Citrus Sinensis ID: 000409
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1555 | 2.2.26 [Sep-21-2011] | |||||||
| Q6WWW4 | 1888 | E3 ubiquitin-protein liga | yes | no | 0.990 | 0.815 | 0.757 | 0.0 | |
| Q9LYZ7 | 1502 | E3 ubiquitin-protein liga | no | no | 0.396 | 0.410 | 0.455 | 1e-149 | |
| F1RCR6 | 2026 | E3 ubiquitin-protein liga | yes | no | 0.402 | 0.308 | 0.384 | 1e-122 | |
| E1B7Q7 | 1992 | E3 ubiquitin-protein liga | yes | no | 0.408 | 0.318 | 0.386 | 1e-121 | |
| Q14669 | 1992 | E3 ubiquitin-protein liga | yes | no | 0.408 | 0.318 | 0.385 | 1e-120 | |
| F1LP64 | 2025 | E3 ubiquitin-protein liga | yes | no | 0.407 | 0.313 | 0.385 | 1e-120 | |
| G5E870 | 2025 | E3 ubiquitin-protein liga | yes | no | 0.407 | 0.313 | 0.384 | 1e-119 | |
| B4F6W9 | 2056 | E3 ubiquitin-protein liga | yes | no | 0.407 | 0.308 | 0.376 | 1e-118 | |
| P33202 | 1483 | Ubiquitin fusion degradat | yes | no | 0.309 | 0.325 | 0.378 | 5e-91 | |
| Q10435 | 1647 | Probable ubiquitin fusion | yes | no | 0.292 | 0.276 | 0.380 | 4e-86 |
| >sp|Q6WWW4|UPL3_ARATH E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana GN=UPL3 PE=1 SV=1 | Back alignment and function desciption |
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Score = 2226 bits (5769), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1179/1557 (75%), Positives = 1329/1557 (85%), Gaps = 17/1557 (1%)
Query: 1 MCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHG 60
MCKKLPSDA+D+VMEAVPLLTNLLQYHD+KVLE+AS+CLTRIAEAFA P+KLDELCNHG
Sbjct: 347 MCKKLPSDASDYVMEAVPLLTNLLQYHDSKVLEYASICLTRIAEAFAPYPEKLDELCNHG 406
Query: 61 LVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDIL 120
LVTQAA+LISTSNSGGGQASLS TYTGLIRLLSTCASGSPL +TLL LGIS ILKDIL
Sbjct: 407 LVTQAASLISTSNSGGGQASLSVSTYTGLIRLLSTCASGSPLGFRTLLLLGISSILKDIL 466
Query: 121 SGSGVSANSAVPPALSRPAEQIFEIVNLANELLPPLPQGTISLPSSSNMFVKGPVVRKSP 180
GSGVSAN++V PALSRPA+QI+EIVNLANELLPPLP+G ISLP+S+N VKG +KS
Sbjct: 467 LGSGVSANASVSPALSRPADQIYEIVNLANELLPPLPEGVISLPTSTNALVKGSCQKKSS 526
Query: 181 ASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLS 240
S+SGKQ+D ++S REKLL DQPELLQQFG+DLLPVL+QIYGSSVN +RHKCLS
Sbjct: 527 PSTSGKQEDI----LKISPREKLLGDQPELLQQFGLDLLPVLVQIYGSSVNGTIRHKCLS 582
Query: 241 VIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEKLPGTFSKM 300
VIGKLMYFSS+EMIQSL+ TNISSFLAGVLAWKDP VL+P+LQ+AEILMEKLP TFSK+
Sbjct: 583 VIGKLMYFSSSEMIQSLIGDTNISSFLAGVLAWKDPQVLVPALQVAEILMEKLPETFSKV 642
Query: 301 FVREGVVHAVDQLILAGNTNTVPSQASSADKDNDSIPGSSRSRRYRRRSGNANPECNSSE 360
FVREGVVHAVDQL+L G PS AS DKDND +PGS+RSRRYRRRS NAN + N SE
Sbjct: 643 FVREGVVHAVDQLVLVGK----PSHASPTDKDNDCVPGSARSRRYRRRSSNANSDGNQSE 698
Query: 361 ESKNPVSVNVGSPPSSVEIPTVNSNLRSAVSASAKAFKEKYFPSDPGAAEVGVTDHLLHI 420
E KNP S+ +G+ +S++ PT + LR VS+ AKAFK+KYFPSD G +VGVTD LLH+
Sbjct: 699 EPKNPASLTIGANHNSLDTPTASFMLRETVSSCAKAFKDKYFPSDGGDVDVGVTDDLLHL 758
Query: 421 KNLCMKLNAGVDDQRTKAKGKSKASGSRLADISATKEEYLIGVISEMLAELSTGDGVSTF 480
KNLC KL AG+DD + K KGKSKASG L D SA+KEEYLIGVISE+L E+S GDGVSTF
Sbjct: 759 KNLCTKLTAGIDDHKVKGKGKSKASGPFLGDFSASKEEYLIGVISEILGEISKGDGVSTF 818
Query: 481 EFIGSGVVAALLNYFSCGY--KERMSEANMLKLRQQALKRFKSFIAVALPNSLDAGDVAP 538
EFIGSGVVAALLNYFSCGY KE++SE N+ KLRQ+ L+RFK+F+ VALP + G V P
Sbjct: 819 EFIGSGVVAALLNYFSCGYFSKEKISELNLPKLRQEGLRRFKAFLEVALPFDGNEGKVPP 878
Query: 539 MTVLVQKLQNALSSLERFPVVLSHSARSSTGSARLSSGLSALSQPFKLRLCRAQGDKSLR 598
MTVL+QKLQNALSSLERFPVVLSH +RS +GSARLSSGLSAL+ P KLRLCRA G+K+LR
Sbjct: 879 MTVLIQKLQNALSSLERFPVVLSHPSRSLSGSARLSSGLSALAHPLKLRLCRASGEKTLR 938
Query: 599 DYSSNVVLIDPLASLAAVEEFLWPRVQRNESGQKPSASVGNSESGTAPTGAGASSPSTST 658
DYSSN+VLIDPLASLAAVEEFLWPRVQR+ES KP+A +GN+E GT P+GAG SSPS+ST
Sbjct: 939 DYSSNIVLIDPLASLAAVEEFLWPRVQRSESALKPAAPIGNTEPGTLPSGAGVSSPSSST 998
Query: 659 PASSALRHSSRSRLSVNIGDGMKKEPSQEKGTSSSKGKGKAVLKSAQEEVRGPQTRNAAR 718
PAS+ RHSSRSR ++NIGD KK+P EKGTSSSKGKGK V+K AQ + +GPQTR+ A+
Sbjct: 999 PASTTRRHSSRSRSAINIGDTSKKDPVHEKGTSSSKGKGKGVMKPAQAD-KGPQTRSNAQ 1057
Query: 719 RRAALDKDAQMKQANGDSSSEDEELDISPVEIDDALVIEDDDISDDEDDDHEDVLKDDSL 778
+RA LDKD QMK A+GDSSSEDEEL+ISPV+IDDALVIE+DDISDDEDDD+EDV DDSL
Sbjct: 1058 KRAVLDKDTQMKPASGDSSSEDEELEISPVDIDDALVIEEDDISDDEDDDNEDV-LDDSL 1116
Query: 779 PLCLSDKVHDVKLGDSAEDSTTVPSASDSQNNPASGSSSRGATGRGSDSADFRGGNSYGS 838
P+C DKVHDVKL DS +D + S Q NPASG +S A R SDS D GNSYGS
Sbjct: 1117 PMCTPDKVHDVKLADSVDDDGL--ATSGRQMNPASGGTSGAAAARASDSIDTGIGNSYGS 1174
Query: 839 RGAMSFAAAAMAGLGSANGRGVRGGRDRHGRPLFGSSNEPPKLIFTVGGKQLNRHLTIYQ 898
RGA+SFAAAAMAGLG+A+GRG+RG RD HGR L SS+EP KLIFT GKQL+RHLTIYQ
Sbjct: 1175 RGALSFAAAAMAGLGAASGRGIRGSRDLHGRTLNRSSDEPSKLIFTAAGKQLSRHLTIYQ 1234
Query: 899 AIQRQLVLDEDEDERFGGSDFISSDGSRLWNDIYTITYQRADSQADRMSAGVSSSATPSK 958
A+QRQL+LDED+D+RFGGSD +SSDGSR +NDIYTI YQR DSQ +R+S G +SS TPSK
Sbjct: 1235 AVQRQLMLDEDDDDRFGGSDLVSSDGSR-FNDIYTIMYQRPDSQVNRLSVGGASSTTPSK 1293
Query: 959 SSKSGSASNSNSDSASRMSLLDSILQGELPCDLEKSNPTYTILALLRVLEGLNQLAPRLR 1018
S+KS + ++S + R SLLDSILQGELPCDLEKSN TY +LALLRVLEGLNQL PRLR
Sbjct: 1294 STKSATTNSSVESQSHRASLLDSILQGELPCDLEKSNSTYNVLALLRVLEGLNQLCPRLR 1353
Query: 1019 AQTVCDSYAEGKISSLDELSGTGVRVPYEEFINSKLTPKLARQIQDALALCSGSLPSWCY 1078
AQT+ D +AEGKI+SLD+LS T +VP +EF+NSKLTPKLARQIQDALALCSGSLPSWCY
Sbjct: 1354 AQTLSDRFAEGKITSLDDLSTTAAKVPLDEFVNSKLTPKLARQIQDALALCSGSLPSWCY 1413
Query: 1079 QLTKACPFLFPFETRRQYFYSTAFGLSRALYRLQQQQGADGHGSVNEREIRVGRLERQKV 1138
QLT+ACPFLFPF+TRRQYFYSTAFGLSRAL RLQQQQGADG GS NERE+R+GRL+RQKV
Sbjct: 1414 QLTRACPFLFPFQTRRQYFYSTAFGLSRALNRLQQQQGADGSGSTNEREMRIGRLQRQKV 1473
Query: 1139 RVSRNRILDSAAKVMEMYSSQKAVLEVEYFGEVGTGLGPTLEFYTLLSRDLQRVGLAMWR 1198
RVSRNRILDSAAKVMEMYSSQKAVLEVEYFGEVGTGLGPTLEFYTLLS DLQ+ L MWR
Sbjct: 1474 RVSRNRILDSAAKVMEMYSSQKAVLEVEYFGEVGTGLGPTLEFYTLLSHDLQKASLGMWR 1533
Query: 1199 SNSSSENPSMEIDGDEGKSGKTSNISGDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYF 1258
S SS + SM+I DE + GK S + D+V APLGLFPRPWP +AD SEGGQF KVIEYF
Sbjct: 1534 S-SSGDKVSMQIGRDEIEDGKPSAANRDIVLAPLGLFPRPWPSTADISEGGQFHKVIEYF 1592
Query: 1259 RLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIVCRK 1318
RLLGRVMAKALQDGRLLD+P STAFYKL+LG ELDLHDI+ FDAE GK LQEL V+V RK
Sbjct: 1593 RLLGRVMAKALQDGRLLDVPLSTAFYKLILGQELDLHDIVLFDAELGKTLQELRVVVARK 1652
Query: 1319 QHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLPGYPDYILKPGDENVDINNLEEYISLV 1378
+LE + DN + DL RG IEDL L+FTLPGYP+YIL+ GDE VDI NLEEYISLV
