Citrus Sinensis ID: 000441

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------1370------1380------1390------1400------1410------1420------1430------1440------1450------1460------1470------1480------1490------1500------151
MQTIMIVLLEESEDIQEDLLVILLSALGRNKNDTARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRIEMKALEKILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILDQLKDANVWKILMNLLDSNTSFDQAFTGRDDLLKILGAKHRLYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKTHLPAVLQSLGCIAQTAMPVFETRESEIEEFIKSKILRCSNKIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRLSRQWDHKIPVDVFHLTLRTPEISFPQAKKLFLSKVHQYVKDRLLDAKYACAFLFGITESKSPEFEEEKQNLADIIQMHHQMKARQISVQSDANSFATYPEYIIPYLVHTFAHHSCPDIDECKDVKAFELVYCRLYFIVSMLIHKDEDVKSEASNKESISVIISIFRSIKCSEDIVDAAKSKNSHAICDLGLSITKRLSRMEDNSQGVFSSVSLPSTLYKPYEKKEGDDSLASERQTWLADESVLTHFESLKLETHEVVGSEIARHEALDDLEKDGNEVPLGKMIQQLKSQGAKGGKAKKKKSSPAEVKGTENDVDILQMVREINLDNLGVLNKFESSNGHKHFPSKQIKVDLENEEIKKRKATDVTSFPVPKRRRSLSAHGGFRTPKSNSKAPLRASGGGSHHAGVSSFQSIDMDDDISESEVKISTKKKKFTSNESDSFASRFQGSRSFSSKRKGKSADLGHDNEADEVGEADEGDLKNSDMLSKSPVGSAKKRKRRSIAGLAKCTTKNAGVNIEDLIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDDEDVEVLRLDKERWELLDNGRKPTKKSKSNSLKHASLIQVSSGKKNKLSGGARQNKKSMKDKGKRTPKKSLKDRPKFASKSYFSEDEDSEKTDVSDPKPTTVSKVLETNSGDSQGKRADMEDENLTDKEESDKEFKLISEERDVEDTEGNLNGEDESDEVDKMDSEEKPAEEVGSVPQDEKSDEEDKEEAESSKGSREEANEDGKSDSEGNEEINGDGSSPMNPEKSQNELPKPVDADDAEISDDEPLSKWKLKVGKSGSRRVG
cHHHHHHHHcccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccHHHHcHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccccHHHccccHHHHHHHHcccccccHHHHHHHHHccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHccHHHHHcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccc
cHHHHHHHHHHcccccHHHHHHHHHHHHcccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHcHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccHcHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHccHHHHHHHHcccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccHEccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcHHHHHccHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHcccccccccHHHEccccHHHHHHHHHccHHcccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccHHHHHHHHHHcHHHccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccEEccccccccHHHcccEEEEEEccccccccEEEEEEccccccEEEEEccccEEEEEEcccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccEEEccccccEEccccccccEcEcccccccccccccccccccccccccccccccccHcccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccHcccccccccHHEccccccccccccc
MQTIMIVLLEESEDIQEDLLVILLSALGRNKNDTARRLAMNVIEQCAGKLEAGIKQFLVSsmsgdsrpghshidyheviydvyrcspqilsgvvpyltgeLLTDQLDTRLKAVGLVGdlfavpgsanneqFHSVFSEFLKRLTDRIVAVRMSVLEHVKSclltdpsradaPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCclrnfngsinqnefewipgkilrclydkdfgsdtiesvlcgslfptgfsvkdRVRHWVRIFSGFDRIEMKALEKILEQKQRLQQEMQRYLSLRQmhqdgdapeIQKKILFCFRVmsrsfaepakAEENFLILDQLKDANVWKILMNLLdsntsfdqaftGRDDLLKILGAKHRLYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILArfsplllggTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKTHLPAVLQSLGciaqtampvfeTRESEIEEFIKSKILRCSNKIRNDTKACWDDRSELCLLKIYGIKTLVKsylpvkdahirpGIDDLLGILKSMLsygemsediesssvDKAHLRLASAKAVLRLSrqwdhkipvdvfhltlrtpeisfpQAKKLFLSKVHQYVKDRLLDAKYACAFLFgiteskspefeEEKQNLADIIQMHHQMKARQIsvqsdansfatypeyIIPYLVHtfahhscpdideckdvkAFELVYCRLYFIVSMLIhkdedvkseasnkESISVIISIFRSIKCSEDIVDAAKSKNSHAICDLGLSITKRLSrmednsqgvfssvslpstlykpyekkegddslASERQTWLADESVLTHFESLKLETHEVVGSEIARHEALDdlekdgnevplGKMIQQLKSqgakggkakkkksspaevkgtendVDILQMVREINLDNlgvlnkfessnghkhfpskqikvdleneeikkrkatdvtsfpvpkrrrslsahggfrtpksnskaplrasgggshhagvssfqsidmdddisesEVKISTkkkkftsnesdsfasrfqgsrsfsskrkgksadlghdneadevgeadegdlknsdmlskspvgsakkrkrrsiaglakcttknagvnieDLIGYRikvwwpmdkqfyegtiksydpikkkhvilyddedveVLRLDKERWELldngrkptkksksnslkhASLIQVSSgkknklsggarqnkksmkdkgkrtpkkslkdrpkfasksyfsededsektdvsdpkpttVSKVLEtnsgdsqgkradmedenltdkeesdKEFKLISEerdvedtegnlngedesdevdkmdseekpaeevgsvpqdeksdeedkeeaesskgsreeanedgksdsegneeingdgsspmnpeksqnelpkpvdaddaeisddeplskwklkvgksgsrrvg
MQTIMIVLLEESEDIQEDLLVILLSALGRNKNDTARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSclltdpsradAPQILTALCDRLLDFDENVRKQVVAVICDVAChalnsipvetvklvaerlrdksvlvkrytmerlADIFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLfptgfsvkdrvrHWVRIFSGFDRIEMKALEKILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILDQLKDANVWKILMNLLDSNTSFDQAFTGRDDLLKILGAKHRLYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALaaitkddglksLSVLYKRLVDMLEEKTHLPAVLQSLGCIAQTAMPVFETRESEIEEFIkskilrcsnkirndtkacwddrsELCLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRLSRQWDHKIPVDVFHLTLRTPEISFPQAKKLFLSKVHQYVKDRLLDAKYACAFLFGITESKSPEFEEEKQNLADIIQMHHQMKARQISVQSDANSFATYPEYIIPYLVHTFAHHSCPDIDECKDVKAFELVYCRLYFIVSMLIHKdedvkseasnkesISVIISIFRSIKCSEDIVDAaksknshaicDLGLSITKRLSRMEDNsqgvfssvslpstlykpyEKKEGDDSLASERQTWLADESVLTHFESLKLETHEVVGSEIARHEALDDLEKDGNEVPLGKMIQQLksqgakggkakkkksspaevkgtendvdiLQMVREINLDNLGVLNKFessnghkhfpskqikvdleneeikkrkatdvtsfpvpkrrrslsahggfrtpksnskAPLRASGGGSHHAGVSSFQSIDMDDDISESEVKistkkkkftsnesdsfasrfqgsrsfsskrkgksadlghdneadevgeadegdlknsdmlskspvgsakkrkrrsiaglakcttknagvniedLIGYRIKVWWPMDKQFYEGtiksydpikkKHVILYDDEDVEVLRLDKErwelldngrkptkksksnslkhasliqvssgkknklsggarqnkksmkdkgkrtpkkslkdrpkfasksyfsededsektdvsdpkpttvskvletnsgdsqgkradmedenltdkeesdkefkliseerdvedtegnlngedesdevdkmdseekpaeevgsvpqdeksdeedkeeaesskgsreeanedgksdsegneeingdgsspmnpeksqnELPKPVDADDaeisddeplskwklkvgksgsrrvg
MQTIMIVLLEESEDIQEDLLVILLSALGRNKNDTARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRIEMKALEKILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILDQLKDANVWKILMNLLDSNTSFDQAFTGRDDLLKILGAKHRLYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTeeelvnllkeeneIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKTHLPAVLQSLGCIAQTAMPVFETReseieefikskiLRCSNKIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRLSRQWDHKIPVDVFHLTLRTPEISFPQAKKLFLSKVHQYVKDRLLDAKYACAFLFGITESKSPEFEEEKQNLADIIQMHHQMKARQISVQSDANSFATYPEYIIPYLVHTFAHHSCPDIDECKDVKAFELVYCRLYFIVSMLIHKDEDVKSEASNKEsisviisifrsiKCSEDIVDAAKSKNSHAICDLGLSITKRLSRMEDNSQGVFSSVSLPSTLYKPYEKKEGDDSLASERQTWLADESVLTHFESLKLETHEVVGSEIARHEALDDLEKDGNEVPLGKMIqqlksqgakggkakkkksspaEVKGTENDVDILQMVREINLDNLGVLNKFESSNGHKHFPSKQIKVDLENEEIKKRKATDVTSFPVPKRRRSLSAHGGFRTPKSNSKAPLRasgggshhagvssFQsidmdddiseseVKISTKKKKFTSNESDsfasrfqgsrsfsskrkgksaDLGHdneadevgeadegdLKNSDMLSKSPVGSAKKRKRRSIAGLAKCTTKNAGVNIEDLIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDDEDVEVLRLDKERWELLDNGRKPTKKSKSNSLKHASLIQVSSGKKNKLSGGARQNKKSMKDKGKRTPKKSLKDRPKFASKSYFSEDEDSEKTDVSDPKPTTVSKVLETNSGDSQGKRADMEDENLTDKEESDKEFKLISEERDVEDTEGNLNGEDESDEVDKMDSEEKPAEEVGSVPQdeksdeedkeeaesskGSREEANEDGKSDSEGNEEINGDGSSPMNPEKSQNELPKPVDADDAEISDDEPLSKWKLKVGKSGSRRVG
***IMIVLLEESEDIQEDLLVILLSALGRNKNDTARRLAMNVIEQCAGKLEAGIKQFLVS**********SHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRIEMKALEKILE*************************EIQKKILFCFRVMSRSFAEPAKAEENFLILDQLKDANVWKILMNLLDSNTSFDQAFTGRDDLLKILGAKHRLYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTI****************RLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKTHLPAVLQSLGCIAQTAMPVFETRESEIEEFIKSKILRCSNKIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSMLSY*********************AKAVLRLSRQWDHKIPVDVFHLTLRTPEISFPQAKKLFLSKVHQYVKDRLLDAKYACAFLFGIT****************IIQ*********ISVQSDANSFATYPEYIIPYLVHTFAHHSCPDIDECKDVKAFELVYCRLYFIVSMLIHKD***********SISVIISIFRSIKCSEDIVDAAKSKNSHAICDLGLSITK****************************************TWLADESVLTHFESLKLETHEVVG******************************************************VDILQMVREINLDNLGVLNKF*********************************************************************************************************************************************************************IAGLAKCTTKNAGVNIEDLIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDDEDVEVLRLDKERWELL*******************************************************************************************************************************************************************************************************************************************************
MQTIMIVLLEESEDIQEDLLVILLSALGRNKNDTARRLAMNVIEQCAGKLEAGIKQFLVSSM***********DYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRIEMKALEKILEQKQRLQQEMQRYLSL****************LFCFRVMSRSFAEPAKAEENFLILDQLKDANVWKILMNLLDSNTSFDQAFTGRDDLLKILGAKHRLYDFLSTLSMKCSYLLFNKEHVKEILLE***************CMDILGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKTHLPAVLQSLGCIAQTAMPVFETRESEIEEFIKSKIL***************DRSELCLLKIYGIKTLVKSYLPVK*****PGIDDLLGILKSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRLSRQWDHKIPVDVFHLTLRTPEISFPQAKKLFLSKVHQYVKDRLLDAKYACAFLFGITESKSPEFEEEKQNLADIIQMHH******************YPEYIIPYLVHTFAHHSCPDIDECKDVKAFELVYCRLYFIVSMLIHKDEDVKSEASNKESISVIISIFRSIKCSE*****AKSKNSHAICDLGLSITKRL********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************
MQTIMIVLLEESEDIQEDLLVILLSALGRNKNDTARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRIEMKALEKILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILDQLKDANVWKILMNLLDSNTSFDQAFTGRDDLLKILGAKHRLYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKTHLPAVLQSLGCIAQTAMPVFETRESEIEEFIKSKILRCSNKIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSMLSYGEM*********DKAHLRLASAKAVLRLSRQWDHKIPVDVFHLTLRTPEISFPQAKKLFLSKVHQYVKDRLLDAKYACAFLFGITESK********QNLADIIQMHH**********SDANSFATYPEYIIPYLVHTFAHHSCPDIDECKDVKAFELVYCRLYFIVSMLIHKDE********KESISVIISIFRSIKCSEDIVDAAKSKNSHAICDLGLSITKRLSRMEDNSQGVFSSVSLPSTLYKPYE***********RQTWLADESVLTHFESLKLETHEVVGSEIARHEALDDLEKDGNEVPLGKMIQQL**********************TENDVDILQMVREINLDNLGVLNKFESSNGHKHFPSKQIKVDLENEEIKKRKATDVTSFPVPKRR******************************GVSSFQSIDMDDDISESEVKIS************************************HDNEADEVGEADEGDLKNSDMLS***************AGLAKCTTKNAGVNIEDLIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDDEDVEVLRLDKERWELLDNG************KHASLIQV************************************FASKS******************TTVSKVLETN*************************FKLISEERDVEDTEGNLNGED*********************************************************************************ADDAEISDDEPLSKWKLK**********
MQTIMIVLLEESEDIQEDLLVILLSALGRNKNDTARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRIEMKALEKILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILDQLKDANVWKILMNLLDSNTSFDQAFTGRDDLLKILGAKHRLYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKTHLPAVLQSLGCIAQTAMPVFETRESEIEEFIKSKILRCSN*****TKACWDDRSELCLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRLSRQWDHKIPVDVFHLTLRTPEISFPQAKKLFLSKVHQYVKDRLLDAKYACAFLFGITESKSPEFEEEKQNLADIIQMHHQMKARQISVQSDANSFATYPEYIIPYLVHTFAHHSCPDIDECKDVKAFELVYCRLYFIVSMLIHKDEDVKSEASNKESISVIISIFRSIKCSEDIVDAAKSKNSHAICDLGLSITKRLSRMEDNSQGVFSSVSLPSTLYKPYEKKEGDDSLASERQTWLADESVLTHFESLKLET*********************************************************NDVDILQMVREINLDNLG*******************************************************************************************************************************************************************************K******GVNIEDLIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDDEDVEVLRLDKERWELLDN**********************************************************************************************************************************************************************************************************************************E******************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MQTIMIVLLEESEDIQEDLLVILLSALGRNKNDTARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRIExxxxxxxxxxxxxxxxxxxxxxxxRQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILDQLKDANVWKILMNLLDSNTSFDQAFTGRDDLLKILGAKHRLYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKTHLPAVLQSLGCIAQTAMPVFETRESEIEEFIKSKILRCSNKIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRLSRQWDHKIPVDVFHLTLRTPEISFPQAKKLFLSKVHQYVKDRLLDAKYACAFLFGITESKSPEFEEEKQNLADIIQMHHQMKARQISVQSDANSFATYPEYIIPYLVHTFAHHSCPDIDECKDVKAFELVYCRLYFIVSMLIHKDEDVKSEASNKESISVIISIFRSIKCSEDIVDAAKSKNSHAICDLGLSITKRLSRMEDNSQGVFSSVSLPSTLYKPYEKKEGDDSLASERQTWLADESVLTHFESLKLETHEVVGSEIARHEALDDLEKDGNEVPLGKMIQQLKSQGAKGGKAKKKKSSPAEVKGTENDVDILQMVREINLDNLGVLNKFESSNGHKHFPSKQIKVDLENEEIKKRKATDVTSFPVPKRRRSLSAHGGFRTPKSNSKAPLRASGGGSHHAGVSSFQSIDMDDDISESEVKISTKKKKFTSNESDSFASRFQGSRSFSSKRKGKSADLGHDNEADEVGEADEGDLKNSDMLSKSPVGSAKKRKRRSIAGLAKCTTKNAGVNIEDLIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDDEDVEVLRLDKERWELLDNGRKPTKKSKSNSLKHASLIQVSSGKKNKLSGGARQNKKSMKDKGKRTPKKSLKDRPKFASKSYFSEDEDSEKTDVSDPKPTTVSKVLETNSGDSQGKRADMEDENLTDKEESDKEFKLISEERDVEDTEGNLNGEDESDEVDKMDSEEKPAEEVGSVPQDEKSDEEDKEEAESSKGSREEANEDGKSDSEGNEEINGDGSSPMNPEKSQNELPKPVDADDAEISDDEPLSKWKLKVGKSGSRRVG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1508 2.2.26 [Sep-21-2011]
Q9NTI51447 Sister chromatid cohesion yes no 0.570 0.594 0.228 8e-45
Q5F3U91412 Sister chromatid cohesion yes no 0.569 0.608 0.229 1e-44
Q4VA531446 Sister chromatid cohesion yes no 0.570 0.594 0.226 2e-44
Q6TRW41447 Sister chromatid cohesion yes no 0.570 0.594 0.226 8e-44
Q498H01448 Sister chromatid cohesion N/A no 0.563 0.587 0.224 9e-43
Q5U2411464 Sister chromatid cohesion N/A no 0.562 0.579 0.222 3e-42
A1L1F41320 Sister chromatid cohesion no no 0.591 0.675 0.224 6e-40
Q29RF71337 Sister chromatid cohesion no no 0.570 0.643 0.227 1e-39
A4L9P71333 Sister chromatid cohesion no no 0.570 0.645 0.226 2e-39
Q5F3V31330 Sister chromatid cohesion no no 0.570 0.647 0.225 2e-38
>sp|Q9NTI5|PDS5B_HUMAN Sister chromatid cohesion protein PDS5 homolog B OS=Homo sapiens GN=PDS5B PE=1 SV=1 Back     alignment and function desciption
 Score =  183 bits (465), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 211/923 (22%), Positives = 402/923 (43%), Gaps = 63/923 (6%)

