~-~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eLl~ 1539 (1560)
||+.+|+||||||||++||+.+...+.+.|+++.+ + +|||++||.++.+.. ||+|++|++|+++..|+++++..
T Consensus 150 aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~ 226 (293)
T COG1131 150 ALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKE 226 (293)
T ss_pred HHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 99999999999999999999999999999999875 4 699999999999988 99999999999999999999875
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-38 Score=352.62 Aligned_cols=210 Identities=29% Similarity=0.454 Sum_probs=182.9
Q ss_pred EEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccH----HHHhc
Q 000406 674 EFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQV----KWLRT 749 (1560)
Q Consensus 674 ~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~----~~lr~ 749 (1560)
.+.|+.|+|+.. .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+. ...|+
T Consensus 2 ~~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 2 QVTNGYFSWGSG--LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred eeeeeEEecCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 578999999743 468999999999999999999999999999999999999999999999998865532 23567
Q ss_pred cEEEEecCCcCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHHhccC
Q 000406 750 QIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKD 829 (1560)
Q Consensus 750 ~i~~v~Q~~~lf~~Tv~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARAl~~~ 829 (1560)
.++|++|++.+|+.|++||+.++.+. ..++..++++..++.+.+..+|.|+++.++..+.+||||||||++||||++.+
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~ 158 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGSPF-NKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQN 158 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcCcC-CHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhC
Confidence 79999999999988999999986532 34445566677777778888899999988888999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHH--HHHHhc-CCcEEEEEecCccccccCCEEEEEeCCe
Q 000406 830 PRILLLDEPTSALDSESESIVQQ--AIDKIS-VGRTTIVIAHRLATVKNANTIVVLDQGS 886 (1560)
Q Consensus 830 p~illLDEpts~LD~~~~~~i~~--~l~~~~-~~~tvi~itH~l~~i~~~D~i~vl~~G~ 886 (1560)
|++|||||||++||+.+...+.+ .++.+. .+.|+|++||+++.+..||++++|++|+
T Consensus 159 p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 159 TNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred CCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 99999999999999999988887 555543 4799999999999988899999999884
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-38 Score=366.12 Aligned_cols=217 Identities=29% Similarity=0.514 Sum_probs=181.2
Q ss_pred EEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCC--ccHHHHhcc
Q 000406 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKS--LQVKWLRTQ 750 (1560)
Q Consensus 673 i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~--~~~~~lr~~ 750 (1560)
|+++||+++|+. ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. .+...+++.
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 2 LETRDLKYSYPD--GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred EEEEEEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence 789999999963 2358999999999999999999999999999999999999999999999999852 234457789
Q ss_pred EEEEecCC--cCccccHHHHHhcCCCC--CCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHHh
Q 000406 751 IGMVGQEP--ILFATSILENVLMGKEN--ATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAM 826 (1560)
Q Consensus 751 i~~v~Q~~--~lf~~Tv~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARAl 826 (1560)
|+|++|++ .++..|+.|||.++... ...++..+ .+.+.++.+ |+.......+.+||||||||++|||||
T Consensus 80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~LS~Gq~qrv~laral 152 (275)
T PRK13639 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEK-----RVKEALKAV--GMEGFENKPPHHLSGGQKKRVAIAGIL 152 (275)
T ss_pred eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHC--CCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 99999997 47788999999875321 12222111 112233333 444445566789999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhHhh
Q 000406 827 IKDPRILLLDEPTSALDSESESIVQQAIDKIS-VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLE 898 (1560)
Q Consensus 827 ~~~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l~~ 898 (1560)
+.+|++|||||||++||+.+...+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++++.|++++++.
T Consensus 153 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (275)
T PRK13639 153 AMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFS 226 (275)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999874 48999999999999875 99999999999999999998865
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-38 Score=362.64 Aligned_cols=229 Identities=28% Similarity=0.410 Sum_probs=186.0
Q ss_pred EEEEEEEEEcCCC------CCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCH--
Q 000406 1314 IELKMVTFTYPSR------PEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINV-- 1385 (1560)
Q Consensus 1314 I~~~nVsf~Y~~~------~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l-- 1385 (1560)
|+++||++.|+.. .++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++..++.
T Consensus 4 l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~ 83 (268)
T PRK10419 4 LNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQ 83 (268)
T ss_pred EEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhH
Confidence 8899999999631 02469999999999999999999999999999999999999999999999999988765
Q ss_pred -HHHhhceEEEcCCCC--CC-CccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCccc-cccCCCCCCChHHHHH
Q 000406 1386 -KWLRKQTALVGQEPA--LF-AGTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYET-QVGESGVQLSGGQKQR 1460 (1560)
Q Consensus 1386 -~~LR~~I~~VpQdp~--LF-~gTIreNL~~g~~~~sd~eI~~al~~a~l~~~I~~Lp~Gldt-~Vge~G~~LSGGQrQR 1460 (1560)
..+|+.++|+||++. ++ ..|+++|+.+...... .+........+.+.+..+ |+++ ........||||||||
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~~LS~Ge~qr 159 (268)
T PRK10419 84 RKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLL--SLDKAERLARASEMLRAV--DLDDSVLDKRPPQLSGGQLQR 159 (268)
T ss_pred HHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhc--cCCHHHHHHHHHHHHHHc--CCChhHhhCCCccCChHHHHH
Confidence 346889999999983 43 4699999864210000 001111222344555554 5653 4456677899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHH
Q 000406 1461 IAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSK--RATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETL 1537 (1560)
Q Consensus 1461 LaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~--~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eL 1537 (1560)
++|||||+.+|+||||||||++||+.+...+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 160 l~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~ 239 (268)
T PRK10419 160 VCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPVGDK 239 (268)
T ss_pred HHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCChhhc
Confidence 9999999999999999999999999999999999998753 7899999999999975 999999999999999999999
Q ss_pred HhhccChHHHH
Q 000406 1538 LASHLNGVYAS 1548 (1560)
Q Consensus 1538 l~~~~~g~y~~ 1548 (1560)
.. .+..|..
T Consensus 240 ~~--~~~~~~~ 248 (268)
T PRK10419 240 LT--FSSPAGR 248 (268)
T ss_pred cC--CCCHHHH
Confidence 86 3444433
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-38 Score=375.30 Aligned_cols=228 Identities=25% Similarity=0.427 Sum_probs=183.0
Q ss_pred cEEEEEEEEEcCCC-CCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCC---ccEEEECCeecCCccHHHH
Q 000406 672 KIEFKGVTFAYPSR-PETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPT---KGLITLDGHDLKSLQVKWL 747 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~-~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~---~G~I~i~g~~i~~~~~~~l 747 (1560)
.|+++|+++.|+.. ....+|+||||+|++||+++|+|+||||||||+++|+|+++|. +|+|.++|.++..++...+
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 58999999999642 2246899999999999999999999999999999999999996 9999999999988876654
Q ss_pred ---h-ccEEEEecCC--cCccc-cHHHHHhcCC---CCCCHHHHHHHHHHhhhHHHHHh--CCCCCCcccCCCCCCCChH
Q 000406 748 ---R-TQIGMVGQEP--ILFAT-SILENVLMGK---ENATMKEAVAACKAASAHSFISE--LPLGYDTQVGDRGTQLSGG 815 (1560)
Q Consensus 748 ---r-~~i~~v~Q~~--~lf~~-Tv~eNi~~g~---~~~~~~~~~~~~~~~~~~~~i~~--l~~gl~t~~~~~g~~LSgG 815 (1560)
| ++|+||+|+| .+++. |+.+|+.... ...+.++..+. +.+.++. ++.+. ..++..+.+||||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~-----~~~~L~~vgL~~~~-~~~~~~p~~LSgG 165 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEE-----SVRMLDAVKMPEAR-KRMKMYPHEFSGG 165 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHHcCCCChH-HHhcCCcccCCHH
Confidence 3 4799999998 45553 8888775321 11122222111 1122222 22221 2356788899999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecCcccccc-CCEEEEEeCCeEEEecC
Q 000406 816 QKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISV--GRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGN 892 (1560)
Q Consensus 816 QrQRialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~ 892 (1560)
||||++|||||+.+|++||+||||++||+.++..+.+.|+++.+ |.|+|+|||+++.+.. ||+|+||++|+|+|.|+
T Consensus 166 ~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~ 245 (330)
T PRK09473 166 MRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGN 245 (330)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999998743 8999999999999875 99999999999999999
Q ss_pred hhhHhhhc-chHHH
Q 000406 893 HRQLLERG-GAYHD 905 (1560)
Q Consensus 893 ~~~l~~~~-~~~~~ 905 (1560)
++++.+.. ..|.+
T Consensus 246 ~~~i~~~p~~pyt~ 259 (330)
T PRK09473 246 ARDVFYQPSHPYSI 259 (330)
T ss_pred HHHHHhCCCCHHHH
Confidence 99998642 34544
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-38 Score=365.30 Aligned_cols=220 Identities=27% Similarity=0.438 Sum_probs=182.1
Q ss_pred cEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCC-----CCccEEEECCeecCC--ccH
Q 000406 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYD-----PTKGLITLDGHDLKS--LQV 744 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~-----~~~G~I~i~g~~i~~--~~~ 744 (1560)
.|+++|++++|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 24 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 100 (271)
T PRK14238 24 VFDTQNLNLWYGE---DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100 (271)
T ss_pred EEEEeeeEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence 5999999999963 358999999999999999999999999999999999987 699999999999853 345
Q ss_pred HHHhccEEEEecCCcCccccHHHHHhcCCC--CCCHHHHHHHHHHhhhHHHHHhCC--CCCCcccCCCCCCCChHHHHHH
Q 000406 745 KWLRTQIGMVGQEPILFATSILENVLMGKE--NATMKEAVAACKAASAHSFISELP--LGYDTQVGDRGTQLSGGQKQRI 820 (1560)
Q Consensus 745 ~~lr~~i~~v~Q~~~lf~~Tv~eNi~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~--~gl~t~~~~~g~~LSgGQrQRi 820 (1560)
..+++.++|++|++.+|..|++||+.++.. ....++..+. .+.+.+..+. .++....+..+.+||||||||+
T Consensus 101 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv 176 (271)
T PRK14238 101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDE----IVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRL 176 (271)
T ss_pred HHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHH----HHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHH
Confidence 567788999999999998999999987531 1111111110 0111122211 1333445677889999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhHhh
Q 000406 821 ALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLE 898 (1560)
Q Consensus 821 alARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l~~ 898 (1560)
+|||||+.+|+||||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 177 ~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~ 255 (271)
T PRK14238 177 CIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIFS 255 (271)
T ss_pred HHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 9999999999999999999999999999999999988778999999999999865 99999999999999999988864
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-38 Score=361.16 Aligned_cols=202 Identities=26% Similarity=0.380 Sum_probs=170.5
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhhceE
Q 000406 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTA 1393 (1560)
Q Consensus 1314 I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~~I~ 1393 (1560)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++... ++.++
T Consensus 2 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~ 73 (255)
T PRK11248 2 LQISHLYADYGG---KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERG 73 (255)
T ss_pred EEEEEEEEEeCC---eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEE
Confidence 789999999963 3599999999999999999999999999999999999999999999999998642 24689
Q ss_pred EEcCCCCCCC-ccHHHHHhcCCC--CCCH----HHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 000406 1394 LVGQEPALFA-GTIRDNIALGNP--KASW----AEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARA 1466 (1560)
Q Consensus 1394 ~VpQdp~LF~-gTIreNL~~g~~--~~sd----~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLARA 1466 (1560)
|+||++.+|. .|++||+.++.. .... +++.++++..++.+ .......+||||||||++||||
T Consensus 74 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LSgGq~qrl~lara 142 (255)
T PRK11248 74 VVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEG-----------AEKRYIWQLSGGQRQRVGIARA 142 (255)
T ss_pred EEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChh-----------HhhCChhhCCHHHHHHHHHHHH
Confidence 9999999887 699999986421 1122 23444444444433 2334456899999999999999
Q ss_pred HccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc--CCceEEEEecChHHHhh-cCEEEEEe--CCEEEEecCH
Q 000406 1467 ILKGSRVLLLDEASSALDLESEKHVQDALRKVS--KRATTIVVAHRLSTIRE-ANMIAVVR--DGAVVEYGSH 1534 (1560)
Q Consensus 1467 LLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~--~~~TvI~IAHRlsti~~-aDrIlVLd--~G~IvE~Gt~ 1534 (1560)
|+.+|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+.. ||+|++|+ +|+|++.++.
T Consensus 143 l~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 143 LAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 999999999999999999999999999999863 37899999999999866 99999998 5999998754
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-38 Score=361.80 Aligned_cols=217 Identities=30% Similarity=0.516 Sum_probs=180.4
Q ss_pred cEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCC-----CccEEEECCeecCCc--cH
Q 000406 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDP-----TKGLITLDGHDLKSL--QV 744 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~-----~~G~I~i~g~~i~~~--~~ 744 (1560)
.|+++|+++.|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++... +.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~ 79 (250)
T PRK14262 3 IIEIENFSAYYGE---KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDV 79 (250)
T ss_pred eEEEEeeEEEeCC---ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhH
Confidence 4899999999963 4589999999999999999999999999999999999974 899999999988653 23
Q ss_pred HHHhccEEEEecCCcCccccHHHHHhcCCCC---CCHHH----HHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHH
Q 000406 745 KWLRTQIGMVGQEPILFATSILENVLMGKEN---ATMKE----AVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQK 817 (1560)
Q Consensus 745 ~~lr~~i~~v~Q~~~lf~~Tv~eNi~~g~~~---~~~~~----~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQr 817 (1560)
..+++.++|++|++.+|..|++||+.++... ...++ +.++++..++.+. ++...+..+.+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LS~Gq~ 152 (250)
T PRK14262 80 TEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDE-------VKSELNKPGTRLSGGQQ 152 (250)
T ss_pred HHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCch-------hHHHHhCChhhcCHHHH
Confidence 4567889999999999999999999875311 11111 2222222222111 12335667789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhH
Q 000406 818 QRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQL 896 (1560)
Q Consensus 818 QRialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l 896 (1560)
||++|||||+++|+||||||||++||+.++..+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 153 qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14262 153 QRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREI 232 (250)
T ss_pred HHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999999999999988768999999999998765 999999999999999999887
Q ss_pred hh
Q 000406 897 LE 898 (1560)
Q Consensus 897 ~~ 898 (1560)
.+
T Consensus 233 ~~ 234 (250)
T PRK14262 233 VE 234 (250)
T ss_pred Hh
Confidence 64
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-38 Score=355.90 Aligned_cols=212 Identities=29% Similarity=0.459 Sum_probs=174.9
Q ss_pred cEEEEEEEEEcCCCCC-ccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHH---H
Q 000406 672 KIEFKGVTFAYPSRPE-TVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKW---L 747 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~~~-~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~---l 747 (1560)
.|+++|++++|+.... .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+... .
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 5899999999974221 25899999999999999999999999999999999999999999999999998776543 2
Q ss_pred -hccEEEEecCCcCccc-cHHHHHhcCCC--CCCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHH
Q 000406 748 -RTQIGMVGQEPILFAT-SILENVLMGKE--NATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALA 823 (1560)
Q Consensus 748 -r~~i~~v~Q~~~lf~~-Tv~eNi~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialA 823 (1560)
++.++|++|++.++.. |++||+.++.. .....+. ...+.+.++.+ |+...+.....+||||||||++||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~Ge~qrl~la 158 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQS-----RNGAKALLEQL--GLGKRLDHLPAQLSGGEQQRVALA 158 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHH-----HHHHHHHHHHc--CCHhHhhCChhhCCHHHHHHHHHH
Confidence 3579999999999875 99999986421 1111111 11222334444 444445566779999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCccccccCCEEEEEeCCeEEEe
Q 000406 824 RAMIKDPRILLLDEPTSALDSESESIVQQAIDKIS--VGRTTIVIAHRLATVKNANTIVVLDQGSVVEI 890 (1560)
Q Consensus 824 RAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~~D~i~vl~~G~iv~~ 890 (1560)
|||+.+|++|||||||++||+.+...+.+.|+++. .++|||++||+++.+..||++++|++|++++.
T Consensus 159 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 159 RAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 99999999999999999999999999999998873 37899999999998877999999999999764
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-38 Score=361.76 Aligned_cols=219 Identities=29% Similarity=0.441 Sum_probs=181.5
Q ss_pred cEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCC-----CccEEEECCeecCCc--cH
Q 000406 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDP-----TKGLITLDGHDLKSL--QV 744 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~-----~~G~I~i~g~~i~~~--~~ 744 (1560)
.|+++|++++|++ +.+|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.++|+++... +.
T Consensus 6 ~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 82 (253)
T PRK14261 6 ILSTKNLNLWYGE---KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADV 82 (253)
T ss_pred eEEEeeeEEEECC---eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccch
Confidence 4899999999963 4589999999999999999999999999999999999763 489999999998765 44
Q ss_pred HHHhccEEEEecCCcCccccHHHHHhcCCCCC---CHHHHHHHHHHhhhHHHHHhC--CCCCCcccCCCCCCCChHHHHH
Q 000406 745 KWLRTQIGMVGQEPILFATSILENVLMGKENA---TMKEAVAACKAASAHSFISEL--PLGYDTQVGDRGTQLSGGQKQR 819 (1560)
Q Consensus 745 ~~lr~~i~~v~Q~~~lf~~Tv~eNi~~g~~~~---~~~~~~~~~~~~~~~~~i~~l--~~gl~t~~~~~g~~LSgGQrQR 819 (1560)
...++.|+|++|++.+|+.||+||+.++.... ...+..+. +.+.++.+ ..++.+..+..+.+||||||||
T Consensus 83 ~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qr 157 (253)
T PRK14261 83 VALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTI-----VEKSLKGAALWDEVKDRLHDSALSLSGGQQQR 157 (253)
T ss_pred hhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHH-----HHHHHHHhcCchhhHHHhhcChhhCCHHHHHH
Confidence 56678899999999999899999998763211 11111111 11122222 1123344667788999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhHhh
Q 000406 820 IALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLE 898 (1560)
Q Consensus 820 ialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l~~ 898 (1560)
++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 158 v~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 237 (253)
T PRK14261 158 LCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIFE 237 (253)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHHHh
Confidence 99999999999999999999999999999999999988667999999999999975 99999999999999999988754
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-38 Score=362.83 Aligned_cols=221 Identities=26% Similarity=0.436 Sum_probs=183.3
Q ss_pred EEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHHHhccEE
Q 000406 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIG 752 (1560)
Q Consensus 673 i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~ 752 (1560)
|+++|+++.|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 2 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (256)
T TIGR03873 2 LRLSRVSWSAGG---RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVA 78 (256)
T ss_pred ceEEeEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheE
Confidence 789999999963 46999999999999999999999999999999999999999999999999998887777788899
Q ss_pred EEecCCcCc-cccHHHHHhcCCCCCCH-HHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHHhccCC
Q 000406 753 MVGQEPILF-ATSILENVLMGKENATM-KEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDP 830 (1560)
Q Consensus 753 ~v~Q~~~lf-~~Tv~eNi~~g~~~~~~-~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARAl~~~p 830 (1560)
|++|++.++ ..||+||+.++...... ...........+.+.+..+ |+.......+.+||||||||++|||||+.+|
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~~p 156 (256)
T TIGR03873 79 LVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALART--ELSHLADRDMSTLSGGERQRVHVARALAQEP 156 (256)
T ss_pred EecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHc--CcHhhhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 999998654 56999999886321000 0000000111223344444 4444556677899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhHhh
Q 000406 831 RILLLDEPTSALDSESESIVQQAIDKIS-VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLE 898 (1560)
Q Consensus 831 ~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l~~ 898 (1560)
++|||||||++||+.+...+.+.|+++. ++.|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 157 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 157 KLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred CEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 9999999999999999999999999874 47899999999999965 99999999999999999888754
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-38 Score=341.36 Aligned_cols=172 Identities=45% Similarity=0.727 Sum_probs=160.9
Q ss_pred EEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHHHhccEE
Q 000406 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIG 752 (1560)
Q Consensus 673 i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~ 752 (1560)
|+++|++++|+.. ..++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...++++++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (173)
T cd03246 1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVG 79 (173)
T ss_pred CEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheE
Confidence 5789999999742 245899999999999999999999999999999999999999999999999998888878888999
Q ss_pred EEecCCcCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHHhccCCCE
Q 000406 753 MVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRI 832 (1560)
Q Consensus 753 ~v~Q~~~lf~~Tv~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARAl~~~p~i 832 (1560)
|++|++.+|+.|++||+ ||||||||++|||||+.+|++
T Consensus 80 ~~~q~~~~~~~tv~~~l------------------------------------------LS~G~~qrv~la~al~~~p~~ 117 (173)
T cd03246 80 YLPQDDELFSGSIAENI------------------------------------------LSGGQRQRLGLARALYGNPRI 117 (173)
T ss_pred EECCCCccccCcHHHHC------------------------------------------cCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999997 999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCccccccCCEEEEEeCCeE
Q 000406 833 LLLDEPTSALDSESESIVQQAIDKIS-VGRTTIVIAHRLATVKNANTIVVLDQGSV 887 (1560)
Q Consensus 833 llLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~~D~i~vl~~G~i 887 (1560)
|||||||++||+.+...+.+.|+++. +|+|+|++||+++.+..||+|++|++|++
T Consensus 118 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 118 LVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 99999999999999999999998874 48999999999998877999999999974
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-38 Score=355.17 Aligned_cols=213 Identities=24% Similarity=0.413 Sum_probs=179.9
Q ss_pred cEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHHHhccE
Q 000406 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQI 751 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 751 (1560)
.|+++|+++.|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 7 ~i~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (225)
T PRK10247 7 LLQLQNVGYLAGD---AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQV 83 (225)
T ss_pred eEEEeccEEeeCC---ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhcc
Confidence 5899999999963 4599999999999999999999999999999999999999999999999999887777778899
Q ss_pred EEEecCCcCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHHHHHhCCCCCC-cccCCCCCCCChHHHHHHHHHHHhccCC
Q 000406 752 GMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYD-TQVGDRGTQLSGGQKQRIALARAMIKDP 830 (1560)
Q Consensus 752 ~~v~Q~~~lf~~Tv~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~-t~~~~~g~~LSgGQrQRialARAl~~~p 830 (1560)
+|++|++.+|+.|++||+.++.......... ..+.+.++.+ |+. +..+..+.+||||||||++|||||+++|
T Consensus 84 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv~laral~~~p 156 (225)
T PRK10247 84 SYCAQTPTLFGDTVYDNLIFPWQIRNQQPDP-----AIFLDDLERF--ALPDTILTKNIAELSGGEKQRISLIRNLQFMP 156 (225)
T ss_pred EEEecccccccccHHHHHHhHHhhcCCChHH-----HHHHHHHHHc--CCChHHhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 9999999999889999998642100000000 1122344554 453 4567778899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCccccccCCEEEEEe-CCeEEEecChh
Q 000406 831 RILLLDEPTSALDSESESIVQQAIDKIS--VGRTTIVIAHRLATVKNANTIVVLD-QGSVVEIGNHR 894 (1560)
Q Consensus 831 ~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~~D~i~vl~-~G~iv~~G~~~ 894 (1560)
++|||||||++||+.+...+.+.|+++. .++|+|++||+++.+..||+|++|+ ++..+++|+|+
T Consensus 157 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 157 KVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 9999999999999999999999999874 3889999999999998899999995 67777778775
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-38 Score=352.73 Aligned_cols=205 Identities=32% Similarity=0.565 Sum_probs=173.0
Q ss_pred EEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCC--ccHHHHhcc
Q 000406 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKS--LQVKWLRTQ 750 (1560)
Q Consensus 673 i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~--~~~~~lr~~ 750 (1560)
|+++|++++|++ .++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.. .+...+++.
T Consensus 1 l~~~~l~~~~~~---~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (213)
T cd03262 1 IEIKNLHKSFGD---FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQK 77 (213)
T ss_pred CEEEEEEEEECC---eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhc
Confidence 478999999964 458999999999999999999999999999999999999999999999998853 344567789
Q ss_pred EEEEecCCcCcc-ccHHHHHhcCCC---CCCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHHh
Q 000406 751 IGMVGQEPILFA-TSILENVLMGKE---NATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAM 826 (1560)
Q Consensus 751 i~~v~Q~~~lf~-~Tv~eNi~~g~~---~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARAl 826 (1560)
|+|++|++.+|+ .|++||+.++.. ....++..+ .+.+.++.+ |++..+.....+||||||||++|||||
T Consensus 78 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al 150 (213)
T cd03262 78 VGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEE-----RALELLEKV--GLADKADAYPAQLSGGQQQRVAIARAL 150 (213)
T ss_pred ceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHH-----HHHHHHHHc--CCHhHhhhCccccCHHHHHHHHHHHHH
Confidence 999999999987 599999987531 111221111 123344444 555666777789999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCcccccc-CCEEEEEeCCeE
Q 000406 827 IKDPRILLLDEPTSALDSESESIVQQAIDKIS-VGRTTIVIAHRLATVKN-ANTIVVLDQGSV 887 (1560)
Q Consensus 827 ~~~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~D~i~vl~~G~i 887 (1560)
+.+|++|||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++
T Consensus 151 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 151 AMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999874 48999999999999975 999999999974
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-38 Score=360.68 Aligned_cols=217 Identities=30% Similarity=0.451 Sum_probs=181.1
Q ss_pred cEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCC-----CccEEEECCeecCCc--cH
Q 000406 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDP-----TKGLITLDGHDLKSL--QV 744 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~-----~~G~I~i~g~~i~~~--~~ 744 (1560)
.|+++|+++.|+. ..+|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++... +.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 4 KMESKNLNLWYGE---KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred EEEEEEeEEEECC---eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 5899999999963 4589999999999999999999999999999999999875 799999999998643 34
Q ss_pred HHHhccEEEEecCCcCccccHHHHHhcCCCCC---CHH----HHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHH
Q 000406 745 KWLRTQIGMVGQEPILFATSILENVLMGKENA---TMK----EAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQK 817 (1560)
Q Consensus 745 ~~lr~~i~~v~Q~~~lf~~Tv~eNi~~g~~~~---~~~----~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQr 817 (1560)
..+++.++|+||++.+|+.|++||+.++.... ... ++.++++..++.+ ++....+..+.+||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~G~~ 153 (251)
T PRK14270 81 VELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWD-------EVKDDLKKSALKLSGGQQ 153 (251)
T ss_pred HHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCch-------hhhhHhhCCcccCCHHHH
Confidence 46678899999999999999999998753211 111 1122222222211 222334567789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhH
Q 000406 818 QRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQL 896 (1560)
Q Consensus 818 QRialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l 896 (1560)
||++||||++.+|+||||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 154 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14270 154 QRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKI 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988667999999999999876 999999999999999999987
Q ss_pred hh
Q 000406 897 LE 898 (1560)
Q Consensus 897 ~~ 898 (1560)
..
T Consensus 234 ~~ 235 (251)
T PRK14270 234 FL 235 (251)
T ss_pred hc
Confidence 64
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-38 Score=362.39 Aligned_cols=218 Identities=30% Similarity=0.479 Sum_probs=181.9
Q ss_pred ccEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCC-----CccEEEECCeecCC--cc
Q 000406 671 GKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDP-----TKGLITLDGHDLKS--LQ 743 (1560)
Q Consensus 671 g~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~-----~~G~I~i~g~~i~~--~~ 743 (1560)
+.|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|+++.. ..
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (259)
T PRK14260 6 PAIKVKDLSFYYNT---SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRIN 82 (259)
T ss_pred ceEEEEEEEEEECC---eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccc
Confidence 36999999999963 4589999999999999999999999999999999999985 48999999998854 34
Q ss_pred HHHHhccEEEEecCCcCccccHHHHHhcCCCC---CCH----HHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHH
Q 000406 744 VKWLRTQIGMVGQEPILFATSILENVLMGKEN---ATM----KEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQ 816 (1560)
Q Consensus 744 ~~~lr~~i~~v~Q~~~lf~~Tv~eNi~~g~~~---~~~----~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQ 816 (1560)
...++.+|+||+|++.+|+.|++||+.++... ... +.+.++++..++.+++ ....+..+.+|||||
T Consensus 83 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~G~ 155 (259)
T PRK14260 83 INRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEV-------KDKLNKSALGLSGGQ 155 (259)
T ss_pred hHhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchh-------hhHhcCCcccCCHHH
Confidence 45677889999999999999999999875311 111 1222333333332221 223456678999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCcccccc-CCEEEEEe-----CCeEEEe
Q 000406 817 KQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKN-ANTIVVLD-----QGSVVEI 890 (1560)
Q Consensus 817 rQRialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~D~i~vl~-----~G~iv~~ 890 (1560)
|||++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++++|+ +|++++.
T Consensus 156 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~ 235 (259)
T PRK14260 156 QQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEF 235 (259)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEe
Confidence 99999999999999999999999999999999999999988767999999999999876 99999997 5999999
Q ss_pred cChhhHhh
Q 000406 891 GNHRQLLE 898 (1560)
Q Consensus 891 G~~~~l~~ 898 (1560)
|+++++.+
T Consensus 236 ~~~~~~~~ 243 (259)
T PRK14260 236 GVTTQIFS 243 (259)
T ss_pred CCHHHHhc
Confidence 99998864
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-38 Score=360.66 Aligned_cols=217 Identities=30% Similarity=0.512 Sum_probs=181.4
Q ss_pred cEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCC-----CccEEEECCeecC-CccHH
Q 000406 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDP-----TKGLITLDGHDLK-SLQVK 745 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~-----~~G~I~i~g~~i~-~~~~~ 745 (1560)
.|+++|+++.|+. +++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++. ..+..
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 79 (249)
T PRK14253 3 KFNIENLDLFYGE---NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVA 79 (249)
T ss_pred eEEEeccEEEECC---eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchH
Confidence 4889999999963 4589999999999999999999999999999999999986 5999999999885 34556
Q ss_pred HHhccEEEEecCCcCccccHHHHHhcCCCC--CC-HH----HHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHH
Q 000406 746 WLRTQIGMVGQEPILFATSILENVLMGKEN--AT-MK----EAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQ 818 (1560)
Q Consensus 746 ~lr~~i~~v~Q~~~lf~~Tv~eNi~~g~~~--~~-~~----~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQ 818 (1560)
.+|+.++|++|++.+|+.|++||+.++... .. .+ ++.++++..++.+ ++...++..+.+|||||||
T Consensus 80 ~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~~~~~~LS~G~~q 152 (249)
T PRK14253 80 DLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWD-------EVKDRLKSHAFGLSGGQQQ 152 (249)
T ss_pred HHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCch-------hhhHHhhcCcccCCHHHHH
Confidence 778889999999999989999999875321 11 11 1122222222211 1223456667899999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhHh
Q 000406 819 RIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLL 897 (1560)
Q Consensus 819 RialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l~ 897 (1560)
|++|||||+.+|+||||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||++++|++|++++.|+++++.
T Consensus 153 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (249)
T PRK14253 153 RLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIF 232 (249)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999998767999999999999876 9999999999999999988775
Q ss_pred h
Q 000406 898 E 898 (1560)
Q Consensus 898 ~ 898 (1560)
.
T Consensus 233 ~ 233 (249)
T PRK14253 233 S 233 (249)
T ss_pred c
Confidence 3
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=355.30 Aligned_cols=202 Identities=32% Similarity=0.516 Sum_probs=166.2
Q ss_pred EEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHHHhccEEE
Q 000406 674 EFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIGM 753 (1560)
Q Consensus 674 ~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~ 753 (1560)
+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++. .++++++|
T Consensus 1 ~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~ 72 (213)
T cd03235 1 EVEDLTVSYGG---HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGY 72 (213)
T ss_pred CcccceeEECC---EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEE
Confidence 36899999963 45899999999999999999999999999999999999999999999998764 35678999
Q ss_pred EecCCcC---ccccHHHHHhcCCCCC------CHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHH
Q 000406 754 VGQEPIL---FATSILENVLMGKENA------TMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALAR 824 (1560)
Q Consensus 754 v~Q~~~l---f~~Tv~eNi~~g~~~~------~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialAR 824 (1560)
|+|++.+ ++.|++||+.++.... ..++. ...+.+.++.+ |++........+||||||||++|||
T Consensus 73 v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~ 145 (213)
T cd03235 73 VPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKAD-----KAKVDEALERV--GLSELADRQIGELSGGQQQRVLLAR 145 (213)
T ss_pred eccccccccCCCCcHHHHHHhccccccccccCCCHHH-----HHHHHHHHHHc--CCHHHHhCCcccCCHHHHHHHHHHH
Confidence 9999876 5579999998764311 00111 11122334433 4444455667799999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCcccccc-CCEEEEEeCCeEEEec
Q 000406 825 AMIKDPRILLLDEPTSALDSESESIVQQAIDKIS-VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIG 891 (1560)
Q Consensus 825 Al~~~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G 891 (1560)
||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++| +++.|
T Consensus 146 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 146 ALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 9999999999999999999999999999998874 68999999999999876 9999999886 55543
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-38 Score=352.71 Aligned_cols=204 Identities=29% Similarity=0.436 Sum_probs=173.0
Q ss_pred EEEEEEEEEcCCCC-CccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHH---HHh
Q 000406 1314 IELKMVTFTYPSRP-EVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVK---WLR 1389 (1560)
Q Consensus 1314 I~~~nVsf~Y~~~~-~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~---~LR 1389 (1560)
++++||++.|+... ...+|+|+||++++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+.. ..|
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 78999999996421 24699999999999999999999999999999999999999999999999999877653 468
Q ss_pred hceEEEcCCCCCCC-ccHHHHHhcCCC---CCCHH----HHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 000406 1390 KQTALVGQEPALFA-GTIRDNIALGNP---KASWA----EIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRI 1461 (1560)
Q Consensus 1390 ~~I~~VpQdp~LF~-gTIreNL~~g~~---~~sd~----eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRL 1461 (1560)
+.++|+||++.+|. .|+.||+.++.. ..+.+ ++.++++..++.+++ ......||+|||||+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~lS~G~~qrv 150 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHL-----------DYYPHNLSGGQKQRV 150 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhh-----------hcChhhCCHHHHHHH
Confidence 89999999999987 699999986421 12222 344444444444433 334457999999999
Q ss_pred HHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CceEEEEecChHHHhhcCEEEEEeCCEE
Q 000406 1462 AIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSK--RATTIVVAHRLSTIREANMIAVVRDGAV 1528 (1560)
Q Consensus 1462 aLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~--~~TvI~IAHRlsti~~aDrIlVLd~G~I 1528 (1560)
+|||||+++|++|||||||++||+++.+.+.+.|++..+ ++|+|+|||+++.+..||+|++|++|++
T Consensus 151 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 151 AIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 999999999999999999999999999999999998753 7999999999998777999999999986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-38 Score=375.31 Aligned_cols=207 Identities=30% Similarity=0.436 Sum_probs=175.8
Q ss_pred EEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCC----HHHHhhceE
Q 000406 1318 MVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREIN----VKWLRKQTA 1393 (1560)
Q Consensus 1318 nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~----l~~LR~~I~ 1393 (1560)
||+++|++ . .+ |+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+ ...+|+.++
T Consensus 4 ~l~~~~~~---~-~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~ 78 (354)
T TIGR02142 4 RFSKRLGD---F-SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIG 78 (354)
T ss_pred EEEEEECC---E-EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeE
Confidence 88999953 2 35 999999999999999999999999999999999999999999999987543 345688999
Q ss_pred EEcCCCCCCCc-cHHHHHhcCCCCCCH----HHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHc
Q 000406 1394 LVGQEPALFAG-TIRDNIALGNPKASW----AEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAIL 1468 (1560)
Q Consensus 1394 ~VpQdp~LF~g-TIreNL~~g~~~~sd----~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLARALL 1468 (1560)
||||++.+|.. |++||+.++...... +++.++++..++ +.........||||||||++|||||+
T Consensus 79 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL-----------~~~~~~~~~~LSgGqkqRvalAraL~ 147 (354)
T TIGR02142 79 YVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGI-----------GHLLGRLPGRLSGGEKQRVAIGRALL 147 (354)
T ss_pred EEecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCC-----------hhHhcCChhhCCHHHHHHHHHHHHHH
Confidence 99999999975 999999876332221 224444444444 33344445689999999999999999
Q ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHHHhh
Q 000406 1469 KGSRVLLLDEASSALDLESEKHVQDALRKVSK--RATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLAS 1540 (1560)
Q Consensus 1469 r~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~--~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eLl~~ 1540 (1560)
.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++..+
T Consensus 148 ~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (354)
T TIGR02142 148 SSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWAS 222 (354)
T ss_pred cCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcC
Confidence 99999999999999999999999999998754 6899999999999876 999999999999999999999873
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-38 Score=364.27 Aligned_cols=220 Identities=29% Similarity=0.476 Sum_probs=183.7
Q ss_pred cEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCC-----CccEEEECCeecCCcc-HH
Q 000406 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDP-----TKGLITLDGHDLKSLQ-VK 745 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~-----~~G~I~i~g~~i~~~~-~~ 745 (1560)
.|+++||+++|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++...+ ..
T Consensus 21 ~l~i~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 97 (276)
T PRK14271 21 AMAAVNLTLGFAG---KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVL 97 (276)
T ss_pred EEEEeeEEEEECC---EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhH
Confidence 5899999999973 4689999999999999999999999999999999999986 6999999999987653 34
Q ss_pred HHhccEEEEecCCcCccccHHHHHhcCCCC---CCHHHHHHHHHHhhhHHHHHhC--CCCCCcccCCCCCCCChHHHHHH
Q 000406 746 WLRTQIGMVGQEPILFATSILENVLMGKEN---ATMKEAVAACKAASAHSFISEL--PLGYDTQVGDRGTQLSGGQKQRI 820 (1560)
Q Consensus 746 ~lr~~i~~v~Q~~~lf~~Tv~eNi~~g~~~---~~~~~~~~~~~~~~~~~~i~~l--~~gl~t~~~~~g~~LSgGQrQRi 820 (1560)
.++++|+|++|++.+|+.|++||+.++... .+.++....+ .+.++.+ ...+.+.++..+.+||||||||+
T Consensus 98 ~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~-----~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl 172 (276)
T PRK14271 98 EFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVA-----QARLTEVGLWDAVKDRLSDSPFRLSGGQQQLL 172 (276)
T ss_pred HHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHH-----HHHHHHcCCCchhhhHhhCCcccCCHHHHHHH
Confidence 567889999999999999999999875321 1222222111 1223332 11122345677789999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhHhhh
Q 000406 821 ALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLER 899 (1560)
Q Consensus 821 alARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l~~~ 899 (1560)
+|||||+.+|+||||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 173 ~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 252 (276)
T PRK14271 173 CLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSS 252 (276)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999999988667899999999999876 999999999999999999988653
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=363.55 Aligned_cols=218 Identities=30% Similarity=0.504 Sum_probs=180.0
Q ss_pred ccEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCC-----CCccEEEECCeecCC--cc
Q 000406 671 GKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYD-----PTKGLITLDGHDLKS--LQ 743 (1560)
Q Consensus 671 g~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~-----~~~G~I~i~g~~i~~--~~ 743 (1560)
..|+++|++++|+. ..+|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .+
T Consensus 38 ~~l~i~~l~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 114 (285)
T PRK14254 38 TVIEARDLNVFYGD---EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114 (285)
T ss_pred ceEEEEEEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccc
Confidence 35999999999963 459999999999999999999999999999999999997 689999999999864 34
Q ss_pred HHHHhccEEEEecCCcCccccHHHHHhcCCCC--CC---HHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHH
Q 000406 744 VKWLRTQIGMVGQEPILFATSILENVLMGKEN--AT---MKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQ 818 (1560)
Q Consensus 744 ~~~lr~~i~~v~Q~~~lf~~Tv~eNi~~g~~~--~~---~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQ 818 (1560)
...++++++||+|++.+|+.|++||+.++... .. .+++.++++..++.. .+...++..+.+|||||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~i~~~~~~~~~~LSgGe~q 187 (285)
T PRK14254 115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWD-------EVKDQLDSSGLDLSGGQQQ 187 (285)
T ss_pred hHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCc-------hhHHHHhCCcccCCHHHHH
Confidence 55678899999999999988999999875311 11 112222222222211 1122356677899999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCcccccc-CCEEE-EEeCCeEEEecChhhH
Q 000406 819 RIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKN-ANTIV-VLDQGSVVEIGNHRQL 896 (1560)
Q Consensus 819 RialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~D~i~-vl~~G~iv~~G~~~~l 896 (1560)
|++|||||+++|+||||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. |||++ +|++|+|++.|+++++
T Consensus 188 rv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~ 267 (285)
T PRK14254 188 RLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKI 267 (285)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999998666899999999999876 99975 6799999999998887
Q ss_pred hh
Q 000406 897 LE 898 (1560)
Q Consensus 897 ~~ 898 (1560)
..
T Consensus 268 ~~ 269 (285)
T PRK14254 268 FE 269 (285)
T ss_pred Hh
Confidence 54
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-38 Score=359.87 Aligned_cols=220 Identities=31% Similarity=0.471 Sum_probs=180.1
Q ss_pred cEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCC-----ccEEEECCeecCC--ccH
Q 000406 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPT-----KGLITLDGHDLKS--LQV 744 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~-----~G~I~i~g~~i~~--~~~ 744 (1560)
.|+++|++++|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.++.. .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (252)
T PRK14272 4 LLSAQDVNIYYGD---KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDP 80 (252)
T ss_pred EEEEeeeEEEECC---EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCH
Confidence 4789999999963 46999999999999999999999999999999999999874 8999999999864 334
Q ss_pred HHHhccEEEEecCCcCccc-cHHHHHhcCCCC--C-CHHHHHHHHHHhhhHHHHHhCC--CCCCcccCCCCCCCChHHHH
Q 000406 745 KWLRTQIGMVGQEPILFAT-SILENVLMGKEN--A-TMKEAVAACKAASAHSFISELP--LGYDTQVGDRGTQLSGGQKQ 818 (1560)
Q Consensus 745 ~~lr~~i~~v~Q~~~lf~~-Tv~eNi~~g~~~--~-~~~~~~~~~~~~~~~~~i~~l~--~gl~t~~~~~g~~LSgGQrQ 818 (1560)
..+|+.|+|++|++.+|.. |+.||+.++... . ..++..+.+. +.+..+. .++.......+.+|||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~-----~~l~~~~l~~~l~~~~~~~~~~LS~G~~q 155 (252)
T PRK14272 81 VAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAE-----RSLRGAALWDEVKDRLKTPATGLSGGQQQ 155 (252)
T ss_pred HHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHH-----HHHHHcCcchhhhhhhcCCcccCCHHHHH
Confidence 5667889999999999885 999999864321 1 1222222211 1111110 11222334556789999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhHh
Q 000406 819 RIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLL 897 (1560)
Q Consensus 819 RialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l~ 897 (1560)
|++|||||+++|+||||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|++++++
T Consensus 156 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14272 156 RLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLF 235 (252)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999988668999999999999876 9999999999999999999886
Q ss_pred hh
Q 000406 898 ER 899 (1560)
Q Consensus 898 ~~ 899 (1560)
..
T Consensus 236 ~~ 237 (252)
T PRK14272 236 TN 237 (252)
T ss_pred hC
Confidence 53
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-38 Score=362.36 Aligned_cols=221 Identities=29% Similarity=0.396 Sum_probs=183.6
Q ss_pred EEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCC--------ccEEEECCeecCCccH
Q 000406 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPT--------KGLITLDGHDLKSLQV 744 (1560)
Q Consensus 673 i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~--------~G~I~i~g~~i~~~~~ 744 (1560)
|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++...+.
T Consensus 2 l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (272)
T PRK13547 2 LTADHLHVARRH---RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDA 78 (272)
T ss_pred eEEEEEEEEECC---EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCH
Confidence 789999999963 45899999999999999999999999999999999999998 9999999999987777
Q ss_pred HHHhccEEEEecCCc-CccccHHHHHhcCCCCC-CHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHH
Q 000406 745 KWLRTQIGMVGQEPI-LFATSILENVLMGKENA-TMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIAL 822 (1560)
Q Consensus 745 ~~lr~~i~~v~Q~~~-lf~~Tv~eNi~~g~~~~-~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRial 822 (1560)
..+++.++||+|++. ++..|++||+.++.... .............+.+.++.+ |+.+.++....+||||||||++|
T Consensus 79 ~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~l 156 (272)
T PRK13547 79 PRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALA--GATALVGRDVTTLSGGELARVQF 156 (272)
T ss_pred HHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHc--CcHhhhcCCcccCCHHHHHHHHH
Confidence 777788999999986 56779999998763210 000000000011122334443 66667778888999999999999
Q ss_pred HHHhc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CcEEEEEecCcccccc-CCEEEEEeCCeEEEe
Q 000406 823 ARAMI---------KDPRILLLDEPTSALDSESESIVQQAIDKIS-V-GRTTIVIAHRLATVKN-ANTIVVLDQGSVVEI 890 (1560)
Q Consensus 823 ARAl~---------~~p~illLDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~ 890 (1560)
||||+ .+|++|||||||++||+.+.+.+.+.|+++. + ++|+|+|||+++.+.. ||++++|++|++++.
T Consensus 157 aral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~~~ 236 (272)
T PRK13547 157 ARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAH 236 (272)
T ss_pred HHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEEe
Confidence 99999 5999999999999999999999999999874 3 7999999999999865 999999999999999
Q ss_pred cChhhHhh
Q 000406 891 GNHRQLLE 898 (1560)
Q Consensus 891 G~~~~l~~ 898 (1560)
|++++++.
T Consensus 237 g~~~~~~~ 244 (272)
T PRK13547 237 GAPADVLT 244 (272)
T ss_pred cCHHHHcC
Confidence 99988764
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-38 Score=370.88 Aligned_cols=204 Identities=23% Similarity=0.400 Sum_probs=172.8
Q ss_pred ccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHHHhccEEEEecCCcCccc-cHH
Q 000406 688 TVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIGMVGQEPILFAT-SIL 766 (1560)
Q Consensus 688 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~-Tv~ 766 (1560)
.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...+|++|+||||++.++.. |++
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~~~q~~~~~~~~tv~ 84 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVRE-PRKVRRSIGIVPQYASVDEDLTGR 84 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccC-HHHHHhhcEEecCCCCCCCCCcHH
Confidence 4689999999999999999999999999999999999999999999999998753 34567889999999999876 999
Q ss_pred HHHhcCCCC--CCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCH
Q 000406 767 ENVLMGKEN--ATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDS 844 (1560)
Q Consensus 767 eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARAl~~~p~illLDEpts~LD~ 844 (1560)
||+.+.... ....+..+ .+.+.++.+ |+.........+||||||||++|||||+.+|++|||||||++||+
T Consensus 85 e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~ 157 (302)
T TIGR01188 85 ENLEMMGRLYGLPKDEAEE-----RAEELLELF--ELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDP 157 (302)
T ss_pred HHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCH
Confidence 999874211 11111111 122344444 455555667789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc-CCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhHhhh
Q 000406 845 ESESIVQQAIDKIS-VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLER 899 (1560)
Q Consensus 845 ~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l~~~ 899 (1560)
.+.+.+.+.|+++. +|+|||++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 158 ~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 158 RTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 99999999999874 58999999999999976 999999999999999999988653
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-38 Score=353.83 Aligned_cols=231 Identities=29% Similarity=0.448 Sum_probs=185.7
Q ss_pred EEEEEEEEEcCCCC-CccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccC-C----CccEEEECCEecCCCCHHH
Q 000406 1314 IELKMVTFTYPSRP-EVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYD-P----NQGKVMIEGVDLREINVKW 1387 (1560)
Q Consensus 1314 I~~~nVsf~Y~~~~-~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~-p----~~G~I~IdGvdi~~i~l~~ 1387 (1560)
++++|++..|.... ...+++||||+|++||++||||.|||||||+.++|+|+++ | .+|+|.++|.|+..++.++
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 68899999997532 2469999999999999999999999999999999999998 3 5799999999999999876
Q ss_pred Hh----hceEEEcCCCC--CCC-ccHHHH----HhcCCCCCC----HHHHHHHHHHHhHHHHHHhCCCCccccccCCCCC
Q 000406 1388 LR----KQTALVGQEPA--LFA-GTIRDN----IALGNPKAS----WAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQ 1452 (1560)
Q Consensus 1388 LR----~~I~~VpQdp~--LF~-gTIreN----L~~g~~~~s----d~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~ 1452 (1560)
+| +.|++|||||. |-+ -||.+- +..-....+ .+++.+.|+.+++.+- +..+..-..+
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~--------~~~~~~YPhe 153 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDP--------ERRLKSYPHE 153 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCH--------HHHHhhCCcc
Confidence 54 47999999995 221 244433 332111101 2345666666666431 1123334568
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CceEEEEecChHHHhh-cCEEEEEeCCEEE
Q 000406 1453 LSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSK--RATTIVVAHRLSTIRE-ANMIAVVRDGAVV 1529 (1560)
Q Consensus 1453 LSGGQrQRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~--~~TvI~IAHRlsti~~-aDrIlVLd~G~Iv 1529 (1560)
||||||||+.||-||+.+|++||.||||++||..+.++|.+.|+++.+ +.|+|+|||++..+.. ||||+||.+|+||
T Consensus 154 lSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iV 233 (316)
T COG0444 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIV 233 (316)
T ss_pred cCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEE
Confidence 999999999999999999999999999999999999999999998764 7899999999999876 9999999999999
Q ss_pred EecCHHHHHhhccChHHHHHHHH
Q 000406 1530 EYGSHETLLASHLNGVYASLVRA 1552 (1560)
Q Consensus 1530 E~Gt~~eLl~~~~~g~y~~l~~~ 1552 (1560)
|.|+.++++++.+..+-+.|++.
T Consensus 234 E~g~~~~i~~~P~HPYT~~Ll~s 256 (316)
T COG0444 234 EEGPVEEIFKNPKHPYTRGLLNS 256 (316)
T ss_pred EeCCHHHHhcCCCChHHHHHHHh
Confidence 99999999986555555566554
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=358.76 Aligned_cols=218 Identities=32% Similarity=0.494 Sum_probs=182.6
Q ss_pred cEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCC-----CCccEEEECCeecCCc--cH
Q 000406 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYD-----PTKGLITLDGHDLKSL--QV 744 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~-----~~~G~I~i~g~~i~~~--~~ 744 (1560)
.|+++||++.|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.+||.++... +.
T Consensus 3 ~l~~~~v~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 79 (250)
T PRK14266 3 RIEVENLNTYFDD---AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDV 79 (250)
T ss_pred EEEEEeEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccH
Confidence 4789999999963 459999999999999999999999999999999999864 4899999999998653 35
Q ss_pred HHHhccEEEEecCCcCccccHHHHHhcCCCC--C-CHH----HHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHH
Q 000406 745 KWLRTQIGMVGQEPILFATSILENVLMGKEN--A-TMK----EAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQK 817 (1560)
Q Consensus 745 ~~lr~~i~~v~Q~~~lf~~Tv~eNi~~g~~~--~-~~~----~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQr 817 (1560)
..++++++|+||++.+|+.|++||+.++... . ..+ ++.++++..++.+++. ...+..+.+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~Gq~ 152 (250)
T PRK14266 80 VELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVK-------DKLDKSALGLSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHH-------HHHhCCcccCCHHHH
Confidence 5678899999999999999999999875321 1 111 2233344444433322 223566779999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhH
Q 000406 818 QRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQL 896 (1560)
Q Consensus 818 QRialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l 896 (1560)
||++|||||+++|+||||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14266 153 QRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQI 232 (250)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999876 999999999999999999988
Q ss_pred hhh
Q 000406 897 LER 899 (1560)
Q Consensus 897 ~~~ 899 (1560)
...
T Consensus 233 ~~~ 235 (250)
T PRK14266 233 FIN 235 (250)
T ss_pred HhC
Confidence 643
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-38 Score=347.29 Aligned_cols=228 Identities=32% Similarity=0.521 Sum_probs=195.2
Q ss_pred cEEEEEEEEEcCCCCC---------------------ccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCcc
Q 000406 1313 GIELKMVTFTYPSRPE---------------------VTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQG 1371 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~~~---------------------~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G 1371 (1560)
.|+++||+.-|..++. ..-++|+||+|+.||+..|.|-||||||||+++|.|+++|+.|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 4788888877753221 1247899999999999999999999999999999999999999
Q ss_pred EEEECCEecCCCCHHHHh----hceEEEcCCCCCCC-ccHHHHHhcCCC--CCC----HHHHHHHHHHHhHHHHHHhCCC
Q 000406 1372 KVMIEGVDLREINVKWLR----KQTALVGQEPALFA-GTIRDNIALGNP--KAS----WAEIEEAAEEAYIHKFISSLPQ 1440 (1560)
Q Consensus 1372 ~I~IdGvdi~~i~l~~LR----~~I~~VpQdp~LF~-gTIreNL~~g~~--~~s----d~eI~~al~~a~l~~~I~~Lp~ 1440 (1560)
+|++||.|+..++.++|| +++++|+|..-||+ .||.||..||.. ..+ .+...++++.++|.+|-.+.|+
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~ 163 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPN 163 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcc
Confidence 999999999999988774 57999999999886 599999999842 222 3446788999999988877764
Q ss_pred CccccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CceEEEEecChHHHhh-c
Q 000406 1441 GYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSK--RATTIVVAHRLSTIRE-A 1517 (1560)
Q Consensus 1441 Gldt~Vge~G~~LSGGQrQRLaLARALLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~--~~TvI~IAHRlsti~~-a 1517 (1560)
+||||+|||+.|||||..+|+||++|||.|+|||--...+|+-|.++.+ .+|+|+|||+|+.... -
T Consensus 164 -----------eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG 232 (386)
T COG4175 164 -----------ELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIG 232 (386)
T ss_pred -----------cccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhcc
Confidence 6999999999999999999999999999999999999999999987643 5899999999998655 9
Q ss_pred CEEEEEeCCEEEEecCHHHHHhhccChHHHHHHH
Q 000406 1518 NMIAVVRDGAVVEYGSHETLLASHLNGVYASLVR 1551 (1560)
Q Consensus 1518 DrIlVLd~G~IvE~Gt~~eLl~~~~~g~y~~l~~ 1551 (1560)
|||..|++|+|+..|||+|++.+..+.+-+++++
T Consensus 233 ~rIaimkdG~ivQ~Gtp~eIl~~PAndYV~~Fv~ 266 (386)
T COG4175 233 DRIAIMKDGEIVQVGTPEEILLNPANDYVRDFVR 266 (386)
T ss_pred ceEEEecCCeEEEeCCHHHHHcCccHHHHHHHHh
Confidence 9999999999999999999998543443344443
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=349.20 Aligned_cols=205 Identities=29% Similarity=0.472 Sum_probs=169.1
Q ss_pred EEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHHHhccEE
Q 000406 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIG 752 (1560)
Q Consensus 673 i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~ 752 (1560)
|+++|++++|++ .. .|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++
T Consensus 1 i~~~~l~~~~~~---~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 73 (211)
T cd03298 1 VRLDKIRFSYGE---QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVS 73 (211)
T ss_pred CEEEeEEEEeCC---Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEE
Confidence 578999999963 22 39999999999999999999999999999999999999999999999876543 356899
Q ss_pred EEecCCcCccc-cHHHHHhcCCCC-CC-HHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHHhccC
Q 000406 753 MVGQEPILFAT-SILENVLMGKEN-AT-MKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKD 829 (1560)
Q Consensus 753 ~v~Q~~~lf~~-Tv~eNi~~g~~~-~~-~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARAl~~~ 829 (1560)
|++|++.+|.+ |++||+.++... .. .++.. ..+.+.++.+ |++........+||||||||++|||||+.+
T Consensus 74 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~ia~al~~~ 146 (211)
T cd03298 74 MLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDR-----QAIEVALARV--GLAGLEKRLPGELSGGERQRVALARVLVRD 146 (211)
T ss_pred EEecccccCCCCcHHHHHhcccccccCccHHHH-----HHHHHHHHHc--CCHHHHhCCcccCCHHHHHHHHHHHHHhcC
Confidence 99999999976 999999876421 11 01101 1112223332 444445556678999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCcccccc-CCEEEEEeCCeEEEec
Q 000406 830 PRILLLDEPTSALDSESESIVQQAIDKIS--VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIG 891 (1560)
Q Consensus 830 p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G 891 (1560)
|++|||||||++||+.++..+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 147 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 147 KPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 99999999999999999999999999874 38999999999999976 9999999999998754
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=352.03 Aligned_cols=205 Identities=24% Similarity=0.391 Sum_probs=176.4
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhhceE
Q 000406 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTA 1393 (1560)
Q Consensus 1314 I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~~I~ 1393 (1560)
++++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.... ++.++
T Consensus 1 l~l~~v~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~----~~~~~ 73 (223)
T TIGR03740 1 LETKNLSKRFGK---QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD----LHKIG 73 (223)
T ss_pred CEEEeEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc----cccEE
Confidence 578999999963 36999999999999999999999999999999999999999999999999875422 35799
Q ss_pred EEcCCCCCCC-ccHHHHHhcCC--CCCCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHccC
Q 000406 1394 LVGQEPALFA-GTIRDNIALGN--PKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKG 1470 (1560)
Q Consensus 1394 ~VpQdp~LF~-gTIreNL~~g~--~~~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLARALLr~ 1470 (1560)
|+||++.+|. .|++||+.++. ....++++.++++..++.+.... ....||||||||++||||++++
T Consensus 74 ~~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~~rv~laral~~~ 142 (223)
T TIGR03740 74 SLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKK-----------KAKQFSLGMKQRLGIAIALLNH 142 (223)
T ss_pred EEcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhh-----------hHhhCCHHHHHHHHHHHHHhcC
Confidence 9999998886 69999997532 12345667777776666554322 2347999999999999999999
Q ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHH
Q 000406 1471 SRVLLLDEASSALDLESEKHVQDALRKVS-KRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHET 1536 (1560)
Q Consensus 1471 p~ILILDEaTSaLD~~Te~~I~~~L~~~~-~~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~e 1536 (1560)
|+||||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|++.+
T Consensus 143 p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 143 PKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred CCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 99999999999999999999999999875 46899999999999865 99999999999999998765
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-38 Score=327.94 Aligned_cols=212 Identities=30% Similarity=0.510 Sum_probs=181.8
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhhceE
Q 000406 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTA 1393 (1560)
Q Consensus 1314 I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~~I~ 1393 (1560)
+++.+++.+|++ ...+++||||+++.||.+||.|+|||||||+++.|..|+.|++|+|.|||+|+.+- +...|++||
T Consensus 2 l~v~~l~K~y~~--~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~-p~~vrr~IG 78 (245)
T COG4555 2 LEVTDLTKSYGS--KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRD-PSFVRRKIG 78 (245)
T ss_pred eeeeehhhhccC--HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccC-hHHHhhhcc
Confidence 678999999975 23589999999999999999999999999999999999999999999999998774 567899999
Q ss_pred EEcCCCCCCC-ccHHHHHhcCCC--CCCH----HHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 000406 1394 LVGQEPALFA-GTIRDNIALGNP--KASW----AEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARA 1466 (1560)
Q Consensus 1394 ~VpQdp~LF~-gTIreNL~~g~~--~~sd----~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLARA 1466 (1560)
+++-+.-|+. .|.||||.|+.. +..+ .++.+.-+..++.+. +|..++ +||-|+|||++||||
T Consensus 79 Vl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~-------~~rRv~----~~S~G~kqkV~iARA 147 (245)
T COG4555 79 VLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEY-------LDRRVG----EFSTGMKQKVAIARA 147 (245)
T ss_pred eecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHH-------HHHHHh----hhchhhHHHHHHHHH
Confidence 9997777775 599999987521 2222 233333344444433 345555 699999999999999
Q ss_pred HccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC-CceEEEEecChHHHhh-cCEEEEEeCCEEEEecCHHHHHh
Q 000406 1467 ILKGSRVLLLDEASSALDLESEKHVQDALRKVSK-RATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLA 1539 (1560)
Q Consensus 1467 LLr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~-~~TvI~IAHRlsti~~-aDrIlVLd~G~IvE~Gt~~eLl~ 1539 (1560)
|+++|+|+|||||||+||.-+.+.+++-|++... +++||+-||-++.++. ||||+++.+|+++..|++++|.+
T Consensus 148 lvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~ 222 (245)
T COG4555 148 LVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDA 222 (245)
T ss_pred HhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHH
Confidence 9999999999999999999999999999998754 8999999999999984 99999999999999999999987
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=360.20 Aligned_cols=218 Identities=30% Similarity=0.473 Sum_probs=181.6
Q ss_pred ccEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCC-----CccEEEECCeecCC--cc
Q 000406 671 GKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDP-----TKGLITLDGHDLKS--LQ 743 (1560)
Q Consensus 671 g~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~-----~~G~I~i~g~~i~~--~~ 743 (1560)
-.|+++|++++|+. ..+|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|+++.. .+
T Consensus 19 ~~l~~~nl~~~~~~---~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~ 95 (274)
T PRK14265 19 SVFEVEGVKVFYGG---FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQIN 95 (274)
T ss_pred ceEEEeeEEEEeCC---eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccch
Confidence 36999999999963 3589999999999999999999999999999999999863 69999999999864 33
Q ss_pred HHHHhccEEEEecCCcCccccHHHHHhcCCCCCC-----HHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHH
Q 000406 744 VKWLRTQIGMVGQEPILFATSILENVLMGKENAT-----MKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQ 818 (1560)
Q Consensus 744 ~~~lr~~i~~v~Q~~~lf~~Tv~eNi~~g~~~~~-----~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQ 818 (1560)
...++++|+|++|++.+|+.|+.|||.++..... .+.+.++++.+++.+.+ ....+..+.+|||||||
T Consensus 96 ~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LSgGq~q 168 (274)
T PRK14265 96 SVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEV-------KDKLKEKGTALSGGQQQ 168 (274)
T ss_pred hHHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhh-------HHHhcCCcccCCHHHHH
Confidence 4466789999999999998899999987632110 11222233333332221 22345667899999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCcccccc-CCEEEEEe---------CCeEE
Q 000406 819 RIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKN-ANTIVVLD---------QGSVV 888 (1560)
Q Consensus 819 RialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~D~i~vl~---------~G~iv 888 (1560)
|++|||||+.+|+||||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++++|+ +|+++
T Consensus 169 rv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~ 248 (274)
T PRK14265 169 RLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLV 248 (274)
T ss_pred HHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEE
Confidence 999999999999999999999999999999999999988778999999999999875 99999997 89999
Q ss_pred EecChhhHhh
Q 000406 889 EIGNHRQLLE 898 (1560)
Q Consensus 889 ~~G~~~~l~~ 898 (1560)
+.|+++++..
T Consensus 249 ~~g~~~~~~~ 258 (274)
T PRK14265 249 EFSPTEQMFG 258 (274)
T ss_pred EeCCHHHHHh
Confidence 9999998864
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=374.10 Aligned_cols=211 Identities=27% Similarity=0.457 Sum_probs=178.9
Q ss_pred EEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCc----cHHHHh
Q 000406 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSL----QVKWLR 748 (1560)
Q Consensus 673 i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~----~~~~lr 748 (1560)
|++ |++++|++ . .+ |+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... +....+
T Consensus 2 l~~-~l~k~~~~---~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 75 (352)
T PRK11144 2 LEL-NFKQQLGD---L-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK 75 (352)
T ss_pred eEE-EEEEEeCC---E-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhh
Confidence 667 99999963 2 23 89999999999999999999999999999999999999999999998643 233456
Q ss_pred ccEEEEecCCcCccc-cHHHHHhcCCCCCCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHHhc
Q 000406 749 TQIGMVGQEPILFAT-SILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMI 827 (1560)
Q Consensus 749 ~~i~~v~Q~~~lf~~-Tv~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARAl~ 827 (1560)
++|+||+|++.+|+. |++|||.++......+++. +.++.+ |++......+.+||||||||++|||||+
T Consensus 76 ~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~---------~~l~~~--gl~~~~~~~~~~LSgGq~qRvalaraL~ 144 (352)
T PRK11144 76 RRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFD---------KIVALL--GIEPLLDRYPGSLSGGEKQRVAIGRALL 144 (352)
T ss_pred CCEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHH---------HHHHHc--CCchhhhCCcccCCHHHHHHHHHHHHHH
Confidence 789999999999975 9999999875322222222 233333 5555566777899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhHhhhc
Q 000406 828 KDPRILLLDEPTSALDSESESIVQQAIDKISV--GRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLERG 900 (1560)
Q Consensus 828 ~~p~illLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l~~~~ 900 (1560)
.+|++|||||||++||+.+++.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++..+.
T Consensus 145 ~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p 220 (352)
T PRK11144 145 TAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASS 220 (352)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCc
Confidence 99999999999999999999999999988743 7899999999998866 9999999999999999999997643
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-39 Score=333.80 Aligned_cols=223 Identities=23% Similarity=0.437 Sum_probs=191.9
Q ss_pred ccEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHH-HHhc
Q 000406 671 GKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVK-WLRT 749 (1560)
Q Consensus 671 g~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~-~lr~ 749 (1560)
+.+..+|+.++|.. +.|+++|||++++||+|++.||||+||||.+.++.|+.+|++|+|.+||.|++.++.. .-|-
T Consensus 3 ~~L~a~~l~K~y~k---r~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArl 79 (243)
T COG1137 3 STLVAENLAKSYKK---RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARL 79 (243)
T ss_pred cEEEehhhhHhhCC---eeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhc
Confidence 35789999999974 4689999999999999999999999999999999999999999999999999999876 4566
Q ss_pred cEEEEecCCcCccc-cHHHHHhcCCCCCCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHHhcc
Q 000406 750 QIGMVGQEPILFAT-SILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIK 828 (1560)
Q Consensus 750 ~i~~v~Q~~~lf~~-Tv~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARAl~~ 828 (1560)
.|||+||||.+|.. ||+|||..-.+.. .+....+.+...+++.++++ .+.......+..||||||+|+.|||||..
T Consensus 80 GigYLpQE~SIFr~LtV~dNi~~vlE~~-~~d~~~~~~~~~l~~LL~ef--~i~hlr~~~a~sLSGGERRR~EIARaLa~ 156 (243)
T COG1137 80 GIGYLPQEASIFRKLTVEDNIMAVLEIR-EKDLKKAERKEELDALLEEF--HITHLRDSKAYSLSGGERRRVEIARALAA 156 (243)
T ss_pred CcccccccchHhhcCcHHHHHHHHHhhh-hcchhHHHHHHHHHHHHHHh--chHHHhcCcccccccchHHHHHHHHHHhc
Confidence 89999999999987 9999998765422 11112223333444555555 56677788899999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCccc-cccCCEEEEEeCCeEEEecChhhHhhh
Q 000406 829 DPRILLLDEPTSALDSESESIVQQAIDKIS-VGRTTIVIAHRLAT-VKNANTIVVLDQGSVVEIGNHRQLLER 899 (1560)
Q Consensus 829 ~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~-i~~~D~i~vl~~G~iv~~G~~~~l~~~ 899 (1560)
+|+.+|||||++++||.+-..|++.++.+. +|-.|++.-|+..+ +.-|||.+++.+|+|...|+|+|+.++
T Consensus 157 ~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n 229 (243)
T COG1137 157 NPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNN 229 (243)
T ss_pred CCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcC
Confidence 999999999999999999999999999884 58899999999876 456999999999999999999999864
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=360.33 Aligned_cols=220 Identities=30% Similarity=0.463 Sum_probs=183.5
Q ss_pred CcccEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCC-----CccEEEECCeecCC--
Q 000406 669 VSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDP-----TKGLITLDGHDLKS-- 741 (1560)
Q Consensus 669 ~~g~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~-----~~G~I~i~g~~i~~-- 741 (1560)
..+.|+++|++++|+. +++|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.++|.++..
T Consensus 13 ~~~~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~ 89 (265)
T PRK14252 13 TQQKSEVNKLNFYYGG---YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILS 89 (265)
T ss_pred CCceEEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccc
Confidence 3567999999999973 3599999999999999999999999999999999999875 79999999987742
Q ss_pred --ccHHHHhccEEEEecCCcCccccHHHHHhcCCCC--CC-----HHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCC
Q 000406 742 --LQVKWLRTQIGMVGQEPILFATSILENVLMGKEN--AT-----MKEAVAACKAASAHSFISELPLGYDTQVGDRGTQL 812 (1560)
Q Consensus 742 --~~~~~lr~~i~~v~Q~~~lf~~Tv~eNi~~g~~~--~~-----~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~L 812 (1560)
.....+++.|+|++|++.+|.+|++|||.++... .. .+++.++++.+++.+ ++....+..+.+|
T Consensus 90 ~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~L 162 (265)
T PRK14252 90 PEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWD-------EVKDRLGDLAFNL 162 (265)
T ss_pred cccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCch-------hhhHHHhCCcccC
Confidence 3345678889999999999999999999875311 11 122223333332211 2334456677899
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCcccccc-CCEEEEEeCCeEEEec
Q 000406 813 SGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIG 891 (1560)
Q Consensus 813 SgGQrQRialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G 891 (1560)
|||||||++|||||+++|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 163 S~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g 242 (265)
T PRK14252 163 SGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFG 242 (265)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999988767999999999999965 9999999999999999
Q ss_pred ChhhHhh
Q 000406 892 NHRQLLE 898 (1560)
Q Consensus 892 ~~~~l~~ 898 (1560)
+++++..
T Consensus 243 ~~~~~~~ 249 (265)
T PRK14252 243 ATDTIFI 249 (265)
T ss_pred CHHHHHh
Confidence 9988754
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=359.75 Aligned_cols=220 Identities=30% Similarity=0.429 Sum_probs=181.0
Q ss_pred cEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCC---ccEEEECCeecCCc-----c
Q 000406 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPT---KGLITLDGHDLKSL-----Q 743 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~---~G~I~i~g~~i~~~-----~ 743 (1560)
.|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.++... +
T Consensus 4 ~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 80 (262)
T PRK09984 4 IIRVEKLAKTFNQ---HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARD 80 (262)
T ss_pred EEEEeeEEEEeCC---eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchh
Confidence 4899999999963 45899999999999999999999999999999999999986 49999999988653 2
Q ss_pred HHHHhccEEEEecCCcCccc-cHHHHHhcCCCCCCH--HH---HHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHH
Q 000406 744 VKWLRTQIGMVGQEPILFAT-SILENVLMGKENATM--KE---AVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQK 817 (1560)
Q Consensus 744 ~~~lr~~i~~v~Q~~~lf~~-Tv~eNi~~g~~~~~~--~~---~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQr 817 (1560)
...++++++|+||++.+|+. |++||+.++...... .. .........+.+.++.+ |+....+..+.+||||||
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~ 158 (262)
T PRK09984 81 IRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRV--GMVHFAHQRVSTLSGGQQ 158 (262)
T ss_pred HHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHc--CCHHHHhCCccccCHHHH
Confidence 34567789999999998875 999999876421100 00 00001111233445544 455556677789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChh
Q 000406 818 QRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKIS--VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHR 894 (1560)
Q Consensus 818 QRialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~ 894 (1560)
||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 159 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~g~~~ 238 (262)
T PRK09984 159 QRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQ 238 (262)
T ss_pred HHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999874 38999999999998765 9999999999999999998
Q ss_pred hH
Q 000406 895 QL 896 (1560)
Q Consensus 895 ~l 896 (1560)
++
T Consensus 239 ~~ 240 (262)
T PRK09984 239 QF 240 (262)
T ss_pred Hh
Confidence 86
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-37 Score=351.86 Aligned_cols=214 Identities=29% Similarity=0.498 Sum_probs=177.0
Q ss_pred EEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHHHhccEE
Q 000406 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIG 752 (1560)
Q Consensus 673 i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~ 752 (1560)
|+++||+++|+. . ..|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. ++.++
T Consensus 2 l~~~~l~~~~~~---~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~--~~~i~ 74 (232)
T PRK10771 2 LKLTDITWLYHH---L--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPS--RRPVS 74 (232)
T ss_pred eEEEEEEEEECC---c--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChh--hccEE
Confidence 789999999963 2 2499999999999999999999999999999999999999999999998765432 46799
Q ss_pred EEecCCcCccc-cHHHHHhcCCCC-CCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHHhccCC
Q 000406 753 MVGQEPILFAT-SILENVLMGKEN-ATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDP 830 (1560)
Q Consensus 753 ~v~Q~~~lf~~-Tv~eNi~~g~~~-~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARAl~~~p 830 (1560)
|++|++.+|.+ |+.||+.++... ..... .....+.+.++.+ |++..+......||||||||++||||++++|
T Consensus 75 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~----~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~~~p 148 (232)
T PRK10771 75 MLFQENNLFSHLTVAQNIGLGLNPGLKLNA----AQREKLHAIARQM--GIEDLLARLPGQLSGGQRQRVALARCLVREQ 148 (232)
T ss_pred EEecccccccCCcHHHHHhcccccccCCCH----HHHHHHHHHHHHc--CcHHHHhCCcccCCHHHHHHHHHHHHHhcCC
Confidence 99999999986 999999875311 11000 0011122233333 4444556666789999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhHhhh
Q 000406 831 RILLLDEPTSALDSESESIVQQAIDKIS--VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLER 899 (1560)
Q Consensus 831 ~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l~~~ 899 (1560)
++|||||||++||+.+.+.+.+.|+++. .|+|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 149 ~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~ 220 (232)
T PRK10771 149 PILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSG 220 (232)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999998873 38899999999999876 999999999999999999888653
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=337.37 Aligned_cols=170 Identities=32% Similarity=0.603 Sum_probs=157.8
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhhceE
Q 000406 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTA 1393 (1560)
Q Consensus 1314 I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~~I~ 1393 (1560)
++++||+++|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+ ..+|+.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (173)
T cd03230 1 IEVRNLSKRYGK---KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIG 76 (173)
T ss_pred CEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEE
Confidence 478999999963 35999999999999999999999999999999999999999999999999998766 67788999
Q ss_pred EEcCCCCCCCc-cHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHccCCC
Q 000406 1394 LVGQEPALFAG-TIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSR 1472 (1560)
Q Consensus 1394 ~VpQdp~LF~g-TIreNL~~g~~~~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLARALLr~p~ 1472 (1560)
|+||++.+|.+ |++||+. ||||||||++|||||+++|+
T Consensus 77 ~~~q~~~~~~~~tv~~~~~-----------------------------------------LS~G~~qrv~laral~~~p~ 115 (173)
T cd03230 77 YLPEEPSLYENLTVRENLK-----------------------------------------LSGGMKQRLALAQALLHDPE 115 (173)
T ss_pred EEecCCccccCCcHHHHhh-----------------------------------------cCHHHHHHHHHHHHHHcCCC
Confidence 99999999886 9999983 99999999999999999999
Q ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHhc-CCceEEEEecChHHHhh-cCEEEEEeCCEE
Q 000406 1473 VLLLDEASSALDLESEKHVQDALRKVS-KRATTIVVAHRLSTIRE-ANMIAVVRDGAV 1528 (1560)
Q Consensus 1473 ILILDEaTSaLD~~Te~~I~~~L~~~~-~~~TvI~IAHRlsti~~-aDrIlVLd~G~I 1528 (1560)
||||||||++||+.+.+.+.+.|++.. ++.|+|+|||+++.+.. ||+|++|++|++
T Consensus 116 illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 116 LLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 999999999999999999999999875 45899999999999884 999999999974
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-38 Score=371.99 Aligned_cols=227 Identities=21% Similarity=0.334 Sum_probs=182.5
Q ss_pred cEEEEEEEEEcCCC-CCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCC----CCccEEEECCeecCCccHHH
Q 000406 672 KIEFKGVTFAYPSR-PETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYD----PTKGLITLDGHDLKSLQVKW 746 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~-~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~----~~~G~I~i~g~~i~~~~~~~ 746 (1560)
-|+++|++++|+.. +...+|+||||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.++|+++..++...
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 37999999999642 22468999999999999999999999999999999999986 58999999999998877654
Q ss_pred H----hccEEEEecCCc--Ccc-ccHHHHHhcCCC---CC-----CHHHHHHHHHHhhhHHHHHhCCCCCC---cccCCC
Q 000406 747 L----RTQIGMVGQEPI--LFA-TSILENVLMGKE---NA-----TMKEAVAACKAASAHSFISELPLGYD---TQVGDR 808 (1560)
Q Consensus 747 l----r~~i~~v~Q~~~--lf~-~Tv~eNi~~g~~---~~-----~~~~~~~~~~~~~~~~~i~~l~~gl~---t~~~~~ 808 (1560)
+ ++.|+||+|+|. +.+ .||.+|+..... .. ...+. ...+.+.++.+ |++ ......
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~L~~~--gL~~~~~~~~~~ 155 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWR-----KRRAIELLHRV--GIKDHKDAMRSF 155 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHH-----HHHHHHHHHHC--CCCChHHHHhCC
Confidence 3 347999999996 333 489999864210 00 00111 11223344444 443 234567
Q ss_pred CCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCcccccc-CCEEEEEeCC
Q 000406 809 GTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKIS--VGRTTIVIAHRLATVKN-ANTIVVLDQG 885 (1560)
Q Consensus 809 g~~LSgGQrQRialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~D~i~vl~~G 885 (1560)
+.+|||||||||+|||||+.+|+||||||||++||+.+...+.+.|+++. .|.|+|+|||+++.+.. ||+|++|++|
T Consensus 156 p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G 235 (330)
T PRK15093 156 PYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCG 235 (330)
T ss_pred chhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 78999999999999999999999999999999999999999999999874 38999999999999976 9999999999
Q ss_pred eEEEecChhhHhhhc-chHHH
Q 000406 886 SVVEIGNHRQLLERG-GAYHD 905 (1560)
Q Consensus 886 ~iv~~G~~~~l~~~~-~~~~~ 905 (1560)
+|++.|+++++.... ..|.+
T Consensus 236 ~ive~g~~~~i~~~p~~~y~~ 256 (330)
T PRK15093 236 QTVETAPSKELVTTPHHPYTQ 256 (330)
T ss_pred EEEEECCHHHHHhCCCCHHHH
Confidence 999999999987642 34544
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=345.36 Aligned_cols=191 Identities=25% Similarity=0.404 Sum_probs=163.4
Q ss_pred cEEEEEEEEEcCCC-CCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccC---CCccEEEECCEecCCCCHHHH
Q 000406 1313 GIELKMVTFTYPSR-PEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYD---PNQGKVMIEGVDLREINVKWL 1388 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~-~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~---p~~G~I~IdGvdi~~i~l~~L 1388 (1560)
.+.++||+|.|+.. .+.++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||.++...+ ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKY 81 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhh
Confidence 47899999999853 34579999999999999999999999999999999999999 89999999999998765 456
Q ss_pred hhceEEEcCCCCCCC-ccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHH
Q 000406 1389 RKQTALVGQEPALFA-GTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAI 1467 (1560)
Q Consensus 1389 R~~I~~VpQdp~LF~-gTIreNL~~g~~~~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLARAL 1467 (1560)
|+.++|+||++.+|. .|++|||.++.. .. .+ +....||||||||++|||||
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~------~~------------------~~----~~~~~LS~Ge~qrl~laral 133 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALR------CK------------------GN----EFVRGISGGERKRVSIAEAL 133 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhh------hc------------------cc----cchhhCCHHHHHHHHHHHHH
Confidence 889999999998887 599999976421 00 12 23347999999999999999
Q ss_pred ccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CceEEEEe-cChHHH-hhcCEEEEEeCCEEEEec
Q 000406 1468 LKGSRVLLLDEASSALDLESEKHVQDALRKVSK--RATTIVVA-HRLSTI-REANMIAVVRDGAVVEYG 1532 (1560)
Q Consensus 1468 Lr~p~ILILDEaTSaLD~~Te~~I~~~L~~~~~--~~TvI~IA-HRlsti-~~aDrIlVLd~G~IvE~G 1532 (1560)
+++|+||||||||++||+++.+.+.+.|++..+ ++|+|+++ |+++.+ ..||+|++|++|++++.|
T Consensus 134 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 134 VSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred hhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 999999999999999999999999999998754 46766655 555666 459999999999998865
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=360.08 Aligned_cols=219 Identities=31% Similarity=0.495 Sum_probs=179.7
Q ss_pred cEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCC-----CccEEEECCeecCC--ccH
Q 000406 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDP-----TKGLITLDGHDLKS--LQV 744 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~-----~~G~I~i~g~~i~~--~~~ 744 (1560)
.|+++||+++|++ ..+|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++.. .+.