Sbjct: 1653 HYLEGVGGDNSSTISDLCLRGCRIEDLSLEFTLPGYPEYILRSGDEIVDITNLEEYISLV 1712
Query: 1379 VDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFD 1438
VDATVK G+ RQ+EAFR+GFNQVFDITSLQIFTP ELD+LLCGRRELWE LAEHIKFD
Sbjct: 1713 VDATVKRGVTRQIEAFRSGFNQVFDITSLQIFTPSELDYLLCGRRELWEVETLAEHIKFD 1772
Query: 1439 HGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTA 1498
HGY AKSPAI+NLLEIMGE T DQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSST+
Sbjct: 1773 HGYNAKSPAIINLLEIMGELTADQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTS 1832
Query: 1499 PNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 1555
+ A+NG G SE+ADDDLPSVMTCANYLKLPPYSTKEIMYKKL+YAI+EGQGSFDLS
Sbjct: 1833 -SAAANGAGASETADDDLPSVMTCANYLKLPPYSTKEIMYKKLLYAINEGQGSFDLS 1888
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Probable E3 ubiquitin-protein ligase which mediates ubiquitination and subsequent proteasomal degradation of target proteins. Involved in the repression of endoreduplication process and the cell morphogenesis in the trichomes. Arabidopsis thaliana (taxid: 3702) EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: - |
| >sp|Q9LYZ7|UPL4_ARATH E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana GN=UPL4 PE=1 SV=1 | Back alignment and function description |
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| >sp|F1RCR6|TRIPC_DANRE E3 ubiquitin-protein ligase TRIP12 OS=Danio rerio GN=trip12 PE=2 SV=1 | Back alignment and function description |
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| >sp|E1B7Q7|TRIPC_BOVIN E3 ubiquitin-protein ligase TRIP12 OS=Bos taurus GN=TRIP12 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q14669|TRIPC_HUMAN E3 ubiquitin-protein ligase TRIP12 OS=Homo sapiens GN=TRIP12 PE=1 SV=1 | Back alignment and function description |
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| >sp|F1LP64|TRIPC_RAT E3 ubiquitin-protein ligase TRIP12 OS=Rattus norvegicus GN=Trip12 PE=2 SV=1 | Back alignment and function description |
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| >sp|G5E870|TRIPC_MOUSE E3 ubiquitin-protein ligase TRIP12 OS=Mus musculus GN=Trip12 PE=1 SV=1 | Back alignment and function description |
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| >sp|B4F6W9|TRIPC_XENTR E3 ubiquitin-protein ligase TRIP12 OS=Xenopus tropicalis GN=trip12 PE=2 SV=1 | Back alignment and function description |
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| >sp|P33202|UFD4_YEAST Ubiquitin fusion degradation protein 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UFD4 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q10435|YDE1_SCHPO Probable ubiquitin fusion degradation protein C12B10.01c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC12B10.01c PE=3 SV=2 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1555 | ||||||
| 255579971 | 1899 | hect ubiquitin-protein ligase, putative | 0.996 | 0.815 | 0.841 | 0.0 | |
| 225428013 | 1896 | PREDICTED: E3 ubiquitin-protein ligase U | 0.996 | 0.817 | 0.832 | 0.0 | |
| 225428015 | 1814 | PREDICTED: E3 ubiquitin-protein ligase U | 0.983 | 0.842 | 0.821 | 0.0 | |
| 356507840 | 1891 | PREDICTED: E3 ubiquitin-protein ligase U | 0.998 | 0.820 | 0.800 | 0.0 | |
| 356544882 | 1877 | PREDICTED: E3 ubiquitin-protein ligase U | 0.989 | 0.819 | 0.807 | 0.0 | |
| 356538640 | 1872 | PREDICTED: E3 ubiquitin-protein ligase U | 0.988 | 0.821 | 0.801 | 0.0 | |
| 356516547 | 1895 | PREDICTED: E3 ubiquitin-protein ligase U | 0.998 | 0.818 | 0.782 | 0.0 | |
| 449458610 | 1892 | PREDICTED: E3 ubiquitin-protein ligase U | 0.997 | 0.819 | 0.764 | 0.0 | |
| 357473823 | 1881 | E3 ubiquitin-protein ligase UPL3 [Medica | 0.990 | 0.818 | 0.776 | 0.0 | |
| 297801930 | 1884 | hypothetical protein ARALYDRAFT_912310 [ | 0.990 | 0.817 | 0.764 | 0.0 |
| >gi|255579971|ref|XP_002530820.1| hect ubiquitin-protein ligase, putative [Ricinus communis] gi|223529612|gb|EEF31560.1| hect ubiquitin-protein ligase, putative [Ricinus communis] | Back alignment and taxonomy information |
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Score = 2499 bits (6477), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1316/1564 (84%), Positives = 1421/1564 (90%), Gaps = 15/1564 (0%)
Query: 1 MCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHG 60
MCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFAS+P+KLDELCNHG
Sbjct: 342 MCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASAPEKLDELCNHG 401
Query: 61 LVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDIL 120
LVTQAA+LISTSN+GGGQASLS PTYTGLIRLLST ASGSPL AKTLL L ISGILKDIL
Sbjct: 402 LVTQAASLISTSNAGGGQASLSPPTYTGLIRLLSTFASGSPLGAKTLLLLEISGILKDIL 461
Query: 121 SGSGVSANSAVPPALSRPAEQIFEIVNLANELLPPLPQGTISLPSSSNMFVKGPVVRKSP 180
SGSGVSANS+VPPALSRPAEQIFEIVNLANELLPPLPQGTISLP+SSN+FVKGPVV+KSP
Sbjct: 462 SGSGVSANSSVPPALSRPAEQIFEIVNLANELLPPLPQGTISLPASSNVFVKGPVVKKSP 521
Query: 181 ASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLS 240
+SSSGKQDD NGN EVSAREKLL DQPELLQQFGMDLLPVL+QIYGSSVNSPVRHKCLS
Sbjct: 522 SSSSGKQDDLNGNVPEVSAREKLLKDQPELLQQFGMDLLPVLLQIYGSSVNSPVRHKCLS 581
Query: 241 VIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEKLPGTFSKM 300
VIGKLMYFSSAEMIQSLLS+TNISSFLAGVLAWKDPHVL+P+LQIAEILMEKLPGTFSKM
Sbjct: 582 VIGKLMYFSSAEMIQSLLSITNISSFLAGVLAWKDPHVLVPALQIAEILMEKLPGTFSKM 641
Query: 301 FVREGVVHAVDQLILAGNTNTVPSQASSADKDNDSIPGS-SRSRRYRRRSGNANPECNSS 359
FVREGVVHA+DQL+LAGN +T P+QA S +KDND + G+ SRSRRY+RRSGN+N E +
Sbjct: 642 FVREGVVHAIDQLVLAGNPSTTPTQAPSTEKDNDYVSGTSSRSRRYKRRSGNSNAEGSLL 701
Query: 360 EESKNPVSVNVGSPPSSVEIPTVNSNLRSAVSASAKAFKEKYFPSDPGAAEVGVTDHLLH 419
EES++P+ NVGSPPSSVEIPTVNS+LR AVS AK+FK+KYFPSDPGA+EVGVTD LLH
Sbjct: 702 EESRSPIPTNVGSPPSSVEIPTVNSSLRMAVSTCAKSFKDKYFPSDPGASEVGVTDDLLH 761
Query: 420 IKNLCMKLNAGVDDQRTKAKGKSKASGSRLADISATKEEYLIGVISEMLAELSTGDGVST 479
+KNLCMKLN GVDDQ+TKAKGKSKAS SR D S KEEYLIGVIS+MLAEL GDGVST
Sbjct: 762 LKNLCMKLNVGVDDQKTKAKGKSKASESRGIDGSINKEEYLIGVISDMLAELRKGDGVST 821
Query: 480 FEFIGSGVVAALLNYFSCGY--KERMSEANMLKLRQQALKRFKSFIAVALPNSLDAGDVA 537
FEFIGSGVVAALLNYFSCGY KER+SEAN+ KLRQQAL+RFK F+A++LP S +AG A
Sbjct: 822 FEFIGSGVVAALLNYFSCGYFSKERISEANLSKLRQQALRRFKLFVALSLPYSTNAGSAA 881
Query: 538 PMTVLVQKLQNALSSLERFPVVLSHSARSSTGSARLSSGLSALSQPFKLRLCRAQGDKSL 597
PM VLVQKLQNALSSLERFPVVLSHS+RSS GSARLSSGLSALSQPFKLRLCRAQG+KSL