Query: 1    MQTIMIVLLEESEDIQEDLLVILLSAL---GRNKNDTARRLAMNVIEQCAGKLEAGIKQF 57
            M  +M  ++ E + + ++LL  +L  L    +N N  A  LA  ++++ A  +E  I  F
Sbjct: 177  MVDLMSSIICEGDTVSQELLDTVLVNLVPAHKNLNKQAYDLAKALLKRTAQAIEPYITNF 236

Query: 58   LVSS-MSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLV 116
                 M G +          ++I ++Y     +L  V+P L  +L ++  + RL+ V L+
Sbjct: 237  FNQVLMLGKTSISDLSEHVFDLILELYNIDSHLLLSVLPQLEFKLKSNDNEERLQVVKLL 296

Query: 117  GDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTA 176
              +F    S    Q   ++  +L R  D  V +R+  ++    CL+  P  A    +   
Sbjct: 297  AKMFGAKDSELASQNKPLWQCYLGRFNDIHVPIRLECVKFASHCLMNHPDLAK--DLTEY 354

Query: 177  LCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLAD 236
            L  R  D +E +R  V+  I   A   +  +    +  V ER  DK   V++  M  LA 
Sbjct: 355  LKVRSHDPEEAIRHDVIVSIVTAAKKDILLVNDHLLNFVRERTLDKRWRVRKEAMMGLAQ 414

Query: 237  IFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFGSDT-IESVLCGSLFPTGFSVKDRV 295
            I++   L++  G     +  WI  K+L   Y         +E +    + P      +R+
Sbjct: 415  IYKKYALQSAAGKDAAKQIAWIKDKLLHIYYQNSIDDRLLVERIFAQYMVPHNLETTERM 474

Query: 296  RHWVRIFSGFDRIEMKALEKILEQKQRLQQEMQRYLSL-RQMHQDGDAPEIQKKILFCFR 354
            +    +++  D   +KAL ++ + +  L+ +++  L L +Q   D     I  K++    
Sbjct: 475  KCLYYLYATLDLNAVKALNEMWKCQNLLRHQVKDLLDLIKQPKTDASVKAIFSKVM---- 530