T Consensus 4 ~l~i~~v~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~ 80 (258)
T PRK14241 4 RIDVKDLNIYYGS---FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP 80 (258)
T ss_pred cEEEeeEEEEECC---EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccCh
Confidence 4899999999963 3589999999999999999999999999999999999974 79999999999853 344
Q ss_pred HHHhccEEEEecCCcCccc-cHHHHHhcCCCC---CCHHHHHHHHHHhhhHHHHHhCCC--CCCcccCCCCCCCChHHHH
Q 000406 745 KWLRTQIGMVGQEPILFAT-SILENVLMGKEN---ATMKEAVAACKAASAHSFISELPL--GYDTQVGDRGTQLSGGQKQ 818 (1560)
Q Consensus 745 ~~lr~~i~~v~Q~~~lf~~-Tv~eNi~~g~~~---~~~~~~~~~~~~~~~~~~i~~l~~--gl~t~~~~~g~~LSgGQrQ 818 (1560)
..+++.|+|++|++.+|.. |++||+.++... ...++..+ .+.+.++.+.. ++.......+.+|||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~q 155 (258)
T PRK14241 81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDE-----LVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQ 155 (258)
T ss_pred HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHH-----HHHHHHHHcCCchhhhhHhhCCcccCCHHHHH
Confidence 5678889999999999874 999999865311 11111111 11122222211 1123456677899999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCcccccc-CCEEEEEe------CCeEEEec
Q 000406 819 RIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKN-ANTIVVLD------QGSVVEIG 891 (1560)
Q Consensus 819 RialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~D~i~vl~------~G~iv~~G 891 (1560)
|++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|+ +|+|++.|
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~~ 235 (258)
T PRK14241 156 RLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEID 235 (258)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEecC
Confidence 999999999999999999999999999999999999988667999999999999865 99999997 89999999
Q ss_pred ChhhHhh
Q 000406 892 NHRQLLE 898 (1560)
Q Consensus 892 ~~~~l~~ 898 (1560)
++++++.
T Consensus 236 ~~~~~~~ 242 (258)
T PRK14241 236 DTEKIFS 242 (258)
T ss_pred CHHHHHh
Confidence 9988864
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-38 Score=353.73 Aligned_cols=214 Identities=24% Similarity=0.397 Sum_probs=172.2
Q ss_pred EEEEEEEEEcCCCC-CccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCC---CCccEEEECCeecCCccHHHHh
Q 000406 673 IEFKGVTFAYPSRP-ETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYD---PTKGLITLDGHDLKSLQVKWLR 748 (1560)
Q Consensus 673 i~~~~vs~~y~~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~---~~~G~I~i~g~~i~~~~~~~lr 748 (1560)
++++||+++|++.+ .+++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. ..+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~---~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKP---DQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECCh---HHhc
Confidence 57999999998542 3579999999999999999999999999999999999999 999999999998752 4567
Q ss_pred ccEEEEecCCcCccc-cHHHHHhcCCCCCCHHHHHHHHHHhhhHH-HHHhCCCCCCcccCCCCCCCChHHHHHHHHHHHh
Q 000406 749 TQIGMVGQEPILFAT-SILENVLMGKENATMKEAVAACKAASAHS-FISELPLGYDTQVGDRGTQLSGGQKQRIALARAM 826 (1560)
Q Consensus 749 ~~i~~v~Q~~~lf~~-Tv~eNi~~g~~~~~~~~~~~~~~~~~~~~-~i~~l~~gl~t~~~~~g~~LSgGQrQRialARAl 826 (1560)
++++|++|++.+|++ |++||+.++...................+ .++.+ ++.........+||||||||++|||||
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~laral 158 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDL--ALTRIGGNLVKGISGGERRRVSIAVQL 158 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhh--cchhhhcccccCcCHHHHHHHHHHHHH
Confidence 889999999999987 99999987522110000000011111111 23332 444445566789999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCc-cccc-cCCEEEEEeCCeEEEec
Q 000406 827 IKDPRILLLDEPTSALDSESESIVQQAIDKIS-VGRTTIVIAHRL-ATVK-NANTIVVLDQGSVVEIG 891 (1560)
Q Consensus 827 ~~~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l-~~i~-~~D~i~vl~~G~iv~~G 891 (1560)
+++|++|||||||++||+.+...+.+.|+++. +++|+|++||++ +.+. .||+|++|++|++++.|
T Consensus 159 ~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 159 LWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999998874 488999999998 4665 59999999999999865
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=359.61 Aligned_cols=217 Identities=28% Similarity=0.448 Sum_probs=180.7
Q ss_pred cEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCee-----cCCccHHH
Q 000406 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHD-----LKSLQVKW 746 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~-----i~~~~~~~ 746 (1560)
.|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ +...+...
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~ 82 (258)
T PRK11701 6 LLSVRGLTKLYGP---RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAE 82 (258)
T ss_pred eEEEeeeEEEcCC---ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHH
Confidence 4899999999964 358999999999999999999999999999999999999999999999998 77665443
Q ss_pred ----HhccEEEEecCCc--Ccc-ccHHHHHhcCC---CCCCHHHHHHHHHHhhhHHHHHhCCCCCC-cccCCCCCCCChH
Q 000406 747 ----LRTQIGMVGQEPI--LFA-TSILENVLMGK---ENATMKEAVAACKAASAHSFISELPLGYD-TQVGDRGTQLSGG 815 (1560)
Q Consensus 747 ----lr~~i~~v~Q~~~--lf~-~Tv~eNi~~g~---~~~~~~~~~~~~~~~~~~~~i~~l~~gl~-t~~~~~g~~LSgG 815 (1560)
.++.++||+|++. ++. .|+.+||.+.. ......+.. ..+.++++.+ |++ +..+..+.+||||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LS~G 155 (258)
T PRK11701 83 RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIR-----ATAGDWLERV--EIDAARIDDLPTTFSGG 155 (258)
T ss_pred HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHH-----HHHHHHHHHc--CCChhHHhCCCccCCHH
Confidence 3567999999984 444 48899986421 011111211 1234556666 343 4567888999999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCcccccc-CCEEEEEeCCeEEEecC
Q 000406 816 QKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKIS--VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGN 892 (1560)
Q Consensus 816 QrQRialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~ 892 (1560)
||||++|||||+.+|+||||||||++||+.+.+.+.+.|+++. .|.|+|+|||+++.+.. ||+|++|++|++++.|+
T Consensus 156 q~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~ 235 (258)
T PRK11701 156 MQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGL 235 (258)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999998874 38899999999999975 99999999999999999
Q ss_pred hhhHhh
Q 000406 893 HRQLLE 898 (1560)
Q Consensus 893 ~~~l~~ 898 (1560)
++++..
T Consensus 236 ~~~~~~ 241 (258)
T PRK11701 236 TDQVLD 241 (258)
T ss_pred HHHHhc
Confidence 988764
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=358.12 Aligned_cols=217 Identities=30% Similarity=0.465 Sum_probs=179.2
Q ss_pred cEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCC--C---CccEEEECCeecCC--ccH
Q 000406 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYD--P---TKGLITLDGHDLKS--LQV 744 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~--~---~~G~I~i~g~~i~~--~~~ 744 (1560)
.|+++||+++|+. +++|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.++|.++.. .+.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14255 5 IITSSDVHLFYGK---FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV 81 (252)
T ss_pred eEEEEeEEEEECC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccH
Confidence 4899999999973 458999999999999999999999999999999999875 4 59999999998864 234
Q ss_pred HHHhccEEEEecCCcCccccHHHHHhcCCC--CC-CHH----HHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHH
Q 000406 745 KWLRTQIGMVGQEPILFATSILENVLMGKE--NA-TMK----EAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQK 817 (1560)
Q Consensus 745 ~~lr~~i~~v~Q~~~lf~~Tv~eNi~~g~~--~~-~~~----~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQr 817 (1560)
..+++.++|++|++.+|+.|+++|+.++.. .. ..+ ++.+.++..++. .++....+..+.+||||||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~i~~~~~~~~~~LS~Gq~ 154 (252)
T PRK14255 82 VQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIW-------DEVKDHLHESALSLSGGQQ 154 (252)
T ss_pred HHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCc-------cchhhHHhcCcccCCHHHH
Confidence 456788999999999998999999987521 11 111 111122222211 1222345566789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhH
Q 000406 818 QRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQL 896 (1560)
Q Consensus 818 QRialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l 896 (1560)
||++|||||+++|+||||||||++||+.+++.+.+.|+++.++.|+|+|||+++.+.. ||+|++|++|++++.|++.++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14255 155 QRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQM 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988667899999999999875 999999999999999998887
Q ss_pred hh
Q 000406 897 LE 898 (1560)
Q Consensus 897 ~~ 898 (1560)
..
T Consensus 235 ~~ 236 (252)
T PRK14255 235 FL 236 (252)
T ss_pred hc
Confidence 64
|
|
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=335.53 Aligned_cols=171 Identities=57% Similarity=0.894 Sum_probs=161.6
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCCHHHHhhceE
Q 000406 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTA 1393 (1560)
Q Consensus 1314 I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~l~~LR~~I~ 1393 (1560)
|+++|++++|+.. ..++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+|+.++
T Consensus 1 l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (171)
T cd03228 1 IEFKNVSFSYPGR-PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIA 79 (171)
T ss_pred CEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEE
Confidence 5789999999643 235999999999999999999999999999999999999999999999999998888888899999
Q ss_pred EEcCCCCCCCccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 000406 1394 LVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRV 1473 (1560)
Q Consensus 1394 ~VpQdp~LF~gTIreNL~~g~~~~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLARALLr~p~I 1473 (1560)
|+||++.+|+.|+.||+ ||||||||++|||||+++|++
T Consensus 80 ~~~~~~~~~~~t~~e~l------------------------------------------LS~G~~~rl~la~al~~~p~l 117 (171)
T cd03228 80 YVPQDPFLFSGTIRENI------------------------------------------LSGGQRQRIAIARALLRDPPI 117 (171)
T ss_pred EEcCCchhccchHHHHh------------------------------------------hCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999998 999999999999999999999
Q ss_pred EEEeCCCcCCCHHHHHHHHHHHHHhcCCceEEEEecChHHHhhcCEEEEEeCCE
Q 000406 1474 LLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIREANMIAVVRDGA 1527 (1560)
Q Consensus 1474 LILDEaTSaLD~~Te~~I~~~L~~~~~~~TvI~IAHRlsti~~aDrIlVLd~G~ 1527 (1560)
|||||||++||+.+...+.+.|++..+++|+|++||+++.+..||++++|++|+
T Consensus 118 lllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 118 LILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred EEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 999999999999999999999998877799999999999998899999999985
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=356.29 Aligned_cols=214 Identities=24% Similarity=0.353 Sum_probs=175.5
Q ss_pred EEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCC--CCCccEEEECCeecCCccHHHH-hc
Q 000406 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFY--DPTKGLITLDGHDLKSLQVKWL-RT 749 (1560)
Q Consensus 673 i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~--~~~~G~I~i~g~~i~~~~~~~l-r~ 749 (1560)
|+++|++++|+. .++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|.++...+.... +.
T Consensus 1 l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (243)
T TIGR01978 1 LKIKDLHVSVED---KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARA 77 (243)
T ss_pred CeEeeEEEEECC---EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhcc
Confidence 578999999963 45899999999999999999999999999999999994 7999999999999987766543 45
Q ss_pred cEEEEecCCcCccc-cHHHHHhcCCCCC---------CHHHHHHHHHHhhhHHHHHhCCCCCCc-ccCCCCC-CCChHHH
Q 000406 750 QIGMVGQEPILFAT-SILENVLMGKENA---------TMKEAVAACKAASAHSFISELPLGYDT-QVGDRGT-QLSGGQK 817 (1560)
Q Consensus 750 ~i~~v~Q~~~lf~~-Tv~eNi~~g~~~~---------~~~~~~~~~~~~~~~~~i~~l~~gl~t-~~~~~g~-~LSgGQr 817 (1560)
.++||+|++.+|++ |++||+.+..... ..++.. ..+.+.++.+ |+.. ..+.... +||||||
T Consensus 78 ~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~~LS~G~~ 150 (243)
T TIGR01978 78 GLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFL-----KLLKAKLALL--GMDEEFLNRSVNEGFSGGEK 150 (243)
T ss_pred ceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHH-----HHHHHHHHHc--CCchhhcccccccCcCHHHH
Confidence 69999999999886 9999997642110 111111 1122334443 4432 2344444 5999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCcccccc--CCEEEEEeCCeEEEecChh
Q 000406 818 QRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKIS-VGRTTIVIAHRLATVKN--ANTIVVLDQGSVVEIGNHR 894 (1560)
Q Consensus 818 QRialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~--~D~i~vl~~G~iv~~G~~~ 894 (1560)
||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. +++|||+|||+++.+.. ||+|++|++|++++.|+++
T Consensus 151 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~ 230 (243)
T TIGR01978 151 KRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVE 230 (243)
T ss_pred HHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCHH
Confidence 99999999999999999999999999999999999999874 47999999999999875 7999999999999999887
Q ss_pred hH
Q 000406 895 QL 896 (1560)
Q Consensus 895 ~l 896 (1560)
++
T Consensus 231 ~~ 232 (243)
T TIGR01978 231 LA 232 (243)
T ss_pred Hh
Confidence 54
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-37 Score=358.27 Aligned_cols=221 Identities=24% Similarity=0.401 Sum_probs=179.5
Q ss_pred cEEEEEEEEEcCCC------CCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHH
Q 000406 672 KIEFKGVTFAYPSR------PETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVK 745 (1560)
Q Consensus 672 ~i~~~~vs~~y~~~------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~ 745 (1560)
.|+++||+++|+.. ...++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 48999999999631 124699999999999999999999999999999999999999999999999998755555
Q ss_pred HHhccEEEEecCCc--Cccc-cHHHHHhcCCC---CCCHHHHHHHHHHhhhHHHHHhCCCCCC-cccCCCCCCCChHHHH
Q 000406 746 WLRTQIGMVGQEPI--LFAT-SILENVLMGKE---NATMKEAVAACKAASAHSFISELPLGYD-TQVGDRGTQLSGGQKQ 818 (1560)
Q Consensus 746 ~lr~~i~~v~Q~~~--lf~~-Tv~eNi~~g~~---~~~~~~~~~~~~~~~~~~~i~~l~~gl~-t~~~~~g~~LSgGQrQ 818 (1560)
..+++|+||+|++. +++. |+.+|+.+... .....+..+ .+.+.++.+ |++ ........+|||||||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LS~G~~q 156 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREK-----QIIETLRQV--GLLPDHASYYPHMLAPGQKQ 156 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHH-----HHHHHHHHc--CCChHHHhcCchhcCHHHHH
Confidence 56678999999985 4444 89999875321 111111111 112233333 332 2234456789999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhh
Q 000406 819 RIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKIS--VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQ 895 (1560)
Q Consensus 819 RialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~ 895 (1560)
|++|||||+.+|+||||||||++||+.+.+.+.+.|+++. .|+|||+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 157 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 236 (267)
T PRK15112 157 RLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTAD 236 (267)
T ss_pred HHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHH
Confidence 9999999999999999999999999999999999999874 38999999999999986 99999999999999999999
Q ss_pred Hhhh
Q 000406 896 LLER 899 (1560)
Q Consensus 896 l~~~ 899 (1560)
+...
T Consensus 237 ~~~~ 240 (267)
T PRK15112 237 VLAS 240 (267)
T ss_pred HhcC
Confidence 8764
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=363.70 Aligned_cols=219 Identities=30% Similarity=0.456 Sum_probs=180.4
Q ss_pred ccEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCC-----CCccEEEECCeecCCc--c
Q 000406 671 GKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYD-----PTKGLITLDGHDLKSL--Q 743 (1560)
Q Consensus 671 g~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~-----~~~G~I~i~g~~i~~~--~ 743 (1560)
..|+++|++++|+. ..+|+|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.++|.++... +
T Consensus 38 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~ 114 (286)
T PRK14275 38 PHVVAKNFSIYYGE---FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114 (286)
T ss_pred eEEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccc
Confidence 35899999999963 358999999999999999999999999999999999864 4999999999988643 3
Q ss_pred HHHHhccEEEEecCCcCccccHHHHHhcCCCC--C-CHH----HHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHH
Q 000406 744 VKWLRTQIGMVGQEPILFATSILENVLMGKEN--A-TMK----EAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQ 816 (1560)
Q Consensus 744 ~~~lr~~i~~v~Q~~~lf~~Tv~eNi~~g~~~--~-~~~----~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQ 816 (1560)
...+|++|+||+|++.+|+.|++|||.++... . ... .+.++++..++.+ ++.......+..|||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LSgGq 187 (286)
T PRK14275 115 EVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWD-------EVSDRLDKNALGLSGGQ 187 (286)
T ss_pred hHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCcc-------chhhHhhCChhhCCHHH
Confidence 34567889999999999988999999875321 1 111 1112222222111 11223456678999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhh
Q 000406 817 KQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQ 895 (1560)
Q Consensus 817 rQRialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~ 895 (1560)
|||++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|||++||+++.+.. ||+|++|++|++++.|++++
T Consensus 188 ~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~ 267 (286)
T PRK14275 188 QQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQ 267 (286)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999988667899999999999865 99999999999999999988
Q ss_pred Hhhh
Q 000406 896 LLER 899 (1560)
Q Consensus 896 l~~~ 899 (1560)
+...
T Consensus 268 ~~~~ 271 (286)
T PRK14275 268 LFTN 271 (286)
T ss_pred HHhC
Confidence 8653
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=338.17 Aligned_cols=172 Identities=43% Similarity=0.664 Sum_probs=159.6
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCEecCCCC--HHHHhhc
Q 000406 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREIN--VKWLRKQ 1391 (1560)
Q Consensus 1314 I~~~nVsf~Y~~~~~~~vL~~vSf~I~~GE~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~IdGvdi~~i~--l~~LR~~ 1391 (1560)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++..++ ...+++.
T Consensus 1 i~~~~l~~~~~~---~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (178)
T cd03229 1 LELKNVSKRYGQ---KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRR 77 (178)
T ss_pred CEEEEEEEEECC---eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhc
Confidence 578999999963 35999999999999999999999999999999999999999999999999998876 5678899
Q ss_pred eEEEcCCCCCCC-ccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHccC
Q 000406 1392 TALVGQEPALFA-GTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKG 1470 (1560)
Q Consensus 1392 I~~VpQdp~LF~-gTIreNL~~g~~~~sd~eI~~al~~a~l~~~I~~Lp~Gldt~Vge~G~~LSGGQrQRLaLARALLr~ 1470 (1560)
++|+||+|.+|. .|++||+.+. ||||||||++|||||+++
T Consensus 78 i~~~~q~~~~~~~~t~~~~l~~~---------------------------------------lS~G~~qr~~la~al~~~ 118 (178)
T cd03229 78 IGMVFQDFALFPHLTVLENIALG---------------------------------------LSGGQQQRVALARALAMD 118 (178)
T ss_pred EEEEecCCccCCCCCHHHheeec---------------------------------------CCHHHHHHHHHHHHHHCC
Confidence 999999999886 5999999763 999999999999999999
Q ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CceEEEEecChHHHhh-cCEEEEEeCCE
Q 000406 1471 SRVLLLDEASSALDLESEKHVQDALRKVSK--RATTIVVAHRLSTIRE-ANMIAVVRDGA 1527 (1560)
Q Consensus 1471 p~ILILDEaTSaLD~~Te~~I~~~L~~~~~--~~TvI~IAHRlsti~~-aDrIlVLd~G~ 1527 (1560)
|+++||||||++||+.+...+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|+
T Consensus 119 p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 119 PDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 999999999999999999999999998764 5899999999999985 99999999985
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=358.82 Aligned_cols=218 Identities=28% Similarity=0.464 Sum_probs=181.2
Q ss_pred ccEEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCC-----ccEEEECCeecCC--cc
Q 000406 671 GKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPT-----KGLITLDGHDLKS--LQ 743 (1560)
Q Consensus 671 g~i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~-----~G~I~i~g~~i~~--~~ 743 (1560)
+.|+++|++++|+. ..+|+|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|+++.. .+
T Consensus 6 ~~l~~~nl~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~ 82 (261)
T PRK14258 6 PAIKVNNLSFYYDT---QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVN 82 (261)
T ss_pred ceEEEeeEEEEeCC---eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccc
Confidence 36999999999963 35899999999999999999999999999999999999985 8999999998753 34
Q ss_pred HHHHhccEEEEecCCcCccccHHHHHhcCCCC---CCHH----HHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHH
Q 000406 744 VKWLRTQIGMVGQEPILFATSILENVLMGKEN---ATMK----EAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQ 816 (1560)
Q Consensus 744 ~~~lr~~i~~v~Q~~~lf~~Tv~eNi~~g~~~---~~~~----~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQ 816 (1560)
...+++.++|++|++.+|+.|++||+.++... .... .+.++++..++.++ +....+..+.+|||||
T Consensus 83 ~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LSgGq 155 (261)
T PRK14258 83 LNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDE-------IKHKIHKSALDLSGGQ 155 (261)
T ss_pred hHHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcch-------hhhHhcCCcccCCHHH
Confidence 45678889999999999999999999864211 0111 12222323322211 2234566778999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCcccccc-CCEEEEEeC-----CeEE
Q 000406 817 KQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKIS--VGRTTIVIAHRLATVKN-ANTIVVLDQ-----GSVV 888 (1560)
Q Consensus 817 rQRialARAl~~~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~D~i~vl~~-----G~iv 888 (1560)
|||++|||||+++|+||||||||++||+.+...+.+.|+++. .++|+|+|||+++.+.. ||+|++|++ |+++
T Consensus 156 ~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~ 235 (261)
T PRK14258 156 QQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLV 235 (261)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEE
Confidence 999999999999999999999999999999999999998863 48999999999999876 999999999 9999
Q ss_pred EecChhhHhh
Q 000406 889 EIGNHRQLLE 898 (1560)
Q Consensus 889 ~~G~~~~l~~ 898 (1560)
+.|+++++..
T Consensus 236 ~~~~~~~~~~ 245 (261)
T PRK14258 236 EFGLTKKIFN 245 (261)
T ss_pred EeCCHHHHHh
Confidence 9999999865
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=355.08 Aligned_cols=214 Identities=31% Similarity=0.501 Sum_probs=180.8
Q ss_pred EEEEEEEEEcCCCCCccccccceeEecCCCEEEEecCCCCChHHHHHHHhcCCCCCccEEEECCeecCCccHHHHhccEE
Q 000406 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIG 752 (1560)
Q Consensus 673 i~~~~vs~~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~ 752 (1560)
|+++|++++|+. +++|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+. .++.++
T Consensus 1 i~i~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~ 75 (237)
T TIGR00968 1 IEIANISKRFGS---FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIG 75 (237)
T ss_pred CEEEEEEEEECC---eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEE
Confidence 578999999974 359999999999999999999999999999999999999999999999999876543 467899
Q ss_pred EEecCCcCccc-cHHHHHhcCCCC--CCHHHHHHHHHHhhhHHHHHhCCCCCCcccCCCCCCCChHHHHHHHHHHHhccC
Q 000406 753 MVGQEPILFAT-SILENVLMGKEN--ATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKD 829 (1560)
Q Consensus 753 ~v~Q~~~lf~~-Tv~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGQrQRialARAl~~~ 829 (1560)
||||++.+|++ |++||+.++... ...... ...+.+.++.+ |+....+....+|||||+||++|||||+++
T Consensus 76 ~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~lS~G~~qrl~laral~~~ 148 (237)
T TIGR00968 76 FVFQHYALFKHLTVRDNIAFGLEIRKHPKAKI-----KARVEELLELV--QLEGLGDRYPNQLSGGQRQRVALARALAVE 148 (237)
T ss_pred EEecChhhccCCcHHHHHHhHHHhcCCCHHHH-----HHHHHHHHHHc--CCHhHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999999976 999999875421 111111 11223455555 333445566679999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecCcccccc-CCEEEEEeCCeEEEecChhhHhh
Q 000406 830 PRILLLDEPTSALDSESESIVQQAIDKISV--GRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLE 898 (1560)
Q Consensus 830 p~illLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~D~i~vl~~G~iv~~G~~~~l~~ 898 (1560)
|+++||||||++||+++++.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 149 p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 220 (237)
T TIGR00968 149 PQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYD 220 (237)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHc
Confidence 999999999999999999999999998743 7999999999999866 99999999999999999988864
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1560 | ||||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 0.0 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 0.0 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 0.0 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 3e-86 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 1e-69 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 9e-86 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 5e-69 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 2e-65 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 8e-53 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 2e-64 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 2e-54 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 2e-64 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 7e-56 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 9e-61 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 7e-46 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 2e-58 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 8e-48 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 6e-54 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 4e-40 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 7e-54 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 4e-40 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 7e-54 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 4e-40 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 1e-53 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 9e-40 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 1e-53 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 7e-43 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 2e-53 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 4e-40 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 1e-52 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 7e-39 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 1e-52 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 7e-39 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 5e-51 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 4e-35 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 7e-51 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-37 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 1e-49 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-36 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 2e-48 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 6e-38 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-48 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 4e-35 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 4e-47 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 9e-35 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 1e-45 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 1e-42 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 9e-20 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 5e-17 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 2e-18 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 8e-11 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 2e-18 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 2e-10 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 2e-18 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 1e-11 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 4e-18 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 4e-18 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 1e-15 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 4e-18 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 5e-10 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 5e-18 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 8e-12 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 5e-18 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 6e-18 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 2e-10 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 3e-17 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 4e-11 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 3e-17 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 4e-11 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 7e-17 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 3e-11 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 8e-17 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 6e-11 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 8e-16 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 4e-12 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 9e-16 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 5e-12 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 1e-15 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 1e-11 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 1e-15 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 1e-11 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 4e-15 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 9e-13 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 6e-15 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 9e-13 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 6e-15 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 9e-13 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 1e-14 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 1e-06 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 2e-14 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 5e-11 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 2e-14 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 2e-12 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 2e-14 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 4e-11 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 2e-14 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 3e-05 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 4e-14 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 1e-12 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 5e-14 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 5e-11 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 6e-14 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 2e-04 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 9e-14 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 8e-12 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 1e-13 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 2e-10 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 1e-13 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 8e-07 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 2e-13 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 1e-06 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 2e-13 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 2e-11 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 3e-13 | ||
| 1g29_1 | 372 | Malk Length = 372 | 5e-13 | ||
| 1g29_1 | 372 | Malk Length = 372 | 6e-10 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 7e-13 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 7e-13 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 2e-06 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 1e-12 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 1e-12 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 3e-12 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 3e-12 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 2e-10 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 5e-12 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 1e-04 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 8e-12 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 9e-07 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 9e-12 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 3e-05 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 3e-11 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 3e-10 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 8e-11 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 4e-10 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 7e-04 | ||
| 4fwi_B | 334 | Crystal Structure Of The Nucleotide-binding Domain | 6e-08 | ||
| 4fwi_B | 334 | Crystal Structure Of The Nucleotide-binding Domain | 5e-05 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 7e-07 | ||
| 2d3w_A | 248 | Crystal Structure Of Escherichia Coli Sufc, An Atpa | 8e-07 | ||
| 2zu0_C | 267 | Crystal Structure Of Sufc-Sufd Complex Involved In | 9e-07 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 1e-06 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 2e-04 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 2e-06 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 2e-04 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 2e-06 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 2e-06 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 3e-06 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 2e-04 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 4e-06 | ||
| 2vf7_A | 842 | Crystal Structure Of Uvra2 From Deinococcus Radiodu | 5e-06 | ||
| 3pih_A | 916 | T. Maritima Uvra In Complex With Fluorescein-Modifi | 1e-05 | ||
| 2iw3_A | 986 | Elongation Factor 3 In Complex With Adp Length = 98 | 2e-05 | ||
| 2ix8_A | 976 | Model For Eef3 Bound To An 80s Ribosome Length = 97 | 3e-05 | ||
| 4dbl_C | 249 | Crystal Structure Of E159q Mutant Of Btucdf Length | 3e-05 | ||
| 4fi3_C | 249 | Structure Of Vitamin B12 Transporter Btucd-F In A N | 3e-05 | ||
| 2iwh_A | 986 | Structure Of Yeast Elongation Factor 3 In Complex W | 3e-05 | ||
| 2qi9_C | 249 | Abc-Transporter Btucd In Complex With Its Periplasm | 6e-05 | ||
| 1l7v_C | 249 | Bacterial Abc Transporter Involved In B12 Uptake Le | 8e-05 | ||
| 2ihy_A | 279 | Structure Of The Staphylococcus Aureus Putative Atp | 1e-04 | ||
| 3j16_B | 608 | Models Of Ribosome-Bound Dom34p And Rli1p And Their | 2e-04 | ||
| 3ozx_A | 538 | Crystal Structure Of Abce1 Of Sulfolubus Solfataric | 3e-04 | ||
| 3uwx_A | 972 | Crystal Structure Of Uvra-Uvrb Complex Length = 972 | 4e-04 | ||
| 3ux8_A | 670 | Crystal Structure Of Uvra Length = 670 | 4e-04 | ||
| 2r6f_A | 972 | Crystal Structure Of Bacillus Stearothermophilus Uv | 4e-04 | ||
| 1sgw_A | 214 | Putative Abc Transporter (Atp-Binding Protein) From | 6e-04 |
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334 | Back alignment and structure |
|
| >pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248 | Back alignment and structure |
|
| >pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans Length = 842 | Back alignment and structure |
|
| >pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna Length = 916 | Back alignment and structure |
|
| >pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp Length = 986 | Back alignment and structure |
|
| >pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome Length = 976 | Back alignment and structure |
|
| >pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249 | Back alignment and structure |
|
| >pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A Nucleotide-Bound State Length = 249 | Back alignment and structure |
|
| >pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986 | Back alignment and structure |
|
| >pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic Binding Protein Btuf Length = 249 | Back alignment and structure |
|
| >pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake Length = 249 | Back alignment and structure |
|
| >pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279 | Back alignment and structure |
|
| >pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their Ribosomal Binding Partners Length = 608 | Back alignment and structure |
|
| >pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538 | Back alignment and structure |
|
| >pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex Length = 972 | Back alignment and structure |
|
| >pdb|3UX8|A Chain A, Crystal Structure Of Uvra Length = 670 | Back alignment and structure |
|
| >pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra Length = 972 | Back alignment and structure |
|
| >pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From Pyrococcus Furiosus Pfu-867808-001 Length = 214 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 1551 bits (4017), Expect = 0.0
Identities = 466/1269 (36%), Positives = 729/1269 (57%), Gaps = 22/1269 (1%)
Query: 306 GDGRNNDPELVSPYNEDDAEVAKPVGLFSLFKYSTKLDMILVLLGCIGALINGGALPWYS 365
G N ++ ++ E V + ++F+Y+ LD + +L+G + A+I+G ALP
Sbjct: 9 GRADKNFSKMGKKSKKEKKEKKPAVSVLTMFRYAGWLDRLYMLVGTLAAIIHGVALPLMM 68
Query: 366 YFFGNFVNKI-------------ANESSDPDKTQMMKDAEKICLLMTVLAAIVMMGAYLE 412
FG+ + + ++ ++ T + A V++ AY++
Sbjct: 69 LIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYAYYYTGIGAGVLIVAYIQ 128
Query: 413 ITCWRLVGERSAQRIRTKYLRAVLRQDIAFFDTEVSTSDIMHGISSDIAQIQEVMGEKVA 472
++ W L R +IR K+ A++ Q+I +FD ++ ++ D+++I E +G+K+
Sbjct: 129 VSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVH-DVGELNTRLTDDVSKINEGIGDKIG 187
Query: 473 HFAHNIFTFICGYTVGFLRSWKVSLVVLSVTPLMMFCGMAYKAVYVGLTSKEEASYRRAG 532
F + TF G+ +GF R WK++LV+L+++P++ + + T KE +Y +AG
Sbjct: 188 MFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAG 247
Query: 533 SVAEQAISSIRTVFSFVAEDHFAVRYAGLLADSIPFGAKLGFAKGAGMGVIYLVTYATWA 592
+VAE+ +++IRTV +F + RY L ++ G K MG +L+ YA++A
Sbjct: 248 AVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYA 307
Query: 593 LAFWYGSILVARKELSGGAAIACFFGVNVGGRGLALSLSYFAQFAQGTVAATRVFEIIDR 652
LAFWYG+ LV KE S G + FF V +G + + FA AA VF+IID
Sbjct: 308 LAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDN 367
Query: 653 VPEIDPYNSEGRKLSSVSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGG 712
P ID ++ G K ++ G +EFK + F+YPSR E IL+ LNL + S +T+ALVG SG
Sbjct: 368 KPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGC 427
Query: 713 GKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMG 772
GKST L++R YDP G++++DG D++++ V++LR IG+V QEP+LFAT+I EN+ G
Sbjct: 428 GKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYG 487
Query: 773 KENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRI 832
+E+ TM E A K A+A+ FI +LP +DT VG+RG QLSGGQKQRIA+ARA++++P+I
Sbjct: 488 REDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKI 547
Query: 833 LLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGN 892
LLLDE TSALD+ESE++VQ A+DK GRTTIVIAHRL+TV+NA+ I D G +VE GN
Sbjct: 548 LLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGN 607
Query: 893 HRQLLERGGAYHDLVKLASEAVSQPQSKQKDAKRGIEFSIYEKSVIEVSRSRYANEVSKS 952
H +L+ G Y LV + + + E + S + S ++
Sbjct: 608 HDELMREKGIYFKLVMTQTAGNEIELGNEACKSKD-EIDNLDMSSKDSGSSLIRRRSTRK 666
Query: 953 KYFKSMQAEIQTVEEEQQKPRPRKFQLSEIWKLQRPEFAMIIFGFILGMHAGAILSIFPL 1012
+ + +E I KL E+ + G + G + F +
Sbjct: 667 SICGPHDQDRKLSTKEALDEDVPPASFWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSV 726
Query: 1013 ILGQALQVYFD-DTASTLRRDVRYLSLALVGLGFGCIIFMTGQQGFCGWAGTKLTMRVRE 1071
I + + V+ + T R++ SL + LG I Q G AG LT R+R
Sbjct: 727 IFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRY 786
Query: 1072 LLFRSILKQEPGWFDFEENSTGVLVSRLSIDSISFRSVLGDRFSVLLMGLSSAAVGLGVS 1131
++F+S+L+Q+ WFD +N+TG L +RL+ D+ + G R +V+ +++ G+ +S
Sbjct: 787 MVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIIS 846
Query: 1132 LVLNWRLTLVAAALTPFTLGASYLSLIINVGP-KIDNSSYAKASSIASGAVSNIRTVTTF 1190
L+ W+LTL+ A+ P A + + + G D + IA+ A+ N RTV +
Sbjct: 847 LIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSL 906
Query: 1191 SAQEQIINSFDKALSEPKKKSVKRSQILGLTLGFSQGAMYVAYTFTLWFGAYLVKQGHAS 1250
+ +++ + ++L P + ++K++ + G+T F+Q MY +Y FGAYLV Q +
Sbjct: 907 TREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMT 966
Query: 1251 FGVVYKIFLILVLSSFSVGQLAGLAPDTSMAATAIPAVLQITKRKPLIDNVKGRKLERSK 1310
F V +F +V + +VGQ++ APD + A + +++I ++ P ID+ + L+ +
Sbjct: 967 FENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNM 1026
Query: 1311 PLG-IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPN 1369
G ++ V F YP+RP + VL+ L+VK G +ALVG SG GKSTV+ L++RFYDP
Sbjct: 1027 LEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPM 1086
Query: 1370 QGKVMIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNP--KASWAEIEEAAE 1427
G V ++G +++++NV+WLR Q +V QEP LF +I +NIA G+ S+ EI AA+
Sbjct: 1087 AGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAK 1146
Query: 1428 EAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLES 1487
EA IH+FI SLP Y T+VG+ G QLSGGQKQRIAIARA+++ +LLLDEA+SALD ES
Sbjct: 1147 EANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTES 1206
Query: 1488 EKHVQDALRKVSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETLLASHLNGVYA 1547
EK VQ+AL K + T IV+AHRLSTI+ A++I V+++G V E+G+H+ LLA G+Y
Sbjct: 1207 EKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLA--QKGIYF 1264
Query: 1548 SLVRAETEA 1556
S+V + A
Sbjct: 1265 SMVSVQAGA 1273
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 645 bits (1666), Expect = 0.0
Identities = 211/620 (34%), Positives = 330/620 (53%), Gaps = 26/620 (4%)
Query: 959 QAEIQTVEEEQQKPRPRKFQLSEIWKL-QRPEFAMIIFGFILGMHAGAILSIFPLILGQA 1017
+++ ++++K + + +++ + ++ G + + G L + LI G
Sbjct: 15 FSKMGKKSKKEKKEKKPAVSVLTMFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDM 74
Query: 1018 LQVYFD-----------------DTASTLRRDVRYLSLALVGLGFGCIIFMTGQQGFCGW 1060
+ + L ++ + G+G G +I Q F
Sbjct: 75 TDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYAYYYTGIGAGVLIVAYIQVSFWCL 134
Query: 1061 AGTKLTMRVRELLFRSILKQEPGWFDFEENSTGVLVSRLSIDSISFRSVLGDRFSVLLMG 1120
A + ++R+ F +I+ QE GWFD + G L +RL+ D +GD+ +
Sbjct: 135 AAGRQIHKIRQKFFHAIMNQEIGWFD--VHDVGELNTRLTDDVSKINEGIGDKIGMFFQA 192
Query: 1121 LSSAAVGLGVSLVLNWRLTLVAAALTPFTLGASYL-SLIINVGPKIDNSSYAKASSIASG 1179
+++ G + W+LTLV A++P ++ + + I++ + +YAKA ++A
Sbjct: 193 MATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEE 252
Query: 1180 AVSNIRTVTTFSAQEQIINSFDKALSEPKKKSVKRSQILGLTLGFSQGAMYVAYTFTLWF 1239
++ IRTV F Q++ + ++ L E K+ +K++ +++G + +Y +Y W+
Sbjct: 253 VLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWY 312
Query: 1240 GAYLVKQGHASFGVVYKIFLILVLSSFSVGQLAGLAPDTSMAATAIPAVLQITKRKPLID 1299
G LV S G V +F +++ +FSVGQ + + A A V +I KP ID
Sbjct: 313 GTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSID 372
Query: 1300 NV--KGRKLERSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKST 1357
+ G K + + +E K + F+YPSR EV +LK LKVK G VALVG SG GKST
Sbjct: 373 SFSKSGHKPDNIQG-NLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKST 431
Query: 1358 VIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKA 1417
+ L+QR YDP G V I+G D+R INV++LR+ +V QEP LFA TI +NI G
Sbjct: 432 TVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDV 491
Query: 1418 SWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLD 1477
+ EIE+A +EA + FI LP ++T VGE G QLSGGQKQRIAIARA+++ ++LLLD
Sbjct: 492 TMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLD 551
Query: 1478 EASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETL 1537
EA+SALD ESE VQ AL K + TTIV+AHRLST+R A++IA G +VE G+H+ L
Sbjct: 552 EATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDEL 611
Query: 1538 LASHLNGVYASLVRAETEAN 1557
+ G+Y LV +T N
Sbjct: 612 MR--EKGIYFKLVMTQTAGN 629
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 492 bits (1270), Expect = e-158
Identities = 166/565 (29%), Positives = 287/565 (50%), Gaps = 13/565 (2%)
Query: 346 LVLLGCIGALINGGALPWYSYFFGNFVNKIANESSDPDKTQMMKDAEKICLLMTVLAAIV 405
+++ I ++N + + ++ ++ D++ ++ + L++ L +
Sbjct: 26 GLIVAGIALILNAASDTFMLSLLKPLLDDGFGKT---DRSVLLW----MPLVVIGLMILR 78
Query: 406 MMGAYLEITCWRLVGERSAQRIRTKYLRAVLRQDIAFFDTEVSTSDIMHGISSDIAQIQE 465
+ +Y+ C V + +R + ++ +AFFD + ST ++ I+ D Q+
Sbjct: 79 GITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQ-STGTLLSRITYDSEQVAS 137
Query: 466 VMGEKVAHFAHNIFTFICGYTVGFLRSWKVSLVVLSVTPLMMFCGMAYKAVYVGLTSKEE 525
+ + I + + F SW++S++++ + P++ + ++ +
Sbjct: 138 SSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQ 197
Query: 526 ASYRRAGSVAEQAISSIRTVFSFVAEDHFAVRYAGLLADSIPFGAKLGFAKGAGMGVIYL 585
+ + + AEQ + + V F ++ R+ + G K+ A +I L
Sbjct: 198 NTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQL 257
Query: 586 VTYATWALAFWYGSILVARKELSGGAAIACFFGVNVGGRGLALSLSYFAQFAQGTVAATR 645
+ A + S L+ G F + R L + AQF +G A
Sbjct: 258 IASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQT 317
Query: 646 VFEIIDRVPEIDPYNSEGRKLSSVSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLA 705
+F I+D E D R + +G +EF+ VTF YP R E LR++NL IP+ KT+A
Sbjct: 318 LFAILDSEQEKD---EGKRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVA 373
Query: 706 LVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSI 765
LVG SG GKST+ +LI RFYD +G I +DGHDL+ + LR Q+ +V Q LF ++
Sbjct: 374 LVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTV 433
Query: 766 LENVLMGK-ENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALAR 824
N+ + E + ++ A + A A FI+++ G DT +G+ G LSGGQ+QRIA+AR
Sbjct: 434 ANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIAR 493
Query: 825 AMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQ 884
A+++D IL+LDE TSALD+ESE +Q A+D++ RT++VIAHRL+T++ A+ IVV++
Sbjct: 494 ALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVED 553
Query: 885 GSVVEIGNHRQLLERGGAYHDLVKL 909
G +VE G H +LL + G Y L K+
Sbjct: 554 GIIVERGTHSELLAQHGVYAQLHKM 578
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 476 bits (1227), Expect = e-152
Identities = 186/590 (31%), Positives = 287/590 (48%), Gaps = 22/590 (3%)
Query: 969 QQKPRPRKFQLSEIWKLQRPEFAMIIFGFILGMHAGAILSIFPLILGQALQVYFDDTAST 1028
K +W P A +I I + A + +L L F T +
Sbjct: 3 NDKDLSTWQTFRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRS 62
Query: 1029 LRRDVRYLSLALVGLGFGCIIFMTGQQGFCGWAGTKLTMRVRELLFRSILKQEPGWFDFE 1088
+ + ++ L ++GL I W K+ M +R LF ++ +FD
Sbjct: 63 V---LLWMPLVVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFD-- 117
Query: 1089 ENSTGVLVSRLSIDSISFRSVLGDRFSVLLMGLSSAAVGLGVSLVLNWRLTLVAAALTPF 1148
+ STG L+SR++ DS S ++ +S + +W+L+++ L P
Sbjct: 118 KQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPI 177
Query: 1149 TLGASYLSLIINVGPKIDNSSY------AKASSIASGAVSNIRTVTTFSAQEQIINSFDK 1202
I V + + S + ++ A + + V F QE FDK
Sbjct: 178 VSI-----AIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDK 232
Query: 1203 ALSEPKKKSVKRSQILGLTLGFSQGAMYVAYTFTLWFGAYLVKQGHASFGVVYKIFLILV 1262
++ + + +K ++ Q +A F L+ ++ + G + +F ++
Sbjct: 233 VSNKMRLQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMI 292
Query: 1263 LSSFSVGQLAGLAPDTSMAATAIPAVLQITKRKPLIDNVKGRKLERSKPLGIELKMVTFT 1322
+ L + A + I + D R ++R+ +E + VTFT
Sbjct: 293 ALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDE-GKRVIDRATG-DLEFRNVTFT 350
Query: 1323 YPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLRE 1382
YP R EV L++ LK+ G VALVG SGSGKST+ LI RFYD ++G ++++G DLRE
Sbjct: 351 YPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLRE 409
Query: 1383 INVKWLRKQTALVGQEPALFAGTIRDNIALGNPKA-SWAEIEEAAEEAYIHKFISSLPQG 1441
+ LR Q ALV Q LF T+ +NIA + S +IEEAA AY FI+ + G
Sbjct: 410 YTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNG 469
Query: 1442 YETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKR 1501
+T +GE+GV LSGGQ+QRIAIARA+L+ S +L+LDEA+SALD ESE+ +Q AL ++ K
Sbjct: 470 LDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKN 529
Query: 1502 ATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETLLASHLNGVYASLVR 1551
T++V+AHRLSTI +A+ I VV DG +VE G+H LLA +GVYA L +
Sbjct: 530 RTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLA--QHGVYAQLHK 577
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 484 bits (1248), Expect = e-155
Identities = 167/570 (29%), Positives = 273/570 (47%), Gaps = 15/570 (2%)
Query: 346 LVLLGCIGALINGGALPWYSYFFGNFVNKIANESSDPDKTQMMKDAEKICLLMTVLAAIV 405
+ I +I G ++ + N + ++ I + + + +
Sbjct: 15 RIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVR 74
Query: 406 MMGAYLEITCWRLVGERSAQRIRTKYLRAVLRQDIAFFDTEVSTSDIMHGISSDIAQIQE 465
++ + + IR K + F+ ++ + +D+ Q ++
Sbjct: 75 PPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANN-QVGQVISRVINDVEQTKD 133
Query: 466 VMGEKVAHFAHNIFTFICGYTVGFLRSWKVSLVVLSVTPLMMFCGMAYKAVYVGLTSKE- 524
+ + + + T I ++ F K++L L + P + ++
Sbjct: 134 FILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILT-----VYVFFGRLRKL 188
Query: 525 -EASYRRAG---SVAEQAISSIRTVFSFVAEDHFAVRYAGLLADSIPFGAKLGFAKGAGM 580
+ + + I V SF ED+ A + + + K
Sbjct: 189 TRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSF 248
Query: 581 GVIYLVTYATWALAFWYGSILVARKELSGGAAIACFFGVNVGGRGLALSLSYFAQFAQGT 640
I VT + G+ L ++ G A + + L ++ F Q
Sbjct: 249 AAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSF 308
Query: 641 VAATRVFEIIDRVPEIDPYNSEG-RKLSSVSGKIEFKGVTFAYPSRPETVILRSLNLVIP 699
+ RVF++ID +I N G + + G+I+ V+F Y E IL+ +NL I
Sbjct: 309 ASMDRVFQLIDEDYDIK--NGVGAQPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIE 365
Query: 700 SSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIGMVGQEPI 759
+T+A VG SGGGKST+ LI RFYD T G I +DGH++K LR QIG+V Q+ I
Sbjct: 366 KGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNI 425
Query: 760 LFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQR 819
LF+ ++ EN+L+G+ AT +E V A K A+AH FI LP GYDT+VG+RG +LSGGQKQR
Sbjct: 426 LFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQR 485
Query: 820 IALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKNANTI 879
+++AR + +P IL+LDE TSALD ESESI+Q+A+D +S RTT+++AHRL+T+ +A+ I
Sbjct: 486 LSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKI 545
Query: 880 VVLDQGSVVEIGNHRQLLERGGAYHDLVKL 909
VV++ G +VE G HR+L+ + GAY L +
Sbjct: 546 VVIENGHIVETGTHRELIAKQGAYEHLYSI 575
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 452 bits (1165), Expect = e-143
Identities = 172/582 (29%), Positives = 282/582 (48%), Gaps = 16/582 (2%)
Query: 979 LSEIWKLQRPEFAMIIFGFILGMHAGAILSIFPLILGQALQVYFD----DTASTLRRDVR 1034
+ + +P I I+G+ I + PL++ A+ + T +
Sbjct: 2 IKRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTI 61
Query: 1035 YLSLALVGLGFGCIIFMTGQQGFCGWAGTKLTMRVRELLFRSILKQEPGWFDFEENSTGV 1094
+ +AL +Q W K+ +R+ L+ + ++ N G
Sbjct: 62 AIGIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYA--NNQVGQ 119
Query: 1095 LVSRLSIDSISFRSVLGDRFSVLLMGLSSAAVGLGVSLVLNWRLTLVAAALTPF-TLGAS 1153
++SR+ D + + + + + + L + L+ +LTL A + PF L
Sbjct: 120 VISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVY 179
Query: 1154 YLSLIINVGPKIDNSSYAKASSIASGAVSNIRTVTTFSAQEQIINSFDKALSEPKKKSVK 1213
+ + + + A+ V I V +F+ ++ +FDK + +++K
Sbjct: 180 VFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALK 239
Query: 1214 RSQILGLTLGFSQGAMYVAYTFTLWFGAYLVKQGHASFGVVYKIFLILVLSSFS-VGQLA 1272
++ + + + GAYL G + G + F+ + F + +L
Sbjct: 240 HTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLA-AFVGYLELLFGPLRRLV 298
Query: 1273 GLAPDTSMAATAIPAVLQITKRKPLIDNVKG-RKLERSKPLG-IELKMVTFTYPSRPEVT 1330
+ + ++ V Q+ I N G + +E + G I++ V+F Y E
Sbjct: 299 ASFTTLTQSFASMDRVFQLIDEDYDIKNGVGAQPIEIKQ--GRIDIDHVSFQYNDN-EAP 355
Query: 1331 VLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRK 1390
+LKD L ++ G VA VG SG GKST+I LI RFYD G+++I+G ++++ LR
Sbjct: 356 ILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRN 415
Query: 1391 QTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESG 1450
Q LV Q+ LF+ T+++NI LG P A+ E+ EAA+ A H FI +LPQGY+T+VGE G
Sbjct: 416 QIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERG 475
Query: 1451 VQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHR 1510
V+LSGGQKQR++IAR L +L+LDEA+SALDLESE +Q+AL +SK TT++VAHR
Sbjct: 476 VKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHR 535
Query: 1511 LSTIREANMIAVVRDGAVVEYGSHETLLASHLNGVYASLVRA 1552
LSTI A+ I V+ +G +VE G+H L+A G Y L
Sbjct: 536 LSTITHADKIVVIENGHIVETGTHRELIA--KQGAYEHLYSI 575
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 484 bits (1248), Expect = e-155
Identities = 163/570 (28%), Positives = 272/570 (47%), Gaps = 23/570 (4%)
Query: 346 LVLLGCIGALINGGALPWYSYFFGNFVNKIANESSDPDKTQMMKDAEKICLLMTVLAAIV 405
+++ I +IN A + +++ + + + ++ L +
Sbjct: 26 GLVVSTIALVINAAADTYMISLLKPLLDEGFGN---AESNFLRI----LPFMILGLMFVR 78
Query: 406 MMGAYLEITCWRLVGERSAQRIRTKYLRAVLRQDIAFFDTEVSTSDIMHGISSDIAQIQE 465
+ + C V ++R + + + FFD E ST ++ I+ D Q+
Sbjct: 79 GLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQE-STGGLLSRITYDSEQVAG 137
Query: 466 VMGEKVAHFAHNIFTFICGYTVGFLRSWKVSLVVLSVTPLMMFCGMAYKAVYVGLTSKEE 525
+ + I T+ F SW++SLV++ V P++ F +V ++
Sbjct: 138 ATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFA-----ISFVSKRFRKI 192
Query: 526 ASYRRAG-----SVAEQAISSIRTVFSFVAEDHFAVRYAGLLADSIPFGAKLGFAKGAGM 580
+ + S AEQ + + V S+ ++ R+ + KL A+
Sbjct: 193 SRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIAD 252
Query: 581 GVIYLVTYATWALAFWYGSILVARKELSGGAAIACFFGVNVGGRGLALSLSYFAQFAQGT 640
VI ++ + S+ R EL+ G F + R L S ++F +G
Sbjct: 253 PVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGM 312
Query: 641 VAATRVFEIIDRVPEIDPYNSEGRKLSSVSGKIEFKGVTFAYPSRPETVILRSLNLVIPS 700
A +F ++D E D + V+G+++ K VTF Y + E L ++ IP
Sbjct: 313 AACQTLFGLMDLETERDN---GKYEAERVNGEVDVKDVTFTYQGK-EKPALSHVSFSIPQ 368
Query: 701 SKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIGMVGQEPIL 760
KT+ALVG SG GKST+ L RFYD G I LDGHD++ ++ LR +V Q L
Sbjct: 369 GKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHL 428
Query: 761 FATSILENVLMGKE-NATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQR 819
F +I N+ E T ++ A + A A FI +P G DT +G+ GT LSGGQ+QR
Sbjct: 429 FNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQR 488
Query: 820 IALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKNANTI 879
+A+ARA+++D +L+LDE TSALD+ESE +Q A+D++ +T +VIAHRL+T++ A+ I
Sbjct: 489 VAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEI 548
Query: 880 VVLDQGSVVEIGNHRQLLERGGAYHDLVKL 909
+V+D+G ++E G H LL + GAY L ++
Sbjct: 549 LVVDEGEIIERGRHADLLAQDGAYAQLHRI 578
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 463 bits (1194), Expect = e-148
Identities = 172/590 (29%), Positives = 273/590 (46%), Gaps = 22/590 (3%)
Query: 969 QQKPRPRKFQLSEIWKLQRPEFAMIIFGFILGMHAGAILSIFPLILGQALQVYFDDTAST 1028
+W R A ++ I + A + +L L F + S
Sbjct: 3 LHSDESNWQTFKRLWTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAESN 62
Query: 1029 LRRDVRYLSLALVGLGFGCIIFMTGQQGFCGWAGTKLTMRVRELLFRSILKQEPGWFDFE 1088
+R L ++GL F + W + M++R LF + +FD
Sbjct: 63 F---LRILPFMILGLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFD-- 117
Query: 1089 ENSTGVLVSRLSIDSISFRSVLGDRFSVLLMGLSSAAVGLGVSLVLNWRLTLVAAALTPF 1148
+ STG L+SR++ DS ++ +S L + +W+L+LV + P
Sbjct: 118 QESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPV 177
Query: 1149 TLGASYLSLIINVGPKIDNSSY------AKASSIASGAVSNIRTVTTFSAQEQIINSFDK 1202
I V + S +S A + + V ++ QE FDK
Sbjct: 178 VAF-----AISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDK 232
Query: 1203 ALSEPKKKSVKRSQILGLTLGFSQGAMYVAYTFTLWFGAYLVKQGHASFGVVYKIFLILV 1262
+ +++++K + Q +A L+ + + + G +F +
Sbjct: 233 VSNSMRQQTMKLVSAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMF 292
Query: 1263 LSSFSVGQLAGLAPDTSMAATAIPAVLQITKRKPLIDNVKGRKLERSKPLGIELKMVTFT 1322
+ L + + A + + + DN K + ER +++K VTFT
Sbjct: 293 GLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERDNGK-YEAERVNG-EVDVKDVTFT 350
Query: 1323 YPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLRE 1382
Y + E L + G VALVG SGSGKST+ L RFYD + G + ++G D+R+
Sbjct: 351 YQGK-EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRD 409
Query: 1383 INVKWLRKQTALVGQEPALFAGTIRDNIALG-NPKASWAEIEEAAEEAYIHKFISSLPQG 1441
+ LR+ ALV Q LF TI +NIA + + +IE+AA +A+ +FI ++PQG
Sbjct: 410 YKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQG 469
Query: 1442 YETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKR 1501
+T +GE+G LSGGQ+QR+AIARA+L+ + VL+LDEA+SALD ESE+ +Q AL ++ K
Sbjct: 470 LDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKN 529
Query: 1502 ATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETLLASHLNGVYASLVR 1551
T +V+AHRLSTI +A+ I VV +G ++E G H LLA +G YA L R
Sbjct: 530 KTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLA--QDGAYAQLHR 577
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 462 bits (1192), Expect = e-152
Identities = 110/269 (40%), Positives = 157/269 (58%), Gaps = 4/269 (1%)
Query: 656 IDPYNSEGRKLSSVSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKS 715
+ P S ++ G ++F+ V+FAYP+ P +L+ L + K ALVG +G GKS
Sbjct: 1 MSPL-SGSLAPLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKS 59
Query: 716 TVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGK-E 774
TV AL++ Y PT G + LDG L +L TQ+ VGQEP+LF S EN+ G
Sbjct: 60 TVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTR 119
Query: 775 NATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILL 834
TM+E A + AH FIS P GYDT+VG+ G QLSGGQ+Q +ALARA+I+ PR+L+
Sbjct: 120 TPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLI 179
Query: 835 LDEPTSALDSESESIVQQAIDKIS--VGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGN 892
LD TSALD+ ++ VQ+ + + RT ++I +L+ + A+ I+ L +GSV E G
Sbjct: 180 LDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGT 239
Query: 893 HRQLLERGGAYHDLVKLASEAVSQPQSKQ 921
H QL+ERGG Y +V+ +
Sbjct: 240 HLQLMERGGCYRSMVEALAAPSDAAAHHH 268
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 420 bits (1081), Expect = e-136
Identities = 104/257 (40%), Positives = 153/257 (59%), Gaps = 14/257 (5%)
Query: 1299 DNVKGRKLERSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTV 1358
N+KG ++ + V+F YP+ P V VL+ + G + ALVG +GSGKSTV
Sbjct: 11 LNMKGL---------VKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTV 61
Query: 1359 IWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNP-KA 1417
L+Q Y P GKV+++G L + + +L Q A VGQEP LF + R+NIA G
Sbjct: 62 AALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTP 121
Query: 1418 SWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLD 1477
+ EI A E+ H FIS PQGY+T+VGE+G QLSGGQ+Q +A+ARA+++ R+L+LD
Sbjct: 122 TMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILD 181
Query: 1478 EASSALDLESEKHVQDALRKVSKRA--TTIVVAHRLSTIREANMIAVVRDGAVVEYGSHE 1535
A+SALD ++ VQ L + + A T +++ +LS A+ I +++G+V E G+H
Sbjct: 182 NATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHL 241
Query: 1536 TLLASHLNGVYASLVRA 1552
L+ G Y S+V A
Sbjct: 242 QLME--RGGCYRSMVEA 256
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 416 bits (1072), Expect = e-135
Identities = 109/245 (44%), Positives = 160/245 (65%), Gaps = 2/245 (0%)
Query: 669 VSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPT 728
I F+ + F Y + L ++NL I + + +VG SG GKST+ LI+RFY P
Sbjct: 4 HHHDITFRNIRFRYKPDSPVI-LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE 62
Query: 729 KGLITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAA 788
G + +DGHDL WLR Q+G+V Q+ +L SI++N+ + ++++ + A K A
Sbjct: 63 NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLA 122
Query: 789 SAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESES 848
AH FISEL GY+T VG++G LSGGQ+QRIA+ARA++ +P+IL+ DE TSALD ESE
Sbjct: 123 GAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEH 182
Query: 849 IVQQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLER-GGAYHDLV 907
++ + + KI GRT I+IAHRL+TVKNA+ I+V+++G +VE G H++LL Y L
Sbjct: 183 VIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLY 242
Query: 908 KLASE 912
+L S+
Sbjct: 243 QLQSD 247
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 394 bits (1015), Expect = e-127
Identities = 106/242 (43%), Positives = 153/242 (63%), Gaps = 2/242 (0%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
I + + F Y V +L + L +K G ++ +VG SGSGKST+ LIQRFY P G+V
Sbjct: 8 ITFRNIRFRYKPDSPV-ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV 66
Query: 1374 MIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHK 1433
+I+G DL + WLR+Q +V Q+ L +I DNI+L NP S ++ AA+ A H
Sbjct: 67 LIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHD 126
Query: 1434 FISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQD 1493
FIS L +GY T VGE G LSGGQ+QRIAIARA++ ++L+ DEA+SALD ESE +
Sbjct: 127 FISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 186
Query: 1494 ALRKVSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETLLASHLNGVYASLVRAE 1553
+ K+ K T I++AHRLST++ A+ I V+ G +VE G H+ LL+ +Y+ L + +
Sbjct: 187 NMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLS-EPESLYSYLYQLQ 245
Query: 1554 TE 1555
++
Sbjct: 246 SD 247
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 400 bits (1031), Expect = e-129
Identities = 99/238 (41%), Positives = 155/238 (65%), Gaps = 3/238 (1%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
+ + V FAY + ILR ++ + +A G SGGGKST+F+L+ERFY PT G I
Sbjct: 2 LSARHVDFAYDDSEQ--ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 733 TLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKE-NATMKEAVAACKAASAH 791
T+DG + ++ ++ R+QIG V Q+ + A +I EN+ G E + T ++ A A
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 792 SFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQ 851
SF+ +P +T+VG+RG ++SGGQ+QR+A+ARA +++P+IL+LDE T++LDSESES+VQ
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 852 QAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLERGGAYHDLVKL 909
+A+D + GRTT+VIAHRL+T+ +A+ I +++G + G H +L+ Y V
Sbjct: 180 KALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVSE 237
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 382 bits (984), Expect = e-123
Identities = 91/239 (38%), Positives = 146/239 (61%), Gaps = 5/239 (2%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
+ + V F Y ++ L+D + + S++A G SG GKST+ L++RFY P G++
Sbjct: 2 LSARHVDFAYDDSEQI--LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 1374 MIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALG-NPKASWAEIEEAAEEAYIH 1432
I+G + I+++ R Q V Q+ A+ AGTIR+N+ G + ++ + + A+
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 1433 KFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQ 1492
F+ ++P T+VGE GV++SGGQ+QR+AIARA L+ ++L+LDEA+++LD ESE VQ
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 1493 DALRKVSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETLLASHLNGVYASLVR 1551
AL + K TT+V+AHRLSTI +A+ I + G + G H L+A+ + +YA V
Sbjct: 180 KALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT--HPLYAKYVS 236
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 391 bits (1006), Expect = e-125
Identities = 105/258 (40%), Positives = 165/258 (63%), Gaps = 2/258 (0%)
Query: 656 IDPYNSEGRKLSSVSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKS 715
++ ++ IEF V F+YP + L+S+N IPS T ALVG +G GKS
Sbjct: 2 LESFSLTS-HEKKFGVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKS 60
Query: 716 TVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKEN 775
T+ L+ RFYD G I + G ++ +R+ IG+V Q+ ILF +I N+L GK +
Sbjct: 61 TIAKLLYRFYDAE-GDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLD 119
Query: 776 ATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLL 835
AT +E + A K+A + FI LP +DT VG++G +LSGG++QRIA+AR ++KDP+I++
Sbjct: 120 ATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIF 179
Query: 836 DEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQ 895
DE TS+LDS++E + Q+A++ + RT I+IAHRL+T+ +A +I++L++G +VE G H+
Sbjct: 180 DEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKD 239
Query: 896 LLERGGAYHDLVKLASEA 913
LL+ G Y ++ + S
Sbjct: 240 LLKLNGEYAEMWNMQSGG 257
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 366 bits (943), Expect = e-117
Identities = 98/260 (37%), Positives = 154/260 (59%), Gaps = 3/260 (1%)
Query: 1298 IDNVKGRKLERSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKST 1357
+++ E+ + IE V F+YP + LK + G+ ALVG +GSGKST
Sbjct: 2 LESFSLTSHEKKFGVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKST 61
Query: 1358 VIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKA 1417
+ L+ RFYD +G + I G ++ + N +R +V Q+ LF TI+ NI G A
Sbjct: 62 IAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDA 120
Query: 1418 SWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLD 1477
+ E+ +A + A ++ FI +LP+ ++T VG G++LSGG++QRIAIAR +LK ++++ D
Sbjct: 121 TDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFD 180
Query: 1478 EASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETL 1537
EA+S+LD ++E Q A+ + K T I++AHRLSTI A I ++ G +VE G+H+ L
Sbjct: 181 EATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDL 240
Query: 1538 LASHLNGVYASLVRAETEAN 1557
L LNG YA + ++ N
Sbjct: 241 LK--LNGEYAEMWNMQSGGN 258
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 376 bits (969), Expect = e-119
Identities = 117/301 (38%), Positives = 173/301 (57%), Gaps = 7/301 (2%)
Query: 626 LALSLSYFAQFAQGTVAATRVFEIIDRVPEIDPYNSEG-RKLSSVSGKIEFKGVTFAY-P 683
S + + + +F+++ E+ + G L G+IEF+ V F+Y
Sbjct: 8 HHHSSGLVPRGSHMFIDMENMFDLLKEETEVK--DLPGAGPLRFQKGRIEFENVHFSYAD 65
Query: 684 SRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQ 743
R L+ ++ + +TLALVG SG GKST+ L+ RFYD + G I +DG D+ +
Sbjct: 66 GRE---TLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVT 122
Query: 744 VKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDT 803
LR+ IG+V Q+ +LF +I +N+ G+ A E AA +AA H I P GY T
Sbjct: 123 QASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRT 182
Query: 804 QVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTT 863
QVG+RG +LSGG+KQR+A+AR ++K P I+LLDE TSALD+ +E +Q ++ K+ RTT
Sbjct: 183 QVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTT 242
Query: 864 IVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLERGGAYHDLVKLASEAVSQPQSKQKD 923
IV+AHRL+TV NA+ I+V+ G +VE G H LL RGG Y D+ +L + +
Sbjct: 243 IVVAHRLSTVVNADQILVIKDGCIVERGRHEALLSRGGVYADMWQLQQGQEETSEDTKPQ 302
Query: 924 A 924
Sbjct: 303 T 303
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 338 bits (868), Expect = e-105
Identities = 121/281 (43%), Positives = 167/281 (59%), Gaps = 6/281 (2%)
Query: 1270 QLAGLAPDTSMAATAIPAVLQITKRKPLIDNVKG-RKLERSKPLGIELKMVTFTYPSRPE 1328
+GL P S + + + K + + ++ G L K IE + V F+Y
Sbjct: 10 HSSGLVPRGSHMFIDMENMFDLLKEETEVKDLPGAGPLRFQKG-RIEFENVHFSY--ADG 66
Query: 1329 VTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWL 1388
L+D V G +ALVG SG+GKST++ L+ RFYD + G + I+G D+ ++ L
Sbjct: 67 RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASL 126
Query: 1389 RKQTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGE 1448
R +V Q+ LF TI DNI G A E+E AA+ A IH I + P+GY TQVGE
Sbjct: 127 RSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGE 186
Query: 1449 SGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVA 1508
G++LSGG+KQR+AIAR ILK ++LLDEA+SALD +E+ +Q +L KV TTIVVA
Sbjct: 187 RGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVA 246
Query: 1509 HRLSTIREANMIAVVRDGAVVEYGSHETLLASHLNGVYASL 1549
HRLST+ A+ I V++DG +VE G HE LL+ GVYA +
Sbjct: 247 HRLSTVVNADQILVIKDGCIVERGRHEALLS--RGGVYADM 285
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 387 bits (996), Expect = e-119
Identities = 165/596 (27%), Positives = 284/596 (47%), Gaps = 61/596 (10%)
Query: 335 LFKYST--KLDMILVLLGCIGALINGGALPWYSYFFGNFVNKIANESSDPDKTQMMKDAE 392
L Y +I+V + ++ Y G ++ + + +
Sbjct: 28 LLGYLRPHTFTLIMVF---VFVTVSSILGVLSPYLIGKTIDVVFVP---RRFDLLPR--- 78
Query: 393 KICLLMTVLAAIVMMGAYLEITCWRLVGERSAQRIRTKYLRAVLRQDIAFFDTEVSTSDI 452
L++ + A+ + +L+ + + R+R + + R + FFD DI
Sbjct: 79 -YMLILGTIYALTSLLFWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDRT-PHGDI 136
Query: 453 MHGISSDIAQIQEVMGEKVAHFAHNIFTFICGYTVGFLRSWKVSLVVLSVTPLMMFCGMA 512
+ + +D+ I V+G + F I T + F + +SLV LS+ PL +
Sbjct: 137 ISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLI--- 193
Query: 513 YKAVYVGLTSKEEASYRRA--GSV---AEQAISSIRTVFSFVAEDHFAVRYAGL---LAD 564
V +++ + G + E+ IS + + F E+ ++ + L
Sbjct: 194 --TQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRK 251
Query: 565 SIPFGAKLGFAKGAGMGVIYLVTYATWALAFWYGSILVARKELSGGAAIACFFGVNVGGR 624
G K G ++ +V +AL +G L + ++ G IA F
Sbjct: 252 V---GTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGT-IATF-------- 299
Query: 625 GLALSLSYFAQFAQ--------------GTVAATRVFEIIDRVPEIDPYNSEGRKLSSVS 670
+ Y QF + +A R+FEI+D E D + + +L V
Sbjct: 300 -----IGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKD--DPDAVELREVR 352
Query: 671 GKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKG 730
G+IEFK V F+Y + +L+ + I + +ALVG +G GK+T+ L+ RFYD +G
Sbjct: 353 GEIEFKNVWFSY--DKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRG 410
Query: 731 LITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASA 790
I +DG D++ ++ LR+ IG+V Q+ ILF+T++ EN+ G AT +E A K +
Sbjct: 411 QILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHS 470
Query: 791 HSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIV 850
FI LP GY+T + D G LS GQ+Q +A+ RA + +P+IL+LDE TS +D+++E +
Sbjct: 471 DHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSI 530
Query: 851 QQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLERGGAYHDL 906
Q A+ K+ G+T+I+IAHRL T+KNA+ I+VL G +VE+G H +L+++ G Y++L
Sbjct: 531 QAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQKRGFYYEL 586
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 380 bits (979), Expect = e-117
Identities = 166/602 (27%), Positives = 297/602 (49%), Gaps = 43/602 (7%)
Query: 968 EQQKPRPRKFQLSEIWKLQRPEFAMIIFGFILGMHAGAILSIFPLILGQALQVYFDDTAS 1027
E+ + L + RP +I F+ + + + P ++G+ + V F
Sbjct: 14 EKPALKNPTATLRRLLGYLRPHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVP--- 70
Query: 1028 TLRRDVRYLS---LALVGLGFGCIIFMTGQQGFCGWAGTKLTMRVRELLFRSILKQEPGW 1084
R L L L + + Q + R+R+ LF + + G+
Sbjct: 71 ---RRFDLLPRYMLILGTIYALTSLLFWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGF 127
Query: 1085 FDFEENSTGVLVSRLS--IDSISFRSVLGDRFSVLLMGLSSAAVGLGVSLVLNWRLTLVA 1142
FD G ++SR+ +D+I+ +VLG+ G+ + A + + +N L+LV
Sbjct: 128 FD--RTPHGDIISRVINDVDNIN--NVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVT 183
Query: 1143 AALTPFTLGASYLSLIINVGPKIDNSSYAKASSIASGAV--------SNIRTVTTFSAQE 1194
++ P T+ + + V + Y + G + S + + F+ +E
Sbjct: 184 LSIVPLTVLITQI-----VSSQT--RKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREE 236
Query: 1195 QIINSFDKALSEPKKKSVKRSQIL-GLTLGFSQGAMYVAYTFTLWFGAYLVKQGHASFGV 1253
+ + FD+ ++E +K ++QI G+ + + FG +L + + G
Sbjct: 237 KEMEKFDR-VNESLRKVGTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGT 295
Query: 1254 VYKIFLILVLSSFS--VGQLAGLAPDTSMAATAIPAVLQITKRKPLIDNVKGRKLERSKP 1311
+ F+ F+ + +L+ MA + + +I + D+ +L +
Sbjct: 296 IA-TFIGYS-RQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKDDPDAVELREVR- 352
Query: 1312 LG-IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQ 1370
G IE K V F+Y + VLKD +K G VALVG +GSGK+T++ L+ RFYD ++
Sbjct: 353 -GEIEFKNVWFSY--DKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDR 409
Query: 1371 GKVMIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAY 1430
G+++++G+D+R+I LR +V Q+ LF+ T+++N+ GNP A+ EI+EAA+ +
Sbjct: 410 GQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTH 469
Query: 1431 IHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKH 1490
FI LP+GYET + ++G LS GQ+Q +AI RA L ++L+LDEA+S +D ++EK
Sbjct: 470 SDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKS 529
Query: 1491 VQDALRKVSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETLLASHLNGVYASLV 1550
+Q A+ K+ + T+I++AHRL+TI+ A++I V+RDG +VE G H+ L+ G Y L
Sbjct: 530 IQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQK--RGFYYELF 587
Query: 1551 RA 1552
+
Sbjct: 588 TS 589
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 343 bits (882), Expect = e-103
Identities = 152/578 (26%), Positives = 269/578 (46%), Gaps = 33/578 (5%)
Query: 982 IWKLQRPEFAMIIFGFILGMHAGAILSIF-PLILGQALQ--VYFDDTASTLRRDVRYLSL 1038
+ + +P + + + M I + P +L + + + D + L+ + L +
Sbjct: 14 LARYLKPYWIFAVLAPLF-MVVEVICDLSQPTLLARIVDEGIARGDFSLVLKTGILMLIV 72
Query: 1039 ALVGLGFGCIIFMTGQQGFCGWAGTKLTMRVRELLFRSILKQEPGWFDFEENSTGVLVSR 1098
AL+G G F +A +R LFR + + T L++R
Sbjct: 73 ALIGAVGGIG-----CTVFASYASQNFGADLRRDLFRKV--LSFSISNVNRFHTSSLITR 125
Query: 1099 LSIDSISFRSVLGDRFSVLLMGLSSAAVGLGVSLVLNWRLTLVAAALTPFTLGASYLSLI 1158
L+ D ++++ +++ G+ +++ +N +L+ V L P + L
Sbjct: 126 LTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIFLIPPIVLLFVW-LT 184
Query: 1159 INVGP-------KIDNSSYAKASSIASGAVSNIRTVTTFSAQEQIINSFDKALSEPKKKS 1211
P D + + + + +R V F +E +F KA ++
Sbjct: 185 KKGNPLFRKIQESTD-----EVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSI 239
Query: 1212 VKRSQILGLTLGFSQGAMYVAYTFTLWFGAYLVKQGHASFG--VVYKIFLILVLSSFS-V 1268
+ ++ L + + LWFG LV+ G + Y +L+ ++ S +
Sbjct: 240 ISAFSLIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMI 299
Query: 1269 GQLAGLAPDTSMAATAIPAVLQITKRKPLIDNVKGRKLERSKPLGIELKMVTFTYPSRPE 1328
G + S +A + VL KP I+ + + + V F Y +
Sbjct: 300 GNILNFIVRASASAKRVLEVLNE---KPAIEEADNALALPNVEGSVSFENVEFRYFENTD 356
Query: 1329 VTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWL 1388
VL VK GS+VA++G +GSGKST++ LI R DP +G+V ++ +D+R + +K L
Sbjct: 357 -PVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDL 415
Query: 1389 RKQTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGE 1448
R + V QE LF+GTI++N+ G A+ EI EAA+ A IH FI SLP+GY+++V
Sbjct: 416 RGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVER 475
Query: 1449 SGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVA 1508
G SGGQKQR++IARA++K +VL+LD+ +S++D +EK + D L++ +K TT ++
Sbjct: 476 GGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIIT 535
Query: 1509 HRLSTIREANMIAVVRDGAVVEYGSHETLLASHLNGVY 1546
++ T A+ I V+ +G V +G+H+ LL Y
Sbjct: 536 QKIPTALLADKILVLHEGKVAGFGTHKELLEH--CKPY 571
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 331 bits (851), Expect = 1e-99
Identities = 139/550 (25%), Positives = 249/550 (45%), Gaps = 48/550 (8%)
Query: 383 DKTQMMKDAEKI---CLLMTVLAAIVMMGAYLEITCWRLVGERSAQRIRTKYLRAVLRQD 439
D+ D + +LM ++A I +G + +R R V
Sbjct: 51 DEGIARGDFSLVLKTGILMLIVALIGAVGGIGCTVFASYASQNFGADLRRDLFRKV--LS 108
Query: 440 IAFFDTE-VSTSDIMHGISSDIAQIQEV--MGEKVAHFAHNIFTFICGYTVGFLRSWKVS 496
+ + TS ++ +++D+ Q+Q + M ++ A F+ G + + K+S
Sbjct: 109 FSISNVNRFHTSSLITRLTNDVTQLQNLVMMLLRIVVRA--PLLFVGGIVMAVSINVKLS 166
Query: 497 LVVLSVTPLMMFCGMAYKAVYVGLTSKEEASYRRAGSVAEQAISSIRTVFSFVAEDH--- 553
V++ + P ++ + L K + S V + + +R V +F E++
Sbjct: 167 SVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENE 226
Query: 554 -FAVRYAGLLADSIPFGAKLGFAKGAGMGVIYLVTYATWALAFWYGSILVARKELSGGAA 612
F L I + + + W+G +LV ++ G+
Sbjct: 227 NFRKANESLRRSII----SAFSLIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSI 282
Query: 613 IACFFGVNVGGRGLALSLSY--------------FAQFAQGTVAATRVFEIIDRVPEIDP 658
+A + +Y + + +A RV E+++ P I+
Sbjct: 283 MA-Y-------------TNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIEE 328
Query: 659 YNSEGRKLSSVSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVF 718
L +V G + F+ V F Y + V L +N + +A++G +G GKST+
Sbjct: 329 -ADNALALPNVEGSVSFENVEFRYFENTDPV-LSGVNFSVKPGSLVAVLGETGSGKSTLM 386
Query: 719 ALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENATM 778
LI R DP +G + +D D++++++K LR I V QE +LF+ +I EN+ G+E+AT
Sbjct: 387 NLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATD 446
Query: 779 KEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEP 838
E V A K A H FI LP GYD++V G SGGQKQR+++ARA++K P++L+LD+
Sbjct: 447 DEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDC 506
Query: 839 TSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLE 898
TS++D +E + + + + G TT +I ++ T A+ I+VL +G V G H++LLE
Sbjct: 507 TSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLE 566
Query: 899 RGGAYHDLVK 908
Y ++ +
Sbjct: 567 HCKPYREIYE 576
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 205 bits (523), Expect = 4e-58
Identities = 63/248 (25%), Positives = 117/248 (47%), Gaps = 6/248 (2%)
Query: 1314 IELKMVTFTYPSRPE-VTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGK 1372
+ +K +T Y +L++ + G V L+G +GSGKST++ R + +G+
Sbjct: 20 MTVKDLTAKY--TEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNT-EGE 76
Query: 1373 VMIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIH 1432
+ I+GV I ++ RK ++ Q+ +F+GT R N+ S EI + A+E +
Sbjct: 77 IQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNA-AHSDQEIWKVADEVGLR 135
Query: 1433 KFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQ 1492
I P + + + G LS G KQ + +AR++L +++LLLDE S+ LD + + ++
Sbjct: 136 SVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIR 195
Query: 1493 DALRKVSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETLLASHLNGVYASLVRA 1552
L++ T I+ R+ + E + V+ + V +Y S L + +
Sbjct: 196 RTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYP-ADRFVAGFIG 254
Query: 1553 ETEANAFS 1560
+ N
Sbjct: 255 SPKMNFLP 262
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 188 bits (480), Expect = 2e-52
Identities = 61/284 (21%), Positives = 124/284 (43%), Gaps = 6/284 (2%)
Query: 671 GKIEFKGVTFAYPSRPETV-ILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTK 729
G++ K +T Y IL +++ I + + L+G +G GKST+ + R + +
Sbjct: 18 GQMTVKDLTAKY--TEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNT-E 74
Query: 730 GLITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAAS 789
G I +DG S+ ++ R G++ Q+ +F+ + +N L + +E
Sbjct: 75 GEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKN-LDPNAAHSDQEIWKVADEVG 133
Query: 790 AHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESI 849
S I + P D + D G LS G KQ + LAR+++ +ILLLDEP++ LD + I
Sbjct: 134 LRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQI 193
Query: 850 VQQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLER-GGAYHDLVK 908
+++ + + T I+ R+ + + +V+++ V + + +L +
Sbjct: 194 IRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFVAGFI 253
Query: 909 LASEAVSQPQSKQKDAKRGIEFSIYEKSVIEVSRSRYANEVSKS 952
+ + P A ++ + + +V + +V
Sbjct: 254 GSPKMNFLPVKVTATAIDQVQVELPMPNRQQVWLPVESRDVQVG 297
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 160 bits (408), Expect = 1e-44
Identities = 61/243 (25%), Positives = 112/243 (46%), Gaps = 20/243 (8%)
Query: 667 SSVSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYD 726
S + ++ + VT + T +L+ +N I + LA+ G++G GK+++ +I +
Sbjct: 1 SLTTTEVVMENVTAFW-EEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE 59