Sbjct: 882 PMAVLVQKLQNALSSLERFPVVLSHSSRSSGGSARLSSGLSALSQPFKLRLCRAQGEKSL 941
Query: 598 RDYSSNVVLIDPLASLAAVEEFLWPRVQRNESGQKPSASVGNSESGTAPTGAGASSPSTS 657
RDYSSNVVLIDPLASLAAVEEFLWPRVQR ESGQKPSASVGNSESGT P GAGA SPS S
Sbjct: 942 RDYSSNVVLIDPLASLAAVEEFLWPRVQRGESGQKPSASVGNSESGTTPAGAGALSPSAS 1001
Query: 658 TPASSALRHSSRSRLSVNIGDGMKKEPSQEKGTSSSKGKGKAVLKSAQEEVRGPQTRNAA 717
TP+++ RHSSRSR SVNI D +KEP QEK TSSSKGKGKAV K AQEE +GPQTRN A
Sbjct: 1002 TPSTTR-RHSSRSRSSVNI-DAARKEPLQEKSTSSSKGKGKAVFKPAQEEAKGPQTRNVA 1059
Query: 718 RRRAALDKDAQMKQANGDSSSEDEELDISPVEIDDALVIEDDDISDDEDDDHEDVLKDDS 777
RRRAALDKDAQMK NGDSSSEDEELDISPVEIDDALVIEDDDISDDEDDDHED+L+DD
Sbjct: 1060 RRRAALDKDAQMKSVNGDSSSEDEELDISPVEIDDALVIEDDDISDDEDDDHEDMLRDDP 1119
Query: 778 LPLCLSDKVHDVKLGDSAEDSTTVPSASDSQNNPASGSSSRGATGRGSDSADFRGGNSYG 837
LP+C+ +KVHDVKLGD+ EDS+ P+ SDSQ NPASGSSSR AT RGS+S DFRGG+SYG
Sbjct: 1120 LPVCMPEKVHDVKLGDAPEDSSGAPATSDSQTNPASGSSSRAATVRGSESTDFRGGSSYG 1179
Query: 838 SRGAMSFAAAAMAGLGSANGRGVRGGRDRHGRPLFGSSNEPPKLIFTVGGKQLNRHLTIY 897
SRGAMSFAAAAMAGL +ANGRG+RGGRDR GRPL G S++PPKLIFT GGKQLNRHLTIY
Sbjct: 1180 SRGAMSFAAAAMAGLATANGRGIRGGRDRQGRPLLGGSSDPPKLIFTAGGKQLNRHLTIY 1239
Query: 898 QAIQRQLVLDEDEDERFGGSDFISSDGSRLWNDIYTITYQRADSQADRMSAGVSSSATPS 957
QAIQRQLVLDED+D+R+ GSDFISSDGSRLW+DIYTITYQRAD Q DR+S G SSS T
Sbjct: 1240 QAIQRQLVLDEDDDDRYAGSDFISSDGSRLWSDIYTITYQRADGQPDRVSVGGSSSTT-L 1298
Query: 958 KSSKSGSASNSNSDSA-SRMSLLDSILQGELPCDLEKSNPTYTILALLRVLEGLNQLAPR 1016
KS+K+GS SNSD +MSLLDSILQGELPCDLEKSNPTY ILALLRVL+GLNQLAPR
Sbjct: 1299 KSTKTGS---SNSDGQLHQMSLLDSILQGELPCDLEKSNPTYNILALLRVLDGLNQLAPR 1355
Query: 1017 LRAQTVCDSYAEGKISSLDELSGTGVRVPYEEFINSKLTPKLARQIQDALALCSGSLPSW 1076
LRAQ D++AEG+IS+LD+LS T RVP EEF+NSKLTPKLARQIQDALALCSGSLPSW
Sbjct: 1356 LRAQLFSDNFAEGQISNLDDLSATSSRVPAEEFVNSKLTPKLARQIQDALALCSGSLPSW 1415
Query: 1077 CYQLTKACPFLFPFETRRQYFYSTAFGLSRALYRLQQQQGADGHGSVNEREIRVGRLERQ 1136
CYQLTKACPFLFPFETRRQYFYSTAFGLSRALYRLQQQQGADGHGS NERE+RVGRL+RQ
Sbjct: 1416 CYQLTKACPFLFPFETRRQYFYSTAFGLSRALYRLQQQQGADGHGSANEREVRVGRLQRQ 1475
Query: 1137 KVRVSRNRILDSAAKVMEMYSSQKAVLEVEYFGEVGTGLGPTLEFYTLLSRDLQRVGLAM 1196
KVRVSRNRILDSAAKVMEMYSSQKAVLEVEYFGEVGTGLGPTLEFYTLLS DLQ+V L M
Sbjct: 1476 KVRVSRNRILDSAAKVMEMYSSQKAVLEVEYFGEVGTGLGPTLEFYTLLSHDLQKVVLGM 1535
Query: 1197 WRSNSSSENPSMEIDGDEGKSGKTSNIS----GDLVHAPLGLFPRPWPPSADASEGGQFS 1252
WRSNSSS+ PSMEID D K+GK +N S D+V APLGLFPRPWPPSADASEG QF
Sbjct: 1536 WRSNSSSDKPSMEIDEDGNKNGKVNNCSDAMGADVVQAPLGLFPRPWPPSADASEGSQFY 1595
Query: 1253 KVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELH 1312
K +EYFRL+GRVMAKALQDGRLLDLP STAFYKLVL ELDL+DI+ FDAEFGK+LQELH
Sbjct: 1596 KAVEYFRLVGRVMAKALQDGRLLDLPLSTAFYKLVLNQELDLYDILSFDAEFGKVLQELH 1655
Query: 1313 VIVCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLPGYPDYILKPGDENVDINNLE 1372
+VCRK+ LES +DN + + DLRFRG IEDLCLDFTLPGYPDYILKPGDE VD NNL+
Sbjct: 1656 ALVCRKRFLESSGTDNLDAISDLRFRGTLIEDLCLDFTLPGYPDYILKPGDETVDRNNLD 1715
Query: 1373 EYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALA 1432
EYISLVVDATVK+GIMRQMEAFRAGFNQVFDI+SLQIF+P ELD+LLCGRRELWEP L
Sbjct: 1716 EYISLVVDATVKSGIMRQMEAFRAGFNQVFDISSLQIFSPQELDYLLCGRRELWEPETLV 1775
Query: 1433 EHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVR 1492
+HIKFDHGYTAKSPAI+NLLEIMGEFTP+QQRAFCQFVTGAPRLPPGGLAVLNPKLTIVR
Sbjct: 1776 DHIKFDHGYTAKSPAIINLLEIMGEFTPEQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVR 1835
Query: 1493 KHSSTAPN-TASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGS 1551
KHSS+A N A+NGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKL+YAI+EGQGS
Sbjct: 1836 KHSSSAGNAAATNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLLYAINEGQGS 1895
Query: 1552 FDLS 1555
FDLS
Sbjct: 1896 FDLS 1899
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225428013|ref|XP_002278408.1| PREDICTED: E3 ubiquitin-protein ligase UPL3-like isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|225428015|ref|XP_002278452.1| PREDICTED: E3 ubiquitin-protein ligase UPL3-like isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|356507840|ref|XP_003522671.1| PREDICTED: E3 ubiquitin-protein ligase UPL3-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|356544882|ref|XP_003540876.1| PREDICTED: E3 ubiquitin-protein ligase UPL3-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|356538640|ref|XP_003537809.1| PREDICTED: E3 ubiquitin-protein ligase UPL3-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|356516547|ref|XP_003526955.1| PREDICTED: E3 ubiquitin-protein ligase UPL3-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|449458610|ref|XP_004147040.1| PREDICTED: E3 ubiquitin-protein ligase UPL3-like [Cucumis sativus] gi|449489652|ref|XP_004158376.1| PREDICTED: E3 ubiquitin-protein ligase UPL3-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|357473823|ref|XP_003607196.1| E3 ubiquitin-protein ligase UPL3 [Medicago truncatula] gi|355508251|gb|AES89393.1| E3 ubiquitin-protein ligase UPL3 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|297801930|ref|XP_002868849.1| hypothetical protein ARALYDRAFT_912310 [Arabidopsis lyrata subsp. lyrata] gi|297314685|gb|EFH45108.1| hypothetical protein ARALYDRAFT_912310 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1555 | ||||||
| TAIR|locus:2121224 | 1888 | KAK "AT4G38600" [Arabidopsis t | 0.990 | 0.815 | 0.648 | 0.0 | |
| UNIPROTKB|Q0E4T3 | 718 | Os02g0101700 "Os02g0101700 pro | 0.434 | 0.940 | 0.702 | 4.2e-253 | |
| TAIR|locus:2151306 | 1502 | UPL4 "AT5G02880" [Arabidopsis | 0.204 | 0.211 | 0.552 | 6.3e-178 | |
| DICTYBASE|DDB_G0287221 | 1898 | DDB_G0287221 "armadillo repeat | 0.200 | 0.164 | 0.420 | 4.7e-162 | |
| UNIPROTKB|A8I5Z4 | 508 | CHLREDRAFT_113116 "Predicted p | 0.318 | 0.974 | 0.525 | 2.9e-135 | |
| ZFIN|ZDB-GENE-041111-262 | 2095 | trip12 "thyroid hormone recept | 0.281 | 0.208 | 0.435 | 3.1e-132 | |
| UNIPROTKB|Q7S5Y8 | 1933 | NCU09866 "Putative uncharacter | 0.306 | 0.246 | 0.413 | 1.7e-129 | |
| UNIPROTKB|Q14669 | 1992 | TRIP12 "E3 ubiquitin-protein l | 0.281 | 0.219 | 0.430 | 7.2e-129 | |
| UNIPROTKB|J9NRQ4 | 2011 | TRIP12 "Uncharacterized protei | 0.281 | 0.217 | 0.430 | 1.1e-128 | |
| UNIPROTKB|E1B7Q7 | 1992 | TRIP12 "E3 ubiquitin-protein l | 0.281 | 0.219 | 0.430 | 6.2e-128 |
| TAIR|locus:2121224 KAK "AT4G38600" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4963 (1752.1 bits), Expect = 0., P = 0.