Query: 355  VMSRSFAEPAKAEENFLILDQL--KDANVWKILMNLLDSNTSFDQAFTGRDDLLKILG-A 411
            V++R+  +P KA++      Q+   D  + K L  L+    S  QA     ++ K LG  
Sbjct: 531  VITRNLPDPGKAQDFMKKFTQVLEDDEKIRKQLEVLVSPTCSCKQAEGCVREITKKLGNP 590

Query: 412  KHRLYDFLSTLSM---KCSYLLFNKEHVKEILLEVAAQ---------KSSANAQFMQSCM 459
            K     FL  +     + + +  + E +  ++ +V            +     Q +++ +
Sbjct: 591  KQPTNPFLEMIKFLLERIAPVHIDTESISALIKQVNKSIDGTADDEDEGVPTDQAIRAGL 650

Query: 460  DILGILARFSPLLLGGTE--EELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSV 517
            ++L +L+   P+     E  E L+  LK ++E + E  L +    G  I E      S++
Sbjct: 651  ELLKVLSFTHPISFHSAETFESLLACLKMDDEKVAEAALQIFKNTGSKIEEDFPHIRSAL 710

Query: 518  DLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKT--HLPAVLQS 575
              +L     +G  RQAKYA+H + AI      +  + +++ L   L+     HL   L +
Sbjct: 711  LPVLHHKSKKGPPRQAKYAIHCIHAIFSSKETQ-FAQIFEPLHKSLDPSNLEHLITPLVT 769

Query: 576  LGCIAQTAMPVFETR-ESEIEEFIKSKILRCSNKIRNDTKACW---DDRSELCLLKIYGI 631
            +G IA  A   F    +S +  FI   +L         T   W   ++ S   ++KI  I
Sbjct: 770  IGHIALLAPDQFAAPLKSLVATFIVKDLLMNDRLPGKKTTKLWVPDEEVSPETMVKIQAI 829

Query: 632  KTLVKSYLPVKDAHIRPGIDDLLGILKSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRL 691
            K +V+  L +K+ H + G   L  +   + S G+++E  + S  D + LRLA+  A+++L
Sbjct: 830  KMMVRWLLGMKNNHSKSGTSTLRLLTTILHSDGDLTEQGKISKPDMSRLRLAAGSAIVKL 889

Query: 692  SRQ--WDHKIPVDVFHLTLRTPEISFPQAKKLFLSKVHQYVKDRLLDAKYA--CAFLFGI 747
            +++  +   I ++ + L          Q +++F  K+H+ +    L  +Y   CA     
Sbjct: 890  AQEPCYHEIITLEQYQLCALAINDECYQVRQVFAQKLHKGLSRLRLPLEYMAICALC--- 946

Query: 748  TESKSPEFEEE---KQNLADIIQMHHQMKARQISVQSDANSFATYPEYIIPYLVHTFAHH 804
              +K P  E     +Q L   I +  +   +  +V     S    PEY++PY +H  AH 
Sbjct: 947  --AKDPVKERRAHARQCLVKNINVRREYLKQHAAVSEKLLSL--LPEYVVPYTIHLLAHD 1002

Query: 805  SCPDIDECKDVKAFELVYCRLYFIVSMLIHKDEDVKSEASNKESISVIISIFRSIKCSED 864
              PD  + +D++  + V   L+F++ +L+ K+E+         S + I  +  +IK ++D
Sbjct: 1003 --PDYVKVQDIEQLKDVKECLWFVLEILMAKNEN--------NSHAFIRKMVENIKQTKD 1052

Query: 865  IV---DAAKSKNSHAICDLGLSI 884
                 DA  ++  + +CD+ ++I
Sbjct: 1053 AQGPDDAKMNEKLYTVCDVAMNI 1075
Regulator of sister chromatid cohesion in mitosis which may stabilize cohesin complex association with chromatin. May couple sister chromatid cohesion during mitosis to DNA replication. Cohesion ensures that chromosome partitioning is accurate in both meiotic and mitotic cells and plays an important role in DNA repair. Plays a role in androgen-induced proliferative arrest in prostate cells.
Homo sapiens (taxid: 9606)
>sp|Q5F3U9|PDS5B_CHICK Sister chromatid cohesion protein PDS5 homolog B OS=Gallus gallus GN=PDS5B PE=2 SV=3 Back     alignment and function description
>sp|Q4VA53|PDS5B_MOUSE Sister chromatid cohesion protein PDS5 homolog B OS=Mus musculus GN=Pds5b PE=1 SV=1 Back     alignment and function description
>sp|Q6TRW4|PDS5B_RAT Sister chromatid cohesion protein PDS5 homolog B OS=Rattus norvegicus GN=Pds5b PE=2 SV=2 Back     alignment and function description
>sp|Q498H0|PD5BA_XENLA Sister chromatid cohesion protein PDS5 homolog B-A OS=Xenopus laevis GN=pds5b-a PE=1 SV=1 Back     alignment and function description
>sp|Q5U241|PD5BB_XENLA Sister chromatid cohesion protein PDS5 homolog B-B OS=Xenopus laevis GN=pds5b-b PE=2 SV=2 Back     alignment and function description
>sp|A1L1F4|PDS5A_DANRE Sister chromatid cohesion protein PDS5 homolog A OS=Danio rerio GN=pds5a PE=2 SV=1 Back     alignment and function description
>sp|Q29RF7|PDS5A_HUMAN Sister chromatid cohesion protein PDS5 homolog A OS=Homo sapiens GN=PDS5A PE=1 SV=1 Back     alignment and function description
>sp|A4L9P7|PDS5A_RAT Sister chromatid cohesion protein PDS5 homolog A OS=Rattus norvegicus GN=Pds5a PE=2 SV=1 Back     alignment and function description
>sp|Q5F3V3|PDS5A_CHICK Sister chromatid cohesion protein PDS5 homolog A OS=Gallus gallus GN=PDS5A PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1508
147777785 1922 hypothetical protein VITISV_030148 [Viti 0.969 0.760 0.648 0.0
255585406 1735 androgen induced inhibitor of proliferat 0.960 0.834 0.626 0.0
356522079 1641 PREDICTED: sister chromatid cohesion pro 0.968 0.889 0.621 0.0
356564452 1642 PREDICTED: sister chromatid cohesion pro 0.968 0.889 0.615 0.0
2241394501417 predicted protein [Populus trichocarpa] 0.822 0.875 0.701 0.0
449443672 1692 PREDICTED: sister chromatid cohesion pro 0.885 0.789 0.637 0.0
356557993 1656 PREDICTED: sister chromatid cohesion pro 0.969 0.882 0.594 0.0
2240895651411 predicted protein [Populus trichocarpa] 0.773 0.826 0.681 0.0
356532370 1648 PREDICTED: sister chromatid cohesion pro 0.966 0.884 0.590 0.0
1865301581607 sister chromatid cohesion protein PDS5 [ 0.940 0.883 0.573 0.0
>gi|147777785|emb|CAN75734.1| hypothetical protein VITISV_030148 [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1902 bits (4926), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 991/1528 (64%), Positives = 1192/1528 (78%), Gaps = 66/1528 (4%)

Query: 1    MQTIMIVLLEESEDIQEDLLVILLSALGRNKNDT---ARRLAMNVIEQCAGKLEAGIKQF 57
            MQTIM+VLLEESED++EDLL  +LS LGRNK+D    ARRLAMNVIE CA KLE GIKQF
Sbjct: 226  MQTIMVVLLEESEDVREDLLFSILSILGRNKSDVTTAARRLAMNVIEHCAAKLEPGIKQF 285

Query: 58   LVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVG 117
            LVSS+SGD+R  +S IDYHEVIYD+YRC+PQILSGV PYLTGELLTD LDTRLKAV LVG
Sbjct: 286  LVSSISGDNRSMNSEIDYHEVIYDIYRCAPQILSGVTPYLTGELLTDNLDTRLKAVKLVG 345

Query: 118  DLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTAL 177
            DLFA+PG A +E F  +FSEFLKRL DR+V VRMSVLEHVKSCLL++PSRA+APQI++AL
Sbjct: 346  DLFALPGLAISEAFQPIFSEFLKRLADRVVGVRMSVLEHVKSCLLSNPSRAEAPQIISAL 405

Query: 178  CDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADI 237
            CDRLLD+DENVRKQVVAVICDVACH+L+SIPVET KLVAERLRDKSVLVK+YT+ERLA+I
Sbjct: 406  CDRLLDYDENVRKQVVAVICDVACHSLSSIPVETXKLVAERLRDKSVLVKKYTLERLAEI 465

Query: 238  FRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRH 297
            +   CLR  +GS+N +EF+WIPGKILRC YDKDF SDTIESVLC +LFPT FS+KD+V+H
Sbjct: 466  YNLYCLRCCDGSLNPSEFDWIPGKILRCFYDKDFRSDTIESVLCETLFPTEFSIKDKVKH 525

Query: 298  WVRIFSGFDRIEMKALEKILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMS 357
            WVR+FSGFD++E+KALEKILEQKQRLQQEMQRYLSL+QMHQDG+ PEIQKK+ +C R+MS
Sbjct: 526  WVRVFSGFDKVEVKALEKILEQKQRLQQEMQRYLSLKQMHQDGEGPEIQKKVTYCLRIMS 585

Query: 358  RSFAEPAKAEENFLILDQLKDANVWKILMNLLDSNTSFDQAFTGRDDLLKILGAKHRLYD 417
            R FA+PAKAEENF ILDQLKD N+WKIL +L+D  TSF QA + RDDLL+ILG KHRLYD
Sbjct: 586  RLFADPAKAEENFQILDQLKDVNIWKILSSLIDPKTSFHQACSSRDDLLRILGEKHRLYD 645

Query: 418  FLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTE 477
            FL TLS+KCSYLLFNKEHVKE LLE A QKSS N Q++QSCM++L +LARFSPLLL G E
Sbjct: 646  FLGTLSLKCSYLLFNKEHVKEFLLEAAIQKSSGNTQYIQSCMNVLVVLARFSPLLLSGAE 705