Query: 727 PTKGLITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGK--ENATMKEAVAA 784
P++G I G +I Q + +I EN++ G + + + A
Sbjct: 60 PSEGKIKHSG-------------RISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKA 106
Query: 785 CKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDS 844
C IS+ + +G+ G LSGGQ+ RI+LARA+ KD + LLD P LD
Sbjct: 107 C---QLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDV 163
Query: 845 E-SESIVQQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLERGGAY 903
+ I + + K+ +T I++ ++ +K A+ I++L +GS G +L +
Sbjct: 164 LTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDF 223
Query: 904 HDL 906
Sbjct: 224 SSK 226
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 158 bits (401), Expect = 1e-43
Identities = 59/242 (24%), Positives = 121/242 (50%), Gaps = 22/242 (9%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
+ ++ VT + LKD K++ G ++A+ G +G+GK++++ +I +P++GK+
Sbjct: 7 VVMENVTAFWEEGGTPV-LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI 65
Query: 1374 MIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNP--KASWAEIEEAAEEAYI 1431
G + + Q + GTI++NI G + + + +A + +
Sbjct: 66 KHSG-------------RISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQ---L 109
Query: 1432 HKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHV 1491
+ IS + +GE G+ LSGGQ+ RI++ARA+ K + + LLD LD+ +EK +
Sbjct: 110 EEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEI 169
Query: 1492 -QDALRKVSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETLLASHLNGVYASLV 1550
+ + K+ T I+V ++ +++A+ I ++ +G+ YG+ L ++S +
Sbjct: 170 FESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNL--QPDFSSKL 227
Query: 1551 RA 1552
Sbjct: 228 MG 229
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 162 bits (411), Expect = 2e-44
Identities = 63/262 (24%), Positives = 130/262 (49%), Gaps = 22/262 (8%)
Query: 1302 KGRKLERSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWL 1361
K ++ ++ ++F+ S VLKD K++ G ++A+ G +G+GK++++ +
Sbjct: 24 KAKQNNNNRKTSNGDDSLSFSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMM 83
Query: 1362 IQRFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNP--KASW 1419
I +P++GK+ G + + Q + GTI++NI +G + +
Sbjct: 84 IMGELEPSEGKIKHSG-------------RISFCSQNSWIMPGTIKENI-IGVSYDEYRY 129
Query: 1420 AEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEA 1479
+ +A + + + IS + +GE G+ LSGGQ+ RI++ARA+ K + + LLD
Sbjct: 130 RSVIKACQ---LEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSP 186
Query: 1480 SSALDLESEKHV-QDALRKVSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETLL 1538
LD+ +EK + + + K+ T I+V ++ +++A+ I ++ +G+ YG+ L
Sbjct: 187 FGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQ 246
Query: 1539 ASHLNGVYASLVRAETEANAFS 1560
++S + + FS
Sbjct: 247 NL--RPDFSSKLMGCDSFDQFS 266
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 155 bits (393), Expect = 6e-42
Identities = 67/295 (22%), Positives = 127/295 (43%), Gaps = 30/295 (10%)
Query: 637 AQGTVAATRV----FEIIDRVPEIDPYNSEGRKLSSVSGKIEFKGVTFAYPSRPETVILR 692
+ V V E + E N+ RK S+ + F + +L+
Sbjct: 1 STTEVVMENVTAFWEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTP-----VLK 55
Query: 693 SLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIG 752
+N I + LA+ G++G GK+++ +I +P++G I G +I
Sbjct: 56 DINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RIS 102
Query: 753 MVGQEPILFATSILENVLMGKE--NATMKEAVAACKAASAHSFISELPLGYDTQVGDRGT 810
Q + +I EN++ G + + AC IS+ + +G+ G
Sbjct: 103 FCSQNSWIMPGTIKENII-GVSYDEYRYRSVIKAC---QLEEDISKFAEKDNIVLGEGGI 158
Query: 811 QLSGGQKQRIALARAMIKDPRILLLDEPTSALDSE-SESIVQQAIDKISVGRTTIVIAHR 869
LSGGQ+ RI+LARA+ KD + LLD P LD + I + + K+ +T I++ +
Sbjct: 159 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSK 218
Query: 870 LATVKNANTIVVLDQGSVVEIGNHRQLLERGGAYHDLVKLASEAVSQPQSKQKDA 924
+ +K A+ I++L +GS G +L + + ++ Q ++++++
Sbjct: 219 MEHLKKADKILILHEGSSYFYGTFSELQNLRPDFSSKLM-GCDSFDQFSAERRNS 272
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 159 bits (405), Expect = 3e-44
Identities = 67/253 (26%), Positives = 124/253 (49%), Gaps = 22/253 (8%)
Query: 671 GKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKG 730
I + TF + +R + L + IP +A+VG G GKS++ + + D +G
Sbjct: 2 NSITVRNATFTW-ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEG 60
Query: 731 LITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGK--ENATMKEAVAACKAA 788
+ + G + V Q+ + S+ EN+L G E + + AC
Sbjct: 61 HVAIKG-------------SVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQAC--- 104
Query: 789 SAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSE-SE 847
+ + LP G T++G++G LSGGQKQR++LARA+ + I L D+P SA+D+ +
Sbjct: 105 ALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGK 164
Query: 848 SIVQQAIDKISV--GRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLERGGAYHD 905
I + I + +T I++ H ++ + + I+V+ G + E+G++++LL R GA+ +
Sbjct: 165 HIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFAE 224
Query: 906 LVKLASEAVSQPQ 918
++ +
Sbjct: 225 FLRTYASHHHHHH 237
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 153 bits (390), Expect = 4e-42
Identities = 71/248 (28%), Positives = 122/248 (49%), Gaps = 22/248 (8%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
I ++ TFT+ T L + G++VA+VG G GKS+++ + D +G V
Sbjct: 4 ITVRNATFTWARSDPPT-LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV 62
Query: 1374 MIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNP-KASWAEIEEAAEEAYIH 1432
I+G A V Q+ + ++R+NI G + + + +
Sbjct: 63 AIKG-------------SVAYVPQQAWIQNDSLRENILFGCQLEEPYYR--SVIQACALL 107
Query: 1433 KFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQ 1492
+ LP G T++GE GV LSGGQKQR+++ARA+ + + L D+ SA+D KH+
Sbjct: 108 PDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIF 167
Query: 1493 D---ALRKVSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETLLASHLNGVYASL 1549
+ + + K T I+V H +S + + ++I V+ G + E GS++ LLA +G +A
Sbjct: 168 ENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLAR--DGAFAEF 225
Query: 1550 VRAETEAN 1557
+R +
Sbjct: 226 LRTYASHH 233
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 152 bits (385), Expect = 4e-41
Identities = 50/242 (20%), Positives = 89/242 (36%), Gaps = 36/242 (14%)
Query: 1314 IELKMVTFTYPSRP-EVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGK 1372
I+LK V T + E L++ L+V G V ++G +GSGK+T++ I P G
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVNG-EKVIILGPNGSGKTTLLRAISGLL-PYSGN 59
Query: 1373 VMIEGVDLREINVKWLRKQTALVGQEPALFAG--TIRDNIALG--NPKASWAEIEEAAE- 1427
+ I G+++R+ +R P + T+ D + L E +
Sbjct: 60 IFINGMEVRK-----IRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKA 114
Query: 1428 ----EAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSAL 1483
E + + + +LS GQ + + A+ ++ LDE +
Sbjct: 115 LKLGEEILRRKLY---------------KLSAGQSVLVRTSLALASQPEIVGLDEPFENV 159
Query: 1484 DLESEKHVQDALRKVSKRATTIVVAHRLST-IREANMIAVVRDGAVVE-YGSHETLLASH 1541
D + +++ K I+V H L A G ++ S LL S
Sbjct: 160 DAARRHVISRYIKEYGK--EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLESS 217
Query: 1542 LN 1543
+
Sbjct: 218 IV 219
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 150 bits (382), Expect = 9e-41
Identities = 47/233 (20%), Positives = 94/233 (40%), Gaps = 24/233 (10%)
Query: 673 IEFKGVTFAYPSRP-ETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGL 731
I+ K V + E L ++NL + K ++G +G GK+T+ I P G
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVNGEKV-IILGPNGSGKTTLLRAISGLL-PYSGN 59
Query: 732 ITLDGHDLKSLQVKWLRTQIGMVGQEPILFA--TSILENVLMGKENATMKEAVAACKAAS 789
I ++G +++ + R I P + ++ + V + +E + + +
Sbjct: 60 IFINGMEVRKI-----RNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFL-EMLK 113
Query: 790 AHSFISELPLGYDTQVGDRG-TQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESES 848
A L ++ R +LS GQ + + A+ P I+ LDEP +D+
Sbjct: 114 A--------LKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRH 165
Query: 849 IVQQAIDKISVGRTTIVIAHRLATVKN-ANTIVVLDQGSVVE-IGNHRQLLER 899
++ + I + G+ I++ H L + G+ ++ + +LLE
Sbjct: 166 VISRYIKEY--GKEGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLES 216
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 142 bits (361), Expect = 9e-38
Identities = 63/245 (25%), Positives = 119/245 (48%), Gaps = 26/245 (10%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
++ + + + Y T L+ +N+ I + A++G +G GKST+F P+ G I
Sbjct: 8 LKVEELNYNYS--DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRI 65
Query: 733 TLDGHDLKSLQ--VKWLRTQIGMVGQEPI--LFATSILENVLMGKENATMKEAVAACKAA 788
D + + + LR IG+V Q+P LF+ S+ ++V G N + E +
Sbjct: 66 LFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVD 125
Query: 789 SAHSF--ISELPLGYDTQVGDRGT-QLSGGQKQRIALARAMIKDPRILLLDEPTSALDSE 845
+A I L D+ T LS GQK+R+A+A ++ +P++L+LDEPT+ LD
Sbjct: 126 NALKRTGIEHL--------KDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPM 177
Query: 846 SESIVQQAIDKI--SVGRTTIVIAHRLATV-KNANTIVVLDQGSVV------EIGNHRQL 896
S + + + ++ +G T I+ H + V + + V+ +G V+ E+ +++
Sbjct: 178 GVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEV 237
Query: 897 LERGG 901
+ +
Sbjct: 238 IRKVN 242
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 136 bits (345), Expect = 1e-35
Identities = 55/239 (23%), Positives = 109/239 (45%), Gaps = 26/239 (10%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
++++ + + Y LK + +K G + A++GG+G GKST+ P+ G++
Sbjct: 8 LKVEELNYNYS--DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRI 65
Query: 1374 MIEGVDL--REINVKWLRKQTALVGQEPA--LFAGTIRDNIALG--NPKASWAEIEEAAE 1427
+ + + + LR+ +V Q+P LF+ ++ +++ G N K EI + +
Sbjct: 66 LFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVD 125
Query: 1428 EAY----IHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSAL 1483
A I LS GQK+R+AIA ++ +VL+LDE ++ L
Sbjct: 126 NALKRTGIEHLKDKPTH-----------CLSFGQKKRVAIAGVLVMEPKVLILDEPTAGL 174
Query: 1484 DLESEKHVQDALRKVSKRA--TTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLA 1539
D + L ++ K T I+ H + + + + V+++G V+ G+ + + A
Sbjct: 175 DPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 233
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 138 bits (351), Expect = 1e-36
Identities = 71/258 (27%), Positives = 123/258 (47%), Gaps = 19/258 (7%)
Query: 672 KIEFKGVTFAYPSRP--ETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTK 729
+IE V+ + E L +++LVI + L + G +G GKST+ ++ +PT
Sbjct: 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTS 61
Query: 730 GLITLDGHDLKSLQVKWLRTQIGMVGQEPI--LFATSILENVLMGKENATMKEAVAACKA 787
G + DG K +R IG+ Q P FA + + V +N
Sbjct: 62 GDVLYDGERKK---GYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVP-LV 117
Query: 788 ASAHSFISELPLGYDTQVGDRGT-QLSGGQKQRIALARAMIKDPRILLLDEPTSALDSES 846
A F+ + DR LSGG+K+R+A+A ++ +P IL+LDEP LD E
Sbjct: 118 KKAMEFVGLDFDSF----KDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREG 173
Query: 847 ESIVQQAIDKI-SVGRTTIVIAHRLATV-KNANTIVVLDQGSVVEIGNHRQLLERGGAYH 904
++ + + ++K ++G+T I+I+H + TV + + +VVL++G V G + LE+ +
Sbjct: 174 KTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK----Y 229
Query: 905 DLVKLASEAVSQPQSKQK 922
D S+ + + K
Sbjct: 230 DPRFFTSKMLVMRRLVLK 247
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 134 bits (340), Expect = 4e-35
Identities = 53/237 (22%), Positives = 102/237 (43%), Gaps = 23/237 (9%)
Query: 1314 IELKMVTFTYPSRP--EVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQG 1371
IE+ V+ + E L++ L + G + + G +GSGKST++ ++ +P G
Sbjct: 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62
Query: 1372 KVMIEGVDLREINVKWLRKQTALVGQEPA--LFAGTIRDNIA-----LGNPKASWAEIEE 1424
V+ +G +R+ + Q P FA + D +A + +
Sbjct: 63 DVLYDG---ERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDR----DPVP 115
Query: 1425 AAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALD 1484
++A +F+ ++ + LSGG+K+R+AIA I+ +L+LDE LD
Sbjct: 116 LVKKAM--EFVGLDFDSFKDR---VPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLD 170
Query: 1485 LESEKHVQDALRKVSKRATTIV-VAHRLSTI-REANMIAVVRDGAVVEYGSHETLLA 1539
E + + + K T++ ++H + T+ + + V+ G V G+ L
Sbjct: 171 REGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLE 227
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 138 bits (349), Expect = 4e-36
Identities = 49/237 (20%), Positives = 99/237 (41%), Gaps = 19/237 (8%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
I+ + + IL+ ++ I L G +G GK+T+ ++ + T G +
Sbjct: 22 IQLDQIGRMKQGKT---ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTV 78
Query: 733 TLDGHDLKSL--QVKWLRTQIGMVGQE---PILFATSILENVLMGKENAT-MKEAVAACK 786
L G + + +R IG V +++ V+ G + + + +
Sbjct: 79 NLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEI 138
Query: 787 AASAHSFISELPLGY--DTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDS 844
AH + + + +G LS G+KQR+ +ARA++ P++L+LDEP + LD
Sbjct: 139 RNEAHQLLKLVGMSAKAQQYIG----YLSTGEKQRVMIARALMGQPQVLILDEPAAGLDF 194
Query: 845 ESESIVQQAIDKIS---VGRTTIVIAHRLATVKNANT-IVVLDQGSVVEIGNHRQLL 897
+ + +D +S I + H + + + I++L G ++ G +L
Sbjct: 195 IARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDIL 251
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 123 bits (311), Expect = 4e-31
Identities = 55/265 (20%), Positives = 114/265 (43%), Gaps = 28/265 (10%)
Query: 1299 DNVKGRKLERSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTV 1358
+ + R + I+L + + +LK ++ G L G +G+GK+T+
Sbjct: 7 HHHSSGLVPRGSHMLIQLDQIGRMKQGKT---ILKKISWQIAKGDKWILYGLNGAGKTTL 63
Query: 1359 IWLIQRFYDPNQGKVMIEGVDLREI--NVKWLRKQTALVGQEPAL---FAGTIRDNIA-- 1411
+ ++ + G V + G ++ + + +R+ V + D +
Sbjct: 64 LNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISG 123
Query: 1412 ----LGNPKASWAEIEEAAEEAYIHKF-ISSLPQGYETQVGESGVQLSGGQKQRIAIARA 1466
+G + EI A + + +S+ + +G LS G+KQR+ IARA
Sbjct: 124 AFKSIGVYQDIDDEIRNEAHQ-LLKLVGMSAK---AQQYIG----YLSTGEKQRVMIARA 175
Query: 1467 ILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATT---IVVAHRLSTIREA-NMIAV 1522
++ +VL+LDE ++ LD + + + L +S T I V H + I + I +
Sbjct: 176 LMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILL 235
Query: 1523 VRDGAVVEYGSHETLLAS-HLNGVY 1546
++DG ++ G+ E +L S +++ +
Sbjct: 236 LKDGQSIQQGAVEDILTSENMSRFF 260
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 137 bits (346), Expect = 6e-35
Identities = 68/235 (28%), Positives = 119/235 (50%), Gaps = 27/235 (11%)
Query: 673 IEFKGVTFAYPSRPETVI-LRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGL 731
I+ +T + T+ L +++L +P+ + ++G SG GKST+ + PT+G
Sbjct: 25 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 84
Query: 732 ITLDGHDLKSLQVKWLRT---QIGMVGQEPILFAT-SILENVLMGKENATMKEAVAACKA 787
+ +DG +L +L L QIGM+ Q L ++ ++ NV + E + +
Sbjct: 85 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 144
Query: 788 ASAHSFISELPLGYDTQVG--DRG----TQLSGGQKQRIALARAMIKDPRILLLDEPTSA 841
L L VG D+ + LSGGQKQR+A+ARA+ +P++LL D+ TSA
Sbjct: 145 TEL------LSL-----VGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSA 193
Query: 842 LDSES-ESIVQ--QAIDKISVGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGN 892
LD + SI++ + I++ +G T ++I H + VK + + V+ G ++E
Sbjct: 194 LDPATTRSILELLKDINR-RLGLTILLITHEMDVVKRICDCVAVISNGELIEQDT 247
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 136 bits (345), Expect = 1e-34
Identities = 65/241 (26%), Positives = 115/241 (47%), Gaps = 39/241 (16%)
Query: 1314 IELKMVTFTYPSR-PEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGK 1372
I+L +T + + L + L V G + ++G SG+GKST+I + P +G
Sbjct: 25 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 84
Query: 1373 VMIEGVDLREINVKWLRKQTALVG---QEPALFAG-TIRDNIAL-----GNPKASWAEIE 1423
V+++G +L ++ L K +G Q L + T+ N+AL PK E++
Sbjct: 85 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPK---DEVK 141
Query: 1424 EAAEE--------AYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLL 1475
E + S LSGGQKQR+AIARA+ +VLL
Sbjct: 142 RRVTELLSLVGLGDKHDSYPS---------------NLSGGQKQRVAIARALASNPKVLL 186
Query: 1476 LDEASSALDLESEKHVQDALRKVSKR-ATTIV-VAHRLSTIRE-ANMIAVVRDGAVVEYG 1532
D+A+SALD + + + + L+ +++R TI+ + H + ++ + +AV+ +G ++E
Sbjct: 187 CDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQD 246
Query: 1533 S 1533
+
Sbjct: 247 T 247
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 128 bits (325), Expect = 3e-32
Identities = 66/247 (26%), Positives = 114/247 (46%), Gaps = 39/247 (15%)
Query: 1304 RKLERSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQ 1363
+ IE V YP ++ +++ G MV L+G SGSGK+T++ LI
Sbjct: 5 HHHHHHGSMTIEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIA 62
Query: 1364 RFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQEPALFAG-TIRDNIALG--NPKASWA 1420
P +G V I G + ++ + ++ LV Q ALF T+ DN++ G +
Sbjct: 63 GLERPTKGDVWIGGKRVTDLPPQ--KRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKD 120
Query: 1421 EIEEAAEEA--------YIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSR 1472
E++ E Y ++F +LSGGQ+QR+A+ARA+ +
Sbjct: 121 EMDARVRELLRFMRLESYANRFPH---------------ELSGGQQQRVALARALAPRPQ 165
Query: 1473 VLLLDEASSALDLESEKHVQDALRKVSKRA--TTIVVAHRLSTIREA----NMIAVVRDG 1526
VLL DE +A+D + + ++ +R+V T++ V H EA + + V+ +G
Sbjct: 166 VLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQE---EALEVADRVLVLHEG 222
Query: 1527 AVVEYGS 1533
V ++G+
Sbjct: 223 NVEQFGT 229
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 125 bits (315), Expect = 6e-31
Identities = 64/227 (28%), Positives = 111/227 (48%), Gaps = 21/227 (9%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
IEF GV YP +R ++ I + + L+G SG GK+T+ LI PTKG +
Sbjct: 15 IEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDV 72
Query: 733 TLDGHDLKSLQVKWLRTQIGMVGQEPILFA-TSILENVLMGKENATMKEAVAACKAASAH 791
+ G + L + + +G+V Q LF ++ +NV G + + +
Sbjct: 73 WIGGKRVTDLPPQ--KRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVREL- 129
Query: 792 SFISELPLGYDTQVGDRG-TQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIV 850
L +R +LSGGQ+QR+ALARA+ P++LL DEP +A+D++ +
Sbjct: 130 -----LRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRREL 184
Query: 851 QQAIDKI--SVGRTTIVIAH----RLATVKNANTIVVLDQGSVVEIG 891
+ + ++ +G T++ + H L A+ ++VL +G+V + G
Sbjct: 185 RTFVRQVHDEMGVTSVFVTHDQEEALEV---ADRVLVLHEGNVEQFG 228
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 2e-31
Identities = 62/204 (30%), Positives = 100/204 (49%), Gaps = 27/204 (13%)
Query: 1341 GGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQEPA 1400
G L+G +G+GKS + LI P++G+V + G D+ + + R+ V Q+ A
Sbjct: 23 GRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGFVPQDYA 80
Query: 1401 LFAG-TIRDNIALGNPKASWAEIEEAAEEA----YIHKFISSLPQGYETQVGESGVQLSG 1455
LF ++ NIA G E + E I + P +LSG
Sbjct: 81 LFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPA-----------RLSG 129
Query: 1456 GQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKR--ATTIVVAHRLST 1513
G++QR+A+ARA++ R+LLLDE SA+DL+++ + + LR V + + V H L
Sbjct: 130 GERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI- 188
Query: 1514 IREA-NM---IAVVRDGAVVEYGS 1533
EA + +AV+ +G +VE G
Sbjct: 189 --EAAMLADEVAVMLNGRIVEKGK 210
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 2e-28
Identities = 57/196 (29%), Positives = 91/196 (46%), Gaps = 21/196 (10%)
Query: 704 LALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIGMVGQEPILFA- 762
L+G +G GKS LI P +G + L+G D+ L + R IG V Q+ LF
Sbjct: 27 CVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGFVPQDYALFPH 84
Query: 763 TSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRG-TQLSGGQKQRIA 821
S+ N+ G N E + + DR +LSGG++QR+A
Sbjct: 85 LSVYRNIAYGLRNVERVERDRRVREM--------AEKLGIAHLLDRKPARLSGGERQRVA 136
Query: 822 LARAMIKDPRILLLDEPTSALDSESESIVQQAIDKI--SVGRTTIVIAH----RLATVKN 875
LARA++ PR+LLLDEP SA+D +++ ++ + + + + + H
Sbjct: 137 LARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAML--- 193
Query: 876 ANTIVVLDQGSVVEIG 891
A+ + V+ G +VE G
Sbjct: 194 ADEVAVMLNGRIVEKG 209
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 3e-31
Identities = 62/226 (27%), Positives = 101/226 (44%), Gaps = 34/226 (15%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
+ + + F Y + + + LN + LA++G +G GKST+ L+ + P +G I
Sbjct: 5 LSVENLGFYYQAEN--FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI 62
Query: 733 TLDGHDLKSLQVKWLRTQIGMVGQEPIL-FATSILENVLMG-----KENATMKEA-VAAC 785
+ IG V Q FA S+L+ VLMG A K
Sbjct: 63 EVYQ-------------SIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVA 109
Query: 786 KAASAHSFISELPLGYDTQVGDRG-TQLSGGQKQRIALARAMIKDPRILLLDEPTSALDS 844
A + ++ L R T LSGGQ+Q I +ARA+ + +++LLDEPTSALD
Sbjct: 110 MQALDYLNLTHL--------AKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDL 161
Query: 845 ESESIVQQAIDKISV--GRTTIVIAHRLATVKN-ANTIVVLDQGSV 887
++ IV + ++ T + H+ V AN ++L++ +
Sbjct: 162 ANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQNF 207
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 117 bits (296), Expect = 2e-29
Identities = 52/252 (20%), Positives = 105/252 (41%), Gaps = 48/252 (19%)
Query: 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGK 1372
+ ++ + F Y + + + + G ++A++G +G GKST++ L+ + P QGK
Sbjct: 4 ALSVENLGFYYQAEN--FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGK 61
Query: 1373 VMIEGVDLREINVKWLRKQTALVGQEP-ALFAGTIRDNIALG-NPKASW-----AEIEEA 1425
+ + + V Q + FA ++ D + +G + + + +
Sbjct: 62 IEV-------------YQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQV 108
Query: 1426 AEEA--------YIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLD 1477
A +A + + LSGGQ+Q I IARAI +++LLD
Sbjct: 109 AMQALDYLNLTHLAKREFT---------------SLSGGQRQLILIARAIASECKLILLD 153
Query: 1478 EASSALDLESEKHVQDALRKVSKRA--TTIVVAHRLST-IREANMIAVVRDGAVVEYGSH 1534
E +SALDL ++ V L +++ T + H+ + + AN ++ +
Sbjct: 154 EPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQNFKFGETR 213
Query: 1535 ETLLASHLNGVY 1546
L + +L ++
Sbjct: 214 NILTSENLTALF 225
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 120 bits (303), Expect = 3e-30
Identities = 67/222 (30%), Positives = 115/222 (51%), Gaps = 17/222 (7%)
Query: 1328 EVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDL--REINV 1385
+ VLK + ++ G +V ++G SGSGKST + + D ++G+++I+G++L ++ N+
Sbjct: 36 SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNL 95
Query: 1386 KWLRKQTALVGQEPALFAG-TIRDNIALGNP----KASWAEIEEAAEEAYIHKFISSLPQ 1440
+R++ +V Q LF T+ +NI L P K + E A E + K
Sbjct: 96 NKVREEVGMVFQRFNLFPHMTVLNNITLA-PMKVRKWPREKAEAKAME-LLDKV------ 147
Query: 1441 GYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSK 1500
G + + LSGGQ QR+AIARA+ +++L DE +SALD E V +++++
Sbjct: 148 GLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN 207
Query: 1501 RATT-IVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLAS 1540
T +VV H + RE + + + G ++E G E L
Sbjct: 208 EGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 249
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 7e-30
Identities = 66/235 (28%), Positives = 112/235 (47%), Gaps = 34/235 (14%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
I+ + ++ +L+ +N+ I + + ++G SG GKST + D +G I
Sbjct: 25 IDVHQLKKSFG---SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEI 81
Query: 733 TLDGHDL--KSLQVKWLRTQIGMVGQEPILFA-TSILENVLMG-KENATMKEAVAACKAA 788
+DG +L K + +R ++GMV Q LF ++L N+ + + A KA
Sbjct: 82 IIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKA- 140
Query: 789 SAHSFISELPLGYDTQVG--DRG----TQLSGGQKQRIALARAMIKDPRILLLDEPTSAL 842
+ +VG D+ LSGGQ QR+A+ARA+ +P+I+L DEPTSAL
Sbjct: 141 ----------MELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSAL 190
Query: 843 DSES-----ESIVQQAIDKISVGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIG 891
D E + Q A + G T +V+ H + + + ++ +D G ++E G
Sbjct: 191 DPEMVGEVLSVMKQLANE----GMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEG 241
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 4e-30
Identities = 59/240 (24%), Positives = 110/240 (45%), Gaps = 42/240 (17%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
+ + ++ ++ + VL D L + G ++ ++G SG GK+T++ + F P+ G++
Sbjct: 5 LHIGHLSKSFQN---TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEI 61
Query: 1374 MIEGVDLREINVKWL---RKQTALVGQEPALFAG-TIRDNIA--LGNPKASWAEIEEAAE 1427
+ G + N L ++ + QE LF T+ NIA LGN K A+ + E
Sbjct: 62 SLSGKTIFSKNT-NLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIE 120
Query: 1428 EA--------YIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEA 1479
++ +LSGGQ+QR A+ARA+ ++LLDE
Sbjct: 121 AMLELTGISELAGRYPH---------------ELSGGQQQRAALARALAPDPELILLDEP 165
Query: 1480 SSALDLESEKHVQDALRKVSKRA--TTIVVAH----RLSTIREANMIAVVRDGAVVEYGS 1533
SALD + + +++ + + + + V+H L A+ IAV++ G +++ S
Sbjct: 166 FSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQY---ADRIAVMKQGRILQTAS 222
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 8e-27
Identities = 59/238 (24%), Positives = 115/238 (48%), Gaps = 24/238 (10%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
+ ++ ++ + T +L ++L + + L ++G SG GK+T+ + F P G I
Sbjct: 5 LHIGHLSKSFQN---TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEI 61
Query: 733 TLDGHDLKSLQVKWL---RTQIGMVGQEPILFA-TSILENVLMGKENATMKEAVAACKAA 788
+L G + + L ++G + QE +LF ++ N+ G N + A +
Sbjct: 62 SLSGKTI-FSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIE 120
Query: 789 SAHSFISELPLGYDTQVGDRG-TQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESE 847
+ + ++ R +LSGGQ+QR ALARA+ DP ++LLDEP SALD +
Sbjct: 121 AMLELT-GIS-----ELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLR 174
Query: 848 SIVQQAIDKI--SVGRTTIVIAH----RLATVKNANTIVVLDQGSVVEIGNHRQLLER 899
+++ + + G++ + ++H L A+ I V+ QG +++ + +L +
Sbjct: 175 RQIREDMIAALRANGKSAVFVSHDREEALQY---ADRIAVMKQGRILQTASPHELYRQ 229
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 4e-30
Identities = 54/229 (23%), Positives = 100/229 (43%), Gaps = 24/229 (10%)
Query: 1330 TVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLR 1389
T L +V+ G ++ LVG +G+GKST++ + +G + G L + L
Sbjct: 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLA 72
Query: 1390 KQTALVGQEPAL-FAGTIRDNIALG-NPKASWAEIEEAAEEAYIHKFISSLPQGYETQVG 1447
A + Q+ FA + + L + K + + A + L +
Sbjct: 73 LHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDK---LGRSTNQ--- 126
Query: 1448 ESGVQLSGGQKQRIAIARAIL-------KGSRVLLLDEASSALDLESEKHVQDALRKVSK 1500
LSGG+ QR+ +A +L ++LLLDE ++LD+ + + L +S+
Sbjct: 127 -----LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQ 181
Query: 1501 RATTIVVA-HRLS-TIREANMIAVVRDGAVVEYGS-HETLLASHLNGVY 1546
+ IV++ H L+ T+R A+ +++ G ++ G E L +L Y
Sbjct: 182 QGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPNLAQAY 230
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 7e-28
Identities = 59/228 (25%), Positives = 99/228 (43%), Gaps = 35/228 (15%)
Query: 687 ETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKW 746
E+ L L+ + + + L LVG +G GKST+ A + KG I G L++
Sbjct: 12 ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATK 70
Query: 747 LRTQIGMVGQEPIL-FATSILENVLMGKENATMKEAVA-ACKAASAHSFISELPLGYDTQ 804
L + Q+ FAT + + + + + T E + A +
Sbjct: 71 LALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDK----------- 119
Query: 805 VGDRG-TQLSGGQKQRIALARAM-------IKDPRILLLDEPTSALDSESESIVQQ-AID 855
R QLSGG+ QR+ LA + ++LLLDEP ++LD + QQ A+D
Sbjct: 120 -LGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLD-----VAQQSALD 173
Query: 856 KI-----SVGRTTIVIAHRLA-TVKNANTIVVLDQGSVVEIGNHRQLL 897
KI G ++ +H L T+++A+ +L G ++ G ++L
Sbjct: 174 KILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVL 221
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 119 bits (302), Expect = 4e-30
Identities = 66/232 (28%), Positives = 120/232 (51%), Gaps = 33/232 (14%)
Query: 690 ILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSL------- 742
+L+ ++L + ++++G+SG GKST I P++G I ++G ++ +
Sbjct: 21 VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQL 80
Query: 743 ------QVKWLRTQIGMVGQEPILFA-TSILENVLMGKENATMKEAVAACKAASAHSFIS 795
Q++ LRT++ MV Q L++ ++LENV+ A + A
Sbjct: 81 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERA------- 133
Query: 796 ELPLGYDTQVG--DRG-----TQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESES 848
L Y +VG +R LSGGQ+QR+++ARA+ +P +LL DEPTSALD E
Sbjct: 134 ---LKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVG 190
Query: 849 IVQQAIDKISV-GRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLE 898
V + + +++ G+T +V+ H + ++ ++ ++ L QG + E G+ Q+
Sbjct: 191 EVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFG 242
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 114 bits (289), Expect = 3e-28
Identities = 63/240 (26%), Positives = 111/240 (46%), Gaps = 41/240 (17%)
Query: 1328 EVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLR------ 1381
VLK L+ + G +++++G SGSGKST + I P++G +++ G ++
Sbjct: 18 GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKD 77
Query: 1382 -------EINVKWLRKQTALVGQEPALFAG-TIRDNIALGNP----KASWAEIEEAAEEA 1429
+ ++ LR + +V Q L++ T+ +N+ P S + E A +
Sbjct: 78 GQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEA-PIQVLGLSKHDARERALK- 135
Query: 1430 YIHKFISSLPQGYETQVGESG-------VQLSGGQKQRIAIARAILKGSRVLLLDEASSA 1482
Y +VG V LSGGQ+QR++IARA+ VLL DE +SA
Sbjct: 136 ------------YLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSA 183
Query: 1483 LDLESEKHVQDALRKVSKRATT-IVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLAS 1540
LD E V ++++++ T +VV H + R ++ + + G + E G E + +
Sbjct: 184 LDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGN 243
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 118 bits (299), Expect = 6e-30
Identities = 71/241 (29%), Positives = 119/241 (49%), Gaps = 21/241 (8%)
Query: 673 IEFKGVTFAYPSRPETV-ILRSLNLVIPSSKTLALVGTSGGGKSTVFALI---ERFYDPT 728
++ K VT Y E + L+++NL I + ++++G SG GKST+ +I ++ PT
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK---PT 58
Query: 729 KGLITLDGHDLKSL---QVKWLR-TQIGMVGQEPILFA-TSILENV---LMGKENATMKE 780
+G + +D L ++ +R +IG V Q+ L + LENV L+ K M
Sbjct: 59 EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSG 118
Query: 781 AVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTS 840
+A + L + + QLSGGQ+QR+A+ARA+ +P I+L D+PT
Sbjct: 119 EERRKRALEC---LKMAELE-ERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTW 174
Query: 841 ALDSESESIVQQAIDKI--SVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLE 898
ALDS++ + Q + K+ G+T +V+ H + + I+ L G V R +
Sbjct: 175 ALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRGFDD 234
Query: 899 R 899
R
Sbjct: 235 R 235
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 1e-25
Identities = 66/244 (27%), Positives = 112/244 (45%), Gaps = 47/244 (19%)
Query: 1314 IELKMVTFTYPS-RPEVTVLKDFCLKVKGGSMVALVGGSGSGKST---VIWLIQRFYDPN 1369
++LK VT TY + LK+ L +K G V+++G SGSGKST +I + + P
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK---PT 58
Query: 1370 QGKVMIEGVDLREINVK---WLRKQTA--------LVGQEPALFAGTIRDNIAL-----G 1413
+G+V I+ + +++ +R+ L+ AL +N+ L
Sbjct: 59 EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTAL------ENVELPLIFKY 112
Query: 1414 NPKASWAEIEEAAEEAYI-----HKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAIL 1468
S E + A E +F + P QLSGGQ+QR+AIARA+
Sbjct: 113 RGAMSGEERRKRALECLKMAELEERFANHKPN-----------QLSGGQQQRVAIARALA 161
Query: 1469 KGSRVLLLDEASSALDLESEKHVQDALRKVSKRA--TTIVVAHRLSTIREANMIAVVRDG 1526
++L D+ + ALD ++ + + L+K+++ T +VV H ++ R I ++DG
Sbjct: 162 NNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDG 221
Query: 1527 AVVE 1530
V
Sbjct: 222 EVER 225
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 1e-29
Identities = 49/227 (21%), Positives = 87/227 (38%), Gaps = 31/227 (13%)
Query: 672 KIEFKGVTFAYPS---RPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPT 728
+ + F+YPS +L S+ L ++G +G GK+T+ L+ P
Sbjct: 346 QNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD 405
Query: 729 KGLITLDGHDLKSLQVKWLRTQIGMVGQEPI--LFATSILENVLMGKENATMKEAVAACK 786
+G D+ L V +I + LF I L + + + +
Sbjct: 406 EG------QDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLR--- 456
Query: 787 AASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSES 846
I ++ D +V LSGG+ QR+A+ A+ I L+DEP++ LDSE
Sbjct: 457 -------IDDI---IDQEVQH----LSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQ 502
Query: 847 ESIVQQAIDKI--SVGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEI 890
I + I + +T ++ H A+ ++V +
Sbjct: 503 RIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNA 549
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 123 bits (311), Expect = 6e-29
Identities = 54/245 (22%), Positives = 94/245 (38%), Gaps = 33/245 (13%)
Query: 1304 RKLERSKPLGIELKMVTFTYPS---RPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIW 1360
R + ++ L + F+YPS VL + ++ ++G +G+GK+T+I
Sbjct: 337 RIADATEDLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIK 396
Query: 1361 LIQRFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQEP--ALFAGTIRDNIALGNPKAS 1418
L+ P++G+ + ++NV ++ A LF IR NP+
Sbjct: 397 LLAGALKPDEGQD------IPKLNVSMKPQKIAPKFPGTVRQLFFKKIRG--QFLNPQ-- 446
Query: 1419 WAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDE 1478
+ + I I Q LSGG+ QR+AI A+ + + L+DE
Sbjct: 447 --FQTDVVKPLRIDDIIDQEVQ-----------HLSGGELQRVAIVLALGIPADIYLIDE 493
Query: 1479 ASSALDLESEKHVQDALRKVSKRA--TTIVVAHRLSTIRE-ANMIAVVRDGAVVE--YGS 1533
S+ LD E +R+ T +V H A+ + V +
Sbjct: 494 PSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARA 553
Query: 1534 HETLL 1538
E+LL
Sbjct: 554 PESLL 558
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 121 bits (305), Expect = 3e-28
Identities = 52/234 (22%), Positives = 90/234 (38%), Gaps = 25/234 (10%)
Query: 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALI--------ER 723
VT Y + L L P + L LVGT+G GKST ++ R
Sbjct: 77 TNLEAHVTHRYS--ANSFKLHRLPTPRPG-QVLGLVGTNGIGKSTALKILAGKQKPNLGR 133
Query: 724 FYDP---TKGLITLDGHDLKSLQVKWLRTQIGMVGQEPI--LFATSILENVLMGKENATM 778
F DP + + G +L++ K L I + + +I V E +
Sbjct: 134 FDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKL 193
Query: 779 KEAVAACKAASAHSFISELPLGYDTQVGDRG-TQLSGGQKQRIALARAMIKDPRILLLDE 837
+ + I L L V R +LSGG+ QR A+ + +++ + + DE
Sbjct: 194 RMEKSPEDVKRY---IKILQL---ENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDE 247
Query: 838 PTSALDSESESIVQQAIDKI-SVGRTTIVIAHRLATVKN-ANTIVVLDQGSVVE 889
P+S LD + Q I + + + I + H L+ + ++ + ++ V
Sbjct: 248 PSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSVY 301
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 2e-25
Identities = 44/239 (18%), Positives = 88/239 (36%), Gaps = 37/239 (15%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
VT Y + + G ++ LVG +G GKST + ++ PN G+
Sbjct: 78 NLEAHVTHRYS---ANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRF 134
Query: 1374 MIE-----------GVDLREINVKWLRK------QTALVGQEPALFAGTIR---DNIALG 1413
G +L+ K L + V P G ++ + + L
Sbjct: 135 DDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKL- 193
Query: 1414 NPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRV 1473
+ S +++ + + + + +LSGG+ QR AI + ++ + V
Sbjct: 194 RMEKSPEDVKRYIKILQLENVLKRDIE-----------KLSGGELQRFAIGMSCVQEADV 242
Query: 1474 LLLDEASSALDLESEKHVQDALRKVSKRATTIVVA-HRLSTIRE-ANMIAVVRDGAVVE 1530
+ DE SS LD++ + +R + ++ H LS + ++ + ++ V
Sbjct: 243 YMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSVY 301
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 122 bits (308), Expect = 1e-28
Identities = 59/287 (20%), Positives = 103/287 (35%), Gaps = 33/287 (11%)
Query: 676 KGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVF-----ALIERFYD-PTK 729
+ Y +L L +V + +VG +G GK+T LI +
Sbjct: 95 EDCVHRY--GVNAFVLYRLPIVKDG-MVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDS 151
Query: 730 GLITLDGHDLKSLQVKWLRTQ---IGMVGQEPILFATSILENVLMGKENATMKEAVAACK 786
+ LQ + R + I V + +L + GK + + V
Sbjct: 152 WDNVIRAFRGNELQNYFERLKNGEIRPVVKPQY---VDLLPKAVKGKVRELL-KKVDEVG 207
Query: 787 AASAHSFISELPLGYDTQVGDRG-TQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSE 845
EL V DR QLSGG+ QR+A+A A+++ DEP+S LD
Sbjct: 208 KFEEVVKELELE-----NVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIR 262
Query: 846 SESIVQQAIDKI-SVGRTTIVIAHRLATVKN-ANTIVVLD-----QGSVVEIGNHRQLLE 898
V + I ++ + G+ +V+ H LA + ++ I V+ G + R +
Sbjct: 263 QRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVYGIFSKPKGTRNGIN 322
Query: 899 RGGAYHDLVKLASEAVSQPQSKQKDAKRGIEFSIYEKSVIEVSRSRY 945
+ L E V + + K + ++++E R
Sbjct: 323 ---EFLQG-YLKDENVRFRPYEIRFTKLSERVDVERETLVEYPRLVK 365
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 115 bits (291), Expect = 2e-26
Identities = 53/243 (21%), Positives = 99/243 (40%), Gaps = 29/243 (11%)
Query: 652 RVPEIDPYNSEGRKLSSVSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSG 711
R EI R +E+ + Y S L I + + +VG +G
Sbjct: 337 RPYEIRFTKLSERVDVERETLVEYPRLVKDYGSF----KLEVEPGEIRKGEVIGIVGPNG 392
Query: 712 GGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLM 771
GK+T ++ +PT+G + D + + ++++ + E L + +
Sbjct: 393 IGKTTFVKMLAGVEEPTEGKVEWDLT--VAYKPQYIKAEYEGTVYE--LLSKIDSSKLNS 448
Query: 772 GKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPR 831
+ + + I +L YD V LSGG+ QR+A+A +++D
Sbjct: 449 NFYKTELLKPL----------GIIDL---YDRNVE----DLSGGELQRVAIAATLLRDAD 491
Query: 832 ILLLDEPTSALDSESESIVQQAIDKI--SVGRTTIVIAHRLATVKN-ANTIVVLDQGSVV 888
I LLDEP++ LD E V +AI + +T +V+ H + + ++ ++V + G
Sbjct: 492 IYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFE-GEPG 550
Query: 889 EIG 891
G
Sbjct: 551 RHG 553
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 7e-24
Identities = 54/248 (21%), Positives = 109/248 (43%), Gaps = 32/248 (12%)
Query: 1289 LQITKRKPLIDNVKGRKLERSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALV 1348
++ + + R + L +E + Y S L+ +++ G ++ +V
Sbjct: 334 VRFRPYEIRFTKLSERVDVERETL-VEYPRLVKDYGSF----KLEVEPGEIRKGEVIGIV 388
Query: 1349 GGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQEPAL-FAGTIR 1407
G +G GK+T + ++ +P +GKV + A Q + GT+
Sbjct: 389 GPNGIGKTTFVKMLAGVEEPTEGKVEWDL-------------TVAYKPQYIKAEYEGTVY 435
Query: 1408 DNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAI 1467
+ ++ K +++ + + K + + Y+ V + LSGG+ QR+AIA +
Sbjct: 436 ELLS----KIDSSKLNSNFYKTELLKPLG-IIDLYDRNVED----LSGGELQRVAIAATL 486
Query: 1468 LKGSRVLLLDEASSALDLESEKHVQDALRKVSKRA--TTIVVAHRLSTIRE-ANMIAVVR 1524
L+ + + LLDE S+ LD+E V A+R + ++ T +VV H + I ++ + V
Sbjct: 487 LRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVF- 545
Query: 1525 DGAVVEYG 1532
+G +G
Sbjct: 546 EGEPGRHG 553
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 2e-23
Identities = 51/237 (21%), Positives = 91/237 (38%), Gaps = 47/237 (19%)
Query: 1319 VTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVI-----WLIQRFYD-PNQGK 1372
Y + VK G +V +VG +G+GK+T + LI + +
Sbjct: 97 CVHRYG---VNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWD 153
Query: 1373 VMIEGVDLREINVKWLRK----------QTALVGQEPALFAGTIRDNIALGNPKASWAEI 1422
+I E+ + + + V P G +R+ + + + E+
Sbjct: 154 NVIRAFRGNELQ-NYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEV 212
Query: 1423 EEAAE-----EAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLD 1477
+ E + +H QLSGG+ QR+AIA A+L+ + D
Sbjct: 213 VKELELENVLDRELH-------------------QLSGGELQRVAIAAALLRKAHFYFFD 253
Query: 1478 EASSALDLESEKHVQDALRKVSKRATTIVVA-HRLSTIRE-ANMIAVVRDGAVVEYG 1532
E SS LD+ V +R+++ ++V H L+ + +++I VV G YG
Sbjct: 254 EPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVY-GEPGVYG 309
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 117 bits (296), Expect = 2e-28
Identities = 62/237 (26%), Positives = 116/237 (48%), Gaps = 44/237 (18%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
IE++ ++ + + L + LKV+ G ++G +G+GK+ + LI F+ P+ G++
Sbjct: 2 IEIESLSRKWKN----FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 1374 MIEGVDL-------REINVKWLRKQTALVGQEPALFAG-TIRDNIALG--NPKASWAE-I 1422
+++G D+ +I V Q +LF ++ N+ G K + +
Sbjct: 58 LLDGKDVTDLSPEKHDIAF---------VYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRV 108
Query: 1423 EEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSA 1482
+ A + I + P LSGG++QR+A+ARA++ ++LLLDE SA
Sbjct: 109 LDTARDLKIEHLLDRNPL-----------TLSGGEQQRVALARALVTNPKILLLDEPLSA 157
Query: 1483 LDLESEKHVQDALRKVSKR--ATTIVVAHRLSTIREA-NM---IAVVRDGAVVEYGS 1533
LD ++++ ++ L + K+ T + + H + EA M IAVV DG +++ G
Sbjct: 158 LDPRTQENAREMLSVLHKKNKLTVLHITHDQT---EARIMADRIAVVMDGKLIQVGK 211
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 111 bits (281), Expect = 2e-26
Identities = 64/235 (27%), Positives = 114/235 (48%), Gaps = 26/235 (11%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
IE + ++ + + L +L+L + S + ++G +G GK+ LI F+ P G I
Sbjct: 2 IEIESLSRKW----KNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 733 TLDGHDLKSLQVKWLRTQIGMVGQEPILFA-TSILENVLMGKENATMKEAVAACKAASAH 791
LDG D+ L + + I V Q LF ++ +N+ G MK+ +
Sbjct: 58 LLDGKDVTDLSPE--KHDIAFVYQNYSLFPHMNVKKNLEFGMR---MKKIKDPKRVLDTA 112
Query: 792 SFISELPLGYDTQVGDRG-TQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIV 850
+ ++ + DR LSGG++QR+ALARA++ +P+ILLLDEP SALD ++
Sbjct: 113 RDL-KI-----EHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENA 166
Query: 851 QQAIDKI--SVGRTTIVIAH----RLATVKNANTIVVLDQGSVVEIGNHRQLLER 899
++ + + T + I H A+ I V+ G ++++G ++ E+
Sbjct: 167 REMLSVLHKKNKLTVLHITHDQTEARIM---ADRIAVVMDGKLIQVGKPEEIFEK 218
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 3e-27
Identities = 57/246 (23%), Positives = 101/246 (41%), Gaps = 35/246 (14%)
Query: 652 RVPEIDPYNSEGRKLSSVSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSG 711
R EI + R + + + Y S L I + + +VG +G
Sbjct: 267 RPYEIKFTKTGERVEIERETLVTYPRLVKDYGSF----RLEVEPGEIKKGEVIGIVGPNG 322
Query: 712 GGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLM 771
GK+T ++ +PT+G I D Q + G V + L +
Sbjct: 323 IGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYE-GTVYE---LLSKIDAS---- 374
Query: 772 GKENATMKEAVAACKAASAHSFISEL--PLGYDTQVGDRG-TQLSGGQKQRIALARAMIK 828
+++ + +EL PLG + DR +LSGG+ QR+A+A +++
Sbjct: 375 ---------------KLNSNFYKTELLKPLGII-DLYDREVNELSGGELQRVAIAATLLR 418
Query: 829 DPRILLLDEPTSALDSESESIVQQAIDKIS--VGRTTIVIAHRLATVKN-ANTIVVLDQG 885
D I LLDEP++ LD E V +AI + +T +V+ H + + ++ ++V + G
Sbjct: 419 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFE-G 477
Query: 886 SVVEIG 891
+ G
Sbjct: 478 EPGKYG 483
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 1e-25
Identities = 53/228 (23%), Positives = 92/228 (40%), Gaps = 25/228 (10%)
Query: 676 KGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVF-----ALIERFYDP--- 727
+ Y +L L +V + +VG +G GKST LI
Sbjct: 25 EDCVHRYG--VNAFVLYRLPVVKEG-MVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDS 81
Query: 728 -TKGLITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACK 786
+ G++L++ K +I V + ++ + GK +K+A K
Sbjct: 82 WDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQY---VDLIPKAVKGKVIELLKKADETGK 138
Query: 787 AASAHSFISELPLGYDTQVGDRG-TQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSE 845
+ L L V +R LSGG+ QR+A+A A++++ DEP+S LD
Sbjct: 139 LEEV---VKALEL---ENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIR 192
Query: 846 SESIVQQAIDKI-SVGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIG 891
+AI ++ G++ +V+ H LA + ++ I V+ G G
Sbjct: 193 QRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVV-YGEPGVYG 239
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 5e-25
Identities = 52/253 (20%), Positives = 104/253 (41%), Gaps = 33/253 (13%)
Query: 1285 IPAVLQITKRKPLIDNVKGRKLERSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSM 1344
+ + + G ++E + + + Y S L+ ++K G +
Sbjct: 259 LKDENVRFRPYEIKFTKTGERVEIERETLVTYPRLVKDYGSF----RLEVEPGEIKKGEV 314
Query: 1345 VALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQEPALFAG 1404
+ +VG +G GK+T + ++ +P +GK+ + V + + + G
Sbjct: 315 IGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDL------TVAYKPQYIKADYE------G 362
Query: 1405 TIRDNIA--LGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIA 1462
T+ + ++ + S E + I +LSGG+ QR+A
Sbjct: 363 TVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVN-----------ELSGGELQRVA 411
Query: 1463 IARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRA--TTIVVAHRLSTIRE-ANM 1519
IA +L+ + + LLDE S+ LD+E V A+R + ++ T +VV H + I ++
Sbjct: 412 IAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDR 471
Query: 1520 IAVVRDGAVVEYG 1532
+ V +G +YG
Sbjct: 472 LMVF-EGEPGKYG 483
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 1e-22
Identities = 49/211 (23%), Positives = 89/211 (42%), Gaps = 32/211 (15%)
Query: 1339 VKGGSMVALVGGSGSGKSTVIWLIQRFYDPN------QGKVMIEGVDLREINVKWLRKQT 1392
VK G +V +VG +G+GKST + ++ PN +I E+ + + +
Sbjct: 44 VKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKN 103
Query: 1393 ALVGQ---------EPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYE 1443
+ P G + + + ++EE + + + Q
Sbjct: 104 GEIRPVVKPQYVDLIPKAVKGKVIELL---KKADETGKLEEVVKALELENVLEREIQ--- 157
Query: 1444 TQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRAT 1503
LSGG+ QR+AIA A+L+ + DE SS LD+ + A+R++S+
Sbjct: 158 --------HLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGK 209
Query: 1504 TIVVA-HRLSTIRE-ANMIAVVRDGAVVEYG 1532
+++V H L+ + +++I VV G YG
Sbjct: 210 SVLVVEHDLAVLDYLSDIIHVVY-GEPGVYG 239
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 109 bits (276), Expect = 5e-27
Identities = 56/223 (25%), Positives = 103/223 (46%), Gaps = 14/223 (6%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
+ + + IL+ ++L + + ++++G SG GKST+ ++ PT+G +
Sbjct: 5 LRAENIKKVIRGYE---ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKV 61
Query: 733 TLDGHDLKSLQVKWL----RTQIGMVGQEPILFA-TSILENVLMGKENATMKEAVAACKA 787
L+G ++ K L ++G V Q L + LENV++ + A +
Sbjct: 62 FLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERG 121
Query: 788 ASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESE 847
S LG ++ + +LSGG++QR+A+ARA+ +P +L DEPT LDS +
Sbjct: 122 EYLLSE-----LGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANT 176
Query: 848 SIVQQAIDKI-SVGRTTIVIAHRLATVKNANTIVVLDQGSVVE 889
V KI G + +++ H + + + + G VV
Sbjct: 177 KRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVG 219
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 2e-25
Identities = 66/238 (27%), Positives = 106/238 (44%), Gaps = 44/238 (18%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
+ + + +LK L VK G V+++G SGSGKST+++++ P +GKV
Sbjct: 5 LRAENIKKVIR---GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKV 61
Query: 1374 MIEGVDLREINVK---WLRKQTA--------LVGQEPALFAGTIRDNIAL-----GNPKA 1417
+EG ++ N K LR + L+ + AL +N+ + G PK
Sbjct: 62 FLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTAL------ENVIVPMLKMGKPKK 115
Query: 1418 SWAEIEEAAEEAY----IHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRV 1473
E +E E + +S P +LSGG++QR+AIARA+ +
Sbjct: 116 ---EAKERGEYLLSELGLGDKLSRKPY-----------ELSGGEQQRVAIARALANEPIL 161
Query: 1474 LLLDEASSALDLESEKHVQDALRKVSKRATTIV-VAHRLSTIREANMIAVVRDGAVVE 1530
L DE + LD + K V D K+++ T+IV V H + ++DG VV
Sbjct: 162 LFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVG 219
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 6e-27
Identities = 50/250 (20%), Positives = 91/250 (36%), Gaps = 31/250 (12%)
Query: 645 RVFEIIDRVPEIDPYNSEGRKLSSVSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTL 704
R EI + E+ + + + K + L N + +
Sbjct: 246 RPDEIKFMLKEVSDLDLSKDLKTKMKWTKIIK--------KLGDFQLVVDNGEAKEGEII 297
Query: 705 ALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIGMVGQEPILFATS 764
++G +G GK+T ++ +G +T + L + G V Q
Sbjct: 298 GILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQ-------- 349
Query: 765 ILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALAR 824
LEN + + K + H + LSGG+ Q++ +A
Sbjct: 350 YLENASKDALSTSSWFFEEVTKRLNLHRLLESNV-----------NDLSGGELQKLYIAA 398
Query: 825 AMIKDPRILLLDEPTSALDSESESIVQQAIDKISV--GRTTIVIAHRLATVKN-ANTIVV 881
+ K+ + +LD+P+S LD E IV +AI +++ T +I H L+ A+ I+V
Sbjct: 399 TLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIV 458
Query: 882 LDQGSVVEIG 891
G + G
Sbjct: 459 FK-GEPEKAG 467
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 2e-26
Identities = 49/244 (20%), Positives = 94/244 (38%), Gaps = 27/244 (11%)
Query: 1292 TKRKPLIDNVKGRKLERSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGS 1351
+ K ++ V L + ++ + L + K G ++ ++G +
Sbjct: 248 DEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDF----QLVVDNGEAKEGEIIGILGPN 303
Query: 1352 GSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIA 1411
G GK+T ++ ++G V E L + V Q +D ++
Sbjct: 304 GIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQ---YLENASKDALS 360
Query: 1412 LGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGS 1471
+ EE + +H+ + S LSGG+ Q++ IA + K +
Sbjct: 361 TSSWF-----FEEVTKRLNLHRLLESNVN-----------DLSGGELQKLYIAATLAKEA 404
Query: 1472 RVLLLDEASSALDLESEKHVQDALRKVSKRA--TTIVVAHRLSTIRE-ANMIAVVRDGAV 1528
+ +LD+ SS LD+E V A+++V++ T ++ H LS A+ I V G
Sbjct: 405 DLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVF-KGEP 463
Query: 1529 VEYG 1532
+ G
Sbjct: 464 EKAG 467
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 3e-26
Identities = 46/237 (19%), Positives = 88/237 (37%), Gaps = 25/237 (10%)
Query: 676 KGVTFAYPSRPETVILRSLNLVIPSS-KTLALVGTSGGGKSTVFALIERFYDPTKGLITL 734
V Y + + L P + L ++G +G GK+TV ++ P G
Sbjct: 3 GEVIHRY----KVNGFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFG--DP 56
Query: 735 DGHDLKSLQVKWLR-TQIGMVGQEPI---------LFATSILENVLMGKENATMKEAVAA 784
+ K +K R +I +E + L G N + +
Sbjct: 57 NSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDER 116
Query: 785 CKAASAHSFISELPLGYDTQVGDRG-TQLSGGQKQRIALARAMIKDPRILLLDEPTSALD 843
K L + T + ++ LSGG QR+ +A +++++ + + D+P+S LD
Sbjct: 117 GKKDEV---KELLNM---TNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLD 170
Query: 844 SESESIVQQAIDKISVGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLER 899
+ +AI ++ + IV+ H L + + I ++ S V + R
Sbjct: 171 VRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGESSVYGRVSKSYAAR 227
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 4e-23
Identities = 49/237 (20%), Positives = 91/237 (38%), Gaps = 42/237 (17%)
Query: 1317 KMVTFTYPSRPEVTVLKDFCLKV-KGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMI 1375
V Y +V K F L K +++ ++G +G GK+TV+ ++ PN G
Sbjct: 3 GEVIHRY----KVNGFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGD--P 56
Query: 1376 EGVDLREINVKWLR-KQTALVGQEPA------------------LFAGTIRDNIALGNPK 1416
++ +K R K+ +E GT+ + +
Sbjct: 57 NSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEIL---TKI 113
Query: 1417 ASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLL 1476
+ +E E + + LSGG QR+ +A ++L+ + V +
Sbjct: 114 DERGKKDEVKELLNMTNLWNKDAN-----------ILSGGGLQRLLVAASLLREADVYIF 162
Query: 1477 DEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYG 1532
D+ SS LD+ ++ A+R++ K IVV H L + ++I ++ YG
Sbjct: 163 DQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGE-SSVYG 218
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 2e-26
Identities = 62/238 (26%), Positives = 110/238 (46%), Gaps = 33/238 (13%)
Query: 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGK 1372
I +K V+ + +V L + + ++ G ++G SG+GK+T + +I P+ G+
Sbjct: 3 RIIVKNVSKVFKK-GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
Query: 1373 VMIEGVDLREINVKWL---RKQTALVGQEPALFAG-TIRDNIALG--NPKASWAEIE--- 1423
+ + + + ++ +V Q AL+ T +NIA N K S EI
Sbjct: 62 LYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRV 121
Query: 1424 -EAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSA 1482
E A+ IH ++ P+ +LSG Q+QR+A+ARA++K +LLLDE S
Sbjct: 122 EEVAKILDIHHVLNHFPR-----------ELSGAQQQRVALARALVKDPSLLLLDEPFSN 170
Query: 1483 LDLESEKHVQDALRKVSKR--ATTIVVAHRLSTIREANM-----IAVVRDGAVVEYGS 1533
LD + +++V R T +VV+H + + + V+ G +V+ G
Sbjct: 171 LDARMRDSARALVKEVQSRLGVTLLVVSHDPA---DI-FAIADRVGVLVKGKLVQVGK 224
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 96.6 bits (241), Expect = 3e-21
Identities = 65/235 (27%), Positives = 115/235 (48%), Gaps = 29/235 (12%)
Query: 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGL 731
+I K V+ + + V L ++N+ I + + ++G SG GK+T +I P+ G
Sbjct: 3 RIIVKNVSKVFKK-GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
Query: 732 ITLDGHDLKSLQVKWLRTQ---IGMVGQEPILFAT-SILENV-----LMGKENATMKEAV 782
+ D + S + + IGMV Q L+ + EN+ M +++ V
Sbjct: 62 LYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRV 121
Query: 783 AACKAASAHSFISELPLGYDTQVGDRG-TQLSGGQKQRIALARAMIKDPRILLLDEPTSA 841
+ A I ++ V + +LSG Q+QR+ALARA++KDP +LLLDEP S
Sbjct: 122 E--EVAK----ILDI-----HHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSN 170
Query: 842 LDSESESIVQQAIDKI--SVGRTTIVIAHRLA---TVKNANTIVVLDQGSVVEIG 891
LD+ + + ++ +G T +V++H A + A+ + VL +G +V++G
Sbjct: 171 LDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAI--ADRVGVLVKGKLVQVG 223
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 3e-24
Identities = 42/227 (18%), Positives = 93/227 (40%), Gaps = 37/227 (16%)
Query: 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGL 731
K+E + ++ Y + +L + + I + G +G GK+T+ I + P KG
Sbjct: 10 KLEIRDLSVGY----DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGE 65
Query: 732 ITLDGHDLKSLQVKWLRTQIGMVGQEPILFAT-SILENVL-------MGKENATMKEAVA 783
I +G + + + +I + +E I+ S+ + + + + +A+
Sbjct: 66 IIYNGVPITKV-----KGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALE 120
Query: 784 ACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALD 843
+ + + EL S G +R+ LA ++ + I +LD+P A+D
Sbjct: 121 SVEVLDLKKKLGEL---------------SQGTIRRVQLASTLLVNAEIYVLDDPVVAID 165
Query: 844 SESESIVQQAIDKISVGRTTIVIA--HRLATVKNANTIVVLDQGSVV 888
+S+ V ++I +I + ++I+ L+ + L + S
Sbjct: 166 EDSKHKVLKSILEILKEKGIVIISSREELSYC---DVNENLHKYSTK 209
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 99.9 bits (250), Expect = 1e-23
Identities = 40/222 (18%), Positives = 102/222 (45%), Gaps = 29/222 (13%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
+E++ ++ Y + VL+ + ++ G++V G +G GK+T++ I + P +G++
Sbjct: 11 LEIRDLSVGY----DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 66
Query: 1374 MIEGVDLREINVKWLRKQTALVGQEPALFAG-TIRDNI----ALGNPKASWAEIEEAAEE 1428
+ GV + ++ + + + +E + ++ D + +L K + EI +A E
Sbjct: 67 IYNGVPITKV-----KGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALES 121
Query: 1429 AYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESE 1488
+ + ++GE LS G +R+ +A +L + + +LD+ A+D +S+
Sbjct: 122 VEV--------LDLKKKLGE----LSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSK 169
Query: 1489 KHVQDALRKVSK-RATTIVVAHRLSTIREANMIAVVRDGAVV 1529
V ++ ++ K + I+ + + ++ + +
Sbjct: 170 HKVLKSILEILKEKGIVIISSREE--LSYCDVNENLHKYSTK 209
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 101 bits (255), Expect = 7e-24
Identities = 54/234 (23%), Positives = 107/234 (45%), Gaps = 14/234 (5%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
+ K + + IL+ ++ I + L+G +G GK+T +I P+ G++
Sbjct: 16 VVVKDLRKRIG---KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIV 72
Query: 733 TLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHS 792
T+ G ++ + +R I + +E + + G E A ++
Sbjct: 73 TVFGKNVVE-EPHEVRKLISYLPEEAGAYRN------MQGIEYLRFVAGFYASSSSEIEE 125
Query: 793 FISEL--PLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIV 850
+ G ++ DR + S G +++ +ARA++ +PR+ +LDEPTS LD + V
Sbjct: 126 MVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREV 185
Query: 851 QQAIDKISVGRTTIVI-AHRLATV-KNANTIVVLDQGSVVEIGNHRQLLERGGA 902
++ + + S TI++ +H + V + I ++ G++VE G +L ER A
Sbjct: 186 RKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKA 239
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 1e-23
Identities = 54/241 (22%), Positives = 110/241 (45%), Gaps = 32/241 (13%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
+ +K + + +LK +++ G + L+G +G+GK+T + +I P+ G V
Sbjct: 16 VVVKDLRKRIG---KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIV 72
Query: 1374 MIEGVDLREINVKWLRKQTALVGQEPALFAG-TIRDNIAL-----GNPKASWAE-IEEAA 1426
+ G ++ E +RK + + +E + + + + + E +E A
Sbjct: 73 TVFGKNVVE-EPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERAT 131
Query: 1427 EEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLE 1486
E A + + I Y S G +++ IARA++ R+ +LDE +S LD+
Sbjct: 132 EIAGLGEKIKDRVSTY-----------SKGMVRKLLIARALMVNPRLAILDEPTSGLDVL 180
Query: 1487 SEKHVQDALRKVSKRATTIVVAHRLST--IREANM----IAVVRDGAVVEYGSHETLLAS 1540
+ + V+ L++ S+ TI+ +S+ + E IA++ +G +VE G+ E L
Sbjct: 181 NAREVRKILKQASQEGLTIL----VSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER 236
Query: 1541 H 1541
+
Sbjct: 237 Y 237
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 98.7 bits (247), Expect = 8e-23
Identities = 48/216 (22%), Positives = 95/216 (43%), Gaps = 26/216 (12%)
Query: 691 LRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQ 750
L +++ + ++G +G GKST+ +I F +G + + D+ + +
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEP-AELYH 81
Query: 751 IGMVG--QEPILFAT-SILENVLMGKENAT-------------MKEAVAACKAASAHSFI 794
G+V Q P ++LEN+L+G+ KE KA F
Sbjct: 82 YGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEF- 140
Query: 795 SELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSAL-DSESESIVQQA 853
L + +LSGGQ + + + RA++ +P+++++DEP + + + I
Sbjct: 141 ----LKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIF-NH 195
Query: 854 IDKI-SVGRTTIVIAHRLATVKN-ANTIVVLDQGSV 887
+ ++ + G T ++I HRL V N + + V+ G +
Sbjct: 196 VLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQI 231
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 70.6 bits (174), Expect = 3e-13
Identities = 41/198 (20%), Positives = 82/198 (41%), Gaps = 28/198 (14%)
Query: 1329 VTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWL 1388
L + V G + ++G +GSGKST+I +I F ++G+V E D+
Sbjct: 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDI----TNKE 75
Query: 1389 RKQTALVG-----QEPALFAG-TIRDNIALGN------------PKASWAEIEEAAEEAY 1430
+ G Q P T+ +N+ +G K + EE E+A+
Sbjct: 76 PAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAF 135
Query: 1431 -IHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEK 1489
I +F+ +LSGGQ + + I RA++ +++++DE + +
Sbjct: 136 KILEFL-----KLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAH 190
Query: 1490 HVQDALRKVSKRATTIVV 1507
+ + + ++ + T ++
Sbjct: 191 DIFNHVLELKAKGITFLI 208
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 97.7 bits (244), Expect = 1e-21
Identities = 82/244 (33%), Positives = 122/244 (50%), Gaps = 52/244 (21%)
Query: 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGK 1372
I+L+ + + + T L + LK+K G +AL+G SGSGKST+++ I Y P GK
Sbjct: 3 EIKLENIVKKFGN---FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGK 59
Query: 1373 VMIEGVDL-------REINVKWLRKQTALVGQEPALFAG-TIRDNIALG--NPKASWAEI 1422
+ + D+ R + LV Q AL+ T+ NIA KA EI
Sbjct: 60 IYFDEKDVTELPPKDRNV---------GLVFQNWALYPHMTVYKNIAFPLELRKAPREEI 110
Query: 1423 E----EAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDE 1478
+ E A+ +I K ++ P QLSGGQ+QR+AIARA++K VLLLDE
Sbjct: 111 DKKVREVAKMLHIDKLLNRYPW-----------QLSGGQQQRVAIARALVKEPEVLLLDE 159
Query: 1479 ASSALD--LESEKHVQDALRKVSKR--ATTIVVAHRLSTIREANM-----IAVVRDGAVV 1529
S LD L E + L+++ K TT+ V H + EA + IAV+R+G ++
Sbjct: 160 PLSNLDALLRLEVRAE--LKRLQKELGITTVYVTHDQA---EA-LAMADRIAVIREGEIL 213
Query: 1530 EYGS 1533
+ G+
Sbjct: 214 QVGT 217
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 82.3 bits (204), Expect = 1e-16
Identities = 68/240 (28%), Positives = 114/240 (47%), Gaps = 46/240 (19%)
Query: 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGL 731
+I+ + + + + L ++NL I + +AL+G SG GKST+ I Y PT G
Sbjct: 3 EIKLENIVKKFGN---FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGK 59
Query: 732 ITLDGHDLKSLQVKWLRTQIGMVGQEPILFAT-SILENV-----LMGKENATMKEAVAAC 785
I D D+ L K R +G+V Q L+ ++ +N+ L + + V
Sbjct: 60 IYFDEKDVTELPPK-DR-NVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVR-- 115
Query: 786 KAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALD-- 843
+ A L D + QLSGGQ+QR+A+ARA++K+P +LLLDEP S LD
Sbjct: 116 EVAKM--------LHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDAL 167
Query: 844 ------SESESIVQQAIDKISVGRTTIVIAH------RLATVKNANTIVVLDQGSVVEIG 891
+E + + ++ +G TT+ + H +A I V+ +G ++++G
Sbjct: 168 LRLEVRAELKRLQKE------LGITTVYVTHDQAEALAMAD-----RIAVIREGEILQVG 216
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 88.8 bits (221), Expect = 9e-19
Identities = 69/242 (28%), Positives = 110/242 (45%), Gaps = 48/242 (19%)
Query: 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGK 1372
I + + + V + +VK G VAL+G SG GK+T + ++ Y P G+
Sbjct: 3 SIRVVNLKKYFGK---VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGE 59
Query: 1373 VMIEGVDL-------REINVKWLRKQTALVGQEPALFAG-TIRDNIALG--NPKASWAEI 1422
+ + V + RE+ +V Q AL+ T+ +NIA + S E+
Sbjct: 60 IYFDDVLVNDIPPKYREV---------GMVFQNYALYPHMTVFENIAFPLRARRISKDEV 110
Query: 1423 E----EAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDE 1478
E E A + I + P QLSGGQ+QR+A+ARA++K +VLL DE
Sbjct: 111 EKRVVEIARKLLIDNLLDRKPT-----------QLSGGQQQRVALARALVKQPKVLLFDE 159
Query: 1479 ASSALDLESEKHVQDALRKVSKR--ATTIVVAHRLSTIREANM-----IAVVRDGAVVEY 1531
S LD ++ ++ + + T++ V H + EA M IAV G +V+Y
Sbjct: 160 PLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQA---EA-MTMASRIAVFNQGKLVQY 215
Query: 1532 GS 1533
G+
Sbjct: 216 GT 217
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 75.3 bits (186), Expect = 3e-14
Identities = 63/240 (26%), Positives = 108/240 (45%), Gaps = 46/240 (19%)
Query: 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGL 731
I + + + ++ + + +AL+G SG GK+T ++ Y PT G
Sbjct: 3 SIRVVNLKKYFGK---VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGE 59
Query: 732 ITLDGHDLKSLQVKWLRTQIGMVGQEPILFAT-SILENV-----LMGKENATMKEAVAAC 785
I D + + K ++GMV Q L+ ++ EN+ +++ V
Sbjct: 60 IYFDDVLVNDIPPK--YREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVV-- 115
Query: 786 KAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALD-- 843
+ A L D + + TQLSGGQ+QR+ALARA++K P++LL DEP S LD
Sbjct: 116 EIARK--------LLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDAN 167
Query: 844 ------SESESIVQQAIDKISVGRTTIVIAH------RLATVKNANTIVVLDQGSVVEIG 891
+E + + Q+ +G T++ + H +A+ I V +QG +V+ G
Sbjct: 168 LRMIMRAEIKHLQQE------LGITSVYVTHDQAEAMTMAS-----RIAVFNQGKLVQYG 216
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 88.4 bits (220), Expect = 2e-18
Identities = 74/254 (29%), Positives = 119/254 (46%), Gaps = 52/254 (20%)
Query: 1303 GRKLERSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLI 1362
G +E K + ++L+ +T + + T + L +K G + L+G SG GK+T + +I
Sbjct: 1 GNNIEVIKMVEVKLENLTKRFGN---FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMI 57
Query: 1363 QRFYDPNQGKVMIEGVDL-------REINVKWLRKQTALVGQEPALFAG-TIRDNIALG- 1413
+P +G++ D+ R I ++V Q A++ T+ +NIA
Sbjct: 58 AGLEEPTEGRIYFGDRDVTYLPPKDRNI---------SMVFQSYAVWPHMTVYENIAFPL 108
Query: 1414 -NPKASWAEIE----EAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAIL 1468
K EI+ AAE I + ++ P QLSGGQ+QR+A+ARAI+
Sbjct: 109 KIKKFPKDEIDKRVRWAAELLQIEELLNRYPA-----------QLSGGQRQRVAVARAIV 157
Query: 1469 KGSRVLLLDEASSALD--LESEKHVQDALRKVSKR--ATTIVVAHRLSTIREANM----- 1519
VLL+DE S LD L + ++K+ ++ TTI V H EA M
Sbjct: 158 VEPDVLLMDEPLSNLDAKLRVAMRAE--IKKLQQKLKVTTIYVTHDQV---EA-MTMGDR 211
Query: 1520 IAVVRDGAVVEYGS 1533
IAV+ G +++ GS
Sbjct: 212 IAVMNRGQLLQIGS 225
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 75.0 bits (185), Expect = 4e-14
Identities = 53/179 (29%), Positives = 90/179 (50%), Gaps = 23/179 (12%)
Query: 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGL 731
+++ + +T + + + LNL I + L L+G SG GK+T +I +PT+G
Sbjct: 11 EVKLENLTKRFGN---FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGR 67
Query: 732 ITLDGHDLKSLQVKWLRTQIGMVGQEPILFAT-SILENV-----LMGKENATMKEAVAAC 785
I D+ L K R I MV Q ++ ++ EN+ + + + V
Sbjct: 68 IYFGDRDVTYLPPK-DR-NISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVR-- 123
Query: 786 KAASAHSFISELPLGYDTQVGDRG-TQLSGGQKQRIALARAMIKDPRILLLDEPTSALD 843
AA + ++ ++ +R QLSGGQ+QR+A+ARA++ +P +LL+DEP S LD
Sbjct: 124 WAAE----LLQI-----EELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLD 173
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 86.5 bits (215), Expect = 8e-18
Identities = 73/247 (29%), Positives = 110/247 (44%), Gaps = 62/247 (25%)
Query: 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGK 1372
G+ L V + VT +++ L+VK G + L+G SG GK+T + +I +P++G+
Sbjct: 3 GVRLVDVWKVFGE---VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQ 59
Query: 1373 VMIEGVDLREINVKWLRKQT-------ALVGQEPALFAG-TIRDNIALG--NPKASWAEI 1422
+ I + + A+V Q AL+ T+ DNIA K EI
Sbjct: 60 IYIGD---KLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEI 116
Query: 1423 E----EAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDE 1478
+ E AE + + ++ P+ +LSGGQ+QR+A+ RAI++ +V L+DE
Sbjct: 117 DQRVREVAELLGLTELLNRKPR-----------ELSGGQRQRVALGRAIVRKPQVFLMDE 165
Query: 1479 ASSALDLESEKHVQDA-LRKVSKRA-----------TTIVVAHRLSTIREANM-----IA 1521
S L DA LR V RA TTI V H EA M IA
Sbjct: 166 PLSNL---------DAKLR-VRMRAELKKLQRQLGVTTIYVTHDQV---EA-MTMGDRIA 211
Query: 1522 VVRDGAV 1528
V+ G +
Sbjct: 212 VMNRGVL 218
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 72.3 bits (178), Expect = 3e-13
Identities = 46/184 (25%), Positives = 84/184 (45%), Gaps = 27/184 (14%)
Query: 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGL 731
+ V + +R ++L + + + L+G SG GK+T +I +P++G
Sbjct: 3 GVRLVDVWKVFGE---VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQ 59
Query: 732 ITLDGHDLKSLQVKWL-----RTQIGMVGQEPILFAT-SILENV-----LMGKENATMKE 780
I + + + R I MV Q L+ ++ +N+ L + +
Sbjct: 60 IYIGDKLVADPEKGIFVPPKDR-DIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQ 118
Query: 781 AVAACKAASAHSFISELPLGYDTQVGDRG-TQLSGGQKQRIALARAMIKDPRILLLDEPT 839
V + A + L T++ +R +LSGGQ+QR+AL RA+++ P++ L+DEP
Sbjct: 119 RVR--EVAE----LLGL-----TELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPL 167
Query: 840 SALD 843
S LD
Sbjct: 168 SNLD 171
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 83.3 bits (207), Expect = 9e-18
Identities = 58/225 (25%), Positives = 111/225 (49%), Gaps = 33/225 (14%)
Query: 690 ILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRT 749
++ ++L +P + + L+G +G GK+T + I KG I +G D+ + +
Sbjct: 21 AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPA-HVIN 79
Query: 750 QIGMV----GQEPILFAT-SILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDT- 803
++G+ G+ +F ++ EN++MG N KE + +L +
Sbjct: 80 RMGIALVPEGRR--IFPELTVYENLMMGAYNRKDKEGIKR-----------DLEWIFSLF 126
Query: 804 -QVGDRGTQ----LSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQ---AID 855
++ +R Q LSGG++Q +A+ RA++ P++L++DEP+ L + +V + I
Sbjct: 127 PRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGL---APILVSEVFEVIQ 183
Query: 856 KISVGRTTIVIAHRLATV--KNANTIVVLDQGSVVEIGNHRQLLE 898
KI+ TTI++ + A K A+ VL+ G +V G +LL+
Sbjct: 184 KINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 79.0 bits (196), Expect = 3e-16
Identities = 59/227 (25%), Positives = 104/227 (45%), Gaps = 31/227 (13%)
Query: 1329 VTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWL 1388
+ +K LKV G +V L+G +G+GK+T + I +GK++ G D+ +
Sbjct: 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVI 78
Query: 1389 -RKQTALVGQEPALFAG-TIRDNIALG-NPKASWAEIEEAAEEAYIHKFISSLPQGYETQ 1445
R ALV + +F T+ +N+ +G + I+ E + F P+ E
Sbjct: 79 NRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIF-SLF----PRLKERL 133
Query: 1446 VGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQ---DALRKVSKRA 1502
G LSGG++Q +AI RA++ ++L++DE S L + V + ++K+++
Sbjct: 134 KQLGG-TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGL---APILVSEVFEVIQKINQEG 189
Query: 1503 TTIVVAHRLSTIRE--ANM---IA----VVRDGAVVEYGSHETLLAS 1540
TTI++ E A +A V+ G +V G LL +
Sbjct: 190 TTILLV-------EQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 86.2 bits (213), Expect = 5e-17
Identities = 65/318 (20%), Positives = 118/318 (37%), Gaps = 50/318 (15%)
Query: 632 YFAQFAQGTVAATRVFEIIDRVPEIDPYNSEGRKLSSVSGKIEFKGVTFAYPSRPETVIL 691
Y F A + E R + P + + AY ++ +L
Sbjct: 395 YMTIFLHEKKAKDILDEFRKRAVDNIPVGPNFDDEEDEGEDLCNCEFSLAYGAKI---LL 451
Query: 692 RSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQI 751
L + ++ + G +G GKST+ I G T + +
Sbjct: 452 NKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVD--GFPTQEE------------CRT 497
Query: 752 GMVGQEPILFAT--SILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRG 809
V + + S+L+ V KEA+ F E+ +
Sbjct: 498 VYVEHDIDGTHSDTSVLDFVFESGVGT--KEAIK--DKLIEFGFTDEM---IAMPISA-- 548
Query: 810 TQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHR 869
LSGG K ++ALARA++++ ILLLDEPT+ LD+ + + + + + G T+I I+H
Sbjct: 549 --LSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYL--NTCGITSITISHD 604
Query: 870 ---LATVKNANTIVVLDQGSVVEIGNHRQLLERGGAYHDLVKLASEAVSQPQSKQKDAKR 926
L V I+ + +L + G + + VK A ++ ++ +
Sbjct: 605 SVFLDNV--CEYIINYEGL---------KLRKYKGNFTEFVKKCPAA----KAYEELSNT 649
Query: 927 GIEFSIYEKSVIEVSRSR 944
+EF E +E +++
Sbjct: 650 DLEFKFPEPGYLEGVKTK 667
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 75.5 bits (185), Expect = 1e-13
Identities = 43/271 (15%), Positives = 86/271 (31%), Gaps = 31/271 (11%)
Query: 624 RGLALSLSYFAQFAQGTVAATRVFEIIDRVPEIDPYNSEGRKLSSVSGKIEFKGVTFAYP 683
++Y Q A + + + + + + + +I
Sbjct: 732 THENCRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINEND------ 785
Query: 684 SRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQ 743
++ + + G + + R +++
Sbjct: 786 -----------------AEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIG 828
Query: 744 VKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAAC-----KAASAHSFISELP 798
+K R M + ++E+ MKEA+A+ S L
Sbjct: 829 MKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLG 888
Query: 799 LGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKIS 858
L + R LSGGQK ++ LA + P +++LDEPT+ LD +S + +A+ +
Sbjct: 889 LDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFE 948
Query: 859 VGRTTIVIAHRLATVKN-ANTIVVLDQGSVV 888
I+I H KN + + G +
Sbjct: 949 --GGVIIITHSAEFTKNLTEEVWAVKDGRMT 977
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 66.2 bits (161), Expect = 6e-11
Identities = 39/198 (19%), Positives = 77/198 (38%), Gaps = 32/198 (16%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
+ + Y ++ +L L++K + G +G GKST++ I
Sbjct: 436 LCNCEFSLAYGAKI---LLNKTQLRLKRARRYGICGPNGCGKSTLMRAI--------ANG 484
Query: 1374 MIEGVDLREINVKWLRKQTALVGQEPALFAG--TIRDNIALGNPKASWAEIEEAAEEAYI 1431
++G +E +T V + ++ D + I++ E
Sbjct: 485 QVDGFPTQE------ECRTVYVEHDIDGTHSDTSVLDFVFESGVGTK-EAIKDKLIEFGF 537
Query: 1432 HKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHV 1491
+ + LSGG K ++A+ARA+L+ + +LLLDE ++ LD + +
Sbjct: 538 T------DEMIAMPISA----LSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWL 587
Query: 1492 QDALRKVSKRATTIVVAH 1509
+ L T+I ++H
Sbjct: 588 VNYLNT--CGITSITISH 603
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 57.0 bits (137), Expect = 5e-08
Identities = 32/225 (14%), Positives = 77/225 (34%), Gaps = 10/225 (4%)
Query: 1316 LKMVTFTYPSRPEVTVLKDFCLKV--KGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
+ + + + + + + ++ + + + + R N +
Sbjct: 758 SEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEY 817
Query: 1374 MIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIA-----LGNPKASWAEIEEAAEE 1428
+ I +K R + + G + ++ + + +A +
Sbjct: 818 ECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTR 877
Query: 1429 AYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESE 1488
I + S L E LSGGQK ++ +A + +++LDE ++ LD +S
Sbjct: 878 KEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSL 937
Query: 1489 KHVQDALRKVSKRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYG 1532
+ AL++ I++ H + + V+DG + G
Sbjct: 938 GALSKALKEFEG--GVIIITHSAEFTKNLTEEVWAVKDGRMTPSG 980
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 48.1 bits (114), Expect = 2e-05
Identities = 17/68 (25%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 1308 RSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYD 1367
+ K + +++ + F YP + + D + S +A++G +G+GKST+I ++
Sbjct: 667 KQKAI-VKVTNMEFQYPGTSKP-QITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELL 724
Query: 1368 PNQGKVMI 1375
P G+V
Sbjct: 725 PTSGEVYT 732
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 76.8 bits (190), Expect = 1e-14
Identities = 59/221 (26%), Positives = 88/221 (39%), Gaps = 55/221 (24%)
Query: 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGK 1372
++L+ VT + EV V KD L + G V VG SG GKST++ +I G
Sbjct: 3 SVQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGD 59
Query: 1373 VMIEGVDL-------REINVKWLRKQTALVGQEPALFAG-TIRDNIALG--NPKASWAEI 1422
+ I + R + +V Q AL+ ++ +N++ G A I
Sbjct: 60 LFIGEKRMNDTPPAERGV---------GMVFQSYALYPHLSVAENMSFGLKLAGAKKEVI 110
Query: 1423 EEAAEEA----YIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDE 1478
+ + + + P+ LSGGQ+QR+AI R ++ V LLDE
Sbjct: 111 NQRVNQVAEVLQLAHLLDRKPK-----------ALSGGQRQRVAIGRTLVAEPSVFLLDE 159
Query: 1479 ASSALDLESEKHVQDALR--------KVSKR--ATTIVVAH 1509
S LD ALR ++ KR T I V H
Sbjct: 160 PLSNLDA--------ALRVQMRIEISRLHKRLGRTMIYVTH 192
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 64.1 bits (157), Expect = 1e-10
Identities = 69/248 (27%), Positives = 107/248 (43%), Gaps = 64/248 (25%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALI---ERFYDPTK 729
++ + VT A+ E V+ + +NL I + + VG SG GKST+ +I E T
Sbjct: 4 VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE---TITS 57
Query: 730 GLITLDGHDLKSLQVKWLRTQIGMVGQ-----------EPILFATSILENVLMGKENATM 778
G + + + +GMV Q E + F L+ L G + +
Sbjct: 58 GDLFIGEKRMNDTPPA--ERGVGMVFQSYALYPHLSVAENMSFG---LK--LAGAKKEVI 110
Query: 779 KEAVAACKAASAHSFISELPLGYDTQVGDRG-TQLSGGQKQRIALARAMIKDPRILLLDE 837
+ V + A + +L + DR LSGGQ+QR+A+ R ++ +P + LLDE
Sbjct: 111 NQRVN--QVAE----VLQL-----AHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDE 159
Query: 838 PTSALDSE------SESIVQQAIDKI--SVGRTTIVIAH------RLATVKNANTIVVLD 883
P S LD+ E I ++ +GRT I + H LA IVVLD
Sbjct: 160 PLSNLDAALRVQMRIE------ISRLHKRLGRTMIYVTHDQVEAMTLAD-----KIVVLD 208
Query: 884 QGSVVEIG 891
G V ++G
Sbjct: 209 AGRVAQVG 216
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 64.7 bits (157), Expect = 7e-11
Identities = 26/143 (18%), Positives = 50/143 (34%), Gaps = 15/143 (10%)
Query: 763 TSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRG-----TQLSGGQK 817
E L + + + + V G T LSGG++
Sbjct: 195 ALAREAALSKIGELASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGER 254
Query: 818 QRIALA------RAMIKDPRILLLDEPTSALDSESESIVQQAIDKI-SVGRTTIVIAHRL 870
+ LA + + +L+LDEPT LD E + +++ I+++H
Sbjct: 255 IALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE 314
Query: 871 ATVKNANTIVVL---DQGSVVEI 890
A+ ++ + + S VE+
Sbjct: 315 ELKDAADHVIRISLENGSSKVEV 337
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 54.7 bits (131), Expect = 1e-07
Identities = 23/116 (19%), Positives = 44/116 (37%), Gaps = 12/116 (10%)
Query: 1421 EIEEAAEEAYIHKFISSLPQGYETQVGESGV-----QLSGGQKQ------RIAIARAILK 1469
E E Y + + V G LSGG++ R+A++ +
Sbjct: 212 IFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAG 271
Query: 1470 GSRVLLLDEASSALDLESEKHVQDALRKVSKR-ATTIVVAHRLSTIREANMIAVVR 1524
+L+LDE + LD E + + + + K+ I+V+H A+ + +
Sbjct: 272 EISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIRIS 327
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 59.4 bits (144), Expect = 3e-10
Identities = 19/89 (21%), Positives = 39/89 (43%), Gaps = 8/89 (8%)
Query: 799 LGYDTQVGDRGTQLSGGQKQRIALA------RAMIKDPRILLLDEPTSALDSESESIVQQ 852
+ ++ T LSGG++ + LA + + +L+LDEPT LD E +
Sbjct: 46 VVWEG-KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLIT 104
Query: 853 AIDKI-SVGRTTIVIAHRLATVKNANTIV 880
+++ I+++H A+ ++
Sbjct: 105 IMERYLKKIPQVILVSHDEELKDAADHVI 133
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 4e-07
Identities = 18/87 (20%), Positives = 36/87 (41%), Gaps = 8/87 (9%)
Query: 1441 GYETQVGESGVQLSGGQKQRIAIA------RAILKGSRVLLLDEASSALDLESEKHVQDA 1494
+E LSGG++ + +A + +L+LDE + LD E + +
Sbjct: 47 VWEG-KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITI 105
Query: 1495 LRKVSKRA-TTIVVAHRLSTIREANMI 1520
+ + K+ I+V+H A+ +
Sbjct: 106 MERYLKKIPQVILVSHDEELKDAADHV 132
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 60.6 bits (146), Expect = 4e-09
Identities = 83/474 (17%), Positives = 134/474 (28%), Gaps = 133/474 (28%)
Query: 648 EIIDRVPEIDPYNSEGRKLSSVSGKIEFKGVTFAYPSRPETVI-LRSLNLVIPSSKTLAL 706
E Y + +L + + V+ R + + LR L + +K + +
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS-----RLQPYLKLRQALLELRPAKNVLI 155
Query: 707 VGTSGGGKSTVFALIERFYDPTKGL------ITL-----DGHDLKSLQVKWLRTQIGMVG 755
G G GK+ V + Y + + L L+ LQ L QI
Sbjct: 156 DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK--LLYQIDPNW 213
Query: 756 QEPILFATSI----------LENVLMGKENATM---------KEAVAA----CKAASAHS 792
+++I L +L K +A A CK
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI----- 268
Query: 793 FISELPLGYDTQVGDRGTQLSGGQKQRIAL---ARAMIKDP--RILL--LDEPTSALDSE 845
L QV D LS I+L + + D +LL LD L E
Sbjct: 269 ----LLTTRFKQVTD---FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE 321
Query: 846 SESIVQQAIDKISVGRTTIVIAHRLATVKNAN-----TIVVLDQGSV--VEIGNHRQLLE 898
+ + + I + K+ N TI+ + S+ +E +R++
Sbjct: 322 VLTTNPRRLSII--AESIRDGLATWDNWKHVNCDKLTTII---ESSLNVLEPAEYRKM-- 374
Query: 899 RGGAYHDLVKLASEAVSQPQSKQKDAKRGIE---FSIYEKSVIEVSRSRYANE-VSKS-- 952
+ L A I S+ VI+ N+ S
Sbjct: 375 ----FDRLSVF-----------PPSAH--IPTILLSLIWFDVIKSDVMVVVNKLHKYSLV 417
Query: 953 -KYFKSMQAEI--------QTVEEEQQKPR--------PRKFQLSEIWKLQRPEFAMIIF 995
K K I +E E R P+ F L P +
Sbjct: 418 EKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDS---DDLIPPYLDQYFY 474
Query: 996 GFILGMHAGAI-----LSIFPLILGQALQVYFDDTASTLRRDVRYLSLALVGLG 1044
I G H I +++F V+ D L + +R+ S A G
Sbjct: 475 SHI-GHHLKNIEHPERMTLFR-------MVFLDF--RFLEQKIRHDSTAWNASG 518
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.5 bits (130), Expect = 3e-07
Identities = 46/330 (13%), Positives = 87/330 (26%), Gaps = 94/330 (28%)
Query: 1243 LVKQGHASFGVVYKIFLILVLSSFSVGQLA---GLAPDTSMAATAI---------PAVLQ 1290
++ A G ++F L+ + Q L + + I +
Sbjct: 54 IIMSKDAVSGT-LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY 112
Query: 1291 ITKRKPLI-DNVKGRKLERSKPLGIELKMVTFTYPSRPE-VTVLKDFCLKVKGGSMVALV 1348
I +R L DN K S R + L+ L+++ V +
Sbjct: 113 IEQRDRLYNDNQVFAKYNVS----------------RLQPYLKLRQALLELRPAKNVLID 156
Query: 1349 GGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQEPALFAGTIRD 1408
G GSGK+ V + Y + + WL +
Sbjct: 157 GVLGSGKTWVALDVCLSYKV---------QCKMDFKIFWLN-----LKNC-------NSP 195
Query: 1409 NIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAIL 1468
L + +I+ S++ S + R +
Sbjct: 196 ETVLEMLQKLLYQIDPNWTSR--SDHSSNIKLRIH----------SIQAELRRLLKSKPY 243
Query: 1469 KGSRVLLLDEASSALDLESEKHVQDA--LRKVSKRATTIVVAHRLSTIREANMIAVVRDG 1526
+ LL+ L +VQ+A + ++ T R V D
Sbjct: 244 E--NCLLV------LL-----NVQNAKAWNAFNLSCKILL------TTRFKQ----VTDF 280
Query: 1527 AVVEYGSHETLLASHLNGVYASLVRAETEA 1556
+H + L+ +L E ++
Sbjct: 281 LSAATTTHIS-----LDHHSMTLTPDEVKS 305
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.2 bits (111), Expect = 5e-05
Identities = 102/706 (14%), Positives = 202/706 (28%), Gaps = 221/706 (31%)
Query: 421 ERSAQRIRTKYLRAVLRQD-IAFFDTEVSTSDIMHGISSDIAQIQEVMGEKVAHFAHNI- 478
E + + K + +V + FD + D+ I S +I ++ K +
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCK-DVQDMPKSILSK-EEIDHIIMSK-----DAVS 62
