Citrus Sinensis ID: 000428

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------1370------1380------1390------1400------1410------1420------1430------1440------1450------1460------1470------1480------1490------1500------1510------1520

MAAANAPISMKEVLTLPSVGINPQFITFTNVTMESDKYICVRETAPQNSVVIIDMNQPMQPLRRPITADSALMNPNSRILALKAQLPGTTQDHLQIFNIELKAKIKSHQMSEQVVFWKWISPKMLGVVTQTSVYHWSIEGDSEPVKMFDRTANLTNNQIINYKCDPTEKWLVLIGIAPGSAERPQLVKGNMQLFSVDQQRSQALEAHAASFAQFKVPGNENPSVLISFATKSFNAGQVTSKLHVIELGAQPGKPSFTKKQADLFFPPDFADDFPVAMQISHKYGLIYVITKLGLLFVYDLETAAAVYRNRISPDPIFLTSEASSLGGFYAINRRGQVLLATVNEATIVPFVSGQLNNLELAVNLAKRGNLPGAENLVVQRFQELFAQTKYKEAAELAAESPQGLLRTPDTVAKFQSVPVQAGQTPPLLQYFGTLLTRGKLNAFESLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLVKTVDNDLALKIYIKARATPKVVAAFAERREFDKILIYSKQVGYTPDYLFLLQTILRTDPQGAVNFALMMSQMEGGCPVDYNTITDLFLQRNLIREATAFLLDVLKPNLPEHGFLQTKVLEINLVTFPNVADAILANGMFSHYDRPRIAQLCEKAGLYMRALQHYTELPDIKRVIVNTHAIEPQSLVEFFGTLSREWALECMKDLLLVNLRGNLQIIVQTAKEYCEQLGVEACIKLFEQFKSYEGLYFFLGSYLSSSEDPDIHFKYIEAAAKTGQIKEVERVTRESNFYDPEKTKNFLMEAKLPDARPLINVCDRFGFVPDLTHYLYTNNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPEDFIKGLILSVRSLLPVEPLVEECEKRNRLRLLTQFLEHLVSEGSQDVHVHNALGKIIIDSNNNPEHFLTTNPYYDSRVVGKYCEKRDPTLAVVAYRRGQCDDELINVTNKNSLFKLQARYVVERMDADLWEKVLTPENEYRRQLIDQVVSTALPESKSPEQVSAAVKAFMTADLPHELIELLEKIVLQNSAFSGNFNLQNLLILTAIKADPSRVMDYVNRLDNFDGPAVGEVAVEAQLYEEAFAIFKKFNLNVQAVNVLLDNIRSIERAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIESFIRADDATQFLDVIRAAEDADVYHDLVRYLLMVRQKVKEPKVDSELIYAYAKIDRLGDIEEFILMPNVANLQNVGDRLYDDTLYEAAKIIYAFISNWAKLAVTLVKLKQFQGAVDAARKANSAKTWKEVCFACVDAEEFRLAQICGLNIIVQVDDLEEVSEYYQNRGYFNELISLMESGLGLERAHMGIFTELGVLYARYRYEKLMEHIKLFSTRLNIPKLIRACDEQQHWKELTYLYIQYDEFDNAATTIMNHSPEAWDHMQFKDVAVKVANVELYYKAVHFYLQEHPDLINDLLNVLALRVDHTRVVDIMRKAGHLLLVKPYMVAVQSNNVSAVNEALNEIYVEEEDYERLRESIDMHDNFDQIGLARRLRNMSFWK

ccccccccEEEEEcccccccccccccccccEEEEccEEEEEEEcccccEEEEEEccccccccccccccccccccccccEEEEEEcccccccccEEEEEHHHHcccccccccccEEEEEEccccEEEEEEccEEEEEEcccccccHHHHHccccccccEEEEEEEcccccEEEEEEccccccccccccccEEEEEEcccccccHHcHHHccccEEccccccccccEEEEEEEcccccccccEEEEEEccccccccccccccccccccccccccccEEEEEcccccEEEEEEcccEEEEEEcccccEEEEcccccccEEEEEcccccccEEEEcccccEEEEEEcccccHHHHHHccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHcHHHHHHHHHcccccccccHHHHHHHHcccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHHHHHcccHHHHHHHHHHccHHHHHHHHHHccccccHHHHHHHHHHcccHHHHHHHHHHHHccccccccHHHHHHHHHHHccHHHHHHHHHHHHcccccccccccccHHHccccccHHHHHHHHHccccccccHHHHHHHHHHHcHHHHHHHHccccccccEEEEccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHcccccHHHHHHHHcccccccHHHHHHHHHHHHHHccHHHHHHHHcccccccHHHHHHHHHHccccccccEEEEccccccHHHHHHHHHHcccccEEEEEEEEcccccccHHHHHHHcccccHHHHHHHHHHHccccccHHHHHHHHHHcHHHHHHHHHHHHHHcccccccccccccEEEEEcccccccccccccccccccccccccccccccEEEEEcccccHHHHHHHHcccHHHHHHHHHHHHHccHHHHHHHcccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHHcccHHHHHHHHHHccccHHHHHHHHHHHccHHHHHHHHHHHccHHHHHHHHHHHHHcccHHHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHccHHHHHHHHcccccccHHHHHHHHHccccHHHHHHHHHHHHcHHHHHHHHHHHHcHHHHHHHHHHHccHHHHHHHHHHHccHHHHHHHHHHccccccccccHHHHHHHHHHcccHHHHHHHHHccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccHHHHHHHHHHHHcHHHHHHHHHHcccHHHHHHHHHHccccccccHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHcccccHHHHHHHHHHHccccccHHHHHHHHHHcHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccHHHHHHHHHcccccc

ccccccccEEEEEEEHHHccccHccccccEEEEEcccEEEEEEEccccEEEEEEcccccccccccccccHEEccccccEEEEEEEcccccccEEEEEEccHHHHHHcccccccEEEEEEEcccEEEEEEccEEEEEEcccccccEEEEcccccccccEEEEEEEcccccEEEEEEEEcccccccccEEEEEEEEEccccccccEHHHHHHHEEEEccccccccEEEEEEEEEccccccccEEEEEEEcccccccccccEEEEEcccccccccccEEEEEcccccEEEEEEccEEEEEEEcccHHHEEEEccccccEEEEEccccccEEEEEEcccEEEEEEEcHHccHHHHHHccccHHHHHHHHHHcccccHHHHHHHHHHHHHHcccHHHHHHHHHHccccccccHHHHHHHHccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHccccccHHHHHHHccccHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHHHcccccHHHHHHHHHHHccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHccHHHHHHHHHccccccccHHHHHHHHHHHcHHHHHHHHcccHHHHHHHHHccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHccccHHHHHHHHHHHccccccHHHHHHHHHHHHcccccEEHEEEcccccccHHHHHHHHHHccccccccEEEEEccccHHHHHHHHHHHcccccEEEEEEEEcccccccEEEEEEEcccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHEEEcccccHHHHHHccccccccEHcHHHHcccccEEEEEEEccccHHHHHHHHcccHHHHHHHHHHHHHccHHHHHHHHccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccHHHHHHHHHHHccccHHHHHHHHHHccHHHHHHHHHHHHccHHHHHHHHHHHHHcHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccHHHHHHHHHccEEEEcHHHHHHHHHHHHHcccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcccHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHcccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccccHHHHHHHHHHccccc

maaanapismkevltlpsvginpqfitftnvtmesdkyicvretapqnsvviidmnqpmqplrrpitadsalmnpnSRILALkaqlpgttqdHLQIFNIELKAKIKSHQMSEQVVFWKwispkmlgvVTQTSVyhwsiegdsepvkmfdrtanltnnqiinykcdpteKWLVLIGiapgsaerpqlvkgnmqlFSVDQQRSQALEAHAASFaqfkvpgnenpsVLISFATKSFNAGQVTSKLHVIElgaqpgkpsftkkqadlffppdfaddfpvamQISHKYGLIYVITKLGLLFVYDLETAAAVYRnrispdpifltseasslggfyaiNRRGQVLLATVNEATIVPFVSGQLNNLELAVNLAkrgnlpgaenLVVQRFQELFAQTKYKEAAELAaespqgllrtpdtvakfqsvpvqagqtppllQYFGTLLtrgklnafESLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLVKTVDNDLALKIYIKARATPKVVAAFAERREFDKILIYskqvgytpdYLFLLQTILRTDPQGAVNFALMMSQmeggcpvdyntitDLFLQRNLIREATAFLLDvlkpnlpehgflqtKVLEInlvtfpnvADAILANgmfshydrpRIAQLCEKAGLYMRALQHytelpdikRVIVnthaiepqslVEFFGTLSREWALECMKDLLLVNLRGNLQIIVQTAKEYCEQLGVEACIKLFEQFKSYEGLYFFLGsylsssedpdiHFKYIEAAAKTGQIKEVERVtresnfydpektknflmeaklpdarplinvcdrfgfvpdlthylYTNNMLRYIEGYVqkvnpgnaplvvgqllddecpEDFIKGLILSVRsllpveplveECEKRNRLRLLTQFLEHLVSEGSQDVHVHNALGKiiidsnnnpehflttnpyydsrvvgkycekrdptLAVVAYRRgqcddelinvtnknsLFKLQARYVVERMDADLWEKVLTPENEYRRQLIDQVVStalpeskspeQVSAAVKAFMTADLPHELIELLEKIVLqnsafsgnfnlQNLLILTAikadpsrvMDYVNrldnfdgpavgEVAVEAQLYEEAFAIFKKFNLNVQAVNVLLDNIRSIERAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIESFIRADDATQFLDVIRAAEDADVYHDLVRYLLMVRQKvkepkvdsELIYAYAKIdrlgdieefilmpnvanlqnvgdrlydDTLYEAAKIIYAFISNWAKLAVTLVKLKQFQGAVDAARKANSAKTWKEVCFACVDAEEFRLAQICGLNIIVQVDDLEEVSEYYQNRGYFNELISLMESGLGLERAHMGIFTELGVLYARYRYEKLMEHIKLFSTRLNIPKLIRACDEQQHWKELTYLYIQYDEFDNAATtimnhspeawdhmqFKDVAVKVANVELYYKAVHFYLQEHPDLINDLLNVLALRVDHTRVVDIMRKAGHLLLVKPYMVAVQSNNVSAVNEALNEIYVEEEDYERLRESIDMHDNFDQIGLARRLRNMSFWK

maaanapismkevLTLPSVGINPQFITFTNVTMESDKYICVRETAPQNSVVIIDMNQPMQPLRRPITADSALMNPNSRILALKAQLPGTTQDHLQIFNIELKAKIKSHQMSEQVVFWKWISPKMLGVVTQTSVYHWSIEGDSEPVKMFDRTANLTNNQIINYKCDPTEKWLVLIGIAPGSAERPQLVKGNMQLFSVDQQRSQALEAHAASFAQFKVPGNENPSVLISFATKSFNAGQVTSKLHVIELGAQPGKPSFTKKQADLFFPPDFADDFPVAMQISHKYGLIYVITKLGLLFVYDLETAAAVYRNRISPDPIFLTSEASSLGGFYAINRRGQVLLATVNEATIVPFVSGQLNNLELAVNLAKRGNLPGAENLVVQRFQELFAQTKYKEAAELAAESPQGLLRTPDTVAKFQSvpvqagqtpPLLQYFGTLLTRGKLNAFESLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLVKTVDNDLALKIYikaratpkVVAAFAERREFDKILIYSKQVGYTPDYLFLLQTILRTDPQGAVNFALMMSQMEGGCPVDYNTITDLFLQRNLIREATAFLLDVLKPNLPEHGFLQTKVLEINLVTFPNVADAILANGMFSHYDRPRIAQLCEKAGLYMRALQHYTELPDIKRVIVNTHAIEPQSLVEFFGTLSREWALECMKDLLLVNLRGNLQIIVQTAKEYCEQLGVEACIKLFEQFKSYEGLYFFLGSYLSSSEDPDIHFKYIEAAaktgqikevervtresnfydpektKNFLMEAKLPDARPLINVCDRFGFVPDLTHYLYTNNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPEDFIKGLILSVRSLLPVEPLVEECEKRNRLRLLTQFLEHLVSEGSQDVHVHNALGKIiidsnnnpeHFLTTNPYYDSRVVGKYCEKRDPTLAVVAYRRGQCddelinvtnknslfKLQARYVVERMDADLWekvltpeneyrRQLIDQVVstalpesksPEQVSAAVKAFMTADLPHELIELLEKIVLQNSAFSGNFNLQNLLILTAIKADPSRVMDYVNRLDNFDGPAVGEVAVEAQLYEEAFAIFKKFNLNVQAVNVLLDNIRSIERAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIESFIRADDATQFLDVIRAAEDADVYHDLVRYLLMVrqkvkepkvdseLIYAYAKIDRLGDIEEFILMPNVANLQNVGDRLYDDTLYEAAKIIYAFISNWAKLAVTLVKLKQFQGAVDAARKANSAKTWKEVCFACVDAEEFRLAQICGLNIIVQVDDLEEVSEYYQNRGYFNELISLMESGLGLERAHMGIFTELGVLYARYRYEKLMEHIKLFSTRLNIPKLIRACDEQQHWKELTYLYIQYDEFDNAATTIMNHSPEAWDHMQFKDVAVKVANVELYYKAVHFYLQEHPDLINDLLNVLALRVDHTRVVDIMRKAGHLLLVKPYMVAVQSNNVSAVNEALNEIYVEEEDYERLRESIDMHDNFDQIGLarrlrnmsfwk

MAAANAPISMKEVLTLPSVGINPQFITFTNVTMESDKYICVRETAPQNSVVIIDMNQPMQPLRRPITADSALMNPNSRILALKAQLPGTTQDHLQIFNIELKAKIKSHQMSEQVVFWKWISPKMLGVVTQTSVYHWSIEGDSEPVKMFDRTANLTNNQIINYKCDPTEKWLVLIGIAPGSAERPQLVKGNMQLFSVDQQRSQALEAHAASFAQFKVPGNENPSVLISFATKSFNAGQVTSKLHVIELGAQPGKPSFTKKQadlffppdfaddfpvaMQISHKYGLIYVITKLGLLFVYDLETAAAVYRNRISPDPIFLTSEASSLGGFYAINRRGQVLLATVNEATIVPFVSGQLNNLELAVNLAKRGNLPGAENLVVQRFQELFAQTKYKEAAELAAESPQGLLRTPDTVAKFQSVPVQAGQTPPLLQYFGTLLTRGKLNAFESLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLVKTVDNDLALKIYIKARATPKVVAAFAERREFDKILIYSKQVGYTPDYLFLLQTILRTDPQGAVNFALMMSQMEGGCPVDYNTITDLFLQRNLIREATAFLLDVLKPNLPEHGFLQTKVLEINLVTFPNVADAILANGMFSHYDRPRIAQLCEKAGLYMRALQHYTELPDIKRVIVNTHAIEPQSLVEFFGTLSREWALECMKDLLLVNLRGNLQIIVQTAKEYCEQLGVEACIKLFEQFKSYEglyfflgsylsssEDPDIHFKYIEAAAKTGQIKEVERVTRESNFYDPEKTKNFLMEAKLPDARPLINVCDRFGFVPDLTHYLYTNNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPEDFIKGLILSVRSllpveplveeCEKRNRLRLLTQFLEHLVSEGSQDVHVHNALGKIIIDSNNNPEHFLTTNPYYDSRVVGKYCEKRDPTLAVVAYRRGQCDDELINVTNKNSLFKLQARYVVERMDADLWEKVLTPENEYRRQLIDQVVSTALPESKSPEQVSAAVKAFMTADLPHELIELLEKIVLQNSAFSGNFNLQNLLILTAIKADPSRVMDYVNRLDNFDGPAVGEVAVEAQLYEEAFAIFKKFNLNVQAVNVLLDNIRSIERAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIESFIRADDATQFLDVIRAAEDADVYHDLVRYLLMVRQKVKEPKVDSELIYAYAKIDRLGDIEEFILMPNVANLQNVGDRLYDDTLYEAAKIIYAFISNWAKLAVTLVKLKQFQGAVDAARKANSAKTWKEVCFACVDAEEFRLAQICGLNIIVQVDDLEEVSEYYQNRGYFNELISLMESGLGLERAHMGIFTELGVLYARYRYEKLMEHIKLFSTRLNIPKLIRACDEQQHWKELTYLYIQYDEFDNAATTIMNHSPEAWDHMQFKDVAVKVANVELYYKAVHFYLQEHPDLINDLLNVLALRVDHTRVVDIMRKAGHLLLVKPYMvavqsnnvsavnEALNEIYVEEEDYERLRESIDMHDNFDQIGLARRLRNMSFWK