Query: 478  EELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAV 537
            E+LV+LLK++NEIIKEG+LH+LAKAGGTIREQLA TSSSVDL+LERLCLEGSRRQAKYAV
Sbjct: 706  EDLVHLLKDDNEIIKEGVLHILAKAGGTIREQLAVTSSSVDLILERLCLEGSRRQAKYAV 765

Query: 538  HALAAITKDDGLKSLSVLYKRLVDMLEEKTHLPAVLQSLGCIAQTAMPVFETRESEIEEF 597
            HALAAITKDDGLKSLSVLYKRLVDML++KTHLPAVLQSLGCIAQTAMPVFETRESEIE F
Sbjct: 766  HALAAITKDDGLKSLSVLYKRLVDMLDKKTHLPAVLQSLGCIAQTAMPVFETRESEIEGF 825

Query: 598  IKSKILRCSNKIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGIL 657
            IK +IL+CS+                    I+GIKT+VKSYLPVKDAH+R GIDDLL IL
Sbjct: 826  IKCEILKCSS--------------------IFGIKTMVKSYLPVKDAHLRLGIDDLLEIL 865

Query: 658  KSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRLSRQWDHKIPVDVFHLTLRTPEISFPQ 717
            K++L +GE+S+DIESS+VDKAHLRLA+AKA+LRL+R WDHKIPV VFHLTLRT E SFPQ
Sbjct: 866  KNILLFGEISKDIESSAVDKAHLRLAAAKAILRLARHWDHKIPVGVFHLTLRTSESSFPQ 925

Query: 718  AKKLFLSKVHQYVKDRLLDAKYACAFLFGITESKSPEFEEEKQNLADIIQMHHQMKARQI 777
            AKKLFLSKVHQY+KDRLLDAKYACAF F I  S+  EFEE+K NL DIIQM+HQ KARQ+
Sbjct: 926  AKKLFLSKVHQYIKDRLLDAKYACAFSFNIVGSQPSEFEEDKHNLGDIIQMYHQAKARQL 985

Query: 778  SVQSDANSFATYPEYIIPYLVHTFAHHSCPDIDECKDVKAFELVYCRLYFIVSMLIHKDE 837
            S QSDA+S A YPE+I+PYLVH  AHHSCPDIDECKDVKAFE +Y +L+  +SML+H DE
Sbjct: 986  STQSDASSLA-YPEFILPYLVHALAHHSCPDIDECKDVKAFEPIYWKLHIFLSMLVHGDE 1044

Query: 838  DVKSEAS---NKESISVIISIFRSIKCSEDIVDAAKSKNSHAICDLGLSITKRLSRMEDN 894
            D K+EA     KE IS IISIF+SIK SEDIVDAAKSKNSHA+CDLGLSI KRL + +D+
Sbjct: 1045 DTKAEAGADKEKEGISAIISIFQSIKLSEDIVDAAKSKNSHALCDLGLSIIKRLVQKQDD 1104

Query: 895  SQGVFSSVSLPSTLYKPYEKKEGDDSLASERQTWLADESVLTHFESLKLETHEVVGSEIA 954
             QG+ SS++LP  LYK  EKKEGDDS+ASE QTWLADE VLTHFESLKLET+ +V  E  
Sbjct: 1105 VQGLTSSITLPPILYKLCEKKEGDDSVASEGQTWLADEXVLTHFESLKLETNGMVDEE-- 1162

Query: 955  RHEALDDLEKDGNEVPLGKMIQQLKSQGAKGGKAKKKKSSPAEVKGTENDVDILQMVREI 1014
                ++B ++DGNE+PLGKMI++LKS+G K  K K KKSSPA+ K  ENDVDIL+MVREI
Sbjct: 1163 --GVINBNDRDGNELPLGKMIKRLKSRGTKSRKVKNKKSSPAKKKHAENDVDILKMVREI 1220

Query: 1015 NLDNLGVLNKFESSNGHKHFPSKQIKVDLENEEIKKRKATDVTSFPVPKRRRSLSAHGGF 1074
            N D +G+ +KFESSNGH++   ++ K+  ++E+ K+R++T+VT   VPKRRRS SA    
Sbjct: 1221 NFDAMGMSSKFESSNGHEYSSHRKSKMGQKHEKKKRRRSTEVTPVTVPKRRRSSSAKSSL 1280

Query: 1075 RTPKSNSKAPLRASGGGSHHAGVSSFQSIDMDDDI-SESEVKISTKKKKFTSNESDSFAS 1133
              P+S SK  +RA     H AGVSSFQS DMD ++ ++SE K+S  K      ESD   S
Sbjct: 1281 --PRSASKGSVRALRDNLHQAGVSSFQSTDMDSEVHTDSEDKVSALKNIGEPAESDLLVS 1338

Query: 1134 RFQGSRSFSSKRKGKSADLGHDNEADEVGEADEGDLKNSDMLS-----------KSPVGS 1182
             F+ + +F SKRKGK +D G ++EA  VGE  + DL+  ++             KSP GS
Sbjct: 1339 CFRRNSNFLSKRKGKGSDKGDNDEARIVGEDXDHDLRKPNVPMETDKIHTASNVKSPTGS 1398

Query: 1183 AKKRKRRSIAGLAKCTTKNAGVNIEDLIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVIL 1242
             KKRKRRSIAGLAK T+K    +  DLI  RIKVWWPMDKQFYEG +KSYDP  +KHV+L
Sbjct: 1399 TKKRKRRSIAGLAKSTSKEGRSHAADLIDCRIKVWWPMDKQFYEGXVKSYDPKARKHVVL 1458

Query: 1243 YDDEDVEVLRLDKERWELLDNGRKPTKKSKSNSLKHASLIQVSSGKKNKLSGGARQNKKS 1302
            YDD DVEVLRL +ERWEL++N  KP K  K NS K      VS+ +KNK   G++QNKK 
Sbjct: 1459 YDDGDVEVLRLARERWELVENVAKPAK--KLNSSKTPPSKGVSADQKNKFLNGSQQNKKP 1516

Query: 1303 MKD-----KGKRTPKKSLKDRPKFA----SKSYFSEDEDSEKTDVSDPKPTTVSKVLETN 1353
            +K      +GKRTP+K+LK   K      + + F E E    +DVS+P+P  +SKV + N
Sbjct: 1517 IKSSSSKVRGKRTPRKNLKHVEKAGLESNTATEFCEVESRGSSDVSNPEPNAMSKVEDMN 1576

Query: 1354 SGDSQGKRADMEDENLTDKEESDKEFKLISEERDVEDTEGNLNGEDESDEVDKMDSEEKP 1413
            SGDS+ K  +  ++ LT  EESDKE K +SE + VED E   +  +ES++ +K  SE +P
Sbjct: 1577 SGDSEEKLNERSEKGLTGGEESDKEEKSVSEGKQVEDKEKRPSDTEESEKEEKPYSEGRP 1636

Query: 1414 AEEVGSVPQDEK---------SDEEDKEEAESSKGSREEANEDGKSDSEGNEEINGDGSS 1464
             E+   + QD +         S+E + EE++    S EEAN++ +SDSE  +  N + S+
Sbjct: 1637 VEDKEGICQDAQESPEKKESYSEEREPEESKRDSPSGEEANKEEQSDSEETQAENLE-SN 1695

Query: 1465 PMNPEKSQNELPKPVDADDAEISDDEPL 1492
            P + +KS  +   P + +DA+ SDDEPL
Sbjct: 1696 PTDXDKSSKKTSDPSNTEDAKNSDDEPL 1723

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255585406|ref|XP_002533398.1| androgen induced inhibitor of proliferation (as3) / pds5, putative [Ricinus communis] gi|223526757|gb|EEF28984.1| androgen induced inhibitor of proliferation (as3) / pds5, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356522079|ref|XP_003529677.1| PREDICTED: sister chromatid cohesion protein PDS5 homolog B-like [Glycine max] Back     alignment and taxonomy information
>gi|356564452|ref|XP_003550468.1| PREDICTED: sister chromatid cohesion protein PDS5 homolog B-like [Glycine max] Back     alignment and taxonomy information
>gi|224139450|ref|XP_002323118.1| predicted protein [Populus trichocarpa] gi|222867748|gb|EEF04879.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449443672|ref|XP_004139601.1| PREDICTED: sister chromatid cohesion protein PDS5 homolog B-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356557993|ref|XP_003547294.1| PREDICTED: sister chromatid cohesion protein PDS5 homolog B-like [Glycine max] Back     alignment and taxonomy information
>gi|224089565|ref|XP_002308759.1| predicted protein [Populus trichocarpa] gi|222854735|gb|EEE92282.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356532370|ref|XP_003534746.1| PREDICTED: sister chromatid cohesion protein PDS5 homolog B-like [Glycine max] Back     alignment and taxonomy information
>gi|186530158|ref|NP_001119390.1| sister chromatid cohesion protein PDS5 [Arabidopsis thaliana] gi|332008170|gb|AED95553.1| sister chromatid cohesion protein PDS5 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1508
TAIR|locus:21690581607 AT5G47690 [Arabidopsis thalian 0.720 0.675 0.630 0.0
RGD|13070941333 Pds5a "PDS5, regulator of cohe 0.383 0.433 0.221 4.7e-41
UNIPROTKB|Q29RF71337 PDS5A "Sister chromatid cohesi 0.383 0.432 0.221 2e-40
UNIPROTKB|E2R7R41337 PDS5A "Uncharacterized protein 0.383 0.432 0.221 1.8e-39
UNIPROTKB|F1NIQ31330 PDS5A "Sister chromatid cohesi 0.383 0.435 0.216 3.3e-38
UNIPROTKB|Q5F3V31330 PDS5A "Sister chromatid cohesi 0.383 0.435 0.216 3.3e-38
UNIPROTKB|Q4QXM31323 pds5a-a "Sister chromatid cohe 0.273 0.311 0.235 7.9e-37
ZFIN|ZDB-GENE-040426-16121321 pds5a "PDS5, regulator of cohe 0.257 0.293 0.226 8e-37
UNIPROTKB|I3LU951291 PDS5A "Uncharacterized protein 0.272 0.318 0.237 1.5e-36
UNIPROTKB|Q4KLU71323 pds5a-b "Sister chromatid cohe 0.273 0.311 0.235 1.6e-36
TAIR|locus:2169058 AT5G47690 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 3522 (1244.9 bits), Expect = 0., Sum P(2) = 0.
 Identities = 690/1094 (63%), Positives = 841/1094 (76%)