Identities = 1009/1557 (64%), Positives = 1127/1557 (72%)
Query: 1 MCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHG 60
MCKKLPSDA+D+VMEAVPLLTNLLQYHD+KVLE+AS+CLTRIAEAFA P+KLDELCNHG
Sbjct: 347 MCKKLPSDASDYVMEAVPLLTNLLQYHDSKVLEYASICLTRIAEAFAPYPEKLDELCNHG 406
Query: 61 LVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDIL 120
LVTQAA+LISTSNSGGGQASLS TYTGLIRLLSTCASGSPL +TLL LGIS ILKDIL
Sbjct: 407 LVTQAASLISTSNSGGGQASLSVSTYTGLIRLLSTCASGSPLGFRTLLLLGISSILKDIL 466
Query: 121 SGSGVSANSAVPPALSRPAEQIFEIVNLANELLPPLPQGTISLPSSSNMFVKGPVVRKSP 180
GSGVSAN++V PALSRPA+QI+EIVNLANELLPPLP+G ISLP+S+N VKG +KS
Sbjct: 467 LGSGVSANASVSPALSRPADQIYEIVNLANELLPPLPEGVISLPTSTNALVKGSCQKKSS 526
Query: 181 ASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLS 240
S+SGKQ+D ++S REKLL DQPELLQQFG+DLLPVL+QIYGSSVN +RHKCLS
Sbjct: 527 PSTSGKQEDI----LKISPREKLLGDQPELLQQFGLDLLPVLVQIYGSSVNGTIRHKCLS 582
Query: 241 VIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEKLPGTFSKM 300
VIGKLMYFSS+EMIQSL+ TNISSFLAGVLAWKDP VL+P+LQ+AEILMEKLP TFSK+
Sbjct: 583 VIGKLMYFSSSEMIQSLIGDTNISSFLAGVLAWKDPQVLVPALQVAEILMEKLPETFSKV 642
Query: 301 FVREGVVHAVDQLILAGNTNTVPSQASSADKDNDSIPGXXXXXXXXXXXGNANPECNSSE 360
FVREGVVHAVDQL+L G PS AS DKDND +PG NAN + N SE
Sbjct: 643 FVREGVVHAVDQLVLVGK----PSHASPTDKDNDCVPGSARSRRYRRRSSNANSDGNQSE 698
Query: 361 ESKXXXXXXXXXXXXXXEIPTVNSNLRSAVSASAKAFKEKYFPSDPGAAEVGVTDHLLHI 420
E K + PT + LR VS+ AKAFK+KYFPSD G +VGVTD LLH+
Sbjct: 699 EPKNPASLTIGANHNSLDTPTASFMLRETVSSCAKAFKDKYFPSDGGDVDVGVTDDLLHL 758
Query: 421 KNLCMKLNAGVDDQRTXXXXXXXXXXXRLADISATKEEYLIGVISEMLAELSTGDGVSTF 480
KNLC KL AG+DD + L D SA+KEEYLIGVISE+L E+S GDGVSTF
Sbjct: 759 KNLCTKLTAGIDDHKVKGKGKSKASGPFLGDFSASKEEYLIGVISEILGEISKGDGVSTF 818
Query: 481 EFIGSGVVAALLNYFSCGY--KERMSEANMLKLRQQALKRFKSFIAVALPNSLDAGDVAP 538
EFIGSGVVAALLNYFSCGY KE++SE N+ KLRQ+ L+RFK+F+ VALP + G V P
Sbjct: 819 EFIGSGVVAALLNYFSCGYFSKEKISELNLPKLRQEGLRRFKAFLEVALPFDGNEGKVPP 878
Query: 539 MTVLVQKLQNALSSLERFPVVLSHXXXXXXXXXXXXXXXXXXXQPFKLRLCRAQGDKSLR 598
MTVL+QKLQNALSSLERFPVVLSH P KLRLCRA G+K+LR
Sbjct: 879 MTVLIQKLQNALSSLERFPVVLSHPSRSLSGSARLSSGLSALAHPLKLRLCRASGEKTLR 938
Query: 599 DYSSNVVLIDPLASLAAVEEFLWPRVQRNESGQKPSASVGNSEXXXXXXXXXXXXXXXXX 658
DYSSN+VLIDPLASLAAVEEFLWPRVQR+ES KP+A +GN+E
Sbjct: 939 DYSSNIVLIDPLASLAAVEEFLWPRVQRSESALKPAAPIGNTEPGTLPSGAGVSSPSSST 998
Query: 659 XXXXXXXXXXXXXXXVNIGDGMKKEPSQEXXXXXXXXXXXAVLKSAQEEVRGPQTXXXXX 718
+NIGD KK+P E V+K AQ + +GPQT
Sbjct: 999 PASTTRRHSSRSRSAINIGDTSKKDPVHEKGTSSSKGKGKGVMKPAQAD-KGPQTRSNAQ 1057
Query: 719 XXXXLDKDAQMKQANGXXXXXXXXXXISPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 778
LDKD QMK A+G ISP
Sbjct: 1058 KRAVLDKDTQMKPASGDSSSEDEELEISPVDIDDALVIEEDDISDDEDDDNEDVLDDSL- 1116
Query: 779 PLCLSDKVHDVKLGDSAEDSTTVPSASDSQNNPXXXXXXXXXXXXXXXXXDFRGGNSYXX 838
P+C DKVHDVKL DS +D + S Q NP D GNSY
Sbjct: 1117 PMCTPDKVHDVKLADSVDDDGL--ATSGRQMNPASGGTSGAAAARASDSIDTGIGNSYGS 1174
Query: 839 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLFGSSNEPPKLIFTVGGKQLNRHLTIYQ 898
L SS+EP KLIFT GKQL+RHLTIYQ
Sbjct: 1175 RGALSFAAAAMAGLGAASGRGIRGSRDLHGRTLNRSSDEPSKLIFTAAGKQLSRHLTIYQ 1234
Query: 899 AIQRQLVLDEDEDERXXXXXXXXXXXXRLWNDIYTITYQRADSQADRMXXXXXXXXXXXX 958
A+QRQL+LDED+D+R R +NDIYTI YQR DSQ +R+
Sbjct: 1235 AVQRQLMLDEDDDDRFGGSDLVSSDGSR-FNDIYTIMYQRPDSQVNRLSVGGASSTTPSK 1293
Query: 959 XXXXXXXXXXXXXXXXXXXLLDSILQGELPCDLEKSNPTYTILALLRVLEGLNQLAPRLR 1018
LLDSILQGELPCDLEKSN TY +LALLRVLEGLNQL PRLR
Sbjct: 1294 STKSATTNSSVESQSHRASLLDSILQGELPCDLEKSNSTYNVLALLRVLEGLNQLCPRLR 1353
Query: 1019 AQTVCDSYAEGKISSLDELSGTGVRVPYEEFINSKLTPKLARQIQDALALCSGSLPSWCY 1078
AQT+ D +AEGKI+SLD+LS T +VP +EF+NSKLTPKLARQIQDALALCSGSLPSWCY
Sbjct: 1354 AQTLSDRFAEGKITSLDDLSTTAAKVPLDEFVNSKLTPKLARQIQDALALCSGSLPSWCY 1413
Query: 1079 QLTKACPFLFPFETRRQYFYSTAFGLSRALYRLQQQQGADGHGSVNEREIRVGRLERQKV 1138
QLT+ACPFLFPF+TRRQYFYSTAFGLSRAL RLQQQQGADG GS NERE+R+GRL+RQKV
Sbjct: 1414 QLTRACPFLFPFQTRRQYFYSTAFGLSRALNRLQQQQGADGSGSTNEREMRIGRLQRQKV 1473
Query: 1139 RVSRNRILDSAAKVMEMYSSQKAVLEVEYFGEVGTGLGPTLEFYTLLSRDLQRVGLAMWR 1198
RVSRNRILDSAAKVMEMYSSQKAVLEVEYFGEVGTGLGPTLEFYTLLS DLQ+ L MWR
Sbjct: 1474 RVSRNRILDSAAKVMEMYSSQKAVLEVEYFGEVGTGLGPTLEFYTLLSHDLQKASLGMWR 1533
Query: 1199 SNSSSENPSMEIDGDEGKSGKTSNISGDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYF 1258
S SS + SM+I DE + GK S + D+V APLGLFPRPWP +AD SEGGQF KVIEYF
Sbjct: 1534 S-SSGDKVSMQIGRDEIEDGKPSAANRDIVLAPLGLFPRPWPSTADISEGGQFHKVIEYF 1592
Query: 1259 RLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIVCRK 1318
RLLGRVMAKALQDGRLLD+P STAFYKL+LG ELDLHDI+ FDAE GK LQEL V+V RK
Sbjct: 1593 RLLGRVMAKALQDGRLLDVPLSTAFYKLILGQELDLHDIVLFDAELGKTLQELRVVVARK 1652
Query: 1319 QHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLPGYPDYILKPGDENVDINNLEEYISLV 1378
+LE + DN + DL RG IEDL L+FTLPGYP+YIL+ GDE VDI NLEEYISLV
Sbjct: 1653 HYLEGVGGDNSSTISDLCLRGCRIEDLSLEFTLPGYPEYILRSGDEIVDITNLEEYISLV 1712
Query: 1379 VDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFD 1438
VDATVK G+ RQ+EAFR+GFNQVFDITSLQIFTP ELD+LLCGRRELWE LAEHIKFD
Sbjct: 1713 VDATVKRGVTRQIEAFRSGFNQVFDITSLQIFTPSELDYLLCGRRELWEVETLAEHIKFD 1772
Query: 1439 HGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTA 1498
HGY AKSPAI+NLLEIMGE T DQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSST+
Sbjct: 1773 HGYNAKSPAIINLLEIMGELTADQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTS 1832
Query: 1499 PNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 1555
+ A+NG G SE+ADDDLPSVMTCANYLKLPPYSTKEIMYKKL+YAI+EGQGSFDLS
Sbjct: 1833 -SAAANGAGASETADDDLPSVMTCANYLKLPPYSTKEIMYKKLLYAINEGQGSFDLS 1888
|
|
| UNIPROTKB|Q0E4T3 Os02g0101700 "Os02g0101700 protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2151306 UPL4 "AT5G02880" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| DICTYBASE|DDB_G0287221 DDB_G0287221 "armadillo repeat-containing protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|A8I5Z4 CHLREDRAFT_113116 "Predicted protein" [Chlamydomonas reinhardtii (taxid:3055)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-041111-262 trip12 "thyroid hormone receptor interactor 12" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q7S5Y8 NCU09866 "Putative uncharacterized protein" [Neurospora crassa OR74A (taxid:367110)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q14669 TRIP12 "E3 ubiquitin-protein ligase TRIP12" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|J9NRQ4 TRIP12 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E1B7Q7 TRIP12 "E3 ubiquitin-protein ligase TRIP12" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q6WWW4 | UPL3_ARATH | 6, ., 3, ., 2, ., - | 0.7572 | 0.9903 | 0.8156 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 6.3.2 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1555 | |||
| cd00078 | 352 | cd00078, HECTc, HECT domain; C-terminal catalytic | 1e-119 | |
| smart00119 | 328 | smart00119, HECTc, Domain Homologous to E6-AP Carb | 3e-92 | |