***********EVLTLPSVGINPQFITFTNVTMESDKYICVRETAPQNSVVIIDM**********************RILALKAQLPGTTQDHLQIFNIELKAKIKSHQMSEQVVFWKWISPKMLGVVTQTSVYHWSIEGDSEPVKMFDRTANLTNNQIINYKCDPTEKWLVLIGIAPG*******************************FAQFKV*****PSVLISFATKSFNAGQVTSKLHVIELGA******FTKKQADLFFPPDFADDFPVAMQISHKYGLIYVITKLGLLFVYDLETAAAVYRNRISPDPIFLTSEASSLGGFYAINRRGQVLLATVNEATIVPFVSGQLNNLELAVNLAKRGNLPGAENLVVQRFQELFAQTKYKEA****************TVAKFQSVPVQAGQTPPLLQYFGTLLTRGKLNAFESLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLVKTVDNDLALKIYIKARATPKVVAAFAERREFDKILIYSKQVGYTPDYLFLLQTILRTDPQGAVNFALMMSQMEGGCPVDYNTITDLFLQRNLIREATAFLLDVLKPNLPEHGFLQTKVLEINLVTFPNVADAILANGMFSHYDRPRIAQLCEKAGLYMRALQHYTELPDIKRVIVNTHAIEPQSLVEFFGTLSREWALECMKDLLLVNLRGNLQIIVQTAKEYCEQLGVEACIKLFEQFKSYEGLYFFLGSYLSSSEDPDIHFKYIEAAAKTGQIKEVERVTRESNFYD**KTKNFLMEAKLPDARPLINVCDRFGFVPDLTHYLYTNNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPEDFIKGLILSVRSLLPVEPLVEECEKRNRLRLLTQFLEHLVSEGSQDVHVHNALGKIIIDSNNNPEHFLTTNPYYDSRVVGKYCEKRDPTLAVVAYRRGQCDDELINVTNKNSLFKLQARYVVERMDADLWEKVLTPENEYRRQLIDQVVS*************AAVKAFMTADLPHELIELLEKIVLQNSAFSGNFNLQNLLILTAIKADPSRVMDYVNRLDNFDGPAVGEVAVEAQLYEEAFAIFKKFNLNVQAVNVLLDNIRSIERAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIESFIRADDATQFLDVIRAAEDADVYHDLVRYLLMVRQKVKEPKVDSELIYAYAKIDRLGDIEEFILMPNVANLQNVGDRLYDDTLYEAAKIIYAFISNWAKLAVTLVKLKQFQGAVDAARKANSAKTWKEVCFACVDAEEFRLAQICGLNIIVQVDDLEEVSEYYQNRGYFNELISLMESGLGLERAHMGIFTELGVLYARYRYEKLMEHIKLFSTRLNIPKLIRACDEQQHWKELTYLYIQYDEFDNAATTIMNHSPEAWDHMQFKDVAVKVANVELYYKAVHFYLQEHPDLINDLLNVLALRVDHTRVVDIMRKAGHLLLVKPYMVAVQSNNVSAVNEALNEIYVEEEDYERLRESIDMHDNFDQIGLARRL*******

****NAP*SMKEVLTLPSVGINPQFITFTNVTMESDKYICVRETAPQNSVVIIDMNQPMQPLRRPITADSALMNPNSRILALKAQLPGTTQDHLQIFNIELKAKIKSHQMSEQVVFWKWISPKMLGVVTQTSVYHWSIEGDSEPVKMFDRTANLTNNQIINYKCDPTEKWLVLIGIAPGSA****LVKGNMQLFSVDQQRSQALEAHAASFAQFKVPGNENPSVLISFATKSFNAGQVTSKLHVIELGAQPG**SFTKKQADLFFPPDFADDFPVAMQISHKYGLIYVITKLGLLFVYDLETAAAVYRNRISPDPIFLTSEASSLGGFYAINRRGQVLLATVNEATIVPFVSGQLNNLELAVNLAKRGNLPGAENLVVQRFQELFAQTKYKEAAELAAESPQGLLRTPDTVA*************PLLQYFGTLLTRGKLNAFESLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLVKTVDNDLALKIYIKARATPKVVAAFAERREFDKILIYSKQVGYTPDYLFLLQTILRTDPQGAVNFALMMSQMEGGCPVDYNTITDLFLQRNLIREATAFLLDVLKPNLPEHGFLQTKVLEINLVTFPNVADAILANGMFSHYDRPRIAQLCEKAGLYMRALQHYTELPDIKRVIVNTHAIEPQSLVEFFGTLSREWALECMKDLLLVNLRGNLQIIVQTAKEYCEQLGVEACIKLFEQFKSYEGLYFFLGSYLSSSEDPDIHFKYIEAAAKTGQIKEVERVTRESNFYDPEKTKNFLMEAKLPDARPLINVCDRFGFVPDLTHYLYTNNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPEDFIKGLILSVRSLLPVEPLVEECEKRNRLRLLTQFLEHLVSEGSQDVHVHNALGKIIIDSNNNPEHFLTTNPYYDSRVVGKYCEKRDPTLAVVAYRRGQCDDELINVTNKNSLFKLQARYVVERMDADLWEKVLTPENEYRRQLIDQVVSTALPESKSPEQVSAAVKAFMTADLPHELIELLEKIVLQNSAFSGNFNLQNLLILTAIKADPSRVMDYVNRLDNFDGPAVGEVAVEAQLYEEAFAIFKKFNLNVQAVNVLLDNIRSIERAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIESFIRADDATQFLDVIRAAEDADVYHDLVRYLLMVRQKVKEPKVDSELIYAYAKIDRLGDIEEFILMPNVANLQNVGDRLYDDTLYEAAKIIYAFISNWAKLAVTLVKLKQFQGAVDAARKANSAKTWKEVCFACVDAEEFRLAQICGLNIIVQVDDLEEVSEYYQNRGYFNELISLMESGLGLERAHMGIFTELGVLYARYRYEKLMEHIKLFSTRLNIPKLIRACDEQQHWKELTYLYIQYDEFDNAATTIMNHSPEAWDHMQFKDVAVKVANVELYYKAVHFYLQEHPDLINDLLNVLALRVDHTRVVDIMRKAGHLLLVKPYMVAVQSNNVSAVNEALNEIYVEEEDYERLRESIDMHDNFDQIGLARRLRNMS***

********SMKEVLTLPSVGINPQFITFTNVTMESDKYICVRETAPQNSVVIIDMNQPMQPLRRPITADSALMNPNSRILALKAQLPGTTQDHLQIFNIELKAKIKSHQMSEQVVFWKWISPKMLGVVTQTSVYHWSIEGDSEPVKMFDRTANLTNNQIINYKCDPTEKWLVLIGIAPGSAERPQLVKGNMQLFSVDQQRSQALEAHAASFAQFKVPGNENPSVLISFATKSFNAGQVTSKLHVIELGAQPGKPSFTKKQADLFFPPDFADDFPVAMQISHKYGLIYVITKLGLLFVYDLETAAAVYRNRISPDPIFLTSEASSLGGFYAINRRGQVLLATVNEATIVPFVSGQLNNLELAVNLAKRGNLPGAENLVVQRFQELFAQTKYKEAAELAAESPQGLLRTPDTVAKFQSVPVQAGQTPPLLQYFGTLLTRGKLNAFESLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLVKTVDNDLALKIYIKARATPKVVAAFAERREFDKILIYSKQVGYTPDYLFLLQTILRTDPQGAVNFALMMSQMEGGCPVDYNTITDLFLQRNLIREATAFLLDVLKPNLPEHGFLQTKVLEINLVTFPNVADAILANGMFSHYDRPRIAQLCEKAGLYMRALQHYTELPDIKRVIVNTHAIEPQSLVEFFGTLSREWALECMKDLLLVNLRGNLQIIVQTAKEYCEQLGVEACIKLFEQFKSYEGLYFFLGSYLSSSEDPDIHFKYIEAAAKTGQIKEVERVTRESNFYDPEKTKNFLMEAKLPDARPLINVCDRFGFVPDLTHYLYTNNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPEDFIKGLILSVRSLLPVEPLVEECEKRNRLRLLTQFLEHLVSEGSQDVHVHNALGKIIIDSNNNPEHFLTTNPYYDSRVVGKYCEKRDPTLAVVAYRRGQCDDELINVTNKNSLFKLQARYVVERMDADLWEKVLTPENEYRRQLIDQVVSTA***********AAVKAFMTADLPHELIELLEKIVLQNSAFSGNFNLQNLLILTAIKADPSRVMDYVNRLDNFDGPAVGEVAVEAQLYEEAFAIFKKFNLNVQAVNVLLDNIRSIERAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIESFIRADDATQFLDVIRAAEDADVYHDLVRYLLMVRQKVKEPKVDSELIYAYAKIDRLGDIEEFILMPNVANLQNVGDRLYDDTLYEAAKIIYAFISNWAKLAVTLVKLKQFQG***********KTWKEVCFACVDAEEFRLAQICGLNIIVQVDDLEEVSEYYQNRGYFNELISLMESGLGLERAHMGIFTELGVLYARYRYEKLMEHIKLFSTRLNIPKLIRACDEQQHWKELTYLYIQYDEFDNAATTIMNHSPEAWDHMQFKDVAVKVANVELYYKAVHFYLQEHPDLINDLLNVLALRVDHTRVVDIMRKAGHLLLVKPYMVAVQSNNVSAVNEALNEIYVEEEDYERLRESIDMHDNFDQIGLARRLRNMSFWK

****NAPISMKEVLTLPSVGINPQFITFTNVTMESDKYICVRETAPQNSVVIIDMNQPMQPLRRPITADSALMNPNSRILALKAQLPGTTQDHLQIFNIELKAKIKSHQMSEQVVFWKWISPKMLGVVTQTSVYHWSIEGDSEPVKMFDRTANLTNNQIINYKCDPTEKWLVLIGIAPGSAERPQLVKGNMQLFSVDQQRSQALEAHAASFAQFKVPGNENPSVLISFATKSFNAGQVTSKLHVIELGAQPGKPSFTKKQADLFFPPDFADDFPVAMQISHKYGLIYVITKLGLLFVYDLETAAAVYRNRISPDPIFLTSEASSLGGFYAINRRGQVLLATVNEATIVPFVSGQLNNLELAVNLAKRGNLPGAENLVVQRFQELFAQTKYKEAAELAAESPQGLLRTPDTVAKFQSVPVQAGQTPPLLQYFGTLLTRGKLNAFESLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLVKTVDNDLALKIYIKARATPKVVAAFAERREFDKILIYSKQVGYTPDYLFLLQTILRTDPQGAVNFALMMSQMEGGCPVDYNTITDLFLQRNLIREATAFLLDVLKPNLPEHGFLQTKVLEINLVTFPNVADAILANGMFSHYDRPRIAQLCEKAGLYMRALQHYTELPDIKRVIVNTHAIEPQSLVEFFGTLSREWALECMKDLLLVNLRGNLQIIVQTAKEYCEQLGVEACIKLFEQFKSYEGLYFFLGSYLSSSEDPDIHFKYIEAAAKTGQIKEVERVTRESNFYDPEKTKNFLMEAKLPDARPLINVCDRFGFVPDLTHYLYTNNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPEDFIKGLILSVRSLLPVEPLVEECEKRNRLRLLTQFLEHLVSEGSQDVHVHNALGKIIIDSNNNPEHFLTTNPYYDSRVVGKYCEKRDPTLAVVAYRRGQCDDELINVTNKNSLFKLQARYVVERMDADLWEKVLTPENEYRRQLIDQVVSTALPESKSPEQVSAAVKAFMTADLPHELIELLEKIVLQNSAFSGNFNLQNLLILTAIKADPSRVMDYVNRLDNFDGPAVGEVAVEAQLYEEAFAIFKKFNLNVQAVNVLLDNIRSIERAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIESFIRADDATQFLDVIRAAEDADVYHDLVRYLLMVRQKVKEPKVDSELIYAYAKIDRLGDIEEFILMPNVANLQNVGDRLYDDTLYEAAKIIYAFISNWAKLAVTLVKLKQFQGAVDAARKANSAKTWKEVCFACVDAEEFRLAQICGLNIIVQVDDLEEVSEYYQNRGYFNELISLMESGLGLERAHMGIFTELGVLYARYRYEKLMEHIKLFSTRLNIPKLIRACDEQQHWKELTYLYIQYDEFDNAATTIMNHSPEAWDHMQFKDVAVKVANVELYYKAVHFYLQEHPDLINDLLNVLALRVDHTRVVDIMRKAGHLLLVKPYMVAVQSNNVSAVNEALNEIYVEEEDYERLRESIDMHDNFDQIGLARRLRN*****

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1520	2.2.26 [Sep-21-2011]
Q0WNJ6		1705	Clathrin heavy chain 1 OS	yes	no	0.995	0.887	0.943	0.0
Q0WLB5		1703	Clathrin heavy chain 2 OS	yes	no	0.995	0.888	0.937	0.0
Q2QYW2		1708	Clathrin heavy chain 2 OS	yes	no	0.995	0.885	0.937	0.0
Q2RBN7		1708	Clathrin heavy chain 1 OS	yes	no	0.995	0.885	0.937	0.0
Q68FD5		1675	Clathrin heavy chain 1 OS	yes	no	0.981	0.890	0.575	0.0
Q00610		1675	Clathrin heavy chain 1 OS	yes	no	0.981	0.890	0.575	0.0
P49951		1675	Clathrin heavy chain 1 OS	yes	no	0.981	0.890	0.575	0.0
P11442		1675	Clathrin heavy chain 1 OS	yes	no	0.981	0.890	0.574	0.0
P29742		1678	Clathrin heavy chain OS=D	yes	no	0.981	0.889	0.578	0.0
P25870		1694	Clathrin heavy chain OS=D	yes	no	0.983	0.882	0.557	0.0

>sp\|Q0WNJ6\|CLAH1_ARATH Clathrin heavy chain 1 OS=Arabidopsis thaliana GN=CHC1 PE=1 SV=1	Back alignment and function desciption

 Score = 2994 bits (7762), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1428/1513 (94%), Positives = 1483/1513 (98%)

Query: 1    MAAANAPISMKEVLTLPSVGINPQFITFTNVTMESDKYICVRETAPQNSVVIIDMNQPMQ 60
            MAAANAPI MKEVLTLPSVGI  QFITFTNVTMESDKYICVRETAPQNSVVIIDMN PMQ
Sbjct: 1    MAAANAPIIMKEVLTLPSVGIGQQFITFTNVTMESDKYICVRETAPQNSVVIIDMNMPMQ 60

Query: 61   PLRRPITADSALMNPNSRILALKAQLPGTTQDHLQIFNIELKAKIKSHQMSEQVVFWKWI 120
            PLRRPITADSALMNPNSRILALKAQ+PGTTQDHLQIFNIE KAK+KSHQM EQV FWKWI
Sbjct: 61   PLRRPITADSALMNPNSRILALKAQVPGTTQDHLQIFNIEAKAKLKSHQMPEQVAFWKWI 120