Query:     1 MQTIMIVLLEESEDIQEDLLVILLSALGRNKNDT---ARRLAMNVIEQCAGKLEAGIKQF 57
             MQ IMIVLLEESED+QE LL+ILLS LGRN++D    ARRLAM VIE CA K+E+ IKQF
Sbjct:   171 MQNIMIVLLEESEDVQEHLLLILLSKLGRNRSDVRDAARRLAMKVIEHCAPKVESDIKQF 230

Query:    58 LVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVG 117
             L+SSMSGDSR   S IDYHEVIYD+YRC+PQ LSGV PYLTGELL D+L+TRLK VGLVG
Sbjct:   231 LISSMSGDSRFSSSQIDYHEVIYDLYRCAPQALSGVAPYLTGELLADKLETRLKVVGLVG 290

Query:   118 DLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTAL 177
             +LF++PG   +E+F S+F EFLKRLTDR+V VRM++L+H+K CLL+DP RA+A QI++AL
Sbjct:   291 ELFSLPGRVISEEFDSIFLEFLKRLTDRVVEVRMAILDHIKDCLLSDPLRAEASQIISAL 350

Query:   178 CDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADI 237
             CDRLLD+DEN+RKQVVAVICDV+  AL SIPV+T+KLVAERLRDK++LVK YTMERL ++
Sbjct:   351 CDRLLDYDENIRKQVVAVICDVSVSALTSIPVDTMKLVAERLRDKAILVKTYTMERLTEL 410

Query:   238 FRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRH 297
             FR  CLR  +G ++  +F WIPGKILRCLYDKDF SDTIE +LC SLFP+ FSV+D+V+H
Sbjct:   411 FRVYCLRCADGKVDTGDFNWIPGKILRCLYDKDFRSDTIEYILCSSLFPSDFSVRDKVKH 470

Query:   298 WVRIFSGFDRIEMKALEKILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMS 357
             W++IFSGFD++E KA EKILEQ+QR+QQEMQRYLS++Q  Q  DAPEIQKKILF FRVMS
Sbjct:   471 WIQIFSGFDKVETKAFEKILEQRQRIQQEMQRYLSIKQTQQTADAPEIQKKILFGFRVMS 530

Query:   358 RSFAEPAKAEENFLILDQLKDANVWKILMNLLDSNTSFDQAFTGRDDLLKILGAKHRLYD 417
             R+F++P K E+NFLILDQLKDAN+WKIL NLLD NTS  QA   RDD+LKIL  KH LYD
Sbjct:   531 RAFSDPPKTEQNFLILDQLKDANIWKILTNLLDPNTSITQASRIRDDMLKILSEKHSLYD 590

Query:   418 FLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTX 477
             FLSTLS+KCSYLLF+KE+VKEIL EV+ +KSS N   +Q CMD LG+LA F P L  G  
Sbjct:   591 FLSTLSIKCSYLLFSKEYVKEILAEVSVRKSSKNTLGIQPCMDFLGLLACFCPSLFDGAE 650

Query:   478 XXXXXXXXXXXXIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAV 537
                         ++KEG L +LAKAGGTIRE L   +SSVDLLLER+C+EG+R+QAKYAV
Sbjct:   651 EELISFLKDDDEMMKEGTLKILAKAGGTIRENLIVLASSVDLLLERICVEGNRKQAKYAV 710

Query:   538 HALAAITKDDGLKSLSVLYKRLVDMLEEKTHLPAVLQSLGCIAQTAMPVFETRXXXXXXX 597
             HALA+ITKDDGLKSLSVLYKRLVDMLE+K + PAVLQ LGCIAQ AMPV+ETR       
Sbjct:   711 HALASITKDDGLKSLSVLYKRLVDMLEDKRYQPAVLQCLGCIAQIAMPVYETRESEVVEF 770

Query:   598 XXXXXLRCSNKIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGIL 657
                  L+  ++  +D K  WDD+SE+C LKIYGIKTLVKSYLP KDA +R G+DDLLGIL
Sbjct:   771 IRSKILKLKSETVDDKKLSWDDKSEICQLKIYGIKTLVKSYLPFKDAQLRAGVDDLLGIL 830

Query:   658 KSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRLSRQWDHKIPVDVFHLTLRTPEISFPQ 717
             K++LS+GE+SED+ESSSVDKAHLRLA+AKAVLRLSR WD KIP+++FHLTL+TPEI FP 
Sbjct:   831 KNILSFGEVSEDLESSSVDKAHLRLAAAKAVLRLSRHWDDKIPIEIFHLTLKTPEIPFPT 890

Query:   718 AKKLFLSKVHQYVKDRLLDAKYACAFLFGITESKSPEFEEEKQNLADIIQMHHQMKARQI 777
             AKK+FL KVHQYVKDR+L+ KYAC+FLF IT S   E EE+K NLADIIQ  +Q K R+I
Sbjct:   891 AKKIFLGKVHQYVKDRVLEMKYACSFLFDITGSNVLESEEDKHNLADIIQHSYQTKVRKI 950

Query:   778 SVQSDANSFATYPEYIIPYLVHTFAHHSCPDIDECKDVKAFELVYCRLYFIVSMLIHKDE 837
             S Q+DANS   YP +I+PYLVH  AHHSCPD+++CKDVK +E++Y +LY I+SML+HK+E
Sbjct:   951 SAQTDANSVTLYPHHILPYLVHALAHHSCPDVEKCKDVKEYEMIYRQLYLIISMLLHKEE 1010

Query:   838 DVKSEASNKEXXX--XXXXXXXXXKCSEDIVDAAKSKNSHAICDLGLSITKRLSRMEDNS 895
             D K+E  +KE              K SED+ DA KSKNSHAIC+LGLSI   L++ E + 
Sbjct:  1011 DGKTEDIDKEREYVPTIILIFHSIKQSEDVTDATKSKNSHAICELGLSIINHLTQKEPDL 1070

Query:   896 QGVFSSVSLPSTLYKPYEKKEGDDSLASERQTWLADESVLTHFESLKLETHE--VVGSEI 953
             QG  + VSLP TLYKP EK EGD S   E + WLADE+VL HF +LKLE+H    V  + 
Sbjct:  1071 QGEITPVSLPPTLYKPSEKVEGDKSQVGEEKLWLADETVLLHFRALKLESHADASVIPQT 1130

Query:   954 ARHEALDDLEKDGNEVPLGKMIXXXXXXXXXXXXXXXXXXXXXEVKGTENDVDILQMVRE 1013
             + +E + D E DGNE+PLGK++                     E +  +NDVD+L+MVRE
Sbjct:  1131 SENEVMIDGESDGNEIPLGKIVERLRAQGTKTRKGKKNKSVPAEDENGKNDVDVLKMVRE 1190

Query:  1014 INLDNLGVLNKFESSNGHKHFPSKQIKVDLENEEIKKRKATDVTSF-PVPKRRRSLSAHG 1072
             INLD+L +L+KFESSNGHKH PS++ ++   +++  KR   D TS   VPKRRRS S H 
Sbjct:  1191 INLDHLQMLDKFESSNGHKHSPSERAEICQRDQKGNKRNVGDATSVVSVPKRRRSSSGHS 1250

Query:  1073 GFRTPKSNSKAPLR 1086
              ++   S  K  L+
Sbjct:  1251 PYKFSNSGPKVQLK 1264
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0008150 "biological_process" evidence=ND
GO:0005739 "mitochondrion" evidence=IDA
GO:0009507 "chloroplast" evidence=IDA
GO:0005829 "cytosol" evidence=RCA;IDA
GO:0007067 "mitosis" evidence=RCA
RGD|1307094 Pds5a "PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q29RF7 PDS5A "Sister chromatid cohesion protein PDS5 homolog A" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2R7R4 PDS5A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1NIQ3 PDS5A "Sister chromatid cohesion protein PDS5 homolog A" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q5F3V3 PDS5A "Sister chromatid cohesion protein PDS5 homolog A" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q4QXM3 pds5a-a "Sister chromatid cohesion protein PDS5 homolog A-A" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1612 pds5a "PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|I3LU95 PDS5A "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q4KLU7 pds5a-b "Sister chromatid cohesion protein PDS5 homolog A-B" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1508
PHA03169 413 PHA03169, PHA03169, hypothetical protein; Provisio 3e-06
pfam05793 528 pfam05793, TFIIF_alpha, Transcription initiation f 1e-05
TIGR00927 1096 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger 2e-05
TIGR00927 1096 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger 3e-05
COG5271 4600 COG5271, MDN1, AAA ATPase containing von Willebran 9e-05
COG5271 4600 COG5271, MDN1, AAA ATPase containing von Willebran 1e-04
COG5271 4600 COG5271, MDN1, AAA ATPase containing von Willebran 1e-04
PRK05901 509 PRK05901, PRK05901, RNA polymerase sigma factor; P 3e-04
pfam09507427 pfam09507, CDC27, DNA polymerase subunit Cdc27 3e-04
PHA03169 413 PHA03169, PHA03169, hypothetical protein; Provisio 4e-04
PRK13108460 PRK13108, PRK13108, prolipoprotein diacylglyceryl 4e-04
TIGR00927 1096 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger 5e-04
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 6e-04
TIGR01651 600 TIGR01651, CobT, cobaltochelatase, CobT subunit 6e-04
COG5271 4600 COG5271, MDN1, AAA ATPase containing von Willebran 7e-04
PLN02976 1713 PLN02976, PLN02976, amine oxidase 7e-04
COG5271 4600 COG5271, MDN1, AAA ATPase containing von Willebran 8e-04
PHA03169 413 PHA03169, PHA03169, hypothetical protein; Provisio 0.001
COG4547 620 COG4547, CobT, Cobalamin biosynthesis protein CobT 0.002
pfam05793 528 pfam05793, TFIIF_alpha, Transcription initiation f 0.003
COG4547 620 COG4547, CobT, Cobalamin biosynthesis protein CobT 0.003
PLN02967 581 PLN02967, PLN02967, kinase 0.003
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 0.004
COG54061001 COG5406, COG5406, Nucleosome binding factor SPN, S 0.004
>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional Back     alignment and domain information 
 Score = 51.1 bits (122), Expect = 3e-06
 Identities = 22/151 (14%), Positives = 38/151 (25%), Gaps = 18/151 (11%)