Query: 479 ---FTFICGYTVGFLRSWKVSLVVLSVTPLMMFCGMAYKAVYVGLTSKEEASYRRAGSVA 535
F L S + +V F + Y L S + R+ +
Sbjct: 63 GTLRLFWT------LLSKQEEMV-------QKFVEEVLRINYKFLMSPIKTEQRQPSMMT 109
Query: 536 EQAISSIRTVFS--------FV--AEDHFAVRYAGLLADSIPF----GAKLGFAKGAGMG 581
I +++ V + + +R A L G LG K
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG-VLGSGK----- 163
Query: 582 VIYLVTYATWALAFWYGSILVARKELSGGAAIACFFG-----VNVGGRGLALSLSYFAQF 636
TW +A + V + C +N+ ++ Q
Sbjct: 164 --------TW-VA-----LDVCLSY-----KVQCKMDFKIFWLNLKNCNSPETVLEMLQ- 203
Query: 637 AQGTVAATRVFEIIDRVPEIDPYNSEGRKLSSVSGKIEFKGVTFAYPSRPET-VILR--- 692
++ ID +S KL S + E + + ++L
Sbjct: 204 --------KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL-LKSKPYENCLLVLLNVQ 254
Query: 693 ------SLNLVIPSSKTLALVGTS--------GGGKSTVFALIERFYDPTKGLITLDGHD 738
+ NL S K L + T +T +L + L T D +
Sbjct: 255 NAKAWNAFNL---SCKIL--LTTRFKQVTDFLSAATTTHISLDHH----SMTL-TPD--E 302
Query: 739 LKSLQVKWLRTQIG-----MVGQEPI---LFATSILENVLMGK-----ENATMKEAVAAC 785
+KSL +K+L + ++ P + A SI + + + + +
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362
Query: 786 KAASAHSFISEL-PLGYDTQVGDRGTQLSGGQKQRIALARAMI--KDPRILLLDEPTSAL 842
++ L P Y +K L+ + I PT L
Sbjct: 363 --------LNVLEPAEY--------------RKMFDRLS---VFPPSAHI-----PTILL 392
Query: 843 --------DSESESIVQQAIDKISVGR----TTIVI--AHRLATVKNANTIVVLDQGSVV 888
S+ +V + V + +TI I + VK N +
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL------- 445
Query: 889 EIGNHRQLLERGGAYHDLVKLASEAVSQPQSKQ----------KDAKRGIEFSIYEKSVI 938
HR +++ Y+ S+ + P Q K+ + +++
Sbjct: 446 ----HRSIVDH---YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF----- 493
Query: 939 EVSRSRYANEVSKSKYFKSMQAEIQTVEEEQQKPRPRKFQLSEIWKLQR------PEFAM 992
R + + F+ ++ +I+ L ++ + P++
Sbjct: 494 ---RMVFLD-------FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYER 543
Query: 993 I---IFGFILGMHAGAILSIFPLILGQALQ----VYFDDTASTLRR 1031
+ I F+ + I S + +L AL F++ ++R
Sbjct: 544 LVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 2e-04
Identities = 82/656 (12%), Positives = 182/656 (27%), Gaps = 164/656 (25%)
Query: 217 HNPHKHDDPRWFSVSRAYMDDDDVFSHF-HNHHGSSDGKH----------NNNVHELSQN 265
H+ H H D F D+ S F + D K + + +
Sbjct: 1 HHHHHHMD---FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMS 57
Query: 266 GHDHGGHHRMSY----KMDNLDDEFLHGHRGHD-AWLSTSHHYGGGD----------GRN 310
G R+ + K + + +F+ + +L + R+
Sbjct: 58 KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD 117
Query: 311 ---NDPELVSPYNEDDAEVAKPVGLFSLFKYSTKLD---MILV--LLGC------IGALI 356
ND ++ + YN V++ L + +L +L+ +LG + +
Sbjct: 118 RLYNDNQVFAKYN-----VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL 172
Query: 357 NGGALPWYSYFFGNFVNKIANESSDPDKTQMMKDAEKICLLMTVLAAIVMMGAYLEITC- 415
+ F F + N +S +M+ +K+ + + + +
Sbjct: 173 SYKVQC--KMDFKIFWLNLKNCNSPETVLEML---QKLLYQID-----PNWTSRSDHSSN 222
Query: 416 WRLVGERSAQRIRT-----KYLRA--VLR-----QDIAFFD----TEVSTSDIMHGISSD 459
+L +R Y VL + F+ ++T
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRF------KQ 276
Query: 460 IAQIQEVMGEKVAHFA--HNIFTFICGYTVGFLRSW------KVSLVVLSVTPLMMFCGM 511
+ + H + H+ T L + + VL+ P +
Sbjct: 277 VTDF--LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR--LSI 332
Query: 512 AYKAVYVGLTSKEEAS----YRRAGSVAEQAISSIRTVFSFVAEDHFAVRYAGLLADSIP 567
+ + ++ + ++ ++ + I + + + + + L S+
Sbjct: 333 ------IAESIRDGLATWDNWKHVNC--DKLTTIIESSLNVLEPAEYRKMFDRL---SV- 380
Query: 568 FGAKLGFAKGAGMGVIYLVTYATWALAFWYGSI---------------LVARKELSGGAA 612
F A + +L W+ I LV ++ +
Sbjct: 381 ------FPPSA------HIPTILLSL-IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS 427
Query: 613 IACFFGVNVGGRGLALSLSYFAQFAQGTVAATRVFEIIDRVPEIDPYNSEGRKLSSVSGK 672
I ++ L + I+D ++S+ +
Sbjct: 428 I------------PSIYLELKVKLENEYALHRS---IVDHYNIPKTFDSDDLIPPYLDQY 472
Query: 673 I-EFKGVTFAYPSRPETVILRS---LNLVIPSSKTLALVGTSGGGKSTVFALIE--RFYD 726
G PE + L L+ K + T+ ++ ++ +FY
Sbjct: 473 FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK-IRHDSTAWNASGSILNTLQQLKFY- 530
Query: 727 PTKGLITLDGHDLKSLQVKWLRTQIGMVGQEPILFA-TSILENVLMGKENATMKEA 781
K I D V + + + + I T +L LM ++ A +EA
Sbjct: 531 --KPYIC-DNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEA 583
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 55.6 bits (135), Expect = 2e-08
Identities = 65/251 (25%), Positives = 103/251 (41%), Gaps = 40/251 (15%)
Query: 687 ETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALI---ERFYDPTKGLITLDGHDLKSLQ 743
IL+ +NLV+P + AL+G +G GKST+ ++ Y +G I LDG ++ L
Sbjct: 15 GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPE-YTVERGEILLDGENILELS 73
Query: 744 VKWLRTQIG--MVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISEL---- 797
R + G + Q P+ + N L A + V F +++
Sbjct: 74 P-DERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREV------GVAEFWTKVKKAL 126
Query: 798 -PLGYDTQVGDRGTQ--LSGGQKQR--IALARAMIKDPRILLLDEPTSALDSESESIVQQ 852
L +D R SGG+K+R I L +++ P +LDE S LD ++ +V +
Sbjct: 127 ELLDWDESYLSRYLNEGFSGGEKKRNEI-LQLLVLE-PTYAVLDETDSGLDIDALKVVAR 184
Query: 853 AIDKI-SVGRTTIVIAH--RLATVKNANTIV-----VLDQGSVVEIGNHR--QLLERGGA 902
++ + +VI H R+ N I V+ G VV G LE G
Sbjct: 185 GVNAMRGPNFGALVITHYQRI-----LNYIQPDKVHVMMDGRVVATGGPELALELEAKG- 238
Query: 903 YHDLVKLASEA 913
Y L + E
Sbjct: 239 YEWLKEKVKEG 249
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 7e-04
Identities = 65/261 (24%), Positives = 114/261 (43%), Gaps = 61/261 (23%)
Query: 1331 VLKDFCLKVKGGSMVALVGGSGSGKSTVIWLI--QRFYDPNQGKVMIEGVDLREINVKWL 1388
+LK L V G + AL+G +G+GKST+ ++ Y +G+++++G ++ E++
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSP--- 74
Query: 1389 RKQTALVG-----QEPALFAGT-----IRDNI-ALGNPKASWAE----IEEAAEEAYI-H 1432
+ A G Q P G +R + A + AE +++A E
Sbjct: 75 -DERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDE 133
Query: 1433 KFIS-SLPQGYETQVGESGVQLSGGQKQRIAIAR-AILKGSRVLLLDEASSALDLESEKH 1490
++S L +G+ SGG+K+R I + +L+ +LDE S LD+
Sbjct: 134 SYLSRYLNEGF-----------SGGEKKRNEILQLLVLE-PTYAVLDETDSGLDI----- 176
Query: 1491 VQDALRKVSK---------RATTIVVAH--RLSTIREANMIAVVRDGAVVEYGSHETLLA 1539
DAL+ V++ +V+ H R+ + + + V+ DG VV G E LA
Sbjct: 177 --DALKVVARGVNAMRGPNFG-ALVITHYQRILNYIQPDKVHVMMDGRVVATGGPE--LA 231
Query: 1540 SHL--NGVYASLVRAETEANA 1558
L G Y L + + + A
Sbjct: 232 LELEAKG-YEWL-KEKVKEGA 250
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371 | Back alignment and structure |
|---|
Score = 56.8 bits (137), Expect = 3e-08
Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 10/90 (11%)
Query: 811 QLSGGQKQRIALA-------RAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTT 863
LSGG++ +AL+ + ++LDEPT LD + + + K+
Sbjct: 280 NLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQM 339
Query: 864 IVIAHRLATVKNANTIVVLDQ---GSVVEI 890
I+I H A+ I+ + + S V+I
Sbjct: 340 IIITHHRELEDVADVIINVKKDGNVSKVKI 369
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 4e-05
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 1452 QLSGGQKQRIAIA-----RAILKGSRV--LLLDEASSALDLESEKHVQDALRKVSKRATT 1504
LSGG++ +A++ L G+RV ++LDE + LD + + RKV
Sbjct: 280 NLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQM 339
Query: 1505 IVVAHRLSTIREANMIAVVR 1524
I++ H A++I V+
Sbjct: 340 IIITHHRELEDVADVIINVK 359
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 52.5 bits (127), Expect = 3e-07
Identities = 57/233 (24%), Positives = 100/233 (42%), Gaps = 43/233 (18%)
Query: 687 ETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALI---ERFYDPTKGLITLDGHDLKSLQ 743
+ ILR L+L + + A++G +G GKST+ A + E Y+ T G + G DL +L
Sbjct: 32 DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGRED-YEVTGGTVEFKGKDLLALS 90
Query: 744 VKWLRTQIG--MVGQEPILFATSILENVLMGKENAT-MKEAVAACKAA------SAHSFI 794
R G M Q P+ + G N ++ A+ A ++ F
Sbjct: 91 P-EDRAGEGIFMAFQYPV---------EIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQ 140
Query: 795 SEL-----PLGYDTQVGDRG--TQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESE 847
+ L + R SGG+K+R + + + +P + +LDE S LD ++
Sbjct: 141 DLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDAL 200
Query: 848 SIVQQAIDKI-SVGRTTIVIAH--RLATVKNANTIV-----VLDQGSVVEIGN 892
+V ++ + R+ I++ H R+ + I VL QG +V+ G+
Sbjct: 201 KVVADGVNSLRDGKRSFIIVTHYQRI-----LDYIKPDYVHVLYQGRIVKSGD 248
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* Length = 365 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 2e-04
Identities = 14/64 (21%), Positives = 32/64 (50%), Gaps = 7/64 (10%)
Query: 812 LSGGQKQRIALARA-----MIKDPR-ILLLDEPTSALDSESESIVQQAIDKI-SVGRTTI 864
LSGG++ I+++ A + +DE S+LD+E++ + + ++ + + +
Sbjct: 280 LSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIV 339
Query: 865 VIAH 868
I H
Sbjct: 340 FITH 343
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} Length = 916 | Back alignment and structure |
|---|
Score = 44.8 bits (107), Expect = 3e-04
Identities = 35/91 (38%), Positives = 49/91 (53%), Gaps = 15/91 (16%)
Query: 799 LGYDTQVGDRGTQLSGGQKQRIALARAMIKDPR-----ILLLDEPTSALDSESE----SI 849
LGY ++G T LSGG+ QRI LA + K R + +LDEPT L E +
Sbjct: 794 LGY-VKLGQPATTLSGGEAQRIKLASELRK--RDTGRTLYILDEPTVGLHFEDVRKLVEV 850
Query: 850 VQQAIDKISVGRTTIVIAHRLATVKNANTIV 880
+ + +D+ G T IVI H L +KNA+ I+
Sbjct: 851 LHRLVDR---GNTVIVIEHNLDVIKNADHII 878
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* Length = 842 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 7e-04
Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 11/89 (12%)
Query: 799 LGYDTQVGDRGTQLSGGQKQRIALARAMIKDPR---ILLLDEPTSAL---DSES-ESIVQ 851
LGY ++G T+LSGG+ QRI LA + + R + +LDEPT+ L D E + +
Sbjct: 719 LGY-LRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLV 777
Query: 852 QAIDKISVGRTTIVIAHRLATVKNANTIV 880
+ +D G T I + H++ V ++ ++
Sbjct: 778 KLVDA---GNTVIAVEHKMQVVAASDWVL 803
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} Length = 670 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 8e-04
Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 15/91 (16%)
Query: 799 LGYDTQVGDRGTQLSGGQKQRIALARAMIKDPR-----ILLLDEPTSALDSESES----I 849
LGY ++G T LSGG+ QR+ LA + + R + +LDEPT+ L + + +
Sbjct: 532 LGY-MKLGQPATTLSGGEAQRVKLAAELHR--RSNGRTLYILDEPTTGLHVDDIARLLDV 588
Query: 850 VQQAIDKISVGRTTIVIAHRLATVKNANTIV 880
+ + +D G T +VI H L +K A+ I+
Sbjct: 589 LHRLVDN---GDTVLVIEHNLDVIKTADYII 616
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1560 | ||||
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 2e-94 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 3e-91 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 2e-89 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 6e-86 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 4e-87 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 3e-83 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 3e-82 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 6e-81 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 2e-79 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 3e-77 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 8e-71 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 5e-66 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 7e-50 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 2e-48 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 4e-43 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 6e-40 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 5e-43 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 3e-40 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 7e-41 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 3e-40 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 5e-40 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 2e-38 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 1e-35 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 1e-33 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 5e-35 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 2e-34 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 1e-34 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 4e-32 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 2e-34 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 1e-31 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 2e-34 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 4e-33 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 3e-34 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 4e-32 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 3e-31 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 7e-29 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 3e-29 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 2e-28 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 4e-29 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 6e-28 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 7e-22 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 4e-21 | |
| d2hyda2 | 323 | f.37.1.1 (A:1-323) Putative multidrug export ATP-b | 2e-16 | |
| d2hyda2 | 323 | f.37.1.1 (A:1-323) Putative multidrug export ATP-b | 1e-11 | |
| d3b60a2 | 319 | f.37.1.1 (A:10-328) Multidrug resistance ABC trans | 6e-16 | |
| d3b60a2 | 319 | f.37.1.1 (A:10-328) Multidrug resistance ABC trans | 9e-09 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 7e-12 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 2e-08 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 4e-11 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 1e-07 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 3e-07 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 2e-05 | |
| d1w1wa_ | 427 | c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac | 8e-04 |
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 303 bits (777), Expect = 2e-94
Identities = 123/248 (49%), Positives = 174/248 (70%), Gaps = 1/248 (0%)
Query: 664 RKLSSVSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIER 723
+ + G+I+ V+F Y E IL+ +NL I +T+A VG SGGGKST+ LI R
Sbjct: 8 QPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPR 66
Query: 724 FYDPTKGLITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVA 783
FYD T G I +DGH++K LR QIG+V Q+ ILF+ ++ EN+L+G+ AT +E V
Sbjct: 67 FYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVE 126
Query: 784 ACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALD 843
A K A+AH FI LP GYDT+VG+RG +LSGGQKQR+++AR + +P IL+LDE TSALD
Sbjct: 127 AAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALD 186
Query: 844 SESESIVQQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLERGGAY 903
ESESI+Q+A+D +S RTT+++AHRL+T+ +A+ IVV++ G +VE G HR+L+ + GAY
Sbjct: 187 LESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAY 246
Query: 904 HDLVKLAS 911
L + +
Sbjct: 247 EHLYSIQN 254
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 294 bits (753), Expect = 3e-91
Identities = 117/239 (48%), Positives = 160/239 (66%), Gaps = 3/239 (1%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
I++ V+F Y E +LKD L ++ G VA VG SG GKST+I LI RFYD G++
Sbjct: 17 IDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQI 75
Query: 1374 MIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHK 1433
+I+G ++++ LR Q LV Q+ LF+ T+++NI LG P A+ E+ EAA+ A H
Sbjct: 76 LIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHD 135
Query: 1434 FISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQD 1493
FI +LPQGY+T+VGE GV+LSGGQKQR++IAR L +L+LDEA+SALDLESE +Q+
Sbjct: 136 FIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQE 195
Query: 1494 ALRKVSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETLLASHLNGVYASLVRA 1552
AL +SK TT++VAHRLSTI A+ I V+ +G +VE G+H L+A G Y L
Sbjct: 196 ALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK--QGAYEHLYSI 252
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 288 bits (739), Expect = 2e-89
Identities = 113/251 (45%), Positives = 166/251 (66%), Gaps = 2/251 (0%)
Query: 660 NSEGRKLSSVSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFA 719
+ R + +G +EF+ VTF YP R LR++NL IP+ KT+ALVG SG GKST+ +
Sbjct: 1 DEGKRVIDRATGDLEFRNVTFTYPGREVPA-LRNINLKIPAGKTVALVGRSGSGKSTIAS 59
Query: 720 LIERFYDPTKGLITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGK-ENATM 778
LI RFYD +G I +DGHDL+ + LR Q+ +V Q LF ++ N+ + E +
Sbjct: 60 LITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSR 119
Query: 779 KEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEP 838
++ A + A A FI+++ G DT +G+ G LSGGQ+QRIA+ARA+++D IL+LDE
Sbjct: 120 EQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEA 179
Query: 839 TSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLE 898
TSALD+ESE +Q A+D++ RT++VIAHRL+T++ A+ IVV++ G +VE G H +LL
Sbjct: 180 TSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLA 239
Query: 899 RGGAYHDLVKL 909
+ G Y L K+
Sbjct: 240 QHGVYAQLHKM 250
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 278 bits (713), Expect = 6e-86
Identities = 129/261 (49%), Positives = 172/261 (65%), Gaps = 13/261 (4%)
Query: 1295 KPLIDNVKGRKLERSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSG 1354
K +ID G +E + VTFTYP R EV L++ LK+ G VALVG SGSG
Sbjct: 4 KRVIDRATGD---------LEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSG 53
Query: 1355 KSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGN 1414
KST+ LI RFYD ++G ++++G DLRE + LR Q ALV Q LF T+ +NIA
Sbjct: 54 KSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYAR 113
Query: 1415 PKA-SWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRV 1473
+ S +IEEAA AY FI+ + G +T +GE+GV LSGGQ+QRIAIARA+L+ S +
Sbjct: 114 TEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPI 173
Query: 1474 LLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGS 1533
L+LDEA+SALD ESE+ +Q AL ++ K T++V+AHRLSTI +A+ I VV DG +VE G+
Sbjct: 174 LILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGT 233
Query: 1534 HETLLASHLNGVYASLVRAET 1554
H LLA +GVYA L + +
Sbjct: 234 HSELLAQ--HGVYAQLHKMQF 252
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 282 bits (722), Expect = 4e-87
Identities = 104/243 (42%), Positives = 160/243 (65%), Gaps = 3/243 (1%)
Query: 669 VSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPT 728
+ G ++F+ V+FAYP+RP+ ++L+ L + + ALVG +G GKSTV AL++ Y PT
Sbjct: 8 LEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT 67
Query: 729 KGLITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMG-KENATMKEAVAACKA 787
G + LDG L + ++L Q+ VGQEP +F S+ EN+ G + TM+E AA
Sbjct: 68 GGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVK 127
Query: 788 ASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESE 847
+ AHSFIS LP GYDT+V + G+QLSGGQ+Q +ALARA+I+ P +L+LD+ TSALD+ S+
Sbjct: 128 SGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQ 187
Query: 848 SIVQQAIDKIS--VGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLERGGAYHD 905
V+Q + + R+ ++I L+ V+ A+ I+ L+ G++ E G H+QL+E+ G Y
Sbjct: 188 LQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGCYWA 247
Query: 906 LVK 908
+V+
Sbjct: 248 MVQ 250
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 271 bits (694), Expect = 3e-83
Identities = 97/242 (40%), Positives = 157/242 (64%), Gaps = 5/242 (2%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
++ + V+F YP+RP+V VL+ ++ G + ALVG +GSGKSTV L+Q Y P G++
Sbjct: 12 VQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQL 71
Query: 1374 MIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALG-NPKASWAEIEEAAEEAYIH 1432
+++G L + ++L +Q A VGQEP +F ++++NIA G K + EI AA ++ H
Sbjct: 72 LLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAH 131
Query: 1433 KFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQ 1492
FIS LPQGY+T+V E+G QLSGGQ+Q +A+ARA+++ VL+LD+A+SALD S+ V+
Sbjct: 132 SFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVE 191
Query: 1493 DALRKVSKRA--TTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETLLASHLNGVYASLV 1550
L + +R + +++ LS + +A+ I + GA+ E G+H+ L+ G Y ++V
Sbjct: 192 QLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEK--KGCYWAMV 249
Query: 1551 RA 1552
+A
Sbjct: 250 QA 251
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 267 bits (685), Expect = 3e-82
Identities = 111/241 (46%), Positives = 161/241 (66%), Gaps = 2/241 (0%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
I F+ + F Y VIL ++NL I + + +VG SG GKST+ LI+RFY P G +
Sbjct: 2 ITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV 60
Query: 733 TLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHS 792
+DGHDL WLR Q+G+V Q+ +L SI++N+ + ++++ + A K A AH
Sbjct: 61 LIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHD 120
Query: 793 FISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQ 852
FISEL GY+T VG++G LSGGQ+QRIA+ARA++ +P+IL+ DE TSALD ESE ++ +
Sbjct: 121 FISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 180
Query: 853 AIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLER-GGAYHDLVKLAS 911
+ KI GRT I+IAHRL+TVKNA+ I+V+++G +VE G H++LL Y L +L S
Sbjct: 181 NMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQS 240
Query: 912 E 912
+
Sbjct: 241 D 241
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 264 bits (675), Expect = 6e-81
Identities = 105/242 (43%), Positives = 152/242 (62%), Gaps = 2/242 (0%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
I + + F Y +L + L +K G ++ +VG SGSGKST+ LIQRFY P G+V
Sbjct: 2 ITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV 60
Query: 1374 MIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHK 1433
+I+G DL + WLR+Q +V Q+ L +I DNI+L NP S ++ AA+ A H
Sbjct: 61 LIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHD 120
Query: 1434 FISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQD 1493
FIS L +GY T VGE G LSGGQ+QRIAIARA++ ++L+ DEA+SALD ESE +
Sbjct: 121 FISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 180
Query: 1494 ALRKVSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETLLASHLNGVYASLVRAE 1553
+ K+ K T I++AHRLST++ A+ I V+ G +VE G H+ LL+ +Y+ L + +
Sbjct: 181 NMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLS-EPESLYSYLYQLQ 239
Query: 1554 TE 1555
++
Sbjct: 240 SD 241
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 259 bits (664), Expect = 2e-79
Identities = 99/238 (41%), Positives = 154/238 (64%), Gaps = 3/238 (1%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
+ + V FAY + ILR ++ + +A G SGGGKST+F+L+ERFY PT G I
Sbjct: 2 LSARHVDFAYDDSEQ--ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 733 TLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKEN-ATMKEAVAACKAASAH 791
T+DG + ++ ++ R+QIG V Q+ + A +I EN+ G E T ++ A A
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 792 SFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQ 851
SF+ +P +T+VG+RG ++SGGQ+QR+A+ARA +++P+IL+LDE T++LDSESES+VQ
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 852 QAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLERGGAYHDLVKL 909
+A+D + GRTT+VIAHRL+T+ +A+ I +++G + G H +L+ Y V
Sbjct: 180 KALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVSE 237
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 253 bits (648), Expect = 3e-77
Identities = 92/239 (38%), Positives = 146/239 (61%), Gaps = 5/239 (2%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
+ + V F Y ++ L+D + + S++A G SG GKST+ L++RFY P G++
Sbjct: 2 LSARHVDFAYDDSEQI--LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 1374 MIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALG-NPKASWAEIEEAAEEAYIH 1432
I+G + I+++ R Q V Q+ A+ AGTIR+N+ G + ++ + + A+
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 1433 KFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQ 1492
F+ ++P T+VGE GV++SGGQ+QR+AIARA L+ ++L+LDEA+++LD ESE VQ
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 1493 DALRKVSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETLLASHLNGVYASLVR 1551
AL + K TT+V+AHRLSTI +A+ I + G + G H L+A+H +YA V
Sbjct: 180 KALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATH--PLYAKYVS 236
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 236 bits (604), Expect = 8e-71
Identities = 65/257 (25%), Positives = 118/257 (45%), Gaps = 20/257 (7%)
Query: 648 EIIDRVPEIDPYNSEGRKLSSVSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALV 707
E + E ++ RK SS + F + P +L+++NL I + LA+
Sbjct: 14 EGFGELLEKVQQSNGDRKHSSDENNVSFSHLCLVG--NP---VLKNINLNIEKGEMLAIT 68
Query: 708 GTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILE 767
G++G GK+++ LI + ++G+I G ++ Q + +I E
Sbjct: 69 GSTGSGKTSLLMLILGELEASEGIIKHSG-------------RVSFCSQFSWIMPGTIKE 115
Query: 768 NVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMI 827
N++ G + KA I++ +T +G+ G LSGGQ+ RI+LARA+
Sbjct: 116 NIIFGVS-YDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVY 174
Query: 828 KDPRILLLDEPTSALDSESES-IVQQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGS 886
KD + LLD P LD +E + + + K+ +T I++ ++ ++ A+ I++L QGS
Sbjct: 175 KDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGS 234
Query: 887 VVEIGNHRQLLERGGAY 903
G +L +
Sbjct: 235 SYFYGTFSELQSLRPDF 251
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 222 bits (568), Expect = 5e-66
Identities = 63/253 (24%), Positives = 123/253 (48%), Gaps = 17/253 (6%)
Query: 1309 SKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDP 1368
+ + V+F++ VLK+ L ++ G M+A+ G +GSGK++++ LI +
Sbjct: 29 DRKHSSDENNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEA 88
Query: 1369 NQGKVMIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEE 1428
++G + G + + Q + GTI++NI G + +
Sbjct: 89 SEGIIKHSG-------------RVSFCSQFSWIMPGTIKENIIFG-VSYDEYRYKSVVKA 134
Query: 1429 AYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESE 1488
+ + I+ + T +GE GV LSGGQ+ RI++ARA+ K + + LLD LD+ +E
Sbjct: 135 CQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTE 194
Query: 1489 KHVQDA-LRKVSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETLLASHLNGVYA 1547
+ V ++ + K+ T I+V ++ +R+A+ I ++ G+ YG+ L + L ++
Sbjct: 195 EQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQS--LRPDFS 252
Query: 1548 SLVRAETEANAFS 1560
S + + F+
Sbjct: 253 SKLMGYDTFDQFT 265
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 174 bits (443), Expect = 7e-50
Identities = 69/230 (30%), Positives = 110/230 (47%), Gaps = 9/230 (3%)
Query: 673 IEFKGVTFAYPSRPETV-ILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGL 731
I+ K VT Y E + L+++NL I + ++++G SG GKST+ +I PT+G
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 732 ITLDGHDLKSL----QVKWLRTQIGMVGQEPILFAT-SILENVLMGKENATMKEAVAACK 786
+ +D L K R +IG V Q+ L + LENV + +
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 787 AASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSES 846
A + L + + QLSGGQ+QR+A+ARA+ +P I+L D+PT ALDS++
Sbjct: 122 RKRALECLKMAELE-ERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKT 180
Query: 847 ESIVQQAIDKI--SVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHR 894
+ Q + K+ G+T +V+ H + + I+ L G V R
Sbjct: 181 GEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLR 230
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 170 bits (433), Expect = 2e-48
Identities = 67/229 (29%), Positives = 113/229 (49%), Gaps = 13/229 (5%)
Query: 1314 IELKMVTFTYPSR-PEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGK 1372
I+LK VT TY + LK+ L +K G V+++G SGSGKST++ +I P +G+
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 1373 VMIEGVDLREIN----VKWLRKQTALVGQEPALFAG-TIRDNIALG--NPKASWAEIEEA 1425
V I+ + +++ K R + V Q+ L T +N+ L EE
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 1426 AEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDL 1485
+ A ++ L + + QLSGGQ+QR+AIARA+ ++L D+ + ALD
Sbjct: 122 RKRALECLKMAELEERFANHKPN---QLSGGQQQRVAIARALANNPPIILADQPTGALDS 178
Query: 1486 ESEKHVQDALRKVSKR--ATTIVVAHRLSTIREANMIAVVRDGAVVEYG 1532
++ + + L+K+++ T +VV H ++ R I ++DG V
Sbjct: 179 KTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREE 227
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 155 bits (393), Expect = 4e-43
Identities = 62/232 (26%), Positives = 111/232 (47%), Gaps = 14/232 (6%)
Query: 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGL 731
+++ + +T + + LNL I + L L+G SG GK+T +I +PT+G
Sbjct: 6 EVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGR 62
Query: 732 ITLDGHDLKSLQVKWLRTQIGMVGQEPILFAT-SILENVLMGKENATMKEAVAACKAASA 790
I D+ L K I MV Q ++ ++ EN+ + + + A
Sbjct: 63 IYFGDRDVTYLPPKD--RNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWA 120
Query: 791 HSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIV 850
L + + QLSGGQ+QR+A+ARA++ +P +LL+DEP S LD++ +
Sbjct: 121 AEL-----LQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAM 175
Query: 851 QQAIDKI--SVGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLER 899
+ I K+ + TTI + H + I V+++G +++IG+ ++ R
Sbjct: 176 RAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR 227
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 146 bits (370), Expect = 6e-40
Identities = 64/236 (27%), Positives = 112/236 (47%), Gaps = 26/236 (11%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
++L+ +T + T + L +K G + L+G SG GK+T + +I +P +G++
Sbjct: 7 VKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI 63
Query: 1374 MIEGVDLREINVKWLRKQTALVGQEPALFAG-TIRDNIALG--NPKASWAEIEEAAEEAY 1430
D+ + K + ++V Q A++ T+ +NIA K EI++ A
Sbjct: 64 YFGDRDVTYLPPKD--RNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAA 121
Query: 1431 ----IHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLE 1486
I + ++ P QLSGGQ+QR+A+ARAI+ VLL+DE S LD +
Sbjct: 122 ELLQIEELLNRYPA-----------QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAK 170
Query: 1487 SEKHVQDALRKV--SKRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLA 1539
++ ++K+ + TTI V H + IAV+ G +++ GS +
Sbjct: 171 LRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYL 226
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 155 bits (392), Expect = 5e-43
Identities = 56/237 (23%), Positives = 104/237 (43%), Gaps = 28/237 (11%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
++ + V E+ L L+ + + + L LVG +G GKST+ A + KG I
Sbjct: 4 MQLQDVA-------ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSI 55
Query: 733 TLDGHDLKSLQVKWLRTQIGMVGQEP-ILFATSILENVLMGKENATMKEAVAACKAASAH 791
G L++ L + Q+ FAT + + + + + T E + A
Sbjct: 56 QFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGA--- 112
Query: 792 SFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIK-------DPRILLLDEPTSALDS 844
L D ++G QLSGG+ QR+ LA +++ ++LLLDEP ++LD
Sbjct: 113 -------LALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDV 165
Query: 845 ESESIVQQAIDKISV-GRTTIVIAHRLATV-KNANTIVVLDQGSVVEIGNHRQLLER 899
+S + + + + G ++ +H L ++A+ +L G ++ G ++L
Sbjct: 166 AQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTP 222
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 147 bits (371), Expect = 3e-40
Identities = 55/237 (23%), Positives = 105/237 (44%), Gaps = 28/237 (11%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
++L+ V + T L +V+ G ++ LVG +G+GKST++ + +G +
Sbjct: 4 MQLQDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSI 55
Query: 1374 MIEGVDLREINVKWLRKQTALVGQEPAL-FAGTIRDNIALGNPKASWAEIEEAAEEAYIH 1432
G L + L A + Q+ FA + + L + E+ A
Sbjct: 56 QFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGAL-- 113
Query: 1433 KFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILK-------GSRVLLLDEASSALDL 1485
+ ++G S QLSGG+ QR+ +A +L+ ++LLLDE ++LD+
Sbjct: 114 --------ALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDV 165
Query: 1486 ESEKHVQDALRKVSKRATTIV-VAHRLS-TIREANMIAVVRDGAVVEYGSHETLLAS 1540
+ + L + ++ IV +H L+ T+R A+ +++ G ++ G E +L
Sbjct: 166 AQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTP 222
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 148 bits (376), Expect = 7e-41
Identities = 64/235 (27%), Positives = 117/235 (49%), Gaps = 13/235 (5%)
Query: 673 IEFKGVTFAYPSRPETV-ILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGL 731
I+ +T + T+ L +++L +P+ + ++G SG GKST+ + PT+G
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 732 ITLDGHDLKSL---QVKWLRTQIGMVGQEPILFAT-SILENVLMGKENATMKEAVAACKA 787
+ +DG +L +L ++ R QIGM+ Q L ++ ++ NV + E + +
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 121
Query: 788 ASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESE 847
S +G + + LSGGQKQR+A+ARA+ +P++LL DE TSALD +
Sbjct: 122 TELLSL-----VGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATT 176
Query: 848 SIVQQAIDKI--SVGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLER 899
+ + + I +G T ++I H + VK + + V+ G ++E ++
Sbjct: 177 RSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSH 231
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 147 bits (372), Expect = 3e-40
Identities = 62/241 (25%), Positives = 115/241 (47%), Gaps = 25/241 (10%)
Query: 1314 IELKMVTFTYPSRP-EVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGK 1372
I+L +T + + L + L V G + ++G SG+GKST+I + P +G
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 1373 VMIEGVDLREINVKW---LRKQTALVGQEPALFA-GTIRDNIALG------NPKASWAEI 1422
V+++G +L ++ R+Q ++ Q L + T+ N+AL +
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 121
Query: 1423 EEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSA 1482
E + S P LSGGQKQR+AIARA+ +VLL DEA+SA
Sbjct: 122 TELLSLVGLGDKHDSYPS-----------NLSGGQKQRVAIARALASNPKVLLCDEATSA 170
Query: 1483 LDLESEKHVQDALRKVSKR--ATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLA 1539
LD + + + + L+ +++R T +++ H + ++ + +AV+ +G ++E + + +
Sbjct: 171 LDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230
Query: 1540 S 1540
Sbjct: 231 H 231
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 147 bits (372), Expect = 5e-40
Identities = 63/246 (25%), Positives = 122/246 (49%), Gaps = 26/246 (10%)
Query: 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGL 731
K+ + Y +L+ ++L + ++++G+SG GKST I P++G
Sbjct: 2 KLHVIDLHKRYGGHE---VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGA 58
Query: 732 ITLDGHDLKSL-------------QVKWLRTQIGMVGQEPILFAT-SILENVLMG-KENA 776
I ++G ++ + Q++ LRT++ MV Q L++ ++LENV+ +
Sbjct: 59 IIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL 118
Query: 777 TMKEAVAACKAASAHSFISELPLGYDTQVGDR-GTQLSGGQKQRIALARAMIKDPRILLL 835
+ + A +A + +G D + + LSGGQ+QR+++ARA+ +P +LL
Sbjct: 119 GLSKHDARERALKYLAK-----VGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLF 173
Query: 836 DEPTSALD-SESESIVQQAIDKISVGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNH 893
DEPTSALD +++ G+T +V+ H + ++ ++ ++ L QG + E G+
Sbjct: 174 DEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDP 233
Query: 894 RQLLER 899
Q+
Sbjct: 234 EQVFGN 239
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 142 bits (360), Expect = 2e-38
Identities = 60/264 (22%), Positives = 114/264 (43%), Gaps = 38/264 (14%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
+ + + Y VLK L+ + G +++++G SGSGKST + I P++G +
Sbjct: 3 LHVIDLHKRYG---GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI 59
Query: 1374 MIEGVDLREIN-------------VKWLRKQTALVGQEPALFAG-TIRDNIALG---NPK 1416
++ G ++ + ++ LR + +V Q L++ T+ +N+
Sbjct: 60 IVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG 119
Query: 1417 ASWAEIEEAAEEA-----YIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGS 1471
S + E A + + P LSGGQ+QR++IARA+
Sbjct: 120 LSKHDARERALKYLAKVGIDERAQGKYPV-----------HLSGGQQQRVSIARALAMEP 168
Query: 1472 RVLLLDEASSALDLESEKHVQDALRKVSKRATTIV-VAHRLSTIRE-ANMIAVVRDGAVV 1529
VLL DE +SALD E V ++++++ T+V V H + R ++ + + G +
Sbjct: 169 DVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 228
Query: 1530 EYGSHETLLASHLNGVYASLVRAE 1553
E G E + + + ++
Sbjct: 229 EEGDPEQVFGNPQSPRLQQFLKGS 252
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 132 bits (334), Expect = 1e-35
Identities = 41/199 (20%), Positives = 86/199 (43%), Gaps = 18/199 (9%)
Query: 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGL 731
K+E + ++ Y + +L + + I + G +G GK+T+ I + P KG
Sbjct: 2 KLEIRDLSVGY----DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGE 57
Query: 732 ITLDGHDLKSLQVKWLRTQIGMVGQEPILFA-TSILENVLMGKENATMKEAVAACKAASA 790
I +G + ++ +I + +E I+ S+ + + +K A
Sbjct: 58 IIYNGVP-----ITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDA-- 110
Query: 791 HSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIV 850
L + + +LS G +R+ LA ++ + I +LD+P A+D +S+ V
Sbjct: 111 ------LESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKV 164
Query: 851 QQAIDKISVGRTTIVIAHR 869
++I +I + ++I+ R
Sbjct: 165 LKSILEILKEKGIVIISSR 183
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 126 bits (318), Expect = 1e-33
Identities = 37/214 (17%), Positives = 95/214 (44%), Gaps = 27/214 (12%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
+E++ ++ Y + VL+ + ++ G++V G +G GK+T++ I + P +G++
Sbjct: 3 LEIRDLSVGY----DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 58
Query: 1374 MIEGVDLREINVKWLRKQTALVGQEPALFAG-TIRDNIALG----NPKASWAEIEEAAEE 1428
+ GV + ++ + + +E + ++ D + K + EI +A E
Sbjct: 59 IYNGVP-----ITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALES 113
Query: 1429 AYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESE 1488
+ + +LS G +R+ +A +L + + +LD+ A+D +S+
Sbjct: 114 VEVLDL------------KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSK 161
Query: 1489 KHVQDALRKVSKRATTIVVAHRLSTIREANMIAV 1522
V ++ ++ K ++++ R + ++
Sbjct: 162 HKVLKSILEILKEKGIVIISSR-EELSYCDVNEN 194
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 132 bits (334), Expect = 5e-35
Identities = 51/246 (20%), Positives = 105/246 (42%), Gaps = 23/246 (9%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
+ + + + E L + V G + ++G +GSGKST+I +I F ++G+V
Sbjct: 5 LRTENIVKYFG---EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRV 61
Query: 1374 MIEGVDLREINVKWL-RKQTALVGQEPALFAG-TIRDNIALGNP------------KASW 1419
E D+ L Q P T+ +N+ +G K
Sbjct: 62 YFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWI 121
Query: 1420 AEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEA 1479
+ EE E+A+ L Y+ + G +LSGGQ + + I RA++ +++++DE
Sbjct: 122 PKEEEMVEKAFKILEFLKLSHLYDRKAG----ELSGGQMKLVEIGRALMTNPKMIVMDEP 177
Query: 1480 SSALDLESEKHVQDALRKVSKRATTIV-VAHRLSTIRE-ANMIAVVRDGAVVEYGSHETL 1537
+ + + + + ++ + T + + HRL + + + V+ +G ++ G E
Sbjct: 178 IAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEE 237
Query: 1538 LASHLN 1543
+ + L+
Sbjct: 238 IKNVLS 243
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 131 bits (330), Expect = 2e-34
Identities = 49/244 (20%), Positives = 103/244 (42%), Gaps = 25/244 (10%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
+ + + + E L +++ + ++G +G GKST+ +I F +G +
Sbjct: 5 LRTENIVKYFG---EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRV 61
Query: 733 TLDGHDLKSLQVKWL-RTQIGMVGQEPILFAT-SILENVLMGKE-------------NAT 777
+ D+ + + L I Q P ++LEN+L+G+
Sbjct: 62 YFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWI 121
Query: 778 MKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDE 837
KE KA F L + +LSGGQ + + + RA++ +P+++++DE
Sbjct: 122 PKEEEMVEKAFKILEF-----LKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDE 176
Query: 838 PTSALDSESESIVQQAIDKI-SVGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQ 895
P + + + + ++ + G T ++I HRL V N + + V+ G ++ G +
Sbjct: 177 PIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 236
Query: 896 LLER 899
++
Sbjct: 237 EIKN 240
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 131 bits (330), Expect = 1e-34
Identities = 59/231 (25%), Positives = 106/231 (45%), Gaps = 12/231 (5%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
+E + + Y ++ ++L +P + + L+G +G GK+T + I KG I
Sbjct: 7 LEVQSLHVYYG---AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI 63
Query: 733 TLDGHDLKSL-QVKWLRTQIGMVGQEPILFAT-SILENVLMGKENATMKEAVAACKAASA 790
+G D+ + R I +V + +F ++ EN++MG N KE +
Sbjct: 64 IFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEW-- 121
Query: 791 HSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIV 850
I L ++ G LSGG++Q +A+ RA++ P++L++DEP+ L S V
Sbjct: 122 ---IFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEV 178
Query: 851 QQAIDKI-SVGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLER 899
+ I KI G T +++ A+ VL+ G +V G +LL+
Sbjct: 179 FEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 123 bits (311), Expect = 4e-32
Identities = 59/232 (25%), Positives = 109/232 (46%), Gaps = 14/232 (6%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
+E++ + Y + +K LKV G +V L+G +G+GK+T + I +GK+
Sbjct: 7 LEVQSLHVYYG---AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI 63
Query: 1374 MIEGVDLREIN-VKWLRKQTALVGQEPALFAG-TIRDNIALG-NPKASWAEIEEAAEEAY 1430
+ G D+ R ALV + +F T+ +N+ +G + I+ E +
Sbjct: 64 IFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIF 123
Query: 1431 IHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKH 1490
SL + ++ + G LSGG++Q +AI RA++ ++L++DE S L
Sbjct: 124 ------SLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSE 177
Query: 1491 VQDALRKVSKRATTIV-VAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLAS 1540
V + ++K+++ TTI+ V + A+ V+ G +V G LL +
Sbjct: 178 VFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 130 bits (328), Expect = 2e-34
Identities = 67/231 (29%), Positives = 108/231 (46%), Gaps = 14/231 (6%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
++ + VT A+ E V+ + +NL I + + VG SG GKST+ +I T G +
Sbjct: 1 VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL 57
Query: 733 TLDGHDLKSLQVKWLRTQIGMVGQEPILF-ATSILENVLMGKENATMKEAVAACKAASAH 791
+ + +GMV Q L+ S+ EN+ G + A K+ V +
Sbjct: 58 FIGEKRMNDT--PPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQV- 114
Query: 792 SFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQ 851
L L + + LSGGQ+QR+A+ R ++ +P + LLDEP S LD+ ++
Sbjct: 115 --AEVLQL--AHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMR 170
Query: 852 QAIDKI--SVGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLER 899
I ++ +GRT I + H A+ IVVLD G V ++G +L
Sbjct: 171 IEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 221
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 122 bits (307), Expect = 1e-31
Identities = 60/236 (25%), Positives = 97/236 (41%), Gaps = 26/236 (11%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
++L+ VT + EV V KD L + G V VG SG GKST++ +I G +
Sbjct: 1 VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL 57
Query: 1374 MIEGVDLREINVKWLRKQTALVGQEPALFAG-TIRDNIALG------NPKASWAEIEEAA 1426
I + + + +V Q AL+ ++ +N++ G + + + A
Sbjct: 58 FIGEKRMN--DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVA 115
Query: 1427 EEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLE 1486
E + + P+ LSGGQ+QR+AI R ++ V LLDE S LD
Sbjct: 116 EVLQLAHLLDRKPK-----------ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAA 164
Query: 1487 SEKHVQDALRKV--SKRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLA 1539
++ + ++ T I V H A+ I V+ G V + G L
Sbjct: 165 LRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYH 220
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 130 bits (328), Expect = 2e-34
Identities = 54/236 (22%), Positives = 109/236 (46%), Gaps = 16/236 (6%)
Query: 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGL 731
+ V + E +R ++L + + + L+G SG GK+T +I +P++G
Sbjct: 3 GVRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQ 59
Query: 732 ITLDGHDL----KSLQVKWLRTQIGMVGQEPILFAT-SILENVLMGKENATMKEAVAACK 786
I + + K + V I MV Q L+ ++ +N+ + + +
Sbjct: 60 IYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQR 119
Query: 787 AASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSES 846
LG + + +LSGGQ+QR+AL RA+++ P++ L+DEP S LD++
Sbjct: 120 VREVAEL-----LGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKL 174
Query: 847 ESIVQQAIDKISV--GRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLER 899
++ + K+ G TTI + H + I V+++G + ++G+ ++ ++
Sbjct: 175 RVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK 230
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 126 bits (318), Expect = 4e-33
Identities = 64/241 (26%), Positives = 112/241 (46%), Gaps = 28/241 (11%)
Query: 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGK 1372
G+ L V + EVT +++ L+VK G + L+G SG GK+T + +I +P++G+
Sbjct: 3 GVRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQ 59
Query: 1373 VMIEGVDL----REINVKWLRKQTALVGQEPALFAGTIRDNIALGNP---KASWAEIEEA 1425
+ I + + I V + A+V Q AL+ + K EI++
Sbjct: 60 IYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQR 119
Query: 1426 AEEAY----IHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASS 1481
E + + ++ P+ +LSGGQ+QR+A+ RAI++ +V L+DE S
Sbjct: 120 VREVAELLGLTELLNRKPR-----------ELSGGQRQRVALGRAIVRKPQVFLMDEPLS 168
Query: 1482 ALDLESEKHVQDALRKV--SKRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLL 1538
LD + ++ L+K+ TTI V H + IAV+ G + + GS + +
Sbjct: 169 NLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVY 228
Query: 1539 A 1539
Sbjct: 229 D 229
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 129 bits (326), Expect = 3e-34
Identities = 54/247 (21%), Positives = 108/247 (43%), Gaps = 18/247 (7%)
Query: 671 GKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKG 730
G + K + + IL+ ++ I + L+G +G GK+T +I P+ G
Sbjct: 1 GAVVVKDLRKRIGKKE---ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSG 57
Query: 731 LITLDGHDLKSLQVKWLRTQIGMVGQEPILFAT-SILENVLMGKENATMKEAVAACKAAS 789
++T+ G ++ +R I + +E + +E + +
Sbjct: 58 IVTVFGKNVVEEP-HEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVER 116
Query: 790 AHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESI 849
A G ++ DR + S G +++ +ARA++ +PR+ +LDEPTS LD +
Sbjct: 117 ATEI-----AGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNARE 171
Query: 850 VQQAIDKISVGRTTIVIA--HRLATVKNANTIVVLDQGSVVEIGNHRQLLERGG------ 901
V++ + + S TI+++ + L + I ++ G++VE G +L ER
Sbjct: 172 VRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQNIEE 231
Query: 902 AYHDLVK 908
+ ++VK
Sbjct: 232 VFEEVVK 238
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 123 bits (311), Expect = 4e-32
Identities = 56/247 (22%), Positives = 115/247 (46%), Gaps = 20/247 (8%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
+ +K + + +LK +++ G + L+G +G+GK+T + +I P+ G V
Sbjct: 3 VVVKDLRKRIG---KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIV 59
Query: 1374 MIEGVDLREINVKWLRKQTALVGQEPALFAG-TIRDN--IALGNPKASWAEIEEAAEEAY 1430
+ G + +RK + + +E + + G +S +EIEE E A
Sbjct: 60 TVFGKN-VVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERA- 117
Query: 1431 IHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKH 1490
G ++ + S G +++ IARA++ R+ +LDE +S LD+ + +
Sbjct: 118 TEIA------GLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNARE 171
Query: 1491 VQDALRKVSKRATTIV-VAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLASH----LNG 1544
V+ L++ S+ TI+ +H + + + IA++ +G +VE G+ E L + +
Sbjct: 172 VRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQNIEE 231
Query: 1545 VYASLVR 1551
V+ +V+
Sbjct: 232 VFEEVVK 238
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 121 bits (304), Expect = 3e-31
Identities = 64/235 (27%), Positives = 112/235 (47%), Gaps = 13/235 (5%)
Query: 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGL 731
+I K V+ + + + V L ++N+ I + + ++G SG GK+T +I P+ G
Sbjct: 3 RIIVKNVSKVFK-KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
Query: 732 ITLDGHDLKSLQVKWLRT---QIGMVGQEPILFAT-SILENVLMGKENATMKEAVAACKA 787
+ D + S + +IGMV Q L+ + EN+ N M + +
Sbjct: 62 LYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRV 121
Query: 788 ASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESE 847
L + +LSG Q+QR+ALARA++KDP +LLLDEP S LD+
Sbjct: 122 EEVAKI-----LDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMR 176
Query: 848 SIVQQAIDKI--SVGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLER 899
+ + ++ +G T +V++H A + A+ + VL +G +V++G L +
Sbjct: 177 DSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN 231
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 114 bits (286), Expect = 7e-29
Identities = 64/235 (27%), Positives = 112/235 (47%), Gaps = 17/235 (7%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
I +K V+ + + +V L + + ++ G ++G SG+GK+T + +I P+ G++
Sbjct: 4 IIVKNVSKVFK-KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL 62
Query: 1374 MIEGVDLREINVKWLR---KQTALVGQEPALFAG-TIRDNIA--LGNPKASWAEIEEAAE 1427
+ + + ++ +V Q AL+ T +NIA L N K S EI + E
Sbjct: 63 YFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVE 122
Query: 1428 EAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLES 1487
E I + + +LSG Q+QR+A+ARA++K +LLLDE S LD
Sbjct: 123 EVAKILDIHHVLNHFPR-------ELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARM 175
Query: 1488 EKHVQDALRKV--SKRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLA 1539
+ +++V T +VV+H + I A+ + V+ G +V+ G E L
Sbjct: 176 RDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD 230
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 115 bits (288), Expect = 3e-29
Identities = 60/233 (25%), Positives = 121/233 (51%), Gaps = 24/233 (10%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
IE++ ++ + + L + LKV+ G ++G +G+GK+ + LI F+ P+ G++
Sbjct: 2 IEIESLSRKWKN----FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 1374 MIEGVDLREINVKWLRKQTALVGQEPALFAG-TIRDNIA--LGNPKASWAE-IEEAAEEA 1429
+++G D+ +++ + + A V Q +LF ++ N+ + K + + + A +
Sbjct: 58 LLDGKDVTDLSPE--KHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDL 115
Query: 1430 YIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEK 1489
I + P LSGG++QR+A+ARA++ ++LLLDE SALD +++
Sbjct: 116 KIEHLLDRNPL-----------TLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQE 164
Query: 1490 HVQDALRKV--SKRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLA 1539
+ ++ L + + T + + H + R A+ IAVV DG +++ G E +
Sbjct: 165 NAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFE 217
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 112 bits (282), Expect = 2e-28
Identities = 63/231 (27%), Positives = 111/231 (48%), Gaps = 18/231 (7%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
IE + ++ + L +L+L + S + ++G +G GK+ LI F+ P G I
Sbjct: 2 IEIESLSRKWK----NFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 733 TLDGHDLKSLQVKWLRTQIGMVGQEPILF-ATSILENVLMGKENATMKEAVAACKAASAH 791
LDG D+ L + + I V Q LF ++ +N+ G +K+ A
Sbjct: 58 LLDGKDVTDLSPE--KHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARD- 114
Query: 792 SFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQ 851
L + + LSGG++QR+ALARA++ +P+ILLLDEP SALD ++ +
Sbjct: 115 -------LKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAR 167
Query: 852 QAIDKISV--GRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLER 899
+ + + T + I H + A+ I V+ G ++++G ++ E+
Sbjct: 168 EMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK 218
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 115 bits (288), Expect = 4e-29
Identities = 65/216 (30%), Positives = 107/216 (49%), Gaps = 16/216 (7%)
Query: 1332 LKDFCLKV---KGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWL 1388
L +F L V G L+G +G+GKS + LI P++G+V + G D+ + +
Sbjct: 11 LGNFRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE-- 68
Query: 1389 RKQTALVGQEPALFAG-TIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVG 1447
R+ V Q+ ALF ++ NIA G E + E G +
Sbjct: 69 RRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEK-------LGIAHLLD 121
Query: 1448 ESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSK--RATTI 1505
+LSGG++QR+A+ARA++ R+LLLDE SA+DL+++ + + LR V + +
Sbjct: 122 RKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPIL 181
Query: 1506 VVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLAS 1540
V H L A+ +AV+ +G +VE G + L ++
Sbjct: 182 HVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSA 217
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 112 bits (280), Expect = 6e-28
Identities = 59/201 (29%), Positives = 97/201 (48%), Gaps = 13/201 (6%)
Query: 703 TLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIGMVGQEPILFA 762
L+G +G GKS LI P +G + L+G D+ L + R IG V Q+ LF
Sbjct: 26 YCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGFVPQDYALFP 83
Query: 763 T-SILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIA 821
S+ N+ G N E + + LG + + +LSGG++QR+A
Sbjct: 84 HLSVYRNIAYGLRNVERVERDRRVREMAEK-------LGIAHLLDRKPARLSGGERQRVA 136
Query: 822 LARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISV--GRTTIVIAHRLATVKN-ANT 878
LARA++ PR+LLLDEP SA+D +++ ++ + + + + + H L A+
Sbjct: 137 LARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADE 196
Query: 879 IVVLDQGSVVEIGNHRQLLER 899
+ V+ G +VE G ++L
Sbjct: 197 VAVMLNGRIVEKGKLKELFSA 217
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 92.4 bits (228), Expect = 7e-22
Identities = 22/198 (11%), Positives = 46/198 (23%), Gaps = 31/198 (15%)
Query: 704 LALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIGMVGQEPILFAT 763
+ + G G GK+T+ I + + + I G++ I +
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSK 62
Query: 764 SILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALA 823
L+G V + + A
Sbjct: 63 FFTSKKLVG-----------------------------SYGVNVQYFEELAIPILERAYR 93
Query: 824 RAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKNANTIVVLD 883
A +++++DE + + I L
Sbjct: 94 EAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLP 153
Query: 884 QGSVVEIG--NHRQLLER 899
++E+ N +LE
Sbjct: 154 GAVLIELTPENRDVILED 171
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 90.0 bits (222), Expect = 4e-21
Identities = 19/190 (10%), Positives = 41/190 (21%), Gaps = 29/190 (15%)
Query: 1345 VALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQEPALFAG 1404
+ + G G GK+T++ I E V E + + G++ +
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSK 62
Query: 1405 TIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIA 1464
+G+ V + A
Sbjct: 63 FFTSKKLVGS-----------------------------YGVNVQYFEELAIPILERAYR 93
Query: 1465 RAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIREANMIAVVR 1524
A +V+++DE + + I +
Sbjct: 94 EAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLP 153
Query: 1525 DGAVVEYGSH 1534
++E
Sbjct: 154 GAVLIELTPE 163
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 323 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 80.3 bits (196), Expect = 2e-16
Identities = 45/321 (14%), Positives = 99/321 (30%), Gaps = 2/321 (0%)
Query: 335 LFKYSTKLDMILVLLGCIGALINGGALPWYSYFFGNFVNKIANESSDPDKTQMMKDAEKI 394
++ K + I +I G ++ + N + ++ I
Sbjct: 5 YLQF-VKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAI 63
Query: 395 CLLMTVLAAIVMMGAYLEITCWRLVGERSAQRIRTKYLRAVLRQDIAFFDTEVSTSDIMH 454
+ + + + ++ + + IR K + F+ I
Sbjct: 64 GIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISR 123
Query: 455 GISSDIAQIQEVMGEKVAHFAHNIFTFICGYTVGFLRSWKVSLVVLSVTPLMMFCGMAYK 514
I+ Q ++ + + + + T I ++ F K++L L + P + +
Sbjct: 124 VINDVE-QTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFF 182
Query: 515 AVYVGLTSKEEASYRRAGSVAEQAISSIRTVFSFVAEDHFAVRYAGLLADSIPFGAKLGF 574
LT + + + + I V SF ED+ A + + + K
Sbjct: 183 GRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTR 242
Query: 575 AKGAGMGVIYLVTYATWALAFWYGSILVARKELSGGAAIACFFGVNVGGRGLALSLSYFA 634
I VT + G+ L ++ G A + + L ++ F
Sbjct: 243 WNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFT 302
Query: 635 QFAQGTVAATRVFEIIDRVPE 655
Q + RVF++ID +
Sbjct: 303 TLTQSFASMDRVFQLIDEDYD 323
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 323 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 65.3 bits (157), Expect = 1e-11
Identities = 44/321 (13%), Positives = 111/321 (34%), Gaps = 3/321 (0%)
Query: 979 LSEIWKLQRPEFAMIIFGFILGMHAGAILSIFPLILGQALQVYFDDTASTLRRDVRYLSL 1038
+ + +P I I+G+ I + PL++ A+ ++ A T V +L++
Sbjct: 2 IKRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTI 61
Query: 1039 ALVGLGFGCIIFMTGQQGFCGWAGTKLTMRVRELLFRSILKQEPGWFDFEENSTGVLVSR 1098
A+ F +I + + + ++ + + + + V
Sbjct: 62 AIGIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVI 121
Query: 1099 LSIDSISFRSVLGDRFSVLLMGLSSAAVGLGVSLVLNWRLTLVAAALTPFTLGASYLSLI 1158
+ + ++ ++ + L + + +S++ + L AAL F + +
Sbjct: 122 SRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVF 181
Query: 1159 INVGPKID---NSSYAKASSIASGAVSNIRTVTTFSAQEQIINSFDKALSEPKKKSVKRS 1215
K+ + + A+ V I V +F+ ++ +FDK + +++K +
Sbjct: 182 FGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHT 241
Query: 1216 QILGLTLGFSQGAMYVAYTFTLWFGAYLVKQGHASFGVVYKIFLILVLSSFSVGQLAGLA 1275
+ + + + GAYL G + G + L L + +L
Sbjct: 242 RWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASF 301
Query: 1276 PDTSMAATAIPAVLQITKRKP 1296
+ + ++ V Q+
Sbjct: 302 TTLTQSFASMDRVFQLIDEDY 322
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 319 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 78.4 bits (191), Expect = 6e-16
Identities = 43/321 (13%), Positives = 102/321 (31%), Gaps = 9/321 (2%)
Query: 335 LFKYSTKLDMILVLLGCIGALINGGALPWYSYFFGNFVNKIANESSDPDKTQMMKDAEKI 394
L+ +++ I ++N + + ++ ++ +
Sbjct: 7 LWPT-IAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTD-------RSVLLWM 58
Query: 395 CLLMTVLAAIVMMGAYLEITCWRLVGERSAQRIRTKYLRAVLRQDIAFFDTEVSTSDIMH 454
L++ L + + +Y+ C V + +R + ++ +AFFD + + + +
Sbjct: 59 PLVVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSR 118
Query: 455 GISSDIAQIQEVMGEKVAHFAHNIFTFICGYTVGFLRSWKVSLVVLSVTPLMMFCGMAYK 514
G + + + ++V+ + + + K
Sbjct: 119 ITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSK 178
Query: 515 AVYVGLTSKEEASYRRAGSVAEQAISSIRTVFSFVAEDHFAVRYAGLLADSIPFGAKLGF 574
+ + + + + AEQ + + V F ++ R+ + G K+
Sbjct: 179 RFRSI-SKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVS 237
Query: 575 AKGAGMGVIYLVTYATWALAFWYGSILVARKELSGGAAIACFFGVNVGGRGLALSLSYFA 634
A +I L+ A + S L+ G F + R L + A
Sbjct: 238 ASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNA 297
Query: 635 QFAQGTVAATRVFEIIDRVPE 655
QF +G A +F I+D E
Sbjct: 298 QFQRGMAACQTLFAILDSEQE 318
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 319 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 56.5 bits (134), Expect = 9e-09
Identities = 42/315 (13%), Positives = 101/315 (32%), Gaps = 4/315 (1%)
Query: 982 IWKLQRPEFAMIIFGFILGMHAGAILSIFPLILGQALQVYFDDTASTLRRDVRYLSLALV 1041
+W P A +I I + A + +L L F T ++ + ++ L ++
Sbjct: 7 LWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSV---LLWMPLVVI 63
Query: 1042 GLGFGCIIFMTGQQGFCGWAGTKLTMRVRELLFRSILKQEPGWFDFEENSTGVLVSRLSI 1101
GL + +C + + + P F ++++ +L
Sbjct: 64 GL-MILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYD 122
Query: 1102 DSISFRSVLGDRFSVLLMGLSSAAVGLGVSLVLNWRLTLVAAALTPFTLGASYLSLIINV 1161
S G +V+ G S + + + ++ ++ +S
Sbjct: 123 SEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRS 182
Query: 1162 GPKIDNSSYAKASSIASGAVSNIRTVTTFSAQEQIINSFDKALSEPKKKSVKRSQILGLT 1221
K ++ + ++ A + + V F QE FDK ++ + + +K ++
Sbjct: 183 ISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSIS 242
Query: 1222 LGFSQGAMYVAYTFTLWFGAYLVKQGHASFGVVYKIFLILVLSSFSVGQLAGLAPDTSMA 1281
Q +A F L+ ++ + G + +F ++ + L +
Sbjct: 243 DPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRG 302
Query: 1282 ATAIPAVLQITKRKP 1296
A + I +
Sbjct: 303 MAACQTLFAILDSEQ 317
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.4 bits (119), Expect = 3e-07
Identities = 19/169 (11%), Positives = 41/169 (24%), Gaps = 10/169 (5%)
Query: 1344 MVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQEPALFA 1403
V L G G GK+T+I + V + + + + +
Sbjct: 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLS 62
Query: 1404 GTIRDNIALGNPKAS---WAEIEEAAEEAYIHKFI--SSLPQGYETQVGESGVQLSGGQK 1458
+ ++ + A S G V + ++ +
Sbjct: 63 RVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQ 122
Query: 1459 QRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVV 1507
I R L ++L + + ++ R V
Sbjct: 123 LFIQAVRQTLSTPGTIIL-----GTIPVPKGKPLALVEEIRNRKDVKVF 166
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.0 bits (105), Expect = 2e-05
Identities = 20/179 (11%), Positives = 51/179 (28%), Gaps = 6/179 (3%)
Query: 701 SKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIGMVGQEPIL 760
++ + L G G GK+T+ + + + + + + +
Sbjct: 1 ARHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGP 60
Query: 761 FATSILENVLMGKENATMKEAVAACKAASAHSFISE-----LPLGYDTQVGDRGTQLSGG 815
+ LE +E + V + G V D ++
Sbjct: 61 LSRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELF 120
Query: 816 QKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVK 874
+ I R + P ++L ++V++ ++ V + +R +
Sbjct: 121 SQLFIQAVRQTLSTPGTIILGTIPVPKGKPL-ALVEEIRNRKDVKVFNVTKENRNHLLP 178
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.2 bits (95), Expect = 8e-04
Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Query: 810 TQLSGGQKQRIAL----ARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRT-TI 864
LSGG+K AL A + +LDE +ALD + + I + I
Sbjct: 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFI 390
Query: 865 VIAHRLATVKNANTIV 880
VI+ + + ++ +V
Sbjct: 391 VISLKNTMFEKSDALV 406
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1560 | |||
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 99.97 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 99.96 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.96 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 99.93 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.92 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.69 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.59 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.4 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.34 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.21 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 99.16 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.01 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.85 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.79 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 98.55 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.39 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.1 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.3 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 95.78 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 95.42 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 95.36 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 95.2 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 95.0 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 94.97 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 94.85 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 94.85 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 94.77 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 94.62 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 94.62 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 94.35 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 94.2 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 94.18 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 94.07 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 94.0 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 93.99 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 93.9 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 93.85 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 93.68 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 93.57 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 93.45 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 93.43 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 93.42 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 93.21 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 93.11 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 93.04 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 92.95 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 92.86 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 92.83 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 92.82 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 92.81 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 92.77 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 92.75 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 92.73 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 92.56 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 92.51 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 92.5 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 92.42 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 92.31 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 92.29 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 92.26 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 92.23 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 92.21 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 92.16 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 91.99 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 91.96 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 91.8 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 91.78 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 91.76 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 91.73 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 91.72 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 91.61 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 91.48 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 91.4 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 91.39 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 91.24 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 91.22 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 90.98 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 90.82 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 90.79 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 90.78 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 90.72 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 90.7 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 90.64 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 90.59 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 90.48 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 90.46 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 90.32 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 90.23 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 90.2 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 90.12 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 90.03 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 90.03 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 90.03 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 89.99 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 89.99 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 89.83 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 89.81 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 89.68 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 89.59 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 89.59 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 89.57 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 89.57 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 89.52 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 89.35 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 89.26 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 89.12 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 89.04 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 88.99 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 88.97 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 88.93 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 88.9 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 88.83 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 88.68 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 88.65 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 88.65 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 88.61 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 88.59 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 88.56 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 88.5 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 88.49 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 88.48 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 88.33 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 88.33 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 88.25 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 88.22 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 88.2 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 88.19 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 88.12 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 88.02 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 87.86 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 87.85 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 87.69 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 87.61 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 87.51 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 87.51 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 87.47 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 87.4 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 87.4 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 87.39 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 87.34 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 87.31 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 87.3 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 87.11 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 86.87 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 86.85 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 86.84 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 86.65 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 86.6 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 86.59 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 86.52 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 86.51 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 86.47 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 86.46 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 86.42 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 86.4 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 86.38 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 86.34 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 86.23 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 86.16 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 86.03 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 85.94 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 85.94 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 85.89 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 85.67 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 85.47 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 85.4 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 85.39 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 85.27 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 85.27 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 85.26 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 85.26 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 85.21 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 85.04 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 85.04 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 85.01 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 84.98 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 84.97 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 84.68 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 84.61 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 84.56 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 84.54 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 84.5 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 84.4 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 84.36 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 84.35 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 84.32 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 84.32 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 84.27 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 84.19 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 84.17 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 84.16 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 84.14 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 84.12 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 84.1 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 84.1 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 84.04 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 84.04 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 83.93 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 83.88 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 83.81 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 83.71 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 83.65 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 83.55 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 83.47 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 83.46 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 83.39 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 83.38 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 83.15 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 83.15 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 83.07 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 82.84 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 82.7 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 82.66 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 82.64 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 82.62 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 82.41 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 82.41 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 82.35 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 82.31 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 82.31 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 82.26 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 82.24 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 82.22 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 82.19 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 82.19 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 82.16 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 82.12 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 82.09 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 82.04 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 82.03 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 82.0 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 81.99 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 81.95 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 81.84 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 81.83 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 81.82 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 81.8 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 81.77 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 81.76 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 81.76 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 81.73 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 81.62 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 81.61 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 81.51 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 81.48 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 81.39 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 81.38 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 81.35 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 81.27 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 81.1 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 81.02 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 80.88 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 80.88 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 80.87 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 80.84 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 80.71 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 80.55 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 80.44 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 80.43 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 80.42 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 80.27 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 80.17 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 80.13 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 80.02 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 80.02 |
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=516.34 Aligned_cols=241 Identities=44% Similarity=0.706 Sum_probs=233.4
Q ss_pred CEEEEEEEEECCCCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCE
Q ss_conf 28998789996999996300100599958939999959999888999999625689832899999855788988875231
Q 000406 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQT 1392 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~~~~~vL~nIsl~I~~Ge~vaIVG~SGSGKSTLi~LL~gl~~p~~G~I~IdG~dI~~i~~~~lR~~I 1392 (1560)
.|+|+||+|+|+.+ .+++|+||||+|++||++||||+||||||||+++|+|+++|++|+|+|||+|++.++.+++|++|
T Consensus 1 eI~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i 79 (241)
T d2pmka1 1 DITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 79 (241)
T ss_dssp EEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred CEEEEEEEEEECCC-CCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEEECCCCHHHHHCEE
T ss_conf 92999999990899-96037424899849999999999999899999999735788888999999994400246553528
Q ss_pred EEECCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 88827888997568999714999999999999999992899998099983020028999779579999999999815997
Q 000406 1393 ALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSR 1472 (1560)
Q Consensus 1393 a~VpQd~~LF~gTIreNI~~g~~~~sd~eI~~al~~a~l~d~I~~LP~GldT~Ige~G~~LSGGQkQRLaLARALL~~p~ 1472 (1560)
+||||+|++|++||+|||.++.+..++++++.+++.+++.+++..+|.|++|.++++|.+||||||||+||||||+++|+
T Consensus 80 ~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~ 159 (241)
T d2pmka1 80 GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPK 159 (241)
T ss_dssp EEECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCS
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 89824465578400035223575543888999999975578887632013443278788669889898754434441651
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHHCCCHHHHHHHHH
Q ss_conf 89985788587999999999999983489659998269577862388999969979783598889952158299999999
Q 000406 1473 VLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETLLASHLNGVYASLVRA 1552 (1560)
Q Consensus 1473 ILILDEaTSaLD~~tE~~I~~~L~~~~~~~TVIvIaHRlsti~~aDrIiVL~~G~Ive~Gt~~eLl~~~~~g~y~~l~~~ 1552 (1560)
|||||||||+||+.+++.|.+.|+++.+++|+|+||||++.++.||+|+||++|+|+|.|+|+||+++ .++.|++||+.