Query: 121  SPKMLGVVTQTSVYHWSIEGDSEPVKMFDRTANLTNNQIINYKCDPTEKWLVLIGIAPGS 180
            +PKMLG+VTQTSVYHWSIEGDSEPVKMFDRTANL NNQIINYKC P EKWLVLIGIAPGS
Sbjct: 121  TPKMLGLVTQTSVYHWSIEGDSEPVKMFDRTANLANNQIINYKCSPNEKWLVLIGIAPGS 180

Query: 181  AERPQLVKGNMQLFSVDQQRSQALEAHAASFAQFKVPGNENPSVLISFATKSFNAGQVTS 240
             ERPQLVKGNMQLFSVDQQRSQALEAHAASFAQFKVPGNENPS+LISFA+KSFNAGQ+TS
Sbjct: 181  PERPQLVKGNMQLFSVDQQRSQALEAHAASFAQFKVPGNENPSILISFASKSFNAGQITS 240

Query: 241  KLHVIELGAQPGKPSFTKKQADLFFPPDFADDFPVAMQISHKYGLIYVITKLGLLFVYDL 300
            KLHVIELGAQPGKPSFTKKQADLFFPPDFADDFPVAMQ+SHK+ LIYVITKLGLLFVYDL
Sbjct: 241  KLHVIELGAQPGKPSFTKKQADLFFPPDFADDFPVAMQVSHKFNLIYVITKLGLLFVYDL 300

Query: 301  ETAAAVYRNRISPDPIFLTSEASSLGGFYAINRRGQVLLATVNEATIVPFVSGQLNNLEL 360
            ETA+A+YRNRISPDPIFLTSEASS+GGFYAINRRGQVLLATVNEATI+PF+SGQLNNLEL
Sbjct: 301  ETASAIYRNRISPDPIFLTSEASSVGGFYAINRRGQVLLATVNEATIIPFISGQLNNLEL 360

Query: 361  AVNLAKRGNLPGAENLVVQRFQELFAQTKYKEAAELAAESPQGLLRTPDTVAKFQSVPVQ 420
            AVNLAKRGNLPGAENLVVQRFQELFAQTKYKEAAELAAESPQG+LRTPDTVAKFQSVPVQ
Sbjct: 361  AVNLAKRGNLPGAENLVVQRFQELFAQTKYKEAAELAAESPQGILRTPDTVAKFQSVPVQ 420

Query: 421  AGQTPPLLQYFGTLLTRGKLNAFESLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLV 480
            AGQTPPLLQYFGTLLTRGKLN++ESLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLV
Sbjct: 421  AGQTPPLLQYFGTLLTRGKLNSYESLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLV 480

Query: 481  KTVDNDLALKIYIKARATPKVVAAFAERREFDKILIYSKQVGYTPDYLFLLQTILRTDPQ 540
            KTVDNDLALKIYIKARATPKVVAAFAERREFDKILIYSKQVGYTPDY+FLLQTILRTDPQ
Sbjct: 481  KTVDNDLALKIYIKARATPKVVAAFAERREFDKILIYSKQVGYTPDYMFLLQTILRTDPQ 540

Query: 541  GAVNFALMMSQMEGGCPVDYNTITDLFLQRNLIREATAFLLDVLKPNLPEHGFLQTKVLE 600
            GAVNFALMMSQMEGGCPVDYNTITDLFLQRNLIREATAFLLDVLKPNLPEH FLQTKVLE
Sbjct: 541  GAVNFALMMSQMEGGCPVDYNTITDLFLQRNLIREATAFLLDVLKPNLPEHAFLQTKVLE 600

Query: 601  INLVTFPNVADAILANGMFSHYDRPRIAQLCEKAGLYMRALQHYTELPDIKRVIVNTHAI 660
            INLVTFPNVADAILANGMFSHYDRPR+AQLCEKAGLY+++L+HY+ELPDIKRVIVNTHAI
Sbjct: 601  INLVTFPNVADAILANGMFSHYDRPRVAQLCEKAGLYIQSLKHYSELPDIKRVIVNTHAI 660

Query: 661  EPQSLVEFFGTLSREWALECMKDLLLVNLRGNLQIIVQTAKEYCEQLGVEACIKLFEQFK 720
            EPQ+LVEFFGTLS EWA+ECMKDLLLVNLRGNLQIIVQ  KEYCEQLGV+ACIKLFEQFK
Sbjct: 661  EPQALVEFFGTLSSEWAMECMKDLLLVNLRGNLQIIVQACKEYCEQLGVDACIKLFEQFK 720

Query: 721  SYEGLYFFLGSYLSSSEDPDIHFKYIEAAAKTGQIKEVERVTRESNFYDPEKTKNFLMEA 780
            SYEGLYFFLGSYLS SEDP+IHFKYIEAAAKTGQIKEVERVTRESNFYD EKTKNFLMEA
Sbjct: 721  SYEGLYFFLGSYLSMSEDPEIHFKYIEAAAKTGQIKEVERVTRESNFYDAEKTKNFLMEA 780

Query: 781  KLPDARPLINVCDRFGFVPDLTHYLYTNNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPE 840
            KLPDARPLINVCDRFGFVPDLTHYLYTNNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPE
Sbjct: 781  KLPDARPLINVCDRFGFVPDLTHYLYTNNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPE 840

Query: 841  DFIKGLILSVRSLLPVEPLVEECEKRNRLRLLTQFLEHLVSEGSQDVHVHNALGKIIIDS 900
            DFIKGLILSVRSLLPVEPLV ECEKRNRLRLLTQFLEHLVSEGSQDVHVHNALGKIIIDS
Sbjct: 841  DFIKGLILSVRSLLPVEPLVAECEKRNRLRLLTQFLEHLVSEGSQDVHVHNALGKIIIDS 900

Query: 901  NNNPEHFLTTNPYYDSRVVGKYCEKRDPTLAVVAYRRGQCDDELINVTNKNSLFKLQARY 960
            NNNPEHFLTTNPYYDS+VVGKYCEKRDPTLAVVAYRRGQCD+ELINVTNKNSLFKLQARY
Sbjct: 901  NNNPEHFLTTNPYYDSKVVGKYCEKRDPTLAVVAYRRGQCDEELINVTNKNSLFKLQARY 960

Query: 961  VVERMDADLWEKVLTPENEYRRQLIDQVVSTALPESKSPEQVSAAVKAFMTADLPHELIE 1020
            VVERMD DLWEKVLT ENEYRRQLIDQVVSTALPESKSPEQVSAAVKAFMTADLPHELIE
Sbjct: 961  VVERMDGDLWEKVLTEENEYRRQLIDQVVSTALPESKSPEQVSAAVKAFMTADLPHELIE 1020

Query: 1021 LLEKIVLQNSAFSGNFNLQNLLILTAIKADPSRVMDYVNRLDNFDGPAVGEVAVEAQLYE 1080
            LLEKIVLQNSAFSGNFNLQNLLILTAIKADPSRVMDY+NRLDNFDGPAVGEVAV+AQLYE
Sbjct: 1021 LLEKIVLQNSAFSGNFNLQNLLILTAIKADPSRVMDYINRLDNFDGPAVGEVAVDAQLYE 1080

Query: 1081 EAFAIFKKFNLNVQAVNVLLDNIRSIERAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIE 1140
            EAFAIFKKFNLNVQAVNVLLDN+RSIERAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIE
Sbjct: 1081 EAFAIFKKFNLNVQAVNVLLDNVRSIERAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIE 1140

Query: 1141 SFIRADDATQFLDVIRAAEDADVYHDLVRYLLMVRQKVKEPKVDSELIYAYAKIDRLGDI 1200
            SFIRADD TQFL+VIRA+ED +VY DLVRYLLMVRQKVKEPKVDSELIYAYAKI+RLG+I
Sbjct: 1141 SFIRADDTTQFLEVIRASEDTNVYDDLVRYLLMVRQKVKEPKVDSELIYAYAKIERLGEI 1200

Query: 1201 EEFILMPNVANLQNVGDRLYDDTLYEAAKIIYAFISNWAKLAVTLVKLKQFQGAVDAARK 1260
            EEFILMPNVANLQ+VGDRLYD+ LYEAAKIIYAFISNWAKLAVTLVKL+QFQGAVDAARK
Sbjct: 1201 EEFILMPNVANLQHVGDRLYDEALYEAAKIIYAFISNWAKLAVTLVKLQQFQGAVDAARK 1260

Query: 1261 ANSAKTWKEVCFACVDAEEFRLAQICGLNIIVQVDDLEEVSEYYQNRGYFNELISLMESG 1320
            ANSAKTWKEVCFACVDAEEFRLAQICGLNII+QVDDLEEVSEYYQNRG FNELISLMESG
Sbjct: 1261 ANSAKTWKEVCFACVDAEEFRLAQICGLNIIIQVDDLEEVSEYYQNRGCFNELISLMESG 1320

Query: 1321 LGLERAHMGIFTELGVLYARYRYEKLMEHIKLFSTRLNIPKLIRACDEQQHWKELTYLYI 1380
            LGLERAHMGIFTELGVLYARYRYEKLMEHIKLFSTRLNIPKLIRACDEQQHW+ELTYLYI
Sbjct: 1321 LGLERAHMGIFTELGVLYARYRYEKLMEHIKLFSTRLNIPKLIRACDEQQHWQELTYLYI 1380

Query: 1381 QYDEFDNAATTIMNHSPEAWDHMQFKDVAVKVANVELYYKAVHFYLQEHPDLINDLLNVL 1440
            QYDEFDNAATT+MNHSPEAW+HMQFKD+  KVANVELYYKAVHFYLQEHPD+INDLLNVL
Sbjct: 1381 QYDEFDNAATTVMNHSPEAWEHMQFKDIVAKVANVELYYKAVHFYLQEHPDIINDLLNVL 1440

Query: 1441 ALRVDHTRVVDIMRKAGHLLLVKPYMVAVQSNNVSAVNEALNEIYVEEEDYERLRESIDM 1500
            ALR+DHTRVVDIMRKAGHL L+KPYMVAVQSNNVSAVNEALNEIY EEEDY+RLRESID+
Sbjct: 1441 ALRLDHTRVVDIMRKAGHLRLIKPYMVAVQSNNVSAVNEALNEIYAEEEDYDRLRESIDL 1500

Query: 1501 HDNFDQIGLARRL 1513
            HD+FDQIGLA+++
Sbjct: 1501 HDSFDQIGLAQKI 1513

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles (By similarity). Mediates endocytosis and is required for a correct polar distribution of PIN auxin transporters.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q0WLB5\|CLAH2_ARATH Clathrin heavy chain 2 OS=Arabidopsis thaliana GN=CHC2 PE=1 SV=1	Back alignment and function description

>sp\|Q2QYW2\|CLH2_ORYSJ Clathrin heavy chain 2 OS=Oryza sativa subsp. japonica GN=Os12g0104800 PE=3 SV=1	Back alignment and function description

>sp\|Q2RBN7\|CLH1_ORYSJ Clathrin heavy chain 1 OS=Oryza sativa subsp. japonica GN=Os11g0104900 PE=3 SV=1	Back alignment and function description

>sp\|Q68FD5\|CLH1_MOUSE Clathrin heavy chain 1 OS=Mus musculus GN=Cltc PE=1 SV=3	Back alignment and function description

>sp\|Q00610\|CLH1_HUMAN Clathrin heavy chain 1 OS=Homo sapiens GN=CLTC PE=1 SV=5	Back alignment and function description

>sp\|P49951\|CLH1_BOVIN Clathrin heavy chain 1 OS=Bos taurus GN=CLTC PE=1 SV=1	Back alignment and function description

>sp\|P11442\|CLH1_RAT Clathrin heavy chain 1 OS=Rattus norvegicus GN=Cltc PE=1 SV=3	Back alignment and function description

>sp\|P29742\|CLH_DROME Clathrin heavy chain OS=Drosophila melanogaster GN=Chc PE=2 SV=1	Back alignment and function description

>sp\|P25870\|CLH_DICDI Clathrin heavy chain OS=Dictyostelium discoideum GN=chcA PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1520
255574808		1705	clathrin heavy chain, putative [Ricinus	0.995	0.887	0.961	0.0
224112467		1705	predicted protein [Populus trichocarpa]	0.995	0.887	0.951	0.0
225434540		1705	PREDICTED: clathrin heavy chain 2 [Vitis	0.995	0.887	0.953	0.0
356539985		1700	PREDICTED: clathrin heavy chain 1-like [	0.995	0.89	0.950	0.0
297833898		1702	hypothetical protein ARALYDRAFT_478454 [	0.995	0.888	0.945	0.0
30681617		1705	Clathrin, heavy chain [Arabidopsis thali	0.995	0.887	0.943	0.0
6016683		1705	putative clathrin heavy chain [Arabidops	0.995	0.887	0.943	0.0
225448483		1704	PREDICTED: clathrin heavy chain 1 [Vitis	0.995	0.887	0.945	0.0
297833602		1703	hypothetical protein ARALYDRAFT_896987 [	0.995	0.888	0.941	0.0
356501173		1707	PREDICTED: clathrin heavy chain 1-like [	0.995	0.886	0.949	0.0

>gi\|255574808\|ref\|XP_002528311.1\| clathrin heavy chain, putative [Ricinus communis] gi\|223532266\|gb\|EEF34069.1\| clathrin heavy chain, putative [Ricinus communis]	Back alignment and taxonomy information

 Score = 3012 bits (7809), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1454/1513 (96%), Positives = 1495/1513 (98%)

Query: 1    MAAANAPISMKEVLTLPSVGINPQFITFTNVTMESDKYICVRETAPQNSVVIIDMNQPMQ 60
            MAAANAPI+MKEVLTLP++GI+PQFITFTNVTMESDKYICVRETAPQNSVVIIDMN PMQ
Sbjct: 1    MAAANAPITMKEVLTLPTIGISPQFITFTNVTMESDKYICVRETAPQNSVVIIDMNMPMQ 60

Query: 61   PLRRPITADSALMNPNSRILALKAQLPGTTQDHLQIFNIELKAKIKSHQMSEQVVFWKWI 120
            PLRRPITADSALMNPNSRILALKAQLPGTTQDHLQIFNIE+KAK+KSHQM EQVVFWKWI
Sbjct: 61   PLRRPITADSALMNPNSRILALKAQLPGTTQDHLQIFNIEMKAKMKSHQMPEQVVFWKWI 120

Query: 121  SPKMLGVVTQTSVYHWSIEGDSEPVKMFDRTANLTNNQIINYKCDPTEKWLVLIGIAPGS 180
            SPKMLG+VTQTSVYHWSIEGDSEPVKMF+RTANL NNQIINY+CDP+EKWLVLIGIAPGS
Sbjct: 121  SPKMLGLVTQTSVYHWSIEGDSEPVKMFERTANLVNNQIINYRCDPSEKWLVLIGIAPGS 180

Query: 181  AERPQLVKGNMQLFSVDQQRSQALEAHAASFAQFKVPGNENPSVLISFATKSFNAGQVTS 240
             ER QLVKGNMQLFSVDQQRSQALEAHAA+FAQFKVPGNENPS LISFATK+FNAGQ+TS
Sbjct: 181  PERQQLVKGNMQLFSVDQQRSQALEAHAAAFAQFKVPGNENPSTLISFATKTFNAGQITS 240

Query: 241  KLHVIELGAQPGKPSFTKKQADLFFPPDFADDFPVAMQISHKYGLIYVITKLGLLFVYDL 300
            KLHVIELGAQPGKPSFTKKQADLFFPPDFADDFPVAMQISHKY LIYVITKLGLLFVYDL
Sbjct: 241  KLHVIELGAQPGKPSFTKKQADLFFPPDFADDFPVAMQISHKYSLIYVITKLGLLFVYDL 300