Query: 1341 PKPTTVSKVLETNSGDSQGKRADMEDENLTDKEESDKEFKLISEERDVEDTEGNLNGEDE 1400
            P P        T SG      A+          E+ +E +   +E   +           
Sbjct: 46   PAPPA-----PTTSGPQVRAVAEQGHRQTESDTETAEESRHGEKEERGQGGPSG----SG 96

Query: 1401 SDEVDKMDSEEKPAEEVGSVPQDEKSDEEDKEEAESSKGSREEANEDGKSDSEGNEEING 1460
            S+ V         + E  +     ++      E+ +S                   E   
Sbjct: 97   SESVGSPTPSPSGSAEELASGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPE--- 153

Query: 1461 DGSSPMNPEKSQNELPKPVDADDAEISDDEP 1491
                  +   S N+ P        E S +EP
Sbjct: 154  ------SHNPSPNQQPSSFLQPSHEDSPEEP 178

Length = 413
>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) Back     alignment and domain information
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger Back     alignment and domain information
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger Back     alignment and domain information
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] Back     alignment and domain information
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] Back     alignment and domain information
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] Back     alignment and domain information
>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional Back     alignment and domain information
>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27 Back     alignment and domain information
>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|237284 PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase; Reviewed Back     alignment and domain information
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|130712 TIGR01651, CobT, cobaltochelatase, CobT subunit Back     alignment and domain information
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] Back     alignment and domain information
>gnl|CDD|215527 PLN02976, PLN02976, amine oxidase Back     alignment and domain information
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] Back     alignment and domain information
>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|226920 COG4547, CobT, Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) Back     alignment and domain information
>gnl|CDD|226920 COG4547, CobT, Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|215521 PLN02967, PLN02967, kinase Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|227693 COG5406, COG5406, Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1508
KOG15251266 consensus Sister chromatid cohesion complex Cohesi 100.0
KOG15251266 consensus Sister chromatid cohesion complex Cohesi 99.57
PF0946555 LBR_tudor: Lamin-B receptor of TUDOR domain; Inter 98.93
PTZ00429746 beta-adaptin; Provisional 98.87
KOG21711075 consensus Karyopherin (importin) beta 3 [Nuclear s 98.75
PTZ00429746 beta-adaptin; Provisional 98.52
KOG04141251 consensus Chromosome condensation complex Condensi 98.45
KOG10201692 consensus Sister chromatid cohesion protein SCC2/N 98.39
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 98.24
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 98.06
PRK09687280 putative lyase; Provisional 97.75
KOG1060968 consensus Vesicle coat complex AP-3, beta subunit 97.69
KOG18241233 consensus TATA-binding protein-interacting protein 97.54
PRK09687280 putative lyase; Provisional 97.47
KOG2025892 consensus Chromosome condensation complex Condensi 97.42
KOG10201692 consensus Sister chromatid cohesion protein SCC2/N 97.37
KOG18241233 consensus TATA-binding protein-interacting protein 97.25
KOG1060968 consensus Vesicle coat complex AP-3, beta subunit 97.22
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 97.13
KOG2023885 consensus Nuclear transport receptor Karyopherin-b 97.09
smart0033357 TUDOR Tudor domain. Domain of unknown function pre 97.02
KOG2023885 consensus Nuclear transport receptor Karyopherin-b 96.99
KOG0212675 consensus Uncharacterized conserved protein [Funct 96.93
COG5218885 YCG1 Chromosome condensation complex Condensin, su 96.88
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 96.87
KOG1062866 consensus Vesicle coat complex AP-1, gamma subunit 96.85
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 96.84
cd0450848 TUDOR Tudor domains are found in many eukaryotic o 96.76
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 96.71
smart0074361 Agenet Tudor-like domain present in plant sequence 96.71
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 96.65
KOG1061734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 96.47
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 96.43
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 96.32
KOG1242569 consensus Protein containing adaptin N-terminal re 96.3
KOG21711075 consensus Karyopherin (importin) beta 3 [Nuclear s 96.12
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 96.03
KOG1061734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 95.99
COG5096757 Vesicle coat complex, various subunits [Intracellu 95.93
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 95.92
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 95.87
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 95.83
COG5096757 Vesicle coat complex, various subunits [Intracellu 95.56
KOG19491005 consensus Uncharacterized conserved protein [Funct 95.34
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 94.62
KOG0212675 consensus Uncharacterized conserved protein [Funct 94.45
KOG04141251 consensus Chromosome condensation complex Condensi 94.32
COG50981128 Chromosome condensation complex Condensin, subunit 94.26
COG5240898 SEC21 Vesicle coat complex COPI, gamma subunit [In 94.09
PF09038122 53-BP1_Tudor: Tumour suppressor p53-binding protei 94.01
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 93.95
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 93.62
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 93.53
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 93.07
KOG4675273 consensus Uncharacterized conserved protein, conta 92.97
KOG19491005 consensus Uncharacterized conserved protein [Funct 92.95
KOG1059877 consensus Vesicle coat complex AP-3, delta subunit 92.88
PF05804708 KAP: Kinesin-associated protein (KAP) 92.76
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 92.62
KOG20111048 consensus Sister chromatid cohesion complex Cohesi 92.39
PF01347618 Vitellogenin_N: Lipoprotein amino terminal region; 92.14
KOG2259823 consensus Uncharacterized conserved protein [Funct 92.07
KOG04131529 consensus Uncharacterized conserved protein relate 91.99
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 91.94
PF1036392 DUF2435: Protein of unknown function (DUF2435) 91.29
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 91.23
KOG2259823 consensus Uncharacterized conserved protein [Funct 91.09
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 90.93
PF05918556 API5: Apoptosis inhibitory protein 5 (API5); Inter 90.65
PF06003264 SMN: Survival motor neuron protein (SMN); InterPro 90.34
KOG2025892 consensus Chromosome condensation complex Condensi 90.22
KOG09151702 consensus Uncharacterized conserved protein [Funct 89.94
KOG1078865 consensus Vesicle coat complex COPI, gamma subunit 89.9
PF1276542 Cohesin_HEAT: HEAT repeat associated with sister c 89.15
COG50981128 Chromosome condensation complex Condensin, subunit 88.98
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 88.96
TIGR02270410 conserved hypothetical protein. Members are found 88.84
KOG1820815 consensus Microtubule-associated protein [Cytoskel 88.74
KOG09151702 consensus Uncharacterized conserved protein [Funct 88.03
KOG19431133 consensus Beta-tubulin folding cofactor D [Posttra 87.69
KOG1242569 consensus Protein containing adaptin N-terminal re 86.35
KOG20111048 consensus Sister chromatid cohesion complex Cohesi 86.32
COG1413335 FOG: HEAT repeat [Energy production and conversion 85.85
TIGR02270410 conserved hypothetical protein. Members are found 84.89
COG1413335 FOG: HEAT repeat [Energy production and conversion 83.8
KOG2956516 consensus CLIP-associating protein [General functi 82.98
KOG19671030 consensus DNA repair/transcription protein Mms19 [ 82.22
COG5240898 SEC21 Vesicle coat complex COPI, gamma subunit [In 81.3
PF14500262 MMS19_N: Dos2-interacting transcription regulator 80.77
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information 
Probab=100.00  E-value=1.9e-101  Score=991.43  Aligned_cols=907  Identities=27%  Similarity=0.411  Sum_probs=753.7

Q ss_pred             CHHHHHHHhhcccCccHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHhhhhhHHHHHHHHHhhhcCCC-CCCCCchhHH
Q 000441            1 MQTIMIVLLEESEDIQEDLLVILLSALGRNKN---DTARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDS-RPGHSHIDYH   76 (1508)
Q Consensus         1 M~dIL~~lIeEs~~Vp~~vLDvIL~qf~~~ks---~~Ay~LA~~Ic~~~~dkLq~~I~qyF~~vi~~d~-~~~~~~~kaH   76 (1508)
                      |.+||.++|+|.++||.++|++||.+|++++.   +.|++||..+++.|++.+++.|++||+..|.++. .-+....++|
T Consensus       164 ~~~i~~~li~e~d~v~~e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~~~h  243 (1266)
T KOG1525|consen  164 MLDIAIMLITEEDTVQSELLDVLLENLVKPGRDTIKEADKLASDLIERCADNLEDTIANFLNSCLTEYKSRQSSLKIKYH  243 (1266)
T ss_pred             HHHHHHHHHHhhccchHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHhhhhhchhHHHHHHHHHhhccccccchhhHHH
Confidence            78999999999999999999999999987754   3999999999999999999999999999988764 3455677899


Q ss_pred             HHHHHHHhhCchhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhhcCCChhHHHHHHHH
Q 000441           77 EVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEH  156 (1508)
Q Consensus        77 eLI~eL~~~~P~lL~sVIPqLe~EL~aed~~~RllAT~lLG~Mfs~~gs~fa~~y~~~w~~fL~R~~Dks~~VR~~wVe~  156 (1508)
                      +||++||+++|++|++|||||++||+++++.+|+.||.++|+||+.+++.++.+|+++|.+||+||+|++++||++||++
T Consensus       244 e~i~~L~~~~p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~  323 (1266)
T KOG1525|consen  244 ELILELWRIAPQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVES  323 (1266)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHH
Confidence            99999999999999999999999999999999999999999999999998999999999999999999999999999999


Q ss_pred             hHHhHhcCCCCCChHHHHHHHHHhhcCCchHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHhccCChhHHHHHHHHHHH
Q 000441          157 VKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLAD  236 (1508)
Q Consensus       157 ~~~IL~~~p~~~~~~eIi~~L~~rL~D~DEkVR~aaVkaI~~la~~~l~~Vs~elL~~LaeR~RDKK~~VR~eAm~~La~  236 (1508)
                      +++||.+||+...+..+.-+|+.|+.|++++||..+|.++|+++...+..++. +|+.|+||+||||+.||++||++|++
T Consensus       324 ~~~~l~~~~~~~~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~Laq  402 (1266)
T KOG1525|consen  324 IKQCLLNNPSIAKASTILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQ  402 (1266)
T ss_pred             hHHHHhcCchhhhHHHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            99999999998887888889999999999999999999999999999999999 99999999999999999999999999