| pfam00632 | 298 | pfam00632, HECT, HECT-domain (ubiquitin-transferas | 1e-91 | |
| COG5021 | 872 | COG5021, HUL4, Ubiquitin-protein ligase [Posttrans | 7e-78 | |
| pfam03153 | 332 | pfam03153, TFIIA, Transcription factor IIA, alpha/ | 2e-05 | |
| PRK05901 | 509 | PRK05901, PRK05901, RNA polymerase sigma factor; P | 1e-04 |
| >gnl|CDD|238033 cd00078, HECTc, HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3) | Back alignment and domain information |
|---|
Score = 377 bits (970), Expect = e-119
Identities = 155/420 (36%), Positives = 212/420 (50%), Gaps = 75/420 (17%)
Query: 1136 QKVRVSRNRILDSAAKVMEMYSSQ--KAVLEVEYFGEVGTG-LGPTLEFYTLLSRDLQRV 1192
K+ V R+RIL+ A + + SS K VLEVE+ GE G G T EF+TL+S++L
Sbjct: 1 LKITVRRDRILEDALRQLSKVSSSDLKKVLEVEFVGEEGIDAGGVTREFFTLVSKELFNP 60
Query: 1193 GLAMWRSNSSSENPSMEIDGDEGKSGKTSNISGDLVHAPLGLFPRPWPPSADASEGGQFS 1252
++R L+P P + +
Sbjct: 61 SYGLFRYTPDDSG---------------------------LLYPNPSSFADE-------- 85
Query: 1253 KVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELH 1312
++ FR LGR++ KAL +GRLLDLPFS AFYK +LG L L D+ D E K L+EL
Sbjct: 86 DHLKLFRFLGRLLGKALYEGRLLDLPFSRAFYKKLLGKPLSLEDLEELDPELYKSLKEL- 144
Query: 1313 VIVCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLPGYPDYILKPG--DENVDINN 1370
D E+ ++L F + LD + G LKPG D V N
Sbjct: 145 ---------LDNDGD--EDDLELTF------TIELDSSFGGAVTVELKPGGRDIPVTNEN 187
Query: 1371 LEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAA 1430
EEY+ L VD + GI Q+EAFR GF++V L +FTP EL+ L+CG + +
Sbjct: 188 KEEYVDLYVDYRLNKGIEEQVEAFRDGFSEVIPEELLSLFTPEELELLICGSED-IDLED 246
Query: 1431 LAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTI 1490
L ++ ++ GY++ SP I E++ FT ++++ F QFVTG+ RLP GG A LNPK TI
Sbjct: 247 LKKNTEYKGGYSSDSPTIQWFWEVLESFTNEERKKFLQFVTGSSRLPVGGFADLNPKFTI 306
Query: 1491 VRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQG 1550
R S DD LP+ TC N LKLPPYS+KEI+ +KL+YAI+EG G
Sbjct: 307 RRVGSP----------------DDRLPTAHTCFNLLKLPPYSSKEILREKLLYAINEGAG 350
|
It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ubiquitin molecules to the end of growing ubiquitin chains. Length = 352 |
| >gnl|CDD|214523 smart00119, HECTc, Domain Homologous to E6-AP Carboxyl Terminus with | Back alignment and domain information |
|---|
| >gnl|CDD|216035 pfam00632, HECT, HECT-domain (ubiquitin-transferase) | Back alignment and domain information |
|---|
| >gnl|CDD|227354 COG5021, HUL4, Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit | Back alignment and domain information |
|---|
| >gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1555 | |||
| KOG0170 | 621 | consensus E3 ubiquitin protein ligase [Posttransla | 100.0 | |
| KOG0168 | 1051 | consensus Putative ubiquitin fusion degradation pr | 100.0 | |
| COG5021 | 872 | HUL4 Ubiquitin-protein ligase [Posttranslational m | 100.0 | |
| KOG0941 | 850 | consensus E3 ubiquitin protein ligase [Posttransla | 100.0 | |
| cd00078 | 352 | HECTc HECT domain; C-terminal catalytic domain of | 100.0 | |
| KOG0942 | 1001 | consensus E3 ubiquitin protein ligase [Posttransla | 100.0 | |
| smart00119 | 336 | HECTc Domain Homologous to E6-AP Carboxyl Terminus | 100.0 | |
| KOG4427 | 1096 | consensus E3 ubiquitin protein ligase [Posttransla | 100.0 | |
| KOG0939 | 720 | consensus E3 ubiquitin-protein ligase/Putative ups | 100.0 | |
| PF00632 | 317 | HECT: HECT-domain (ubiquitin-transferase); InterPr | 100.0 | |
| KOG0940 | 358 | consensus Ubiquitin protein ligase RSP5/NEDD4 [Pos | 100.0 | |
| KOG0943 | 3015 | consensus Predicted ubiquitin-protein ligase/hyper | 100.0 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 99.69 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 99.59 | |
| KOG0168 | 1051 | consensus Putative ubiquitin fusion degradation pr | 98.73 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 97.95 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 97.67 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 97.2 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 96.78 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 96.7 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 96.42 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 96.26 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 95.39 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 95.37 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 95.25 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 94.73 | |
| KOG1058 | 948 | consensus Vesicle coat complex COPI, beta subunit | 94.6 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 94.06 | |
| PF12460 | 415 | MMS19_C: RNAPII transcription regulator C-terminal | 91.09 | |
| PF03224 | 312 | V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 | 90.52 | |
| PF00514 | 41 | Arm: Armadillo/beta-catenin-like repeat; InterPro: | 90.27 | |
| PF03224 | 312 | V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 | 90.09 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 89.5 | |
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 89.08 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 87.49 | |
| KOG2160 | 342 | consensus Armadillo/beta-catenin-like repeat-conta | 87.11 | |
| KOG2160 | 342 | consensus Armadillo/beta-catenin-like repeat-conta | 86.65 | |
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 86.59 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 85.29 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 84.85 | |
| PF05536 | 543 | Neurochondrin: Neurochondrin | 84.35 | |
| smart00185 | 41 | ARM Armadillo/beta-catenin-like repeats. Approx. 4 | 80.61 |
| >KOG0170 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-143 Score=1232.02 Aligned_cols=618 Identities=55% Similarity=0.867 Sum_probs=536.4
Q ss_pred eEEEEECCccCCCCCcHHHHHHHhhhcccccccccCCCCccCCCCCCCcccceEEEEEecCCccccccCCCCCCCCCCCC
Q 000409 880 KLIFTVGGKQLNRHLTIYQAIQRQLVLDEDEDERFGGSDFISSDGSRLWNDIYTITYQRADSQADRMSAGVSSSATPSKS 959 (1555)
Q Consensus 880 ~l~f~~~~~~l~~~~Ti~~av~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~i~y~~~~~~~~~~~~~~~~~~~~~~~ 959 (1555)
+|.|++.|+.+++++|+||||+|+....++++ . +.+. .... |+.+|+|+|++-+......++++.+...+..+
T Consensus 1 ~l~f~~~g~~l~~~~t~yqav~~~~~~~e~e~----~-s~s~-~~~~-~~~t~~~~~~~~d~~~n~~~vg~~s~~~~~~~ 73 (621)
T KOG0170|consen 1 RLQFYIGGHLLPRNLTVYQAVRQFSIQAEDED----E-SNPL-GRGG-WNKTYTIWYQREDSESNKDCVGGKRGRAQTAP 73 (621)
T ss_pred CceEEeccccccccchHHHHHHHHhhhccccc----c-CCcc-ccCc-chhhhhhhhhccchhhhhcccccccccccCCc
Confidence 47999999999999999999999988766431 1 1121 2233 99999999997554433333333221111222
Q ss_pred CCCCCCCCCCC-ccccccchhhhhccCCCCCCccCCCChHHHHHHHHHHHHhhhhchhhhhcccccccccCccccccccc
Q 000409 960 SKSGSASNSNS-DSASRMSLLDSILQGELPCDLEKSNPTYTILALLRVLEGLNQLAPRLRAQTVCDSYAEGKISSLDELS 1038 (1555)
Q Consensus 960 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~lL~~l~~ln~~~~~~~~~~~~~~~~~~~~~~l~~~~ 1038 (1555)
.+.... +.+. +.+|..+.+...+ ...+..++.+++++|+|+ ....+|. .++++.