Query: 301  ETAAAVYRNRISPDPIFLTSEASSLGGFYAINRRGQVLLATVNEATIVPFVSGQLNNLEL 360
            ETA+AVYRNRISPDPIFLT+EASS GGFY+INRRGQVLLATVNEATIVPFVSGQLNNLEL
Sbjct: 301  ETASAVYRNRISPDPIFLTAEASSAGGFYSINRRGQVLLATVNEATIVPFVSGQLNNLEL 360

Query: 361  AVNLAKRGNLPGAENLVVQRFQELFAQTKYKEAAELAAESPQGLLRTPDTVAKFQSVPVQ 420
            AVNLAKRGNLPGAENLVVQRFQELFAQTKYKEAAELAAESPQG+LRTPDTVAKFQSVPVQ
Sbjct: 361  AVNLAKRGNLPGAENLVVQRFQELFAQTKYKEAAELAAESPQGILRTPDTVAKFQSVPVQ 420

Query: 421  AGQTPPLLQYFGTLLTRGKLNAFESLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLV 480
             GQTPPLLQYFGTLLTRGKLNAFESLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLV
Sbjct: 421  TGQTPPLLQYFGTLLTRGKLNAFESLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLV 480

Query: 481  KTVDNDLALKIYIKARATPKVVAAFAERREFDKILIYSKQVGYTPDYLFLLQTILRTDPQ 540
            KTVDNDLALKI+IKARATPKVVAAFAERREFDKILIYSKQVGYTPDYLFLLQTILR+DPQ
Sbjct: 481  KTVDNDLALKIFIKARATPKVVAAFAERREFDKILIYSKQVGYTPDYLFLLQTILRSDPQ 540

Query: 541  GAVNFALMMSQMEGGCPVDYNTITDLFLQRNLIREATAFLLDVLKPNLPEHGFLQTKVLE 600
            GAVNFALMMSQMEGGCPVDYNTITDLFLQRNLIREATAFLLDVLKPNLPEH FLQTKVLE
Sbjct: 541  GAVNFALMMSQMEGGCPVDYNTITDLFLQRNLIREATAFLLDVLKPNLPEHSFLQTKVLE 600

Query: 601  INLVTFPNVADAILANGMFSHYDRPRIAQLCEKAGLYMRALQHYTELPDIKRVIVNTHAI 660
            INLVTFPNVADAILANGMFSHYDRPRIAQLCEKAGLY+RALQHY+ELPDIKRVIVNTHAI
Sbjct: 601  INLVTFPNVADAILANGMFSHYDRPRIAQLCEKAGLYIRALQHYSELPDIKRVIVNTHAI 660

Query: 661  EPQSLVEFFGTLSREWALECMKDLLLVNLRGNLQIIVQTAKEYCEQLGVEACIKLFEQFK 720
            EPQ+LVEFFGTLSREWALECMKDLLLVNLRGNLQIIVQ AKEYCEQLGV+ACIKLFEQFK
Sbjct: 661  EPQALVEFFGTLSREWALECMKDLLLVNLRGNLQIIVQAAKEYCEQLGVDACIKLFEQFK 720

Query: 721  SYEGLYFFLGSYLSSSEDPDIHFKYIEAAAKTGQIKEVERVTRESNFYDPEKTKNFLMEA 780
            SYEGLYFFLGSYLSSSEDPDIHFKYIEAAAKTGQIKEVERVTRESNFYD EKTKNFLMEA
Sbjct: 721  SYEGLYFFLGSYLSSSEDPDIHFKYIEAAAKTGQIKEVERVTRESNFYDAEKTKNFLMEA 780

Query: 781  KLPDARPLINVCDRFGFVPDLTHYLYTNNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPE 840
            KLPDARPLINVCDRFGFV DLTHYLY+NNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPE
Sbjct: 781  KLPDARPLINVCDRFGFVADLTHYLYSNNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPE 840

Query: 841  DFIKGLILSVRSLLPVEPLVEECEKRNRLRLLTQFLEHLVSEGSQDVHVHNALGKIIIDS 900
            DFIKGLILSVRSLLPVEPLVEECEKRNRLRLLTQFLEHLVSEGSQDVHVHNALGKIIIDS
Sbjct: 841  DFIKGLILSVRSLLPVEPLVEECEKRNRLRLLTQFLEHLVSEGSQDVHVHNALGKIIIDS 900

Query: 901  NNNPEHFLTTNPYYDSRVVGKYCEKRDPTLAVVAYRRGQCDDELINVTNKNSLFKLQARY 960
            NNNPEHFLTTNPYYDSRVVGKYCEKRDPTLAVVAYRRGQCDDELINVTNKNSLFKLQARY
Sbjct: 901  NNNPEHFLTTNPYYDSRVVGKYCEKRDPTLAVVAYRRGQCDDELINVTNKNSLFKLQARY 960

Query: 961  VVERMDADLWEKVLTPENEYRRQLIDQVVSTALPESKSPEQVSAAVKAFMTADLPHELIE 1020
            VVERMDADLWEKVL PENEYRRQLIDQVVSTALPESKSPEQVSAAVKAFMTADLPHELIE
Sbjct: 961  VVERMDADLWEKVLNPENEYRRQLIDQVVSTALPESKSPEQVSAAVKAFMTADLPHELIE 1020

Query: 1021 LLEKIVLQNSAFSGNFNLQNLLILTAIKADPSRVMDYVNRLDNFDGPAVGEVAVEAQLYE 1080
            LLEKIVLQNSAFSGNFNLQNLLILTAIKADPSRVMDY+NRLDNFDGPAVGEVAVEAQLYE
Sbjct: 1021 LLEKIVLQNSAFSGNFNLQNLLILTAIKADPSRVMDYINRLDNFDGPAVGEVAVEAQLYE 1080

Query: 1081 EAFAIFKKFNLNVQAVNVLLDNIRSIERAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIE 1140
            EAFAIFKKFNLNVQAVNVLLDNIRSI+RAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIE
Sbjct: 1081 EAFAIFKKFNLNVQAVNVLLDNIRSIDRAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIE 1140

Query: 1141 SFIRADDATQFLDVIRAAEDADVYHDLVRYLLMVRQKVKEPKVDSELIYAYAKIDRLGDI 1200
            SFIRADDATQFL+VIRAAEDA+VYHDLVRYLLMVRQK KEPKVDSELI+AYAKIDRL DI
Sbjct: 1141 SFIRADDATQFLEVIRAAEDANVYHDLVRYLLMVRQKAKEPKVDSELIFAYAKIDRLSDI 1200

Query: 1201 EEFILMPNVANLQNVGDRLYDDTLYEAAKIIYAFISNWAKLAVTLVKLKQFQGAVDAARK 1260
            EEFILMPNVANLQNVGDRL+D+ LYEAAKII+AFISNWAKLAVTLV+LKQFQGAVDAARK
Sbjct: 1201 EEFILMPNVANLQNVGDRLFDEALYEAAKIIFAFISNWAKLAVTLVRLKQFQGAVDAARK 1260

Query: 1261 ANSAKTWKEVCFACVDAEEFRLAQICGLNIIVQVDDLEEVSEYYQNRGYFNELISLMESG 1320
            ANSAKTWKEVCFACVDAEEFRLAQICGLNII+QVDDLEEVSEYYQNRGYFNELISLMESG
Sbjct: 1261 ANSAKTWKEVCFACVDAEEFRLAQICGLNIIIQVDDLEEVSEYYQNRGYFNELISLMESG 1320

Query: 1321 LGLERAHMGIFTELGVLYARYRYEKLMEHIKLFSTRLNIPKLIRACDEQQHWKELTYLYI 1380
            LGLERAHMGIFTELGVLYARYR +KLMEHIKLFSTRLNIPKLIRACDEQQHWKELTYLYI
Sbjct: 1321 LGLERAHMGIFTELGVLYARYRPDKLMEHIKLFSTRLNIPKLIRACDEQQHWKELTYLYI 1380

Query: 1381 QYDEFDNAATTIMNHSPEAWDHMQFKDVAVKVANVELYYKAVHFYLQEHPDLINDLLNVL 1440
            QYDEFDNAATTIMNHSPEAWDHMQFKDVAVKVANVELYYKAVHFYLQEHPDLINDLLNVL
Sbjct: 1381 QYDEFDNAATTIMNHSPEAWDHMQFKDVAVKVANVELYYKAVHFYLQEHPDLINDLLNVL 1440

Query: 1441 ALRVDHTRVVDIMRKAGHLLLVKPYMVAVQSNNVSAVNEALNEIYVEEEDYERLRESIDM 1500
            ALRVDHTRVVDIMRKAGHLLLVKPYM+AVQSNNVSAVNEALN+IYVEEEDYERLRESID+
Sbjct: 1441 ALRVDHTRVVDIMRKAGHLLLVKPYMIAVQSNNVSAVNEALNQIYVEEEDYERLRESIDL 1500

Query: 1501 HDNFDQIGLARRL 1513
            HDNFDQIGLA+++
Sbjct: 1501 HDNFDQIGLAQKI 1513

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224112467\|ref\|XP_002316201.1\| predicted protein [Populus trichocarpa] gi\|222865241\|gb\|EEF02372.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|225434540\|ref\|XP_002276855.1\| PREDICTED: clathrin heavy chain 2 [Vitis vinifera] gi\|297745873\|emb\|CBI15929.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356539985\|ref\|XP_003538472.1\| PREDICTED: clathrin heavy chain 1-like [Glycine max]	Back alignment and taxonomy information

>gi\|297833898\|ref\|XP_002884831.1\| hypothetical protein ARALYDRAFT_478454 [Arabidopsis lyrata subsp. lyrata] gi\|297330671\|gb\|EFH61090.1\| hypothetical protein ARALYDRAFT_478454 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|30681617\|ref\|NP_187724.2\| Clathrin, heavy chain [Arabidopsis thaliana] gi\|122223702\|sp\|Q0WNJ6.1\|CLAH1_ARATH RecName: Full=Clathrin heavy chain 1 gi\|110738758\|dbj\|BAF01303.1\| hypothetical protein [Arabidopsis thaliana] gi\|332641484\|gb\|AEE75005.1\| Clathrin, heavy chain [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|6016683\|gb\|AAF01510.1\|AC009991_6 putative clathrin heavy chain [Arabidopsis thaliana] gi\|12321871\|gb\|AAG50967.1\|AC073395_9 clathrin heavy chain, putative; 28833-19741 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|225448483\|ref\|XP_002269905.1\| PREDICTED: clathrin heavy chain 1 [Vitis vinifera] gi\|147866332\|emb\|CAN79917.1\| hypothetical protein VITISV_005429 [Vitis vinifera] gi\|297736586\|emb\|CBI25457.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297833602\|ref\|XP_002884683.1\| hypothetical protein ARALYDRAFT_896987 [Arabidopsis lyrata subsp. lyrata] gi\|297330523\|gb\|EFH60942.1\| hypothetical protein ARALYDRAFT_896987 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|356501173\|ref\|XP_003519402.1\| PREDICTED: clathrin heavy chain 1-like [Glycine max]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1520
TAIR\|locus:2074733		1705	AT3G11130 [Arabidopsis thalian	0.995	0.887	0.911	0.0
TAIR\|locus:2103442		1703	AT3G08530 [Arabidopsis thalian	0.995	0.888	0.904	0.0
MGI\|MGI:2388633		1675	Cltc "clathrin, heavy polypept	0.981	0.890	0.559	0.0
UNIPROTKB\|P49951		1675	CLTC "Clathrin heavy chain 1"	0.981	0.890	0.558	0.0
UNIPROTKB\|Q00610		1675	CLTC "Clathrin heavy chain 1"	0.981	0.890	0.558	0.0
UNIPROTKB\|D4AD25		1679	Cltc "Clathrin heavy chain 1"	0.984	0.891	0.557	0.0
UNIPROTKB\|F1NYC4		1681	CLTCL1 "Uncharacterized protei	0.980	0.886	0.560	0.0
UNIPROTKB\|F1PHQ0		1675	CLTC "Uncharacterized protein"	0.981	0.890	0.558	0.0
FB\|FBgn0000319		1678	Chc "Clathrin heavy chain" [Dr	0.981	0.889	0.562	0.0
ZFIN\|ZDB-GENE-050227-12		1683	cltcb "clathrin, heavy polypep	0.984	0.889	0.556	0.0

TAIR\|locus:2074733 AT3G11130 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 7134 (2516.4 bits), Expect = 0., P = 0.
 Identities = 1379/1513 (91%), Positives = 1434/1513 (94%)

Query:     1 MAAANAPISMKEVLTLPSVGINPQFITFTNVTMESDKYICVRETAPQNSVVIIDMNQPMQ 60
             MAAANAPI MKEVLTLPSVGI  QFITFTNVTMESDKYICVRETAPQNSVVIIDMN PMQ
Sbjct:     1 MAAANAPIIMKEVLTLPSVGIGQQFITFTNVTMESDKYICVRETAPQNSVVIIDMNMPMQ 60

Query:    61 PLRRPITADSALMNPNSRILALKAQLPGTTQDHLQIFNIELKAKIKSHQMSEQVVFWKWI 120
             PLRRPITADSALMNPNSRILALKAQ+PGTTQDHLQIFNIE KAK+KSHQM EQV FWKWI
Sbjct:    61 PLRRPITADSALMNPNSRILALKAQVPGTTQDHLQIFNIEAKAKLKSHQMPEQVAFWKWI 120

Query:   121 SPKMLGVVTQTSVYHWSIEGDSEPVKMFDRTANLTNNQIINYKCDPTEKWLVLIGIAPGS 180
             +PKMLG+VTQTSVYHWSIEGDSEPVKMFDRTANL NNQIINYKC P EKWLVLIGIAPGS
Sbjct:   121 TPKMLGLVTQTSVYHWSIEGDSEPVKMFDRTANLANNQIINYKCSPNEKWLVLIGIAPGS 180

Query:   181 AERPQLVKGNMQLFSVDQQRSQALEAHAASFAQFKVPGNENPSVLISFATKSFNAGQVTS 240
              ERPQLVKGNMQLFSVDQQRSQALEAHAASFAQFKVPGNENPS+LISFA+KSFNAGQ+TS
Sbjct:   181 PERPQLVKGNMQLFSVDQQRSQALEAHAASFAQFKVPGNENPSILISFASKSFNAGQITS 240

Query:   241 KLHVIELGAQPGKPSFTKKQXXXXXXXXXXXXXXXXMQISHKYGLIYVITKLGLLFVYDL 300
             KLHVIELGAQPGKPSFTKKQ                MQ+SHK+ LIYVITKLGLLFVYDL
Sbjct:   241 KLHVIELGAQPGKPSFTKKQADLFFPPDFADDFPVAMQVSHKFNLIYVITKLGLLFVYDL 300

Query:   301 ETAAAVYRNRISPDPIFLTSEASSLGGFYAINRRGQVLLATVNEATIVPFVSGQLNNLEL 360
             ETA+A+YRNRISPDPIFLTSEASS+GGFYAINRRGQVLLATVNEATI+PF+SGQLNNLEL
Sbjct:   301 ETASAIYRNRISPDPIFLTSEASSVGGFYAINRRGQVLLATVNEATIIPFISGQLNNLEL 360

Query:   361 AVNLAKRGNLPGAENLVVQRFQELFAQTKYKEAAELAAESPQGLLRTPDTVAKFQSVPVQ 420
             AVNLAKRGNLPGAENLVVQRFQELFAQTKYKEAAELAAESPQG+LRTPDTVAKFQSVPVQ
Sbjct:   361 AVNLAKRGNLPGAENLVVQRFQELFAQTKYKEAAELAAESPQGILRTPDTVAKFQSVPVQ 420

Query:   421 AGQTPPLLQYFGTLLTRGKLNAFESLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLV 480
             AGQTPPLLQYFGTLLTRGKLN++ESLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLV
Sbjct:   421 AGQTPPLLQYFGTLLTRGKLNSYESLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLV 480

Query:   481 KTVDNDLALKIYIKARATPKVVAAFAERREFDKILIYSKQVGYTPDYLFLLQTILRTDPQ 540
             KTVDNDLALKIYIKARATPKVVAAFAERREFDKILIYSKQVGYTPDY+FLLQTILRTDPQ
Sbjct:   481 KTVDNDLALKIYIKARATPKVVAAFAERREFDKILIYSKQVGYTPDYMFLLQTILRTDPQ 540

Query:   541 GAVNFALMMSQMEGGCPVDYNTITDLFLQRNLIREATAFLLDVLKPNLPEHGFLQTKVLE 600
             GAVNFALMMSQMEGGCPVDYNTITDLFLQRNLIREATAFLLDVLKPNLPEH FLQTKVLE
Sbjct:   541 GAVNFALMMSQMEGGCPVDYNTITDLFLQRNLIREATAFLLDVLKPNLPEHAFLQTKVLE 600

Query:   601 INLVTFPNVADAILANGMFSHYDRPRIAQLCEKAGLYMRALQHYTELPDIKRVIVNTHAI 660
             INLVTFPNVADAILANGMFSHYDRPR+AQLCEKAGLY+++L+HY+ELPDIKRVIVNTHAI
Sbjct:   601 INLVTFPNVADAILANGMFSHYDRPRVAQLCEKAGLYIQSLKHYSELPDIKRVIVNTHAI 660

Query:   661 EPQSLVEFFGTLSREWALECMKDLLLVNLRGNLQIIVQTAKEYCEQLGVEACIKLFEQFK 720
             EPQ+LVEFFGTLS EWA+ECMKDLLLVNLRGNLQIIVQ  KEYCEQLGV+ACIKLFEQFK
Sbjct:   661 EPQALVEFFGTLSSEWAMECMKDLLLVNLRGNLQIIVQACKEYCEQLGVDACIKLFEQFK 720

Query:   721 SYEXXXXXXXXXXXXXEDPDIHFKYIEAAAKTGQIKEVERVTRESNFYDPEKTKNFLMEA 780
             SYE             EDP+IHFKYIEAAAKTGQIKEVERVTRESNFYD EKTKNFLMEA
Sbjct:   721 SYEGLYFFLGSYLSMSEDPEIHFKYIEAAAKTGQIKEVERVTRESNFYDAEKTKNFLMEA 780

Query:   781 KLPDARPLINVCDRFGFVPDLTHYLYTNNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPE 840
             KLPDARPLINVCDRFGFVPDLTHYLYTNNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPE
Sbjct:   781 KLPDARPLINVCDRFGFVPDLTHYLYTNNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPE 840

Query:   841 DFIKGLILSVRSXXXXXXXXXXCEKRNRLRLLTQFLEHLVSEGSQDVHVHNALGKIIIDS 900
             DFIKGLILSVRS          CEKRNRLRLLTQFLEHLVSEGSQDVHVHNALGKIIIDS
Sbjct:   841 DFIKGLILSVRSLLPVEPLVAECEKRNRLRLLTQFLEHLVSEGSQDVHVHNALGKIIIDS 900

Query:   901 NNNPEHFLTTNPYYDSRVVGKYCEKRDPTLAVVAYRRGQCDDELINVTNKNSLFKLQARY 960
             NNNPEHFLTTNPYYDS+VVGKYCEKRDPTLAVVAYRRGQCD+ELINVTNKNSLFKLQARY
Sbjct:   901 NNNPEHFLTTNPYYDSKVVGKYCEKRDPTLAVVAYRRGQCDEELINVTNKNSLFKLQARY 960

Query:   961 VVERMDADLWEKVLTPENEYRRQLIDQVVSTALPESKSPEQVSAAVKAFMTADLPHELIE 1020
             VVERMD DLWEKVLT ENEYRRQLIDQVVSTALPESKSPEQVSAAVKAFMTADLPHELIE
Sbjct:   961 VVERMDGDLWEKVLTEENEYRRQLIDQVVSTALPESKSPEQVSAAVKAFMTADLPHELIE 1020

Query:  1021 LLEKIVLQNSAFSGNFNLQNLLILTAIKADPSRVMDYVNRLDNFDGPAVGEVAVEAQLYE 1080
             LLEKIVLQNSAFSGNFNLQNLLILTAIKADPSRVMDY+NRLDNFDGPAVGEVAV+AQLYE
Sbjct:  1021 LLEKIVLQNSAFSGNFNLQNLLILTAIKADPSRVMDYINRLDNFDGPAVGEVAVDAQLYE 1080

Query:  1081 EAFAIFKKFNLNVQAVNVLLDNIRSIERAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIE 1140
             EAFAIFKKFNLNVQAVNVLLDN+RSIERAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIE
Sbjct:  1081 EAFAIFKKFNLNVQAVNVLLDNVRSIERAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIE 1140

Query:  1141 SFIRADDATQFLDVIRAAEDADVYHDLVRYLLMVRQKVKEPKVDSELIYAYAKIDRLGDI 1200
             SFIRADD TQFL+VIRA+ED +VY DLVRYLLMVRQKVKEPKVDSELIYAYAKI+RLG+I
Sbjct:  1141 SFIRADDTTQFLEVIRASEDTNVYDDLVRYLLMVRQKVKEPKVDSELIYAYAKIERLGEI 1200

Query:  1201 EEFILMPNVANLQNVGDRLYDDTLYEAAKIIYAFISNWAKLAVTLVKLKQFQGAVDAARK 1260
             EEFILMPNVANLQ+VGDRLYD+ LYEAAKIIYAFISNWAKLAVTLVKL+QFQGAVDAARK
Sbjct:  1201 EEFILMPNVANLQHVGDRLYDEALYEAAKIIYAFISNWAKLAVTLVKLQQFQGAVDAARK 1260

Query:  1261 ANSAKTWKEVCFACVDAEEFRLAQICGLNIIVQVDDLEEVSEYYQNRGYFNELISLMESG 1320
             ANSAKTWKEVCFACVDAEEFRLAQICGLNII+QVDDLEEVSEYYQNRG FNELISLMESG
Sbjct:  1261 ANSAKTWKEVCFACVDAEEFRLAQICGLNIIIQVDDLEEVSEYYQNRGCFNELISLMESG 1320

Query:  1321 LGLERAHMGIFTELGVLYARYRYEKLMEHIKLFSTRLNIPKLIRACDEQQHWKELTYLYI 1380
             LGLERAHMGIFTELGVLYARYRYEKLMEHIKLFSTRLNIPKLIRACDEQQHW+ELTYLYI
Sbjct:  1321 LGLERAHMGIFTELGVLYARYRYEKLMEHIKLFSTRLNIPKLIRACDEQQHWQELTYLYI 1380

Query:  1381 QYDEFDNAATTIMNHSPEAWDHMQFKDVAVKVANVELYYKAVHFYLQEHPDLINDLLNVL 1440
             QYDEFDNAATT+MNHSPEAW+HMQFKD+  KVANVELYYKAVHFYLQEHPD+INDLLNVL
Sbjct:  1381 QYDEFDNAATTVMNHSPEAWEHMQFKDIVAKVANVELYYKAVHFYLQEHPDIINDLLNVL 1440

Query:  1441 ALRVDHTRVVDIMRKAGHLLLVKPYMXXXXXXXXXXXXEALNEIYVEEEDYERLRESIDM 1500
             ALR+DHTRVVDIMRKAGHL L+KPYM            EALNEIY EEEDY+RLRESID+
Sbjct:  1441 ALRLDHTRVVDIMRKAGHLRLIKPYMVAVQSNNVSAVNEALNEIYAEEEDYDRLRESIDL 1500

Query:  1501 HDNFDQIGLARRL 1513
             HD+FDQIGLA+++
Sbjct:  1501 HDSFDQIGLAQKI 1513

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030130 "clathrin coat of trans-Golgi network vesicle" evidence=IEA

GO:0030132 "clathrin coat of coated pit" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006897 "endocytosis" evidence=IMP

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR\|locus:2103442 AT3G08530 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

MGI\|MGI:2388633 Cltc "clathrin, heavy polypeptide (Hc)" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|P49951 CLTC "Clathrin heavy chain 1" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|Q00610 CLTC "Clathrin heavy chain 1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|D4AD25 Cltc "Clathrin heavy chain 1" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NYC4 CLTCL1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|F1PHQ0 CLTC "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

FB\|FBgn0000319 Chc "Clathrin heavy chain" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-050227-12 cltcb "clathrin, heavy polypeptide b (Hc)" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P34574	CLH_CAEEL	No assigned EC number	0.5489	0.9822	0.8881	yes	no
P49951	CLH1_BOVIN	No assigned EC number	0.5752	0.9815	0.8907	yes	no
Q00610	CLH1_HUMAN	No assigned EC number	0.5752	0.9815	0.8907	yes	no
Q2RBN7	CLH1_ORYSJ	No assigned EC number	0.9378	0.9953	0.8858	yes	no
P29742	CLH_DROME	No assigned EC number	0.5781	0.9815	0.8891	yes	no
P11442	CLH1_RAT	No assigned EC number	0.5745	0.9815	0.8907	yes	no
Q10161	CLH_SCHPO	No assigned EC number	0.5039	0.9842	0.8979	yes	no
P22137	CLH_YEAST	No assigned EC number	0.4617	0.9868	0.9074	yes	no
Q0WNJ6	CLAH1_ARATH	No assigned EC number	0.9438	0.9953	0.8873	yes	no
Q0WLB5	CLAH2_ARATH	No assigned EC number	0.9372	0.9953	0.8884	yes	no
Q68FD5	CLH1_MOUSE	No assigned EC number	0.5758	0.9815	0.8907	yes	no
Q2QYW2	CLH2_ORYSJ	No assigned EC number	0.9378	0.9953	0.8858	yes	no
P25870	CLH_DICDI	No assigned EC number	0.5574	0.9835	0.8825	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1520
smart00299		140	smart00299, CLH, Clathrin heavy chain repeat homol	7e-35
smart00299		140	smart00299, CLH, Clathrin heavy chain repeat homol	2e-31
pfam13838		66	pfam13838, Clathrin_H_link, Clathrin-H-link	7e-31
smart00299		140	smart00299, CLH, Clathrin heavy chain repeat homol	4e-30
pfam00637		143	pfam00637, Clathrin, Region in Clathrin and VPS	5e-28
pfam00637		143	pfam00637, Clathrin, Region in Clathrin and VPS	9e-28
smart00299		140	smart00299, CLH, Clathrin heavy chain repeat homol	3e-27
pfam00637		143	pfam00637, Clathrin, Region in Clathrin and VPS	2e-26
smart00299		140	smart00299, CLH, Clathrin heavy chain repeat homol	1e-25
pfam00637		143	pfam00637, Clathrin, Region in Clathrin and VPS	1e-25
smart00299		140	smart00299, CLH, Clathrin heavy chain repeat homol	3e-25
pfam00637		143	pfam00637, Clathrin, Region in Clathrin and VPS	6e-23
pfam00637		143	pfam00637, Clathrin, Region in Clathrin and VPS	8e-22
pfam00637		143	pfam00637, Clathrin, Region in Clathrin and VPS	9e-15
smart00299		140	smart00299, CLH, Clathrin heavy chain repeat homol	4e-07
pfam01394		37	pfam01394, Clathrin_propel, Clathrin propeller rep	7e-06
pfam09268		24	pfam09268, Clathrin-link, Clathrin, heavy-chain li	2e-05

>gnl\|CDD\|128594 smart00299, CLH, Clathrin heavy chain repeat homology	Back alignment and domain information

 Score =  130 bits (328), Expect = 7e-35
 Identities = 38/143 (26%), Positives = 70/143 (48%), Gaps = 3/143 (2%)

Query: 1288 LNIIVQVDDLEEVSEYYQNRGYFNELISLMESGLGLERAHMGIFTELGVLYARYRYEKLM 1347
            L  +    D+ EV E ++ R    ELI  +ES L L   +  + T+L  LYA+Y  +K +
Sbjct: 1    LLEVSDPIDVSEVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYDPQKEI 60

Query: 1348 EHIKLFSTRLNIPKLIRACDEQQHWKELTYLYIQYDEFDNAATTIMNHSPEAWDHMQFKD 1407
            E +   S   +I K+ + C++ + ++E   LY +   F +A  T++ H     ++ +  +
Sbjct: 61   ERLDNKSNHYDIEKVGKLCEKAKLYEEAVELYKKDGNFKDAIVTLIEHL---GNYEKAIE 117

Query: 1408 VAVKVANVELYYKAVHFYLQEHP 1430
              VK  N EL+ + +   L +  
Sbjct: 118  YFVKQNNPELWAEVLKALLDKPR 140

Length = 140

>gnl\|CDD\|128594 smart00299, CLH, Clathrin heavy chain repeat homology	Back alignment and domain information

>gnl\|CDD\|206009 pfam13838, Clathrin_H_link, Clathrin-H-link	Back alignment and domain information

>gnl\|CDD\|128594 smart00299, CLH, Clathrin heavy chain repeat homology	Back alignment and domain information

>gnl\|CDD\|216037 pfam00637, Clathrin, Region in Clathrin and VPS	Back alignment and domain information

>gnl\|CDD\|216037 pfam00637, Clathrin, Region in Clathrin and VPS	Back alignment and domain information

>gnl\|CDD\|128594 smart00299, CLH, Clathrin heavy chain repeat homology	Back alignment and domain information

>gnl\|CDD\|216037 pfam00637, Clathrin, Region in Clathrin and VPS	Back alignment and domain information

>gnl\|CDD\|128594 smart00299, CLH, Clathrin heavy chain repeat homology	Back alignment and domain information

>gnl\|CDD\|216037 pfam00637, Clathrin, Region in Clathrin and VPS	Back alignment and domain information

>gnl\|CDD\|128594 smart00299, CLH, Clathrin heavy chain repeat homology	Back alignment and domain information

>gnl\|CDD\|216037 pfam00637, Clathrin, Region in Clathrin and VPS	Back alignment and domain information

>gnl\|CDD\|216037 pfam00637, Clathrin, Region in Clathrin and VPS	Back alignment and domain information

>gnl\|CDD\|216037 pfam00637, Clathrin, Region in Clathrin and VPS	Back alignment and domain information

>gnl\|CDD\|128594 smart00299, CLH, Clathrin heavy chain repeat homology	Back alignment and domain information

>gnl\|CDD\|216475 pfam01394, Clathrin_propel, Clathrin propeller repeat	Back alignment and domain information