Q ss_pred             HHHHh-hhhccCCCcchhhcccchHHHhhhhccCCCCc-chHHHHhhccCcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 000441          237 IFRGC-CLRNFNGSINQNEFEWIPGKILRCLYDKDFGS-DTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRIEMKALE  314 (1508)
Q Consensus       237 LY~~~-~~~~~~~~~~~~~~~wIPskIL~~~Y~nD~e~-~lVE~vL~e~LlP~~~~~~~R~~rll~l~~~LD~~a~kaf~  314 (1508)
                      +|+.+ |..++.+...+..|.|||++||++||.|+.+. .+||++|+++|+|+++++++||++|+++|.+||..+.++|.
T Consensus       403 lYk~~~~~~~~~~k~~t~~~swIp~kLL~~~y~~~~~~r~~vE~il~~~L~P~~l~~q~Rmk~l~~~l~~~D~~a~kaf~  482 (1266)
T KOG1525|consen  403 LYKNVYCLRSAGGKEITPPFSWIPDKLLHLYYENDLDDRLLVERILAEYLVPYPLSTQERMKHLYQLLAGLDLNAHKAFN  482 (1266)
T ss_pred             HHHHHHHhhccCcccccccccccchhHHhhHhhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcccHhhhhHHH
Confidence            99974 44455567788999999999999999998774 58999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHhh--hcHHHHHHHHHHhcCC
Q 000441          315 KILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILDQL--KDANVWKILMNLLDSN  392 (1508)
Q Consensus       315 ~il~~q~~l~~~~~~yL~l~e~~n~gd~~ei~~kL~~~I~~Ls~~fPDp~Ka~e~L~kFakl--nD~RiykLLk~~idp~  392 (1508)
                      .|+++|.+++.+|+.||.++...+.++   ..+++...|..++..||||..+..+..+|++.  .+..+..++..+..+.
T Consensus       483 ~i~~~q~~ls~~vr~~I~~~k~~~~d~---~~k~i~~~i~~i~~~lpD~~s~~~~~~~f~~~L~~~~~~~s~~~~L~~~~  559 (1266)
T KOG1525|consen  483 EILKRQSRLSEEVRDYITLSKTPNTDD---SMKKIFSKIVKISENLPDPSSRSYDSMKFADVLETLAKVRSCLVSLDSPS  559 (1266)
T ss_pred             HHHHHHHHHHHHHHHHhccccCCCccH---hHHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            999999999999999999998776543   77888899999999999999999999999873  6778889999999998


Q ss_pred             CCHHHHHHHHHHHHHHhcC----CCchHHHHHHHHHhhhccccCh-HHHHHHHHHHHhhccc-------ch--hhhHHHH
Q 000441          393 TSFDQAFTGRDDLLKILGA----KHRLYDFLSTLSMKCSYLLFNK-EHVKEILLEVAAQKSS-------AN--AQFMQSC  458 (1508)
Q Consensus       393 td~ktv~ka~kELlkrL~~----~~~~~d~l~~Ll~RsS~lifNk-s~V~~LL~~~~~~~~~-------~~--~~~~~~a  458 (1508)
                      ..|+++.-.+++++.+++.    ++.+..+.+.|+.|..++.+.. +.+..++.....+...       ++  .......
T Consensus       560 ~~C~~l~~~v~~~l~e~~~~~~s~nlF~~~~~~li~~I~~v~~di~~s~~~~ik~~~~~i~~~~~~l~e~v~~~~a~kl~  639 (1266)
T KOG1525|consen  560 ISCKELLITVKEILFELGRKKQSKNLFSSMEKELIERIAEVSLDILESISALIKLNNIVIAEVSLLLLEGVLSEKALKLK  639 (1266)
T ss_pred             hhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHhcchhhhhHHHHHHHHhhhhhhHHHHHhhcccccchhhHHhHH
Confidence            8888766555665555554    4557788888999999987777 7777777665432111       11  2334566


Q ss_pred             HHHHHHHHhhCCcCcccc--HHHHHHHHhhccccchHHHHHHHHHhhcchhhhhhcccchHHHHHHHHhhcCCHHHHHHH
Q 000441          459 MDILGILARFSPLLLGGT--EEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYA  536 (1508)
Q Consensus       459 ~eLL~~IS~~~P~lFk~~--v~~L~~lL~~~n~~~~e~~LkaLa~~~k~~~e~~~~~~s~l~~~L~~lal~GtP~qAK~A  536 (1508)
                      ..||..+|..+|.+|...  +..++..+....+...+.+|+.+-..|+......+.....+...+..+++.|+|.+||+|
T Consensus       640 ~~lle~ls~~~~~~~~~s~~v~~i~~~~~~~~~~~~~~vLk~~~~~~~~~~~~~~si~~~~~~~~~~~~~~g~~~q~k~~  719 (1266)
T KOG1525|consen  640 KYLLEALSSIHPDLFKYSESVLSILEKLFSEPDVVAPVVLKKLESQGKKIEVEAPSILSTLSRVLAKKELSGTPEQAKLA  719 (1266)
T ss_pred             HHHHHHhhhcCcchhhhhHHHHHHHHHhccchhhhhHHHHHHHHhccccccccchhhhcchhhhhhHHHHcCCcchhHHH
Confidence            789999999999998877  577777777766667888999999888655555666677889999999999999999999


Q ss_pred             HHHHHhhcCCCccchHHHHHHHHHHhhhcc-----CCCchHHHHHHHHHhhcccccc-cchHHHHHHHHHhhhccCCccC
Q 000441          537 VHALAAITKDDGLKSLSVLYKRLVDMLEEK-----THLPAVLQSLGCIAQTAMPVFE-TRESEIEEFIKSKILRCSNKIR  610 (1508)
Q Consensus       537 VriLaa~~~~~~~~~~~~L~~~Lv~~L~~~-----s~l~t~LasL~~Ia~~aP~vfe-~~~~eI~~fiik~ILl~~~~~~  610 (1508)
                      ++|+.++...+.. .+...+..+.+.+.+.     .++.+.+.+||+|+.+.|..|- .....+..||++++++.++.++
T Consensus       720 ~~~i~~~~~s~~~-~l~q~~~~~~d~l~~~~~~~~e~~~~~i~~lgei~~~~p~~~~~~~k~~~~~~IvK~~~~~~~~~~  798 (1266)
T KOG1525|consen  720 KRCIKAILQSKFC-KLKQTFEEIKDNLLEDLTSELEGLRTPIVTLGEIFLDLPSQFLDPLKSDVAKFIVKKVLSNDDSPG  798 (1266)
T ss_pred             hhhhhHHhhhhhh-HHHHHhhhhHHHHhhhhhhhhhccccchhhhhhHhhhccHhhcchhhhhhHHHHHHHHhcCCCccc
Confidence            9999988876532 2344566666665433     4999999999999999995554 4577899999999988888877


Q ss_pred             CC-CCCCCCCc----hhhHHHHHHHHHHHHHhhcCCCcccccc--hhHHHHHHHHHhh-ccCCCccCCCCChhhhhhhhH
Q 000441          611 ND-TKACWDDR----SELCLLKIYGIKTLVKSYLPVKDAHIRP--GIDDLLGILKSML-SYGEMSEDIESSSVDKAHLRL  682 (1508)
Q Consensus       611 ~~-~~~~W~d~----se~~~aKi~aLK~Lvn~ll~~~~~~~~~--~~~~ll~lL~~il-~~GEl~~~~~tp~~~ksrLRL  682 (1508)
                      +. ....|+..    +..+.+|+.|++++++||++...+.-+.  .+...+.+|..++ +.|++..+..+|..++++||+
T Consensus       799 e~~~~~~~~P~~~~~~p~~~~k~~a~~L~~~~l~~~~~d~~~~e~s~~~~~~~L~~ll~~~gdl~~~~~~~~~~~sklr~  878 (1266)
T KOG1525|consen  799 EKNKSKEWLPSDKLLSPNTSLKVLAIKLLVRRLLDLEEDKEKDELSTPRSFRLLSKLLNSEGDLTEQNRDPKSDQSKLRL  878 (1266)
T ss_pred             cccCccccCCcccccchhhhhHHHHHHHhhhhccccccCcchhhhcchhHHHHHHHHHhhcCCCCcccCCcchhhhhhhh
Confidence            65 56778763    4468889999999999999987642111  1112566777764 699999998999999999999


Q ss_pred             HHHHHHHHhhhc--cCCCCCHHHHHHHhhcccCCchhHHHHHHHHHHHhHhcCCCchhHHHHHhhhhcCCCCCchHHH-H
Q 000441          683 ASAKAVLRLSRQ--WDHKIPVDVFHLTLRTPEISFPQAKKLFLSKVHQYVKDRLLDAKYACAFLFGITESKSPEFEEE-K  759 (1508)
Q Consensus       683 ~Aa~~lLKLa~~--~d~~i~~~~f~ll~l~~qD~~~~VR~~Fl~KL~k~L~~~~Lp~ry~al~fl~a~a~ep~e~~e~-K  759 (1508)
                      .|+.++||||..  +..++++++|..+++.++|++++||..|+.||++++...+||.-|++.|+|++.+...  ...+ +
T Consensus       879 ~a~~~ilKl~~~~~~~e~~~~~~~~~~~~~i~de~~~vR~~f~~kl~k~l~~i~lp~~~~a~~~l~~~d~~~--~~~~~~  956 (1266)
T KOG1525|consen  879 TAKITILKLASEKSYHEFINAEQYEKLILLISDECLQVRLVFLLKLHKGLSRIKLPLEYMAKFKLCAPDVSK--ELLANK  956 (1266)
T ss_pred             hhhheeeecccccchhccCCHHHHHHHHHHhcCCchhHHHHHHHHccccccccccchhhhhHHHHhccchhh--hhhhHH
Confidence            999999999986  6788999999999999999999999999999999999999999999999996533211  1111 1