T Consensus 74 ~~~~~~-n~~~~~~~h~~~~~~~~~-----~~~e~~~~~~~~i~l~rv--~~~~~~~-----------------~l~d~~ 128 (621)
T KOG0170|consen 74 TKTSPT-NKKHDELSHDPSVSNPLL-----VPLENINPSLDVILLLRV--AIEGYWY-----------------YLDDLA 128 (621)
T ss_pred ccccCc-CCchhhccCChhhccccc-----cchhhcCchHHHHHHHhh--cccchhh-----------------hhhhhh
Confidence 222111 1111 2233222111111 133444578888888888 2222232 234444
Q ss_pred CCCCCCCchhhhcccchHHHHHHHHHHHHHhcCCCchHHHHhhccCCcccChhhHHHHHHhhhhchHHHHHHHHHhhcCC
Q 000409 1039 GTGVRVPYEEFINSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALYRLQQQQGAD 1118 (1555)
Q Consensus 1039 ~~~~~~~~~~F~~~klt~Kl~rql~~~l~~~s~~lp~w~~~l~~~~PFLfpfetR~~~f~~tsfg~~R~l~~lq~~~~~~ 1118 (1555)
.....+|.++|||+|||+|++||++||+++|+|.+|.||.+|++.|||||||+||++|||+|+||++|++++||+.++.+
T Consensus 129 ~~~~~vp~sefiNsKLt~Kl~rql~d~l~v~sg~lp~w~~~L~~~cpfLfpf~Tr~~~f~~taFg~~R~~~~~k~~s~~~ 208 (621)
T KOG0170|consen 129 MCKEIVPTSEFINSKLTAKLARQLQDPLVVASGALPDWSLFLTRRCPFLFPFDTRMLYFYSTAFGLSRAIQLLKNKSKGS 208 (621)
T ss_pred hhhcCCChHHHHHHHhhHHHHHHhcCcceeecCCCChhhhhhhhcCCeeccHHHHHHHHHHHHhhhhhHHHHHhhcccCC
Confidence 45588999999999999999999999999999999999999999999999999999999999999999999999988766
Q ss_pred CCCCCcchhhhcccccccccccCchhHHHHHHHHHhhhcCCCceEEEEEcCccccCCcchHHHHHHHHHHHhccCCCCcc
Q 000409 1119 GHGSVNEREIRVGRLERQKVRVSRNRILDSAAKVMEMYSSQKAVLEVEYFGEVGTGLGPTLEFYTLLSRDLQRVGLAMWR 1198 (1555)
Q Consensus 1119 ~~~~~~~~~~~~grl~r~kv~V~R~~IlesA~~~l~~~~~~k~~LeV~F~gE~G~g~GptrEFyslvs~El~~~~l~lf~ 1198 (1555)
.+++.++...++||++|+|++|+|++||++|+++|++|++++.+|||||++|+|+|+|||+|||++|++||++++++|||
T Consensus 209 ~~~s~~e~~~~~grL~RkK~risR~~Il~sa~kvm~~ygss~~vLEIEY~~EvGTGLGPTLEFYtlVSk~fq~~sLgmWR 288 (621)
T KOG0170|consen 209 KDGSNDEALQQLGRLTRKKLRISRKTILASALKVMEKYGSSKAVLEIEYEEEVGTGLGPTLEFYTLVSKEFQRASLGMWR 288 (621)
T ss_pred CCCCchHHhHhhcccchhhhhhhHHHHHHHHHHHHHHhcCCcceEEEEeccccccCCCcceeeHHHHHHHHhhccccccc
Confidence 66666777788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCccccCCCCCCCCCCCCCCCceecCCCCCCCCCCCCCCCccCCCchhHHHHHHhcccchhhheecCCccccc
Q 000409 1199 SNSSSENPSMEIDGDEGKSGKTSNISGDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLP 1278 (1555)
Q Consensus 1199 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~yv~~~~GLfP~P~~~~~~~s~~~~~~~~l~~F~~LG~~iakAl~d~~~ldl~ 1278 (1555)
++.- .+.+ +++ ..+..||..+.||||.||++....+++ .+++++|++||+||||||+|+|++|+|
T Consensus 289 ~~s~----s~~~-------~k~-~~~t~~v~~~sgLFp~P~~~ts~~se~---~kvi~~F~~LG~~vAkal~D~Rildlp 353 (621)
T KOG0170|consen 289 CNSV----SYRS-------GKP-QENTKDVYITSGLFPRPWPPTSNSSEN---EKVIELFRLLGTFVAKALQDGRILDLP 353 (621)
T ss_pred cCce----eecc-------CCC-CCCcchhhhccccCCCCCCCCCCchhH---HHHHHHHHHHHHHHHHHHhcCceEeee
Confidence 9753 1221 122 456789999999999999997655543 689999999999999999999999999
Q ss_pred CCHHHHHHHhCCCCCccchhccCHHHHHHHHHHHHHHhhhhhhhccccCcccchhcccccCCcccccccccccCCCCcee
Q 000409 1279 FSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIVCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLPGYPDYI 1358 (1555)
Q Consensus 1279 fs~~f~K~Llg~~ltl~DL~~vDp~l~~sL~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iedL~L~Ftlpg~~~iE 1358 (1555)
|+++|||+++|++++..|+..|||+++++|.+|+..+.+|+.++...|+...+..+|++.||.||||+|+||+||+++||
T Consensus 354 ls~~Fykl~l~q~Lt~~dv~~vd~~l~~sL~~Le~vv~~k~~~~~~~~d~~~a~~dltl~g~~iEdL~LdFTLPG~p~ie 433 (621)
T KOG0170|consen 354 LSKAFYKLILGQELTSHDVTTVDPELAKSLLELELVVPRKKKLEKYIGDVANADDDLTLNGCSIEDLSLDFTLPGFPDIE 433 (621)
T ss_pred ccHHHHHHHhcCCcccccceecCHHHHHHHHHHHHHhhhhhhhhhhcccccccccceeecCcchhhceeeEecCCCCCee
Confidence 99999999999999999999999999999999999999999998888888889999999999999999999999999999
Q ss_pred cCCCCC--cCCcccHHHHHHHHHHHHhhhcHHHHHHHHHhhcccccccccccCCCHHHHHhhhcCCCCcCCHHHHhhhcE
Q 000409 1359 LKPGDE--NVDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIK 1436 (1555)
Q Consensus 1359 L~pgG~--~VT~~N~~eYV~lv~~~~L~~~v~~Q~~aFr~GF~~V~p~~~L~~Fsp~EL~~licG~~~~w~~e~L~~~~~ 1436 (1555)
|+|||. +||..|++|||+.|++|++++||.+|++|||.||++|||++.|++|+|+||+.|+||.+++|+.++|++|++
T Consensus 434 L~p~g~~~~V~~~NleEYi~~VId~tv~kGVqkQleAFr~GF~~VF~~~~Lqif~p~EL~~llcg~~e~ws~~TL~~~i~ 513 (621)
T KOG0170|consen 434 LIPGGANKPVTISNLEEYIHGVIDATVGKGVQKQLEAFRSGFSSVFPYEHLQIFTPEELVTLLCGVEEDWSMATLMEHIK 513 (621)
T ss_pred eccCCCCCccccccHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhheeecCHHHHHHHhccchhhccHHHHHHhcc
Confidence 999998 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCChHHHHHHHHHhcCCHHHHHhhcccccCCCCCCCCCCccCCCceEEEecCCCCCCCCCCCCCCCCCCCCCCC
Q 000409 1437 FDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDL 1516 (1555)
Q Consensus 1437 ~~~Gyt~~s~~I~~Fwevl~efs~eerr~FLqFvTGs~rLP~gGf~~L~p~~tIv~k~~~~~~~~~~~~~g~~~~~d~~L 1516 (1555)
+|||||++||.|+.|++||++|+.+|||.||||||||||||+|||++|+||||||||+.+. ++++|++|
T Consensus 514 ~DHGYT~~Sp~i~~li~ils~f~~~qQR~FLQFvTGSprLPiGGfasLNPklTIVrKh~e~-----------~~t~Dd~L 582 (621)
T KOG0170|consen 514 ADHGYTMDSPIIHDLISILSAFDKEQQRLFLQFVTGSPRLPIGGFASLNPKLTIVRKHAED-----------SETPDDYL 582 (621)
T ss_pred cccCccCCCcHHHHHHHHhhhhchHHHHHHHHHhcCCCCCCCCcccccCCCeEEEeccCCC-----------CCCccccc
Confidence 9999999999999999999999999999999999999999999999999999999999876 58899999
Q ss_pred cEEecccCcccCCCCCCHHHHHHHHHHHHHhCCccccCC
Q 000409 1517 PSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 1555 (1555)
Q Consensus 1517 Psa~TC~n~LkLP~YsS~evLreKL~~AI~eg~g~F~LS 1555 (1555)
||||||+||||||+|||+|+||+||.+||+||||+||||
T Consensus 583 PSVMTCaNYLKLP~YSSkEiM~~kL~~Ai~EGqgSFhLS 621 (621)
T KOG0170|consen 583 PSVMTCANYLKLPPYSSKEIMRSKLLYAIEEGQGSFHLS 621 (621)
T ss_pred chHHHHHhhhcCCCCchHHHHHHHHHHHHHccccccccC
Confidence 999999999999999999999999999999999999998
|
|
| >KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG5021 HUL4 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd00078 HECTc HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3) | Back alignment and domain information |
|---|
| >KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >smart00119 HECTc Domain Homologous to E6-AP Carboxyl Terminus with | Back alignment and domain information |
|---|
| >KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0939 consensus E3 ubiquitin-protein ligase/Putative upstream regulatory element binding protein [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
| >PF00632 HECT: HECT-domain (ubiquitin-transferase); InterPro: IPR000569 The name HECT comes from 'Homologous to the E6-AP Carboxyl Terminus' [] | Back alignment and domain information |
|---|
| >KOG0940 consensus Ubiquitin protein ligase RSP5/NEDD4 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
| >KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
| >PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins | Back alignment and domain information |
|---|
| >PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
| >PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless | Back alignment and domain information |
|---|
| >PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF05536 Neurochondrin: Neurochondrin | Back alignment and domain information |
|---|
| >smart00185 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1555 | ||||
| 1c4z_A | 358 | Structure Of E6ap: Insights Into Ubiquitination Pat | 1e-26 | ||
| 3tug_A | 398 | Crystal Structure Of The Hect Domain Of Itch E3 Ubi | 2e-26 | ||
| 1nd7_A | 374 | Conformational Flexibility Underlies Ubiquitin Liga | 2e-25 | ||
| 2xbb_A | 386 | Nedd4 Hect:ub Complex Length = 386 | 7e-25 | ||