T Consensus 160 ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~-~~~~y~~l~~~ 238 (241)
T d2pmka1 160 ILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSE-PESLYSYLYQL 238 (241)
T ss_dssp EEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHS-TTCHHHHHHHH
T ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHC-CCCHHHHHHHH
T ss_conf 35564776555989999999999998589989999788999984999999989999998899999829-98789999998
Q ss_pred HHH
Q ss_conf 642
Q 000406 1553 ETE 1555 (1560)
Q Consensus 1553 q~~ 1555 (1560)
|.|
T Consensus 239 Q~d 241 (241)
T d2pmka1 239 QSD 241 (241)
T ss_dssp HCC
T ss_pred HCC
T ss_conf 139
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=519.88 Aligned_cols=242 Identities=49% Similarity=0.759 Sum_probs=234.4
Q ss_pred CCCCEEEEEEEEECCCCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHH
Q ss_conf 98628998789996999996300100599958939999959999888999999625689832899999855788988875
Q 000406 1310 KPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLR 1389 (1560)
Q Consensus 1310 ~~~~I~~~nVsf~Y~~~~~~~vL~nIsl~I~~Ge~vaIVG~SGSGKSTLi~LL~gl~~p~~G~I~IdG~dI~~i~~~~lR 1389 (1560)
..+.|+|+||+|+|+++ ..++|+||||+|++||++||||+||||||||+++|+|+++|++|+|.+||.|+++++.++||
T Consensus 13 ~~g~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr 91 (255)
T d2hyda1 13 KQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLR 91 (255)
T ss_dssp CSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHH
T ss_pred CCCEEEEEEEEEEECCC-CCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCCHHHHH
T ss_conf 78879999889995999-97606443899839989999889998099999999712786300015399875307888863
Q ss_pred HCEEEECCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 23188827888997568999714999999999999999992899998099983020028999779579999999999815
Q 000406 1390 KQTALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILK 1469 (1560)
Q Consensus 1390 ~~Ia~VpQd~~LF~gTIreNI~~g~~~~sd~eI~~al~~a~l~d~I~~LP~GldT~Ige~G~~LSGGQkQRLaLARALL~ 1469 (1560)
++|+||||++.+|++||+|||+++.+..++++++++++.+++++++..+|+||+|.++++|.+|||||||||||||||++
T Consensus 92 ~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~ 171 (255)
T d2hyda1 92 NQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLN 171 (255)
T ss_dssp HTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHH
T ss_pred HEEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 41456510156899879999851586799999999999969799997362420103338889849999999999999855
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHHCCCHHHHHH
Q ss_conf 99789985788587999999999999983489659998269577862388999969979783598889952158299999
Q 000406 1470 GSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETLLASHLNGVYASL 1549 (1560)
Q Consensus 1470 ~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~TVIvIaHRlsti~~aDrIiVL~~G~Ive~Gt~~eLl~~~~~g~y~~l 1549 (1560)
+|+|||||||||+||+++++.|.+.|+++.+++|+|+||||++.+..||+|++|++|+|++.|+|+||++ +++.|++|
T Consensus 172 ~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~--~~~~y~~l 249 (255)
T d2hyda1 172 NPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIA--KQGAYEHL 249 (255)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHH--TTSHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHH--CCCHHHHH
T ss_conf 9989998376544797799999999998753888999968999998599999998999999889999986--88499999
Q ss_pred HHHHH
Q ss_conf 99964
Q 000406 1550 VRAET 1554 (1560)
Q Consensus 1550 ~~~q~ 1554 (1560)
|..|.
T Consensus 250 ~~~Q~ 254 (255)
T d2hyda1 250 YSIQN 254 (255)
T ss_dssp HTTTT
T ss_pred HHHCC
T ss_conf 99747
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=507.67 Aligned_cols=241 Identities=52% Similarity=0.779 Sum_probs=232.2
Q ss_pred CCCEEEEEEEEECCCCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHH
Q ss_conf 86289987899969999963001005999589399999599998889999996256898328999998557889888752
Q 000406 1311 PLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRK 1390 (1560)
Q Consensus 1311 ~~~I~~~nVsf~Y~~~~~~~vL~nIsl~I~~Ge~vaIVG~SGSGKSTLi~LL~gl~~p~~G~I~IdG~dI~~i~~~~lR~ 1390 (1560)
.+.|+|+||+|+|+.+ +.++|+||||+|++||++|||||||||||||+++|+|+++|++|+|.+||+|+++++.+.||+
T Consensus 11 ~g~I~~~nvsf~Y~~~-~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 89 (253)
T d3b60a1 11 TGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRN 89 (253)
T ss_dssp CCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHH
T ss_pred CEEEEEEEEEEEECCC-CCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHH
T ss_conf 3079999889992999-976353328998599999999999985999999986216888468987880121110665420
Q ss_pred CEEEECCCCCCCCCCHHHHHHCCCC-CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 3188827888997568999714999-999999999999992899998099983020028999779579999999999815
Q 000406 1391 QTALVGQEPALFAGTIRDNIALGNP-KASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILK 1469 (1560)
Q Consensus 1391 ~Ia~VpQd~~LF~gTIreNI~~g~~-~~sd~eI~~al~~a~l~d~I~~LP~GldT~Ige~G~~LSGGQkQRLaLARALL~ 1469 (1560)
+|+||||+|.+|++|+++|+.++.+ ..++++++++++.++++++|..+|+||+|.+++.|.+|||||||||||||||++
T Consensus 90 ~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~ 169 (253)
T d3b60a1 90 QVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLR 169 (253)
T ss_dssp TEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHH
T ss_pred EEEEEEECCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 68799502544786202433205722089999999999981799997355441014348889849999999999999954
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHHCCCHHHHHH
Q ss_conf 99789985788587999999999999983489659998269577862388999969979783598889952158299999
Q 000406 1470 GSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETLLASHLNGVYASL 1549 (1560)
Q Consensus 1470 ~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~TVIvIaHRlsti~~aDrIiVL~~G~Ive~Gt~~eLl~~~~~g~y~~l 1549 (1560)
+|+|||||||||+||+.+++.|++.|+++.+++|+|+||||++.++.||+|+||++|+|+|.|+|+||++ +++.|++|
T Consensus 170 ~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~--~~~~y~~l 247 (253)
T d3b60a1 170 DSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLA--QHGVYAQL 247 (253)
T ss_dssp CCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHH--HTSSHHHH
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHH--CCCHHHHH
T ss_conf 9988995164445898899999999987522788999988799998599999998999999889999986--89399999
Q ss_pred HHHHH
Q ss_conf 99964
Q 000406 1550 VRAET 1554 (1560)
Q Consensus 1550 ~~~q~ 1554 (1560)
|+.|.
T Consensus 248 ~~~Q~ 252 (253)
T d3b60a1 248 HKMQF 252 (253)
T ss_dssp HHHTC
T ss_pred HHHCC
T ss_conf 99725
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=499.10 Aligned_cols=240 Identities=40% Similarity=0.693 Sum_probs=228.7
Q ss_pred CCCEEEEEEEEECCCCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHH
Q ss_conf 86289987899969999963001005999589399999599998889999996256898328999998557889888752
Q 000406 1311 PLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRK 1390 (1560)
Q Consensus 1311 ~~~I~~~nVsf~Y~~~~~~~vL~nIsl~I~~Ge~vaIVG~SGSGKSTLi~LL~gl~~p~~G~I~IdG~dI~~i~~~~lR~ 1390 (1560)
.+.|+|+||+|+||+.++.++|+||||+|++||++|||||||||||||+++|+|+|+|++|+|++||+|+++++.+.+|+
T Consensus 9 ~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 88 (251)
T d1jj7a_ 9 EGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHR 88 (251)
T ss_dssp CCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred CCEEEEEEEEEECCCCCCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCHHHHHHHHH
T ss_conf 33699999899889999997674438998499899999999984999999986143787689988998531101378887
Q ss_pred CEEEECCCCCCCCCCHHHHHHCC-CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 31888278889975689997149-99999999999999992899998099983020028999779579999999999815
Q 000406 1391 QTALVGQEPALFAGTIRDNIALG-NPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILK 1469 (1560)
Q Consensus 1391 ~Ia~VpQd~~LF~gTIreNI~~g-~~~~sd~eI~~al~~a~l~d~I~~LP~GldT~Ige~G~~LSGGQkQRLaLARALL~ 1469 (1560)
+|+||||+|++|++||+||+.++ .+..+++++..+++.+++++++..+|.|+++.+++.|.+||||||||+||||||++
T Consensus 89 ~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal~~ 168 (251)
T d1jj7a_ 89 QVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIR 168 (251)
T ss_dssp HEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHHTT
T ss_pred HHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHCEEEEEEECCCC
T ss_conf 76540456500276346554542101302788999999998999998561211136751676689547048998604456
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHHCCCHHHH
Q ss_conf 9978998578858799999999999998348--96599982695778623889999699797835988899521582999
Q 000406 1470 GSRVLLLDEASSALDLESEKHVQDALRKVSK--RATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETLLASHLNGVYA 1547 (1560)
Q Consensus 1470 ~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~--~~TVIvIaHRlsti~~aDrIiVL~~G~Ive~Gt~~eLl~~~~~g~y~ 1547 (1560)
+|+|||||||||+||+.++..|++.|+++.+ ++|+|+||||++.++.||||+||++|+|+|.|+|+||++ ++|.|+
T Consensus 169 ~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~--~~~~y~ 246 (251)
T d1jj7a_ 169 KPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLME--KKGCYW 246 (251)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHH--HTSHHH
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHH--CCCHHH
T ss_conf 870787167576568536899999999976506989999959799998599999998999999889999985--975889
Q ss_pred HHHHH
Q ss_conf 99999
Q 000406 1548 SLVRA 1552 (1560)
Q Consensus 1548 ~l~~~ 1552 (1560)
+||++
T Consensus 247 ~l~~A 251 (251)
T d1jj7a_ 247 AMVQA 251 (251)
T ss_dssp HHHCC
T ss_pred HHHCC
T ss_conf 99629
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=499.59 Aligned_cols=238 Identities=38% Similarity=0.664 Sum_probs=228.7
Q ss_pred EEEEEEEEECCCCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCEE
Q ss_conf 89987899969999963001005999589399999599998889999996256898328999998557889888752318
Q 000406 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTA 1393 (1560)
Q Consensus 1314 I~~~nVsf~Y~~~~~~~vL~nIsl~I~~Ge~vaIVG~SGSGKSTLi~LL~gl~~p~~G~I~IdG~dI~~i~~~~lR~~Ia 1393 (1560)
|+++||+|+|++. +++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||+|+++++.+.+|++|+
T Consensus 2 le~knvsf~Y~~~--~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 79 (242)
T d1mv5a_ 2 LSARHVDFAYDDS--EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (242)
T ss_dssp EEEEEEEECSSSS--SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEECCCC--CCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCEEECCCCHHHHHHHEE
T ss_conf 7999889987999--84142258998599999999999997999999999960989877988998844246788874367
Q ss_pred EECCCCCCCCCCHHHHHHCC-CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 88278889975689997149-99999999999999992899998099983020028999779579999999999815997
Q 000406 1394 LVGQEPALFAGTIRDNIALG-NPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSR 1472 (1560)
Q Consensus 1394 ~VpQd~~LF~gTIreNI~~g-~~~~sd~eI~~al~~a~l~d~I~~LP~GldT~Ige~G~~LSGGQkQRLaLARALL~~p~ 1472 (1560)
||||+|.+|++||+||+.++ .+..++++++++++.+++.+++..+|.|++|.+++.|.+|||||||||||||||+++|+
T Consensus 80 ~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~ 159 (242)
T d1mv5a_ 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (242)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EECCCCCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 97566545785345430124455542356778999997555420374210152368789879999999999999852998
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHHCCCHHHHHHHHH
Q ss_conf 89985788587999999999999983489659998269577862388999969979783598889952158299999999
Q 000406 1473 VLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETLLASHLNGVYASLVRA 1552 (1560)
Q Consensus 1473 ILILDEaTSaLD~~tE~~I~~~L~~~~~~~TVIvIaHRlsti~~aDrIiVL~~G~Ive~Gt~~eLl~~~~~g~y~~l~~~ 1552 (1560)
|||||||||+||+.+++.|++.|+++.+++|+|+||||++.+..||+|+||++|+|++.|+|+||++ +++.|++||..
T Consensus 160 ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~--~~~~y~~l~~~ 237 (242)
T d1mv5a_ 160 ILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVA--THPLYAKYVSE 237 (242)
T ss_dssp EEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHH--HCHHHHHHHHC
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHH--CCHHHHHHHHH
T ss_conf 9996588655698899999887888717998999978799998499999998999999999999986--89699999999
Q ss_pred HHH
Q ss_conf 642
Q 000406 1553 ETE 1555 (1560)
Q Consensus 1553 q~~ 1555 (1560)
|..
T Consensus 238 Q~~ 240 (242)
T d1mv5a_ 238 QLT 240 (242)
T ss_dssp CCC
T ss_pred HHH
T ss_conf 850
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=479.19 Aligned_cols=242 Identities=51% Similarity=0.846 Sum_probs=233.3
Q ss_pred CCCCCEEEEEEEEECCCCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHH
Q ss_conf 88663999979999699998653222026742998999856999983799999962989996489999952678658877
Q 000406 668 SVSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWL 747 (1560)
Q Consensus 668 ~~~g~i~~~~vsf~y~~~~~~~vL~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~l 747 (1560)
...|.|+|+||+|+|+.. ..++|+||||+|++|+++||+|+||||||||+++|+|+++|++|+|.+||.|++.++..++
T Consensus 12 ~~~g~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~l 90 (255)
T d2hyda1 12 IKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSL 90 (255)
T ss_dssp CCSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHH
T ss_pred CCCCEEEEEEEEEEECCC-CCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCCHHHH
T ss_conf 778879999889995999-9760644389983998999988999809999999971278630001539987530788886
Q ss_pred HCCEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 35489990477576666899985499877899999999996018789709999874128999999968999999999861
Q 000406 748 RTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMI 827 (1560)
Q Consensus 748 r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~~~~~i~~lp~gl~t~ig~~g~~LSgGQkQrialARAll 827 (1560)
|++++||+|+|++|++||+|||.++.+..++++++++++.+++++++..+|+|++|.++++|.+||||||||+|||||++
T Consensus 91 r~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~ 170 (255)
T d2hyda1 91 RNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFL 170 (255)
T ss_dssp HHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHH
T ss_pred HHEEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 34145651015689987999985158679999999999996979999736242010333888984999999999999985
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEEEECCEEEEECCHHHHHHHCCHHHHHH
Q ss_conf 49987998277889999999999999998059967999845955001279899991985988527035753053279999
Q 000406 828 KDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLERGGAYHDLV 907 (1560)
Q Consensus 828 ~~~~iliLDE~ts~lD~~t~~~i~~~l~~~~~~~Tvi~itH~l~~i~~~D~I~vl~~G~i~e~G~~~~l~~~~~~~~~l~ 907 (1560)
++|+|||||||||+||++++..+.+.|+.+.+++|+|+||||++.+..||+|++|++|+|++.|+|+||+++++.|+++|
T Consensus 171 ~~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~~~~~y~~l~ 250 (255)
T d2hyda1 171 NNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHLY 250 (255)
T ss_dssp HCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHTTSHHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHHHHH
T ss_conf 59989998376544797799999999998753888999968999998599999998999999889999986884999999
Q ss_pred HHH
Q ss_conf 998
Q 000406 908 KLA 910 (1560)
Q Consensus 908 ~~~ 910 (1560)
+.|
T Consensus 251 ~~Q 253 (255)
T d2hyda1 251 SIQ 253 (255)
T ss_dssp TTT
T ss_pred HHC
T ss_conf 974
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=470.85 Aligned_cols=239 Identities=46% Similarity=0.796 Sum_probs=229.7
Q ss_pred CEEEEEEEEECCCCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCE
Q ss_conf 39999799996999986532220267429989998569999837999999629899964899999526786588773548
Q 000406 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQI 751 (1560)
Q Consensus 672 ~i~~~~vsf~y~~~~~~~vL~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 751 (1560)
+|+|+||+|+|+.. .+++|+||||+|++|+++||+|+||||||||+++|+|+++|++|+|.+||.|++.++..++|++|
T Consensus 1 eI~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i 79 (241)
T d2pmka1 1 DITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 79 (241)
T ss_dssp EEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred CEEEEEEEEEECCC-CCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEEECCCCHHHHHCEE
T ss_conf 92999999990899-96037424899849999999999999899999999735788888999999994400246553528
Q ss_pred EEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 99904775766668999854998778999999999960187897099998741289999999689999999998614998
Q 000406 752 GMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPR 831 (1560)
Q Consensus 752 ~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~~~~~i~~lp~gl~t~ig~~g~~LSgGQkQrialARAll~~~~ 831 (1560)
+||+|+|++|++||+|||.++.+..+++++..+++.+++++++..+|.|++|.++++|.+||||||||+|||||++++|+
T Consensus 80 ~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~ 159 (241)
T d2pmka1 80 GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPK 159 (241)
T ss_dssp EEECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCS
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 89824465578400035223575543888999999975578887632013443278788669889898754434441651
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEEEECCEEEEECCHHHHHHH-CCHHHHHHHHH
Q ss_conf 79982778899999999999999980599679998459550012798999919859885270357530-53279999998
Q 000406 832 ILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLER-GGAYHDLVKLA 910 (1560)
Q Consensus 832 iliLDE~ts~lD~~t~~~i~~~l~~~~~~~Tvi~itH~l~~i~~~D~I~vl~~G~i~e~G~~~~l~~~-~~~~~~l~~~~ 910 (1560)
|||||||||+||+.+++.+.+.++++.+++|+|+||||++.+..||+|+||++|+|+|.|+|++|+++ ++.|++|++.|
T Consensus 160 ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~~~~~y~~l~~~Q 239 (241)
T d2pmka1 160 ILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 239 (241)
T ss_dssp EEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHHHH
T ss_conf 35564776555989999999999998589989999788999984999999989999998899999829987899999981
Q ss_pred H
Q ss_conf 7
Q 000406 911 S 911 (1560)
Q Consensus 911 ~ 911 (1560)
.
T Consensus 240 ~ 240 (241)
T d2pmka1 240 S 240 (241)
T ss_dssp C
T ss_pred C
T ss_conf 3
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=469.53 Aligned_cols=244 Identities=46% Similarity=0.756 Sum_probs=232.6
Q ss_pred CCCCCCEEEEEEEEECCCCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHH
Q ss_conf 88866399997999969999865322202674299899985699998379999996298999648999995267865887
Q 000406 667 SSVSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKW 746 (1560)
Q Consensus 667 ~~~~g~i~~~~vsf~y~~~~~~~vL~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~ 746 (1560)
....|.|+|+||+|+|+.. +.++|+|+||+|++|+++||||+||||||||+++|+|+++|++|+|.+||.|++.++..+
T Consensus 8 ~~~~g~I~~~nvsf~Y~~~-~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~ 86 (253)
T d3b60a1 8 DRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLAS 86 (253)
T ss_dssp SCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHH
T ss_pred CCCCEEEEEEEEEEEECCC-CCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHH
T ss_conf 7783079999889992999-976353328998599999999999985999999986216888468987880121110665
Q ss_pred HHCCEEEEECCCCCCCCCHHHHHHCCCC-CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 7354899904775766668999854998-778999999999960187897099998741289999999689999999998
Q 000406 747 LRTQIGMVGQEPILFATSILENVLMGKE-NATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARA 825 (1560)
Q Consensus 747 lr~~i~~v~Q~~~lf~~ti~eNi~~~~~-~~~~~~i~~a~~~~~~~~~i~~lp~gl~t~ig~~g~~LSgGQkQrialARA 825 (1560)
+|++++||+|+|++|++|+++|+.++.+ ..+++++.++++.+++++++..+|+|++|.++++|.+||||||||||||||
T Consensus 87 ~r~~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARa 166 (253)
T d3b60a1 87 LRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARA 166 (253)
T ss_dssp HHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHH
T ss_pred HHHEEEEEEECCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf 42068799502544786202433205722089999999999981799997355441014348889849999999999999
Q ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEEEECCEEEEECCHHHHHHHCCHHHH
Q ss_conf 61499879982778899999999999999980599679998459550012798999919859885270357530532799
Q 000406 826 MIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLERGGAYHD 905 (1560)
Q Consensus 826 ll~~~~iliLDE~ts~lD~~t~~~i~~~l~~~~~~~Tvi~itH~l~~i~~~D~I~vl~~G~i~e~G~~~~l~~~~~~~~~ 905 (1560)
++++|+|||||||||+||+.++..+.+.|+++.+++|+|+||||++.+..||+|+||++|+|++.|+|+||+++++.|++
T Consensus 167 l~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~~~~~y~~ 246 (253)
T d3b60a1 167 LLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQ 246 (253)
T ss_dssp HHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHHTSSHHH
T ss_pred HHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHHH
T ss_conf 95499889951644458988999999999875227889999887999985999999989999998899999868939999
Q ss_pred HHHHHH
Q ss_conf 999987
Q 000406 906 LVKLAS 911 (1560)
Q Consensus 906 l~~~~~ 911 (1560)
||+.|.
T Consensus 247 l~~~Q~ 252 (253)
T d3b60a1 247 LHKMQF 252 (253)
T ss_dssp HHHHTC
T ss_pred HHHHCC
T ss_conf 999725
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=462.99 Aligned_cols=240 Identities=43% Similarity=0.752 Sum_probs=228.1
Q ss_pred CCCCEEEEEEEEECCCCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHH
Q ss_conf 86639999799996999986532220267429989998569999837999999629899964899999526786588773
Q 000406 669 VSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLR 748 (1560)
Q Consensus 669 ~~g~i~~~~vsf~y~~~~~~~vL~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr 748 (1560)
..|.|+|+||+|+|++.++.++|+|+||+|++||++||||+||||||||+++|+|+++|++|+|.+||.|++.++..++|
T Consensus 8 ~~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r 87 (251)
T d1jj7a_ 8 LEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLH 87 (251)
T ss_dssp CCCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHH
T ss_pred CCCEEEEEEEEEECCCCCCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCHHHHHHHH
T ss_conf 53369999989988999999767443899849989999999998499999998614378768998899853110137888
Q ss_pred CCEEEEECCCCCCCCCHHHHHHCCCC-CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 54899904775766668999854998-77899999999996018789709999874128999999968999999999861
Q 000406 749 TQIGMVGQEPILFATSILENVLMGKE-NATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMI 827 (1560)
Q Consensus 749 ~~i~~v~Q~~~lf~~ti~eNi~~~~~-~~~~~~i~~a~~~~~~~~~i~~lp~gl~t~ig~~g~~LSgGQkQrialARAll 827 (1560)
++++||+|+|++|++||+||+.++.. ....+++..+++.+++++++..+|.|+++.+++.|.+||||||||+|||||++
T Consensus 88 ~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal~ 167 (251)
T d1jj7a_ 88 RQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALI 167 (251)
T ss_dssp HHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHHT
T ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHCEEEEEEECCC
T ss_conf 77654045650027634655454210130278899999999899999856121113675167668954704899860445
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEECCCCCCCCCCEEEEEECCEEEEECCHHHHHHHCCHHHH
Q ss_conf 49987998277889999999999999998059--9679998459550012798999919859885270357530532799
Q 000406 828 KDPRILLLDEPTSALDSESESIVQQAIDKISV--GRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLERGGAYHD 905 (1560)
Q Consensus 828 ~~~~iliLDE~ts~lD~~t~~~i~~~l~~~~~--~~Tvi~itH~l~~i~~~D~I~vl~~G~i~e~G~~~~l~~~~~~~~~ 905 (1560)
++|+|+|||||||+||+.++..+.+.|+++.+ ++|+|+|||+++.+..||+|++|++|+|++.|+|+||+++++.|++
T Consensus 168 ~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~~~~~y~~ 247 (251)
T d1jj7a_ 168 RKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGCYWA 247 (251)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHTSHHHH
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHHH
T ss_conf 68707871675765685368999999999765069899999597999985999999989999998899999859758899
Q ss_pred HHH
Q ss_conf 999
Q 000406 906 LVK 908 (1560)
Q Consensus 906 l~~ 908 (1560)
|++
T Consensus 248 l~~ 250 (251)
T d1jj7a_ 248 MVQ 250 (251)
T ss_dssp HHC
T ss_pred HHC
T ss_conf 962
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=459.91 Aligned_cols=236 Identities=42% Similarity=0.708 Sum_probs=225.3
Q ss_pred EEEEEEEEECCCCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEE
Q ss_conf 99997999969999865322202674299899985699998379999996298999648999995267865887735489
Q 000406 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIG 752 (1560)
Q Consensus 673 i~~~~vsf~y~~~~~~~vL~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~ 752 (1560)
|+++||+|+|++. .++|+||||+|++|+++||+||||||||||+++|+|+++|++|+|.+||.|+++++.+.+|++|+
T Consensus 2 le~knvsf~Y~~~--~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 79 (242)
T d1mv5a_ 2 LSARHVDFAYDDS--EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (242)
T ss_dssp EEEEEEEECSSSS--SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEECCCC--CCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCEEECCCCHHHHHHHEE
T ss_conf 7999889987999--84142258998599999999999997999999999960989877988998844246788874367
Q ss_pred EEECCCCCCCCCHHHHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 990477576666899985499-8778999999999960187897099998741289999999689999999998614998
Q 000406 753 MVGQEPILFATSILENVLMGK-ENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPR 831 (1560)
Q Consensus 753 ~v~Q~~~lf~~ti~eNi~~~~-~~~~~~~i~~a~~~~~~~~~i~~lp~gl~t~ig~~g~~LSgGQkQrialARAll~~~~ 831 (1560)
||+|+|++|++||+||+.++. ...++++++.+++.+++.+++..+|+++++.++++|.+||||||||+|||||++++|+
T Consensus 80 ~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~ 159 (242)
T d1mv5a_ 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (242)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EECCCCCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 97566545785345430124455542356778999997555420374210152368789879999999999999852998
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEEEECCEEEEECCHHHHHHHCCHHHHHHHHH
Q ss_conf 7998277889999999999999998059967999845955001279899991985988527035753053279999998
Q 000406 832 ILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLERGGAYHDLVKLA 910 (1560)
Q Consensus 832 iliLDE~ts~lD~~t~~~i~~~l~~~~~~~Tvi~itH~l~~i~~~D~I~vl~~G~i~e~G~~~~l~~~~~~~~~l~~~~ 910 (1560)
|||||||||+||+.++..+.+.|+++.+++|+|+|||+++.+..||+|++|++|+|++.|+|+||++.++.|+++++.+
T Consensus 160 ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~~~~~y~~l~~~Q 238 (242)
T d1mv5a_ 160 ILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVSEQ 238 (242)
T ss_dssp EEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHHCHHHHHHHHCC
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCHHHHHHHHHH
T ss_conf 9996588655698899999887888717998999978799998499999998999999999999986896999999998
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=0 Score=418.02 Aligned_cols=223 Identities=27% Similarity=0.453 Sum_probs=202.1
Q ss_pred CCEEEEEEEEECCCCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHC
Q ss_conf 62899878999699999630010059995893999995999988899999962568983289999985578898887523
Q 000406 1312 LGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQ 1391 (1560)
Q Consensus 1312 ~~I~~~nVsf~Y~~~~~~~vL~nIsl~I~~Ge~vaIVG~SGSGKSTLi~LL~gl~~p~~G~I~IdG~dI~~i~~~~lR~~ 1391 (1560)
..|+|+|++|. ..|+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+|| +
T Consensus 37 ~~i~~~~~~~~-----g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g-------------~ 98 (281)
T d1r0wa_ 37 NNVSFSHLCLV-----GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------R 98 (281)
T ss_dssp ---CHHHHHHT-----TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS-------------C
T ss_pred CCEEEEECCCC-----CCEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC-------------E
T ss_conf 96799976989-----97677375999859999999989998299999999579747882899999-------------9
Q ss_pred EEEECCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 18882788899756899971499999999999999999289999809998302002899977957999999999981599
Q 000406 1392 TALVGQEPALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGS 1471 (1560)
Q Consensus 1392 Ia~VpQd~~LF~gTIreNI~~g~~~~sd~eI~~al~~a~l~d~I~~LP~GldT~Ige~G~~LSGGQkQRLaLARALL~~p 1471 (1560)
|+||||++.+|++||+|||.++. ..++.+++.+++.+.+.+++..+|+++++.+++.|.+||||||||++|||||+++|
T Consensus 99 i~~v~Q~~~l~~~tv~eni~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p 177 (281)
T d1r0wa_ 99 VSFCSQFSWIMPGTIKENIIFGV-SYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDA 177 (281)
T ss_dssp EEEECSSCCCCSEEHHHHHTTTS-CCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCCCEEECCCCCCC-CCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 99981643026760321420333-45605799999997769999846123323555542377999999999999998696
Q ss_pred CEEEEECCCCCCCHHHHHHHHHH-HHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHHCCCHHHHHHH
Q ss_conf 78998578858799999999999-99834896599982695778623889999699797835988899521582999999
Q 000406 1472 RVLLLDEASSALDLESEKHVQDA-LRKVSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETLLASHLNGVYASLV 1550 (1560)
Q Consensus 1472 ~ILILDEaTSaLD~~tE~~I~~~-L~~~~~~~TVIvIaHRlsti~~aDrIiVL~~G~Ive~Gt~~eLl~~~~~g~y~~l~ 1550 (1560)
+|||||||||+||+.+++.|.+. +....+++|+|+||||++.++.||||++|++|+|++.|+|+||++ .++.|.+.+
T Consensus 178 ~illLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~--~~~~~~~~~ 255 (281)
T d1r0wa_ 178 DLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQS--LRPDFSSKL 255 (281)
T ss_dssp SEEEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHH--HCHHHHHHH
T ss_pred CCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCEEEEEECCEEEEECCHHHHHC--CCCHHHHHH
T ss_conf 351333855448989999999999988628999999925289998599999998999999878999960--594899987
Q ss_pred HHHHH
Q ss_conf 99642
Q 000406 1551 RAETE 1555 (1560)
Q Consensus 1551 ~~q~~ 1555 (1560)
..+..
T Consensus 256 ~~~~~ 260 (281)
T d1r0wa_ 256 MGYDT 260 (281)
T ss_dssp HTSSS
T ss_pred CCCCC
T ss_conf 29830
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=1.8e-41 Score=368.51 Aligned_cols=223 Identities=29% Similarity=0.437 Sum_probs=189.8
Q ss_pred CCEEEEEEEEECCCCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHC
Q ss_conf 62899878999699999630010059995893999995999988899999962568983289999985578898887523
Q 000406 1312 LGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQ 1391 (1560)
Q Consensus 1312 ~~I~~~nVsf~Y~~~~~~~vL~nIsl~I~~Ge~vaIVG~SGSGKSTLi~LL~gl~~p~~G~I~IdG~dI~~i~~~~lR~~ 1391 (1560)
..|+++||+++|+ +..+|+||||+|++||.++|+||||||||||+++|.|+++|++|+|++||+|++..+.. |++
T Consensus 5 ~~I~v~nlsk~yg---~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~ 79 (239)
T d1v43a3 5 VEVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRN 79 (239)
T ss_dssp CCEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGT
T ss_pred CEEEEEEEEEEEC---CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCC--CCE
T ss_conf 7499987999999---99998130678879989999999998299999999758999878799916413547700--015
Q ss_pred EEEECCCCCCCC-CCHHHHHHCCCC--CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 188827888997-568999714999--99999999999999289999809998302002899977957999999999981
Q 000406 1392 TALVGQEPALFA-GTIRDNIALGNP--KASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAIL 1468 (1560)
Q Consensus 1392 Ia~VpQd~~LF~-gTIreNI~~g~~--~~sd~eI~~al~~a~l~d~I~~LP~GldT~Ige~G~~LSGGQkQRLaLARALL 1468 (1560)
|+||||++.||+ .|++||+.++.. ..+.+++.+.+ .+.++.+ |++.........||||||||++|||||+
T Consensus 80 ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LSGGq~QRvaiAraL~ 152 (239)
T d1v43a3 80 ISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRV-----RWAAELL--QIEELLNRYPAQLSGGQRQRVAVARAIV 152 (239)
T ss_dssp EEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHH-----HHHHHHT--TCGGGTTSCTTTCCSSCHHHHHHHHHHT
T ss_pred EEEEEECHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHH-----HHHHHHC--CCHHHHCCCHHHCCHHHHHHHHHHHHHC
T ss_conf 89980033534222099999999987399999999999-----9999875--9855660995469999988999976640
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEECCHHHHHH-CCEEEEEECCEEEEECCHHHHHHHCCCHH
Q ss_conf 59978998578858799999999999998348--9659998269577862-38899996997978359888995215829
Q 000406 1469 KGSRVLLLDEASSALDLESEKHVQDALRKVSK--RATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLASHLNGV 1545 (1560)
Q Consensus 1469 ~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~--~~TVIvIaHRlsti~~-aDrIiVL~~G~Ive~Gt~~eLl~~~~~g~ 1545 (1560)
.+|+|||||||||+||+.+...|++.|+++.+ ++|+|+|||++..+.. ||||++|++|+|++.|+++++.++ ....
T Consensus 153 ~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~-P~~~ 231 (239)
T d1v43a3 153 VEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR-PNSV 231 (239)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHC-CSBH
T ss_pred CCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHC-CCCH
T ss_conf 499824306886668989998999999999873198079994899999986999999989999998599999868-9998
Q ss_pred HH
Q ss_conf 99
Q 000406 1546 YA 1547 (1560)
Q Consensus 1546 y~ 1547 (1560)
|.
T Consensus 232 ~~ 233 (239)
T d1v43a3 232 FV 233 (239)
T ss_dssp HH
T ss_pred HH
T ss_conf 99
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.5e-43 Score=386.40 Aligned_cols=219 Identities=27% Similarity=0.457 Sum_probs=197.6
Q ss_pred CCCEEEEEEEEECCCCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHC
Q ss_conf 66399997999969999865322202674299899985699998379999996298999648999995267865887735
Q 000406 670 SGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRT 749 (1560)
Q Consensus 670 ~g~i~~~~vsf~y~~~~~~~vL~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~ 749 (1560)
...|.|++++|. +.++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|
T Consensus 36 ~~~i~~~~~~~~-----g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g------------- 97 (281)
T d1r0wa_ 36 ENNVSFSHLCLV-----GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG------------- 97 (281)
T ss_dssp ----CHHHHHHT-----TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS-------------
T ss_pred CCCEEEEECCCC-----CCEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC-------------
T ss_conf 896799976989-----97677375999859999999989998299999999579747882899999-------------
Q ss_pred CEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 48999047757666689998549987789999999999601878970999987412899999996899999999986149
Q 000406 750 QIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKD 829 (1560)
Q Consensus 750 ~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~~~~~i~~lp~gl~t~ig~~g~~LSgGQkQrialARAll~~ 829 (1560)
+++|++|++++|++||+|||.++.. ..+.+...+++.+.+..++..+|+++++.+++.|.+||||||||++|||||+++
T Consensus 98 ~i~~v~Q~~~l~~~tv~eni~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~ 176 (281)
T d1r0wa_ 98 RVSFCSQFSWIMPGTIKENIIFGVS-YDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKD 176 (281)
T ss_dssp CEEEECSSCCCCSEEHHHHHTTTSC-CCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCCCEEECCCCCCCC-CCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC
T ss_conf 9999816430267603214203334-560579999999776999984612332355554237799999999999999869
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHH-HHHHCCCCEEEEEECCCCCCCCCCEEEEEECCEEEEECCHHHHHHHCCHHHHHH
Q ss_conf 987998277889999999999999-998059967999845955001279899991985988527035753053279999
Q 000406 830 PRILLLDEPTSALDSESESIVQQA-IDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLERGGAYHDLV 907 (1560)
Q Consensus 830 ~~iliLDE~ts~lD~~t~~~i~~~-l~~~~~~~Tvi~itH~l~~i~~~D~I~vl~~G~i~e~G~~~~l~~~~~~~~~l~ 907 (1560)
|+|||||||||+||+.++..+.+. +....+++|+|+|||+++.+..||+|++|++|++++.|+|+||+.....|...+
T Consensus 177 p~illLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~~~~~~~~~~ 255 (281)
T d1r0wa_ 177 ADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKL 255 (281)
T ss_dssp CSEEEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHCHHHHHHH
T ss_pred CCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCEEEEEECCEEEEECCHHHHHCCCCHHHHHH
T ss_conf 6351333855448989999999999988628999999925289998599999998999999878999960594899987
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=2.2e-42 Score=376.26 Aligned_cols=215 Identities=28% Similarity=0.529 Sum_probs=187.5
Q ss_pred EEEEEEEEECCCCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCEE
Q ss_conf 89987899969999963001005999589399999599998889999996256898328999998557889888752318
Q 000406 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTA 1393 (1560)
Q Consensus 1314 I~~~nVsf~Y~~~~~~~vL~nIsl~I~~Ge~vaIVG~SGSGKSTLi~LL~gl~~p~~G~I~IdG~dI~~i~~~~lR~~Ia 1393 (1560)
|+++||+++|+. .+|+||||+|++||.+||+||||||||||+++|.|+.+|++|+|++||.|+++++.. |+.|+
T Consensus 2 i~v~nlsk~y~~----~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~--~r~ig 75 (229)
T d3d31a2 2 IEIESLSRKWKN----FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDIA 75 (229)
T ss_dssp EEEEEEEEECSS----CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHH--HHTCE
T ss_pred EEEEEEEEEECC----EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHH--HHCCE
T ss_conf 899989999499----788433789879989999989998299999999647688878899956734652165--74056
Q ss_pred EECCCCCCCCC-CHHHHHHCCC---CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 88278889975-6899971499---9999999999999992899998099983020028999779579999999999815
Q 000406 1394 LVGQEPALFAG-TIRDNIALGN---PKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILK 1469 (1560)
Q Consensus 1394 ~VpQd~~LF~g-TIreNI~~g~---~~~sd~eI~~al~~a~l~d~I~~LP~GldT~Ige~G~~LSGGQkQRLaLARALL~ 1469 (1560)
||||++.||+. ||+||+.++. .....+++.++++.+++.++.. .....||||||||++|||||+.
T Consensus 76 ~v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSGG~~QRvaiAraL~~ 144 (229)
T d3d31a2 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLD-----------RNPLTLSGGEQQRVALARALVT 144 (229)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTT-----------SCGGGSCHHHHHHHHHHHHTTS
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHH-----------CCHHHCCHHHHCCHHHHHHHHC
T ss_conf 15121111746657788888776405538999999999825655575-----------8955479998401403043443
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCHHHHHH-CCEEEEEECCEEEEECCHHHHHHHCCCHH
Q ss_conf 997899857885879999999999999834--89659998269577862-38899996997978359888995215829
Q 000406 1470 GSRVLLLDEASSALDLESEKHVQDALRKVS--KRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLASHLNGV 1545 (1560)
Q Consensus 1470 ~p~ILILDEaTSaLD~~tE~~I~~~L~~~~--~~~TVIvIaHRlsti~~-aDrIiVL~~G~Ive~Gt~~eLl~~~~~g~ 1545 (1560)
+|+|||||||||+||+.+...+++.|+++. .+.|+|+|||++..+.. ||||++|.+|+|++.|+++|++++..+..
T Consensus 145 ~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~P~~~~ 223 (229)
T d3d31a2 145 NPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGR 223 (229)
T ss_dssp CCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCCTTH
T ss_pred CCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHH
T ss_conf 6771443478767998999999999999986479689997499999999699999997999999869999986899879
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.8e-42 Score=375.41 Aligned_cols=217 Identities=28% Similarity=0.409 Sum_probs=189.0
Q ss_pred EEEEEEEEECCCCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCEE
Q ss_conf 89987899969999963001005999589399999599998889999996256898328999998557889888752318
Q 000406 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTA 1393 (1560)
Q Consensus 1314 I~~~nVsf~Y~~~~~~~vL~nIsl~I~~Ge~vaIVG~SGSGKSTLi~LL~gl~~p~~G~I~IdG~dI~~i~~~~lR~~Ia 1393 (1560)
|+++||+++|. +..+|+||||+|++||++||+||||||||||+++|.|+++|++|+|+++|.++.+.+. .|+.|+
T Consensus 1 Iev~nv~k~yg---~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~--~~r~ig 75 (232)
T d2awna2 1 VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPP--AERGVG 75 (232)
T ss_dssp EEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCG--GGTCEE
T ss_pred CEEEEEEEEEC---CEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCH--HHCEEE
T ss_conf 99999999989---9999811177886998999998999829999999965878888889999997788864--443222
Q ss_pred EECCCCCCCCC-CHHHHHHCCCCC--CC----HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 88278889975-689997149999--99----999999999992899998099983020028999779579999999999
Q 000406 1394 LVGQEPALFAG-TIRDNIALGNPK--AS----WAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARA 1466 (1560)
Q Consensus 1394 ~VpQd~~LF~g-TIreNI~~g~~~--~s----d~eI~~al~~a~l~d~I~~LP~GldT~Ige~G~~LSGGQkQRLaLARA 1466 (1560)
||||++.||+. |++||+.++... .+ ++.+.++++.+++.++....| ..||||||||++||||
T Consensus 76 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~-----------~~LSGGqkQRvaiAra 144 (232)
T d2awna2 76 MVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP-----------KALSGGQRQRVAIGRT 144 (232)
T ss_dssp EECSSCCC---------------------CHHHHHHHHHHHHC--------------------------------CHHHH
T ss_pred EECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCH-----------HHCCHHHHHHHHHHHH
T ss_conf 34334202643337889789998759988999999999997578865664896-----------5699999999999999
Q ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCHHHHHH-CCEEEEEECCEEEEECCHHHHHHHCCC
Q ss_conf 815997899857885879999999999999834--89659998269577862-388999969979783598889952158
Q 000406 1467 ILKGSRVLLLDEASSALDLESEKHVQDALRKVS--KRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLASHLN 1543 (1560)
Q Consensus 1467 LL~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~--~~~TVIvIaHRlsti~~-aDrIiVL~~G~Ive~Gt~~eLl~~~~~ 1543 (1560)
|+.+|++|+|||||++||+.+.+.|++.|+++. .+.|+|+|||++..+.. ||||++|++|+|++.|+++|++++ ..
T Consensus 145 L~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~-P~ 223 (232)
T d2awna2 145 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY-PA 223 (232)
T ss_dssp HHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS-CS
T ss_pred HHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHHC-CC
T ss_conf 70399889975888788988998999999999874298799994899999996999999979999998089999738-99
Q ss_pred HHHH
Q ss_conf 2999
Q 000406 1544 GVYA 1547 (1560)
Q Consensus 1544 g~y~ 1547 (1560)
..|.
T Consensus 224 ~~~v 227 (232)
T d2awna2 224 DRFV 227 (232)
T ss_dssp BHHH
T ss_pred CHHH
T ss_conf 9799
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=2.7e-42 Score=375.61 Aligned_cols=220 Identities=30% Similarity=0.460 Sum_probs=188.3
Q ss_pred CEEEEEEEEECCCCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHH----H
Q ss_conf 289987899969999963001005999589399999599998889999996256898328999998557889888----7
Q 000406 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKW----L 1388 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~~~~~vL~nIsl~I~~Ge~vaIVG~SGSGKSTLi~LL~gl~~p~~G~I~IdG~dI~~i~~~~----l 1388 (1560)
.|+++||+++|+ +..+|+||||+|++||.++|+||||||||||+++|.|+++|++|+|.++|.++...+... .
T Consensus 3 ~i~v~nl~k~yg---~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~ 79 (240)
T d1g2912 3 GVRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK 79 (240)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG
T ss_pred CEEEEEEEEEEC---CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEECCCCHHHHCCCC
T ss_conf 189986999989---99998560668869989999999998099999999648788989899999980356644424532
Q ss_pred HHCEEEECCCCCCCCC-CHHHHHHCCC--CCCCHHH----HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 5231888278889975-6899971499--9999999----9999999928999980999830200289997795799999
Q 000406 1389 RKQTALVGQEPALFAG-TIRDNIALGN--PKASWAE----IEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRI 1461 (1560)
Q Consensus 1389 R~~Ia~VpQd~~LF~g-TIreNI~~g~--~~~sd~e----I~~al~~a~l~d~I~~LP~GldT~Ige~G~~LSGGQkQRL 1461 (1560)
|+.|+||+|++.||+. ||+||+.++. ...+.++ +.++++.+++.++... ....||||||||+
T Consensus 80 ~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~-----------~p~~LSGGqkQRv 148 (240)
T d1g2912 80 DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNR-----------KPRELSGGQRQRV 148 (240)
T ss_dssp GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTC-----------CGGGSCHHHHHHH
T ss_pred CCCCEECCCCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCC-----------CHHHCCHHHHHHH
T ss_conf 25512002212223101166763306877299989999999999987599667629-----------9334999999999
Q ss_pred HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEECCHHHHHH-CCEEEEEECCEEEEECCHHHHH
Q ss_conf 999998159978998578858799999999999998348--9659998269577862-3889999699797835988899
Q 000406 1462 AIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSK--RATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLL 1538 (1560)
Q Consensus 1462 aLARALL~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~--~~TVIvIaHRlsti~~-aDrIiVL~~G~Ive~Gt~~eLl 1538 (1560)
+|||||+.+|+||||||||++||+.+...|++.|+++.+ +.|+|+|||+++.+.. ||||++|++|+|++.|+++|++
T Consensus 149 ~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~ 228 (240)
T d1g2912 149 ALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVY 228 (240)
T ss_dssp HHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHH
T ss_conf 99999826998898258876569899989999999998636988999959999999969999999899999985999998
Q ss_pred HHCCCHHHH
Q ss_conf 521582999
Q 000406 1539 ASHLNGVYA 1547 (1560)
Q Consensus 1539 ~~~~~g~y~ 1547 (1560)
.+ ....|-
T Consensus 229 ~~-P~~~~~ 236 (240)
T d1g2912 229 DK-PANTFV 236 (240)
T ss_dssp HS-CSBHHH
T ss_pred HC-CCCHHH
T ss_conf 28-999898
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=1.4e-41 Score=369.36 Aligned_cols=222 Identities=29% Similarity=0.390 Sum_probs=188.8
Q ss_pred CEEEEEEEEECCCCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCC---HHHHH
Q ss_conf 289987899969999963001005999589399999599998889999996256898328999998557889---88875
Q 000406 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREIN---VKWLR 1389 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~~~~~vL~nIsl~I~~Ge~vaIVG~SGSGKSTLi~LL~gl~~p~~G~I~IdG~dI~~i~---~~~lR 1389 (1560)
.|+++||++.|+.. +..+|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++...+ ...+|
T Consensus 3 ~i~v~nlsk~y~~g-~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~r 81 (242)
T d1oxxk2 3 RIIVKNVSKVFKKG-KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED 81 (242)
T ss_dssp CEEEEEEEEEEGGG-TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred EEEEEEEEEEECCC-CEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEECCCHHHCCHHH
T ss_conf 89997579998899-98998040789879989999989998099999999758688874599999995137311153120
Q ss_pred HCEEEECCCCCCCCC-CHHHHHHCCCC--CCCHHH----HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 231888278889975-68999714999--999999----99999999289999809998302002899977957999999
Q 000406 1390 KQTALVGQEPALFAG-TIRDNIALGNP--KASWAE----IEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIA 1462 (1560)
Q Consensus 1390 ~~Ia~VpQd~~LF~g-TIreNI~~g~~--~~sd~e----I~~al~~a~l~d~I~~LP~GldT~Ige~G~~LSGGQkQRLa 1462 (1560)
++|+||+|++.||+. ||+|||.++.. ..+.++ +.++++.+++.+ ........||||||||++
T Consensus 82 r~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~-----------~~~~~p~~LSGGqkQRva 150 (242)
T d1oxxk2 82 RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHH-----------VLNHFPRELSGAQQQRVA 150 (242)
T ss_dssp SCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGG-----------GTTSCGGGSCHHHHHHHH
T ss_pred CCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHH-----------HHHCCHHHCCHHHHHHHH
T ss_conf 451477304334666657777665567613799999999999986659176-----------664895459999985899
Q ss_pred HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEECCHHHHHH-CCEEEEEECCEEEEECCHHHHHH
Q ss_conf 99998159978998578858799999999999998348--9659998269577862-38899996997978359888995
Q 000406 1463 IARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSK--RATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLA 1539 (1560)
Q Consensus 1463 LARALL~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~--~~TVIvIaHRlsti~~-aDrIiVL~~G~Ive~Gt~~eLl~ 1539 (1560)
|||||..+|+||||||||++||+.+...|++.|+++.+ +.|+|+|||+++.+.. ||||++|++|+|++.|+|+|+.+
T Consensus 151 iARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~ 230 (242)
T d1oxxk2 151 LARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD 230 (242)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 87577604661454478667998998899899999986359879999799999999699999998999999869999986
Q ss_pred HCCCHHHH
Q ss_conf 21582999
Q 000406 1540 SHLNGVYA 1547 (1560)
Q Consensus 1540 ~~~~g~y~ 1547 (1560)
+ +...|.
T Consensus 231 ~-P~~~~~ 237 (242)
T d1oxxk2 231 N-PVSIQV 237 (242)
T ss_dssp S-CSSHHH
T ss_pred C-CCCHHH
T ss_conf 8-999799
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.5e-42 Score=373.65 Aligned_cols=216 Identities=27% Similarity=0.472 Sum_probs=187.2
Q ss_pred EEEEEEEEECCCCCC-CCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHH---HH
Q ss_conf 899878999699999-63001005999589399999599998889999996256898328999998557889888---75
Q 000406 1314 IELKMVTFTYPSRPE-VTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKW---LR 1389 (1560)
Q Consensus 1314 I~~~nVsf~Y~~~~~-~~vL~nIsl~I~~Ge~vaIVG~SGSGKSTLi~LL~gl~~p~~G~I~IdG~dI~~i~~~~---lR 1389 (1560)
|+++||++.|+.+.. ..+|+||||+|++||.+||+||||||||||+++|.|+.+|++|+|.++|.|+...+.++ +|
T Consensus 2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (240)
T d3dhwc1 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR 81 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEECCEEEEECCHHHHHHHH
T ss_conf 79982799969998148986150578869979999899989888999987588636677328867685208755511554
Q ss_pred HCEEEECCCCCCCCC-CHHHHHHCCC--CCCC----HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 231888278889975-6899971499--9999----99999999999289999809998302002899977957999999
Q 000406 1390 KQTALVGQEPALFAG-TIRDNIALGN--PKAS----WAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIA 1462 (1560)
Q Consensus 1390 ~~Ia~VpQd~~LF~g-TIreNI~~g~--~~~s----d~eI~~al~~a~l~d~I~~LP~GldT~Ige~G~~LSGGQkQRLa 1462 (1560)
++|+||||++.+|+. |++||+.++. ...+ .+.+.++++.+++.++. +.. ...|||||+||++
T Consensus 82 r~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~-------~~~----~~~LSGG~~QRva 150 (240)
T d3dhwc1 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKH-------DSY----PSNLSGGQKQRVA 150 (240)
T ss_dssp HHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTT-------SSC----BSCCCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHH-------HCC----HHHCCHHHHHHHH
T ss_conf 16643022522279964999999999984999899999999999976990355-------489----4349999998999
Q ss_pred HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEECCHHHHHH-CCEEEEEECCEEEEECCHHHHHH
Q ss_conf 99998159978998578858799999999999998348--9659998269577862-38899996997978359888995
Q 000406 1463 IARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSK--RATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLA 1539 (1560)
Q Consensus 1463 LARALL~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~--~~TVIvIaHRlsti~~-aDrIiVL~~G~Ive~Gt~~eLl~ 1539 (1560)
|||||+.+|++|||||||++||+.+...|++.|+++.+ +.|+|+|||++..+.. ||||++|++|+|+|.|+++|+++
T Consensus 151 iAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~~ 230 (240)
T d3dhwc1 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230 (240)
T ss_dssp HHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTTC
T ss_pred HHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 86401058986874465565898885679999999986469789998389999998699999997999999879999972
Q ss_pred H
Q ss_conf 2
Q 000406 1540 S 1540 (1560)
Q Consensus 1540 ~ 1540 (1560)
+
T Consensus 231 ~ 231 (240)
T d3dhwc1 231 H 231 (240)
T ss_dssp S
T ss_pred C
T ss_conf 8
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=4.1e-41 Score=365.39 Aligned_cols=227 Identities=26% Similarity=0.403 Sum_probs=189.3
Q ss_pred CEEEEEEEEECCCCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCC--------
Q ss_conf 289987899969999963001005999589399999599998889999996256898328999998557889--------
Q 000406 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREIN-------- 1384 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~~~~~vL~nIsl~I~~Ge~vaIVG~SGSGKSTLi~LL~gl~~p~~G~I~IdG~dI~~i~-------- 1384 (1560)
.|+++||+++|. +..+|+||||+|++||++||+|+||||||||+++|.|+++|++|+|++||.++...+
T Consensus 2 ~Lev~nl~k~yg---~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 78 (258)
T d1b0ua_ 2 KLHVIDLHKRYG---GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 78 (258)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred EEEEEEEEEEEC---CEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEEECCCCCCCHHCCC
T ss_conf 699997899989---99988150668869979999989998299999999747667899779999993367752000023
Q ss_pred -----HHHHHHCEEEECCCCCCCC-CCHHHHHHCC---CCCCCHHH----HHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf -----8887523188827888997-5689997149---99999999----999999992899998099983020028999
Q 000406 1385 -----VKWLRKQTALVGQEPALFA-GTIRDNIALG---NPKASWAE----IEEAAEEAYIHKFISSLPQGYETQVGESGV 1451 (1560)
Q Consensus 1385 -----~~~lR~~Ia~VpQd~~LF~-gTIreNI~~g---~~~~sd~e----I~~al~~a~l~d~I~~LP~GldT~Ige~G~ 1451 (1560)
...+|++|+||+|++.+|+ .|+.||+.++ ....+..+ +.++++.+++.+.... ....
T Consensus 79 ~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~p~ 148 (258)
T d1b0ua_ 79 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQG----------KYPV 148 (258)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHT----------SCGG
T ss_pred CCHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHC----------CCCC
T ss_conf 517679997454489983323141101021365657876299989999999999998299524430----------6822
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCHHHHHH-CCEEEEEECCEEE
Q ss_conf 779579999999999815997899857885879999999999999834-89659998269577862-3889999699797
Q 000406 1452 QLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVS-KRATTIVVAHRLSTIRE-ANMIAVVRDGAVV 1529 (1560)
Q Consensus 1452 ~LSGGQkQRLaLARALL~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~-~~~TVIvIaHRlsti~~-aDrIiVL~~G~Iv 1529 (1560)
.|||||+||++|||||..+|++|||||||++||+.+...|++.|+++. ++.|+|+|||++..+.. ||||+||.+|+|+
T Consensus 149 ~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv 228 (258)
T d1b0ua_ 149 HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 228 (258)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHCCEEEEEECCEEE
T ss_conf 05677888989999984399878852455568878888998765541036883389948999999869999999799999
Q ss_pred EECCHHHHHHHCCCHHHHHHHHH
Q ss_conf 83598889952158299999999
Q 000406 1530 EYGSHETLLASHLNGVYASLVRA 1552 (1560)
Q Consensus 1530 e~Gt~~eLl~~~~~g~y~~l~~~ 1552 (1560)
+.|+++|++++.++.+-.+++..
T Consensus 229 ~~g~~~ev~~~P~~~~~~~ll~~ 251 (258)
T d1b0ua_ 229 EEGDPEQVFGNPQSPRLQQFLKG 251 (258)
T ss_dssp EEECHHHHHHSCCSHHHHHHHHH
T ss_pred EECCHHHHHHCCCCHHHHHHHHC
T ss_conf 98499999838999999998818
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=2e-41 Score=368.10 Aligned_cols=214 Identities=32% Similarity=0.445 Sum_probs=176.8
Q ss_pred EEEEEEEEECCCCCC-CCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHH----
Q ss_conf 899878999699999-630010059995893999995999988899999962568983289999985578898887----
Q 000406 1314 IELKMVTFTYPSRPE-VTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWL---- 1388 (1560)
Q Consensus 1314 I~~~nVsf~Y~~~~~-~~vL~nIsl~I~~Ge~vaIVG~SGSGKSTLi~LL~gl~~p~~G~I~IdG~dI~~i~~~~l---- 1388 (1560)
|+++||++.|+.... ..+|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|++||.++..++.+++
T Consensus 2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (230)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCEEEECCEECCCCCHHHCCHHH
T ss_conf 89990799948998208987133778849979999889999821655750688777766269999985768855512312
Q ss_pred HHCEEEECCCCCCCC-CCHHHHHHCC-----CCCCCHHHHHH-HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 523188827888997-5689997149-----99999999999-9999928999980999830200289997795799999
Q 000406 1389 RKQTALVGQEPALFA-GTIRDNIALG-----NPKASWAEIEE-AAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRI 1461 (1560)
Q Consensus 1389 R~~Ia~VpQd~~LF~-gTIreNI~~g-----~~~~sd~eI~~-al~~a~l~d~I~~LP~GldT~Ige~G~~LSGGQkQRL 1461 (1560)
|++|+||+|++.||+ .||+||+.++ .+..+.++..+ +.+...+ ..+++. .....-.+||||||||+
T Consensus 82 ~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~L~~~---~~~~~p~~LSGGqkQRv 154 (230)
T d1l2ta_ 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKM----AELEER---FANHKPNQLSGGQQQRV 154 (230)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHH----TTCCGG---GTTCCGGGSCHHHHHHH
T ss_pred CCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH----HCHHHH---HHCCCHHHCCHHHHHHH
T ss_conf 55577880412417686688877578887224789999999999998876----242345---53488023899999999
Q ss_pred HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEECCHHHHHHCCEEEEEECCEEEEECCH
Q ss_conf 999998159978998578858799999999999998348--9659998269577862388999969979783598
Q 000406 1462 AIARAILKGSRVLLLDEASSALDLESEKHVQDALRKVSK--RATTIVVAHRLSTIREANMIAVVRDGAVVEYGSH 1534 (1560)
Q Consensus 1462 aLARALL~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~--~~TVIvIaHRlsti~~aDrIiVL~~G~Ive~Gt~ 1534 (1560)
+|||||..+|+|||||||||+||+.+...|++.|+++.+ ++|+|+|||+++.++.||||++|++|+|+++|++
T Consensus 155 aIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 155 AIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCC
T ss_conf 987565227888994687654698999999999999998439999998788899986998999989999995257
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=1.7e-39 Score=351.52 Aligned_cols=219 Identities=25% Similarity=0.415 Sum_probs=183.3
Q ss_pred CCEEEEEEEEECCCCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHH-
Q ss_conf 6289987899969999963001005999589399999599998889999996256898328999998557889888752-
Q 000406 1312 LGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRK- 1390 (1560)
Q Consensus 1312 ~~I~~~nVsf~Y~~~~~~~vL~nIsl~I~~Ge~vaIVG~SGSGKSTLi~LL~gl~~p~~G~I~IdG~dI~~i~~~~lR~- 1390 (1560)
.-|+++|+++.|+ +..+|+||||+|++||.+||+||||||||||+++|+|+++|++|+|.++|.|+...+.+..++
T Consensus 5 ~~Lev~~l~k~yg---~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~ 81 (240)
T d1ji0a_ 5 IVLEVQSLHVYYG---AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRM 81 (240)
T ss_dssp EEEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHT
T ss_pred EEEEEEEEEEEEC---CEEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHH
T ss_conf 0799961899989---9888830257888997999999999859999999967888880389842443446608888874
Q ss_pred CEEEECCCCCCCCC-CHHHHHHCCCC-CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 31888278889975-68999714999-99999999999999289999809998302002899977957999999999981
Q 000406 1391 QTALVGQEPALFAG-TIRDNIALGNP-KASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAIL 1468 (1560)
Q Consensus 1391 ~Ia~VpQd~~LF~g-TIreNI~~g~~-~~sd~eI~~al~~a~l~d~I~~LP~GldT~Ige~G~~LSGGQkQRLaLARALL 1468 (1560)
.|+|+||++.+|+. |++||+.++.. ....+++.+.++.+. +.. .++..........||||||||++|||||+
T Consensus 82 gi~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~--~~~----~~l~~~~~~~~~~LSGG~~Qrv~iAraL~ 155 (240)
T d1ji0a_ 82 GIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIF--SLF----PRLKERLKQLGGTLSGGEQQMLAIGRALM 155 (240)
T ss_dssp TEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHH--HHC----HHHHTTTTSBSSSSCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH--HHH----HCHHHHHHCCHHHCCHHHHHHHHHHHHHH
T ss_conf 235567655457763699999988873278889999999999--874----17688875854338999999999999998
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCHHHHHH-CCEEEEEECCEEEEECCHHHHHH
Q ss_conf 5997899857885879999999999999834-89659998269577862-38899996997978359888995
Q 000406 1469 KGSRVLLLDEASSALDLESEKHVQDALRKVS-KRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLA 1539 (1560)
Q Consensus 1469 ~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~-~~~TVIvIaHRlsti~~-aDrIiVL~~G~Ive~Gt~~eLl~ 1539 (1560)
.+|++|||||||++||+.+...|++.|+++. +++|+|+|+|+++.+.. ||||++|++|+|++.|+++|+++
T Consensus 156 ~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~ 228 (240)
T d1ji0a_ 156 SRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228 (240)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHT
T ss_pred HCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHC
T ss_conf 2998740039886799999999999999999689989999588999999699999998999999848999842
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.6e-39 Score=351.55 Aligned_cols=217 Identities=22% Similarity=0.350 Sum_probs=181.7
Q ss_pred CEEEEEEEEECCCCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHH-C
Q ss_conf 289987899969999963001005999589399999599998889999996256898328999998557889888752-3
Q 000406 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRK-Q 1391 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~~~~~vL~nIsl~I~~Ge~vaIVG~SGSGKSTLi~LL~gl~~p~~G~I~IdG~dI~~i~~~~lR~-~ 1391 (1560)
-|+++||+.+|+ ...+|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.++|.|++..+..++++ .
T Consensus 4 iL~v~nlsk~yg---~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~g 80 (254)
T d1g6ha_ 4 ILRTENIVKYFG---EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 80 (254)
T ss_dssp EEEEEEEEEEET---TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred EEEEEEEEEEEC---CEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCHHHHHHHHHC
T ss_conf 699977899979---96887121799889979999999998499999999779768873799999966405699999833
Q ss_pred EEEECCCCCCCC-CCHHHHHHCCCCC---------------CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCH
Q ss_conf 188827888997-5689997149999---------------999999999999928999980999830200289997795
Q 000406 1392 TALVGQEPALFA-GTIRDNIALGNPK---------------ASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSG 1455 (1560)
Q Consensus 1392 Ia~VpQd~~LF~-gTIreNI~~g~~~---------------~sd~eI~~al~~a~l~d~I~~LP~GldT~Ige~G~~LSG 1455 (1560)
|+++||++.+|. .|++||+.++... ..+++..+. +.+.++.+ |++........+|||
T Consensus 81 i~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSg 153 (254)
T d1g6ha_ 81 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEK-----AFKILEFL--KLSHLYDRKAGELSG 153 (254)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHH-----HHHHHHHT--TCGGGTTSBGGGSCH
T ss_pred CCCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHHH-----HHHHHHHC--CCCHHCCCCHHHCCC
T ss_conf 87257764247887423214301333034504566542135328999999-----99998761--963020595356991
Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEEECCHHHHHH-CCEEEEEECCEEEEECC
Q ss_conf 7999999999981599789985788587999999999999983-489659998269577862-38899996997978359
Q 000406 1456 GQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDALRKV-SKRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGS 1533 (1560)
Q Consensus 1456 GQkQRLaLARALL~~p~ILILDEaTSaLD~~tE~~I~~~L~~~-~~~~TVIvIaHRlsti~~-aDrIiVL~~G~Ive~Gt 1533 (1560)
|||||++|||||+.+|++|||||||++||+.+.+.|++.|+++ .+++|+|+|+|+++.+.. ||||+||++|+|++.|+
T Consensus 154 G~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~g~ 233 (254)
T d1g6ha_ 154 GQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGR 233 (254)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEEC
T ss_conf 88889999999975927232439765699999999999999999789989999476999998699999996998999966
Q ss_pred HHHHHH
Q ss_conf 888995
Q 000406 1534 HETLLA 1539 (1560)
Q Consensus 1534 ~~eLl~ 1539 (1560)
++|+.+
T Consensus 234 ~~e~~~ 239 (254)
T d1g6ha_ 234 GEEEIK 239 (254)
T ss_dssp SHHHHH
T ss_pred HHHHHH
T ss_conf 899865
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=6.5e-39 Score=346.41 Aligned_cols=219 Identities=25% Similarity=0.388 Sum_probs=186.5
Q ss_pred CCEEEEEEEEECCCCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHC
Q ss_conf 62899878999699999630010059995893999995999988899999962568983289999985578898887523
Q 000406 1312 LGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQ 1391 (1560)
Q Consensus 1312 ~~I~~~nVsf~Y~~~~~~~vL~nIsl~I~~Ge~vaIVG~SGSGKSTLi~LL~gl~~p~~G~I~IdG~dI~~i~~~~lR~~ 1391 (1560)
+.|+++|++.+|. ++++|+|+||+|++||.+||+||||||||||+++|+|+++|++|+|.++|.|+.+. ...+|+.
T Consensus 1 gaI~v~nl~k~yg---~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~-~~~~~~~ 76 (238)
T d1vpla_ 1 GAVVVKDLRKRIG---KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEE-PHEVRKL 76 (238)
T ss_dssp CCEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTC-HHHHHTT
T ss_pred CCEEEEEEEEEEC---CEEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCC-HHHHHHH
T ss_conf 9789995899999---99998062568848979999999999999999999669887888799986724468-3988721
Q ss_pred EEEECCCCCCCCC-CHHHHHHCCC--CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 1888278889975-6899971499--999999999999999289999809998302002899977957999999999981
Q 000406 1392 TALVGQEPALFAG-TIRDNIALGN--PKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAIL 1468 (1560)
Q Consensus 1392 Ia~VpQd~~LF~g-TIreNI~~g~--~~~sd~eI~~al~~a~l~d~I~~LP~GldT~Ige~G~~LSGGQkQRLaLARALL 1468 (1560)
++||||++.+|.. |++||+.+.. ...+..++.+.++.+ ++.+ +++.........||||||||++|||||+
T Consensus 77 i~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~-----l~~~--~l~~~~~~~~~~lSgG~~qrv~iA~al~ 149 (238)
T d1vpla_ 77 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERA-----TEIA--GLGEKIKDRVSTYSKGMVRKLLIARALM 149 (238)
T ss_dssp EEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHH-----HHHH--CCGGGGGSBGGGCCHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHH-----HHHC--CCHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 86750015468786677888989986179989999999999-----9867--9788885045337998989999999986
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCHHHHHH-CCEEEEEECCEEEEECCHHHHHHHC
Q ss_conf 5997899857885879999999999999834-89659998269577862-3889999699797835988899521
Q 000406 1469 KGSRVLLLDEASSALDLESEKHVQDALRKVS-KRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLASH 1541 (1560)
Q Consensus 1469 ~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~-~~~TVIvIaHRlsti~~-aDrIiVL~~G~Ive~Gt~~eLl~~~ 1541 (1560)
.+|+||||||||++||+.+.+.|++.|+++. +++|+|++||+++.+.. ||||++|++|+|++.|+++++.++.
T Consensus 150 ~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~~ 224 (238)
T d1vpla_ 150 VNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERY 224 (238)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHHT
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCC
T ss_conf 599988733798897989999999999999965998999959899999969999999899999992899998652
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=6.2e-39 Score=346.58 Aligned_cols=217 Identities=29% Similarity=0.446 Sum_probs=187.1
Q ss_pred CEEEEEEEEECCCCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCE
Q ss_conf 39999799996999986532220267429989998569999837999999629899964899999526786588773548
Q 000406 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQI 751 (1560)
Q Consensus 672 ~i~~~~vsf~y~~~~~~~vL~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 751 (1560)
.|+++|++++|+ +..+|+||||++++||+++|+||||||||||+++|.|+++|++|+|.++|.|+..++.. +++|
T Consensus 6 ~I~v~nlsk~yg---~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~i 80 (239)
T d1v43a3 6 EVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNI 80 (239)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTE
T ss_pred EEEEEEEEEEEC---CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCC--CCEE
T ss_conf 499987999999---99998130678879989999999998299999999758999878799916413547700--0158
Q ss_pred EEEECCCCCCC-CCHHHHHHCCCCC--CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 99904775766-6689998549987--78999999999960187897099998741289999999689999999998614
Q 000406 752 GMVGQEPILFA-TSILENVLMGKEN--ATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIK 828 (1560)
Q Consensus 752 ~~v~Q~~~lf~-~ti~eNi~~~~~~--~~~~~i~~a~~~~~~~~~i~~lp~gl~t~ig~~g~~LSgGQkQrialARAll~ 828 (1560)
+||+|++.+|+ .|++||+.++... .+.+++.+.+ .+.++.+ |++...+.....||||||||++|||||..
T Consensus 81 g~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LSGGq~QRvaiAraL~~ 153 (239)
T d1v43a3 81 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRV-----RWAAELL--QIEELLNRYPAQLSGGQRQRVAVARAIVV 153 (239)
T ss_dssp EEEEC------CCCHHHHHHTTCC--CCCHHHHHHHH-----HHHHHHT--TCGGGTTSCTTTCCSSCHHHHHHHHHHTT
T ss_pred EEEEECHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHH-----HHHHHHC--CCHHHHCCCHHHCCHHHHHHHHHHHHHCC
T ss_conf 9980033534222099999999987399999999999-----9999875--98556609954699999889999766404
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCCCCCCC-CCEEEEEECCEEEEECCHHHHHHHC
Q ss_conf 998799827788999999999999999805--99679998459550012-7989999198598852703575305
Q 000406 829 DPRILLLDEPTSALDSESESIVQQAIDKIS--VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLERG 900 (1560)
Q Consensus 829 ~~~iliLDE~ts~lD~~t~~~i~~~l~~~~--~~~Tvi~itH~l~~i~~-~D~I~vl~~G~i~e~G~~~~l~~~~ 900 (1560)
+|+|||||||||+||+.+...+.+.++++. .++|+|+|||+++.+.. ||+|++|++|+|++.|+++++..++
T Consensus 154 ~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P 228 (239)
T d1v43a3 154 EPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRP 228 (239)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCC
T ss_pred CCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCC
T ss_conf 998243068866689899989999999998731980799948999999869999999899999985999998689
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=4e-39 Score=348.24 Aligned_cols=211 Identities=29% Similarity=0.504 Sum_probs=184.3
Q ss_pred EEEEEEEEECCCCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEE
Q ss_conf 99997999969999865322202674299899985699998379999996298999648999995267865887735489
Q 000406 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIG 752 (1560)
Q Consensus 673 i~~~~vsf~y~~~~~~~vL~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~ 752 (1560)
|+++|++++|+. .+|+||||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.|+.+++.. |++++
T Consensus 2 i~v~nlsk~y~~----~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~--~r~ig 75 (229)
T d3d31a2 2 IEIESLSRKWKN----FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDIA 75 (229)
T ss_dssp EEEEEEEEECSS----CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHH--HHTCE
T ss_pred EEEEEEEEEECC----EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHH--HHCCE
T ss_conf 899989999499----788433789879989999989998299999999647688878899956734652165--74056
Q ss_pred EEECCCCCCCC-CHHHHHHCCCC---CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 99047757666-68999854998---778999999999960187897099998741289999999689999999998614
Q 000406 753 MVGQEPILFAT-SILENVLMGKE---NATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIK 828 (1560)
Q Consensus 753 ~v~Q~~~lf~~-ti~eNi~~~~~---~~~~~~i~~a~~~~~~~~~i~~lp~gl~t~ig~~g~~LSgGQkQrialARAll~ 828 (1560)
||+|++.+|+. ||+||+.++.. ....+++.++++..++ ..........||||||||++|||||+.