>gnl\|CDD\|150065 pfam09268, Clathrin-link, Clathrin, heavy-chain linker	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1520
KOG0985		1666	consensus Vesicle coat protein clathrin, heavy cha	100.0
KOG0985		1666	consensus Vesicle coat protein clathrin, heavy cha	100.0
KOG3617		1416	consensus WD40 and TPR repeat-containing protein [	99.97
PF13838		66	Clathrin_H_link: Clathrin-H-link; PDB: 2XZG_A 3GD1	99.95
TIGR02917		899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.84
TIGR02917		899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.79
smart00299		140	CLH Clathrin heavy chain repeat homology.	99.7
KOG2066		846	consensus Vacuolar assembly/sorting protein VPS41	99.57
PLN03077		857	Protein ECB2; Provisional	99.54
smart00299		140	CLH Clathrin heavy chain repeat homology.	99.54
PF00637		143	Clathrin: Region in Clathrin and VPS; InterPro: IP	99.49
PRK11447		1157	cellulose synthase subunit BcsC; Provisional	99.49
PLN03077		857	Protein ECB2; Provisional	99.39
PLN03081		697	pentatricopeptide (PPR) repeat-containing protein;	99.28
PRK11447		1157	cellulose synthase subunit BcsC; Provisional	99.23
PRK09782		987	bacteriophage N4 receptor, outer membrane subunit;	99.06
PF00637		143	Clathrin: Region in Clathrin and VPS; InterPro: IP	99.04
PLN03081		697	pentatricopeptide (PPR) repeat-containing protein;	99.01
PLN03218		1060	maturation of RBCL 1; Provisional	99.0
TIGR00990		615	3a0801s09 mitochondrial precursor proteins import	98.94
TIGR00990		615	3a0801s09 mitochondrial precursor proteins import	98.86
PRK09782		987	bacteriophage N4 receptor, outer membrane subunit;	98.86
PLN03218		1060	maturation of RBCL 1; Provisional	98.79
KOG4626		966	consensus O-linked N-acetylglucosamine transferase	98.78
KOG2114		933	consensus Vacuolar assembly/sorting protein PEP5/V	98.74
PRK15174		656	Vi polysaccharide export protein VexE; Provisional	98.73
PRK15174		656	Vi polysaccharide export protein VexE; Provisional	98.63
PRK11788		389	tetratricopeptide repeat protein; Provisional	98.58
KOG3616		1636	consensus Selective LIM binding factor [Transcript	98.44
PF01394		37	Clathrin_propel: Clathrin propeller repeat; InterP	98.44
KOG3617		1416	consensus WD40 and TPR repeat-containing protein [	98.44
PRK10049		765	pgaA outer membrane protein PgaA; Provisional	98.43
KOG4626		966	consensus O-linked N-acetylglucosamine transferase	98.36
PRK11788		389	tetratricopeptide repeat protein; Provisional	98.32
KOG1840		508	consensus Kinesin light chain [Cytoskeleton]	98.3
cd00200		289	WD40 WD40 domain, found in a number of eukaryotic	98.19
PRK10049		765	pgaA outer membrane protein PgaA; Provisional	98.18
KOG3616		1636	consensus Selective LIM binding factor [Transcript	98.13
PF13429		280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.12
PF09268		24	Clathrin-link: Clathrin, heavy-chain linker; Inter	98.11
KOG2114		933	consensus Vacuolar assembly/sorting protein PEP5/V	98.09
KOG2066		846	consensus Vacuolar assembly/sorting protein VPS41	98.06
cd00200		289	WD40 WD40 domain, found in a number of eukaryotic	98.04
KOG2076		895	consensus RNA polymerase III transcription factor	98.03
KOG2041		1189	consensus WD40 repeat protein [General function pr	98.01
KOG2002		1018	consensus TPR-containing nuclear phosphoprotein th	97.81
KOG1155		559	consensus Anaphase-promoting complex (APC), Cdc23	97.78
TIGR02521		234	type_IV_pilW type IV pilus biogenesis/stability pr	97.76
PF04840		319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.76
TIGR02521		234	type_IV_pilW type IV pilus biogenesis/stability pr	97.75
KOG2041		1189	consensus WD40 repeat protein [General function pr	97.68
PRK10747		398	putative protoheme IX biogenesis protein; Provisio	97.68
PF14938		282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.48
KOG2063		877	consensus Vacuolar assembly/sorting proteins VPS39	97.45
KOG2003		840	consensus TPR repeat-containing protein [General f	97.45
KOG1840		508	consensus Kinesin light chain [Cytoskeleton]	97.43
PRK11189		296	lipoprotein NlpI; Provisional	97.4
KOG2076		895	consensus RNA polymerase III transcription factor	97.38
PF13429		280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	97.38
PF04053		443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.36
PRK11189		296	lipoprotein NlpI; Provisional	97.32
KOG0547		606	consensus Translocase of outer mitochondrial membr	97.31
PF14938		282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.28
KOG1173		611	consensus Anaphase-promoting complex (APC), Cdc16	97.28
KOG1126		638	consensus DNA-binding cell division cycle control	97.28
TIGR00540		409	hemY_coli hemY protein. This is an uncharacterized	97.26
PRK14720		906	transcript cleavage factor/unknown domain fusion p	97.25
KOG1920		1265	consensus IkappaB kinase complex, IKAP component [	97.19
PRK10747		398	putative protoheme IX biogenesis protein; Provisio	97.17
KOG1920		1265	consensus IkappaB kinase complex, IKAP component [	97.16
PRK14574		822	hmsH outer membrane protein; Provisional	97.16
PRK12370		553	invasion protein regulator; Provisional	97.15
KOG2063		877	consensus Vacuolar assembly/sorting proteins VPS39	97.13
TIGR03866		300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	97.07
KOG2002		1018	consensus TPR-containing nuclear phosphoprotein th	97.0
TIGR00540		409	hemY_coli hemY protein. This is an uncharacterized	96.99
KOG0624		504	consensus dsRNA-activated protein kinase inhibitor	96.83
KOG2047		835	consensus mRNA splicing factor [RNA processing and	96.78
KOG2003		840	consensus TPR repeat-containing protein [General f	96.62
TIGR03302		235	OM_YfiO outer membrane assembly lipoprotein YfiO.	96.62
KOG3785		557	consensus Uncharacterized conserved protein [Funct	96.58
KOG1126		638	consensus DNA-binding cell division cycle control	96.57
PRK12370		553	invasion protein regulator; Provisional	96.4
KOG0553		304	consensus TPR repeat-containing protein [General f	96.34
COG2956		389	Predicted N-acetylglucosaminyl transferase [Carboh	96.3
KOG1155		559	consensus Anaphase-promoting complex (APC), Cdc23	96.29
KOG1125		579	consensus TPR repeat-containing protein [General f	96.22
PF12569		517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	96.11
PRK14574		822	hmsH outer membrane protein; Provisional	96.02
KOG2034		911	consensus Vacuolar sorting protein PEP3/VPS18 [Int	96.02
KOG1129		478	consensus TPR repeat-containing protein [General f	96.0
TIGR03302		235	OM_YfiO outer membrane assembly lipoprotein YfiO.	95.99
KOG2055		514	consensus WD40 repeat protein [General function pr	95.92
KOG1173		611	consensus Anaphase-promoting complex (APC), Cdc16	95.83
COG5010		257	TadD Flp pilus assembly protein TadD, contains TPR	95.72
KOG1586		288	consensus Protein required for fusion of vesicles	95.66
TIGR03866		300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	95.66
KOG2376		652	consensus Signal recognition particle, subunit Srp	95.59
KOG1538		1081	consensus Uncharacterized conserved protein WDR10,	95.4
PLN03088		356	SGT1, suppressor of G2 allele of SKP1; Provisional	95.39
PTZ00421		493	coronin; Provisional	95.34
PF12569		517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	95.33
PRK11028		330	6-phosphogluconolactonase; Provisional	95.29
PF07035		167	Mic1: Colon cancer-associated protein Mic1-like; I	95.27
KOG1538		1081	consensus Uncharacterized conserved protein WDR10,	95.26
KOG0495		913	consensus HAT repeat protein [RNA processing and m	95.15
COG2956		389	Predicted N-acetylglucosaminyl transferase [Carboh	95.07
PRK15359		144	type III secretion system chaperone protein SscB;	95.04
cd05804		355	StaR_like StaR_like; a well-conserved protein foun	95.04
KOG0547		606	consensus Translocase of outer mitochondrial membr	94.96
PF10366		108	Vps39_1: Vacuolar sorting protein 39 domain 1; Int	94.84
TIGR02552		135	LcrH_SycD type III secretion low calcium response	94.63
PF09976		145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	94.62
KOG1130		639	consensus Predicted G-alpha GTPase interaction pro	94.59
PRK15179		694	Vi polysaccharide biosynthesis protein TviE; Provi	94.5
PLN00181		793	protein SPA1-RELATED; Provisional	94.49
KOG0276		794	consensus Vesicle coat complex COPI, beta' subunit	94.42
PRK15359		144	type III secretion system chaperone protein SscB;	94.39
TIGR02658		352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	94.19
PF00780		275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	94.11
PF12895		84	Apc3: Anaphase-promoting complex, cyclosome, subun	94.03
KOG0276		794	consensus Vesicle coat complex COPI, beta' subunit	93.99
KOG1174		564	consensus Anaphase-promoting complex (APC), subuni	93.94
PRK14720		906	transcript cleavage factor/unknown domain fusion p	93.87
PF04840		319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	93.82
PF12895		84	Apc3: Anaphase-promoting complex, cyclosome, subun	93.72
PLN00181		793	protein SPA1-RELATED; Provisional	93.6
PF13424		78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	93.4
KOG1585		308	consensus Protein required for fusion of vesicles	93.17
KOG2376		652	consensus Signal recognition particle, subunit Srp	93.06
PRK15363		157	pathogenicity island 2 chaperone protein SscA; Pro	93.04
cd05804		355	StaR_like StaR_like; a well-conserved protein foun	93.0
PF13414		69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	92.95
PF04053		443	Coatomer_WDAD: Coatomer WD associated region ; Int	92.91
COG3071		400	HemY Uncharacterized enzyme of heme biosynthesis [	92.9
PRK10370		198	formate-dependent nitrite reductase complex subuni	92.81
KOG0548		539	consensus Molecular co-chaperone STI1 [Posttransla	92.74
KOG1130		639	consensus Predicted G-alpha GTPase interaction pro	92.73
PRK02603		172	photosystem I assembly protein Ycf3; Provisional	92.62
CHL00033		168	ycf3 photosystem I assembly protein Ycf3	92.55
KOG3060		289	consensus Uncharacterized conserved protein [Funct	92.48
PRK03629		429	tolB translocation protein TolB; Provisional	92.47
PLN03088		356	SGT1, suppressor of G2 allele of SKP1; Provisional	92.36
PRK03629		429	tolB translocation protein TolB; Provisional	92.35
KOG2034		911	consensus Vacuolar sorting protein PEP3/VPS18 [Int	92.22
PRK15179		694	Vi polysaccharide biosynthesis protein TviE; Provi	92.18
KOG0543		397	consensus FKBP-type peptidyl-prolyl cis-trans isom	92.16
PF09295		395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	92.01
COG3071		400	HemY Uncharacterized enzyme of heme biosynthesis [	91.95
PF02897		414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	91.9
PF01394		37	Clathrin_propel: Clathrin propeller repeat; InterP	91.9
PRK04922		433	tolB translocation protein TolB; Provisional	91.73
KOG2047		835	consensus mRNA splicing factor [RNA processing and	91.71
KOG0319		775	consensus WD40-repeat-containing subunit of the 18	91.66
COG3063		250	PilF Tfp pilus assembly protein PilF [Cell motilit	91.64
PRK15363		157	pathogenicity island 2 chaperone protein SscA; Pro	91.61
PRK04922		433	tolB translocation protein TolB; Provisional	91.57
PRK00178		430	tolB translocation protein TolB; Provisional	91.53
KOG1128		777	consensus Uncharacterized conserved protein, conta	91.53
PTZ00421		493	coronin; Provisional	91.46
PRK04792		448	tolB translocation protein TolB; Provisional	91.42
PRK04841		903	transcriptional regulator MalT; Provisional	91.33
KOG0548		539	consensus Molecular co-chaperone STI1 [Posttransla	91.26
PF13414		69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	91.12
TIGR02800		417	propeller_TolB tol-pal system beta propeller repea	91.06
KOG4340		459	consensus Uncharacterized conserved protein [Funct	91.04
PTZ00420		568	coronin; Provisional	91.02
TIGR02552		135	LcrH_SycD type III secretion low calcium response	90.94
KOG0553		304	consensus TPR repeat-containing protein [General f	90.69
KOG2111		346	consensus Uncharacterized conserved protein, conta	90.68
PF13424		78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	90.62
cd00189		100	TPR Tetratricopeptide repeat domain; typically con	90.52
PRK02603		172	photosystem I assembly protein Ycf3; Provisional	90.52
PRK02889		427	tolB translocation protein TolB; Provisional	90.33
PRK11028		330	6-phosphogluconolactonase; Provisional	90.26
KOG2280		829	consensus Vacuolar assembly/sorting protein VPS16	90.24
PRK11138		394	outer membrane biogenesis protein BamB; Provisiona	89.89
COG4783		484	Putative Zn-dependent protease, contains TPR repea	89.82
PRK10370		198	formate-dependent nitrite reductase complex subuni	89.79
TIGR02795		119	tol_pal_ybgF tol-pal system protein YbgF. Members	89.58
PF10366		108	Vps39_1: Vacuolar sorting protein 39 domain 1; Int	89.43
KOG4340		459	consensus Uncharacterized conserved protein [Funct	89.37
KOG2280		829	consensus Vacuolar assembly/sorting protein VPS16	89.32
PRK05137		435	tolB translocation protein TolB; Provisional	89.25
PF10282		345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	89.08
KOG0291		893	consensus WD40-repeat-containing subunit of the 18	89.04
KOG3785		557	consensus Uncharacterized conserved protein [Funct	88.95
PF13432		65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	88.93
PRK10866		243	outer membrane biogenesis protein BamD; Provisiona	88.55
PRK01742		429	tolB translocation protein TolB; Provisional	88.42
cd00189		100	TPR Tetratricopeptide repeat domain; typically con	87.58
KOG1128		777	consensus Uncharacterized conserved protein, conta	87.55
PRK10803		263	tol-pal system protein YbgF; Provisional	87.23
KOG0293		519	consensus WD40 repeat-containing protein [Function	87.12
PF07035		167	Mic1: Colon cancer-associated protein Mic1-like; I	86.89
KOG1129		478	consensus TPR repeat-containing protein [General f	86.72
PF13360		238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	86.63
PF13525		203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	86.4
PLN02789		320	farnesyltranstransferase	86.29
PRK02889		427	tolB translocation protein TolB; Provisional	86.22
PF04097		613	Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9	86.1
COG3063		250	PilF Tfp pilus assembly protein PilF [Cell motilit	86.08
PF13432		65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	86.05
TIGR03300		377	assembly_YfgL outer membrane assembly lipoprotein	86.02
KOG4162		799	consensus Predicted calmodulin-binding protein [Si	85.94
PTZ00420		568	coronin; Provisional	85.86
KOG4532		344	consensus WD40-like repeat containing protein [Gen	85.79
PLN02789		320	farnesyltranstransferase	85.73
PF00515		34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	85.7
TIGR02800		417	propeller_TolB tol-pal system beta propeller repea	85.64
KOG1125		579	consensus TPR repeat-containing protein [General f	85.58
PF09976		145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	85.54
PF14559		68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	84.82
PF07719		34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	84.56
KOG2055		514	consensus WD40 repeat protein [General function pr	84.27
PF04733		290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	84.25
KOG3881		412	consensus Uncharacterized conserved protein [Funct	84.13
PRK00178		430	tolB translocation protein TolB; Provisional	83.44
PF14559		68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	83.37
COG5010		257	TadD Flp pilus assembly protein TadD, contains TPR	82.94
PF04733		290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	82.82
PF07569		219	Hira: TUP1-like enhancer of split; InterPro: IPR01	82.8
KOG0624		504	consensus dsRNA-activated protein kinase inhibitor	82.71
KOG0306		888	consensus WD40-repeat-containing subunit of the 18	82.67
CHL00033		168	ycf3 photosystem I assembly protein Ycf3	82.57
KOG0550		486	consensus Molecular chaperone (DnaJ superfamily) [	82.55
TIGR02795		119	tol_pal_ybgF tol-pal system protein YbgF. Members	81.87
KOG4162		799	consensus Predicted calmodulin-binding protein [Si	81.37
PF13525		203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	81.18
PF13281		374	DUF4071: Domain of unknown function (DUF4071)	81.08
KOG2110		391	consensus Uncharacterized conserved protein, conta	81.05
KOG4642		284	consensus Chaperone-dependent E3 ubiquitin protein	81.04
PRK04841		903	transcriptional regulator MalT; Provisional	81.0
KOG1156		700	consensus N-terminal acetyltransferase [Chromatin	80.27
PF02259		352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	80.09

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

Probab=100.00  E-value=0  Score=4366.97  Aligned_cols=1502  Identities=64%  Similarity=1.027  Sum_probs=1494.1

Q ss_pred             CCCCCceeeeecccCCCCCCCCcccccceeeecCeeEEEEecCCCC-eEEEEEcCCCCCccccccCcccccccCCcceee
Q 000428            3 AANAPISMKEVLTLPSVGINPQFITFTNVTMESDKYICVRETAPQN-SVVIIDMNQPMQPLRRPITADSALMNPNSRILA   81 (1520)
Q Consensus         3 ~~~~Pi~~~e~~~L~~lGi~~~~i~f~~~t~eSdk~icvre~~~~~-~v~Ivdl~~~~~~~r~pi~AdsAimnP~~~iiA   81 (1520)
                      ++.+||+|+||+||+|+||+|++|+|.|+||||||||||||+.|++ |||||||++|.+|+||||+||||||||+++|||
T Consensus         1 a~~lPi~f~E~lqL~~~GI~~~~~~F~~~TmESDk~icvRe~~~~~~qVvIiDm~d~~~piRRpisadSaIm~P~kkvia   80 (1666)
T KOG0985|consen    1 AQILPIRFQEHLQLQNLGINPQNIGFSNVTMESDKFICVREKVGGQNQVVIIDMADPVNPIRRPISADSAIMNPDKKVIA   80 (1666)
T ss_pred             CCCCCeeHHHHhcccccCcCccccccceeeeecCceEEEeccCCCcceEEEEEcCCCcccccCCCCCCchhhCchHHHHH
Confidence            3579999999999999999999999999999999999999999887 999999999999999999999999999999999


Q ss_pred             eeccCCCCCCCcEEEEehhhhccccccccCCceeEEEeccCCeEEEEecCcEEEEeccCCCCccchhhcccCCCCCeEEE
Q 000428           82 LKAQLPGTTQDHLQIFNIELKAKIKSHQMSEQVVFWKWISPKMLGVVTQTSVYHWSIEGDSEPVKMFDRTANLTNNQIIN  161 (1520)
Q Consensus        82 lra~~~~~~g~~lQiFnle~k~klks~~~~e~vvfWkWis~~~l~lVT~~aVyHW~i~~~~~P~k~f~R~~~L~~~qIi~  161 (1520)
                      |||      |++|||||+|+|+|+|+|+|+|+|+||||||++|||+||+|+||||+++|+|+|+||||||++|+||||||
T Consensus        81 lka------~~~lQIFniE~KsK~ksh~m~E~VifWkWIs~kti~lVT~tsV~hws~egds~PvkmfdRh~sL~gcQiIn  154 (1666)
T KOG0985|consen   81 LKA------GKTLQIFNIERKSKSKAHTMDEDVIFWKWISDKTIALVTATSVYHWSKEGDSAPVKMFDRHRSLNGCQIIN  154 (1666)
T ss_pred             Hhh------CCeEEEEehhhhhhhccCCCCCceEEEEecchhHHHHhhhhheeeecccccchHHHHHHhhhccccceEEE
Confidence            996      78999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeCCCCCeEEEEeccCCCCCCCccccceEEEeecccccccccchhhccceeeecCCCCCCceEEEEEEecCCCCcccce
Q 000428          162 YKCDPTEKWLVLIGIAPGSAERPQLVKGNMQLFSVDQQRSQALEAHAASFAQFKVPGNENPSVLISFATKSFNAGQVTSK  241 (1520)
Q Consensus       162 Y~~~~~~kW~~l~Gi~~~~~~~~~~i~G~mQLyS~er~~sQ~ieghaa~F~~~~~~g~~~~~~l~~fa~r~~~~~~~~~k  241 (1520)
                      |++|...+|++|+||+    +++++|+|+|||||++|++||+|||||++|+.++++|+..|+++|||++|+++|    ||
T Consensus       155 yk~~~~~eWl~LVGIs----~r~~rv~G~MQLyS~~rkvSQ~iegHaa~Fa~fk~egne~p~~lF~fa~r~~~~----Gk  226 (1666)
T KOG0985|consen  155 YKGNLNAEWLALVGIS----ARTNRVAGKMQLYSVDRKVSQPIEGHAASFAAFKDEGNEVPSCLFSFAVRKPTG----GK  226 (1666)
T ss_pred             eccccccCceeEEeee----cccchhheeeeeeeeccchhhhhHHHHHHHHHhcccCCCCceEEEEecCCCCCC----Ce
Confidence            9999999999999999    999999999999999999999999999999999999999999999999999998    89


Q ss_pred             EEEEecCCCC-CCCCcccccccccCCCCCCCCcceeEEeccccceEEEEeccceEEEEeccchhhhhhcccCCCceEEee
Q 000428          242 LHVIELGAQP-GKPSFTKKQADLFFPPDFADDFPVAMQISHKYGLIYVITKLGLLFVYDLETAAAVYRNRISPDPIFLTS  320 (1520)
Q Consensus       242 L~i~Ei~~~~-~~~~f~kk~~d~~fpp~~~~DFPv~mqvs~k~g~iyviTK~G~l~lyDl~tg~~i~~~rIs~~~iF~~~  320 (1520)
                      |||+|+|+++ |+++|+||++|+|||||+++||||+||||.|||+||+|||+||+|+||+|||+||||||||+++||+|+
T Consensus       227 LhiiEvg~~~tg~~~f~kk~vDvffppda~nDFPvamqvs~k~~vIyLiTKyG~ihlYdlEt~tciy~NRIs~dtIFvta  306 (1666)
T KOG0985|consen  227 LHIIEVGDPPTGNMPFLKKKVDVFFPPDAINDFPVAMQVSAKYGVIYLITKYGYIHLYDLETGTCIYRNRISADTIFVTA  306 (1666)
T ss_pred             eEEEecCCCccCCCcchhhhhhccCChhhccccchheeeccccCeEEEEeecchhhhhhhhhhhhhhhhhccccceeEec
Confidence            9999999987 666999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCcEEEEcCCCcEEEEEeecCccccchhcccCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcccCHHHHHHHHHcC
Q 000428          321 EASSLGGFYAINRRGQVLLATVNEATIVPFVSGQLNNLELAVNLAKRGNLPGAENLVVQRFQELFAQTKYKEAAELAAES  400 (1520)
Q Consensus       321 ~~~~~~Gi~~Vn~~GqVl~v~i~~~~ivpyi~~~l~n~~la~~la~r~~lpgad~l~~~~F~~l~~~g~y~~AA~~AA~s  400 (1520)
                      +++.++||++|||+|||++|+|++++|||||.++|+||+||+++|+|+||||||+||++|||+||++|+|++||++||+|
T Consensus       307 ~~~~s~Gi~~iNrKGQVLsv~v~e~~IVpyi~~~LqnpeLal~~A~R~nLaGAe~Lfv~rFneLfaqG~Y~eAAkvAAsS  386 (1666)
T KOG0985|consen  307 PHDSSSGIQGINRKGQVLSVLVNEQNIVPYITNVLQNPELALRLAVRANLAGAENLFVRRFNELFAQGEYEEAAKVAASS  386 (1666)
T ss_pred             ccccCcchhhhhhcceEEEEEecCcceehhhhccccChHHHHHhhhhcCCccHHHHHHHHHHHHHhCccHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHhcCCCCCCCCCcHHHHHHHHhhcCCCChhhhHHHHHHHHhhcchhhHHHHHhhcccccchhhhhhh
Q 000428          401 PQGLLRTPDTVAKFQSVPVQAGQTPPLLQYFGTLLTRGKLNAFESLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLV  480 (1520)
Q Consensus       401 P~g~LRt~~Ti~rfk~~~~~~Gq~~pLL~Yf~~ll~~g~ln~~eslEL~r~vl~qnr~~LlekWL~enkL~~Se~lGD~~  480 (1520)
                      |+||||||+||+|||++|++||||||||||||+||++|+||++||+|||||||+|||++|+||||+|+||+|||||||++
T Consensus       387 PrgILRt~~Ti~kFq~V~a~~Gq~sPLLqYFg~LLdqGkLNk~ETLEL~RpVL~Q~RkqLlekWl~EdKLeCSEELGDlV  466 (1666)
T KOG0985|consen  387 PRGILRTPGTINKFQSVPAQPGQPSPLLQYFGTLLDQGKLNKYETLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLV  466 (1666)
T ss_pred             chhhhcCHHHHHHHHcCCCCCCCCCcHHHHHHHHHhcccccHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHHhcCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccChhhHHHHHHhcCCCHHHHHHHHHhccHHHHHHHHHHhCCchhHHHHHHHHhhcCchhHHHHHHHHHhcCCCCCCCH
Q 000428          481 KTVDNDLALKIYIKARATPKVVAAFAERREFDKILIYSKQVGYTPDYLFLLQTILRTDPQGAVNFALMMSQMEGGCPVDY  560 (1520)
Q Consensus       481 ~~~D~~LA~~iY~r~~~~~KvI~~~~e~g~f~~~~~Y~~~~~~~~d~~~lL~~~~~~np~~~~~la~~l~~~e~~~~~dv  560 (1520)
                      +++|++||+++|.||+||.|||.|++|.|+|+||+.|++|+||||||+++|++++|+||+++.+||.+++|.++ |+.|+
T Consensus       467 K~~d~~lAL~iYlrAnvp~KVi~cfAE~Gqf~KiilY~kKvGyTPdymflLq~l~r~sPD~~~qFa~~l~Q~~~-~~~di  545 (1666)
T KOG0985|consen  467 KPYDTTLALSIYLRANVPAKVIQCFAETGQFKKIILYAKKVGYTPDYMFLLQQLKRSSPDQALQFAMMLVQDEE-PLADI  545 (1666)
T ss_pred             ccCCchHHHHHHHHcCCcHHHHHHHHHhcchhHHHHHHHHcCCCccHHHHHHHHHccChhHHHHHHHHhhccCC-CcccH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999876 89999


Q ss_pred             HHHHHHHHhCCcHHHHHHHHHHhhcCCCCCCchhhhHHHHhhhccCchhHHHHhhCCCCCCCChhHHHHHHHHhCcHHHH
Q 000428          561 NTITDLFLQRNLIREATAFLLDVLKPNLPEHGFLQTKVLEINLVTFPNVADAILANGMFSHYDRPRIAQLCEKAGLYMRA  640 (1520)
Q Consensus       561 ~~vv~~F~~~~l~~e~t~~Ll~~lk~n~~e~~~LQt~Lle~nl~~~p~Vad~Il~~~~l~~yD~~~IA~lCe~agL~e~A  640 (1520)
                      ++|+|+||+.|++|++|+||+|+||+|+|++|+|||||||+|++++|+|||+||+|+||+||||++||+|||+|||+|||
T Consensus       546 e~I~DlFme~N~iQq~TSFLLdaLK~~~Pd~g~LQTrLLE~NL~~aPqVADAILgN~mFtHyDra~IAqLCEKAGL~qra  625 (1666)
T KOG0985|consen  546 EQIVDLFMELNLIQQCTSFLLDALKLNSPDEGHLQTRLLEMNLVHAPQVADAILGNDMFTHYDRAEIAQLCEKAGLLQRA  625 (1666)
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHhcCCChhhhhHHHHHHHHHhccchHHHHHHHhccccccccHHHHHHHHHhcchHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCcchhHHhhccccCChhhHHHHhhcCChHhHHHHHHHHHHhhccchHHHHHHHHHHHHhhhhhHHHHHHHhhhc
Q 000428          641 LQHYTELPDIKRVIVNTHAIEPQSLVEFFGTLSREWALECMKDLLLVNLRGNLQIIVQTAKEYCEQLGVEACIKLFEQFK  720 (1520)
Q Consensus       641 le~Y~~~~dikR~~~~~~~~~~~~l~~~~~~l~~~~~~~~l~~~l~~n~~~nlq~vv~~a~~y~~~~g~~~li~~fe~~~  720 (1520)
                      ||||+|+.||||+++||+.++|+||+.|||+|+++||+|||++||.+|+|||+|+|||+|+|||+++|+++||++||+||
T Consensus       626 LehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fk  705 (1666)
T KOG0985|consen  626 LEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFK  705 (1666)
T ss_pred             HHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhHHHHHhhhcccCCCChhHHHHHHHHHHhCChhHHHHHhhcCCCCChHhHHHHHhhcCCCCCCCcceeccccCChhh
Q 000428          721 SYEGLYFFLGSYLSSSEDPDIHFKYIEAAAKTGQIKEVERVTRESNFYDPEKTKNFLMEAKLPDARPLINVCDRFGFVPD  800 (1520)
Q Consensus       721 ~~e~L~~yL~~~~~~~~dp~V~~kyi~A~~k~~q~~EvEr~~resn~yd~e~vk~~lk~~~l~d~~pli~vcdr~~~v~~  800 (1520)
                      |||||||||||+||+|+||+||||||+|+||+||++|||||||||||||||||||||||+||+||+|||+||||||||||
T Consensus       706 s~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhd  785 (1666)
T KOG0985|consen  706 SYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHD  785 (1666)
T ss_pred             cchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHhhcchhHHHHHHHhhhcCCCChhHHHHHHhhCCCChhHHHHHHHHhccCCCchhHHHHHHHhhhHHHHHHHHHHHh
Q 000428          801 LTHYLYTNNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPEDFIKGLILSVRSLLPVEPLVEECEKRNRLRLLTQFLEHLV  880 (1520)
Q Consensus       801 L~~yLy~~~~~~~Ie~Yv~~vnpa~~~~Vv~~lld~~~~E~~i~~LL~~v~~~~~~~eLv~~~E~R~rl~~L~~~LE~~l  880 (1520)
                      |++|||+|++++|||.|||+|||+|+|.|||+|+|+||+|++|++|+++|+|+.|++|||+|||||||||+|+||||+++
T Consensus       786 lvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i  865 (1666)
T KOG0985|consen  786 LVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLI  865 (1666)
T ss_pred             HHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCcchHHHHHHHHHHHhcCCChhhhhhcCCCCChHHHHHHHhhcCCceEEEEeecccchHHHhhhcccchHHHHHHHH
Q 000428          881 SEGSQDVHVHNALGKIIIDSNNNPEHFLTTNPYYDSRVVGKYCEKRDPTLAVVAYRRGQCDDELINVTNKNSLFKLQARY  960 (1520)
Q Consensus       881 ~eg~~d~~l~~alakiyid~~~~pE~fL~~n~~yd~~vVgk~Ce~~dp~la~l~y~~g~~d~~LI~v~~~n~~fk~~a~y  960 (1520)
                      ++|.+|+++||||||||||||+|||+||++|+||||++||||||||||+|||++|.+|+||.+||++||+|+|||.+|||
T Consensus       866 ~eG~~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRY  945 (1666)
T KOG0985|consen  866 QEGSQDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARY  945 (1666)
T ss_pred             hccCcchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHhcCcchHHHHHHHHHHhccCCCCCCchhHHHHHHHHHhCCCCHHHHHHHHHhhhcCCCccccchhhh
Q 000428          961 VVERMDADLWEKVLTPENEYRRQLIDQVVSTALPESKSPEQVSAAVKAFMTADLPHELIELLEKIVLQNSAFSGNFNLQN 1040 (1520)
Q Consensus       961 lvk~~~~~lw~~vl~~~n~~r~~lidqv~~~alpe~~~~~~vs~~Vkaf~~a~lp~eLi~lLekivl~~~~fs~N~~Lqn 1040 (1520)
                      ||+|+|++||.+||+++|+|||+|||||++||+||++|||+||.||||||++|||+|||||||||||+||.||+|.||||
T Consensus       946 lv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQn 1025 (1666)
T KOG0985|consen  946 LVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQN 1025 (1666)
T ss_pred             HHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhCchHHHHHHHHHhCCChHHHHHHHHHcCCHHHHHHHHHhcCCcHHHHHHHHHhhhhHHHHHHHHHHhCChh
Q 000428         1041 LLILTAIKADPSRVMDYVNRLDNFDGPAVGEVAVEAQLYEEAFAIFKKFNLNVQAVNVLLDNIRSIERAVEFAFRVEEDA 1120 (1520)
Q Consensus      1041 LlIlta~k~d~~kl~~yI~~ldnyd~~~IA~ia~e~~L~EEA~~LYkK~~~~~~Ai~vLi~~~~~~~~A~e~Aek~~~~e 1120 (1520)
                      ||||||||+|++|||+||+|+||||+++||.+|++++||||||.||+||+.+.+|++||++|++++|||.+||++|++|+
T Consensus      1026 LLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~ 1105 (1666)
T KOG0985|consen 1026 LLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPA 1105 (1666)
T ss_pred             hHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhccHHHHHHHHHhcCCcchHHHHHHHHHhcCChhHHHHHHHHHhhhcCCcchhHHHHHHHHhhCChhhH
Q 000428         1121 VWSQVAKAQLREGLVSDAIESFIRADDATQFLDVIRAAEDADVYHDLVRYLLMVRQKVKEPKVDSELIYAYAKIDRLGDI 1200 (1520)
Q Consensus      1121 Vw~~lgka~l~~~~v~eAI~~Yika~d~s~~~evi~~a~~a~~~e~Li~yL~m~r~~~~ep~id~~lv~~yAk~~~l~el 1200 (1520)
                      |||++|+|||++|+++|||+|||||+||++|.+||..|.++|+||+||+||+||||+.++|+||++|+++|||++|+.++
T Consensus      1106 vWsqlakAQL~~~~v~dAieSyikadDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~el 1185 (1666)
T KOG0985|consen 1106 VWSQLAKAQLQGGLVKDAIESYIKADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTEL 1185 (1666)
T ss_pred             HHHHHHHHHHhcCchHHHHHHHHhcCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCcCcchHHHHHhhhhccccHHHHHHHHHhhcCHHHHHHHHHHhcCHHHHHHHHHHhCChhhHHHHHHHHhcchhh
Q 000428         1201 EEFILMPNVANLQNVGDRLYDDTLYEAAKIIYAFISNWAKLAVTLVKLKQFQGAVDAARKANSAKTWKEVCFACVDAEEF 1280 (1520)
Q Consensus      1201 e~fl~~~N~a~v~~vgd~~~eeg~YeaAk~~y~~~~N~~kLA~~lv~L~~y~~Ave~AkKa~~~k~wk~v~~acv~~~e~ 1280 (1520)
                      |+||.++|+|+++.|||+||++|+|+|||.+|++++||++||+|+|+||+||+|||+|||||+++|||+||+||+|++||
T Consensus      1186 E~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EF 1265 (1666)
T KOG0985|consen 1186 EEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEF 1265 (1666)
T ss_pred             HHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHhhccccccccccHHHHHHHHHhcCCHHHHHHHHHhhcCccccccchhHHHHHHHhccChhhhHHHHHHHHHhhchH
Q 000428         1281 RLAQICGLNIIVQVDDLEEVSEYYQNRGYFNELISLMESGLGLERAHMGIFTELGVLYARYRYEKLMEHIKLFSTRLNIP 1360 (1520)
Q Consensus      1281 rLA~~~gl~li~~~d~l~elv~~Ye~~G~f~eLI~Lle~gl~lerAh~~~fTeLailyAky~pekLmehlk~y~~~iNi~ 1360 (1520)
                      ||||+|||+|++|+|+|++|++||+++|+|+|+|+|||.|+||||||||||||||||||||+|+|||||||+||+|+|||
T Consensus      1266 rlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYskykp~km~EHl~LFwsRvNip 1345 (1666)
T KOG0985|consen 1266 RLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKYKPEKMMEHLKLFWSRVNIP 1345 (1666)
T ss_pred             hHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcchH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcchHHHHHHHHhhccHHHHHHHHHhcCchhhcchhhHHHHHhhhhhHHHHHHHHHHHhhCcchHHHHHHHH
Q 000428         1361 KLIRACDEQQHWKELTYLYIQYDEFDNAATTIMNHSPEAWDHMQFKDVAVKVANVELYYKAVHFYLQEHPDLINDLLNVL 1440 (1520)
Q Consensus      1361 K~i~~ce~~~lW~E~vfLy~~~~e~d~A~~~mi~h~~~a~~h~~fk~ii~kvan~elyYkai~FyL~~~P~~l~dlL~~l 1440 (1520)
                      |+||+|+++|+|.|+||||.+|+|||||+.+||+||++||+|++||||++||+|+|+||||++|||++||.+++|||.+|
T Consensus      1346 KviRA~eqahlW~ElvfLY~~y~eyDNAa~tmm~h~teaw~~~~FKdii~kVaNvElyYkAi~FYl~~~P~llnDlL~vL 1425 (1666)
T KOG0985|consen 1346 KVIRAAEQAHLWSELVFLYDKYEEYDNAALTMMEHPTEAWDHGQFKDIITKVANVELYYKAIQFYLDFHPLLLNDLLTVL 1425 (1666)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhCChhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHhChHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCHHHHHHHHHhcCCccchHHHHHHHhhcChHHHHHHHHHHhhhhhhhHHHHHhHHhhhCCChHHHHHHhhcCCCC
Q 000428         1441 ALRVDHTRVVDIMRKAGHLLLVKPYMVAVQSNNVSAVNEALNEIYVEEEDYERLRESIDMHDNFDQIGLARRLRNMSFW 1519 (1520)
Q Consensus      1441 ~~rlD~~rvV~~~~k~~~ipLik~yL~~vq~~n~~~Vneal~~l~ieeed~~~Lr~sId~y~nfd~~~la~~le~h~l~ 1519 (1520)
                      +||+||+|+|++|+|++++|||||||.+||++|+++||+|+|+||||||||++||+|||.|||||+|+||||||||+|+
T Consensus      1426 ~pRlDh~r~v~~f~K~~~lpLikpyl~~vq~~Nn~avNealn~l~ieeEDy~~Lr~sid~~D~FD~i~LAq~lEkH~L~ 1504 (1666)
T KOG0985|consen 1426 SPRLDHTRTVSIFSKAGQLPLIKPYLRAVQSLNNKAVNEALNDLLIEEEDYQGLRDSIDAYDNFDNIGLAQRLEKHELV 1504 (1666)
T ss_pred             ccccCchHHHHHHHhcCCCcccHHHHHHHHhcchHHHHHHHHHHhhhHHHHHHHHHhhhhhcchhHHHHHHHhhhhhhH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999986

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]	Back alignment and domain information

>PF13838 Clathrin_H_link: Clathrin-H-link; PDB: 2XZG_A 3GD1_I 1BPO_C 1C9I_B 1C9L_A	Back alignment and domain information

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein	Back alignment and domain information

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein	Back alignment and domain information

>smart00299 CLH Clathrin heavy chain repeat homology	Back alignment and domain information

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PLN03077 Protein ECB2; Provisional	Back alignment and domain information

>smart00299 CLH Clathrin heavy chain repeat homology	Back alignment and domain information

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>PRK11447 cellulose synthase subunit BcsC; Provisional	Back alignment and domain information

>PLN03077 Protein ECB2; Provisional	Back alignment and domain information

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional	Back alignment and domain information

>PRK11447 cellulose synthase subunit BcsC; Provisional	Back alignment and domain information

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional	Back alignment and domain information

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional	Back alignment and domain information

>PLN03218 maturation of RBCL 1; Provisional	Back alignment and domain information

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)	Back alignment and domain information

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)	Back alignment and domain information

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional	Back alignment and domain information

>PLN03218 maturation of RBCL 1; Provisional	Back alignment and domain information

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]	Back alignment and domain information

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PRK15174 Vi polysaccharide export protein VexE; Provisional	Back alignment and domain information

>PRK15174 Vi polysaccharide export protein VexE; Provisional	Back alignment and domain information

>PRK11788 tetratricopeptide repeat protein; Provisional	Back alignment and domain information

>KOG3616 consensus Selective LIM binding factor [Transcription]	Back alignment and domain information

>PF01394 Clathrin_propel: Clathrin propeller repeat; InterPro: IPR022365 This entry represents the propeller repeat found in clathrin heavy chains	Back alignment and domain information

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]	Back alignment and domain information

>PRK10049 pgaA outer membrane protein PgaA; Provisional	Back alignment and domain information

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]	Back alignment and domain information

>PRK11788 tetratricopeptide repeat protein; Provisional	Back alignment and domain information

>KOG1840 consensus Kinesin light chain [Cytoskeleton]	Back alignment and domain information

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Back alignment and domain information

>PRK10049 pgaA outer membrane protein PgaA; Provisional	Back alignment and domain information

>KOG3616 consensus Selective LIM binding factor [Transcription]	Back alignment and domain information

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B	Back alignment and domain information

>PF09268 Clathrin-link: Clathrin, heavy-chain linker; InterPro: IPR015348 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

Back alignment and domain information

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]	Back alignment and domain information

>KOG2041 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]	Back alignment and domain information

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW	Back alignment and domain information

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex	Back alignment and domain information

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW	Back alignment and domain information

>KOG2041 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>PRK10747 putative protoheme IX biogenesis protein; Provisional	Back alignment and domain information

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A	Back alignment and domain information

>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]	Back alignment and domain information

>KOG1840 consensus Kinesin light chain [Cytoskeleton]	Back alignment and domain information

>PRK11189 lipoprotein NlpI; Provisional	Back alignment and domain information

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]	Back alignment and domain information

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B	Back alignment and domain information

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>PRK11189 lipoprotein NlpI; Provisional	Back alignment and domain information

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A	Back alignment and domain information

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>TIGR00540 hemY_coli hemY protein	Back alignment and domain information

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional	Back alignment and domain information

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]	Back alignment and domain information

>PRK10747 putative protoheme IX biogenesis protein; Provisional	Back alignment and domain information

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]	Back alignment and domain information

>PRK14574 hmsH outer membrane protein; Provisional	Back alignment and domain information

>PRK12370 invasion protein regulator; Provisional	Back alignment and domain information

>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein	Back alignment and domain information

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]	Back alignment and domain information

>TIGR00540 hemY_coli hemY protein	Back alignment and domain information

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]	Back alignment and domain information

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]	Back alignment and domain information

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]	Back alignment and domain information

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO	Back alignment and domain information

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PRK12370 invasion protein regulator; Provisional	Back alignment and domain information

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]	Back alignment and domain information

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]	Back alignment and domain information

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]	Back alignment and domain information

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala	Back alignment and domain information

>PRK14574 hmsH outer membrane protein; Provisional	Back alignment and domain information

>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]	Back alignment and domain information

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO	Back alignment and domain information

>KOG2055 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein	Back alignment and domain information

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]	Back alignment and domain information

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional	Back alignment and domain information

>PTZ00421 coronin; Provisional	Back alignment and domain information

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala	Back alignment and domain information

>PRK11028 6-phosphogluconolactonase; Provisional	Back alignment and domain information

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1	Back alignment and domain information

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]	Back alignment and domain information

>KOG0495 consensus HAT repeat protein [RNA processing and modification]	Back alignment and domain information

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]	Back alignment and domain information

>PRK15359 type III secretion system chaperone protein SscB; Provisional	Back alignment and domain information

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals	Back alignment and domain information

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1	Back alignment and domain information

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD	Back alignment and domain information

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function	Back alignment and domain information

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]	Back alignment and domain information

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional	Back alignment and domain information

>PLN00181 protein SPA1-RELATED; Provisional	Back alignment and domain information

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PRK15359 type III secretion system chaperone protein SscB; Provisional	Back alignment and domain information

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain	Back alignment and domain information

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase	Back alignment and domain information

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A	Back alignment and domain information

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional	Back alignment and domain information

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex	Back alignment and domain information

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A	Back alignment and domain information

>PLN00181 protein SPA1-RELATED; Provisional	Back alignment and domain information

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H	Back alignment and domain information

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional	Back alignment and domain information

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals	Back alignment and domain information

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A	Back alignment and domain information

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]	Back alignment and domain information

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional	Back alignment and domain information

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]	Back alignment and domain information

>PRK02603 photosystem I assembly protein Ycf3; Provisional	Back alignment and domain information

>CHL00033 ycf3 photosystem I assembly protein Ycf3	Back alignment and domain information

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PRK03629 tolB translocation protein TolB; Provisional	Back alignment and domain information

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional	Back alignment and domain information

>PRK03629 tolB translocation protein TolB; Provisional	Back alignment and domain information

>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional	Back alignment and domain information

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi	Back alignment and domain information

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]	Back alignment and domain information

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

>PF01394 Clathrin_propel: Clathrin propeller repeat; InterPro: IPR022365 This entry represents the propeller repeat found in clathrin heavy chains	Back alignment and domain information

>PRK04922 tolB translocation protein TolB; Provisional	Back alignment and domain information

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]	Back alignment and domain information

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]	Back alignment and domain information

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]	Back alignment and domain information

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional	Back alignment and domain information

>PRK04922 tolB translocation protein TolB; Provisional	Back alignment and domain information

>PRK00178 tolB translocation protein TolB; Provisional	Back alignment and domain information

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]	Back alignment and domain information

>PTZ00421 coronin; Provisional	Back alignment and domain information

>PRK04792 tolB translocation protein TolB; Provisional	Back alignment and domain information

>PRK04841 transcriptional regulator MalT; Provisional	Back alignment and domain information

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A	Back alignment and domain information

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB	Back alignment and domain information

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PTZ00420 coronin; Provisional	Back alignment and domain information

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD	Back alignment and domain information

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]	Back alignment and domain information

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]	Back alignment and domain information

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H	Back alignment and domain information

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Back alignment and domain information

>PRK02603 photosystem I assembly protein Ycf3; Provisional	Back alignment and domain information

>PRK02889 tolB translocation protein TolB; Provisional	Back alignment and domain information

>PRK11028 6-phosphogluconolactonase; Provisional	Back alignment and domain information

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PRK11138 outer membrane biogenesis protein BamB; Provisional	Back alignment and domain information

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]	Back alignment and domain information

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional	Back alignment and domain information

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF	Back alignment and domain information

>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1	Back alignment and domain information

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PRK05137 tolB translocation protein TolB; Provisional	Back alignment and domain information

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3	Back alignment and domain information

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]	Back alignment and domain information

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B	Back alignment and domain information

>PRK10866 outer membrane biogenesis protein BamD; Provisional	Back alignment and domain information

>PRK01742 tolB translocation protein TolB; Provisional	Back alignment and domain information

Back alignment and domain information

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]	Back alignment and domain information

>PRK10803 tol-pal system protein YbgF; Provisional	Back alignment and domain information

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]	Back alignment and domain information

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1	Back alignment and domain information

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]	Back alignment and domain information

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A	Back alignment and domain information

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A	Back alignment and domain information

>PLN02789 farnesyltranstransferase	Back alignment and domain information

>PRK02889 tolB translocation protein TolB; Provisional	Back alignment and domain information

>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex	Back alignment and domain information

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]	Back alignment and domain information

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B	Back alignment and domain information

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL	Back alignment and domain information

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]	Back alignment and domain information

>PTZ00420 coronin; Provisional	Back alignment and domain information

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]	Back alignment and domain information

>PLN02789 farnesyltranstransferase	Back alignment and domain information

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]	Back alignment and domain information

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB	Back alignment and domain information

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]	Back alignment and domain information

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function	Back alignment and domain information

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A	Back alignment and domain information

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]	Back alignment and domain information

>KOG2055 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PRK00178 tolB translocation protein TolB; Provisional	Back alignment and domain information

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A	Back alignment and domain information

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]	Back alignment and domain information

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin	Back alignment and domain information

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]	Back alignment and domain information

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]	Back alignment and domain information

>CHL00033 ycf3 photosystem I assembly protein Ycf3	Back alignment and domain information

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF	Back alignment and domain information

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]	Back alignment and domain information

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A	Back alignment and domain information

>PF13281 DUF4071: Domain of unknown function (DUF4071)	Back alignment and domain information

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]	Back alignment and domain information

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK04841 transcriptional regulator MalT; Provisional	Back alignment and domain information

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]	Back alignment and domain information

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases	Back alignment and domain information

Homologous Structure Templates