| 3jvz_C | 385 | E2~ubiquitin-Hect Length = 385 | 2e-23 | ||
| 3jw0_C | 385 | E2~ubiquitin-Hect Length = 385 | 3e-23 | ||
| 3h1d_A | 405 | Structure Of The Huwe1 Hect Domain Length = 405 | 5e-22 | ||
| 3g1n_A | 388 | Catalytic Domain Of The Human E3 Ubiquitin-Protein | 2e-21 | ||
| 2oni_A | 392 | Catalytic Domain Of The Human Nedd4-Like E3 Ligase | 1e-20 | ||
| 1zvd_A | 380 | Regulation Of Smurf2 Ubiquitin Ligase Activity By A | 1e-18 | ||
| 3olm_A | 429 | Structure And Function Of A Ubiquitin Binding Site | 2e-16 |
| >pdb|1C4Z|A Chain A, Structure Of E6ap: Insights Into Ubiquitination Pathway Length = 358 | Back alignment and structure |
|
| >pdb|3TUG|A Chain A, Crystal Structure Of The Hect Domain Of Itch E3 Ubiquitin Ligase Length = 398 | Back alignment and structure |
| >pdb|1ND7|A Chain A, Conformational Flexibility Underlies Ubiquitin Ligation Mediated By The Wwp1 Hect Domain E3 Ligase Length = 374 | Back alignment and structure |
| >pdb|2XBB|A Chain A, Nedd4 Hect:ub Complex Length = 386 | Back alignment and structure |
| >pdb|3JVZ|C Chain C, E2~ubiquitin-Hect Length = 385 | Back alignment and structure |
| >pdb|3JW0|C Chain C, E2~ubiquitin-Hect Length = 385 | Back alignment and structure |
| >pdb|3H1D|A Chain A, Structure Of The Huwe1 Hect Domain Length = 405 | Back alignment and structure |
| >pdb|3G1N|A Chain A, Catalytic Domain Of The Human E3 Ubiquitin-Protein Ligase Huwe1 Length = 388 | Back alignment and structure |
| >pdb|2ONI|A Chain A, Catalytic Domain Of The Human Nedd4-Like E3 Ligase Length = 392 | Back alignment and structure |
| >pdb|1ZVD|A Chain A, Regulation Of Smurf2 Ubiquitin Ligase Activity By Anchoring The E2 To The Hect Domain Length = 380 | Back alignment and structure |
| >pdb|3OLM|A Chain A, Structure And Function Of A Ubiquitin Binding Site Within The Catalytic Domain Of A Hect Ubiquitin Ligase Length = 429 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE, alternative splicing, chromosomal rearrangement, cytoplasm, differentiation; 1.89A {Homo sapiens} PDB: 3g1n_A Length = 405 | Back alignment and structure |
|---|
Score = 256 bits (656), Expect = 2e-75
Identities = 114/506 (22%), Positives = 184/506 (36%), Gaps = 130/506 (25%)
Query: 1072 SLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALYRLQQQQGADGHGSVNEREIRVG 1131
S ++ P + F+ +R+YF L++ +
Sbjct: 8 HHHSSGLEVLFQGPHM-DFDVKRKYFRQ----------ELERLDEGLRKEDM-------- 48
Query: 1132 RLERQKVRVSRNRIL-DSAAKVMEMYSSQ-KAVLEVEYFGEVGT--GLGPTLEFYTLLSR 1187
V V R+ + DS ++ + K L + + GE G G G E+Y ++SR
Sbjct: 49 -----AVHVRRDHVFEDSYRELHRKSPEEMKNRLYIVFEGEEGQDAG-GLLREWYMIISR 102
Query: 1188 DLQRVGLAMWRSNSSSE-----NPSMEIDGDEGKSGKTSNISGDLVHAPLGLFPRPWPPS 1242
++ A++R++ NPS + +
Sbjct: 103 EMFNPMYALFRTSPGDRVTYTINPSSHANPNH---------------------------- 134
Query: 1243 ADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDA 1302
+ YF+ +GR++AKA+ D RLL+ F+ +FYK +LG + D+ D
Sbjct: 135 ------------LSYFKFVGRIVAKAVYDNRLLECYFTRSFYKHILGKSVRYTDMESEDY 182
Query: 1303 EFGKILQELHVIVCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLP----GYPDYI 1358
F + L + ++ + L F+ G +
Sbjct: 183 HFYQ-------------GLVYLLENDVSTL-----------GYDLTFSTEVQEFGVAEVR 218
Query: 1359 -LKPGDEN--VDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHEL 1415
LKP N V N +EY+ LV + I +Q+ AF GF ++ + IFT EL
Sbjct: 219 DLKPNGANILVTEENKKEYVHLVCQMRMTGAIRKQLAAFLEGFYEIIPKRLISIFTEQEL 278
Query: 1416 DHLLCGRREL-WEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAP 1474
+ L+ G + + L + ++ H Y + S I + F + F QFVTG
Sbjct: 279 ELLISGLPTIDID--DLKSNTEY-HKYQSNSIQIQWFWRALRSFDQADRAKFLQFVTGTS 335
Query: 1475 RLPPGGLAVLNP-----KLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLP 1529
++P G A L K I R ST D LPS TC N L LP
Sbjct: 336 KVPLQGFAALEGMNGIQKFQIHRDDRST----------------DRLPSAHTCFNQLDLP 379
Query: 1530 PYSTKEIMYKKLVYAISEGQGSFDLS 1555
Y + E + L+ AI E F L+
Sbjct: 380 AYESFEKLRHMLLLAIQEASEGFGLA 405
|
| >2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta protein (A + B), E3 ligase, HECT domain, UBL- conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB: 3jvz_C 3jw0_C 2xbf_A 2xbb_A Length = 392 | Back alignment and structure |
|---|
| >1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic mechanism,X-RAY ligase; 2.10A {Homo sapiens} Length = 380 | Back alignment and structure |
|---|
| >1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A Length = 358 | Back alignment and structure |
|---|
| >1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1; 2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A Length = 374 | Back alignment and structure |
|---|
| >3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae} Length = 429 | Back alignment and structure |
|---|
| >3pt3_A E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed alpha-beta fold, ubiquitin ligase; 1.97A {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Length = 265 | Back alignment and structure |
|---|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
| >1rm1_C Transcription initiation factor IIA large chain; yeast TFIIA, TBP protein, ATA-box DNA, transcription/DNA complex; 2.50A {Saccharomyces cerevisiae} Length = 286 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1555 | ||||
| d1c4za_ | 350 | d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) | 6e-79 | |
| d1nd7a_ | 374 | d.148.1.1 (A:) WW domain-containing protein 1, WWP | 3e-77 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 0.004 |
| >d1c4za_ d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) {Human (Homo sapiens) [TaxId: 9606]} Length = 350 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Hect, E3 ligase catalytic domain superfamily: Hect, E3 ligase catalytic domain family: Hect, E3 ligase catalytic domain domain: Ubiquitin-protein ligase E3a (E6ap) species: Human (Homo sapiens) [TaxId: 9606]
Score = 262 bits (671), Expect = 6e-79
Identities = 104/425 (24%), Positives = 178/425 (41%), Gaps = 96/425 (22%)
Query: 1137 KVRVSRNRILDSAAKVMEMYSSQ-----KAVLEVEYFGEVGTGL-GPTLEFYTLLSRDLQ 1190
+++V R+ I+D A +EM + + K L VE+ GE G G + EF+ L+ ++
Sbjct: 5 RLKVRRDHIIDDALVRLEMIAMENPADLKKQLYVEFEGEQGVDEGGVSKEFFQLVVEEIF 64
Query: 1191 RVGLAMWRSNSSSENPSMEIDGDEGKSGKTSNISGDLVHAPLGLFPRPWPPSADASEGGQ 1250
+ M+ + S+ + + + + E
Sbjct: 65 NPDIGMFTYDEST---------------------------------KLFWFNPSSFE--- 88
Query: 1251 FSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQE 1310
F L+G V+ A+ + +LD+ F Y+ ++G + D+ + L++
Sbjct: 89 ---TEGQFTLIGIVLGLAIYNNCILDVHFPMVVYRKLMGKKGTFRDLGDSHPVLYQSLKD 145
Query: 1311 LHVIVCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLP-----GYPDYI-LKPGDE 1364
L L + G +D+ + F + G P LK +
Sbjct: 146 L-----------------------LEYEGNVEDDMMITFQISQTDLFGNPMMYDLKENGD 182
Query: 1365 NVDINN--LEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITS-LQIFTPHELDHLLCG 1421
+ I N +E+++L D + + +Q +AFR GF+ V + + +F P E++ L+CG
Sbjct: 183 KIPITNENRKEFVNLYSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIELLICG 242
Query: 1422 RRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGL 1481
R + AL E ++D GYT S I EI+ FT +Q+R F QF TG R P GGL
Sbjct: 243 SRN-LDFQALEETTEYDGGYTRDSVLIREFWEIVHSFTDEQKRLFLQFTTGTDRAPVGGL 301
Query: 1482 AVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKL 1541
L K+ I + + LP+ TC N L LP YS+KE + ++L
Sbjct: 302 GKL--KMIIAKNGPD----------------TERLPTSHTCFNVLLLPEYSSKEKLKERL 343
Query: 1542 VYAIS 1546
+ AI+
Sbjct: 344 LKAIT 348
|
| >d1nd7a_ d.148.1.1 (A:) WW domain-containing protein 1, WWP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 374 | Back information, alignment and structure |
|---|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1555 | |||
| d1nd7a_ | 374 | WW domain-containing protein 1, WWP1 {Human (Homo | 100.0 | |
| d1c4za_ | 350 | Ubiquitin-protein ligase E3a (E6ap) {Human (Homo s | 100.0 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 99.64 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 99.61 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 98.88 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 98.83 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 98.68 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 98.42 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 98.21 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 97.53 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 97.32 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 97.22 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 96.59 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 96.33 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 93.56 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 92.72 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 91.76 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 90.74 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 89.31 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 88.27 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 86.94 | |
| d1wa5c_ | 959 | Exportin Cse1p {Baker's yeast (Saccharomyces cerev | 82.76 |
| >d1nd7a_ d.148.1.1 (A:) WW domain-containing protein 1, WWP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Hect, E3 ligase catalytic domain superfamily: Hect, E3 ligase catalytic domain family: Hect, E3 ligase catalytic domain domain: WW domain-containing protein 1, WWP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=610.38 Aligned_cols=338 Identities=30% Similarity=0.452 Sum_probs=299.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHC--CCCCEEEEEECCCCCCCC-CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 442023570169999999996501--797417999827632377-50589999999998413789732389999998534
Q 000409 1134 ERQKVRVSRNRILDSAAKVMEMYS--SQKAVLEVEYFGEVGTGL-GPTLEFYTLLSRDLQRVGLAMWRSNSSSENPSMEI 1210 (1555)
Q Consensus 1134 ~r~kv~V~R~~il~sA~~vl~~~~--~~~~~LeVeF~gE~G~g~-GptrEFy~lvs~El~~~~l~lf~~~~~~~~~~~~~ 1210 (1555)
.+.+++|+|++|++|+++.+.... ..+++|+|+|.||+|+|. ||+||||+++++|+++++++||+.++.+
T Consensus 22 ~~~~i~V~R~~l~~d~~~~l~~~~~~~l~~~l~V~F~gE~g~D~GG~~rEff~~l~~el~~p~~~lf~~~~~~------- 94 (374)
T d1nd7a_ 22 SHVKINVSRQTLFEDSFQQIMALKPYDLRRRLYVIFRGEEGLDYGGLAREWFFLLSHEVLNPMYCLFEYAGKN------- 94 (374)
T ss_dssp SEEEEEECTTTHHHHHHHHHHTSCGGGGGSEEEEEETTTCCCCCTHHHHHHHHHHHHHHTCGGGSSEEESSSS-------
T ss_pred CCEEEEECCCCHHHHHHHHHHHCCHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEECCCC-------
T ss_conf 8559997656589999999971698984787699978987447871199999999999808866875664798-------
Q ss_pred CCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHEECCCCCCCCCCHHHHHHHHCC
Q ss_conf 68888889877888881206898878999999877668870237789976012101100039802566799999998178
Q 000409 1211 DGDEGKSGKTSNISGDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGH 1290 (1555)
Q Consensus 1211 d~~~~~~~~~~~~~~~yv~~~~GLfP~P~~~~~~~~~~~~~~~~l~~F~fLG~liakAl~d~r~ldl~fs~~f~K~llg~ 1290 (1555)
.+ .++|+|.... ..+++++|+|+|++||+||+++.+++++|+++|||+|+|+
T Consensus 95 ---------------~~-----~~~~~p~~~~--------~~~~~~~f~~lG~lig~al~~~~~~~~~f~~~f~k~Llg~ 146 (374)
T d1nd7a_ 95 ---------------NY-----CLQINPASTI--------NPDHLSYFCFIGRFIAMALFHGKFIDTGFSLPFYKRMLSK 146 (374)
T ss_dssp ---------------SC-----CEEECGGGGG--------STTHHHHHHHHHHHHHHHHHTTCCCCCCCCHHHHHHHTTC
T ss_pred ---------------CC-----CCCCCCCCCC--------CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCC
T ss_conf ---------------85-----5355874436--------8058999988579999999849613877568999885499
Q ss_pred CCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCCCCCCCCCCCCCCC-----CCCCEECCCCCC-
Q ss_conf 89935310007999999999999985443210013676110111333588534453201149-----997210389997-
Q 000409 1291 ELDLHDIIPFDAEFGKILQELHVIVCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLP-----GYPDYILKPGDE- 1364 (1555)
Q Consensus 1291 ~ltl~DL~~vDp~l~~sL~~L~~~~~~k~~i~~~~~~~~~~~~~l~~~~~~iedL~L~Ftlp-----g~~~~eL~pgG~- 1364 (1555)
+++++||..+||+++++|+++.+. + .+..+++++|++. ....+||+|||+
T Consensus 147 ~~t~~DL~~iD~~~~~sl~~l~~~------------~------------~e~~~l~l~f~~~~~~~~~~~~~eL~~~G~~ 202 (374)
T d1nd7a_ 147 KLTIKDLESIDTEFYNSLIWIRDN------------N------------IEECGLEMYFSVDMEILGKVTSHDLKLGGSN 202 (374)
T ss_dssp CCCHHHHHTTCHHHHHHHHHHHSS------------C------------SCSSCCCCBSEECCCSSTTCCCEESSTTGGG
T ss_pred CCCHHHHHHHCHHHHHHHHHHHHC------------C------------CCCCCCCEEEEEEEECCCCCCEEECCCCCCC
T ss_conf 898999988578988749999854------------6------------4104660357877512787422544789976
Q ss_pred -CCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHCEECCCCCC
Q ss_conf -6774618899999999876511799999998302213343223588998898631389876898887432184487799
Q 000409 1365 -NVDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTA 1443 (1555)
Q Consensus 1365 -~VT~~N~~eYV~~v~~~~L~~gv~~q~~Afr~GF~~V~p~~~L~~Fsp~EL~~licG~~~~w~~e~L~~~~~~~~Gyt~ 1443 (1555)
.||.+|+++||+++++|+++++++.|++|||+||++|+|...|++|+|+||+.++||..+ +|+++|++++.|. ||+.
T Consensus 203 ~~VT~~N~~~yv~~~~~~~l~~~~~~~~~afr~Gf~~vip~~~l~~f~~~eL~~licG~~~-id~~~l~~~~~y~-gy~~ 280 (374)
T d1nd7a_ 203 ILVTEENKDEYIGLMTEWRFSRGVQEQTKAFLDGFNEVVPLQWLQYFDEKELEVMLCGMQE-VDLADWQRNTVYR-HYTR 280 (374)
T ss_dssp CBCCTTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHSCGGGGTTCCHHHHHHHHHCCCC-CCHHHHHHTEEEE-SCCT
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHCCCCC-CCHHHHHHHEEEC-CCCC
T ss_conf 5206878999999999999721178999999986987679898764889999986279987-7889996432613-6789
Q ss_pred CCHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCCC-----CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 9868999999981299999986430003888789999766888-----26897238999988888999999999999967
Q 000409 1444 KSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNP-----KLTIVRKHSSTAPNTASNGTGPSESADDDLPS 1518 (1555)
Q Consensus 1444 ~s~~i~~fwevl~~~s~eerr~FLqFvTGs~rLP~gGf~~L~p-----~ltVv~k~~~~~~~~~~~~~g~~~~~d~~LPs 1518 (1555)
+|+.|+|||+||.+|+.+||++||+|+||++|+|+|||++|.+ +++|.+.. +|++||+
T Consensus 281 ~s~~i~~fw~vl~~~t~ee~~~fL~FvTGs~rlP~~G~~~l~~~~~~~~~~i~~~~-----------------~~~~LP~ 343 (374)
T d1nd7a_ 281 NSKQIIWFWQFVKETDNEVRMRLLQFVTGTCRLPLGGFAELMGSNGPQKFCIEKVG-----------------KDTWLPR 343 (374)
T ss_dssp TSHHHHHHHHHHHHSCHHHHHHHHHHHHSCSCCCTTCGGGCEETTEECCEEEECCS-----------------CTTSCCE
T ss_pred CCHHHHHHHHHHHHCCHHHHHHHHEEECCCCCCCCCCHHHHCCCCCCCCEEECCCC-----------------CCCCCCC
T ss_conf 98899999998770699999874466368998898645654356788751314689-----------------9999970
Q ss_pred EECCCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 7455671037899999999999999998098
Q 000409 1519 VMTCANYLKLPPYSTKEIMYKKLVYAISEGQ 1549 (1555)
Q Consensus 1519 a~TC~n~LkLP~YsS~evlkeKL~~AI~eg~ 1549 (1555)
||||||+|+||+|+|+|+|++||++||+|++
T Consensus 344 A~TCfn~L~LP~Yss~e~l~ekL~~AI~~~e 374 (374)
T d1nd7a_ 344 SHTCFNRLDLPPYKSYEQLKEKLLFAIEETE 374 (374)
T ss_dssp EEGGGTEEECCCCSSHHHHHHHHHHHHHSCC
T ss_pred HHHHHCEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 5440267669898899999999999997149
|
| >d1c4za_ d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|