T Consensus 76 ~v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSGG~~QRvaiAraL~~ 144 (229)
T d3d31a2 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKI-----------EHLLDRNPLTLSGGEQQRVALARALVT 144 (229)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTC-----------TTTTTSCGGGSCHHHHHHHHHHHHTTS
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCC-----------HHHHHCCHHHCCHHHHCCHHHHHHHHC
T ss_conf 151211117466577888887764055389999999998256-----------555758955479998401403043443
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCCCCCCC-CCEEEEEECCEEEEECCHHHHHHHC
Q ss_conf 998799827788999999999999999805--99679998459550012-7989999198598852703575305
Q 000406 829 DPRILLLDEPTSALDSESESIVQQAIDKIS--VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLERG 900 (1560)
Q Consensus 829 ~~~iliLDE~ts~lD~~t~~~i~~~l~~~~--~~~Tvi~itH~l~~i~~-~D~I~vl~~G~i~e~G~~~~l~~~~ 900 (1560)
+|+||||||||++||+.+...+.+.++++. .+.|+|+|||++..+.. ||+|++|++|++++.|+++++++++
T Consensus 145 ~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~P 219 (229)
T d3d31a2 145 NPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKP 219 (229)
T ss_dssp CCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSC
T ss_pred CCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCC
T ss_conf 677144347876799899999999999998647968999749999999969999999799999986999998689
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=5e-38 Score=338.76 Aligned_cols=221 Identities=29% Similarity=0.460 Sum_probs=181.3
Q ss_pred EEEEEEEEECCCCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCEE
Q ss_conf 89987899969999963001005999589399999599998889999996256898328999998557889888752318
Q 000406 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTA 1393 (1560)
Q Consensus 1314 I~~~nVsf~Y~~~~~~~vL~nIsl~I~~Ge~vaIVG~SGSGKSTLi~LL~gl~~p~~G~I~IdG~dI~~i~~~~lR~~Ia 1393 (1560)
+++ ++..+|.+ ..+ ||||++. +|.++|+||||||||||+++|.|+++|++|+|.++|+|+..++.. |++|+
T Consensus 3 l~v-~~~k~~g~----~~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~--~r~ig 73 (240)
T d2onka1 3 LKV-RAEKRLGN----FRL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIG 73 (240)
T ss_dssp EEE-EEEEEETT----EEE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTT--TSCCB
T ss_pred EEE-EEEEEECC----EEE-EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHH--HCCCE
T ss_conf 999-99999899----999-9999749-979999979998099999999739998962899999998869989--92852
Q ss_pred EECCCCCCCC-CCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 8827888997-568999714999999999999999992899998099983020028999779579999999999815997
Q 000406 1394 LVGQEPALFA-GTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSR 1472 (1560)
Q Consensus 1394 ~VpQd~~LF~-gTIreNI~~g~~~~sd~eI~~al~~a~l~d~I~~LP~GldT~Ige~G~~LSGGQkQRLaLARALL~~p~ 1472 (1560)
||||++.||+ .||+|||.++....+..+..+. +.+.++.+ |+..........||||||||++|||||+.+|+
T Consensus 74 ~v~Q~~~l~~~ltV~enl~~~l~~~~~~~~~~~-----v~~~l~~~--gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~ 146 (240)
T d2onka1 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRR-----VREMAEKL--GIAHLLDRKPARLSGGERQRVALARALVIQPR 146 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHH-----HHHHHHTT--TCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred EECCCHHHCCCCHHHHHHHHHHCCCCHHHHHHH-----HHHHHHHC--CCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCC
T ss_conf 252314435220155766653233677889999-----99999863--83756657944489999899999877751677
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEECCHHHHHH-CCEEEEEECCEEEEECCHHHHHHHCCCHHHHHH
Q ss_conf 8998578858799999999999998348--9659998269577862-388999969979783598889952158299999
Q 000406 1473 VLLLDEASSALDLESEKHVQDALRKVSK--RATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLASHLNGVYASL 1549 (1560)
Q Consensus 1473 ILILDEaTSaLD~~tE~~I~~~L~~~~~--~~TVIvIaHRlsti~~-aDrIiVL~~G~Ive~Gt~~eLl~~~~~g~y~~l 1549 (1560)
||+||||||+||+.+...+++.|+++.+ +.|+|+|||++..+.. ||||++|++|+|++.|+++|+++. ++...+++
T Consensus 147 illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~-~~~~v~~f 225 (240)
T d2onka1 147 LLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSA-KNGEVAEF 225 (240)
T ss_dssp SBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS-CCSSHHHH
T ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHCC-CCHHHHHH
T ss_conf 06752865558879999999999999874397699981899999996999999989999999069998329-98899998
Q ss_pred HH
Q ss_conf 99
Q 000406 1550 VR 1551 (1560)
Q Consensus 1550 ~~ 1551 (1560)
+.
T Consensus 226 l~ 227 (240)
T d2onka1 226 LS 227 (240)
T ss_dssp GG
T ss_pred HC
T ss_conf 57
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.5e-39 Score=348.76 Aligned_cols=216 Identities=29% Similarity=0.492 Sum_probs=185.1
Q ss_pred EEEEEEEEECCCCCC-CCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHH---HH
Q ss_conf 999979999699998-65322202674299899985699998379999996298999648999995267865887---73
Q 000406 673 IEFKGVTFAYPSRPE-TVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKW---LR 748 (1560)
Q Consensus 673 i~~~~vsf~y~~~~~-~~vL~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~---lr 748 (1560)
|+++|++++|+.... ..+|+||||+|++||+++|+||||||||||+++|.|+.+|++|+|.++|.++..++... +|
T Consensus 2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (240)
T d3dhwc1 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR 81 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEECCEEEEECCHHHHHHHH
T ss_conf 79982799969998148986150578869979999899989888999987588636677328867685208755511554
Q ss_pred CCEEEEECCCCCCCC-CHHHHHHCCCC--CCC----HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 548999047757666-68999854998--778----99999999996018789709999874128999999968999999
Q 000406 749 TQIGMVGQEPILFAT-SILENVLMGKE--NAT----MKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIA 821 (1560)
Q Consensus 749 ~~i~~v~Q~~~lf~~-ti~eNi~~~~~--~~~----~~~i~~a~~~~~~~~~i~~lp~gl~t~ig~~g~~LSgGQkQria 821 (1560)
++++||+|++.+|+. |++||+.++.. ..+ .+++.+.++.+++.+ ........||||||||++
T Consensus 82 r~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~-----------~~~~~~~~LSGG~~QRva 150 (240)
T d3dhwc1 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGD-----------KHDSYPSNLSGGQKQRVA 150 (240)
T ss_dssp HHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTT-----------TTSSCBSCCCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCH-----------HHHCCHHHCCHHHHHHHH
T ss_conf 166430225222799649999999999849998999999999999769903-----------554894349999998999
Q ss_pred HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-C-CCEEEEEECCCCCCCC-CCEEEEEECCEEEEECCHHHHHH
Q ss_conf 9998614998799827788999999999999999805-9-9679998459550012-79899991985988527035753
Q 000406 822 LARAMIKDPRILLLDEPTSALDSESESIVQQAIDKIS-V-GRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLE 898 (1560)
Q Consensus 822 lARAll~~~~iliLDE~ts~lD~~t~~~i~~~l~~~~-~-~~Tvi~itH~l~~i~~-~D~I~vl~~G~i~e~G~~~~l~~ 898 (1560)
|||||..+|++|||||||++||+.+...+.+.|+++. + +.|+|+|||+++.+.. ||+|++|++|+|++.|+++++++
T Consensus 151 iAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~~ 230 (240)
T d3dhwc1 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230 (240)
T ss_dssp HHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTTC
T ss_pred HHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 86401058986874465565898885679999999986469789998389999998699999997999999879999972
Q ss_pred H
Q ss_conf 0
Q 000406 899 R 899 (1560)
Q Consensus 899 ~ 899 (1560)
.
T Consensus 231 ~ 231 (240)
T d3dhwc1 231 H 231 (240)
T ss_dssp S
T ss_pred C
T ss_conf 8
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=4.7e-39 Score=347.60 Aligned_cols=213 Identities=32% Similarity=0.467 Sum_probs=176.8
Q ss_pred EEEEEEEEECCCCCC-CCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHH----
Q ss_conf 999979999699998-653222026742998999856999983799999962989996489999952678658877----
Q 000406 673 IEFKGVTFAYPSRPE-TVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWL---- 747 (1560)
Q Consensus 673 i~~~~vsf~y~~~~~-~~vL~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~l---- 747 (1560)
|+++||+++|+.... ..+|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++..++...+
T Consensus 2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (230)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCEEEECCEECCCCCHHHCCHHH
T ss_conf 89990799948998208987133778849979999889999821655750688777766269999985768855512312
Q ss_pred HCCEEEEECCCCCCCC-CHHHHHHCCC-----CCCCHHHHH-HHHHHHHHHHHHHHCCCCCCC-CCCCCCCCCCHHHHHH
Q ss_conf 3548999047757666-6899985499-----877899999-999996018789709999874-1289999999689999
Q 000406 748 RTQIGMVGQEPILFAT-SILENVLMGK-----ENATMKEAV-AACKAASAHSFISELPLGYDT-QVGDRGTQLSGGQKQR 819 (1560)
Q Consensus 748 r~~i~~v~Q~~~lf~~-ti~eNi~~~~-----~~~~~~~i~-~a~~~~~~~~~i~~lp~gl~t-~ig~~g~~LSgGQkQr 819 (1560)
|++|+||+|+|.+|+. ||.||+.++. ...+.++.. .+.+ .+..+ |+.. .......+||||||||
T Consensus 82 ~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~------~l~~~--~L~~~~~~~~p~~LSGGqkQR 153 (230)
T d1l2ta_ 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALE------CLKMA--ELEERFANHKPNQLSGGQQQR 153 (230)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHH------HHHHT--TCCGGGTTCCGGGSCHHHHHH
T ss_pred CCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHH------HHHHH--CHHHHHHCCCHHHCCHHHHHH
T ss_conf 5557788041241768668887757888722478999999999999------88762--423455348802389999999
Q ss_pred HHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCCCCCCCCCEEEEEECCEEEEECCH
Q ss_conf 999998614998799827788999999999999999805--99679998459550012798999919859885270
Q 000406 820 IALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKIS--VGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNH 893 (1560)
Q Consensus 820 ialARAll~~~~iliLDE~ts~lD~~t~~~i~~~l~~~~--~~~Tvi~itH~l~~i~~~D~I~vl~~G~i~e~G~~ 893 (1560)
++|||||..+|+|||||||||+||+.+...+.+.+.++. .++|+|+|||+++.+..||+|++|++|+|++.|++
T Consensus 154 vaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 154 VAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCC
T ss_conf 9987565227888994687654698999999999999998439999998788899986998999989999995257
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.8e-39 Score=347.57 Aligned_cols=212 Identities=30% Similarity=0.473 Sum_probs=182.8
Q ss_pred EEEEEEEEECCCCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEE
Q ss_conf 99997999969999865322202674299899985699998379999996298999648999995267865887735489
Q 000406 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIG 752 (1560)
Q Consensus 673 i~~~~vsf~y~~~~~~~vL~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~ 752 (1560)
|+++||+++|+ +..+|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++..++.. +++|+
T Consensus 1 Iev~nv~k~yg---~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~ig 75 (232)
T d2awna2 1 VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVG 75 (232)
T ss_dssp EEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGG--GTCEE
T ss_pred CEEEEEEEEEC---CEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHH--HCEEE
T ss_conf 99999999989---99998111778869989999989998299999999658788888899999977888644--43222
Q ss_pred EEECCCCCCCC-CHHHHHHCCCCCC--C----HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 99047757666-6899985499877--8----999999999960187897099998741289999999689999999998
Q 000406 753 MVGQEPILFAT-SILENVLMGKENA--T----MKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARA 825 (1560)
Q Consensus 753 ~v~Q~~~lf~~-ti~eNi~~~~~~~--~----~~~i~~a~~~~~~~~~i~~lp~gl~t~ig~~g~~LSgGQkQrialARA 825 (1560)
||+|++.+|+. |++||+.++.... . .+++.+.++..++ .........+||||||||++||||
T Consensus 76 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l-----------~~~~~~~~~~LSGGqkQRvaiAra 144 (232)
T d2awna2 76 MVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQL-----------AHLLDRKPKALSGGQRQRVAIGRT 144 (232)
T ss_dssp EECSSCCC---------------------CHHHHHHHHHHHHC--------------------------------CHHHH
T ss_pred EECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC-----------HHHHHCCHHHCCHHHHHHHHHHHH
T ss_conf 343342026433378897899987599889999999999975788-----------656648965699999999999999
Q ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCCCCCCC-CCEEEEEECCEEEEECCHHHHHHHC
Q ss_conf 614998799827788999999999999999805--99679998459550012-7989999198598852703575305
Q 000406 826 MIKDPRILLLDEPTSALDSESESIVQQAIDKIS--VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLERG 900 (1560)
Q Consensus 826 ll~~~~iliLDE~ts~lD~~t~~~i~~~l~~~~--~~~Tvi~itH~l~~i~~-~D~I~vl~~G~i~e~G~~~~l~~~~ 900 (1560)
|+.+|++|+|||||++||+.+...+++.++++. .++|+|+|||+++.+.. ||+|++|++|++++.|+++++++.+
T Consensus 145 L~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P 222 (232)
T d2awna2 145 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYP 222 (232)
T ss_dssp HHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHHCC
T ss_conf 703998899758887889889989999999998742987999948999999969999999799999980899997389
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=7.8e-39 Score=345.72 Aligned_cols=215 Identities=23% Similarity=0.439 Sum_probs=184.7
Q ss_pred CEEEEEEEEECCCCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHH----H
Q ss_conf 399997999969999865322202674299899985699998379999996298999648999995267865887----7
Q 000406 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKW----L 747 (1560)
Q Consensus 672 ~i~~~~vsf~y~~~~~~~vL~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~----l 747 (1560)
.|+++||+++|+ +..+|+|+||++++||+++|+||||||||||+++|.|++.|++|+|.++|.++...+... .
T Consensus 3 ~i~v~nl~k~yg---~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~ 79 (240)
T d1g2912 3 GVRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK 79 (240)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG
T ss_pred CEEEEEEEEEEC---CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEECCCCHHHHCCCC
T ss_conf 189986999989---99998560668869989999999998099999999648788989899999980356644424532
Q ss_pred HCCEEEEECCCCCCCC-CHHHHHHCCCC--CCCHH----HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 3548999047757666-68999854998--77899----99999999601878970999987412899999996899999
Q 000406 748 RTQIGMVGQEPILFAT-SILENVLMGKE--NATMK----EAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRI 820 (1560)
Q Consensus 748 r~~i~~v~Q~~~lf~~-ti~eNi~~~~~--~~~~~----~i~~a~~~~~~~~~i~~lp~gl~t~ig~~g~~LSgGQkQri 820 (1560)
|++|+||+|+|.+|+. ||.||+.++.. ..+.+ .+.+.++.+++.++ .......||||||||+
T Consensus 80 ~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~-----------~~~~p~~LSGGqkQRv 148 (240)
T d1g2912 80 DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTEL-----------LNRKPRELSGGQRQRV 148 (240)
T ss_dssp GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGG-----------TTCCGGGSCHHHHHHH
T ss_pred CCCCEECCCCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHH-----------HCCCHHHCCHHHHHHH
T ss_conf 25512002212223101166763306877299989999999999987599667-----------6299334999999999
Q ss_pred HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-C-CCEEEEEECCCCCCCC-CCEEEEEECCEEEEECCHHHHH
Q ss_conf 99998614998799827788999999999999999805-9-9679998459550012-7989999198598852703575
Q 000406 821 ALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKIS-V-GRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLL 897 (1560)
Q Consensus 821 alARAll~~~~iliLDE~ts~lD~~t~~~i~~~l~~~~-~-~~Tvi~itH~l~~i~~-~D~I~vl~~G~i~e~G~~~~l~ 897 (1560)
+|||||..+|+||||||||++||+.+...+.+.|+++. + +.|+|+|||+++.+.. ||+|++|++|++++.|+++|++
T Consensus 149 ~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~ 228 (240)
T d1g2912 149 ALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVY 228 (240)
T ss_dssp HHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHH
T ss_conf 99999826998898258876569899989999999998636988999959999999969999999899999985999998
Q ss_pred HHC
Q ss_conf 305
Q 000406 898 ERG 900 (1560)
Q Consensus 898 ~~~ 900 (1560)
.++
T Consensus 229 ~~P 231 (240)
T d1g2912 229 DKP 231 (240)
T ss_dssp HSC
T ss_pred HCC
T ss_conf 289
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=5.1e-39 Score=347.30 Aligned_cols=217 Identities=30% Similarity=0.456 Sum_probs=185.6
Q ss_pred CEEEEEEEEECCCCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCC---HHHHH
Q ss_conf 399997999969999865322202674299899985699998379999996298999648999995267865---88773
Q 000406 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQ---VKWLR 748 (1560)
Q Consensus 672 ~i~~~~vsf~y~~~~~~~vL~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~---~~~lr 748 (1560)
.|+++||+++|+.. ...+|+||||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+ ....|
T Consensus 3 ~i~v~nlsk~y~~g-~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~r 81 (242)
T d1oxxk2 3 RIIVKNVSKVFKKG-KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED 81 (242)
T ss_dssp CEEEEEEEEEEGGG-TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred EEEEEEEEEEECCC-CEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEECCCHHHCCHHH
T ss_conf 89997579998899-98998040789879989999989998099999999758688874599999995137311153120
Q ss_pred CCEEEEECCCCCCCC-CHHHHHHCCCCC--CCHHH----HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 548999047757666-689998549987--78999----99999996018789709999874128999999968999999
Q 000406 749 TQIGMVGQEPILFAT-SILENVLMGKEN--ATMKE----AVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIA 821 (1560)
Q Consensus 749 ~~i~~v~Q~~~lf~~-ti~eNi~~~~~~--~~~~~----i~~a~~~~~~~~~i~~lp~gl~t~ig~~g~~LSgGQkQria 821 (1560)
++++||+|++.||+. |+.|||.++... .+.++ +.+.++.+ |++........+||||||||++
T Consensus 82 r~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~-----------gL~~~~~~~p~~LSGGqkQRva 150 (242)
T d1oxxk2 82 RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKIL-----------DIHHVLNHFPRELSGAQQQRVA 150 (242)
T ss_dssp SCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHT-----------TCGGGTTSCGGGSCHHHHHHHH
T ss_pred CCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----------CHHHHHHCCHHHCCHHHHHHHH
T ss_conf 45147730433466665777766556761379999999999998665-----------9176664895459999985899
Q ss_pred HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCCCCCCC-CCEEEEEECCEEEEECCHHHHHH
Q ss_conf 9998614998799827788999999999999999805--99679998459550012-79899991985988527035753
Q 000406 822 LARAMIKDPRILLLDEPTSALDSESESIVQQAIDKIS--VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLE 898 (1560)
Q Consensus 822 lARAll~~~~iliLDE~ts~lD~~t~~~i~~~l~~~~--~~~Tvi~itH~l~~i~~-~D~I~vl~~G~i~e~G~~~~l~~ 898 (1560)
|||||..+|+||||||||++||+.+...+.+.|+++. .+.|+|+|||+++.+.. ||+|++|++|+|++.|+++++..
T Consensus 151 iARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~ 230 (242)
T d1oxxk2 151 LARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD 230 (242)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 87577604661454478667998998899899999986359879999799999999699999998999999869999986
Q ss_pred HC
Q ss_conf 05
Q 000406 899 RG 900 (1560)
Q Consensus 899 ~~ 900 (1560)
.+
T Consensus 231 ~P 232 (242)
T d1oxxk2 231 NP 232 (242)
T ss_dssp SC
T ss_pred CC
T ss_conf 89
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=3.1e-37 Score=331.94 Aligned_cols=217 Identities=22% Similarity=0.383 Sum_probs=183.0
Q ss_pred CEEEEEEEEECCCCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHH-CC
Q ss_conf 39999799996999986532220267429989998569999837999999629899964899999526786588773-54
Q 000406 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLR-TQ 750 (1560)
Q Consensus 672 ~i~~~~vsf~y~~~~~~~vL~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr-~~ 750 (1560)
-++++|++++|+ +..+|+||||++++||.++|+||||||||||+++|.|+++|++|+|.++|.|+...++...+ ..
T Consensus 4 iL~v~nlsk~yg---~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~g 80 (254)
T d1g6ha_ 4 ILRTENIVKYFG---EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 80 (254)
T ss_dssp EEEEEEEEEEET---TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred EEEEEEEEEEEC---CEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCHHHHHHHHHC
T ss_conf 699977899979---96887121799889979999999998499999999779768873799999966405699999833
Q ss_pred EEEEECCCCCCCC-CHHHHHHCCCCC---------------CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCH
Q ss_conf 8999047757666-689998549987---------------789999999999601878970999987412899999996
Q 000406 751 IGMVGQEPILFAT-SILENVLMGKEN---------------ATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSG 814 (1560)
Q Consensus 751 i~~v~Q~~~lf~~-ti~eNi~~~~~~---------------~~~~~i~~a~~~~~~~~~i~~lp~gl~t~ig~~g~~LSg 814 (1560)
|+++||+|.+|+. |+.||+.++... ...++..+ .+.+.++.+ +++........+|||
T Consensus 81 i~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSg 153 (254)
T d1g6ha_ 81 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVE-----KAFKILEFL--KLSHLYDRKAGELSG 153 (254)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHH-----HHHHHHHHT--TCGGGTTSBGGGSCH
T ss_pred CCCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHH-----HHHHHHHHC--CCCHHCCCCHHHCCC
T ss_conf 8725776424788742321430133303450456654213532899999-----999998761--963020595356991
Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEEECCCCCCCC-CCEEEEEECCEEEEECC
Q ss_conf 8999999999861499879982778899999999999999980-599679998459550012-79899991985988527
Q 000406 815 GQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKI-SVGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGN 892 (1560)
Q Consensus 815 GQkQrialARAll~~~~iliLDE~ts~lD~~t~~~i~~~l~~~-~~~~Tvi~itH~l~~i~~-~D~I~vl~~G~i~e~G~ 892 (1560)
|||||++||||+..+|++|||||||++||+.+...+.+.|+++ .+|+|+|+|+|+++.+.. ||+|++|++|++++.|+
T Consensus 154 G~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~g~ 233 (254)
T d1g6ha_ 154 GQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGR 233 (254)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEEC
T ss_conf 88889999999975927232439765699999999999999999789989999476999998699999996998999966
Q ss_pred HHHHHH
Q ss_conf 035753
Q 000406 893 HRQLLE 898 (1560)
Q Consensus 893 ~~~l~~ 898 (1560)
++|+.+
T Consensus 234 ~~e~~~ 239 (254)
T d1g6ha_ 234 GEEEIK 239 (254)
T ss_dssp SHHHHH
T ss_pred HHHHHH
T ss_conf 899865
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.6e-37 Score=334.39 Aligned_cols=216 Identities=29% Similarity=0.493 Sum_probs=182.0
Q ss_pred CEEEEEEEEECCCCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCH-------
Q ss_conf 3999979999699998653222026742998999856999983799999962989996489999952678658-------
Q 000406 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQV------- 744 (1560)
Q Consensus 672 ~i~~~~vsf~y~~~~~~~vL~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~------- 744 (1560)
.|+++|++++|+ +..+|+||||+|++||+++|+|+||||||||+++|.|+++|++|+|.++|.++...+.
T Consensus 2 ~Lev~nl~k~yg---~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 78 (258)
T d1b0ua_ 2 KLHVIDLHKRYG---GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 78 (258)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred EEEEEEEEEEEC---CEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEEECCCCCCCHHCCC
T ss_conf 699997899989---99988150668869979999989998299999999747667899779999993367752000023
Q ss_pred ------HHHHCCEEEEECCCCCCCC-CHHHHHHCCC---CCCCHH----HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf ------8773548999047757666-6899985499---877899----9999999960187897099998741289999
Q 000406 745 ------KWLRTQIGMVGQEPILFAT-SILENVLMGK---ENATMK----EAVAACKAASAHSFISELPLGYDTQVGDRGT 810 (1560)
Q Consensus 745 ------~~lr~~i~~v~Q~~~lf~~-ti~eNi~~~~---~~~~~~----~i~~a~~~~~~~~~i~~lp~gl~t~ig~~g~ 810 (1560)
..+|++++||+|+|.+|+. |+.||+.++. .....+ .+.++++.+++.+.. ......
T Consensus 79 ~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~p~ 148 (258)
T d1b0ua_ 79 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERA----------QGKYPV 148 (258)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHH----------HTSCGG
T ss_pred CCHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHH----------HCCCCC
T ss_conf 5176799974544899833231411010213656578762999899999999999982995244----------306822
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCCCCCCC-CCEEEEEECCEEE
Q ss_conf 999689999999998614998799827788999999999999999805-99679998459550012-7989999198598
Q 000406 811 QLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKIS-VGRTTIVIAHRLATVKN-ANTIVVLDQGSVV 888 (1560)
Q Consensus 811 ~LSgGQkQrialARAll~~~~iliLDE~ts~lD~~t~~~i~~~l~~~~-~~~Tvi~itH~l~~i~~-~D~I~vl~~G~i~ 888 (1560)
+|||||+||++|||||..+|++|||||||++||+.+...+.+.|+++. +++|+|+|||++..+.. ||||+||.+|+|+
T Consensus 149 ~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv 228 (258)
T d1b0ua_ 149 HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 228 (258)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHCCEEEEEECCEEE
T ss_conf 05677888989999984399878852455568878888998765541036883389948999999869999999799999
Q ss_pred EECCHHHHHHHC
Q ss_conf 852703575305
Q 000406 889 EIGNHRQLLERG 900 (1560)
Q Consensus 889 e~G~~~~l~~~~ 900 (1560)
+.|++++++..+
T Consensus 229 ~~g~~~ev~~~P 240 (258)
T d1b0ua_ 229 EEGDPEQVFGNP 240 (258)
T ss_dssp EEECHHHHHHSC
T ss_pred EECCHHHHHHCC
T ss_conf 984999998389
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=3.3e-37 Score=331.75 Aligned_cols=219 Identities=26% Similarity=0.445 Sum_probs=181.7
Q ss_pred CEEEEEEEEECCCCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHH-HCC
Q ss_conf 3999979999699998653222026742998999856999983799999962989996489999952678658877-354
Q 000406 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWL-RTQ 750 (1560)
Q Consensus 672 ~i~~~~vsf~y~~~~~~~vL~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~l-r~~ 750 (1560)
-|+++|++++|+ +..+|+||||++++||+++|+||||||||||+++|.|+++|++|+|.++|.|+...+.... |..
T Consensus 6 ~Lev~~l~k~yg---~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~g 82 (240)
T d1ji0a_ 6 VLEVQSLHVYYG---AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred EEEEEEEEEEEC---CEEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHC
T ss_conf 799961899989---98888302578889979999999998599999999678888803898424434466088888742
Q ss_pred EEEEECCCCCCCC-CHHHHHHCCCCCC-CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 8999047757666-6899985499877-8999999999960187897099998741289999999689999999998614
Q 000406 751 IGMVGQEPILFAT-SILENVLMGKENA-TMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIK 828 (1560)
Q Consensus 751 i~~v~Q~~~lf~~-ti~eNi~~~~~~~-~~~~i~~a~~~~~~~~~i~~lp~gl~t~ig~~g~~LSgGQkQrialARAll~ 828 (1560)
++|+||++.+|+. |++||+.++.... ..+...+....+ ...+ .++.........+||||||||++||||+..
T Consensus 83 i~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~l~~~~~~~~~~LSGG~~Qrv~iAraL~~ 156 (240)
T d1ji0a_ 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWI-----FSLF-PRLKERLKQLGGTLSGGEQQMLAIGRALMS 156 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHH-----HHHC-HHHHTTTTSBSSSSCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHH-----HHHH-HCHHHHHHCCHHHCCHHHHHHHHHHHHHHH
T ss_conf 3556765545776369999998887327888999999999-----9874-176888758543389999999999999982
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCCCCCCC-CCEEEEEECCEEEEECCHHHHHHH
Q ss_conf 998799827788999999999999999805-99679998459550012-798999919859885270357530
Q 000406 829 DPRILLLDEPTSALDSESESIVQQAIDKIS-VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLER 899 (1560)
Q Consensus 829 ~~~iliLDE~ts~lD~~t~~~i~~~l~~~~-~~~Tvi~itH~l~~i~~-~D~I~vl~~G~i~e~G~~~~l~~~ 899 (1560)
+|++|||||||++||+.+...+.+.|+++. +|+|+|+++|+++.+.. ||+|++|++|++++.|+++++++.
T Consensus 157 ~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 229 (240)
T d1ji0a_ 157 RPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCC
T ss_conf 9987400398867999999999999999996899899995889999996999999989999998489998429
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.7e-36 Score=325.63 Aligned_cols=218 Identities=25% Similarity=0.425 Sum_probs=185.6
Q ss_pred CCEEEEEEEEECCCCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCC
Q ss_conf 63999979999699998653222026742998999856999983799999962989996489999952678658877354
Q 000406 671 GKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQ 750 (1560)
Q Consensus 671 g~i~~~~vsf~y~~~~~~~vL~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~ 750 (1560)
|.|+++|++++|+ +..+|+|+||++++||.++|+||||||||||+++|.|++.|++|+|.++|.|+.+. ...+|+.
T Consensus 1 gaI~v~nl~k~yg---~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~-~~~~~~~ 76 (238)
T d1vpla_ 1 GAVVVKDLRKRIG---KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEE-PHEVRKL 76 (238)
T ss_dssp CCEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTC-HHHHHTT
T ss_pred CCEEEEEEEEEEC---CEEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCC-HHHHHHH
T ss_conf 9789995899999---99998062568848979999999999999999999669887888799986724468-3988721
Q ss_pred EEEEECCCCCCCC-CHHHHHHCCCC--CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 8999047757666-68999854998--77899999999996018789709999874128999999968999999999861
Q 000406 751 IGMVGQEPILFAT-SILENVLMGKE--NATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMI 827 (1560)
Q Consensus 751 i~~v~Q~~~lf~~-ti~eNi~~~~~--~~~~~~i~~a~~~~~~~~~i~~lp~gl~t~ig~~g~~LSgGQkQrialARAll 827 (1560)
++||||++.+|.. |++||+.+... .....++.+..+.. ++.+ +++........+||||||||++||||++
T Consensus 77 i~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~-----l~~~--~l~~~~~~~~~~lSgG~~qrv~iA~al~ 149 (238)
T d1vpla_ 77 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERA-----TEIA--GLGEKIKDRVSTYSKGMVRKLLIARALM 149 (238)
T ss_dssp EEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHH-----HHHH--CCGGGGGSBGGGCCHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHH-----HHHC--CCHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 86750015468786677888989986179989999999999-----9867--9788885045337998989999999986
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCCCCCCC-CCEEEEEECCEEEEECCHHHHHHH
Q ss_conf 4998799827788999999999999999805-99679998459550012-798999919859885270357530
Q 000406 828 KDPRILLLDEPTSALDSESESIVQQAIDKIS-VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLER 899 (1560)
Q Consensus 828 ~~~~iliLDE~ts~lD~~t~~~i~~~l~~~~-~~~Tvi~itH~l~~i~~-~D~I~vl~~G~i~e~G~~~~l~~~ 899 (1560)
.+|+||||||||++||+.+...+++.++++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++..+
T Consensus 150 ~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 223 (238)
T d1vpla_ 150 VNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER 223 (238)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHC
T ss_conf 59998873379889798999999999999996599899995989999996999999989999999289999865
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=1.5e-35 Score=317.32 Aligned_cols=211 Identities=28% Similarity=0.490 Sum_probs=177.9
Q ss_pred EEEEEEEEECCCCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEE
Q ss_conf 99997999969999865322202674299899985699998379999996298999648999995267865887735489
Q 000406 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIG 752 (1560)
Q Consensus 673 i~~~~vsf~y~~~~~~~vL~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~ 752 (1560)
+++ ++..+|+. . .+ |+||++. +++++|+||||||||||+++|.|+++|++|+|.++|.|+..++.. |++|+
T Consensus 3 l~v-~~~k~~g~---~-~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~--~r~ig 73 (240)
T d2onka1 3 LKV-RAEKRLGN---F-RL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIG 73 (240)
T ss_dssp EEE-EEEEEETT---E-EE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTT--TSCCB
T ss_pred EEE-EEEEEECC---E-EE-EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHH--HCCCE
T ss_conf 999-99999899---9-99-9999749-979999979998099999999739998962899999998869989--92852
Q ss_pred EEECCCCCCCC-CHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 99047757666-68999854998778999999999960187897099998741289999999689999999998614998
Q 000406 753 MVGQEPILFAT-SILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPR 831 (1560)
Q Consensus 753 ~v~Q~~~lf~~-ti~eNi~~~~~~~~~~~i~~a~~~~~~~~~i~~lp~gl~t~ig~~g~~LSgGQkQrialARAll~~~~ 831 (1560)
||+|++.+|+. ||+||+.++.......+..+. +.+.++.+ |+..........||||||||++||||++.+|+
T Consensus 74 ~v~Q~~~l~~~ltV~enl~~~l~~~~~~~~~~~-----v~~~l~~~--gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~ 146 (240)
T d2onka1 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRR-----VREMAEKL--GIAHLLDRKPARLSGGERQRVALARALVIQPR 146 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHH-----HHHHHHTT--TCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred EECCCHHHCCCCHHHHHHHHHHCCCCHHHHHHH-----HHHHHHHC--CCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCC
T ss_conf 252314435220155766653233677889999-----99999863--83756657944489999899999877751677
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEECCCCCCCC-CCEEEEEECCEEEEECCHHHHHHH
Q ss_conf 7998277889999999999999998059--9679998459550012-798999919859885270357530
Q 000406 832 ILLLDEPTSALDSESESIVQQAIDKISV--GRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLER 899 (1560)
Q Consensus 832 iliLDE~ts~lD~~t~~~i~~~l~~~~~--~~Tvi~itH~l~~i~~-~D~I~vl~~G~i~e~G~~~~l~~~ 899 (1560)
||+||||||+||+.+...+.+.++++.+ +.|+|+|||+++.+.. ||+|++|++|++++.|++++++..
T Consensus 147 illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~ 217 (240)
T d2onka1 147 LLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSA 217 (240)
T ss_dssp SBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHCC
T ss_conf 06752865558879999999999999874397699981899999996999999989999999069998329
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.2e-35 Score=314.57 Aligned_cols=208 Identities=24% Similarity=0.384 Sum_probs=179.4
Q ss_pred CEEEEEEEEECCCCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCE
Q ss_conf 28998789996999996300100599958939999959999888999999625689832899999855788988875231
Q 000406 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQT 1392 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~~~~~vL~nIsl~I~~Ge~vaIVG~SGSGKSTLi~LL~gl~~p~~G~I~IdG~dI~~i~~~~lR~~I 1392 (1560)
-++++||+.+| +|+||||+|++||.+||+||||||||||+++|.|++ |.+|+|.++|.++...+...++...
T Consensus 3 il~~~dv~~~~-------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~ 74 (231)
T d1l7vc_ 3 VMQLQDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHR 74 (231)
T ss_dssp EEEEEEECCTT-------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHE
T ss_pred EEEEECCCCCC-------EECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCEEEEECCEECCCCCHHHHHHHC
T ss_conf 99998741571-------555888899489899999899980999999994887-9955999999999869989998640
Q ss_pred EEECCCCC-CCCCCHHHHHHCCCCCCC-HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC-
Q ss_conf 88827888-997568999714999999-999999999992899998099983020028999779579999999999815-
Q 000406 1393 ALVGQEPA-LFAGTIRDNIALGNPKAS-WAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILK- 1469 (1560)
Q Consensus 1393 a~VpQd~~-LF~gTIreNI~~g~~~~s-d~eI~~al~~a~l~d~I~~LP~GldT~Ige~G~~LSGGQkQRLaLARALL~- 1469 (1560)
+|++|+.. .|..++.+|+.++..... .+.+.++++..++ +..++....+||||||||++|||||++
T Consensus 75 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l-----------~~~~~~~~~~LSgG~~Qrv~iA~al~~~ 143 (231)
T d1l7vc_ 75 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALAL-----------DDKLGRSTNQLSGGEWQRVRLAAVVLQI 143 (231)
T ss_dssp EEECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTC-----------TTTTTSBGGGCCHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCC-----------HHHHCCCHHHCCHHHHHHHHHHHHHHHH
T ss_conf 24512135774420988764100146689999999986598-----------7676768445699889999999999851
Q ss_pred ------CCCEEEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEEECCHHHHH-HCCEEEEEECCEEEEECCHHHHHH
Q ss_conf ------99789985788587999999999999983-48965999826957786-238899996997978359888995
Q 000406 1470 ------GSRVLLLDEASSALDLESEKHVQDALRKV-SKRATTIVVAHRLSTIR-EANMIAVVRDGAVVEYGSHETLLA 1539 (1560)
Q Consensus 1470 ------~p~ILILDEaTSaLD~~tE~~I~~~L~~~-~~~~TVIvIaHRlsti~-~aDrIiVL~~G~Ive~Gt~~eLl~ 1539 (1560)
+|+||||||||++||+.+...+.+.|+++ .+++|+|+++|+++.+. .||||++|++|+|++.|+++|++.
T Consensus 144 ~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~ 221 (231)
T d1l7vc_ 144 TPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 221 (231)
T ss_dssp CTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSC
T ss_pred CCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHC
T ss_conf 713389988999718777789899999999999998679999999677999999799999997998999889999818
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=7.9e-33 Score=293.92 Aligned_cols=191 Identities=20% Similarity=0.392 Sum_probs=159.5
Q ss_pred CEEEEEEEEECCCCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCE
Q ss_conf 28998789996999996300100599958939999959999888999999625689832899999855788988875231
Q 000406 1313 GIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQT 1392 (1560)
Q Consensus 1313 ~I~~~nVsf~Y~~~~~~~vL~nIsl~I~~Ge~vaIVG~SGSGKSTLi~LL~gl~~p~~G~I~IdG~dI~~i~~~~lR~~I 1392 (1560)
.|+++|++++|+ +++|+|+||+|++||.+||+||||||||||+++|+|+++|++|+|.+||+++.. +|.++
T Consensus 2 ~lev~~ls~~y~----~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~-----~~~~i 72 (200)
T d1sgwa_ 2 KLEIRDLSVGYD----KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK-----VKGKI 72 (200)
T ss_dssp EEEEEEEEEESS----SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGG-----GGGGE
T ss_pred EEEEEEEEEEEC----CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHHH-----HCCCE
T ss_conf 599998999939----928842088985998999999999719999999966205677889999896267-----36708
Q ss_pred EEECCCCCCCCC-CHHHHHHCC----CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 888278889975-689997149----999999999999999928999980999830200289997795799999999998
Q 000406 1393 ALVGQEPALFAG-TIRDNIALG----NPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAI 1467 (1560)
Q Consensus 1393 a~VpQd~~LF~g-TIreNI~~g----~~~~sd~eI~~al~~a~l~d~I~~LP~GldT~Ige~G~~LSGGQkQRLaLARAL 1467 (1560)
+|+||++.++.. |+.+|+.+. ....+++++.++++...+. .++..++ +||||||||++|||||
T Consensus 73 ~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~--------~~~~~~~----~LSgG~~qrv~ia~al 140 (200)
T d1sgwa_ 73 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVL--------DLKKKLG----ELSQGTIRRVQLASTL 140 (200)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCC--------CTTSBGG----GSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCC--------CCCCCCC----CCCCCHHHHHHHHHHH
T ss_conf 999501357888289999999997548863799999999874885--------6301268----6897188889999988
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEEC
Q ss_conf 1599789985788587999999999999983489659998269577862388999969
Q 000406 1468 LKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIREANMIAVVRD 1525 (1560)
Q Consensus 1468 L~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~TVIvIaHRlsti~~aDrIiVL~~ 1525 (1560)
+.+|+++||||||++||+.++..+++.|.+..+++++++|+|+. .+..||++.+|.+
T Consensus 141 ~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~-~l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 141 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSRE-ELSYCDVNENLHK 197 (200)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESS-CCTTSSEEEEGGG
T ss_pred HCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEC-HHHHCCHHHHEEE
T ss_conf 64998999868620169999999999999998679999999916-2544161234010
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6.7e-33 Score=294.56 Aligned_cols=209 Identities=25% Similarity=0.394 Sum_probs=178.8
Q ss_pred EEEEEEEEECCCCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEE
Q ss_conf 99997999969999865322202674299899985699998379999996298999648999995267865887735489
Q 000406 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIG 752 (1560)
Q Consensus 673 i~~~~vsf~y~~~~~~~vL~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~ 752 (1560)
++++||+++| +|++|||+|++||.++|+|+||||||||+++|.|+. |.+|+|.++|.++...+...++...+
T Consensus 4 l~~~dv~~~~-------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~~ 75 (231)
T d1l7vc_ 4 MQLQDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRA 75 (231)
T ss_dssp EEEEEECCTT-------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHEE
T ss_pred EEEECCCCCC-------EECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCEEEEECCEECCCCCHHHHHHHCE
T ss_conf 9998741571-------555888899489899999899980999999994887-99559999999998699899986402
Q ss_pred EEECCCC-CCCCCHHHHHHCCCCCCCHH-HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC--
Q ss_conf 9904775-76666899985499877899-9999999960187897099998741289999999689999999998614--
Q 000406 753 MVGQEPI-LFATSILENVLMGKENATMK-EAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIK-- 828 (1560)
Q Consensus 753 ~v~Q~~~-lf~~ti~eNi~~~~~~~~~~-~i~~a~~~~~~~~~i~~lp~gl~t~ig~~g~~LSgGQkQrialARAll~-- 828 (1560)
+++|+.. .|..++.+++.++....... .+.+.+... +++..++....+||||||||++||||+++
T Consensus 76 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-----------~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~ 144 (231)
T d1l7vc_ 76 YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGAL-----------ALDDKLGRSTNQLSGGEWQRVRLAAVVLQIT 144 (231)
T ss_dssp EECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHT-----------TCTTTTTSBGGGCCHHHHHHHHHHHHHHHHC
T ss_pred EEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHC-----------CCHHHHCCCHHHCCHHHHHHHHHHHHHHHHC
T ss_conf 45121357744209887641001466899999999865-----------9876767684456998899999999998517
Q ss_pred -----CCCEEEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEEECCCCCCCC-CCEEEEEECCEEEEECCHHHHHHHC
Q ss_conf -----99879982778899999999999999980-599679998459550012-7989999198598852703575305
Q 000406 829 -----DPRILLLDEPTSALDSESESIVQQAIDKI-SVGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLERG 900 (1560)
Q Consensus 829 -----~~~iliLDE~ts~lD~~t~~~i~~~l~~~-~~~~Tvi~itH~l~~i~~-~D~I~vl~~G~i~e~G~~~~l~~~~ 900 (1560)
+|+||||||||++||+.+...+.+.++++ .+++|+|+++|+++.+.. ||+|++|++|++++.|++++++..+
T Consensus 145 p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~~~ 223 (231)
T d1l7vc_ 145 PQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPP 223 (231)
T ss_dssp TTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSCHH
T ss_pred CCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCCH
T ss_conf 1338998899971877778989999999999999867999999967799999979999999799899988999981886
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.97 E-value=4.5e-30 Score=270.15 Aligned_cols=191 Identities=21% Similarity=0.371 Sum_probs=154.8
Q ss_pred CEEEEEEEEECCCCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCE
Q ss_conf 39999799996999986532220267429989998569999837999999629899964899999526786588773548
Q 000406 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQI 751 (1560)
Q Consensus 672 ~i~~~~vsf~y~~~~~~~vL~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 751 (1560)
.|+++|++++|+ .++|+|+||+|++|+.++|+||||||||||+++|+|+++|++|+|.+||.++.. ++.++
T Consensus 2 ~lev~~ls~~y~----~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~-----~~~~i 72 (200)
T d1sgwa_ 2 KLEIRDLSVGYD----KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK-----VKGKI 72 (200)
T ss_dssp EEEEEEEEEESS----SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGG-----GGGGE
T ss_pred EEEEEEEEEEEC----CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHHH-----HCCCE
T ss_conf 599998999939----928842088985998999999999719999999966205677889999896267-----36708
Q ss_pred EEEECCCCCCCC-CHHHHHHCC----CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 999047757666-689998549----987789999999999601878970999987412899999996899999999986
Q 000406 752 GMVGQEPILFAT-SILENVLMG----KENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAM 826 (1560)
Q Consensus 752 ~~v~Q~~~lf~~-ti~eNi~~~----~~~~~~~~i~~a~~~~~~~~~i~~lp~gl~t~ig~~g~~LSgGQkQrialARAl 826 (1560)
+|+||++.++.. |+.+|+.+. ......+++.++++..++. +++..+ .+||||||||++||||+
T Consensus 73 ~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~--------~~~~~~----~~LSgG~~qrv~ia~al 140 (200)
T d1sgwa_ 73 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVL--------DLKKKL----GELSQGTIRRVQLASTL 140 (200)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCC--------CTTSBG----GGSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCC--------CCCCCC----CCCCCCHHHHHHHHHHH
T ss_conf 999501357888289999999997548863799999999874885--------630126----86897188889999988
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEEEEC
Q ss_conf 1499879982778899999999999999980599679998459550012798999919
Q 000406 827 IKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQ 884 (1560)
Q Consensus 827 l~~~~iliLDE~ts~lD~~t~~~i~~~l~~~~~~~Tvi~itH~l~~i~~~D~I~vl~~ 884 (1560)
+.+|+++||||||++||++++..+.+.+.+..+++++++|+|+- .+..||.+.+|.+
T Consensus 141 ~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~-~l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 141 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSRE-ELSYCDVNENLHK 197 (200)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESS-CCTTSSEEEEGGG
T ss_pred HCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEC-HHHHCCHHHHEEE
T ss_conf 64998999868620169999999999999998679999999916-2544161234010
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.96 E-value=9.2e-24 Score=215.72 Aligned_cols=315 Identities=17% Similarity=0.241 Sum_probs=280.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99998985025679999999999999967779999999999987037999704554477999999999999999999999
Q 000406 332 LFSLFKYSTKLDMILVLLGCIGALINGGALPWYSYFFGNFVNKIANESSDPDKTQMMKDAEKICLLMTVLAAIVMMGAYL 411 (1560)
Q Consensus 332 ~~~l~~y~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 411 (1560)
++++++|.+++ ++.+++++++.++.+++.+..+++++.++|...... + ...+..++..++++.++..++.++
T Consensus 4 ~krl~~~~~~~-k~~l~~~~i~~~~~~~~~~~~~~~~~~~id~~~~~~---~----~~~l~~~~~~~~~~~~~~~i~~~~ 75 (319)
T d3b60a2 4 FRRLWPTIAPF-KAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKT---D----RSVLLWMPLVVIGLMILRGITSYI 75 (319)
T ss_dssp HHHHHHHHGGG-HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTST---T----HHHHHHSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---C----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999-999999999999999999999999999999874468---7----789999999999999976453354
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999984590001037895699999999999999999999999999999999999999989
Q 000406 412 EITCWRLVGERSAQRIRTKYLRAVLRQDIAFFDTEVSTSDIMHGISSDIAQIQEVMGEKVAHFAHNIFTFICGYTVGFLR 491 (1560)
Q Consensus 412 ~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ffd~~~~~G~i~sr~s~Di~~i~~~l~~~l~~~i~~i~~~i~~~ii~~~~ 491 (1560)
..++..+.+.+...++|.+++++++++|+.+|++. ++|++++++++|++.+...+...+...+..++.+++.+++++..
T Consensus 76 ~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~~-~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 154 (319)
T d3b60a2 76 SSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQ-STGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYY 154 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCCSTHHHHS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 66544343100011000477776501011110233-32211111212121000011111200112334456688888765
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 78999999999999999999999999999899999999999999999945999998352299999999999848688769
Q 000406 492 SWKVSLVVLSVTPLMMFCGMAYKAVYVGLTSKEEASYRRAGSVAEQAISSIRTVFSFVAEDHFAVRYAGLLADSIPFGAK 571 (1560)
Q Consensus 492 s~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIkaf~~e~~~~~~~~~~~~~~~~~~~~ 571 (1560)
+|.+++++++++|+..++...+.+...+..++..+..++..+...|.++|++++|+|++|+.+.+++.+..++..+...+
T Consensus 155 ~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 234 (319)
T d3b60a2 155 SWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMK 234 (319)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 20021025668999999887666687787898876445677887776248723531110102456666653135677888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 98998787899999999999999999999995066648999999999999799999999999999999999999999970
Q 000406 572 LGFAKGAGMGVIYLVTYATWALAFWYGSILVARKELSGGAAIACFFGVNVGGRGLALSLSYFAQFAQGTVAATRVFEIID 651 (1560)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~l~~~~g~~lv~~g~~t~g~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~a~~Ri~~~l~ 651 (1560)
.............++..+..++++++|++++..|.+++|.+++++.++..+..|+..+...+..++++.++.+|+++++|
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~elld 314 (319)
T d3b60a2 235 MVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILD 314 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 88777740640100000023799999999998099789999999999999999999999999999999999999999966
Q ss_pred CCCC
Q ss_conf 1999
Q 000406 652 RVPE 655 (1560)
Q Consensus 652 ~~~~ 655 (1560)
.+||
T Consensus 315 ~~~E 318 (319)
T d3b60a2 315 SEQE 318 (319)
T ss_dssp SCCS
T ss_pred CCCC
T ss_conf 9989
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.96 E-value=2.3e-24 Score=220.96 Aligned_cols=322 Identities=13% Similarity=0.147 Sum_probs=277.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99998985025679999999999999967779999999999987037999704554477999999999999999999999
Q 000406 332 LFSLFKYSTKLDMILVLLGCIGALINGGALPWYSYFFGNFVNKIANESSDPDKTQMMKDAEKICLLMTVLAAIVMMGAYL 411 (1560)
Q Consensus 332 ~~~l~~y~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 411 (1560)
++++++|.+++ ++.+++.+++.++.+++....+++.+.++|.+...................+..+.++.++..+..++
T Consensus 2 lKrl~~~~k~~-k~~~~~~~~~~~~~~~~~~~~p~l~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 80 (323)
T d2hyda2 2 IKRYLQFVKPY-KYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFI 80 (323)
T ss_dssp HHHHHHHHGGG-HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999999-99999999999999999999999999999998626774215568999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999984590001037895699999999999999999999999999999999999999989
Q 000406 412 EITCWRLVGERSAQRIRTKYLRAVLRQDIAFFDTEVSTSDIMHGISSDIAQIQEVMGEKVAHFAHNIFTFICGYTVGFLR 491 (1560)
Q Consensus 412 ~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ffd~~~~~G~i~sr~s~Di~~i~~~l~~~l~~~i~~i~~~i~~~ii~~~~ 491 (1560)
..++..+.+.+...++|.+++++++++|++||++. ++|++++++++|++.+++.+...+...+..++.+++.+++++..
T Consensus 81 ~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~-~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~ 159 (323)
T d2hyda2 81 RQYLAQWTSNKILYDIRKKLYNHLQALSARFYANN-QVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFL 159 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTS-CHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CCCCCCCCCCHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 99999999985567788887665402332100012-22110001111332100111345420111466533465440000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 78999999999999999999999999999899999999999999999945999998352299999999999848688769
Q 000406 492 SWKVSLVVLSVTPLMMFCGMAYKAVYVGLTSKEEASYRRAGSVAEQAISSIRTVFSFVAEDHFAVRYAGLLADSIPFGAK 571 (1560)
Q Consensus 492 s~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIkaf~~e~~~~~~~~~~~~~~~~~~~~ 571 (1560)
+|.++++.+++.|+..++...+.+...+..++..+..++..+.+.|.++|+++||+|++|+.+.+++.+..++..+...+
T Consensus 160 ~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k 239 (323)
T d2hyda2 160 DVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALK 239 (323)
T ss_dssp CTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHCCCCCCCCHHHH
T ss_conf 14688899998877777776412333202677898999999787887559702346764111002330223111101567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 98998787899999999999999999999995066648999999999999799999999999999999999999999970
Q 000406 572 LGFAKGAGMGVIYLVTYATWALAFWYGSILVARKELSGGAAIACFFGVNVGGRGLALSLSYFAQFAQGTVAATRVFEIID 651 (1560)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~l~~~~g~~lv~~g~~t~g~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~a~~Ri~~~l~ 651 (1560)
.............++..+..++.+++|.+++.+|.+++|.+++++.+...+..++..+...+..+.++.++++|+++++|
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~elLd 319 (323)
T d2hyda2 240 HTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLID 319 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 76520000111110120558999999999998499889999999999999999999999999999999999999999977
Q ss_pred CCCC
Q ss_conf 1999
Q 000406 652 RVPE 655 (1560)
Q Consensus 652 ~~~~ 655 (1560)
++||
T Consensus 320 ~e~e 323 (323)
T d2hyda2 320 EDYD 323 (323)
T ss_dssp CCCS
T ss_pred CCCC
T ss_conf 9998
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.93 E-value=1.1e-20 Score=189.09 Aligned_cols=315 Identities=18% Similarity=0.199 Sum_probs=269.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 38999996314579999999999999999999999999999998610210111117899999999999999999999899
Q 000406 978 QLSEIWKLQRPEFAMIIFGFILGMHAGAILSIFPLILGQALQVYFDDTASTLRRDVRYLSLALVGLGFGCIIFMTGQQGF 1057 (1560)
Q Consensus 978 ~~~~l~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ll~~~i~~~~~~~~~~~~~~~~~~~~~~l~l~i~~~i~~~~~~~~ 1057 (1560)
.+++++++.+++++.+++.+++.++.+++....|++++.+++..+... .......+.+.++++.++..++.+...++
T Consensus 3 ~~krl~~~~~~~k~~l~~~~i~~~~~~~~~~~~~~~~~~~id~~~~~~---~~~~l~~~~~~~~~~~~~~~i~~~~~~~~ 79 (319)
T d3b60a2 3 TFRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKT---DRSVLLWMPLVVIGLMILRGITSYISSYC 79 (319)
T ss_dssp HHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTST---THHHHHHSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 899999999999999999999999999999999999999999874468---77899999999999999764533546654
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999807998754556776799999861099999999789999999999999999999998799
Q 000406 1058 CGWAGTKLTMRVRELLFRSILKQEPGWFDFEENSTGVLVSRLSIDSISFRSVLGDRFSVLLMGLSSAAVGLGVSLVLNWR 1137 (1560)
Q Consensus 1058 ~~~~~~~~~~~lr~~l~~~ll~~p~~~f~~~~~~~G~il~rls~Di~~i~~~i~~~i~~~i~~~~~~i~~l~~~~~~~~~ 1137 (1560)
..+.+.++..++|..++++++++|+.+|+ ++++|++++|+++|+..+...+...+...+..+...++.++.++.++|.
T Consensus 80 ~~~~~~~~~~~l~~~~~~~ll~~~~~~~~--~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 157 (319)
T d3b60a2 80 ISWVSGKVVMTMRRRLFGHMMGMPVAFFD--KQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQ 157 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCSTHHH--HSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHCCCCCHHHHHHHHHCCCCHHHCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 43431000110004777765010111102--3332211111212121000011111200112334456688888765200
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999997-104133432699999899988501067872241599999999997345899989999
Q 000406 1138 LTLVAAALTPFTLGASYLSLII-NVGPKIDNSSYAKASSIASGAVSNIRTVTTFSAQEQIINSFDKALSEPKKKSVKRSQ 1216 (1560)
Q Consensus 1138 lali~l~~~pl~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~e~i~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~ 1216 (1560)
+++++++.+|+........... ....+.......+..+...|.+.|++++|.++.++.+.+++++..++..+...+...
T Consensus 158 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 237 (319)
T d3b60a2 158 LSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVS 237 (319)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 21025668999999887666687787898876445677887776248723531110102456666653135677888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99778999999999999999999999985086528899999999999999999987459899999988999999730288
Q 000406 1217 ILGLTLGFSQGAMYVAYTFTLWFGAYLVKQGHASFGVVYKIFLILVLSSFSVGQLAGLAPDTSMAATAIPAVLQITKRKP 1296 (1560)
Q Consensus 1217 ~~~~~~~~~~~~~~l~~~~~l~~g~~lv~~g~~s~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~a~~s~~ri~~i~~~~~ 1296 (1560)
..............+..++++++|++++..|.++.|.+++++.+......|+..+.......+.+..+.+|+.++++.++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~elld~~~ 317 (319)
T d3b60a2 238 ASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQ 317 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 77740640100000023799999999998099789999999999999999999999999999999999999999966998
Q ss_pred C
Q ss_conf 5
Q 000406 1297 L 1297 (1560)
Q Consensus 1297 ~ 1297 (1560)
|
T Consensus 318 E 318 (319)
T d3b60a2 318 E 318 (319)
T ss_dssp S
T ss_pred C
T ss_conf 9
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.92 E-value=1.4e-20 Score=188.37 Aligned_cols=317 Identities=16% Similarity=0.216 Sum_probs=263.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q ss_conf 899999631457999999999999999999999999999999861021011111789----9999999999999999999
Q 000406 979 LSEIWKLQRPEFAMIIFGFILGMHAGAILSIFPLILGQALQVYFDDTASTLRRDVRY----LSLALVGLGFGCIIFMTGQ 1054 (1560)
Q Consensus 979 ~~~l~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ll~~~i~~~~~~~~~~~~~~~~~----~~~~~l~l~i~~~i~~~~~ 1054 (1560)
+++++++.+++++.++..+++.++.+++....|++++.+++................ +...++++.+...++....
T Consensus 2 lKrl~~~~k~~k~~~~~~~~~~~~~~~~~~~~p~l~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 81 (323)
T d2hyda2 2 IKRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIR 81 (323)
T ss_dssp HHHHHHHHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999999999999999999999999999999999999986267742155689999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999999999999999999999807998754556776799999861099999999789999999999999999999998
Q 000406 1055 QGFCGWAGTKLTMRVRELLFRSILKQEPGWFDFEENSTGVLVSRLSIDSISFRSVLGDRFSVLLMGLSSAAVGLGVSLVL 1134 (1560)
Q Consensus 1055 ~~~~~~~~~~~~~~lr~~l~~~ll~~p~~~f~~~~~~~G~il~rls~Di~~i~~~i~~~i~~~i~~~~~~i~~l~~~~~~ 1134 (1560)
.++..+.+.++..++|.+++++++++|+.||+ ++++|++++|+++|+..+++.+...+...+..+...++.++.++++
T Consensus 82 ~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~--~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~ 159 (323)
T d2hyda2 82 QYLAQWTSNKILYDIRKKLYNHLQALSARFYA--NNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFL 159 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHH--TSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC--CCCCCCCCCCCCHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 99999999855677888876654023321000--1222110001111332100111345420111466533465440000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7999999999999999999999997-104133432699999899988501067872241599999999997345899989
Q 000406 1135 NWRLTLVAAALTPFTLGASYLSLII-NVGPKIDNSSYAKASSIASGAVSNIRTVTTFSAQEQIINSFDKALSEPKKKSVK 1213 (1560)
Q Consensus 1135 ~~~lali~l~~~pl~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~e~i~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~ 1213 (1560)
+|.++++.++..|+.+......... ....+.......+..+.+.|.++|+++||.++.++.+.+++++..++..+...+
T Consensus 160 ~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k 239 (323)
T d2hyda2 160 DVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALK 239 (323)
T ss_dssp CTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHCCCCCCCCHHHH
T ss_conf 14688899998877777776412333202677898999999787887559702346764111002330223111101567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999778999999999999999999999985086528899999999999999999987459899999988999999730
Q 000406 1214 RSQILGLTLGFSQGAMYVAYTFTLWFGAYLVKQGHASFGVVYKIFLILVLSSFSVGQLAGLAPDTSMAATAIPAVLQITK 1293 (1560)
Q Consensus 1214 ~~~~~~~~~~~~~~~~~l~~~~~l~~g~~lv~~g~~s~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~a~~s~~ri~~i~~ 1293 (1560)
..........+...+..+...+++++|++++..|.++.|.++++..+......|+..+...+.+.+.+..+.+|+.++++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~elLd 319 (323)
T d2hyda2 240 HTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLID 319 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 76520000111110120558999999999998499889999999999999999999999999999999999999999977
Q ss_pred CCCC
Q ss_conf 2885
Q 000406 1294 RKPL 1297 (1560)
Q Consensus 1294 ~~~~ 1297 (1560)
++|+
T Consensus 320 ~e~e 323 (323)
T d2hyda2 320 EDYD 323 (323)
T ss_dssp CCCS
T ss_pred CCCC
T ss_conf 9998
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.40 E-value=1.1e-14 Score=137.38 Aligned_cols=172 Identities=11% Similarity=0.067 Sum_probs=116.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCEEEECCCCCCCCCCHHHHHHCCCCCCCHHHHH
Q ss_conf 99999599998889999996256898328999998557889888752318882788899756899971499999999999
Q 000406 1344 MVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKASWAEIE 1423 (1560)
Q Consensus 1344 ~vaIVG~SGSGKSTLi~LL~gl~~p~~G~I~IdG~dI~~i~~~~lR~~Ia~VpQd~~LF~gTIreNI~~g~~~~sd~eI~ 1423 (1560)
+++|+||+|||||||++.|+|+++|..|.+.+++.+................++...++..+..++...+......+.
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 79 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQY-- 79 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTEEECHHH--
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH--
T ss_conf 899998999389999999981488886469987713288887653112336677788754113455443023037625--
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCC--CHHHHHHHHHHHHHHCCC
Q ss_conf 999999289999809998302002899977957999999999981599789985788587--999999999999983489
Q 000406 1424 EAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSAL--DLESEKHVQDALRKVSKR 1501 (1560)
Q Consensus 1424 ~al~~a~l~d~I~~LP~GldT~Ige~G~~LSGGQkQRLaLARALL~~p~ILILDEaTSaL--D~~tE~~I~~~L~~~~~~ 1501 (1560)
..+++|++|+.++++++..+|+++++||++... +.+....+.+.++ ..+
T Consensus 80 ---------------------------~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~~~~~~~~l~~~l~--~~~ 130 (178)
T d1ye8a1 80 ---------------------------FEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMH--DPN 130 (178)
T ss_dssp ---------------------------HHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHT--CTT
T ss_pred ---------------------------HHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHC--CCC
T ss_conf ---------------------------665320137899999974099742302777310045799999998750--579
Q ss_pred CEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHHCCCHHHHHHHHH
Q ss_conf 659998269577862388999969979783598889952158299999999
Q 000406 1502 ATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETLLASHLNGVYASLVRA 1552 (1560)
Q Consensus 1502 ~TVIvIaHRlsti~~aDrIiVL~~G~Ive~Gt~~eLl~~~~~g~y~~l~~~ 1552 (1560)
+|+|+++|+.+....+|++..+++|++++.+.. +++..+.+++..
T Consensus 131 ~~il~~~h~~~~~~~~~~i~~~~~~~i~~v~~~------nrd~~~~~i~~~ 175 (178)
T d1ye8a1 131 VNVVATIPIRDVHPLVKEIRRLPGAVLIELTPE------NRDVILEDILSL 175 (178)
T ss_dssp SEEEEECCSSCCSHHHHHHHTCTTCEEEECCTT------TTTTHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHCEEEEEECCEEEEECCC------CHHHHHHHHHHH
T ss_conf 789999744778986365998719999998996------478899999999
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.21 E-value=5.4e-13 Score=122.85 Aligned_cols=159 Identities=13% Similarity=0.054 Sum_probs=106.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHH
Q ss_conf 99985699998379999996298999648999995267865887735489990477576666899985499877899999
Q 000406 703 TLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAV 782 (1560)
Q Consensus 703 ~~aivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~i~ 782 (1560)
+++|+||+|||||||++.++|++++..|.+.+++.+....+...........++...++......+...++.....+
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 78 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQ--- 78 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTEEECHH---
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---
T ss_conf 89999899938999999998148888646998771328888765311233667778875411345544302303762---
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCC--HHHHHHHHHHHHHHCCC
Q ss_conf 9999960187897099998741289999999689999999998614998799827788999--99999999999980599
Q 000406 783 AACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALD--SESESIVQQAIDKISVG 860 (1560)
Q Consensus 783 ~a~~~~~~~~~i~~lp~gl~t~ig~~g~~LSgGQkQrialARAll~~~~iliLDE~ts~lD--~~t~~~i~~~l~~~~~~ 860 (1560)
...+++|++++.++++++.++|+++++||+....+ .+....+.+.++ ..+
T Consensus 79 --------------------------~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~~~~~~~~l~~~l~--~~~ 130 (178)
T d1ye8a1 79 --------------------------YFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMH--DPN 130 (178)
T ss_dssp --------------------------HHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHT--CTT
T ss_pred --------------------------HHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHC--CCC
T ss_conf --------------------------5665320137899999974099742302777310045799999998750--579
Q ss_pred CEEEEEECCCCCCCCCCEEEEEECCEEEEECC
Q ss_conf 67999845955001279899991985988527
Q 000406 861 RTTIVIAHRLATVKNANTIVVLDQGSVVEIGN 892 (1560)
Q Consensus 861 ~Tvi~itH~l~~i~~~D~I~vl~~G~i~e~G~ 892 (1560)
.|+|+++|+......+|++..+++|++++.+.
T Consensus 131 ~~il~~~h~~~~~~~~~~i~~~~~~~i~~v~~ 162 (178)
T d1ye8a1 131 VNVVATIPIRDVHPLVKEIRRLPGAVLIELTP 162 (178)
T ss_dssp SEEEEECCSSCCSHHHHHHHTCTTCEEEECCT
T ss_pred CEEEEEECCHHHHHHHCEEEEEECCEEEEECC
T ss_conf 78999974477898636599871999999899
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.16 E-value=1.1e-09 Score=94.36 Aligned_cols=72 Identities=25% Similarity=0.385 Sum_probs=61.7
Q ss_pred CCCHHHHHHHHHHHHH----CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC-CCEEEEEECCHHHHHHCCEEEEE
Q ss_conf 7795799999999998----159978998578858799999999999998348-96599982695778623889999
Q 000406 1452 QLSGGQKQRIAIARAI----LKGSRVLLLDEASSALDLESEKHVQDALRKVSK-RATTIVVAHRLSTIREANMIAVV 1523 (1560)
Q Consensus 1452 ~LSGGQkQRLaLARAL----L~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~-~~TVIvIaHRlsti~~aDrIiVL 1523 (1560)
.||||||.+++||-.+ +.++||++||||+++||+.....+.+.|.+... +.-+|+|||++..+..+|+++.+
T Consensus 332 ~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 332 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGV 408 (427)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEE
T ss_conf 32230479999999999954799977999688777899999999999999728998899995878999736617999
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.01 E-value=9.5e-09 Score=86.24 Aligned_cols=75 Identities=29% Similarity=0.426 Sum_probs=58.5
Q ss_pred CCCHHHHHHHHHHHHH----CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEE--EEC
Q ss_conf 7795799999999998----1599789985788587999999999999983489659998269577862388999--969
Q 000406 1452 QLSGGQKQRIAIARAI----LKGSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLSTIREANMIAV--VRD 1525 (1560)
Q Consensus 1452 ~LSGGQkQRLaLARAL----L~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~TVIvIaHRlsti~~aDrIiV--L~~ 1525 (1560)
.+|+||++.+.++..+ ..+++++++|||-++|++...+.+.+.|++..++.-+|++||++..+..+|+++. +++
T Consensus 219 ~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~~~d~~~~v~~~~ 298 (308)
T d1e69a_ 219 LLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVN 298 (308)
T ss_dssp GSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESS
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEEEEEC
T ss_conf 02577766777776655654226744554320335797899999999998554887999989889997324289999969
Q ss_pred C
Q ss_conf 9
Q 000406 1526 G 1526 (1560)
Q Consensus 1526 G 1526 (1560)
|
T Consensus 299 g 299 (308)
T d1e69a_ 299 G 299 (308)
T ss_dssp S
T ss_pred C
T ss_conf 9
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.85 E-value=8.8e-08 Score=77.91 Aligned_cols=76 Identities=29% Similarity=0.366 Sum_probs=65.6
Q ss_pred CCCCHHHHHHHHHHHHH----CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEE--EE
Q ss_conf 99996899999999986----1499879982778899999999999999980599679998459550012798999--91
Q 000406 810 TQLSGGQKQRIALARAM----IKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKNANTIVV--LD 883 (1560)
Q Consensus 810 ~~LSgGQkQrialARAl----l~~~~iliLDE~ts~lD~~t~~~i~~~l~~~~~~~Tvi~itH~l~~i~~~D~I~v--l~ 883 (1560)
..+|+|||+.+.++..+ ...+.++++|||-++|++...+.+.+.|+...++.-+|++||+...+..+|+++. ++
T Consensus 218 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~~~d~~~~v~~~ 297 (308)
T d1e69a_ 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMV 297 (308)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEES
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEEEEE
T ss_conf 10257776677777665565422674455432033579789999999999855488799998988999732428999996
Q ss_pred CC
Q ss_conf 98
Q 000406 884 QG 885 (1560)
Q Consensus 884 ~G 885 (1560)
+|
T Consensus 298 ~g 299 (308)
T d1e69a_ 298 NG 299 (308)
T ss_dssp SS
T ss_pred CC
T ss_conf 99
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.10 E-value=1.4e-05 Score=58.95 Aligned_cols=72 Identities=26% Similarity=0.303 Sum_probs=61.1
Q ss_pred CCCHHHHHHHHHHHH----HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCCCCCCCCCEEEEE
Q ss_conf 999689999999998----614998799827788999999999999999805-996799984595500127989999
Q 000406 811 QLSGGQKQRIALARA----MIKDPRILLLDEPTSALDSESESIVQQAIDKIS-VGRTTIVIAHRLATVKNANTIVVL 882 (1560)
Q Consensus 811 ~LSgGQkQrialARA----ll~~~~iliLDE~ts~lD~~t~~~i~~~l~~~~-~~~Tvi~itH~l~~i~~~D~I~vl 882 (1560)
.||||||.+++||-. .+.++++++||||+++||+.....+.+.|.+.. .+.-+|+|||+...+..+|+++.+
T Consensus 332 ~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 332 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGV 408 (427)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEE
T ss_conf 32230479999999999954799977999688777899999999999999728998899995878999736617999
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.30 E-value=0.029 Score=30.32 Aligned_cols=35 Identities=20% Similarity=0.149 Sum_probs=28.2
Q ss_pred CCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 53222026742998999856999983799999962
Q 000406 689 VILRSLNLVIPSSKTLALVGTSGGGKSTVFALIER 723 (1560)
Q Consensus 689 ~vL~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g 723 (1560)
+-|+.+.--+.+|+.+.|.|++|+||||++.-+..
T Consensus 23 ~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp TTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 66888746978980899994799979999999997
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=95.78 E-value=0.047 Score=28.50 Aligned_cols=175 Identities=17% Similarity=0.175 Sum_probs=81.1
Q ss_pred CCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHC-CCCCCCCEEEECCEECCCCCHHHHHHC-EEEECCCCCCCCCCHH
Q ss_conf 30010059995893999995999988899999962-568983289999985578898887523-1888278889975689
Q 000406 1330 TVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQR-FYDPNQGKVMIEGVDLREINVKWLRKQ-TALVGQEPALFAGTIR 1407 (1560)
Q Consensus 1330 ~vL~nIsl~I~~Ge~vaIVG~SGSGKSTLi~LL~g-l~~p~~G~I~IdG~dI~~i~~~~lR~~-Ia~VpQd~~LF~gTIr 1407 (1560)
+-|+.+..-+.||+.+.|.|++|+||||++.-++. +..-..-.+.+-. -+.+.+....+ ++...+-+.--..+.+
T Consensus 23 ~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~s---~E~~~~~~~~r~~~~~~~~~~~~~~~~~ 99 (277)
T d1cr2a_ 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM---LEESVEETAEDLIGLHNRVRLRQSDSLK 99 (277)
T ss_dssp TTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEE---SSSCHHHHHHHHHHHHTTCCGGGCHHHH
T ss_pred HHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEE---ECCCHHHHHHHHHHHHHCCCCHHHCCCC
T ss_conf 6688874697898089999479997999999999726553366345764---0111135776999986458710101222
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH--HCCCCCEEEEECCCCCCCH
Q ss_conf 99714999999999999999992899998099983020028999779579999999999--8159978998578858799
Q 000406 1408 DNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARA--ILKGSRVLLLDEASSALDL 1485 (1560)
Q Consensus 1408 eNI~~g~~~~sd~eI~~al~~a~l~d~I~~LP~GldT~Ige~G~~LSGGQkQRLaLARA--LL~~p~ILILDEaTSaLD~ 1485 (1560)
.+ .++...+.++...+...-...+-+....+...+ .+...+. --.+|+++++|=-+ .++.
T Consensus 100 ~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~vvID~l~-~l~~ 161 (277)
T d1cr2a_ 100 RE---------------IIENGKFDQWFDELFGNDTFHLYDSFAEAETDR--LLAKLAYMRSGLGCDVIILDHIS-IVVS 161 (277)
T ss_dssp HH---------------HHHTSHHHHHHHHHHSSSCEEEECCC-CCCHHH--HHHHHHHHHHTTCCSEEEEEEEE-C---
T ss_pred CC---------------HHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHH--HHHHHHHHHHCCCCCEEEECCCC-CCCC
T ss_conf 22---------------145677888988740352146621433106899--99986543213676259970542-1203
Q ss_pred --------HHHHHHHHHHHHHC--CCCEEEEEECCH----------------HH-------HHHCCEEEEEEC
Q ss_conf --------99999999999834--896599982695----------------77-------862388999969
Q 000406 1486 --------ESEKHVQDALRKVS--KRATTIVVAHRL----------------ST-------IREANMIAVVRD 1525 (1560)
Q Consensus 1486 --------~tE~~I~~~L~~~~--~~~TVIvIaHRl----------------st-------i~~aDrIiVL~~ 1525 (1560)
+....+.+.|++++ .+++|++++|=- +. ...||.++.+..
T Consensus 162 ~~~~~~~~~~~~~~~~~l~~lA~~~~i~vi~~~q~~r~~~~~~~~~~~~~~~~~~~gS~~i~~~ad~vl~l~r 234 (277)
T d1cr2a_ 162 ASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALER 234 (277)
T ss_dssp -------CHHHHHHHHHHHHHHHHHCCEEEEEEECC---------------------CHHHHHHCSEEEEEEC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHCCEEEEEEE
T ss_conf 4654430677899999999976501655203103563224445543333211212343001503869999984
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=95.42 E-value=0.0083 Score=35.00 Aligned_cols=40 Identities=25% Similarity=0.390 Sum_probs=30.2
Q ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 2674299899985699998379999996298999648999
Q 000406 695 NLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITL 734 (1560)
Q Consensus 695 sl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~I~i 734 (1560)
...+..+..+.|+|++||||||+++.|+++.++..=-|++
T Consensus 160 ~~~v~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivti 199 (323)
T d1g6oa_ 160 KDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI 199 (323)
T ss_dssp HHHHHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred HHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEEC
T ss_conf 9999837888999403566257899986530145623311
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=95.36 E-value=0.064 Score=27.35 Aligned_cols=147 Identities=17% Similarity=0.170 Sum_probs=63.2
Q ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEEECCCCCCCCCHHHHHHCCCCCCC
Q ss_conf 42998999856999983799999962989996489999952678658877354899904775766668999854998778
Q 000406 698 IPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENAT 777 (1560)
Q Consensus 698 i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~ 777 (1560)
+.||+.+.|+|++|+|||||+.-|+--. ..|.-.++..... ..++.|+.-|.. ...+.+.+.--.....
T Consensus 26 ~~pg~~~~i~G~~G~GKS~l~l~la~~i--a~g~~~~~~~~~~-------~~~vl~~~~E~~--~~~~~~Rl~~~~~~~~ 94 (274)
T d1nlfa_ 26 MVAGTVGALVSPGGAGKSMLALQLAAQI--AGGPDLLEVGELP-------TGPVIYLPAEDP--PTAIHHRLHALGAHLS 94 (274)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHH--HTCCCTTCCCCCC-------CCCEEEEESSSC--HHHHHHHHHHHHTTSC
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHH--HCCCCCCCCCCCC-------CCCEEEEECCCH--HHHHHHHHHHHHHCCC
T ss_conf 5589589999289998999999999999--7699721112357-------873689851234--9999999999862368
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCC-----CHHHHHHHHH
Q ss_conf 99999999996018789709999874128999999968999999999861499879982778899-----9999999999
Q 000406 778 MKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSAL-----DSESESIVQQ 852 (1560)
Q Consensus 778 ~~~i~~a~~~~~~~~~i~~lp~gl~t~ig~~g~~LSgGQkQrialARAll~~~~iliLDE~ts~l-----D~~t~~~i~~ 852 (1560)
.++......... .....+....... ......+ .....+++++++|--+... |......+..
T Consensus 95 ~~~~~~~~~~~~-----------~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~ 160 (274)
T d1nlfa_ 95 AEERQAVADGLL-----------IQPLIGSLPNIMA--PEWFDGL-KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIG 160 (274)
T ss_dssp HHHHHHHHHHEE-----------ECCCTTSCCCTTS--HHHHHHH-HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHH
T ss_pred HHHHHCCCCCCE-----------ECCCCCCCCHHHH--HHHHHHH-HHHCCCCCEEECCCHHHHCCCCCCCHHHHHHHHH
T ss_conf 666531233323-----------2145674203578--9999998-8752676589628135422665232256899998
Q ss_pred HHHHHC--CCCEEEEEECC
Q ss_conf 999805--99679998459
Q 000406 853 AIDKIS--VGRTTIVIAHR 869 (1560)
Q Consensus 853 ~l~~~~--~~~Tvi~itH~ 869 (1560)
.+..+. .++++|+|.|-
T Consensus 161 ~l~~la~~~~~~vi~v~H~ 179 (274)
T d1nlfa_ 161 RMEAIAADTGCSIVFLHHA 179 (274)
T ss_dssp HHHHHHHHHCCEEEEEEEC
T ss_pred HHHHHHHCCCCCEEHHHHC
T ss_conf 8777764479754013100
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=95.20 E-value=0.071 Score=26.97 Aligned_cols=21 Identities=29% Similarity=0.322 Sum_probs=12.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999856999983799999962
Q 000406 703 TLALVGTSGGGKSTVFALIER 723 (1560)
Q Consensus 703 ~~aivG~sGsGKSTl~~ll~g 723 (1560)
.+.|+|++||||||+++.|..
T Consensus 4 lIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 4 IILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999989999999999999999
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.00 E-value=0.012 Score=33.79 Aligned_cols=34 Identities=24% Similarity=0.280 Sum_probs=23.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 9989998569999837999999629899964899
Q 000406 700 SSKTLALVGTSGGGKSTVFALIERFYDPTKGLIT 733 (1560)
Q Consensus 700 ~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~I~ 733 (1560)
+|++++++|+||.|||||++.|.+......|+|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHCCCCC
T ss_conf 6980899788987788887730535550106842
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.97 E-value=0.0048 Score=37.05 Aligned_cols=27 Identities=30% Similarity=0.348 Sum_probs=23.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 989998569999837999999629899
Q 000406 701 SKTLALVGTSGGGKSTVFALIERFYDP 727 (1560)
Q Consensus 701 G~~~aivG~sGsGKSTl~~ll~g~~~~ 727 (1560)
|..+.|+|||||||+|+++.|...++.
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~ 28 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPN 28 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 749999899999999999999845899
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=94.85 E-value=0.086 Score=26.24 Aligned_cols=156 Identities=12% Similarity=0.072 Sum_probs=71.8
Q ss_pred CCCCCEE-EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEEECCCCCCCCCHHHH
Q ss_conf 3222026-742998999856999983799999962989996489999952678658877354899904775766668999
Q 000406 690 ILRSLNL-VIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILEN 768 (1560)
Q Consensus 690 vL~~isl-~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eN 768 (1560)
-|+.+=- -+++|+.+.|.|++|+|||+++.-++.-..-..+ .+.|+.-+-. ...+.++
T Consensus 14 ~LD~~l~GGi~~gsl~li~G~pGsGKT~l~~qia~~~~~~~~-------------------~~~~is~e~~--~~~~~~~ 72 (242)
T d1tf7a2 14 RLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKE-------------------RAILFAYEES--RAQLLRN 72 (242)
T ss_dssp HHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTC-------------------CEEEEESSSC--HHHHHHH
T ss_pred HHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCC-------------------CCCEEECCCC--HHHHHHH
T ss_conf 798845689869849999918999999999999999987232-------------------4411212679--9999999
Q ss_pred HHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCCCEEEEECCCCCCCHHHH
Q ss_conf 85499877899999999996018789709999874128999999968999999999861-49987998277889999999
Q 000406 769 VLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMI-KDPRILLLDEPTSALDSESE 847 (1560)
Q Consensus 769 i~~~~~~~~~~~i~~a~~~~~~~~~i~~lp~gl~t~ig~~g~~LSgGQkQrialARAll-~~~~iliLDE~ts~lD~~t~ 847 (1560)
..-.. ...++.. . .+.............. +...-.+.+++- .++++++.|-.++.......
T Consensus 73 ~~~~~--~~~~~~~----~-----------~~~~~~~~~~~~~~~~-~~~~~~i~~~i~~~~~~~vviDs~~~~~~~~~~ 134 (242)
T d1tf7a2 73 AYSWG--MDFEEME----R-----------QNLLKIVCAYPESAGL-EDHLQIIKSEINDFKPARIAIDSLSALARGVSN 134 (242)
T ss_dssp HHTTS--CCHHHHH----H-----------TTSEEECCCCGGGSCH-HHHHHHHHHHHHTTCCSEEEEECHHHHTSSSCH
T ss_pred HHHCC--CCHHHHH----H-----------CCCEEEEEEECCHHHH-HHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCH
T ss_conf 99829--9869985----4-----------5861799730001017-999999999998408853322043143048999
Q ss_pred HHHHHHH---HHH--CCCCEEEEEECCCC----------CCCC-CCEEEEEEC
Q ss_conf 9999999---980--59967999845955----------0012-798999919
Q 000406 848 SIVQQAI---DKI--SVGRTTIVIAHRLA----------TVKN-ANTIVVLDQ 884 (1560)
Q Consensus 848 ~~i~~~l---~~~--~~~~Tvi~itH~l~----------~i~~-~D~I~vl~~ 884 (1560)
..+.+.+ ... ..+.+++++.|.-. .+.. +|.|+.++.
T Consensus 135 ~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~~ 187 (242)
T d1tf7a2 135 NAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQY 187 (242)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCCCCCCEEEECCEEEEEEE
T ss_conf 99999999999999986983999985675125544577640464216999998
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=94.85 E-value=0.027 Score=30.55 Aligned_cols=157 Identities=15% Similarity=0.184 Sum_probs=75.1
Q ss_pred CCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCC----------CCCCCEEEECCEECCCCCHHHHHHCEEEECCCC
Q ss_conf 3001005999589399999599998889999996256----------898328999998557889888752318882788
Q 000406 1330 TVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFY----------DPNQGKVMIEGVDLREINVKWLRKQTALVGQEP 1399 (1560)
Q Consensus 1330 ~vL~nIsl~I~~Ge~vaIVG~SGSGKSTLi~LL~gl~----------~p~~G~I~IdG~dI~~i~~~~lR~~Ia~VpQd~ 1399 (1560)
.++.+ +.||+.+.|.|++|+||||++.-|+--. ....|.+++ +.-|.
T Consensus 21 ~li~G----~~pg~~~~i~G~~G~GKS~l~l~la~~ia~g~~~~~~~~~~~~~vl~-------------------~~~E~ 77 (274)
T d1nlfa_ 21 YVLPN----MVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIY-------------------LPAED 77 (274)
T ss_dssp EEETT----EETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEE-------------------EESSS
T ss_pred HHHCC----CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEE-------------------EECCC
T ss_conf 98689----55895899992899989999999999997699721112357873689-------------------85123
Q ss_pred CCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 89975689997149999999999999999928999980999830200289997795799999999998159978998578
Q 000406 1400 ALFAGTIRDNIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEA 1479 (1560)
Q Consensus 1400 ~LF~gTIreNI~~g~~~~sd~eI~~al~~a~l~d~I~~LP~GldT~Ige~G~~LSGGQkQRLaLARALL~~p~ILILDEa 1479 (1560)
....+.+.+.--....+.++....... +. +....+... .-.-......+ +.-..+++++|+|--
T Consensus 78 --~~~~~~~Rl~~~~~~~~~~~~~~~~~~------~~-----~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~lvviD~l 141 (274)
T d1nlfa_ 78 --PPTAIHHRLHALGAHLSAEERQAVADG------LL-----IQPLIGSLP--NIMAPEWFDGL-KRAAEGRRLMVLDTL 141 (274)
T ss_dssp --CHHHHHHHHHHHHTTSCHHHHHHHHHH------EE-----ECCCTTSCC--CTTSHHHHHHH-HHHHTTCSEEEEECG
T ss_pred --HHHHHHHHHHHHHHCCCHHHHHCCCCC------CE-----ECCCCCCCC--HHHHHHHHHHH-HHHCCCCCEEECCCH
T ss_conf --499999999998623686665312333------23-----214567420--35789999998-875267658962813
Q ss_pred CCCC-----CHHHHHHHHHHHHHHC--CCCEEEEEECCHH------------------HH-HHCCEEEEEEC
Q ss_conf 8587-----9999999999999834--8965999826957------------------78-62388999969
Q 000406 1480 SSAL-----DLESEKHVQDALRKVS--KRATTIVVAHRLS------------------TI-REANMIAVVRD 1525 (1560)
Q Consensus 1480 TSaL-----D~~tE~~I~~~L~~~~--~~~TVIvIaHRls------------------ti-~~aDrIiVL~~ 1525 (1560)
++.. |......+...|+.+. .++++|+|.|--. .+ ..+|.++.|..
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~~K~~~~~~~~~~~~~~~Gssai~~~a~~v~~l~r 213 (274)
T d1nlfa_ 142 RRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHASKGAAMMGAGDQQQASRGSSVLVDNIRWQSYLSS 213 (274)
T ss_dssp GGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CTGGGCSCEEEEEE
T ss_pred HHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCEEEEEEE
T ss_conf 542266523225689999887777644797540131005554446886653356427778742558999983
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.77 E-value=0.014 Score=32.94 Aligned_cols=34 Identities=26% Similarity=0.326 Sum_probs=28.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 8939999959999888999999625689832899
Q 000406 1341 GGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVM 1374 (1560)
Q Consensus 1341 ~Ge~vaIVG~SGSGKSTLi~LL~gl~~p~~G~I~ 1374 (1560)
+|++.+++|+||.|||||++.|.+-.....|+|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHCCCCC
T ss_conf 6980899788987788887730535550106842
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=94.62 E-value=0.01 Score=34.26 Aligned_cols=35 Identities=23% Similarity=0.368 Sum_probs=26.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 9989998569999837999999629899964899999
Q 000406 700 SSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDG 736 (1560)
Q Consensus 700 ~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g 736 (1560)
.|+.+.|+|++||||||+.+.|.+.+... -+.+++
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg~~--~~~~~~ 37 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPGVP--KVHFHS 37 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSSC--EEEECT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCC--EEEECH
T ss_conf 98599998899998899999999995999--799068
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=94.62 E-value=0.027 Score=30.65 Aligned_cols=41 Identities=34% Similarity=0.416 Sum_probs=32.6
Q ss_pred EEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 59995893999995999988899999962568983289999
Q 000406 1336 CLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIE 1376 (1560)
Q Consensus 1336 sl~I~~Ge~vaIVG~SGSGKSTLi~LL~gl~~p~~G~I~Id 1376 (1560)
...++.|..+.|+|++||||||+++.|+++.+|..=-|.|.
T Consensus 160 ~~~v~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivtiE 200 (323)
T d1g6oa_ 160 KDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIE 200 (323)
T ss_dssp HHHHHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEE
T ss_pred HHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEECC
T ss_conf 99998378889994035662578999865301456233113
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=94.35 E-value=0.088 Score=26.16 Aligned_cols=155 Identities=14% Similarity=0.090 Sum_probs=72.5
Q ss_pred CEEEEEE-EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE-EEECCEECCCCCHHHHHHCEEEECCCCCCCCCCHHH
Q ss_conf 0010059-99589399999599998889999996256898328-999998557889888752318882788899756899
Q 000406 1331 VLKDFCL-KVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGK-VMIEGVDLREINVKWLRKQTALVGQEPALFAGTIRD 1408 (1560)
Q Consensus 1331 vL~nIsl-~I~~Ge~vaIVG~SGSGKSTLi~LL~gl~~p~~G~-I~IdG~dI~~i~~~~lR~~Ia~VpQd~~LF~gTIre 1408 (1560)
-|+.+-- -+++|..+.|.|++|+|||+++.-++.-..-..+. +++. .+.+...+++
T Consensus 14 ~LD~~l~GGi~~gsl~li~G~pGsGKT~l~~qia~~~~~~~~~~~~is----~e~~~~~~~~------------------ 71 (242)
T d1tf7a2 14 RLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFA----YEESRAQLLR------------------ 71 (242)
T ss_dssp HHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEE----SSSCHHHHHH------------------
T ss_pred HHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEE----CCCCHHHHHH------------------
T ss_conf 798845689869849999918999999999999999987232441121----2679999999------------------
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCCCEEEEECCCCCCCHHH
Q ss_conf 971499999999999999999289999809998302002899977957999999999981-5997899857885879999
Q 000406 1409 NIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAIL-KGSRVLLLDEASSALDLES 1487 (1560)
Q Consensus 1409 NI~~g~~~~sd~eI~~al~~a~l~d~I~~LP~GldT~Ige~G~~LSGGQkQRLaLARALL-~~p~ILILDEaTSaLD~~t 1487 (1560)
+..-. ..+.+++ +. .+.-..+........ .+...-.+.+++- .+++++++|-.++.+...+
T Consensus 72 ~~~~~--~~~~~~~------------~~---~~~~~~~~~~~~~~~-~~~~~~~i~~~i~~~~~~~vviDs~~~~~~~~~ 133 (242)
T d1tf7a2 72 NAYSW--GMDFEEM------------ER---QNLLKIVCAYPESAG-LEDHLQIIKSEINDFKPARIAIDSLSALARGVS 133 (242)
T ss_dssp HHHTT--SCCHHHH------------HH---TTSEEECCCCGGGSC-HHHHHHHHHHHHHTTCCSEEEEECHHHHTSSSC
T ss_pred HHHHC--CCCHHHH------------HH---CCCEEEEEEECCHHH-HHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCC
T ss_conf 99982--9986998------------54---586179973000101-799999999999840885332204314304899
Q ss_pred HHHH---HHHHHHH--CCCCEEEEEECCHH----------HH-HHCCEEEEEEC
Q ss_conf 9999---9999983--48965999826957----------78-62388999969
Q 000406 1488 EKHV---QDALRKV--SKRATTIVVAHRLS----------TI-REANMIAVVRD 1525 (1560)
Q Consensus 1488 E~~I---~~~L~~~--~~~~TVIvIaHRls----------ti-~~aDrIiVL~~ 1525 (1560)
...+ ...+.+. ..+.|++++.|.-. .+ ..+|-|+.|+.
T Consensus 134 ~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~~ 187 (242)
T d1tf7a2 134 NNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQY 187 (242)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCCCCCCEEEECCEEEEEEE
T ss_conf 999999999999999986983999985675125544577640464216999998
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=94.20 E-value=0.027 Score=30.61 Aligned_cols=31 Identities=29% Similarity=0.274 Sum_probs=22.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 3999995999988899999962568983289999
Q 000406 1343 SMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIE 1376 (1560)
Q Consensus 1343 e~vaIVG~SGSGKSTLi~LL~gl~~p~~G~I~Id 1376 (1560)
+.|.|+|++||||||+++.|..-. .|...++
T Consensus 3 klIii~G~pGsGKTTla~~L~~~~---~~~~~~~ 33 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAKN---PGFYNIN 33 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS---TTEEEEC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC---CCCEEEC
T ss_conf 799998999999999999999957---9979960
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.18 E-value=0.12 Score=25.08 Aligned_cols=109 Identities=17% Similarity=0.244 Sum_probs=62.6
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEEECCCCCCCCCHHHHHHCCCCCC
Q ss_conf 74299899985699998379999996298999648999995267865887735489990477576666899985499877
Q 000406 697 VIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENA 776 (1560)
Q Consensus 697 ~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~~~~ 776 (1560)
.+++..-+.+.||+|+|||++++.+.+.... .+-++.
T Consensus 37 g~~~~~giLL~Gp~GtGKT~l~~ala~~~~~----------------------~~~~~~--------------------- 73 (265)
T d1r7ra3 37 GMTPSKGVLFYGPPGCGKTLLAKAIANECQA----------------------NFISIK--------------------- 73 (265)
T ss_dssp CCCCCCEEEEBCCTTSSHHHHHHHHHHHTTC----------------------EEEEEC---------------------
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHHCC----------------------CEEEEE---------------------
T ss_conf 9998875788789987630477887877189----------------------479988---------------------
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHH----------H
Q ss_conf 899999999996018789709999874128999999968999999999861499879982778899999----------9
Q 000406 777 TMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSE----------S 846 (1560)
Q Consensus 777 ~~~~i~~a~~~~~~~~~i~~lp~gl~t~ig~~g~~LSgGQkQrialARAll~~~~iliLDE~ts~lD~~----------t 846 (1560)
..++... ..| ...++-+-.+.+|-...|.|+++||.-+-.... .
T Consensus 74 -------------~~~l~~~-------~~~------~~~~~l~~~f~~A~~~~p~il~ideid~l~~~~~~~~~~~~~~~ 127 (265)
T d1r7ra3 74 -------------GPELLTM-------WFG------ESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAA 127 (265)
T ss_dssp -------------HHHHHTS-------CTT------THHHHHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHH
T ss_pred -------------HHHHHHC-------CCC------CHHHHHHHHHHHHHHCCCCCEEHHHHHHCCCCCCCCCCCCCHHH
T ss_conf -------------7995253-------165------15899999999998639843568754632455787678873799
Q ss_pred HHHHHHHHHHHC-----CCCEEEEEECCCCCCC
Q ss_conf 999999999805-----9967999845955001
Q 000406 847 ESIVQQAIDKIS-----VGRTTIVIAHRLATVK 874 (1560)
Q Consensus 847 ~~~i~~~l~~~~-----~~~Tvi~itH~l~~i~ 874 (1560)
++.+...+..+. .+.-+|..|++.+.+.
T Consensus 128 ~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 160 (265)
T d1r7ra3 128 DRVINQILTEMDGMSTKKNVFIIGATNRPDIID 160 (265)
T ss_dssp HHHHHHHHHTCC------CCEEEECCBSCTTTS
T ss_pred HHHHHHHHHHHHCCCCCCCEEEEEECCCCHHCC
T ss_conf 999999999962867779989999179922279
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.07 E-value=0.018 Score=32.11 Aligned_cols=27 Identities=19% Similarity=0.277 Sum_probs=24.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 998999856999983799999962989
Q 000406 700 SSKTLALVGTSGGGKSTVFALIERFYD 726 (1560)
Q Consensus 700 ~G~~~aivG~sGsGKSTl~~ll~g~~~ 726 (1560)
.|..+.|+||||+||+||.+.|+..++
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 980999999999999999999986398
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=94.00 E-value=0.019 Score=31.96 Aligned_cols=27 Identities=19% Similarity=0.233 Sum_probs=20.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 299899985699998379999996298
Q 000406 699 PSSKTLALVGTSGGGKSTVFALIERFY 725 (1560)
Q Consensus 699 ~~G~~~aivG~sGsGKSTl~~ll~g~~ 725 (1560)
.+|..+.|+|.+||||||+.+.|...+
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 997699988999999999999999998
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.99 E-value=0.13 Score=24.80 Aligned_cols=26 Identities=31% Similarity=0.385 Sum_probs=21.0
Q ss_pred ECCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 42998999856999983799999962
Q 000406 698 IPSSKTLALVGTSGGGKSTVFALIER 723 (1560)
Q Consensus 698 i~~G~~~aivG~sGsGKSTl~~ll~g 723 (1560)
-+.-+.+.++|.+||||||+++-++.
T Consensus 11 ~~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 11 SPNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp CSSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 99998999989999989999999997
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=93.90 E-value=0.012 Score=33.52 Aligned_cols=24 Identities=29% Similarity=0.289 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999856999983799999962989
Q 000406 703 TLALVGTSGGGKSTVFALIERFYD 726 (1560)
Q Consensus 703 ~~aivG~sGsGKSTl~~ll~g~~~ 726 (1560)
.++|+|++|||||||++-|.+.+.
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~ 27 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALC 27 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899991899989999999999999
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=93.85 E-value=0.047 Score=28.50 Aligned_cols=23 Identities=39% Similarity=0.460 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99985699998379999996298
Q 000406 703 TLALVGTSGGGKSTVFALIERFY 725 (1560)
Q Consensus 703 ~~aivG~sGsGKSTl~~ll~g~~ 725 (1560)
++||+|++|+|||||++.|++.-
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999997787
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.68 E-value=0.00023 Score=48.46 Aligned_cols=31 Identities=19% Similarity=0.281 Sum_probs=18.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 9998569999837999999629899964899
Q 000406 703 TLALVGTSGGGKSTVFALIERFYDPTKGLIT 733 (1560)
Q Consensus 703 ~~aivG~sGsGKSTl~~ll~g~~~~~~G~I~ 733 (1560)
.+.|+|++|+|||||++.+.+.+....+.+.
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~ 33 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVD 33 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTTCCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEE
T ss_conf 9999889997199999999999997799799
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.57 E-value=0.019 Score=31.90 Aligned_cols=27 Identities=37% Similarity=0.474 Sum_probs=24.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 939999959999888999999625689
Q 000406 1342 GSMVALVGGSGSGKSTVIWLIQRFYDP 1368 (1560)
Q Consensus 1342 Ge~vaIVG~SGSGKSTLi~LL~gl~~p 1368 (1560)
|..+.|+||||||||||++.|...++.
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~ 28 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPN 28 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 749999899999999999999845899
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.45 E-value=0.15 Score=24.09 Aligned_cols=45 Identities=13% Similarity=0.363 Sum_probs=34.0
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCC
Q ss_conf 9987998277889999999999999998059967999845955001
Q 000406 829 DPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVK 874 (1560)
Q Consensus 829 ~~~iliLDE~ts~lD~~t~~~i~~~l~~~~~~~Tvi~itH~l~~i~ 874 (1560)
+..++++||+-. +.......+.+.+.........|+++++.+.+.
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~~i~ 175 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSPII 175 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSC
T ss_pred CCEEEEECCCCC-CCCCCCHHHHCCCCCCCCCCCCEEEECCCCCHH
T ss_conf 724999424333-454311122100221356643000102111002
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.43 E-value=0.15 Score=24.06 Aligned_cols=29 Identities=21% Similarity=0.223 Sum_probs=24.7
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 95893999995999988899999962568
Q 000406 1339 VKGGSMVALVGGSGSGKSTVIWLIQRFYD 1367 (1560)
Q Consensus 1339 I~~Ge~vaIVG~SGSGKSTLi~LL~gl~~ 1367 (1560)
+++...+-+.||+|+|||++++.+++.+.
T Consensus 38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 38 MTPSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 99887578878998763047788787718
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.42 E-value=0.15 Score=24.05 Aligned_cols=88 Identities=24% Similarity=0.229 Sum_probs=52.6
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCEEEECCCCCCCCCCHHHHHHCCCCCCCH
Q ss_conf 58939999959999888999999625689832899999855788988875231888278889975689997149999999
Q 000406 1340 KGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKASW 1419 (1560)
Q Consensus 1340 ~~Ge~vaIVG~SGSGKSTLi~LL~gl~~p~~G~I~IdG~dI~~i~~~~lR~~Ia~VpQd~~LF~gTIreNI~~g~~~~sd 1419 (1560)
++-+.+-++|+.||||||+++-++... |-+.|+ .+.++ +.
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~~~----~~~~i~--------~D~~~----------------------------~~ 51 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLVSA----GYVHVN--------RDTLG----------------------------SW 51 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTGGG----TCEEEE--------HHHHC----------------------------SH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHC----CCEEEC--------HHHHH----------------------------HH
T ss_conf 999899998999998999999999765----978976--------07777----------------------------88
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH-HHHHHHHCCCCCEEEEE
Q ss_conf 99999999992899998099983020028999779579999-99999981599789985
Q 000406 1420 AEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQR-IAIARAILKGSRVLLLD 1477 (1560)
Q Consensus 1420 ~eI~~al~~a~l~d~I~~LP~GldT~Ige~G~~LSGGQkQR-LaLARALL~~p~ILILD 1477 (1560)
..+.+.++. .|..|.+..+. .++++-.+|++ +.+|+..=.+..++.||
T Consensus 52 ~~~~~~~~~--------~l~~g~~vIiD--~t~~~~~~R~~~~~~a~~~~~~~~~v~l~ 100 (172)
T d1yj5a2 52 QRCVSSCQA--------ALRQGKRVVID--NTNPDVPSRARYIQCAKDAGVPCRCFNFC 100 (172)
T ss_dssp HHHHHHHHH--------HHHTTCCEEEE--SCCCSHHHHHHHHHHHHHHTCCEEEEEEC
T ss_pred HHHHHHHHH--------HHHCCCCCEEE--CCCCCHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 899999999--------99779995551--76799999999999998558887999948
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.21 E-value=0.023 Score=31.12 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999856999983799999962989
Q 000406 703 TLALVGTSGGGKSTVFALIERFYD 726 (1560)
Q Consensus 703 ~~aivG~sGsGKSTl~~ll~g~~~ 726 (1560)
.+||.|++|||||||++.|...+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999789887899999999999836
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=93.11 E-value=0.037 Score=29.41 Aligned_cols=28 Identities=29% Similarity=0.536 Sum_probs=24.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 2998999856999983799999962989
Q 000406 699 PSSKTLALVGTSGGGKSTVFALIERFYD 726 (1560)
Q Consensus 699 ~~G~~~aivG~sGsGKSTl~~ll~g~~~ 726 (1560)
|+|-.++|.|++||||||+.+.|..-+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 9988899982899988999999999858
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=93.04 E-value=0.041 Score=29.01 Aligned_cols=26 Identities=23% Similarity=0.408 Sum_probs=21.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 98999856999983799999962989
Q 000406 701 SKTLALVGTSGGGKSTVFALIERFYD 726 (1560)
Q Consensus 701 G~~~aivG~sGsGKSTl~~ll~g~~~ 726 (1560)
.+.+.|+|++||||||+++.|...+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 85999989999998999999999728
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=92.95 E-value=0.045 Score=28.70 Aligned_cols=35 Identities=34% Similarity=0.498 Sum_probs=27.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 8939999959999888999999625689832899999
Q 000406 1341 GGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEG 1377 (1560)
Q Consensus 1341 ~Ge~vaIVG~SGSGKSTLi~LL~gl~~p~~G~I~IdG 1377 (1560)
.|+.|.|+|++||||||+++.|.+.+... -+.+|+
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg~~--~~~~~~ 37 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPGVP--KVHFHS 37 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSSC--EEEECT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCC--EEEECH
T ss_conf 98599998899998899999999995999--799068
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.86 E-value=0.035 Score=29.57 Aligned_cols=46 Identities=20% Similarity=0.302 Sum_probs=30.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEEECCCCCCC
Q ss_conf 999856999983799999962989996489999952678658877354899904775766
Q 000406 703 TLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIGMVGQEPILFA 762 (1560)
Q Consensus 703 ~~aivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~ 762 (1560)
.+||.|++||||||+.+.|...+...... .....+.+++++.+...
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~~~~~--------------~~~~~~~vi~~D~yy~~ 49 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQNEVD--------------YRQKQVVILSQDSFYRV 49 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGGGSC--------------GGGCSEEEEEGGGGBCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCHHCCC--------------CCCCCEEEEECCCCCCC
T ss_conf 99998999787999999999996410134--------------57884399934653224
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=92.83 E-value=0.18 Score=23.40 Aligned_cols=29 Identities=24% Similarity=0.235 Sum_probs=23.7
Q ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 42998999856999983799999962989
Q 000406 698 IPSSKTLALVGTSGGGKSTVFALIERFYD 726 (1560)
Q Consensus 698 i~~G~~~aivG~sGsGKSTl~~ll~g~~~ 726 (1560)
+.+...+.+.||+|+|||++++.+...+.
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 42 GKIPKGVLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCCCHHHHHHHHHCC
T ss_conf 99888678668998882289999999829
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=92.82 E-value=0.044 Score=28.79 Aligned_cols=49 Identities=14% Similarity=0.339 Sum_probs=35.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEEECCCCCCCCCHHHH
Q ss_conf 999856999983799999962989996489999952678658877354899904775766668999
Q 000406 703 TLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILEN 768 (1560)
Q Consensus 703 ~~aivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eN 768 (1560)
.++|+|++||||||+.+.|...+.-..+ ..++..+++|.+..+...++.
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~~-----------------~~~v~~Is~D~F~~~~~~l~~ 130 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWPE-----------------HRRVELITTDGFLHPNQVLKE 130 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTT-----------------CCCEEEEEGGGGBCCHHHHHH
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCC-----------------CCCEEEEEEEEEECCCHHHHH
T ss_conf 9999689999876899999999730468-----------------996599952156898458888
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=92.81 E-value=0.03 Score=30.26 Aligned_cols=24 Identities=29% Similarity=0.555 Sum_probs=21.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 899985699998379999996298
Q 000406 702 KTLALVGTSGGGKSTVFALIERFY 725 (1560)
Q Consensus 702 ~~~aivG~sGsGKSTl~~ll~g~~ 725 (1560)
++++|+|++|||||||++.|...+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 289998999998999999999984
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=92.77 E-value=0.19 Score=23.33 Aligned_cols=25 Identities=28% Similarity=0.267 Sum_probs=15.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9399999599998889999996256
Q 000406 1342 GSMVALVGGSGSGKSTVIWLIQRFY 1366 (1560)
Q Consensus 1342 Ge~vaIVG~SGSGKSTLi~LL~gl~ 1366 (1560)
...+-+.||+|+|||++++.|++.+
T Consensus 45 ~~~iLL~GppGtGKT~la~~iA~~~ 69 (256)
T d1lv7a_ 45 PKGVLMVGPPGTGKTLLAKAIAGEA 69 (256)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHC
T ss_conf 8867866899888228999999982
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.75 E-value=0.029 Score=30.28 Aligned_cols=26 Identities=19% Similarity=0.148 Sum_probs=19.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 89998569999837999999629899
Q 000406 702 KTLALVGTSGGGKSTVFALIERFYDP 727 (1560)
Q Consensus 702 ~~~aivG~sGsGKSTl~~ll~g~~~~ 727 (1560)
+.++|+|.+|||||||+.-|.+.+..
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~ 27 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVR 27 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 09999809999899999999999986
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=92.73 E-value=0.012 Score=33.63 Aligned_cols=34 Identities=29% Similarity=0.348 Sum_probs=25.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 9989998569999837999999629899964899
Q 000406 700 SSKTLALVGTSGGGKSTVFALIERFYDPTKGLIT 733 (1560)
Q Consensus 700 ~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~I~ 733 (1560)
+|++++++|+||.|||||++.|.+......|.|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHHCCCC
T ss_conf 3564999877873487898751517676403555
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=92.56 E-value=0.042 Score=28.96 Aligned_cols=27 Identities=30% Similarity=0.418 Sum_probs=20.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 299899985699998379999996298
Q 000406 699 PSSKTLALVGTSGGGKSTVFALIERFY 725 (1560)
Q Consensus 699 ~~G~~~aivG~sGsGKSTl~~ll~g~~ 725 (1560)
..+..+.|+|++||||||+.+.|...+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 987189998999989899999999986
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=92.51 E-value=0.034 Score=29.74 Aligned_cols=49 Identities=16% Similarity=0.324 Sum_probs=35.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCEEEECCCCCCCCCCHHHH
Q ss_conf 999995999988899999962568983289999985578898887523188827888997568999
Q 000406 1344 MVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDN 1409 (1560)
Q Consensus 1344 ~vaIVG~SGSGKSTLi~LL~gl~~p~~G~I~IdG~dI~~i~~~~lR~~Ia~VpQd~~LF~gTIreN 1409 (1560)
.|||.|++||||||+.+.|..++.-..+ ...+..|++|.+..+...++.
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~~-----------------~~~v~~Is~D~F~~~~~~l~~ 130 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWPE-----------------HRRVELITTDGFLHPNQVLKE 130 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTT-----------------CCCEEEEEGGGGBCCHHHHHH
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCC-----------------CCCEEEEEEEEEECCCHHHHH
T ss_conf 9999689999876899999999730468-----------------996599952156898458888
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=92.50 E-value=0.042 Score=28.99 Aligned_cols=23 Identities=30% Similarity=0.323 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99985699998379999996298
Q 000406 703 TLALVGTSGGGKSTVFALIERFY 725 (1560)
Q Consensus 703 ~~aivG~sGsGKSTl~~ll~g~~ 725 (1560)
+++|+|++|+|||||++.|.|.-
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99998999987999999852987
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.42 E-value=0.00066 Score=44.52 Aligned_cols=162 Identities=12% Similarity=0.025 Sum_probs=81.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCEEEECCCCCCCCCCHHHHHHCC------CCC
Q ss_conf 39999959999888999999625689832899999855788988875231888278889975689997149------999
Q 000406 1343 SMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALG------NPK 1416 (1560)
Q Consensus 1343 e~vaIVG~SGSGKSTLi~LL~gl~~p~~G~I~IdG~dI~~i~~~~lR~~Ia~VpQd~~LF~gTIreNI~~g------~~~ 1416 (1560)
..|.|+|+.|+|||||++.+.+.+....+.+.+.+.+........+......+.|+...+.....++.... ...
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSRVGLEPPPGKRECRVGQYV 81 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEECCEEETTSSEEEEEEEETTSCEEEEEECCCCCCSSSCCEESSSSE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 69999889997199999999999997799799998455012221146541234330246654300103444143223110
Q ss_pred CCHHHHHHHHHHHHHHHHHHH-CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 999999999999928999980-9998302002899977957999999999981599789985788587999999999999
Q 000406 1417 ASWAEIEEAAEEAYIHKFISS-LPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESEKHVQDAL 1495 (1560)
Q Consensus 1417 ~sd~eI~~al~~a~l~d~I~~-LP~GldT~Ige~G~~LSGGQkQRLaLARALL~~p~ILILDEaTSaLD~~tE~~I~~~L 1495 (1560)
...+++...... ..+.+.. ...+.+..+.+.....+......+.+.+.++..++++++...+..-+.. ..+.+.+
T Consensus 82 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 157 (189)
T d2i3ba1 82 VDLTSFEQLALP--VLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPGTIILGTIPVPKGKP--LALVEEI 157 (189)
T ss_dssp ECHHHHHTTTTT--TTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCSSCCEEEECCCCCSSC--CTTHHHH
T ss_pred CCHHHHHHHHHH--HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCH--HHHHHHH
T ss_conf 037777778899--999998876218970686143333053599999999985468659996155577556--9999998
Q ss_pred HHHCCCCEEEEEEC
Q ss_conf 98348965999826
Q 000406 1496 RKVSKRATTIVVAH 1509 (1560)
Q Consensus 1496 ~~~~~~~TVIvIaH 1509 (1560)
.+ .++.+++.++.
T Consensus 158 ~~-~~~~~~~~lt~ 170 (189)
T d2i3ba1 158 RN-RKDVKVFNVTK 170 (189)
T ss_dssp HT-TCCSEEEECCS
T ss_pred HC-CCCCEEEEECH
T ss_conf 67-89974999786
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=92.31 E-value=0.05 Score=28.32 Aligned_cols=52 Identities=19% Similarity=0.247 Sum_probs=35.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE------------EECCEECCCCCHHHHHHCE
Q ss_conf 893999995999988899999962568983289------------9999855788988875231
Q 000406 1341 GGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV------------MIEGVDLREINVKWLRKQT 1392 (1560)
Q Consensus 1341 ~Ge~vaIVG~SGSGKSTLi~LL~gl~~p~~G~I------------~IdG~dI~~i~~~~lR~~I 1392 (1560)
.|..+.|+||||+||+||.+.|..-++-..-.. .+||+|..-++.+...+.+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p~~~~~~~is~TTR~~R~~E~~G~dY~Fvs~~~F~~~i 64 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMI 64 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCEEECHHHHHHHH
T ss_conf 9809999999999999999999863986684278887636788655432123343289999875
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=92.29 E-value=0.21 Score=22.87 Aligned_cols=46 Identities=17% Similarity=0.219 Sum_probs=32.3
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHH-HHHHC-CCCEEEEEECCCCCCC
Q ss_conf 9987998277889999999999999-99805-9967999845955001
Q 000406 829 DPRILLLDEPTSALDSESESIVQQA-IDKIS-VGRTTIVIAHRLATVK 874 (1560)
Q Consensus 829 ~~~iliLDE~ts~lD~~t~~~i~~~-l~~~~-~~~Tvi~itH~l~~i~ 874 (1560)
+..++|+||...+=++.....+..+ ++.+. .+.+++++||..+...
T Consensus 114 ~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~ 161 (224)
T d1ewqa2 114 ENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA 161 (224)
T ss_dssp TTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred CCCEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCEEEEEECHHHHH
T ss_conf 772785545456862332002588888888623761378652023332
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.26 E-value=0.071 Score=26.97 Aligned_cols=29 Identities=24% Similarity=0.483 Sum_probs=23.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf 99985699998379999996298999648
Q 000406 703 TLALVGTSGGGKSTVFALIERFYDPTKGL 731 (1560)
Q Consensus 703 ~~aivG~sGsGKSTl~~ll~g~~~~~~G~ 731 (1560)
.+||+|++|+|||||++.|.|.-.-..|.
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~~~~~~~ 86 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIGNEEEGA 86 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCC
T ss_conf 79998999997899999995888677756
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=92.23 E-value=0.22 Score=22.81 Aligned_cols=141 Identities=20% Similarity=0.270 Sum_probs=70.9
Q ss_pred CEEEEEEEEECCC----CCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHH--------CCCCCCC-CEEEECCEE
Q ss_conf 3999979999699----99865322202674299899985699998379999996--------2989996-489999952
Q 000406 672 KIEFKGVTFAYPS----RPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIE--------RFYDPTK-GLITLDGHD 738 (1560)
Q Consensus 672 ~i~~~~vsf~y~~----~~~~~vL~~isl~i~~G~~~aivG~sGsGKSTl~~ll~--------g~~~~~~-G~I~i~g~~ 738 (1560)
.+++++.. +|- ..+..+=+++++. +.+..+.|.|||.+||||+++.+. |.+-|.+ .++.+-+
T Consensus 11 ~l~i~~~r--HPlle~~~~~~~VpNdi~l~-~~~~~~iiTGpN~~GKSt~lk~i~l~~~laq~G~~VpA~~a~~~~~d-- 85 (234)
T d1wb9a2 11 GIRITEGR--HPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPID-- 85 (234)
T ss_dssp CEEEEEEC--CTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCC--
T ss_pred CEEEEEEE--CCEEECCCCCCCCCEEEEEC-CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEECCCEECCCCH--
T ss_conf 68999737--87797446998264057988-99539999546731368999987999999872976741766613442--
Q ss_pred CCCCCHHHHHCCEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 67865887735489990477576666899985499877899999999996018789709999874128999999968999
Q 000406 739 LKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQ 818 (1560)
Q Consensus 739 i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~~~~~i~~lp~gl~t~ig~~g~~LSgGQkQ 818 (1560)
+| +..-...|++.-+... -..|+.+.. ..+..
T Consensus 86 -----------~I--------~~~~~~~d~~~~~~S~-F~~E~~~~~------~il~~---------------------- 117 (234)
T d1wb9a2 86 -----------RI--------FTRVGAADDLASGRST-FMVEMTETA------NILHN---------------------- 117 (234)
T ss_dssp -----------EE--------EEEEC------------CHHHHHHHH------HHHHH----------------------
T ss_pred -----------HH--------EEEECCCCCCCCCHHH-HHHHHHHHH------HHHHH----------------------
T ss_conf -----------02--------3487467534365318-999999999------99974----------------------
Q ss_pred HHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHH-HHHHC--CCCEEEEEECCCCCC
Q ss_conf 99999986149987998277889999999999999-99805--996799984595500
Q 000406 819 RIALARAMIKDPRILLLDEPTSALDSESESIVQQA-IDKIS--VGRTTIVIAHRLATV 873 (1560)
Q Consensus 819 rialARAll~~~~iliLDE~ts~lD~~t~~~i~~~-l~~~~--~~~Tvi~itH~l~~i 873 (1560)
..+..++|+||...+=++.....+..+ +..+. .+..+++.||.....
T Consensus 118 --------~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~ 167 (234)
T d1wb9a2 118 --------ATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT 167 (234)
T ss_dssp --------CCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG
T ss_pred --------CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHH
T ss_conf --------54660885322235877456667898764543204544289852468776
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.21 E-value=0.22 Score=22.80 Aligned_cols=42 Identities=24% Similarity=0.411 Sum_probs=25.1
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHH
Q ss_conf 9978998578858799999999999998348965999826957
Q 000406 1470 GSRVLLLDEASSALDLESEKHVQDALRKVSKRATTIVVAHRLS 1512 (1560)
Q Consensus 1470 ~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~TVIvIaHRls 1512 (1560)
+.+++++||+-. |.......+.+.+.+.......|+++++++
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~ 172 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMS 172 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSC
T ss_pred CCEEEEECCCCC-CCCCCCHHHHCCCCCCCCCCCCEEEECCCC
T ss_conf 724999424333-454311122100221356643000102111
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=92.16 E-value=0.015 Score=32.82 Aligned_cols=34 Identities=21% Similarity=0.279 Sum_probs=29.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 8939999959999888999999625689832899
Q 000406 1341 GGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVM 1374 (1560)
Q Consensus 1341 ~Ge~vaIVG~SGSGKSTLi~LL~gl~~p~~G~I~ 1374 (1560)
+|++..++|+||.|||||++.|.+-..-..|+|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHHCCCC
T ss_conf 3564999877873487898751517676403555
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=91.99 E-value=0.057 Score=27.80 Aligned_cols=23 Identities=30% Similarity=0.345 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99985699998379999996298
Q 000406 703 TLALVGTSGGGKSTVFALIERFY 725 (1560)
Q Consensus 703 ~~aivG~sGsGKSTl~~ll~g~~ 725 (1560)
.++|+|++|+||||+++.|+|.-
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998999986999999985898
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=91.96 E-value=0.056 Score=27.86 Aligned_cols=28 Identities=25% Similarity=0.297 Sum_probs=25.1
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 5893999995999988899999962568
Q 000406 1340 KGGSMVALVGGSGSGKSTVIWLIQRFYD 1367 (1560)
Q Consensus 1340 ~~Ge~vaIVG~SGSGKSTLi~LL~gl~~ 1367 (1560)
++|-.|.|+|.+||||||+.+.|+.-+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9976999889999999999999999986
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.80 E-value=0.069 Score=27.09 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=21.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 98999856999983799999962989
Q 000406 701 SKTLALVGTSGGGKSTVFALIERFYD 726 (1560)
Q Consensus 701 G~~~aivG~sGsGKSTl~~ll~g~~~ 726 (1560)
...+.|+||||+||+||++.|+..++
T Consensus 3 ~k~ivl~Gpsg~GK~tl~~~L~~~~~ 28 (178)
T d1kgda_ 3 RKTLVLLGAHGVGRRHIKNTLITKHP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 77199999899999999999997097
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.78 E-value=0.023 Score=31.24 Aligned_cols=27 Identities=37% Similarity=0.473 Sum_probs=22.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 998999856999983799999962989
Q 000406 700 SSKTLALVGTSGGGKSTVFALIERFYD 726 (1560)
Q Consensus 700 ~G~~~aivG~sGsGKSTl~~ll~g~~~ 726 (1560)
+|..+.|+|++||||||+.+.|...+.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 996999889999999999999999997
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=91.76 E-value=0.074 Score=26.84 Aligned_cols=28 Identities=25% Similarity=0.426 Sum_probs=25.2
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 5893999995999988899999962568
Q 000406 1340 KGGSMVALVGGSGSGKSTVIWLIQRFYD 1367 (1560)
Q Consensus 1340 ~~Ge~vaIVG~SGSGKSTLi~LL~gl~~ 1367 (1560)
++|-.|.|.|++||||||+++.|..-+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 9988899982899988999999999858
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=91.73 E-value=0.052 Score=28.14 Aligned_cols=28 Identities=21% Similarity=0.259 Sum_probs=22.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 9899985699998379999996298999
Q 000406 701 SKTLALVGTSGGGKSTVFALIERFYDPT 728 (1560)
Q Consensus 701 G~~~aivG~sGsGKSTl~~ll~g~~~~~ 728 (1560)
.+.++|.|++||||||+++.|...+...
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~~ 28 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAMDNLRKE 28 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 9889998999989899999999999876
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=91.72 E-value=0.063 Score=27.42 Aligned_cols=32 Identities=28% Similarity=0.398 Sum_probs=24.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 89998569999837999999629899964899999
Q 000406 702 KTLALVGTSGGGKSTVFALIERFYDPTKGLITLDG 736 (1560)
Q Consensus 702 ~~~aivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g 736 (1560)
..+.|+|++||||||+++.|.+.+. +...+++
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~---~~~~~~~ 34 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD---NSAYIEG 34 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS---SEEEEEH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC---CCEEEEH
T ss_conf 0899989999998999999999809---9889830
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=91.61 E-value=0.13 Score=24.59 Aligned_cols=43 Identities=33% Similarity=0.407 Sum_probs=30.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC------------CCCCCEEEECCEECCCCC
Q ss_conf 9399999599998889999996256------------898328999998557889
Q 000406 1342 GSMVALVGGSGSGKSTVIWLIQRFY------------DPNQGKVMIEGVDLREIN 1384 (1560)
Q Consensus 1342 Ge~vaIVG~SGSGKSTLi~LL~gl~------------~p~~G~I~IdG~dI~~i~ 1384 (1560)
+=+|||+|++|+|||||++.|++-- .+..|.+.++|.++..++
T Consensus 8 ~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~d 62 (186)
T d1mkya2 8 AIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVD 62 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCEEECCCCCCCCCCEEEECCCCCEEEEEC
T ss_conf 8889999999999999999997787622422565433320012204992346523
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=91.48 E-value=0.024 Score=31.12 Aligned_cols=43 Identities=30% Similarity=0.278 Sum_probs=29.3
Q ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCCEEEECCEE
Q ss_conf 67429989998569999837999999629899--96489999952
Q 000406 696 LVIPSSKTLALVGTSGGGKSTVFALIERFYDP--TKGLITLDGHD 738 (1560)
Q Consensus 696 l~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~--~~G~I~i~g~~ 738 (1560)
+.=.+|..+-+.|.|||||||+.+.|...+.. ..-.+.+||-+
T Consensus 19 ~~~~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~ 63 (208)
T d1m7ga_ 19 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 63 (208)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred HHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHH
T ss_conf 858998699998999999899999999887774275089975367
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=91.40 E-value=0.067 Score=27.22 Aligned_cols=25 Identities=24% Similarity=0.275 Sum_probs=22.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999959999888999999625689
Q 000406 1344 MVALVGGSGSGKSTVIWLIQRFYDP 1368 (1560)
Q Consensus 1344 ~vaIVG~SGSGKSTLi~LL~gl~~p 1368 (1560)
.|||.|++||||||+++.|...+..
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~~ 48 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLRE 48 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 9997898878999999999998363
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.39 E-value=0.066 Score=27.25 Aligned_cols=23 Identities=35% Similarity=0.528 Sum_probs=19.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99856999983799999962989
Q 000406 704 LALVGTSGGGKSTVFALIERFYD 726 (1560)
Q Consensus 704 ~aivG~sGsGKSTl~~ll~g~~~ 726 (1560)
+.|+|||||||+||++.|+...+
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99989999998999999997488
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=91.24 E-value=0.076 Score=26.74 Aligned_cols=26 Identities=35% Similarity=0.548 Sum_probs=23.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 93999995999988899999962568
Q 000406 1342 GSMVALVGGSGSGKSTVIWLIQRFYD 1367 (1560)
Q Consensus 1342 Ge~vaIVG~SGSGKSTLi~LL~gl~~ 1367 (1560)
...|.|.|++||||||+++.|...+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 85999989999998999999999728
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=91.22 E-value=0.063 Score=27.41 Aligned_cols=23 Identities=30% Similarity=0.342 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99985699998379999996298
Q 000406 703 TLALVGTSGGGKSTVFALIERFY 725 (1560)
Q Consensus 703 ~~aivG~sGsGKSTl~~ll~g~~ 725 (1560)
++.|+|++||||||+.+.|...+
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 79898999999899999999997
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=90.98 E-value=0.1 Score=25.56 Aligned_cols=27 Identities=26% Similarity=0.491 Sum_probs=24.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 299899985699998379999996298
Q 000406 699 PSSKTLALVGTSGGGKSTVFALIERFY 725 (1560)
Q Consensus 699 ~~G~~~aivG~sGsGKSTl~~ll~g~~ 725 (1560)
|+|-.+.|+|+.||||||+.+.|...|
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 996389998999998899999999986
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=90.82 E-value=0.075 Score=26.76 Aligned_cols=24 Identities=33% Similarity=0.493 Sum_probs=20.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 899985699998379999996298
Q 000406 702 KTLALVGTSGGGKSTVFALIERFY 725 (1560)
Q Consensus 702 ~~~aivG~sGsGKSTl~~ll~g~~ 725 (1560)
..+.|+|++||||||+.+.|...+
T Consensus 3 k~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 3 RNIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 749998999999999999999996
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=90.79 E-value=0.082 Score=26.43 Aligned_cols=22 Identities=32% Similarity=0.359 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9998569999837999999629
Q 000406 703 TLALVGTSGGGKSTVFALIERF 724 (1560)
Q Consensus 703 ~~aivG~sGsGKSTl~~ll~g~ 724 (1560)
.++|+|++|+|||||++.|.|.
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998899999999689
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=90.78 E-value=0.083 Score=26.37 Aligned_cols=27 Identities=33% Similarity=0.378 Sum_probs=24.3
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 589399999599998889999996256
Q 000406 1340 KGGSMVALVGGSGSGKSTVIWLIQRFY 1366 (1560)
Q Consensus 1340 ~~Ge~vaIVG~SGSGKSTLi~LL~gl~ 1366 (1560)
+.+..+.|+|++||||||+++.|..-+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 987189998999989899999999986
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=90.72 E-value=0.3 Score=21.64 Aligned_cols=23 Identities=30% Similarity=0.355 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99985699998379999996298
Q 000406 703 TLALVGTSGGGKSTVFALIERFY 725 (1560)
Q Consensus 703 ~~aivG~sGsGKSTl~~ll~g~~ 725 (1560)
+++++|++|+|||||++.|+|.-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999999999999996888
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=90.70 E-value=0.041 Score=29.08 Aligned_cols=31 Identities=19% Similarity=0.171 Sum_probs=24.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 9999959999888999999625689832899
Q 000406 1344 MVALVGGSGSGKSTVIWLIQRFYDPNQGKVM 1374 (1560)
Q Consensus 1344 ~vaIVG~SGSGKSTLi~LL~gl~~p~~G~I~ 1374 (1560)
.++|+|++|||||||++-|.+.+....-++-
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~~g~~v~ 34 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCARGIRPG 34 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEE
T ss_conf 8999918999899999999999997797687
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.64 E-value=0.072 Score=26.91 Aligned_cols=23 Identities=35% Similarity=0.457 Sum_probs=19.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99856999983799999962989
Q 000406 704 LALVGTSGGGKSTVFALIERFYD 726 (1560)
Q Consensus 704 ~aivG~sGsGKSTl~~ll~g~~~ 726 (1560)
+.|+|||||||+||++.|...++
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~~ 25 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEHS 25 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99999999999999999997488
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=90.59 E-value=0.11 Score=25.44 Aligned_cols=23 Identities=35% Similarity=0.469 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99985699998379999996298
Q 000406 703 TLALVGTSGGGKSTVFALIERFY 725 (1560)
Q Consensus 703 ~~aivG~sGsGKSTl~~ll~g~~ 725 (1560)
+++++|++|+|||||++.|+|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999998999999996777
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=90.48 E-value=0.079 Score=26.60 Aligned_cols=26 Identities=31% Similarity=0.443 Sum_probs=21.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99899985699998379999996298
Q 000406 700 SSKTLALVGTSGGGKSTVFALIERFY 725 (1560)
Q Consensus 700 ~G~~~aivG~sGsGKSTl~~ll~g~~ 725 (1560)
+...++|+|+.||||||+.+.|..-|
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99489998999998899999999997
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.46 E-value=0.28 Score=21.80 Aligned_cols=21 Identities=29% Similarity=0.487 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999856999983799999962
Q 000406 703 TLALVGTSGGGKSTVFALIER 723 (1560)
Q Consensus 703 ~~aivG~sGsGKSTl~~ll~g 723 (1560)
+++++|.+|+|||||++-+.+
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899798999999970
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=90.32 E-value=0.13 Score=24.67 Aligned_cols=27 Identities=26% Similarity=0.395 Sum_probs=24.8
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 589399999599998889999996256
Q 000406 1340 KGGSMVALVGGSGSGKSTVIWLIQRFY 1366 (1560)
Q Consensus 1340 ~~Ge~vaIVG~SGSGKSTLi~LL~gl~ 1366 (1560)
|+|=++.|+||.||||||+.+.|+.-|
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 996389998999998899999999986
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=90.23 E-value=0.14 Score=24.50 Aligned_cols=23 Identities=35% Similarity=0.652 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99985699998379999996298
Q 000406 703 TLALVGTSGGGKSTVFALIERFY 725 (1560)
Q Consensus 703 ~~aivG~sGsGKSTl~~ll~g~~ 725 (1560)
.++|+|+.|||||||++.|++..
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~ 24 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYL 24 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89999189983999999999988
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=90.20 E-value=0.32 Score=21.30 Aligned_cols=47 Identities=15% Similarity=0.152 Sum_probs=32.3
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHH-HHHHC--CCCEEEEEECCHHHH
Q ss_conf 159978998578858799999999999-99834--896599982695778
Q 000406 1468 LKGSRVLLLDEASSALDLESEKHVQDA-LRKVS--KRATTIVVAHRLSTI 1514 (1560)
Q Consensus 1468 L~~p~ILILDEaTSaLD~~tE~~I~~~-L~~~~--~~~TVIvIaHRlsti 1514 (1560)
..+..++|+||.-.+-++..-..+-.+ +..+. .++.+++.||-....
T Consensus 118 ~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~ 167 (234)
T d1wb9a2 118 ATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT 167 (234)
T ss_dssp CCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG
T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHH
T ss_conf 54660885322235877456667898764543204544289852468776
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.12 E-value=0.076 Score=26.71 Aligned_cols=27 Identities=22% Similarity=0.486 Sum_probs=23.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 998999856999983799999962989
Q 000406 700 SSKTLALVGTSGGGKSTVFALIERFYD 726 (1560)
Q Consensus 700 ~G~~~aivG~sGsGKSTl~~ll~g~~~ 726 (1560)
++..++|-|+.||||||++++|...+.
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 998899987888779999999999973
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=90.03 E-value=0.13 Score=24.67 Aligned_cols=112 Identities=21% Similarity=0.256 Sum_probs=65.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE-EECCEECCCCCHHHHHCCEEEEECCCC--CCCCCHHHHHHCCCCC
Q ss_conf 2998999856999983799999962989996489-999952678658877354899904775--7666689998549987
Q 000406 699 PSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI-TLDGHDLKSLQVKWLRTQIGMVGQEPI--LFATSILENVLMGKEN 775 (1560)
Q Consensus 699 ~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~I-~i~g~~i~~~~~~~lr~~i~~v~Q~~~--lf~~ti~eNi~~~~~~ 775 (1560)
.++-.+.++||+||||||.+..++...+.....| ++. +|. .+++-.
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiE---------------------dPiE~~~~~~~---------- 204 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVE---------------------DPIEFDIDGIG---------- 204 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEE---------------------SSCCSCCSSSE----------
T ss_pred HHHCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEEC---------------------CCCCCCCCCCC----------
T ss_conf 41054898767877744779998666257874699962---------------------67434567887----------
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 78999999999960187897099998741289999999689999999998614998799827788999999999999999
Q 000406 776 ATMKEAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAID 855 (1560)
Q Consensus 776 ~~~~~i~~a~~~~~~~~~i~~lp~gl~t~ig~~g~~LSgGQkQrialARAll~~~~iliLDE~ts~lD~~t~~~i~~~l~ 855 (1560)
...+.+ ..|+.---+|..+|-++|+|++..|.. |.++.... ++
T Consensus 205 --------------------------q~~v~~-----~~~~~~~~~l~~~lR~dPDvi~igEiR---d~~ta~~a---~~ 247 (401)
T d1p9ra_ 205 --------------------------QTQVNP-----RVDMTFARGLRAILRQDPDVVMVGEIR---DLETAQIA---VQ 247 (401)
T ss_dssp --------------------------EEECBG-----GGTBCHHHHHHHHGGGCCSEEEESCCC---SHHHHHHH---HH
T ss_pred --------------------------EEEECC-----CCCCCHHHHHHHHHHHCCCEEEECCCC---CHHHHHHH---HH
T ss_conf --------------------------026558-----767799999999984138889845768---75999999---99
Q ss_pred HHCCCCEEEEEECCCCCCCCCCE
Q ss_conf 80599679998459550012798
Q 000406 856 KISVGRTTIVIAHRLATVKNANT 878 (1560)
Q Consensus 856 ~~~~~~Tvi~itH~l~~i~~~D~ 878 (1560)
....|+.|+..-|--+.+.-.+|
T Consensus 248 aa~tGhlV~tTlHa~~a~~~~~R 270 (401)
T d1p9ra_ 248 ASLTGHLVMSTLHTNTAVGAVTR 270 (401)
T ss_dssp HHHTTCEEEEEECCSSSHHHHHH
T ss_pred HHHCCCEEEEEECCCCHHHHHHH
T ss_conf 97249858998336766766543
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.03 E-value=0.11 Score=25.22 Aligned_cols=48 Identities=27% Similarity=0.436 Sum_probs=32.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCEEEECCCCCCCCCC
Q ss_conf 99999599998889999996256898328999998557889888752318882788899756
Q 000406 1344 MVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQEPALFAGT 1405 (1560)
Q Consensus 1344 ~vaIVG~SGSGKSTLi~LL~gl~~p~~G~I~IdG~dI~~i~~~~lR~~Ia~VpQd~~LF~gT 1405 (1560)
.|||.|++||||||+.+.|...+.-.. + ..-...+.+++||.+....+
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~~~------------~--~~~~~~~~vi~~D~yy~~~~ 51 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQNE------------V--DYRQKQVVILSQDSFYRVLT 51 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGGG------------S--CGGGCSEEEEEGGGGBCCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCHHC------------C--CCCCCCEEEEECCCCCCCCC
T ss_conf 999989997879999999999964101------------3--45788439993465322440
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=90.03 E-value=0.12 Score=24.98 Aligned_cols=63 Identities=13% Similarity=0.118 Sum_probs=33.6
Q ss_pred CHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHH-HHHHHHHHHHHHCCCCEEEEEECCCCCCCC
Q ss_conf 968999999999861499879982778899999-999999999980599679998459550012
Q 000406 813 SGGQKQRIALARAMIKDPRILLLDEPTSALDSE-SESIVQQAIDKISVGRTTIVIAHRLATVKN 875 (1560)
Q Consensus 813 SgGQkQrialARAll~~~~iliLDE~ts~lD~~-t~~~i~~~l~~~~~~~Tvi~itH~l~~i~~ 875 (1560)
...+...+..+...++++.+++++=.-..-+.. ......+.+.....++.+|+|....+....
T Consensus 64 ~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~iilv~NK~Dl~~~ 127 (161)
T d2gj8a1 64 DEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGE 127 (161)
T ss_dssp SHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCC
T ss_pred CCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCHHHHHHH
T ss_conf 5202478999999987413320110256542034555444555420141010204654443355
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=89.99 E-value=0.08 Score=26.54 Aligned_cols=25 Identities=32% Similarity=0.620 Sum_probs=22.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3999995999988899999962568
Q 000406 1343 SMVALVGGSGSGKSTVIWLIQRFYD 1367 (1560)
Q Consensus 1343 e~vaIVG~SGSGKSTLi~LL~gl~~ 1367 (1560)
.+|+|+|++|+|||||++.|...+.
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~~ 32 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVFN 32 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 2899989999989999999999849
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=89.99 E-value=0.34 Score=21.16 Aligned_cols=47 Identities=19% Similarity=0.256 Sum_probs=33.9
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCHHHHH
Q ss_conf 5997899857885879999999999999834--8965999826957786
Q 000406 1469 KGSRVLLLDEASSALDLESEKHVQDALRKVS--KRATTIVVAHRLSTIR 1515 (1560)
Q Consensus 1469 ~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~--~~~TVIvIaHRlsti~ 1515 (1560)
.+..++|+||.-.+-|+..-..+-.++-+.. .+.+++++||..+...
T Consensus 113 ~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~ 161 (224)
T d1ewqa2 113 TENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA 161 (224)
T ss_dssp CTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred CCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCEEEEEECHHHHH
T ss_conf 9772785545456862332002588888888623761378652023332
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=89.83 E-value=0.1 Score=25.65 Aligned_cols=22 Identities=36% Similarity=0.376 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999888999999625
Q 000406 1344 MVALVGGSGSGKSTVIWLIQRF 1365 (1560)
Q Consensus 1344 ~vaIVG~SGSGKSTLi~LL~gl 1365 (1560)
+|+|+|++|+|||||++.|.|.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHCCC
T ss_conf 9999899998799999985298
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.81 E-value=0.11 Score=25.25 Aligned_cols=26 Identities=23% Similarity=0.406 Sum_probs=21.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99899985699998379999996298
Q 000406 700 SSKTLALVGTSGGGKSTVFALIERFY 725 (1560)
Q Consensus 700 ~G~~~aivG~sGsGKSTl~~ll~g~~ 725 (1560)
+-..+.|+||.||||||+++.|..-|
T Consensus 7 ~~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 7 QVSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 97289998999999899999999985
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=89.68 E-value=0.074 Score=26.84 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9998569999837999999629
Q 000406 703 TLALVGTSGGGKSTVFALIERF 724 (1560)
Q Consensus 703 ~~aivG~sGsGKSTl~~ll~g~ 724 (1560)
.+||+|++++|||||++.|.|-
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 6999899998799999999689
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.59 E-value=0.17 Score=23.65 Aligned_cols=41 Identities=5% Similarity=0.191 Sum_probs=21.6
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
Q ss_conf 998799827788999999999999999805996799984595500
Q 000406 829 DPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATV 873 (1560)
Q Consensus 829 ~~~iliLDE~ts~lD~~t~~~i~~~l~~~~~~~Tvi~itH~l~~i 873 (1560)
+..++|+|-. ..+. +.+..+.+.+++. ++-+++|-...+..
T Consensus 135 ~~d~~l~~~~-~~~~-~~d~~l~~~l~~~--~k~~~~V~nK~D~~ 175 (400)
T d1tq4a_ 135 EYDFFIIISA-TRFK-KNDIDIAKAISMM--KKEFYFVRTKVDSD 175 (400)
T ss_dssp GCSEEEEEES-SCCC-HHHHHHHHHHHHT--TCEEEEEECCHHHH
T ss_pred CCEEEEEECC-CCCC-HHHHHHHHHHHHC--CCCEEEEEECCCCC
T ss_conf 2659999658-8887-8899999999976--99879997086321
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=89.59 E-value=0.14 Score=24.50 Aligned_cols=24 Identities=33% Similarity=0.544 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999856999983799999962989
Q 000406 703 TLALVGTSGGGKSTVFALIERFYD 726 (1560)
Q Consensus 703 ~~aivG~sGsGKSTl~~ll~g~~~ 726 (1560)
.++|-||+||||||+.++|..-+.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999789998798999999999969
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.57 E-value=0.13 Score=24.72 Aligned_cols=22 Identities=18% Similarity=0.505 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9998569999837999999629
Q 000406 703 TLALVGTSGGGKSTVFALIERF 724 (1560)
Q Consensus 703 ~~aivG~sGsGKSTl~~ll~g~ 724 (1560)
+++|+|++|+|||||++.|.+-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998899999999679
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.57 E-value=0.12 Score=24.99 Aligned_cols=26 Identities=15% Similarity=0.234 Sum_probs=21.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 93999995999988899999962568
Q 000406 1342 GSMVALVGGSGSGKSTVIWLIQRFYD 1367 (1560)
Q Consensus 1342 Ge~vaIVG~SGSGKSTLi~LL~gl~~ 1367 (1560)
...+.|+||||+||+||.+.|+..++
T Consensus 3 ~k~ivl~Gpsg~GK~tl~~~L~~~~~ 28 (178)
T d1kgda_ 3 RKTLVLLGAHGVGRRHIKNTLITKHP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 77199999899999999999997097
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=89.52 E-value=0.14 Score=24.43 Aligned_cols=22 Identities=32% Similarity=0.386 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9998569999837999999629
Q 000406 703 TLALVGTSGGGKSTVFALIERF 724 (1560)
Q Consensus 703 ~~aivG~sGsGKSTl~~ll~g~ 724 (1560)
+++|+|.+|+|||||++.|.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999979999899999999589
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=89.35 E-value=0.13 Score=24.71 Aligned_cols=22 Identities=41% Similarity=0.703 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9998569999837999999629
Q 000406 703 TLALVGTSGGGKSTVFALIERF 724 (1560)
Q Consensus 703 ~~aivG~sGsGKSTl~~ll~g~ 724 (1560)
.+||+|.+||||||+++.|..+
T Consensus 5 IIgitG~~gSGKstva~~l~~~ 26 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRSW 26 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999898877899999999987
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=89.26 E-value=0.1 Score=25.66 Aligned_cols=32 Identities=31% Similarity=0.438 Sum_probs=25.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 39999959999888999999625689832899999
Q 000406 1343 SMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEG 1377 (1560)
Q Consensus 1343 e~vaIVG~SGSGKSTLi~LL~gl~~p~~G~I~IdG 1377 (1560)
..+.|+|++||||||+++.|++.+. +...++|
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~---~~~~~~~ 34 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD---NSAYIEG 34 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS---SEEEEEH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC---CCEEEEH
T ss_conf 0899989999998999999999809---9889830
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=89.12 E-value=0.11 Score=25.24 Aligned_cols=24 Identities=25% Similarity=0.242 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995999988899999962568
Q 000406 1344 MVALVGGSGSGKSTVIWLIQRFYD 1367 (1560)
Q Consensus 1344 ~vaIVG~SGSGKSTLi~LL~gl~~ 1367 (1560)
+|.|+|++||||||+++.|+.-+.
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l~ 29 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKSG 29 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 798989999998999999999979
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=89.04 E-value=0.14 Score=24.49 Aligned_cols=23 Identities=26% Similarity=0.328 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599998889999996256
Q 000406 1344 MVALVGGSGSGKSTVIWLIQRFY 1366 (1560)
Q Consensus 1344 ~vaIVG~SGSGKSTLi~LL~gl~ 1366 (1560)
+|+|+|++|+||||+++.|+|--
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998999986999999985898
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=88.99 E-value=0.082 Score=26.43 Aligned_cols=27 Identities=22% Similarity=0.111 Sum_probs=23.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 399999599998889999996256898
Q 000406 1343 SMVALVGGSGSGKSTVIWLIQRFYDPN 1369 (1560)
Q Consensus 1343 e~vaIVG~SGSGKSTLi~LL~gl~~p~ 1369 (1560)
..++|+|++|||||||+.-|.+.+...
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~ 28 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVRE 28 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHC
T ss_conf 099998099998999999999999867
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.97 E-value=0.06 Score=27.59 Aligned_cols=27 Identities=37% Similarity=0.511 Sum_probs=24.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 893999995999988899999962568
Q 000406 1341 GGSMVALVGGSGSGKSTVIWLIQRFYD 1367 (1560)
Q Consensus 1341 ~Ge~vaIVG~SGSGKSTLi~LL~gl~~ 1367 (1560)
+|-.|.|+|++||||||+++.|...+.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 996999889999999999999999997
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.93 E-value=0.12 Score=24.86 Aligned_cols=24 Identities=21% Similarity=0.486 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999856999983799999962989
Q 000406 703 TLALVGTSGGGKSTVFALIERFYD 726 (1560)
Q Consensus 703 ~~aivG~sGsGKSTl~~ll~g~~~ 726 (1560)
.+++||.+||||||+++.|.+.+.
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 999989999999999999999997
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=88.90 E-value=0.39 Score=20.56 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999856999983799999962
Q 000406 703 TLALVGTSGGGKSTVFALIER 723 (1560)
Q Consensus 703 ~~aivG~sGsGKSTl~~ll~g 723 (1560)
++.++|..|+|||||++-+..
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899588999999972
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=88.83 E-value=0.09 Score=26.11 Aligned_cols=21 Identities=38% Similarity=0.619 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998569999837999999629
Q 000406 704 LALVGTSGGGKSTVFALIERF 724 (1560)
Q Consensus 704 ~aivG~sGsGKSTl~~ll~g~ 724 (1560)
+||+|++++|||||++.|.|.
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899999899999999689
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=88.68 E-value=0.16 Score=23.85 Aligned_cols=22 Identities=23% Similarity=0.466 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9998569999837999999629
Q 000406 703 TLALVGTSGGGKSTVFALIERF 724 (1560)
Q Consensus 703 ~~aivG~sGsGKSTl~~ll~g~ 724 (1560)
+++|||.+|+|||||++.+.+-
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998999999999679
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=88.65 E-value=0.18 Score=23.40 Aligned_cols=21 Identities=33% Similarity=0.561 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999856999983799999962
Q 000406 703 TLALVGTSGGGKSTVFALIER 723 (1560)
Q Consensus 703 ~~aivG~sGsGKSTl~~ll~g 723 (1560)
.+||+|..||||||+++.+..
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999888887889999999998
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.65 E-value=0.38 Score=20.68 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=18.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 8999856999983799999962
Q 000406 702 KTLALVGTSGGGKSTVFALIER 723 (1560)
Q Consensus 702 ~~~aivG~sGsGKSTl~~ll~g 723 (1560)
-+++++|.+|+|||||++.+.+
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 3899999899298999999971
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=88.61 E-value=0.12 Score=25.09 Aligned_cols=27 Identities=19% Similarity=0.391 Sum_probs=22.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 299899985699998379999996298
Q 000406 699 PSSKTLALVGTSGGGKSTVFALIERFY 725 (1560)
Q Consensus 699 ~~G~~~aivG~sGsGKSTl~~ll~g~~ 725 (1560)
++.-+++|+|++|+|||||++.|.+-.
T Consensus 11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 11 KKTGKLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 777789999999989899999996788
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=88.59 E-value=0.41 Score=20.40 Aligned_cols=29 Identities=21% Similarity=0.409 Sum_probs=20.3
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 74299899985699998379999996298
Q 000406 697 VIPSSKTLALVGTSGGGKSTVFALIERFY 725 (1560)
Q Consensus 697 ~i~~G~~~aivG~sGsGKSTl~~ll~g~~ 725 (1560)
.-.+...+++|||+|+||||.+.-|...+
T Consensus 7 ~~~~p~vi~lvGptGvGKTTTiAKLAa~~ 35 (213)
T d1vmaa2 7 PPEPPFVIMVVGVNGTGKTTSCGKLAKMF 35 (213)
T ss_dssp CSSSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99999899998999998899999999999
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.56 E-value=0.12 Score=24.86 Aligned_cols=44 Identities=32% Similarity=0.537 Sum_probs=29.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC-------------CCCCEEEECCEECCCCCHHHHHH
Q ss_conf 99995999988899999962568-------------98328999998557889888752
Q 000406 1345 VALVGGSGSGKSTVIWLIQRFYD-------------PNQGKVMIEGVDLREINVKWLRK 1390 (1560)
Q Consensus 1345 vaIVG~SGSGKSTLi~LL~gl~~-------------p~~G~I~IdG~dI~~i~~~~lR~ 1390 (1560)
|.|+|||||||+||++.|+.-++ |..|++ +|+|..-++.+...+
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~E~--~g~dy~fvs~~~f~~ 60 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSVDEFKS 60 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCEEECSCCCTTCC--BTTTEEECCHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCC--CCCCCEECCHHHHHH
T ss_conf 999899999989999999974886624777642689999975--784324324889999
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=88.50 E-value=0.15 Score=24.20 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=19.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 899985699998379999996298
Q 000406 702 KTLALVGTSGGGKSTVFALIERFY 725 (1560)
Q Consensus 702 ~~~aivG~sGsGKSTl~~ll~g~~ 725 (1560)
+.+.++|++||||||+.++|...+
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 988998899998899999999994
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=88.49 E-value=0.15 Score=24.24 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99985699998379999996298
Q 000406 703 TLALVGTSGGGKSTVFALIERFY 725 (1560)
Q Consensus 703 ~~aivG~sGsGKSTl~~ll~g~~ 725 (1560)
.+.|+|++||||||+.+.|...+
T Consensus 2 ~I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
T ss_conf 39998999998899999999983
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.48 E-value=0.26 Score=22.06 Aligned_cols=28 Identities=14% Similarity=0.179 Sum_probs=24.2
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 7429989998569999837999999629
Q 000406 697 VIPSSKTLALVGTSGGGKSTVFALIERF 724 (1560)
Q Consensus 697 ~i~~G~~~aivG~sGsGKSTl~~ll~g~ 724 (1560)
-+++|+.+.|.|++|||||+|+.-++.-
T Consensus 19 Gi~~G~v~~i~G~~GsGKT~l~l~la~~ 46 (242)
T d1n0wa_ 19 GIETGSITEMFGEFRTGKTQICHTLAVT 46 (242)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 9859979999958999999999999999
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.33 E-value=0.42 Score=20.29 Aligned_cols=29 Identities=38% Similarity=0.560 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC-C----CCCCCCE
Q ss_conf 999856999983799999962-9----8999648
Q 000406 703 TLALVGTSGGGKSTVFALIER-F----YDPTKGL 731 (1560)
Q Consensus 703 ~~aivG~sGsGKSTl~~ll~g-~----~~~~~G~ 731 (1560)
+++++|.+|+|||||++-+.. . +.|+.|.
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~ 40 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIED 40 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 8999999997999999999739988545766452
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=88.33 E-value=0.17 Score=23.74 Aligned_cols=32 Identities=38% Similarity=0.484 Sum_probs=25.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 893999995999988899999962568983289999
Q 000406 1341 GGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIE 1376 (1560)
Q Consensus 1341 ~Ge~vaIVG~SGSGKSTLi~LL~gl~~p~~G~I~Id 1376 (1560)
+...|.|+||.||||||+++.|+.-| |-+.|+
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~~~----g~~~i~ 36 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVRDF----GWVHLS 36 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH----CCEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH----CCCEEC
T ss_conf 99489998999998899999999997----992672
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=88.25 E-value=0.39 Score=20.58 Aligned_cols=33 Identities=24% Similarity=0.212 Sum_probs=26.3
Q ss_pred CCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 3222026742998999856999983799999962
Q 000406 690 ILRSLNLVIPSSKTLALVGTSGGGKSTVFALIER 723 (1560)
Q Consensus 690 vL~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g 723 (1560)
.++.-.+.+ .|.-+.|+|+||+||||++..|..
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred EEEEEEEEE-CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 178999999-999999981899998999999998
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=88.22 E-value=0.18 Score=23.43 Aligned_cols=21 Identities=24% Similarity=0.490 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999856999983799999962
Q 000406 703 TLALVGTSGGGKSTVFALIER 723 (1560)
Q Consensus 703 ~~aivG~sGsGKSTl~~ll~g 723 (1560)
++.++|++|+|||||++-+.+
T Consensus 2 kivlvG~~~vGKSsLi~~l~~ 22 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKL 22 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 899999999898999999965
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=88.20 E-value=0.15 Score=24.14 Aligned_cols=24 Identities=33% Similarity=0.430 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995999988899999962568
Q 000406 1344 MVALVGGSGSGKSTVIWLIQRFYD 1367 (1560)
Q Consensus 1344 ~vaIVG~SGSGKSTLi~LL~gl~~ 1367 (1560)
.|.|+|++||||||+.++|+.-+.
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L~ 27 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQLN 27 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 499989999999999999999969
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=88.19 E-value=0.15 Score=24.07 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=21.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 899985699998379999996298
Q 000406 702 KTLALVGTSGGGKSTVFALIERFY 725 (1560)
Q Consensus 702 ~~~aivG~sGsGKSTl~~ll~g~~ 725 (1560)
-+++|.|..||||||++++|...+
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 199988999988899999999870
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.12 E-value=0.19 Score=23.34 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99985699998379999996298
Q 000406 703 TLALVGTSGGGKSTVFALIERFY 725 (1560)
Q Consensus 703 ~~aivG~sGsGKSTl~~ll~g~~ 725 (1560)
+++++|++|+|||||++.+.+-.
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=88.02 E-value=0.12 Score=25.13 Aligned_cols=32 Identities=19% Similarity=0.151 Sum_probs=26.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 39999959999888999999625689832899
Q 000406 1343 SMVALVGGSGSGKSTVIWLIQRFYDPNQGKVM 1374 (1560)
Q Consensus 1343 e~vaIVG~SGSGKSTLi~LL~gl~~p~~G~I~ 1374 (1560)
..|+|.|+.||||||+++.|...+.....++.
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~~ 33 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYK 33 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf 88999899998989999999999987699869
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.86 E-value=0.26 Score=22.06 Aligned_cols=29 Identities=17% Similarity=0.334 Sum_probs=25.0
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99589399999599998889999996256
Q 000406 1338 KVKGGSMVALVGGSGSGKSTVIWLIQRFY 1366 (1560)
Q Consensus 1338 ~I~~Ge~vaIVG~SGSGKSTLi~LL~gl~ 1366 (1560)
-+++|+.+.|.|++|+||||++.-++.-.
T Consensus 19 Gi~~G~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 19 GIETGSITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 98599799999589999999999999999
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.85 E-value=0.22 Score=22.70 Aligned_cols=28 Identities=21% Similarity=0.151 Sum_probs=24.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 2998999856999983799999962989
Q 000406 699 PSSKTLALVGTSGGGKSTVFALIERFYD 726 (1560)
Q Consensus 699 ~~G~~~aivG~sGsGKSTl~~ll~g~~~ 726 (1560)
++|.+++|.|+-||||||++++|...+.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9805999989988899999999999998
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=87.69 E-value=0.22 Score=22.80 Aligned_cols=23 Identities=30% Similarity=0.341 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599998889999996256
Q 000406 1344 MVALVGGSGSGKSTVIWLIQRFY 1366 (1560)
Q Consensus 1344 ~vaIVG~SGSGKSTLi~LL~gl~ 1366 (1560)
+|+|+|++|+|||||++.|.|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999998999999996777
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=87.61 E-value=0.21 Score=22.84 Aligned_cols=23 Identities=35% Similarity=0.430 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599998889999996256
Q 000406 1344 MVALVGGSGSGKSTVIWLIQRFY 1366 (1560)
Q Consensus 1344 ~vaIVG~SGSGKSTLi~LL~gl~ 1366 (1560)
+|+|+|.+|+|||||++.|.|--
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999999999999996888
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=87.51 E-value=0.23 Score=22.59 Aligned_cols=23 Identities=39% Similarity=0.534 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99985699998379999996298
Q 000406 703 TLALVGTSGGGKSTVFALIERFY 725 (1560)
Q Consensus 703 ~~aivG~sGsGKSTl~~ll~g~~ 725 (1560)
++.|+|+.||||||+.+.|...|
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999899999999987
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=87.51 E-value=0.095 Score=25.89 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=19.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9899985699998379999996298
Q 000406 701 SKTLALVGTSGGGKSTVFALIERFY 725 (1560)
Q Consensus 701 G~~~aivG~sGsGKSTl~~ll~g~~ 725 (1560)
.-+++|+|++++|||||++.|.+..
T Consensus 16 ~~~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 16 GIEVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9789998899998999999985898
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=87.47 E-value=0.22 Score=22.69 Aligned_cols=22 Identities=23% Similarity=0.446 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9998569999837999999629
Q 000406 703 TLALVGTSGGGKSTVFALIERF 724 (1560)
Q Consensus 703 ~~aivG~sGsGKSTl~~ll~g~ 724 (1560)
.+||+|+..+|||||++.|.+.
T Consensus 7 nIaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 7 NLGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 9999907787099999999974
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.40 E-value=0.2 Score=23.06 Aligned_cols=23 Identities=39% Similarity=0.450 Sum_probs=20.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99995999988899999962568
Q 000406 1345 VALVGGSGSGKSTVIWLIQRFYD 1367 (1560)
Q Consensus 1345 vaIVG~SGSGKSTLi~LL~gl~~ 1367 (1560)
|.|+|||||||+||++.|+..++
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~~ 25 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEHS 25 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99999999999999999997488
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=87.40 E-value=0.16 Score=23.91 Aligned_cols=25 Identities=40% Similarity=0.527 Sum_probs=20.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 8999856999983799999962989
Q 000406 702 KTLALVGTSGGGKSTVFALIERFYD 726 (1560)
Q Consensus 702 ~~~aivG~sGsGKSTl~~ll~g~~~ 726 (1560)
+.+.|+|++||||||+++.|...+.
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 1999989899898999999999998
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.39 E-value=0.18 Score=23.51 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99985699998379999996298
Q 000406 703 TLALVGTSGGGKSTVFALIERFY 725 (1560)
Q Consensus 703 ~~aivG~sGsGKSTl~~ll~g~~ 725 (1560)
.+.|.||.||||||.++.|..-|
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99997999999899999999986
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=87.34 E-value=0.19 Score=23.34 Aligned_cols=22 Identities=32% Similarity=0.481 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999888999999625
Q 000406 1344 MVALVGGSGSGKSTVIWLIQRF 1365 (1560)
Q Consensus 1344 ~vaIVG~SGSGKSTLi~LL~gl 1365 (1560)
.|+|||++|+|||||++.|.|-
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998899999999689
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=87.31 E-value=0.12 Score=24.87 Aligned_cols=27 Identities=30% Similarity=0.434 Sum_probs=22.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 998999856999983799999962989
Q 000406 700 SSKTLALVGTSGGGKSTVFALIERFYD 726 (1560)
Q Consensus 700 ~G~~~aivG~sGsGKSTl~~ll~g~~~ 726 (1560)
..-.++|+|+.|+|||||+..|.+.+.
T Consensus 53 ~~~~IgitG~pGaGKSTLi~~l~~~~~ 79 (327)
T d2p67a1 53 NTLRLGVTGTPGAGKSTFLEAFGMLLI 79 (327)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 832897438999989999999999997
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=87.30 E-value=0.17 Score=23.69 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99985699998379999996298
Q 000406 703 TLALVGTSGGGKSTVFALIERFY 725 (1560)
Q Consensus 703 ~~aivG~sGsGKSTl~~ll~g~~ 725 (1560)
++.|.||.||||||+++.|..-|
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998899999899999999987
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=87.11 E-value=0.25 Score=22.26 Aligned_cols=28 Identities=36% Similarity=0.750 Sum_probs=21.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 2998999856999983799999962989
Q 000406 699 PSSKTLALVGTSGGGKSTVFALIERFYD 726 (1560)
Q Consensus 699 ~~G~~~aivG~sGsGKSTl~~ll~g~~~ 726 (1560)
+.+..+++|||+|+||||.+.-|...+.
T Consensus 4 ~~~~vi~lvGptGvGKTTTiaKLA~~~~ 31 (207)
T d1okkd2 4 PKGRVVLVVGVNGVGKTTTIAKLGRYYQ 31 (207)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9977999989999988999999999999
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=86.87 E-value=0.15 Score=24.15 Aligned_cols=28 Identities=36% Similarity=0.502 Sum_probs=23.3
Q ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 4299899985699998379999996298
Q 000406 698 IPSSKTLALVGTSGGGKSTVFALIERFY 725 (1560)
Q Consensus 698 i~~G~~~aivG~sGsGKSTl~~ll~g~~ 725 (1560)
+..+..+.|.||.||||||+.+.|...|
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 4678289998999998799999999986
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.85 E-value=0.26 Score=22.10 Aligned_cols=28 Identities=18% Similarity=0.253 Sum_probs=24.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 2998999856999983799999962989
Q 000406 699 PSSKTLALVGTSGGGKSTVFALIERFYD 726 (1560)
Q Consensus 699 ~~G~~~aivG~sGsGKSTl~~ll~g~~~ 726 (1560)
.+|.+++|-|.-||||||++++|...+.
T Consensus 1 ~kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 1 GRGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9768999989988869999999999997
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=86.84 E-value=0.26 Score=22.06 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99985699998379999996298
Q 000406 703 TLALVGTSGGGKSTVFALIERFY 725 (1560)
Q Consensus 703 ~~aivG~sGsGKSTl~~ll~g~~ 725 (1560)
++.|+|+.||||||+.+.|..-|
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899998799999999987
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=86.65 E-value=0.088 Score=26.15 Aligned_cols=39 Identities=21% Similarity=0.411 Sum_probs=28.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEEECCCCC
Q ss_conf 9998569999837999999629899964899999526786588773548999047757
Q 000406 703 TLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIGMVGQEPIL 760 (1560)
Q Consensus 703 ~~aivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~l 760 (1560)
.+||+|.|||||||+.+.|...+... | -...++.||.+-
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~~~-~------------------v~~~iI~~Dsfy 44 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFRRE-G------------------VKAVSIEGDAFH 44 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHH-T------------------CCEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-C------------------CCEEEEECCCCC
T ss_conf 99998999780999999999997156-9------------------976999477787
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.60 E-value=0.19 Score=23.26 Aligned_cols=22 Identities=36% Similarity=0.483 Sum_probs=17.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9985699998379999996298
Q 000406 704 LALVGTSGGGKSTVFALIERFY 725 (1560)
Q Consensus 704 ~aivG~sGsGKSTl~~ll~g~~ 725 (1560)
+.++|++||||||+.++|...+
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8998899998899999999984
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.59 E-value=0.19 Score=23.28 Aligned_cols=22 Identities=27% Similarity=0.294 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9998569999837999999629
Q 000406 703 TLALVGTSGGGKSTVFALIERF 724 (1560)
Q Consensus 703 ~~aivG~sGsGKSTl~~ll~g~ 724 (1560)
.++|.|+.|||||||...|...
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~ 50 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNH 50 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9983799878899999999999
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.52 E-value=0.25 Score=22.23 Aligned_cols=43 Identities=28% Similarity=0.453 Sum_probs=30.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCE
Q ss_conf 39999959999888999999625689832899999855788988875231
Q 000406 1343 SMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQT 1392 (1560)
Q Consensus 1343 e~vaIVG~SGSGKSTLi~LL~gl~~p~~G~I~IdG~dI~~i~~~~lR~~I 1392 (1560)
..|.++|.+||||||+++.|.+.+... |.+...++.+.+|..+
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~l~~~-------~~~~~~~~~D~~r~~~ 45 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRYLNFI-------GVPTREFNVGQYRRDM 45 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHT-------TCCEEEEEHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHC-------CCCCEEECCCCEEHHH
T ss_conf 899998999999999999999999746-------9997397453011323
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=86.51 E-value=0.26 Score=22.13 Aligned_cols=24 Identities=38% Similarity=0.660 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995999988899999962568
Q 000406 1344 MVALVGGSGSGKSTVIWLIQRFYD 1367 (1560)
Q Consensus 1344 ~vaIVG~SGSGKSTLi~LL~gl~~ 1367 (1560)
.++|+|+.|||||||++.|++...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~ 25 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLE 25 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899991899839999999999884
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=86.47 E-value=0.23 Score=22.63 Aligned_cols=33 Identities=21% Similarity=0.388 Sum_probs=26.4
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf 589399999599998889999996256898328
Q 000406 1340 KGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGK 1372 (1560)
Q Consensus 1340 ~~Ge~vaIVG~SGSGKSTLi~LL~gl~~p~~G~ 1372 (1560)
.++..+.+.||+||||||.+..++...+....+
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~ 188 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERN 188 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSC
T ss_pred HHHCEEEEECCCCCCCCHHHHHHHHHHCCCCCE
T ss_conf 410548987678777447799986662578746
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.46 E-value=0.16 Score=23.85 Aligned_cols=117 Identities=19% Similarity=0.245 Sum_probs=63.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCEEEECCCCCCCCCCHHHHHHCCCCCCCHH
Q ss_conf 89399999599998889999996256898328999998557889888752318882788899756899971499999999
Q 000406 1341 GGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKASWA 1420 (1560)
Q Consensus 1341 ~Ge~vaIVG~SGSGKSTLi~LL~gl~~p~~G~I~IdG~dI~~i~~~~lR~~Ia~VpQd~~LF~gTIreNI~~g~~~~sd~ 1420 (1560)
+-..+.|+||.||||||++++|+.-| |-+.|+- -+-+|+.+ .+...-+...+++-..-+. ...+.
T Consensus 7 ~~~iI~i~GppGSGKsT~a~~La~~~----g~~~is~-------gdl~R~~~---~~~~~~~~~~i~~~~~~~~-~~~~~ 71 (196)
T d1ukza_ 7 QVSVIFVLGGPGAGKGTQCEKLVKDY----SFVHLSA-------GDLLRAEQ---GRAGSQYGELIKNCIKEGQ-IVPQE 71 (196)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS----SCEEEEH-------HHHHHHHH---HSTTCSCHHHHHHHHHTTC-CCCHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH----CCEEEEH-------HHHHHHHH---HHCCCHHHHHHHHHHHCCC-CCCCH
T ss_conf 97289998999999899999999985----9908853-------58999886---2010178899887640000-23203
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 99999999928999980999830200289997795799999999998159978998578
Q 000406 1421 EIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEA 1479 (1560)
Q Consensus 1421 eI~~al~~a~l~d~I~~LP~GldT~Ige~G~~LSGGQkQRLaLARALL~~p~ILILDEa 1479 (1560)
.+.............. .-+..+-++ .-....|...+.+.+.....+++||=+
T Consensus 72 ~~~~~~~~~~~~~~~~----~~~~~vl~g---~p~~~~q~~~~~~~~~~~~~~i~l~~~ 123 (196)
T d1ukza_ 72 ITLALLRNAISDNVKA----NKHKFLIDG---FPRKMDQAISFERDIVESKFILFFDCP 123 (196)
T ss_dssp HHHHHHHHHHHHHHHT----TCCEEEEET---CCCSHHHHHHHHHHTCCCSEEEEEECC
T ss_pred HHHHHHHHHHHHHHCC----CCCCEEEEC---CCHHHHHHHHHHHHCCCCCEEECCCCC
T ss_conf 6789999998864003----777535404---313689999999861545543125798
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=86.42 E-value=0.31 Score=21.44 Aligned_cols=27 Identities=26% Similarity=0.421 Sum_probs=23.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 998999856999983799999962989
Q 000406 700 SSKTLALVGTSGGGKSTVFALIERFYD 726 (1560)
Q Consensus 700 ~G~~~aivG~sGsGKSTl~~ll~g~~~ 726 (1560)
+|.+++|-|.-||||||+++.|...+.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 987899989988879999999999999
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=86.40 E-value=0.37 Score=20.80 Aligned_cols=24 Identities=21% Similarity=0.302 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999856999983799999962989
Q 000406 703 TLALVGTSGGGKSTVFALIERFYD 726 (1560)
Q Consensus 703 ~~aivG~sGsGKSTl~~ll~g~~~ 726 (1560)
+++++|+.|+|||||++.+.+...
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~~ 27 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGEDV 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHCCCCC
T ss_conf 999999999899999999808998
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=86.38 E-value=0.5 Score=19.68 Aligned_cols=32 Identities=19% Similarity=0.177 Sum_probs=23.5
Q ss_pred CCCCEEEECCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 222026742998999856999983799999962
Q 000406 691 LRSLNLVIPSSKTLALVGTSGGGKSTVFALIER 723 (1560)
Q Consensus 691 L~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g 723 (1560)
++.-.+ --.|.-+.|+|+||+||||++..|..
T Consensus 5 lH~~~v-~~~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 5 MHGVLV-DIYGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EEEEEE-EETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEE-EECCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 899999-99999999980899998999999998
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=86.34 E-value=0.3 Score=21.60 Aligned_cols=24 Identities=25% Similarity=0.458 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999856999983799999962989
Q 000406 703 TLALVGTSGGGKSTVFALIERFYD 726 (1560)
Q Consensus 703 ~~aivG~sGsGKSTl~~ll~g~~~ 726 (1560)
.++|-||.||||+|+.+.|..-|.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 899779998898999999999969
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.23 E-value=0.26 Score=22.11 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999888999999625
Q 000406 1344 MVALVGGSGSGKSTVIWLIQRF 1365 (1560)
Q Consensus 1344 ~vaIVG~SGSGKSTLi~LL~gl 1365 (1560)
+|+|+|++|+|||||++.|.+-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998899999999679
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.16 E-value=0.33 Score=21.21 Aligned_cols=21 Identities=24% Similarity=0.457 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999856999983799999962
Q 000406 703 TLALVGTSGGGKSTVFALIER 723 (1560)
Q Consensus 703 ~~aivG~sGsGKSTl~~ll~g 723 (1560)
+++++|++|+|||||++-+.+
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999698999999970
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=86.03 E-value=0.29 Score=21.74 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999888999999625
Q 000406 1344 MVALVGGSGSGKSTVIWLIQRF 1365 (1560)
Q Consensus 1344 ~vaIVG~SGSGKSTLi~LL~gl 1365 (1560)
.|+|+|.+|+|||||++.|.|-
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999979999899999999589
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=85.94 E-value=0.31 Score=21.48 Aligned_cols=22 Identities=41% Similarity=0.533 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9998569999837999999629
Q 000406 703 TLALVGTSGGGKSTVFALIERF 724 (1560)
Q Consensus 703 ~~aivG~sGsGKSTl~~ll~g~ 724 (1560)
.++|+|..||||||+.+.+..+
T Consensus 5 iIgitG~igSGKStv~~~l~~~ 26 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFADL 26 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9997898868899999999987
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.94 E-value=0.33 Score=21.25 Aligned_cols=29 Identities=24% Similarity=0.294 Sum_probs=25.4
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 58939999959999888999999625689
Q 000406 1340 KGGSMVALVGGSGSGKSTVIWLIQRFYDP 1368 (1560)
Q Consensus 1340 ~~Ge~vaIVG~SGSGKSTLi~LL~gl~~p 1368 (1560)
++|-.|+|.|+-||||||++++|...+..
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~~ 29 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALCA 29 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 98059999899888999999999999987
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=85.89 E-value=0.26 Score=22.05 Aligned_cols=27 Identities=19% Similarity=0.511 Sum_probs=22.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 998999856999983799999962989
Q 000406 700 SSKTLALVGTSGGGKSTVFALIERFYD 726 (1560)
Q Consensus 700 ~G~~~aivG~sGsGKSTl~~ll~g~~~ 726 (1560)
|+.-+.++||+|+|||.|++.|.+.+.
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~~~ 74 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKLAN 74 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 986699989999888899999862132
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.67 E-value=0.57 Score=19.16 Aligned_cols=21 Identities=33% Similarity=0.487 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999856999983799999962
Q 000406 703 TLALVGTSGGGKSTVFALIER 723 (1560)
Q Consensus 703 ~~aivG~sGsGKSTl~~ll~g 723 (1560)
++.++|.+|+|||||++-+..
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899789999999973
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=85.47 E-value=0.31 Score=21.40 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99985699998379999996298
Q 000406 703 TLALVGTSGGGKSTVFALIERFY 725 (1560)
Q Consensus 703 ~~aivG~sGsGKSTl~~ll~g~~ 725 (1560)
++.|+|+.||||||+.+.|..-+
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998799999899999999986
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=85.40 E-value=0.3 Score=21.55 Aligned_cols=22 Identities=27% Similarity=0.533 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999888999999625
Q 000406 1344 MVALVGGSGSGKSTVIWLIQRF 1365 (1560)
Q Consensus 1344 ~vaIVG~SGSGKSTLi~LL~gl 1365 (1560)
+++|||.+|+|||||++.+.+-
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998999999999679
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=85.39 E-value=0.32 Score=21.30 Aligned_cols=25 Identities=36% Similarity=0.440 Sum_probs=22.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999959999888999999625689
Q 000406 1344 MVALVGGSGSGKSTVIWLIQRFYDP 1368 (1560)
Q Consensus 1344 ~vaIVG~SGSGKSTLi~LL~gl~~p 1368 (1560)
+|+|-||+||||||++++|+.-|.-
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg~ 29 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFGF 29 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 9997899987989999999999699
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=85.27 E-value=0.28 Score=21.89 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=21.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3999995999988899999962568
Q 000406 1343 SMVALVGGSGSGKSTVIWLIQRFYD 1367 (1560)
Q Consensus 1343 e~vaIVG~SGSGKSTLi~LL~gl~~ 1367 (1560)
+.|.++|++||||||+.++|+.-+.
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~Lg 27 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARALG 27 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 9889988999988999999999949
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=85.27 E-value=0.29 Score=21.76 Aligned_cols=22 Identities=41% Similarity=0.729 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999888999999625
Q 000406 1344 MVALVGGSGSGKSTVIWLIQRF 1365 (1560)
Q Consensus 1344 ~vaIVG~SGSGKSTLi~LL~gl 1365 (1560)
.+||+|.+||||||+++.|..+
T Consensus 5 IIgitG~~gSGKstva~~l~~~ 26 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRSW 26 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999898877899999999987
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=85.26 E-value=0.37 Score=20.84 Aligned_cols=28 Identities=18% Similarity=0.305 Sum_probs=24.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8939999959999888999999625689
Q 000406 1341 GGSMVALVGGSGSGKSTVIWLIQRFYDP 1368 (1560)
Q Consensus 1341 ~Ge~vaIVG~SGSGKSTLi~LL~gl~~p 1368 (1560)
+|..|+|-|+-||||||++++|...+..
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~~ 28 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLEQ 28 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 9878999899888799999999999996
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=85.26 E-value=0.13 Score=24.79 Aligned_cols=43 Identities=26% Similarity=0.295 Sum_probs=31.5
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCC--CEEEECCEECCC
Q ss_conf 5893999995999988899999962568983--289999985578
Q 000406 1340 KGGSMVALVGGSGSGKSTVIWLIQRFYDPNQ--GKVMIEGVDLRE 1382 (1560)
Q Consensus 1340 ~~Ge~vaIVG~SGSGKSTLi~LL~gl~~p~~--G~I~IdG~dI~~ 1382 (1560)
++|-.|.+.|.||||||||++.|..-+.... -.+.+||-+++.
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR~ 66 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRF 66 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHH
T ss_conf 998699998999999899999999887774275089975367887
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=85.21 E-value=0.18 Score=23.43 Aligned_cols=22 Identities=36% Similarity=0.424 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999888999999625
Q 000406 1344 MVALVGGSGSGKSTVIWLIQRF 1365 (1560)
Q Consensus 1344 ~vaIVG~SGSGKSTLi~LL~gl 1365 (1560)
.|||+|++++|||||++.|.|-
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 6999899998799999999689
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.04 E-value=0.35 Score=20.96 Aligned_cols=22 Identities=23% Similarity=0.481 Sum_probs=19.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 8999856999983799999962
Q 000406 702 KTLALVGTSGGGKSTVFALIER 723 (1560)
Q Consensus 702 ~~~aivG~sGsGKSTl~~ll~g 723 (1560)
..++|+|+.|+|||||++.+.+
T Consensus 1 k~V~ivG~~~~GKTsLl~~l~~ 22 (207)
T d2fh5b1 1 RAVLFVGLCDSGKTLLFVRLLT 22 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHC
T ss_conf 9899999999898999999980
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=85.04 E-value=0.34 Score=21.07 Aligned_cols=23 Identities=35% Similarity=0.393 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599998889999996256
Q 000406 1344 MVALVGGSGSGKSTVIWLIQRFY 1366 (1560)
Q Consensus 1344 ~vaIVG~SGSGKSTLi~LL~gl~ 1366 (1560)
+|.|+|+.||||||++++|+.-|
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999899999999987
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.01 E-value=0.35 Score=20.96 Aligned_cols=116 Identities=16% Similarity=0.204 Sum_probs=59.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCEEEECCCCCCCCCCHHHHHHCCCCCCCHHHHH
Q ss_conf 99999599998889999996256898328999998557889888752318882788899756899971499999999999
Q 000406 1344 MVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKASWAEIE 1423 (1560)
Q Consensus 1344 ~vaIVG~SGSGKSTLi~LL~gl~~p~~G~I~IdG~dI~~i~~~~lR~~Ia~VpQd~~LF~gTIreNI~~g~~~~sd~eI~ 1423 (1560)
+|.|+||.||||||+++.|+.-| |-..|+- -+-+|..+ -+....+...+.+.+.-+. ..+++.+.
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~----g~~~i~~-------g~llR~~~---~~~~~~~~~~~~~~~~~~~-~v~d~~~~ 67 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY----GYTHLSA-------GELLRDER---KNPDSQYGELIEKYIKEGK-IVPVEITI 67 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH----CCEEEEH-------HHHHHHHH---HCTTSTTHHHHHHHHHTTC-CCCHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH----CCCEECH-------HHHHHHHH---HHHHHHHHHHHHHHHHCCC-CCCCCHHH
T ss_conf 99997999999899999999986----9926768-------89999988---7620468999999970697-21134036
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC--CCE-EEEECC
Q ss_conf 99999928999980999830200289997795799999999998159--978-998578
Q 000406 1424 EAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKG--SRV-LLLDEA 1479 (1560)
Q Consensus 1424 ~al~~a~l~d~I~~LP~GldT~Ige~G~~LSGGQkQRLaLARALL~~--p~I-LILDEa 1479 (1560)
..+... +.+...... .-+..+.+ | +.-.+.|...+.+.+-.. +.+ +++|.+
T Consensus 68 ~~~~~~-~~~~~~~~~-~~~~~~~~-g--~pr~~~~~~~l~~~~~~~~~~~~vi~l~~~ 121 (194)
T d1teva_ 68 SLLKRE-MDQTMAANA-QKNKFLID-G--FPRNQDNLQGWNKTMDGKADVSFVLFFDCN 121 (194)
T ss_dssp HHHHHH-HHHHHHHCT-TCCEEEEE-S--CCCSHHHHHHHHHHHTTTCEEEEEEEEECC
T ss_pred HHHHHH-HCCCCHHHH-CCCCEEEC-C--CHHHHHHHHHHHHHHHCCCCCCEEEEECCC
T ss_conf 788876-412100011-24511101-1--030489999986442105543389962476
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=84.98 E-value=0.33 Score=21.28 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999888999999625
Q 000406 1344 MVALVGGSGSGKSTVIWLIQRF 1365 (1560)
Q Consensus 1344 ~vaIVG~SGSGKSTLi~LL~gl 1365 (1560)
||.|+|++|+|||||++-+.+-
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998989999999659
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=84.97 E-value=0.19 Score=23.36 Aligned_cols=118 Identities=19% Similarity=0.228 Sum_probs=67.2
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCEEEECCCCCCCCCCHHHHHHCCCCCCC
Q ss_conf 95893999995999988899999962568983289999985578898887523188827888997568999714999999
Q 000406 1339 VKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKAS 1418 (1560)
Q Consensus 1339 I~~Ge~vaIVG~SGSGKSTLi~LL~gl~~p~~G~I~IdG~dI~~i~~~~lR~~Ia~VpQd~~LF~gTIreNI~~g~~~~s 1418 (1560)
++++..|.|+||.||||||+++.|+.-| |-..|+-- +-+|+.+. ... .....+.+.+.-+. ..+
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~----g~~~is~g-------~llr~~~~---~~~-~~~~~~~~~~~~~~-~~~ 68 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY----GYTHLSTG-------DLLRAEVS---SGS-ARGKMLSEIMEKGQ-LVP 68 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT----CCEEEEHH-------HHHHHHHH---HTC-HHHHHHHHHHTTTC-CCC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH----CCEEEECC-------HHHHHHHH---HHH-HHHHHHHHHHHHCC-CCC
T ss_conf 4678289998999998799999999986----98468334-------78999998---767-65145677776313-776
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 99999999999289999809998302002899977957999999999981599789985788
Q 000406 1419 WAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEAS 1480 (1560)
Q Consensus 1419 d~eI~~al~~a~l~d~I~~LP~GldT~Ige~G~~LSGGQkQRLaLARALL~~p~ILILDEaT 1480 (1560)
++.+...++.. +...+...+..+-++ +..-..|--.+.+.+.....++.++.+.
T Consensus 69 ~~~~~~~~~~~-----l~~~~~~~~g~ildg---~pr~~~qa~~~~~~~~~~~~~~~~~~~~ 122 (194)
T d3adka_ 69 LETVLDMLRDA-----MVAKVDTSKGFLIDG---YPREVKQGEEFERKIGQPTLLLYVDAGP 122 (194)
T ss_dssp HHHHHHHHHHH-----HHTTTTTCSCEEEES---CCSSHHHHHHHHHHTCCCSEEEEEECCH
T ss_pred HHEEEEEHHHH-----HHHCCCCCCCCEEEE---CCCHHHHHHHHHHHHCCCCCHHCCCCCH
T ss_conf 22244102456-----640322356602431---1101578999999837752000033312
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=84.68 E-value=0.37 Score=20.84 Aligned_cols=23 Identities=35% Similarity=0.397 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599998889999996256
Q 000406 1344 MVALVGGSGSGKSTVIWLIQRFY 1366 (1560)
Q Consensus 1344 ~vaIVG~SGSGKSTLi~LL~gl~ 1366 (1560)
+|.|+|+.||||||+++.|+.-|
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899998799999999987
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=84.61 E-value=0.37 Score=20.78 Aligned_cols=26 Identities=19% Similarity=0.327 Sum_probs=21.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 29989998569999837999999629
Q 000406 699 PSSKTLALVGTSGGGKSTVFALIERF 724 (1560)
Q Consensus 699 ~~G~~~aivG~sGsGKSTl~~ll~g~ 724 (1560)
++.-++++||..|+|||||++-|.+-
T Consensus 13 ~k~~kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 13 HQEHKVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 98579999999998989999999668
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=84.56 E-value=0.63 Score=18.78 Aligned_cols=95 Identities=19% Similarity=0.306 Sum_probs=48.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEEECCCCCCCCCHHHHHHCCCCCCCHH
Q ss_conf 99899985699998379999996298999648999995267865887735489990477576666899985499877899
Q 000406 700 SSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENATMK 779 (1560)
Q Consensus 700 ~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~ 779 (1560)
....+++|||+|+||||.+.-|...+. ..| .+++++.=|.+-. . ..+
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~~-~~g------------------~kV~lit~Dt~R~-------------g-a~e 57 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFYK-KKG------------------FKVGLVGADVYRP-------------A-ALE 57 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHHH-HTT------------------CCEEEEECCCSSH-------------H-HHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH-HCC------------------CCEEEEEEECCCC-------------C-HHH
T ss_conf 998999989999998999999999999-779------------------9369997202355-------------1-567
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf 999999996018789709999874128999999968999999999861499879982778899
Q 000406 780 EAVAACKAASAHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSAL 842 (1560)
Q Consensus 780 ~i~~a~~~~~~~~~i~~lp~gl~t~ig~~g~~LSgGQkQrialARAll~~~~iliLDE~ts~l 842 (1560)
++..-++.. |......+....+. .-.+=++..+..++.++++.| |++.
T Consensus 58 QL~~~a~~l-----------~v~~~~~~~~~~~~--~~~~~a~~~~~~~~~d~IlID--TaGr 105 (211)
T d1j8yf2 58 QLQQLGQQI-----------GVPVYGEPGEKDVV--GIAKRGVEKFLSEKMEIIIVD--TAGR 105 (211)
T ss_dssp HHHHHHHHH-----------TCCEECCTTCCCHH--HHHHHHHHHHHHTTCSEEEEE--CCCS
T ss_pred HHHHHCCCC-----------CCCEEECCCCHHHH--HHHHHHHHHHHCCCCCEEEEE--CCCC
T ss_conf 898740146-----------84223024410244--789999987402677369985--3776
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=84.54 E-value=0.31 Score=21.48 Aligned_cols=29 Identities=28% Similarity=0.425 Sum_probs=23.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 999995999988899999962568983289999
Q 000406 1344 MVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIE 1376 (1560)
Q Consensus 1344 ~vaIVG~SGSGKSTLi~LL~gl~~p~~G~I~Id 1376 (1560)
.+.|+|++||||||+.++|+..+ |--++|
T Consensus 2 ~I~liG~~GsGKsTi~k~La~~l----~~~~~d 30 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAKDL----DLVFLD 30 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH----TCEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHH----CCCEEE
T ss_conf 39998999998899999999983----998783
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=84.50 E-value=0.41 Score=20.40 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=15.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99985699998379999996298
Q 000406 703 TLALVGTSGGGKSTVFALIERFY 725 (1560)
Q Consensus 703 ~~aivG~sGsGKSTl~~ll~g~~ 725 (1560)
.+.|.|+.||||||+.+.|..-+
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999799999999998
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=84.40 E-value=0.64 Score=18.73 Aligned_cols=32 Identities=28% Similarity=0.241 Sum_probs=23.2
Q ss_pred CCCCEEEECCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 222026742998999856999983799999962
Q 000406 691 LRSLNLVIPSSKTLALVGTSGGGKSTVFALIER 723 (1560)
Q Consensus 691 L~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g 723 (1560)
++. ++---.|.-+.|+|+||+||||++..|..
T Consensus 6 ~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~~ 37 (169)
T d1ko7a2 6 LHG-VLVDVYGVGVLITGDSGIGKSETALELIK 37 (169)
T ss_dssp EES-EEEEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred EEE-EEEEECCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 889-99999999999980899999999999998
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=84.36 E-value=0.42 Score=20.30 Aligned_cols=33 Identities=24% Similarity=0.361 Sum_probs=25.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 89998569999837999999629899964899999
Q 000406 702 KTLALVGTSGGGKSTVFALIERFYDPTKGLITLDG 736 (1560)
Q Consensus 702 ~~~aivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g 736 (1560)
.-+.++||+||||||+++.|.+.+.. +-+.+++
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~~--~~~~i~~ 65 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQG--NVIVIDN 65 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTTT--CCEEECT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHC--CEEEEEC
T ss_conf 79998897998899999999998651--5489832
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.35 E-value=0.21 Score=22.98 Aligned_cols=27 Identities=19% Similarity=0.396 Sum_probs=24.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 893999995999988899999962568
Q 000406 1341 GGSMVALVGGSGSGKSTVIWLIQRFYD 1367 (1560)
Q Consensus 1341 ~Ge~vaIVG~SGSGKSTLi~LL~gl~~ 1367 (1560)
++..|+|-|+.||||||++++|...++
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 998899987888779999999999973
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=84.32 E-value=0.52 Score=19.54 Aligned_cols=34 Identities=32% Similarity=0.326 Sum_probs=27.1
Q ss_pred CCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 30010059995893999995999988899999962
Q 000406 1330 TVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQR 1364 (1560)
Q Consensus 1330 ~vL~nIsl~I~~Ge~vaIVG~SGSGKSTLi~LL~g 1364 (1560)
..++.-.+.+ .|.-+.|.|+||+||||++..|..
T Consensus 4 ~~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 4 AQIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred CEEEEEEEEE-CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 3178999999-999999981899998999999998
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=84.32 E-value=0.48 Score=19.79 Aligned_cols=40 Identities=38% Similarity=0.501 Sum_probs=27.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEC
Q ss_conf 8939999959999888999999625689832899999855
Q 000406 1341 GGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDL 1380 (1560)
Q Consensus 1341 ~Ge~vaIVG~SGSGKSTLi~LL~gl~~p~~G~I~IdG~dI 1380 (1560)
++..+++|||+|+||||.+-=|+..+.-..-+|.+=..|.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt 44 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDT 44 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 9779999899999889999999999997799079998136
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=84.27 E-value=0.38 Score=20.70 Aligned_cols=45 Identities=20% Similarity=0.552 Sum_probs=33.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEEECCC
Q ss_conf 99985699998379999996298999648999995267865887735489990477
Q 000406 703 TLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIGMVGQEP 758 (1560)
Q Consensus 703 ~~aivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~ 758 (1560)
-+.++||||||||-|++.|.++.+.. =+..|...+. ..|||..+.
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~VP--Fv~~daT~fT---------eaGYvG~DV 95 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLANAP--FIKVEATKFT---------EVGYVGKEV 95 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCC--EEEEEGGGGC-------------CCCCT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCC--EEEEECCEEE---------ECCEEECCH
T ss_conf 47998999988999999999873898--8986255114---------111110444
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=84.19 E-value=0.21 Score=22.92 Aligned_cols=21 Identities=38% Similarity=0.540 Sum_probs=19.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999959999888999999625
Q 000406 1345 VALVGGSGSGKSTVIWLIQRF 1365 (1560)
Q Consensus 1345 vaIVG~SGSGKSTLi~LL~gl 1365 (1560)
|||+|++|+|||||++.|.|-
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899999899999999689
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=84.17 E-value=0.26 Score=22.11 Aligned_cols=26 Identities=27% Similarity=0.420 Sum_probs=22.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 93999995999988899999962568
Q 000406 1342 GSMVALVGGSGSGKSTVIWLIQRFYD 1367 (1560)
Q Consensus 1342 Ge~vaIVG~SGSGKSTLi~LL~gl~~ 1367 (1560)
.-.|+|-|..||||||++++|.+.+.
T Consensus 9 p~~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 9 PFTVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 61999889999888999999998707
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=84.16 E-value=0.44 Score=20.15 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=22.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999959999888999999625689
Q 000406 1344 MVALVGGSGSGKSTVIWLIQRFYDP 1368 (1560)
Q Consensus 1344 ~vaIVG~SGSGKSTLi~LL~gl~~p 1368 (1560)
.|+|-||.||||+|+.++|..-|.-
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~gl 29 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQW 29 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 8997799988989999999999699
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=84.14 E-value=0.52 Score=19.50 Aligned_cols=120 Identities=15% Similarity=0.052 Sum_probs=55.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCEEEECCCCCCCCCCHHHHHHCCCCCCCHHHH
Q ss_conf 39999959999888999999625689832899999855788988875231888278889975689997149999999999
Q 000406 1343 SMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKASWAEI 1422 (1560)
Q Consensus 1343 e~vaIVG~SGSGKSTLi~LL~gl~~p~~G~I~IdG~dI~~i~~~~lR~~Ia~VpQd~~LF~gTIreNI~~g~~~~sd~eI 1422 (1560)
.-+-++||.|+||||+++.|++.+.. +-+.++. +.+|+.. + -..+.++.... ...+..
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~~--~~~~i~~--------d~~~~~~------~-~~~~~~~~~~~-----~~~~~~ 90 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQG--NVIVIDN--------DTFKQQH------P-NFDELVKLYEK-----DVVKHV 90 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTTT--CCEEECT--------HHHHTTS------T-THHHHHHHHGG-----GCHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHC--CEEEEEC--------HHHHHHH------C-CCCCCCHHHHH-----HHHHHH
T ss_conf 79998897998899999999998651--5489832--------8999985------2-57641133067-----899998
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHH
Q ss_conf 999999928999980999830200289997795799999999998159978998578858799999
Q 000406 1423 EEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEASSALDLESE 1488 (1560)
Q Consensus 1423 ~~al~~a~l~d~I~~LP~GldT~Ige~G~~LSGGQkQRLaLARALL~~p~ILILDEaTSaLD~~tE 1488 (1560)
........+......+..+.+. +.+.+....--..+ +.+.+......+.+..++...+..-.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~ 152 (273)
T d1gvnb_ 91 TPYSNRMTEAIISRLSDQGYNL-VIEGTGRTTDVPIQ---TATMLQAKGYETKMYVMAVPKINSYL 152 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCE-EECCCCCCSHHHHH---HHHHHHTTTCEEEEEEECCCHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHCCCC-CCCCCCCCHHHHHH---HHHHHHHCCCEEEEEECCCCCHHHHH
T ss_conf 7543212899999998617897-54555565678999---99999876974999744787202222
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=84.12 E-value=0.4 Score=20.50 Aligned_cols=21 Identities=19% Similarity=0.373 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999856999983799999962
Q 000406 703 TLALVGTSGGGKSTVFALIER 723 (1560)
Q Consensus 703 ~~aivG~sGsGKSTl~~ll~g 723 (1560)
+++++|.+|+|||||++-+.+
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999198999999973
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=84.10 E-value=0.38 Score=20.74 Aligned_cols=22 Identities=45% Similarity=0.755 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999888999999625
Q 000406 1344 MVALVGGSGSGKSTVIWLIQRF 1365 (1560)
Q Consensus 1344 ~vaIVG~SGSGKSTLi~LL~gl 1365 (1560)
.|||+|..||||||+++.|..+
T Consensus 4 iIgITG~igSGKStv~~~l~~~ 25 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTDL 25 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9998888878899999999987
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=84.10 E-value=0.014 Score=33.04 Aligned_cols=34 Identities=24% Similarity=0.224 Sum_probs=27.5
Q ss_pred CCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 32220267429989998569999837999999629
Q 000406 690 ILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERF 724 (1560)
Q Consensus 690 vL~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~ 724 (1560)
.+++.++.+.+| .+.|+|+|||||||++.+|.-.
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~ 47 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTA 47 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHH
T ss_pred CEEEEEEECCCC-EEEEECCCCCCHHHHHHHHHHH
T ss_conf 870279974998-0899889999879999999999
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=84.04 E-value=0.28 Score=21.82 Aligned_cols=111 Identities=19% Similarity=0.197 Sum_probs=51.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHH-HHCEEEECCCCCCCCCCHHHHHHCCCCCCCHHHH
Q ss_conf 999995999988899999962568983289999985578898887-5231888278889975689997149999999999
Q 000406 1344 MVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWL-RKQTALVGQEPALFAGTIRDNIALGNPKASWAEI 1422 (1560)
Q Consensus 1344 ~vaIVG~SGSGKSTLi~LL~gl~~p~~G~I~IdG~dI~~i~~~~l-R~~Ia~VpQd~~LF~gTIreNI~~g~~~~sd~eI 1422 (1560)
++.|.||.||||||+++.|..-|. -..| +...+ |..+. ...-....+.+.+..+. ....+..
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~~----~~~i--------s~~~~~~~~~~----~~~~~~~~~~~~~~~g~-~~~~~~~ 67 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKYQ----LAHI--------SAGDLLRAEIA----AGSENGKRAKEFMEKGQ-LVPDEIV 67 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHHC----CEEC--------CHHHHHHHHHH----HTCHHHHHHHHHHHTTC-CCCHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC----CCEE--------EHHHHHHHHHH----CCCHHHHHHHHHHHCCC-CCCCEEE
T ss_conf 999988999998999999999879----9178--------50078887641----13378999999986688-5432121
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 999999928999980999830200289997795799999999998159978998578
Q 000406 1423 EEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEA 1479 (1560)
Q Consensus 1423 ~~al~~a~l~d~I~~LP~GldT~Ige~G~~LSGGQkQRLaLARALL~~p~ILILDEa 1479 (1560)
.......-...... ..|+ .+.. +-.-..|...+.+.......+++||-+
T Consensus 68 ~~~~~~~~~~~~~~--~~~~--vid~----~~~~~~q~~~l~~~~~~p~~~i~L~~~ 116 (189)
T d1zaka1 68 VNMVKERLRQPDAQ--ENGW--LLDG----YPRSYSQAMALETLEIRPDTFILLDVP 116 (189)
T ss_dssp HHHHHHHHHSHHHH--HTCE--EEES----CCCSHHHHHHHHTTTCCCSEEEEEECC
T ss_pred HHHHHHHHHHCCCC--CCCE--EEEC----CCHHHHHHHHHHHCCCCCCHHEEECHH
T ss_conf 03566676530144--6737--9606----212467775443013451121011100
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.04 E-value=0.44 Score=20.13 Aligned_cols=28 Identities=21% Similarity=0.405 Sum_probs=25.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8939999959999888999999625689
Q 000406 1341 GGSMVALVGGSGSGKSTVIWLIQRFYDP 1368 (1560)
Q Consensus 1341 ~Ge~vaIVG~SGSGKSTLi~LL~gl~~p 1368 (1560)
+|..|+|-|.-||||||++++|...+..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~ 29 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP 29 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 7689999899888699999999999971
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.93 E-value=0.39 Score=20.64 Aligned_cols=24 Identities=17% Similarity=0.367 Sum_probs=21.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399999599998889999996256
Q 000406 1343 SMVALVGGSGSGKSTVIWLIQRFY 1366 (1560)
Q Consensus 1343 e~vaIVG~SGSGKSTLi~LL~gl~ 1366 (1560)
.|++|+|++|+|||||++.|.+-.
T Consensus 1 ~KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 1 GKLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 989999999999999999995899
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.88 E-value=0.53 Score=19.43 Aligned_cols=27 Identities=19% Similarity=0.209 Sum_probs=23.6
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 742998999856999983799999962
Q 000406 697 VIPSSKTLALVGTSGGGKSTVFALIER 723 (1560)
Q Consensus 697 ~i~~G~~~aivG~sGsGKSTl~~ll~g 723 (1560)
-+++|+.+.|.|++||||||++.-++-
T Consensus 30 Gi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 30 GVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp SEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 986996999983899988999999999
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=83.81 E-value=0.23 Score=22.62 Aligned_cols=39 Identities=18% Similarity=0.366 Sum_probs=28.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCEEEECCCCCC
Q ss_conf 9999959999888999999625689832899999855788988875231888278889
Q 000406 1344 MVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQEPAL 1401 (1560)
Q Consensus 1344 ~vaIVG~SGSGKSTLi~LL~gl~~p~~G~I~IdG~dI~~i~~~~lR~~Ia~VpQd~~L 1401 (1560)
.|||.|.|||||||+.+.|...+... .-..++|.||.+-
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~~~-------------------~v~~~iI~~Dsfy 44 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFRRE-------------------GVKAVSIEGDAFH 44 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHH-------------------TCCEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-------------------CCCEEEEECCCCC
T ss_conf 99998999780999999999997156-------------------9976999477787
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=83.71 E-value=0.089 Score=26.14 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9998569999837999999629
Q 000406 703 TLALVGTSGGGKSTVFALIERF 724 (1560)
Q Consensus 703 ~~aivG~sGsGKSTl~~ll~g~ 724 (1560)
+++++|++++|||||++.|.|.
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999999999999589
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=83.65 E-value=0.58 Score=19.08 Aligned_cols=23 Identities=17% Similarity=0.231 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599998889999996256
Q 000406 1344 MVALVGGSGSGKSTVIWLIQRFY 1366 (1560)
Q Consensus 1344 ~vaIVG~SGSGKSTLi~LL~gl~ 1366 (1560)
+++|+|+.|+|||||++.|.+-.
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99999999989999999980899
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=83.55 E-value=0.3 Score=21.61 Aligned_cols=27 Identities=19% Similarity=0.347 Sum_probs=22.6
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 589399999599998889999996256
Q 000406 1340 KGGSMVALVGGSGSGKSTVIWLIQRFY 1366 (1560)
Q Consensus 1340 ~~Ge~vaIVG~SGSGKSTLi~LL~gl~ 1366 (1560)
++.-+++|||++|+|||||++.|.+-.
T Consensus 11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 11 KKTGKLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 777789999999989899999996788
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=83.47 E-value=0.02 Score=31.74 Aligned_cols=35 Identities=23% Similarity=0.261 Sum_probs=27.9
Q ss_pred CEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 001005999589399999599998889999996256
Q 000406 1331 VLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFY 1366 (1560)
Q Consensus 1331 vL~nIsl~I~~Ge~vaIVG~SGSGKSTLi~LL~gl~ 1366 (1560)
.+++.++.+.+| .+.|+|+|||||||++.+|.-.+
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L 48 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTAL 48 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred CEEEEEEECCCC-EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 870279974998-08998899998799999999996
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.46 E-value=0.47 Score=19.90 Aligned_cols=27 Identities=30% Similarity=0.403 Sum_probs=23.8
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 995893999995999988899999962
Q 000406 1338 KVKGGSMVALVGGSGSGKSTVIWLIQR 1364 (1560)
Q Consensus 1338 ~I~~Ge~vaIVG~SGSGKSTLi~LL~g 1364 (1560)
-+++|+.+-|.|++|+|||||+.-++-
T Consensus 30 Gi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 30 GVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp SEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 986996999983899988999999999
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=83.39 E-value=0.45 Score=20.09 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9998569999837999999629
Q 000406 703 TLALVGTSGGGKSTVFALIERF 724 (1560)
Q Consensus 703 ~~aivG~sGsGKSTl~~ll~g~ 724 (1560)
.+||+|+..+|||||++.|++.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 7999969985499999999823
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.38 E-value=0.7 Score=18.40 Aligned_cols=36 Identities=25% Similarity=0.387 Sum_probs=26.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC-----CCCCCCCE-----EEECCEE
Q ss_conf 999995999988899999962-----56898328-----9999985
Q 000406 1344 MVALVGGSGSGKSTVIWLIQR-----FYDPNQGK-----VMIEGVD 1379 (1560)
Q Consensus 1344 ~vaIVG~SGSGKSTLi~LL~g-----l~~p~~G~-----I~IdG~d 1379 (1560)
||+++|.+|+|||||++-+.+ -|.|+-|. +.+||..
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~~~~~~~~~~~ 49 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSI 49 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEECCCCCEEECCCC
T ss_conf 8999998997989999999709998763761331011210002200
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=83.15 E-value=0.47 Score=19.87 Aligned_cols=21 Identities=24% Similarity=0.474 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999856999983799999962
Q 000406 703 TLALVGTSGGGKSTVFALIER 723 (1560)
Q Consensus 703 ~~aivG~sGsGKSTl~~ll~g 723 (1560)
+++++|.+|+|||||++-+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999198999999971
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=83.15 E-value=0.37 Score=20.76 Aligned_cols=83 Identities=22% Similarity=0.211 Sum_probs=43.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC--CCCCCEEEECCEECCCCCHHHHHCCEEEEECCC-CCCCCCHHHHH--HCCCCCCC
Q ss_conf 99985699998379999996298--999648999995267865887735489990477-57666689998--54998778
Q 000406 703 TLALVGTSGGGKSTVFALIERFY--DPTKGLITLDGHDLKSLQVKWLRTQIGMVGQEP-ILFATSILENV--LMGKENAT 777 (1560)
Q Consensus 703 ~~aivG~sGsGKSTl~~ll~g~~--~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~-~lf~~ti~eNi--~~~~~~~~ 777 (1560)
.++|+|+.|+|||||+..|+..- ....|++. +|..+.+..+++..+++++-..-. +.+.+ .+-|+ ++|..+.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~-~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~-~~~n~iDtPGh~dF- 80 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVE-EGTTTTDYTPEAKLHRTTVRTGVAPLLFRG-HRVFLLDAPGYGDF- 80 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGG-GTCCSSCCSHHHHHTTSCCSCEEEEEEETT-EEEEEEECCCSGGG-
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCHHHCCCH-HCCCCCCCHHHHHHHCCEEEEECCCCCCCC-CCEEEECCCCHHHH-
T ss_conf 999994889809999999999709755306622-221135626988873876875102222343-21068806815543-
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999996
Q 000406 778 MKEAVAACKAA 788 (1560)
Q Consensus 778 ~~~i~~a~~~~ 788 (1560)
-.++..+++.+
T Consensus 81 ~~e~~~al~~~ 91 (267)
T d2dy1a2 81 VGEIRGALEAA 91 (267)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHCCC
T ss_conf 35565431246
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=83.07 E-value=0.28 Score=21.85 Aligned_cols=28 Identities=25% Similarity=0.502 Sum_probs=20.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 2998999856999983799999962989
Q 000406 699 PSSKTLALVGTSGGGKSTVFALIERFYD 726 (1560)
Q Consensus 699 ~~G~~~aivG~sGsGKSTl~~ll~g~~~ 726 (1560)
++-..+++|||+|+||||.+.-|...+.
T Consensus 7 ~~p~vi~lvGptGvGKTTTiAKLA~~~~ 34 (211)
T d2qy9a2 7 KAPFVILMVGVNGVGKTTTIGKLARQFE 34 (211)
T ss_dssp CTTEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9997999989999998999999999999
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.84 E-value=0.54 Score=19.35 Aligned_cols=21 Identities=33% Similarity=0.414 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999856999983799999962
Q 000406 703 TLALVGTSGGGKSTVFALIER 723 (1560)
Q Consensus 703 ~~aivG~sGsGKSTl~~ll~g 723 (1560)
+++++|..|+|||||++-+.+
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~ 27 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTD 27 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999198999999961
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.70 E-value=0.74 Score=18.20 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHH-CC
Q ss_conf 99985699998379999996-29
Q 000406 703 TLALVGTSGGGKSTVFALIE-RF 724 (1560)
Q Consensus 703 ~~aivG~sGsGKSTl~~ll~-g~ 724 (1560)
+++++|..|+|||||++-+. +.
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~~ 27 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999919899999997299
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.66 E-value=0.54 Score=19.39 Aligned_cols=27 Identities=19% Similarity=0.067 Sum_probs=24.0
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 742998999856999983799999962
Q 000406 697 VIPSSKTLALVGTSGGGKSTVFALIER 723 (1560)
Q Consensus 697 ~i~~G~~~aivG~sGsGKSTl~~ll~g 723 (1560)
-|++|+.+.|.|++|||||++..-++.
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 976897999988998878899999999
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=82.64 E-value=0.74 Score=18.19 Aligned_cols=29 Identities=21% Similarity=0.393 Sum_probs=23.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 98999856999983799999962989996
Q 000406 701 SKTLALVGTSGGGKSTVFALIERFYDPTK 729 (1560)
Q Consensus 701 G~~~aivG~sGsGKSTl~~ll~g~~~~~~ 729 (1560)
...+.|.||+|+||||+++.+...+....
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l~~~~ 71 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELYKDKT 71 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTTSC
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHCCC
T ss_conf 88168889899989999999999975446
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=82.62 E-value=0.46 Score=20.01 Aligned_cols=12 Identities=25% Similarity=0.382 Sum_probs=6.7
Q ss_pred CCEEEEECCCCC
Q ss_conf 987998277889
Q 000406 830 PRILLLDEPTSA 841 (1560)
Q Consensus 830 ~~iliLDE~ts~ 841 (1560)
|.|+++||.=+.
T Consensus 116 ~~IIf~DEIdki 127 (309)
T d1ofha_ 116 NGIVFIDEIDKI 127 (309)
T ss_dssp HCEEEEECGGGG
T ss_pred CCEEEEHHHHHH
T ss_conf 856884246454
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.41 E-value=0.52 Score=19.55 Aligned_cols=21 Identities=38% Similarity=0.667 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999856999983799999962
Q 000406 703 TLALVGTSGGGKSTVFALIER 723 (1560)
Q Consensus 703 ~~aivG~sGsGKSTl~~ll~g 723 (1560)
+++++|+.|+|||||++-+.+
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999098999999982
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=82.41 E-value=0.54 Score=19.38 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999856999983799999962989
Q 000406 703 TLALVGTSGGGKSTVFALIERFYD 726 (1560)
Q Consensus 703 ~~aivG~sGsGKSTl~~ll~g~~~ 726 (1560)
.+++||.-.||||||+++|+|.--
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~~ 49 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRDF 49 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSCC
T ss_pred EEEEEECCCCCHHHHHHHHHCCCC
T ss_conf 599981898979999999968997
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=82.35 E-value=0.47 Score=19.91 Aligned_cols=110 Identities=18% Similarity=0.116 Sum_probs=52.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCEEEECCCCCCCCCCHHHHHHCCCCCCCHHHHH
Q ss_conf 99999599998889999996256898328999998557889888752318882788899756899971499999999999
Q 000406 1344 MVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKASWAEIE 1423 (1560)
Q Consensus 1344 ~vaIVG~SGSGKSTLi~LL~gl~~p~~G~I~IdG~dI~~i~~~~lR~~Ia~VpQd~~LF~gTIreNI~~g~~~~sd~eI~ 1423 (1560)
++.|+|+.||||||+.+.|..-|.- ..++. . +-+|+... ...-....+++-+.-+. -.+++.+.
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~~~----~~i~~---~----~llr~~~~----~~~~~~~~i~~~~~~g~-~~~d~~v~ 65 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKYGI----PQIST---G----DMLRAAVK----SGSELGKQAKDIMDAGK-LVTDELVI 65 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCC----CEEEH---H----HHHHHHHH----HTCTTTGGGHHHHHHTC-CCCHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC----CEECH---H----HHHHHHHC----CCCHHHHHHHHHHHCCC-CCCCHHHH
T ss_conf 8999879999989999999998699----55510---1----47677550----39858999999997699-87116399
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC-EEEEECC
Q ss_conf 9999992899998099983020028999779579999999999815997-8998578
Q 000406 1424 EAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSR-VLLLDEA 1479 (1560)
Q Consensus 1424 ~al~~a~l~d~I~~LP~GldT~Ige~G~~LSGGQkQRLaLARALL~~p~-ILILDEa 1479 (1560)
..+.. .+.. +..-+..+-++ .--+. .|--++.... .+|+ ++.||=+
T Consensus 66 ~~~~~-----~~~~-~~~~~g~i~~g-~pr~~--~~~~~~~~~~-~~~~~vi~L~~~ 112 (179)
T d1e4va1 66 ALVKE-----RIAQ-EDCRNGFLLDG-FPRTI--PQADAMKEAG-INVDYVLEFDVP 112 (179)
T ss_dssp HHHHH-----HHTS-GGGGGCEEEES-CCCSH--HHHHHHHHTT-CCCSEEEEEECC
T ss_pred HHHHH-----HHCC-CCCCCCEEECC-CCCCH--HHHHHHHHCC-CCCEEEEEECCC
T ss_conf 99998-----5225-21016634224-45305--7765544406-870399984462
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=82.31 E-value=0.49 Score=19.72 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99985699998379999996298
Q 000406 703 TLALVGTSGGGKSTVFALIERFY 725 (1560)
Q Consensus 703 ~~aivG~sGsGKSTl~~ll~g~~ 725 (1560)
.+++||...||||||+++|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 69997689897999999996898
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=82.31 E-value=0.45 Score=20.04 Aligned_cols=21 Identities=24% Similarity=0.510 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999856999983799999962
Q 000406 703 TLALVGTSGGGKSTVFALIER 723 (1560)
Q Consensus 703 ~~aivG~sGsGKSTl~~ll~g 723 (1560)
+++++|+.|+|||||++-+.+
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999899999999964
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=82.26 E-value=0.69 Score=18.44 Aligned_cols=26 Identities=19% Similarity=0.305 Sum_probs=22.8
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 74299899985699998379999996
Q 000406 697 VIPSSKTLALVGTSGGGKSTVFALIE 722 (1560)
Q Consensus 697 ~i~~G~~~aivG~sGsGKSTl~~ll~ 722 (1560)
=+++|+.+.|.|++||||||+..-++
T Consensus 32 Glp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 32 GIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 95588799998589898899999999
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=82.24 E-value=0.53 Score=19.48 Aligned_cols=21 Identities=24% Similarity=0.408 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999856999983799999962
Q 000406 703 TLALVGTSGGGKSTVFALIER 723 (1560)
Q Consensus 703 ~~aivG~sGsGKSTl~~ll~g 723 (1560)
+++++|.+|+|||||++-+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899598999999982
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.22 E-value=0.59 Score=19.05 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999856999983799999962989
Q 000406 703 TLALVGTSGGGKSTVFALIERFYD 726 (1560)
Q Consensus 703 ~~aivG~sGsGKSTl~~ll~g~~~ 726 (1560)
+++++|.+|+|||||++.+.+...
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~~ 26 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVED 26 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999989899399999999818856
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=82.19 E-value=0.43 Score=20.21 Aligned_cols=25 Identities=32% Similarity=0.456 Sum_probs=21.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3999995999988899999962568
Q 000406 1343 SMVALVGGSGSGKSTVIWLIQRFYD 1367 (1560)
Q Consensus 1343 e~vaIVG~SGSGKSTLi~LL~gl~~ 1367 (1560)
..+.|.|++||||||+++.|...+.
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 1999989899898999999999998
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.19 E-value=0.54 Score=19.36 Aligned_cols=45 Identities=18% Similarity=0.091 Sum_probs=29.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCEEEECCCCCCCCC
Q ss_conf 9999959999888999999625689832899999855788988875231888278889975
Q 000406 1344 MVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQEPALFAG 1404 (1560)
Q Consensus 1344 ~vaIVG~SGSGKSTLi~LL~gl~~p~~G~I~IdG~dI~~i~~~~lR~~Ia~VpQd~~LF~g 1404 (1560)
.|||.|+.||||||+...|...+.- .......+++++.|.+-.+.
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L~~----------------~~~~~~~v~~iS~DdfY~t~ 73 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHLME----------------KYGGEKSIGYASIDDFYLTH 73 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHH----------------HHGGGSCEEEEEGGGGBCCH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH----------------HHCCCCCEEEECCCCCCCCH
T ss_conf 9983799878899999999999998----------------72778606763567777888
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.16 E-value=0.77 Score=18.05 Aligned_cols=21 Identities=38% Similarity=0.563 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999856999983799999962
Q 000406 703 TLALVGTSGGGKSTVFALIER 723 (1560)
Q Consensus 703 ~~aivG~sGsGKSTl~~ll~g 723 (1560)
+++++|+.|+|||||++-+..
T Consensus 8 KivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999098999999961
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=82.12 E-value=0.53 Score=19.41 Aligned_cols=21 Identities=38% Similarity=0.526 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999856999983799999962
Q 000406 703 TLALVGTSGGGKSTVFALIER 723 (1560)
Q Consensus 703 ~~aivG~sGsGKSTl~~ll~g 723 (1560)
+++++|++|+|||||++.+.+
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999898999999971
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=82.09 E-value=0.71 Score=18.34 Aligned_cols=26 Identities=19% Similarity=0.299 Sum_probs=23.2
Q ss_pred ECCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 42998999856999983799999962
Q 000406 698 IPSSKTLALVGTSGGGKSTVFALIER 723 (1560)
Q Consensus 698 i~~G~~~aivG~sGsGKSTl~~ll~g 723 (1560)
+++|+.+.|.|++|+|||+++.-++-
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 62885999991799998999999999
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=82.04 E-value=0.49 Score=19.78 Aligned_cols=24 Identities=38% Similarity=0.418 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995999988899999962568
Q 000406 1344 MVALVGGSGSGKSTVIWLIQRFYD 1367 (1560)
Q Consensus 1344 ~vaIVG~SGSGKSTLi~LL~gl~~ 1367 (1560)
++.++|++||||||+.++|+..+.
T Consensus 3 ~IvliG~~G~GKSTig~~La~~l~ 26 (165)
T d2iyva1 3 KAVLVGLPGSGKSTIGRRLAKALG 26 (165)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 489988999988999999999849
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=82.03 E-value=0.51 Score=19.59 Aligned_cols=23 Identities=17% Similarity=0.297 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599998889999996256
Q 000406 1344 MVALVGGSGSGKSTVIWLIQRFY 1366 (1560)
Q Consensus 1344 ~vaIVG~SGSGKSTLi~LL~gl~ 1366 (1560)
.|||+|+.++|||||++.|.+.-
T Consensus 7 nIaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 7 NLGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEEECCCCCHHHHHHHHHHHC
T ss_conf 99999077870999999999743
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=82.00 E-value=0.75 Score=18.14 Aligned_cols=32 Identities=22% Similarity=0.318 Sum_probs=24.8
Q ss_pred CCCCCEE-EECCCCEEEEECCCCCCHHHHHHHH
Q ss_conf 3222026-7429989998569999837999999
Q 000406 690 ILRSLNL-VIPSSKTLALVGTSGGGKSTVFALI 721 (1560)
Q Consensus 690 vL~~isl-~i~~G~~~aivG~sGsGKSTl~~ll 721 (1560)
-|+++-- -+++|+.+.|.|++|+|||+|+.-+
T Consensus 14 ~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~ 46 (242)
T d1tf7a1 14 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQF 46 (242)
T ss_dssp THHHHTTSSEETTSEEEEEESTTSSHHHHHHHH
T ss_pred HHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHH
T ss_conf 798855689969839999947999999999999
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.99 E-value=0.78 Score=18.00 Aligned_cols=24 Identities=33% Similarity=0.527 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999856999983799999962989
Q 000406 703 TLALVGTSGGGKSTVFALIERFYD 726 (1560)
Q Consensus 703 ~~aivG~sGsGKSTl~~ll~g~~~ 726 (1560)
++.++|..|+|||||++.+.+...
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~~ 28 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVHD 28 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 999999899299999999972867
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=81.95 E-value=0.64 Score=18.74 Aligned_cols=162 Identities=14% Similarity=0.055 Sum_probs=73.4
Q ss_pred CEEEEEE-EEECCCEEEEECCCCCCHHHHHH-HHHCCCCCCCCEEEECCEECCCCCHHHHHHCEEEECCCCCCCCCCHHH
Q ss_conf 0010059-99589399999599998889999-996256898328999998557889888752318882788899756899
Q 000406 1331 VLKDFCL-KVKGGSMVALVGGSGSGKSTVIW-LIQRFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQEPALFAGTIRD 1408 (1560)
Q Consensus 1331 vL~nIsl-~I~~Ge~vaIVG~SGSGKSTLi~-LL~gl~~p~~G~I~IdG~dI~~i~~~~lR~~Ia~VpQd~~LF~gTIre 1408 (1560)
-|+++-- -+++|+.+-|.|++|+|||+++. ++..........+++.. .+.+.+.++..
T Consensus 14 ~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~~~~~~~~~~~~~~~s---~e~~~~~~~~~----------------- 73 (242)
T d1tf7a1 14 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVT---FEETPQDIIKN----------------- 73 (242)
T ss_dssp THHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEE---SSSCHHHHHHH-----------------
T ss_pred HHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCC---CCCCHHHHHHH-----------------
T ss_conf 7988556899698399999479999999999999999985688742012---66799999999-----------------
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHH-HHHHHHHHHHCC--CCCEEEEECCCCCCCH
Q ss_conf 9714999999999999999992899998099983020028999779579-999999999815--9978998578858799
Q 000406 1409 NIALGNPKASWAEIEEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQ-KQRIAIARAILK--GSRVLLLDEASSALDL 1485 (1560)
Q Consensus 1409 NI~~g~~~~sd~eI~~al~~a~l~d~I~~LP~GldT~Ige~G~~LSGGQ-kQRLaLARALL~--~p~ILILDEaTSaLD~ 1485 (1560)
..-. ....++..... . ...-......+.-..+.... ...+.-.+..++ +|+++++|--++-.+.
T Consensus 74 -~~~~--~~~~~~~~~~~---~-------~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~viiD~~~~l~~~ 140 (242)
T d1tf7a1 74 -ARSF--GWDLAKLVDEG---K-------LFILDASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQ 140 (242)
T ss_dssp -HGGG--TCCHHHHHHTT---S-------EEEEECCCCSSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTT
T ss_pred -HHHC--CCCHHHHHHHC---C-------HHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf -9984--99848988714---3-------024442103354444302458999999999988631222002078899876
Q ss_pred ----HHHHHHHHHHHHH--CCCCEEEEEECCHHH---------H-HHCCEEEEEEC
Q ss_conf ----9999999999983--489659998269577---------8-62388999969
Q 000406 1486 ----ESEKHVQDALRKV--SKRATTIVVAHRLST---------I-REANMIAVVRD 1525 (1560)
Q Consensus 1486 ----~tE~~I~~~L~~~--~~~~TVIvIaHRlst---------i-~~aDrIiVL~~ 1525 (1560)
.........+.+. ..++|+++++|.... . ..+|.++.+..
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~ 196 (242)
T d1tf7a1 141 YDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRN 196 (242)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEECCEEEEEEE
T ss_conf 05726789999999999986397168842102554222467623353629999887
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.84 E-value=0.79 Score=17.96 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999856999983799999962
Q 000406 703 TLALVGTSGGGKSTVFALIER 723 (1560)
Q Consensus 703 ~~aivG~sGsGKSTl~~ll~g 723 (1560)
+++++|.+|+|||||++-+.+
T Consensus 8 KI~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999799999999984
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=81.83 E-value=0.57 Score=19.18 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599998889999996256
Q 000406 1344 MVALVGGSGSGKSTVIWLIQRFY 1366 (1560)
Q Consensus 1344 ~vaIVG~SGSGKSTLi~LL~gl~ 1366 (1560)
++.|.|+.||||||+.+.|..-|
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999799999999998
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=81.82 E-value=0.79 Score=17.96 Aligned_cols=29 Identities=31% Similarity=0.408 Sum_probs=22.6
Q ss_pred CEEEEECCCCCCHHHHHHHHH-CCCCCCCC
Q ss_conf 899985699998379999996-29899964
Q 000406 702 KTLALVGTSGGGKSTVFALIE-RFYDPTKG 730 (1560)
Q Consensus 702 ~~~aivG~sGsGKSTl~~ll~-g~~~~~~G 730 (1560)
-++.++|.+|+|||||++-+. +...|+-|
T Consensus 7 ~KilllG~~~vGKTsll~~~~~~~~~pTiG 36 (221)
T d1azta2 7 HRLLLLGAGESGKSTIVKQMRILHVVLTSG 36 (221)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCC
T ss_conf 779999899998899999895098278888
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=81.80 E-value=0.59 Score=19.02 Aligned_cols=30 Identities=20% Similarity=0.138 Sum_probs=22.8
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 742998999856999983799999962989
Q 000406 697 VIPSSKTLALVGTSGGGKSTVFALIERFYD 726 (1560)
Q Consensus 697 ~i~~G~~~aivG~sGsGKSTl~~ll~g~~~ 726 (1560)
..++|..+++.|+-||||||+++.+++-+.
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg 58 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 579982999966877658899999876422
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=81.77 E-value=0.52 Score=19.50 Aligned_cols=33 Identities=18% Similarity=0.189 Sum_probs=28.2
Q ss_pred CCEEEECCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 202674299899985699998379999996298
Q 000406 693 SLNLVIPSSKTLALVGTSGGGKSTVFALIERFY 725 (1560)
Q Consensus 693 ~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~ 725 (1560)
|.=+.|.+||+.+|+|++|+|||+|+.-+.+-.
T Consensus 35 D~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~ 67 (289)
T d1xpua3 35 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 67 (289)
T ss_dssp HHHSCCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred EECCCCCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 412564578755686799988789999999977
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.76 E-value=0.65 Score=18.67 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999856999983799999962989
Q 000406 703 TLALVGTSGGGKSTVFALIERFYD 726 (1560)
Q Consensus 703 ~~aivG~sGsGKSTl~~ll~g~~~ 726 (1560)
.+.+.||+|+||||+++++++.+.
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 499987999988899999999987
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.76 E-value=0.52 Score=19.53 Aligned_cols=21 Identities=33% Similarity=0.504 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999856999983799999962
Q 000406 703 TLALVGTSGGGKSTVFALIER 723 (1560)
Q Consensus 703 ~~aivG~sGsGKSTl~~ll~g 723 (1560)
+++++|++|+|||||++-+.+
T Consensus 5 Ki~viG~~~vGKTsli~~l~~ 25 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999799899999999980
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.73 E-value=0.6 Score=18.98 Aligned_cols=27 Identities=11% Similarity=0.171 Sum_probs=24.3
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 995893999995999988899999962
Q 000406 1338 KVKGGSMVALVGGSGSGKSTVIWLIQR 1364 (1560)
Q Consensus 1338 ~I~~Ge~vaIVG~SGSGKSTLi~LL~g 1364 (1560)
-|++|+.+.|.|++|+|||++..-++.
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 976897999988998878899999999
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=81.62 E-value=0.6 Score=18.98 Aligned_cols=27 Identities=15% Similarity=0.134 Sum_probs=22.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 299899985699998379999996298
Q 000406 699 PSSKTLALVGTSGGGKSTVFALIERFY 725 (1560)
Q Consensus 699 ~~G~~~aivG~sGsGKSTl~~ll~g~~ 725 (1560)
..+..+.|.|+.|+|||||++-++...
T Consensus 27 ~~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 27 LRAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp TCSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 059879998699982999999999977
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.61 E-value=0.56 Score=19.24 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=21.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999959999888999999625689
Q 000406 1344 MVALVGGSGSGKSTVIWLIQRFYDP 1368 (1560)
Q Consensus 1344 ~vaIVG~SGSGKSTLi~LL~gl~~p 1368 (1560)
.+-+.||+|+||||+++++++.+.-
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~~~ 78 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQELGY 78 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 4999879999888999999999875
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=81.51 E-value=0.55 Score=19.28 Aligned_cols=26 Identities=19% Similarity=0.401 Sum_probs=23.0
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 99589399999599998889999996
Q 000406 1338 KVKGGSMVALVGGSGSGKSTVIWLIQ 1363 (1560)
Q Consensus 1338 ~I~~Ge~vaIVG~SGSGKSTLi~LL~ 1363 (1560)
-+++|+.+-|.|++|+||||+..-++
T Consensus 32 Glp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 32 GIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 95588799998589898899999999
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=81.48 E-value=0.24 Score=22.49 Aligned_cols=25 Identities=32% Similarity=0.400 Sum_probs=21.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9399999599998889999996256
Q 000406 1342 GSMVALVGGSGSGKSTVIWLIQRFY 1366 (1560)
Q Consensus 1342 Ge~vaIVG~SGSGKSTLi~LL~gl~ 1366 (1560)
.-+|+|+|++++|||||++.|.+.-
T Consensus 16 ~~~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 16 GIEVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9789998899998999999985898
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=81.39 E-value=0.56 Score=19.21 Aligned_cols=26 Identities=31% Similarity=0.543 Sum_probs=21.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 98999856999983799999962989
Q 000406 701 SKTLALVGTSGGGKSTVFALIERFYD 726 (1560)
Q Consensus 701 G~~~aivG~sGsGKSTl~~ll~g~~~ 726 (1560)
.-.+.|+|+.||||||+.+.|..-|.
T Consensus 6 ~mrIiliG~PGSGKtT~a~~La~~~g 31 (189)
T d2ak3a1 6 LLRAAIMGAPGSGKGTVSSRITKHFE 31 (189)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHBC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 21699988999987999999999979
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=81.38 E-value=0.81 Score=17.84 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=21.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 8999856999983799999962989
Q 000406 702 KTLALVGTSGGGKSTVFALIERFYD 726 (1560)
Q Consensus 702 ~~~aivG~sGsGKSTl~~ll~g~~~ 726 (1560)
.-+.+.||+|+|||++++.+.+...
T Consensus 43 ~giLl~GppGtGKT~la~aia~~~~ 67 (247)
T d1ixza_ 43 KGVLLVGPPGVGKTHLARAVAGEAR 67 (247)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 6488766898883599999998739
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=81.35 E-value=0.24 Score=22.48 Aligned_cols=10 Identities=20% Similarity=0.361 Sum_probs=5.0
Q ss_pred ECCCCEEEEE
Q ss_conf 4299899985
Q 000406 698 IPSSKTLALV 707 (1560)
Q Consensus 698 i~~G~~~aiv 707 (1560)
...|.++|++
T Consensus 79 ~~~g~~vavl 88 (327)
T d2p67a1 79 IREGLKVAVI 88 (327)
T ss_dssp HHTTCCEEEE
T ss_pred HHCCCCEEEE
T ss_conf 7569833220
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.27 E-value=0.59 Score=19.04 Aligned_cols=23 Identities=26% Similarity=0.221 Sum_probs=20.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 39999959999888999999625
Q 000406 1343 SMVALVGGSGSGKSTVIWLIQRF 1365 (1560)
Q Consensus 1343 e~vaIVG~SGSGKSTLi~LL~gl 1365 (1560)
..|+|+|+.|+|||||++.|.+-
T Consensus 1 k~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 1 RAVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 98999999998989999999809
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=81.10 E-value=0.65 Score=18.66 Aligned_cols=23 Identities=26% Similarity=0.518 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99985699998379999996298
Q 000406 703 TLALVGTSGGGKSTVFALIERFY 725 (1560)
Q Consensus 703 ~~aivG~sGsGKSTl~~ll~g~~ 725 (1560)
+++|.|.-||||||+++.|...+
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l 24 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998998789999999999999
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.02 E-value=0.63 Score=18.78 Aligned_cols=21 Identities=24% Similarity=0.430 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999856999983799999962
Q 000406 703 TLALVGTSGGGKSTVFALIER 723 (1560)
Q Consensus 703 ~~aivG~sGsGKSTl~~ll~g 723 (1560)
+++++|.+|+|||||++-+.+
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~ 25 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899399999999971
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=80.88 E-value=0.64 Score=18.72 Aligned_cols=22 Identities=32% Similarity=0.388 Sum_probs=16.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 8999856999983799999962
Q 000406 702 KTLALVGTSGGGKSTVFALIER 723 (1560)
Q Consensus 702 ~~~aivG~sGsGKSTl~~ll~g 723 (1560)
..++|+|.-||||||+++.|..
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 8999979999889999999998
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=80.88 E-value=0.63 Score=18.79 Aligned_cols=22 Identities=55% Similarity=0.717 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999888999999625
Q 000406 1344 MVALVGGSGSGKSTVIWLIQRF 1365 (1560)
Q Consensus 1344 ~vaIVG~SGSGKSTLi~LL~gl 1365 (1560)
.|||+|..||||||+++.|..+
T Consensus 5 iIgitG~igSGKStv~~~l~~~ 26 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFADL 26 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9997898868899999999987
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=80.87 E-value=0.58 Score=19.11 Aligned_cols=26 Identities=23% Similarity=0.371 Sum_probs=21.9
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 58939999959999888999999625
Q 000406 1340 KGGSMVALVGGSGSGKSTVIWLIQRF 1365 (1560)
Q Consensus 1340 ~~Ge~vaIVG~SGSGKSTLi~LL~gl 1365 (1560)
++.=+|.+||..|+|||||++-|.+-
T Consensus 13 ~k~~kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 13 HQEHKVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 98579999999998989999999668
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.84 E-value=0.63 Score=18.78 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9998569999837999999629
Q 000406 703 TLALVGTSGGGKSTVFALIERF 724 (1560)
Q Consensus 703 ~~aivG~sGsGKSTl~~ll~g~ 724 (1560)
++++||++|+|||||++-+.+-
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999993999999999629
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=80.71 E-value=0.85 Score=17.67 Aligned_cols=26 Identities=23% Similarity=0.425 Sum_probs=19.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89399999599998889999996256
Q 000406 1341 GGSMVALVGGSGSGKSTVIWLIQRFY 1366 (1560)
Q Consensus 1341 ~Ge~vaIVG~SGSGKSTLi~LL~gl~ 1366 (1560)
+...+++|||+|+||||.+.=|+..+
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa~~ 35 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAKMF 35 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99899998999998899999999999
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.55 E-value=0.6 Score=18.96 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9998569999837999999629
Q 000406 703 TLALVGTSGGGKSTVFALIERF 724 (1560)
Q Consensus 703 ~~aivG~sGsGKSTl~~ll~g~ 724 (1560)
+++++|.+|+|||||++-+..-
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999996789999999868
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.44 E-value=0.66 Score=18.60 Aligned_cols=21 Identities=19% Similarity=0.300 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999856999983799999962
Q 000406 703 TLALVGTSGGGKSTVFALIER 723 (1560)
Q Consensus 703 ~~aivG~sGsGKSTl~~ll~g 723 (1560)
+++++|.+|+|||||++-+..
T Consensus 7 KivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999799999999974
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=80.43 E-value=0.51 Score=19.56 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=22.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 999856999983799999962989996
Q 000406 703 TLALVGTSGGGKSTVFALIERFYDPTK 729 (1560)
Q Consensus 703 ~~aivG~sGsGKSTl~~ll~g~~~~~~ 729 (1560)
.+.+.||+|+||||+++++...+....
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~~~~ 63 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQTNI 63 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCC
T ss_conf 489879999738899999985038885
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.42 E-value=0.73 Score=18.26 Aligned_cols=23 Identities=26% Similarity=0.537 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99985699998379999996298
Q 000406 703 TLALVGTSGGGKSTVFALIERFY 725 (1560)
Q Consensus 703 ~~aivG~sGsGKSTl~~ll~g~~ 725 (1560)
++.|.|+.||||||+.+.|.-.+
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998999999899999999996
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=80.27 E-value=0.66 Score=18.61 Aligned_cols=29 Identities=21% Similarity=0.251 Sum_probs=24.9
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99589399999599998889999996256
Q 000406 1338 KVKGGSMVALVGGSGSGKSTVIWLIQRFY 1366 (1560)
Q Consensus 1338 ~I~~Ge~vaIVG~SGSGKSTLi~LL~gl~ 1366 (1560)
-+++|+.+-|.|++|+||||++.-++--.
T Consensus 30 Gl~~G~l~~i~G~~G~GKT~~~l~~a~~~ 58 (258)
T d2i1qa2 30 GLESQSVTEFAGVFGSGKTQIMHQSCVNL 58 (258)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 86288599999179999899999999999
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=80.17 E-value=0.7 Score=18.39 Aligned_cols=110 Identities=19% Similarity=0.198 Sum_probs=56.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCEEEECCCCCCCCCCHHHHHHCCCCCCCHHHH
Q ss_conf 39999959999888999999625689832899999855788988875231888278889975689997149999999999
Q 000406 1343 SMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKASWAEI 1422 (1560)
Q Consensus 1343 e~vaIVG~SGSGKSTLi~LL~gl~~p~~G~I~IdG~dI~~i~~~~lR~~Ia~VpQd~~LF~gTIreNI~~g~~~~sd~eI 1422 (1560)
=++.|+|+-||||||+.+.|+.-|. -..|+ . -+-+|+.+ +....+...+.+.+.-+. ..+++.+
T Consensus 7 mrIiliG~PGSGKtT~a~~La~~~g----~~~is---~----gdllr~~~----~~~~~~~~~~~~~~~~~~-~v~~~~~ 70 (189)
T d2ak3a1 7 LRAAIMGAPGSGKGTVSSRITKHFE----LKHLS---S----GDLLRDNM----LRGTEIGVLAKTFIDQGK-LIPDDVM 70 (189)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHBC----CEEEE---H----HHHHHHHH----HTTCHHHHHHHHHHHTTC-CCCHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC----CEEEC---H----HHHHHHHH----HHHHHHHHHHHHHHHHHH-HCCCHHH
T ss_conf 1699988999987999999999979----86871---8----99999998----740156689998763664-1330344
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 999999928999980999830200289997795799999999998159978998578
Q 000406 1423 EEAAEEAYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVLLLDEA 1479 (1560)
Q Consensus 1423 ~~al~~a~l~d~I~~LP~GldT~Ige~G~~LSGGQkQRLaLARALL~~p~ILILDEa 1479 (1560)
....+.. +. .. ......+. | +-.-..|.-.+.+ .+....++.||-+
T Consensus 71 ~~l~~~~-~~----~~-~~~~~ild--G--fPr~~~q~~~l~~-~~~~~~vi~L~v~ 116 (189)
T d2ak3a1 71 TRLVLHE-LK----NL-TQYNWLLD--G--FPRTLPQAEALDR-AYQIDTVINLNVP 116 (189)
T ss_dssp HHHHHHH-HH----HH-TTSCEEEE--S--CCCSHHHHHHHHT-TCCCCEEEEEECC
T ss_pred HHHHHHH-HH----HH-HHCCCCCC--C--CCCHHHHHHHHHH-CCCCEEEEEEECC
T ss_conf 5445554-42----12-10584244--5--2100067887631-5753299997244
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.13 E-value=0.64 Score=18.76 Aligned_cols=21 Identities=24% Similarity=0.539 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999856999983799999962
Q 000406 703 TLALVGTSGGGKSTVFALIER 723 (1560)
Q Consensus 703 ~~aivG~sGsGKSTl~~ll~g 723 (1560)
+++++|.+|+|||||++-+..
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999198999999972
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=80.02 E-value=0.73 Score=18.27 Aligned_cols=25 Identities=36% Similarity=0.501 Sum_probs=16.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 9999599998889999996256898
Q 000406 1345 VALVGGSGSGKSTVIWLIQRFYDPN 1369 (1560)
Q Consensus 1345 vaIVG~SGSGKSTLi~LL~gl~~p~ 1369 (1560)
+-+.||.|+||||++++|+.-+...
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~~~~ 62 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASELQTN 62 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCC
T ss_conf 8987999973889999998503888
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=80.02 E-value=0.89 Score=17.50 Aligned_cols=28 Identities=39% Similarity=0.602 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHH--CCCCCCCC
Q ss_conf 99985699998379999996--29899964
Q 000406 703 TLALVGTSGGGKSTVFALIE--RFYDPTKG 730 (1560)
Q Consensus 703 ~~aivG~sGsGKSTl~~ll~--g~~~~~~G 730 (1560)
++.++|.+|+|||||++-+. ..+.|+-|
T Consensus 4 KivllG~~~vGKTsll~r~~f~~~~~pTiG 33 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMRIIHGQDPTKG 33 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCEEE
T ss_conf 999998999998999998846898887241
|