Q ss_pred             HHHHHHHHHHHHHHHhhhhhccccccccCcchhHHHHHHHHhcCCCCCCCCccccHHHHHHHHHHHHHHHHHhhccCccc
Q 000441          760 QNLADIIQMHHQMKARQISVQSDANSFATYPEYIIPYLVHTFAHHSCPDIDECKDVKAFELVYCRLYFIVSMLIHKDEDV  839 (1508)
Q Consensus       760 ~~l~~~I~~~~~~~~R~~s~~s~~~~~~~~pEy~LprLIhLLAHH~~Pd~~~~~d~~~l~~~~ryL~F~L~~L~~~~e~~  839 (1508)
                      ....+-.-.-++.......+.++ ......|||+.+|.+|+||||  |+|...++++.|..+..++||.++.|..+.   
T Consensus       957 ~~~~t~~~~~~r~~t~~e~~~s~-~~~~~~~e~V~~~~~~~la~d--~~~~~~edv~~l~~~ke~~~~vl~~l~~~~--- 1030 (1266)
T KOG1525|consen  957 REEETKNSASRREQTKFERATSD-GTLAHLPEYVGSYVIHLLAHD--PDFVKAEDVDSLSDLKECLWFVLEDLDEEN--- 1030 (1266)
T ss_pred             HHhhhhcchhhhhhhhhhhccCc-hhhhhhhHHhhhhhhhhhccC--ccccccchhhhHHHHHHhHHHHHhhhhhhh---
Confidence            11111110000000111111111 125688999999999999999  999998899999999999999999996542   


Q ss_pred             cccccccccHH--HHHHHHHHhhcccccccc---ccccchHHHHHHHHHHHHHHhc-cCCCCcccccccCCCccccCCCC
Q 000441          840 KSEASNKESIS--VIISIFRSIKCSEDIVDA---AKSKNSHAICDLGLSITKRLSR-MEDNSQGVFSSVSLPSTLYKPYE  913 (1508)
Q Consensus       840 ~~~~~~~eNiS--lLy~la~rVKq~rDa~d~---~~S~nly~LcDLAq~IIk~~aq-k~w~lq~yPGkV~LPs~lF~p~~  913 (1508)
                             +|+.  +.-.+.+-+++.+|...+   ..+..||+|||+|+.|+..... .+|...+|||+..||..+|.++.
T Consensus      1031 -------~n~~~~~~~~~~~~~~~~~d~~s~~d~~~~~kl~~l~d~a~~i~~sk~~~~s~~~tt~~~~~~lp~~~~~~~~ 1103 (1266)
T KOG1525|consen 1031 -------ENNQHKFWKREKEEIKGSEDEESPDDVGDNIKLYTLCDLAQCIILSKSTKFSNSSTTSPGKLNLPALSFTSPK 1103 (1266)
T ss_pred             -------ccchhHHHHHHHhhhhcchhhcCCcccCCCceeeeHHhHHHHHHhcccccccCCCCCCCccccCchhhhCCcc
Confidence                   3332  333444556677787643   3456899999999999998885 78999999999999999999886


Q ss_pred             CCCccccccccccccccch
Q 000441          914 KKEGDDSLASERQTWLADE  932 (1508)
Q Consensus       914 s~e~~ea~~i~~k~yLpde  932 (1508)
                      +.    + -+..++|+|++
T Consensus      1104 ~k----n-~~~~k~~i~e~ 1117 (1266)
T KOG1525|consen 1104 DK----N-FINNKIYIPEE 1117 (1266)
T ss_pred             hh----h-hccccccCCch
Confidence            42    2 34689999999

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>smart00333 TUDOR Tudor domain Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>smart00743 Agenet Tudor-like domain present in plant sequences Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1949 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>PF09038 53-BP1_Tudor: Tumour suppressor p53-binding protein-1 Tudor; InterPro: IPR015125 This domain consist of ten beta-strands and a carboxy-terminal alpha-helix Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>KOG4675 consensus Uncharacterized conserved protein, contains ENT domain [General function prediction only] Back     alignment and domain information
>KOG1949 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] Back     alignment and domain information
>KOG2259 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown] Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>PF10363 DUF2435: Protein of unknown function (DUF2435) Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>KOG2259 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>PF06003 SMN: Survival motor neuron protein (SMN); InterPro: IPR010304 This family consists of several eukaryotic survival motor neuron (SMN) proteins Back     alignment and domain information
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion Back     alignment and domain information
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton] Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>KOG2956 consensus CLIP-associating protein [General function prediction only] Back     alignment and domain information
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1508
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-17
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-16
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-09
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 9e-06
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 87.6 bits (216), Expect = 2e-17
 Identities = 94/638 (14%), Positives = 201/638 (31%), Gaps = 138/638 (21%)

Query: 337 HQDGDAPEIQ---KKILFCFRVMSRSFAEPAKAEENFLILDQLKDANVWKILMNLLDSNT 393
           H D +  E Q   K IL  F             E+ F+      + +   +     D   
Sbjct: 6   HMDFETGEHQYQYKDILSVF-------------EDAFV-----DNFDCKDVQ----DM-- 41

Query: 394 SFDQAFTGR--DDLLKILGAKHRLYDFLSTLSMKCSYLLFNKEHVKEIL----------L 441
                 +    D ++    A         TL  K   ++  ++ V+E+L          +
Sbjct: 42  -PKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV--QKFVEEVLRINYKFLMSPI 98

Query: 442 EVAAQKSSANAQFMQSCMDIL-GILARFSPLLLGGTEEELVNLLKEENEIIKEG---ILH 497
           +   ++ S   +      D L      F+   +  +  +    L++    ++     ++ 
Sbjct: 99  KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV--SRLQPYLKLRQALLELRPAKNVLID 156

Query: 498 --------VLAKAGGTIREQ--------------LAATSSSVDLL--LERLCLEGSRRQA 533
                    +A                       L   +S   +L  L++L  +      
Sbjct: 157 GVLGSGKTWVALD--VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT 214

Query: 534 KYAVHALAAITKDDGLKS-LSVL-----YKR--LV-DMLEEKTHLPAVLQSLGCIAQTAM 584
             + H+     +   +++ L  L     Y+   LV   ++      A   +L C  +   
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF--NLSC--KI-- 268

Query: 585 PVFETRESEIEEFIKSKILRCSNKIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPVKDA 644
            +  TR  ++ +F+ +        + + +     D  +  LLK    +      LP +  
Sbjct: 269 -LLTTRFKQVTDFLSAAT-TTHISLDHHSMTLTPDEVKSLLLKYLDCRP---QDLPREVL 323

Query: 645 HIRPGIDDLLG-ILKSMLS---------YGEMSEDIESS--SVDKAHLR-LASAKAVLRL 691
              P    ++   ++  L+           +++  IESS   ++ A  R +    +V   
Sbjct: 324 TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP 383

Query: 692 SRQWDHKIPVDVFHLTLRTPEISFPQAKKLFLSKVHQYVKDRLLDAKYACAFLFGITESK 751
                  IP  +  L       S      + ++K+H+Y    L++ K        I    
Sbjct: 384 ----SAHIPTILLSLIWFDVIKSDVM---VVVNKLHKY---SLVE-KQPKESTISI---- 428

Query: 752 SPE-FEEEKQNLADIIQMHHQM-KARQISVQSDANSFATYPEYIIPYLVHTFAHHSCPDI 809
            P  + E K  L +   +H  +     I    D++     P Y+  Y      HH   +I
Sbjct: 429 -PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI--PPYLDQYFYSHIGHH-LKNI 484

Query: 810 DECKDVKAFELVYCRLYFIVSMLIHKDEDVKSEASNKESISVIIS----IFRSIKCSE-- 863
           +  + +  F +V+    F+   + H      +  S   ++  +      I  +    E  
Sbjct: 485 EHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERL 544

Query: 864 --DIVDAAKSKNSHAICDLGLSITKRLSRMEDNSQGVF 899
              I+D       + IC     +  R++ M ++   +F
Sbjct: 545 VNAILDFLPKIEENLICSKYTDLL-RIALMAEDE-AIF 580
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1508
d2vglb_579 a.118.1.10 (B:) Adaptin beta subunit N-terminal fr 1e-04
d2vgla_584 a.118.1.10 (A:) Adaptin alpha C subunit N-terminal 9e-04
d1u6gc_1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 9e-04
d1b3ua_588 a.118.1.2 (A:) Constant regulatory domain of prote 0.003
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1508
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 99.42
d1b3ua_588 Constant regulatory domain of protein phosphatase 99.33
d1b3ua_588 Constant regulatory domain of protein phosphatase 99.28
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 99.09
d1u6gc_1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 99.09
d1u6gc_1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 99.02
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 98.9
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 98.85
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 98.67
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 98.47
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 98.13
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 97.65
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 97.37
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 97.3
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 97.02
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 96.83
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 96.68
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 96.57
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 96.35
d2d9ta160 Tudor domain-containing protein 3, TDRD3 {Mouse (M 95.39
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 95.07
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 95.03
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 94.74
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 94.66
d1mhna_59 Survival motor neuron protein 1, smn {Human (Homo 94.57
d2diga155 Lamin-b receptor {Human (Homo sapiens) [TaxId: 960 93.17
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 91.91
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 91.02
d2diqa197 Tudor and KH domain-containing protein TDRKH {Huma 90.96
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 88.45
d1lrva_233 Leucine-rich repeat variant {Azotobacter vinelandi 87.42
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 86.31
d2hqxa190 P100 co-activator, SND1 {Human (Homo sapiens) [Tax 86.05
d1lrva_233 Leucine-rich repeat variant {Azotobacter vinelandi 85.5
d2g3ra153 p53-binding protein 1, 53BP1 {Human (Homo sapiens) 82.28
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2d9ta1 b.34.9.1 (A:8-67) Tudor domain-containing protein 3, TDRD3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1mhna_ b.34.9.1 (A:) Survival motor neuron protein 1, smn {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2diga1 b.34.9.1 (A:8-62) Lamin-b receptor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2diqa1 b.34.9.1 (A:8-104) Tudor and KH domain-containing protein TDRKH {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hqxa1 b.34.9.1 (A:8-97) P100 co-activator, SND1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d2g3ra1 b.34.9.1 (A:1485-1537) p53-binding protein 1, 53BP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure