Citrus Sinensis ID: 000444

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------1370------1380------1390------1400------1410------1420------1430------1440------1450------1460------1470------1480------1490------150
MLSISSGFARPSRGVTSTKFGSALNIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKREIEGNPDFSNKDVGASQPQLVPEVKPAIVSPLGHVDLPLDVASPPNSGGPTHLLSQYAAPLRLSSGTLMEDEKLAALGISDQLPSAQGLFQASQSQSPFSVSQLSTPIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSISSQLRNSLQGLTIASELLEQAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAQQLSLRRKHREGVGSSFFDPNIYAQGSMGVPEALRPKPGHLSVSQQRVYEDFVRLPWQNQSSQGSHAMSAGSLTSSGDAAQASAYGLAGGQGNQGYSSSAGSTGFDAVSRPSDVASGTTESTSAGFLSTSLVHIGAADGGILHNSESESVNAAFTPAATELYAADSTEPVKEPGASSQSLPSTAAPERIGSSILEPSLQTRDALDKYHIVAQKLDALIGNDAREAEVQGVISEVPEIILRCISRDEAALAVAQKVFKGLYENASNNLHFSAHLAILAAIRDVCKLVVKELTSWVIYSDEERKFNRDITMGLIRSELLNLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVTDESRVVISELHNLVDALAKLAAKPGSPESLQQLIEIVRNPAANANASSGATTAKDDKARQSKDKKAYSHTTANREDYNIPESVDPDPVGFPEQVSMLFAEWYQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFFRRLTEVSVAHCLSSEVINPGTLQSPQQSQSLSFLAIDIYAKLMLSILKCCPVEQGSSKIFLLSKILTVTVKFILKDAEEKKASFNPRPYFRLFINWLLDMSSLDPVADGSNFQILSAFANAFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIGNGQKGWPYIQRLLVNLLQFLEPFLRNAELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLPEIRDPPRIFSEVDAALRAKQMRADVDDYLKTGQPGSSFLSELKQKLLLPPSEAASAGTRYNVPLINSLVLYVGMQAIHQLQTRTSHAQSTGNNSSLTAFLVSAALDIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYAEANQEIIQEQITRVLFERLIVNRPHPWGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVARSCGGLKPVDDSMVSGWVPDNTH
cccccccccccccccccccccccccHHHHHHHHHccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHcccEEEEEHHHHHHHcccccccccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccccccccccccccHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHcccHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHcccccccccHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHcHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccc
cccccccccccccccccccccccccHHHHcccccccccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcHHHHccHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHcccEEEEEcHHHHHHHHHccccEcccccHHHHHHHHHHHHHHHccccEEEEEEEEEEHHHHccccHHcccccccccccHHHHHcccccccccccccccccccccccccccccccccccccHcccccccccHHHccccccccccccccccccccccccccccccccccHccccccccccccccccHHcccccccEEEEcccccHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccccccHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccHcHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHcccccccccccccccccHccHHHHccccccccccHHHHccccHHHHHHHHHHcccccHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccHccccHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccccccccHHHccHHHHHHHHHHHHHHccccccccccEccccccccc
mlsissgfarpsrgvtstkfgsALNIETLVAAAERretpieapasevQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGLMIAVIPFtskilepcqsslayqppnpwTMAILGLLAEIysmpnlkmnLKFDIEVLFKNlgvdmkditptsllkdrkreiegnpdfsnkdvgasqpqlvpevkpaivsplghvdlpldvasppnsggpthllsqyaaplrlssgtlmedeKLAALgisdqlpsaqglfqasqsqspfsvsqlstpipnigthvIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSlahvtckeplrgsiSSQLRNSLQGLTIASELLEQAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAQQLSLRRkhregvgssffdpniyaqgsmgvpealrpkpghlsvsqQRVYEdfvrlpwqnqssqgshamsagsltssgdaaqasayglaggqgnqgysssagstgfdavsrpsdvasgttestsagflSTSLVHigaadggilhnsesesvnaaftpAATElyaadstepvkepgassqslpstaaperigssilepslqtrdaLDKYHIVAQKLDALIGNDAREAEVQGVISEVPEIILRCISRDEAALAVAQKVFKGLYenasnnlhFSAHLAILAAIRDVCKLVVKELTSWVIYSDEERKFNRDITMGLIRSELLNLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVTDESRVVISELHNLVDALAKLaakpgspesLQQLIEIVRnpaananassgattakddkarqskdkkayshttanredynipesvdpdpvgfpeQVSMLFAEWYQicelpgsndaACTRYVLQLHqngllkgddmTDRFFRRLTEVSVAHClssevinpgtlqspqqsqsLSFLAIDIYAKLMLSILKccpveqgsskiFLLSKILTVTVKFILKDAeekkasfnprpyFRLFINWLldmssldpvadgsnfQILSAFANAFHvlqplkvpaFSFAWLELVShrsfmpklligngqkgwPYIQRLLVNLLQFLEPFlrnaelgvpvrfLYKGTLRVLLVLLHdfpeflcdyhftfcdvippsciQMRNIILsafprnmrlpdpstpnlkidllpeirdpprifSEVDAALRAKQMRADVDdylktgqpgssfLSELKQklllppseaasagtrynvplINSLVLYVGMQAIHQLQTRtshaqstgnnsSLTAFLVSAALDIFQTLIQDLDTEGRYLFLNAAAnqlrypnnhthYFSFVLLYLYAEANQEIIQEQITRVLFERLivnrphpwgLLITFIELiknprynfwnqsfiRCAPEIEKLFESVArscgglkpvddsmvsgwvpdnth
mlsissgfarpsrgvtstkfgsalNIETLVAAAERRETPieapasevqdkISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKnlgswlgkltigrnqvlrareidpkSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNlgvdmkditptsllkdrkreiegnpdfsnkdvgASQPQLVPEVKPAIVSPLGHVDLPLDVASPPNSGGPTHLLSQYAAPLRLSSGTLMEDEKLAALGISDQLPSAQGLFQASQSQSPFSVSQLSTPIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSgivqrsvsiatqttkelvlKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSISSQLRNSLQGLTIASELLEQAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAQQLSLRRKHREGVGSSFFDPNIYAQGSMGVPEALRPKPGHLSVSQQRVYEDFVRLPWQNQSSQGSHAMSAGSLTSSGDAAQASAYGLAGGQGNQGYSSSAGSTGFDAVSRPSDVASGTTESTSAGFLSTSLVHIGAADGGILHNSESESVNAAFTPAATELYAADSTEPVKepgassqslpstaaperigSSILEPSLQTRDALDKYHIVAQKLDALIGNDAREAEVQGVISEVPEIILRCISRDEAALAVAQKVFKGLYENASNNLHFSAHLAILAAIRDVCKLVVKELTswviysdeerkfnrdITMGLIRSELLNLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVTDESRVVISELHNLVDALAKLAAKPGSPESLQQLIEIVRNPAananassgattakddkarqskdkkayshttanredynipesVDPDPVGFPEQVSMLFAEWYQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFFRRLTEVSVAHCLSSEVINPGTLQSPQQSQSLSFLAIDIYAKLMLSILKCCPVEQGSSKIFLLSKILTVTVKFILKDaeekkasfnprpYFRLFINWLLDMSSLDPVADGSNFQILSAFANAFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIGNGQKGWPYIQRLLVNLLQFLEPFLRNAELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKidllpeirdppRIFSEVDAALRAKQMRADVDDYLKTGQPGSSFLSELKQKLLLPPSEAASAGTRYNVPLINSLVLYVGMQAIHQLQTRTSHAQSTGNNSSLTAFLVSAALDIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYAEANQEIIQEQITRVLFERLIVNRPHPWGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVARSCGglkpvddsmvsgwvpdnth
MLSISSGFARPSRGVTSTKFGSALNIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKREIEGNPDFSNKDVGASQPQLVPEVKPAIVSPLGHVDLPLDVASPPNSGGPTHLLSQYAAPLRLSSGTLMEDEKLAALGISDQLPSAQGLFQASQSQSPFSVSQLSTPIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSISSQLRNSLQGLTIASELLEQAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAQQLSLRRKHREGVGSSFFDPNIYAQGSMGVPEALRPKPGHLSVSQQRVYEDFVRLPWQNQSSQGSHAMSAGSLTSSGDAAQASAYGLAGGQGNQGYSSSAGSTGFDAVSRPSDVASGTTESTSAGFLSTSLVHIGAADGGILHNSESESVNAAFTPAATELYAADSTEPVKEPGASSQSLPSTAAPERIGSSILEPSLQTRDALDKYHIVAQKLDALIGNDAREAEVQGVISEVPEIILRCISRDEAALAVAQKVFKGLYENASNNLHFSAHLAILAAIRDVCKLVVKELTSWVIYSDEERKFNRDITMGLIRSELLNLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVTDESRVVISELHNLVDALAKLAAKPGSPESLQQLIEIVRNPaananassgattaKDDKARQSKDKKAYSHTTANREDYNIPESVDPDPVGFPEQVSMLFAEWYQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFFRRLTEVSVAHCLSSEVINPGTlqspqqsqslsFLAIDIYAKLMLSILKCCPVEQGSSKIFLLSKILTVTVKFILKDAEEKKASFNPRPYFRLFINWLLDMSSLDPVADGSNFQILSAFANAFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIGNGQKGWPYIQRLLVNLLQFLEPFLRNAELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLPEIRDPPRIFSEVDAALRAKQMRADVDDYLKTGQPGSSFLSELKQKLLLPPSEAASAGTRYNVPLINSLVLYVGMQAIHQLQTRTSHAQSTGNNSSLTAFLVSAALDIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYAEANQEIIQEQITRVLFERLIVNRPHPWGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVARSCGGLKPVDDSMVSGWVPDNTH
**********************ALNIETLVA****************QDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIK******SLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDIT********************************************************************************************************************PIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSISSQLRNSLQGLTIASELLEQAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAQQLSL********GSSFFDPNIYA***********************VYEDFVRLPW********************************************************************FLSTSLVHIGAADGGIL***********************************************************DALDKYHIVAQKLDALIGNDAREAEVQGVISEVPEIILRCISRDEAALAVAQKVFKGLYENASNNLHFSAHLAILAAIRDVCKLVVKELTSWVIYSDEERKFNRDITMGLIRSELLNLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVTDESRVVISELHNLVDALAKLA*******************************************************************GFPEQVSMLFAEWYQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFFRRLTEVSVAHCLSSEVIN************LSFLAIDIYAKLMLSILKCCPVEQGSSKIFLLSKILTVTVKFILKDAEEKKASFNPRPYFRLFINWLLDMSSLDPVADGSNFQILSAFANAFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIGNGQKGWPYIQRLLVNLLQFLEPFLRNAELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRN************IDLL********IF***********************************************GTRYNVPLINSLVLYVGMQAIHQLQT************SLTAFLVSAALDIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYAEANQEIIQEQITRVLFERLIVNRPHPWGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVARSCGGLKPV**************
************************NIETLVA**************EVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLL***************************************************************************************************************PIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSISSQLR***************AVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAQQLSL************FDPNIYAQGSMGV***************QRVYEDFV***********************************************************************************************************************************************SLQTRDALDKYHIVAQKLDALIGNDAREAEVQGVISEVPEIILRCISRDEAALAVAQKVFKGLYENASNNLHFSAHLAILAAIRDVCKLVVKELTSWVIYSDEERKFNRDITMGLIRSELLNLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVTDESRVVISELHNLVDALAKL********************************************************************GFPEQVSMLFAEWYQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFFRRLTEVSVAHCL*******************SFLAIDIYAKLMLSILKCCPVEQGSSKIFLLSKILTVTVKFILKDAEEKKASFNPRPYFRLFINWLLDMSSLDPVADGSNFQILSAFANAFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIGNGQKGWPYIQRLLVNLLQFLEPFLRNAELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPS***********IRDPPRIFSEVDAALRAKQMRADVDDYLKTGQPGS**********************RYNVPLINSLVLYVGMQAIHQ**********************SAALDIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYAEANQEIIQEQITRVLFERLIVNRPHPWGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVA***********************
***************TSTKFGSALNIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKREIEGNPDFSNKDVGASQPQLVPEVKPAIVSPLGHVDLPLDVASPPNSGGPTHLLSQYAAPLRLSSGTLMEDEKLAALGISDQLPSAQGLF**************STPIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSISSQLRNSLQGLTIASELLEQAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAQQLSLRRKHREGVGSSFFDPNIYAQGSMGVPEALRPKPGHLSVSQQRVYEDFVRLPWQN*******************AAQASAYGLAGGQ*******************************SAGFLSTSLVHIGAADGGILHNSESESVNAAFTPAATELYAADS********************ERIGSSILEPSLQTRDALDKYHIVAQKLDALIGNDAREAEVQGVISEVPEIILRCISRDEAALAVAQKVFKGLYENASNNLHFSAHLAILAAIRDVCKLVVKELTSWVIYSDEERKFNRDITMGLIRSELLNLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVTDESRVVISELHNLVDALAKLAAKPGSPESLQQLIEIVRNPAAN****************************ANREDYNIPESVDPDPVGFPEQVSMLFAEWYQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFFRRLTEVSVAHCLSSEVINPGTLQSPQQSQSLSFLAIDIYAKLMLSILKCCPVEQGSSKIFLLSKILTVTVKFILKDAEEKKASFNPRPYFRLFINWLLDMSSLDPVADGSNFQILSAFANAFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIGNGQKGWPYIQRLLVNLLQFLEPFLRNAELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLPEIRDPPRIFSEVDAALRAKQMRADVDDYLKTGQPGSSFLSELKQKLLLPPSEAASAGTRYNVPLINSLVLYVGMQAIHQ************NNSSLTAFLVSAALDIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYAEANQEIIQEQITRVLFERLIVNRPHPWGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVARSCGGLKPVDDSMVSGWVPDNTH
***********************LNIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKR*************************************************************************************************PFSVSQLSTPIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSISSQLRNSLQGLTIASELLEQAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAQQLSLRRKHREGVGSSFFDPNIYAQGSMGVPEALRPKPGHLSVSQQRVYEDFVRLPWQNQ****************************************************************************************************************P***SQSLPSTAAPERIGSSILEPSLQTRDALDKYHIVAQKLDALIGNDAREAEVQGVISEVPEIILRCISRDEAALAVAQKVFKGLYENASNNLHFSAHLAILAAIRDVCKLVVKELTSWVIYSDEERKFNRDITMGLIRSELLNLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVTDESRVVISELHNLVDALAKLAAKPGSPESLQQLIEIVRNPAANANASSGATTAKDDKA*************************DPDPVGFPEQVSMLFAEWYQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFFRRLTEVSVAHCLSSEVIN******PQQSQSLSFLAIDIYAKLMLSILKCCPVEQGSSKIFLLSKILTVTVKFILKDAEEKKASFNPRPYFRLFINWLLDMSSLDPVADGSNFQILSAFANAFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIGNGQKGWPYIQRLLVNLLQFLEPFLRNAELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLPEIRDPPRIFSEVDAALRAKQMRADVDDYLKTGQPGSSFLSELKQKLLLPPSEAASAGTRYNVPLINSLVLYVGMQAIHQLQTRTS*********SLTAFLVSAALDIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYAEANQEIIQEQITRVLFERLIVNRPHPWGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVARSCGGL*****************
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MLSISSGFARPSRGVTSTKFGSALNIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKREIEGNPDFSNKDVGASQPQLVPEVKPAIVSPLGHVDLPLDVASPPNSGGPTHLLSQYAAPLRLSSGTLMEDEKLAALGISDQLPSAQGLFQASQSQSPFSVSQLSTPIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSISSQLRNSLQGLTIASELLEQAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAQQLSLRRKHREGVGSSFFDPNIYAQGSMGVPEALRPKPGHLSVSQQRVYEDFVRLPWQNQSSQGSHAMSAGSLTSSGDAAQASAYGLAGGQGNQGYSSSAGSTGFDAVSRPSDVASGTTESTSAGFLSTSLVHIGAADGGILHNSESESVNAAFTPAATELYAADSTEPVKEPGASSQSLPSTAAPERIGSSILEPSLQTRDALDKYHIVAQKLDALIGNDAREAEVQGVISEVPEIILRCISRDEAALAVAQKVFKGLYENASNNLHFSAHLAILAAIRDVCKLVVKELTSWVIYSDEERKFNRDITMGLIRSELLNLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVTDESRVVISELHNLVDALAKLAAKPGSPESLQQLIEIVRNPAANANASSGATTAKDDKARQSKDKKAYSHTTANREDYNIPESVDPDPVGFPEQVSMLFAEWYQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFFRRLTEVSVAHCLSSEVINPGTLQSPQQSQSLSFLAIDIYAKLMLSILKCCPVEQGSSKIFLLSKILTVTVKFILKDAEEKKASFNPRPYFRLFINWLLDMSSLDPVADGSNFQILSAFANAFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIGNGQKGWPYIQRLLVNLLQFLEPFLRNAELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLPEIRDPPRIFSEVDAALRAKQMRADVDDYLKTGQPGSSFLSELKQKLLLPPSEAASAGTRYNVPLINSLVLYVGMQAIHQLQTRTSHAQSTGNNSSLTAFLVSAALDIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYAEANQEIIQEQITRVLFERLIVNRPHPWGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVARSCGGLKPVDDSMVSGWVPDNTH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1498 2.2.26 [Sep-21-2011]
A5YKK62376 CCR4-NOT transcription co yes no 0.482 0.304 0.437 1e-173
Q6ZQ082375 CCR4-NOT transcription co yes no 0.482 0.304 0.436 1e-173
A0JP852388 CCR4-NOT transcription co yes no 0.461 0.289 0.447 1e-173
A1A5H62374 CCR4-NOT transcription co yes no 0.485 0.306 0.433 1e-172
P871122100 General negative regulato yes no 0.618 0.440 0.288 2e-99
P256552108 General negative regulato yes no 0.443 0.314 0.262 6e-74
>sp|A5YKK6|CNOT1_HUMAN CCR4-NOT transcription complex subunit 1 OS=Homo sapiens GN=CNOT1 PE=1 SV=2 Back     alignment and function desciption
 Score =  612 bits (1577), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 344/786 (43%), Positives = 478/786 (60%), Gaps = 63/786 (8%)

Query: 730  QKLDALIGNDAREAEVQGVISEVPEIILRCISRDE-AALAVAQKVFKGLYENASNN---- 784
            Q L A+    A   + Q + S +  ++L   SRD  AAL + QK  +GL +  S      
Sbjct: 1621 QHLHAIPPTLAMNPQAQALRSLLEVVVLSRNSRDAIAALGLLQKAVEGLLDATSGADADL 1680

Query: 785  --LHFSAHLAILAAIRD-------VCKLVVKELTSWVIYSDEERKFNRDITMGLIRSELL 835
               +   HL +L A++D        C    K++T  +I   +E K+N +    LIR+ L+
Sbjct: 1681 LLRYRECHLLVLKALQDGRAYGSPWCN---KQITRCLIECRDEYKYNVEAVELLIRNHLV 1737

Query: 836  NLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVTDE---SRVVISELHNLVDALAKLAA- 891
            N+ +Y++H+A+ ++ G N  A  FA+ L++ L+ DE   + V  ++L + ++ L ++ A 
Sbjct: 1738 NMQQYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHVTEADLFHTIETLMRINAH 1797

Query: 892  -KPGSPESLQQLIEIVRNPAANANASSGATTAKDDKARQSKDKKAYSHTTANREDYNIPE 950
             +  +PE L QL+E+VR+             A  D+A    +   +S  +   E Y+   
Sbjct: 1798 SRGNAPEGLPQLMEVVRS----------NYEAMIDRAHGGPNFMMHSGISQASE-YD--- 1843

Query: 951  SVDPDPVGFPEQVSMLFAEW---YQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFF 1007
                DP G  E+   L  EW   Y        +  A + +V Q+HQ G+LK DD+  RFF
Sbjct: 1844 ----DPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFF 1899

Query: 1008 RRLTEVSVA---HCLSSEVINPGTLQSPQQSQSLSFLAIDIYAKLMLSILKCCPVEQGS- 1063
            R  TE+ V       + +  NP    +P   ++  +  +D + +L+  ++K       + 
Sbjct: 1900 RLCTEMCVEISYRAQAEQQHNPAA--NPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTV 1957

Query: 1064 SKIFLLSKILTVTVKFILKDAEEKKASFNPRPYFRLFINWLLDMSSLDPVADGSNFQILS 1123
            +KI LL+K+L + V  +L+D + +++ F   PY R+FI  LL++++ + V +  NFQ L+
Sbjct: 1958 TKINLLNKVLGIVVGVLLQDHDVRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLT 2017

Query: 1124 AFANAFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIGN-GQKGWPYIQRLLVNLLQFLEP 1182
            AF N FH+L+P K P F +AWLEL+SHR F+ ++L     QKGWP   +LL++L ++L P
Sbjct: 2018 AFCNTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAP 2077

Query: 1183 FLRNAELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFP 1242
            FLRN EL  P++ LYKGTLRVLLVLLHDFPEFLCDYH+ FCDVIPP+CIQ+RN+ILSAFP
Sbjct: 2078 FLRNVELTKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFP 2137

Query: 1243 RNMRLPDPSTPNLKIDLLPEIRDPPRIFSEVDAALRAKQMRADVDDYLKTGQPGSSFLSE 1302
            RNMRLPDP TPNLK+D+L EI   PRI +     +   Q + D+D YLKT  P  +FLS+
Sbjct: 2138 RNMRLPDPFTPNLKVDMLSEINIAPRILTNFTGVM-PPQFKKDLDSYLKTRSP-VTFLSD 2195

Query: 1303 LKQKLLLPPSEAASAGTRYNVPLINSLVLYVGMQAIHQLQTRTSHAQSTGNNSSLTAFLV 1362
            L+  L +    +   G RYN+ LIN+LVLYVG QAI       +H  + G+  S++    
Sbjct: 2196 LRSNLQV----SNEPGNRYNLQLINALVLYVGTQAI-------AHIHNKGSTPSMSTITH 2244

Query: 1363 SAALDIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYAEANQEIIQEQI 1422
            SA +DIFQ L  DLDTEGRYLFLNA ANQLRYPN+HTHYFS  +LYL+AEAN E IQEQI
Sbjct: 2245 SAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQI 2304

Query: 1423 TRVLFERLIVNRPHPWGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVARSCGGLK 1482
            TRVL ERLIVNRPHPWGLLITFIELIKNP + FWN  F+ CAPEIEKLF+SVA+ C G K
Sbjct: 2305 TRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWNHEFVHCAPEIEKLFQSVAQCCMGQK 2364

Query: 1483 PVDDSM 1488
                 M
Sbjct: 2365 QAQQVM 2370
Belongs to the CCR4-NOT complex that functions as general transcription regulation complex. Acts as a transcriptional repressor. Represses the ligand-dependent transcriptional activation by nuclear receptors.
Homo sapiens (taxid: 9606)
>sp|Q6ZQ08|CNOT1_MOUSE CCR4-NOT transcription complex subunit 1 OS=Mus musculus GN=Cnot1 PE=1 SV=2 Back     alignment and function description
>sp|A0JP85|CNOT1_XENTR CCR4-NOT transcription complex subunit 1 OS=Xenopus tropicalis GN=cnot1 PE=2 SV=1 Back     alignment and function description
>sp|A1A5H6|CNOT1_DANRE CCR4-NOT transcription complex subunit 1 OS=Danio rerio GN=cnot1 PE=2 SV=1 Back     alignment and function description
>sp|P87112|NOT1_SCHPO General negative regulator of transcription subunit 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=not1 PE=1 SV=1 Back     alignment and function description
>sp|P25655|NOT1_YEAST General negative regulator of transcription subunit 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDC39 PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1498
449433000 2427 PREDICTED: LOW QUALITY PROTEIN: CCR4-NOT 0.988 0.610 0.766 0.0
356523091 2424 PREDICTED: CCR4-NOT transcription comple 0.982 0.607 0.784 0.0
255541160 2330 ccr4-not transcription complex, putative 0.949 0.610 0.778 0.0
297734545 2452 unnamed protein product [Vitis vinifera] 0.995 0.608 0.743 0.0
357512789 2410 CCR4-NOT transcription complex subunit [ 0.977 0.607 0.757 0.0
357512787 2418 CCR4-NOT transcription complex subunit [ 0.977 0.605 0.753 0.0
356504613 2327 PREDICTED: CCR4-NOT transcription comple 0.935 0.602 0.744 0.0
334182230 2377 CCR4-NOT transcription complex subunit 1 0.979 0.617 0.721 0.0
334182228 2431 CCR4-NOT transcription complex subunit 1 0.979 0.603 0.721 0.0
297842912 2379 hypothetical protein ARALYDRAFT_887229 [ 0.979 0.617 0.717 0.0
>gi|449433000|ref|XP_004134286.1| PREDICTED: LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 1-like [Cucumis sativus] Back     alignment and taxonomy information
 Score = 2369 bits (6140), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1177/1536 (76%), Positives = 1303/1536 (84%), Gaps = 55/1536 (3%)

Query: 2    LSISSGFARPSRGVTSTKFGSALNIETLVAAAERRETPIEAPASEVQDKISFIINNISAL 61
            L+ S GF RPSRG  ST+FGSALNIETLVAAAE+RETPIEAP S+VQDKISF+INNIS  
Sbjct: 908  LAPSPGFVRPSRGAASTRFGSALNIETLVAAAEKRETPIEAPGSDVQDKISFMINNISLA 967

Query: 62   NVEAKAKEFTEILKEQYYPWFAQYMVMKR-----------------------ASIEPNFH 98
            N+EAKAKEFTEILKEQ+YPWFAQYMVMKR                       ASIEPNFH
Sbjct: 968  NLEAKAKEFTEILKEQFYPWFAQYMVMKRKICLEKILVNTQVINXHPTSYYRASIEPNFH 1027

Query: 99   DLYLKFLDKVNSKALNREIVQATYENCKV------------LLGSELIKSSSEERSLLKN 146
            DLYLKFLD+VNSKAL++EIVQATYENCKV            LLGS+LIKSSSEERSLLKN
Sbjct: 1028 DLYLKFLDRVNSKALSKEIVQATYENCKVFVSSWIMCSLQVLLGSDLIKSSSEERSLLKN 1087

Query: 147  LGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPN 206
            LGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPN
Sbjct: 1088 LGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPN 1147

Query: 207  PWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKREIEGNPDF 266
            PWTM ILGLLAEIYSMPNLKMNLKFDIEVLFKNL VDMK+ITPTSLLKDRKREI+GNPDF
Sbjct: 1148 PWTMGILGLLAEIYSMPNLKMNLKFDIEVLFKNLSVDMKEITPTSLLKDRKREIDGNPDF 1207

Query: 267  SNKDVGASQPQLVPEVKPAIVSPLGHVDLPLDVASPPNSGGPTHLLSQYAAPLRLSSGTL 326
            SNKDVGASQ Q+V EVK  I+S L  V+LPL+VA+P NSG  THLLSQYA PL LSSGTL
Sbjct: 1208 SNKDVGASQTQMVAEVKSGIMSSLNQVELPLEVATPSNSGNHTHLLSQYATPLHLSSGTL 1267

Query: 327  MEDEKLAALGISDQLPSAQGLFQASQSQSPFSVSQLSTPIPNIGTHVIINQKLTALGLHL 386
            MEDEKL+ALG+SDQLP+AQGL QA+ S SPFS +QL   IPNIG+ V+INQKL +LGLH+
Sbjct: 1268 MEDEKLSALGLSDQLPTAQGLLQATPSPSPFSTNQLPAGIPNIGSLVVINQKLNSLGLHI 1327

Query: 387  HFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVAS 446
            HFQR VPIAMDRA+KEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRI+NAAHLMVAS
Sbjct: 1328 HFQRAVPIAMDRAVKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIFNAAHLMVAS 1387

Query: 447  LAGSLAHVTCKEPLRGSISSQLRNSLQGLTIASELLEQAVQLVTNDNLDLGCAVIEQAAT 506
            LAG LAHVTCKEPLRGSISSQLR+SLQ L +AS+LLEQAVQLVTNDNLDLGCA+IEQAAT
Sbjct: 1388 LAGCLAHVTCKEPLRGSISSQLRSSLQNLGVASDLLEQAVQLVTNDNLDLGCAIIEQAAT 1447

Query: 507  DKAIQTIDGEIAQQLSLRRKHREGVGSSFFDPNIYAQGSMGV-PEALRPKPGHLSVSQQR 565
            DKAIQTIDGEIAQQLSLRRKHREGV ++FFD  +YAQG +GV PEALRPKPGHLSVSQQR
Sbjct: 1448 DKAIQTIDGEIAQQLSLRRKHREGVNTTFFDTGMYAQGPLGVVPEALRPKPGHLSVSQQR 1507

Query: 566  VYEDFVRLPWQNQSSQGSHAMSAGSLTSSGDAAQASAYGLAGGQGNQGYSSSAGSTGFDA 625
            VYEDFVRLP QNQ+SQ   A S GS  ++     ++ +GL+ GQ N GY+S    TG + 
Sbjct: 1508 VYEDFVRLPLQNQNSQA--AQSTGSSVTASGTGLSNQFGLSSGQLNSGYTSGL-VTGLEG 1564

Query: 626  VSRPSDVASGTTESTSAGFLSTSLVHIGAADGGILHNSESESVNAAFTPAAT--ELYAAD 683
            VSR  D A    E +S   LS    HI AADG  +   E++ V  +F  AA+  EL+A D
Sbjct: 1565 VSRSVDDA---VEPSSVPQLSAPSGHI-AADGVGIRGPENDLVVPSFPSAASAPELHAVD 1620

Query: 684  STEPVKEPGASSQSLPSTAAPERIGSSILEPSLQTRDALDKYHIVAQKLDALIGNDAREA 743
            +++ +KEPG+S+Q LPS    +R+ ++I EPSL TRDALDK+ +++QKL+AL+ ++AREA
Sbjct: 1621 ASDSLKEPGSSTQPLPSPITTDRLATTISEPSLTTRDALDKFQVISQKLEALVSSEAREA 1680

Query: 744  EVQGVISEVPEIILRCISRDEAALAVAQKVFKGLYENASNNLHFSAHLAILAAIRDVCKL 803
            E QGVI+EVPEIILRCISRDEAALAVAQKVFK LY+NASN  H  AHLAIL AIRDVCKL
Sbjct: 1681 EFQGVIAEVPEIILRCISRDEAALAVAQKVFKVLYDNASNTFHVGAHLAILIAIRDVCKL 1740

Query: 804  VVKELTSWVIYSDEERKFNRDITMGLIRSELLNLAEYNVHMAKLIDGGRNKAATEFAISL 863
            VVKELTSWVIYS+EERK+N+DIT+GLIRSELLNLAEYNVHMAKLIDGGRNKAATEFAISL
Sbjct: 1741 VVKELTSWVIYSEEERKYNKDITLGLIRSELLNLAEYNVHMAKLIDGGRNKAATEFAISL 1800

Query: 864  LQTLVTDESRVVISELHNLVDALAKLAAKPGSPESLQQLIEIVRNPAANANASSGATTAK 923
            LQTLV DES V ISELHNLVDALAK+AAKPGS E LQ L+EI++NPA +  A SG    K
Sbjct: 1801 LQTLVVDESSV-ISELHNLVDALAKVAAKPGSSEPLQHLVEIIKNPATSVAAISGVNVGK 1859

Query: 924  DDKARQSKDKKAYSHTTANREDYNIPESVDPDPVGFPEQVSMLFAEWYQICELPGSNDAA 983
            DDKAR ++DKKA   +  NRED +I ES   DP GF +QVS+LFAEWY+ICELPG+N+AA
Sbjct: 1860 DDKARLARDKKAPVPSITNREDSSILES--EDPAGFRDQVSILFAEWYRICELPGANEAA 1917

Query: 984  CTRYVLQLHQNGLLKGDDMTDRFFRRLTEVSVAHCLSSEVINPGTLQS-PQQSQSLSFLA 1042
               ++LQLHQNGLLKGDDMTDRFFR LTE+SVAHCLSSEVIN G LQS PQQ Q+LSFLA
Sbjct: 1918 FNHFILQLHQNGLLKGDDMTDRFFRLLTEISVAHCLSSEVINSGALQSSPQQIQNLSFLA 1977

Query: 1043 IDIYAKLMLSILKCCPVEQGSSKIFLLSKILTVTVKFILKDAEEKKASFNPRPYFRLFIN 1102
            IDIYAKL+ SILK      GS K  LLS+IL VTV+FI KDAEEKK SFNPRPYFRLFIN
Sbjct: 1978 IDIYAKLVFSILK------GSGKTALLSRILAVTVRFIQKDAEEKKGSFNPRPYFRLFIN 2031

Query: 1103 WLLDMSSLDPVADGSNFQILSAFANAFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIGNG 1162
            WL D+ SL+P+ DG+NFQIL+AFANAFH L PLK+PAFS+AWLELVSHRSFMPK+L GN 
Sbjct: 2032 WLPDLGSLEPIVDGANFQILTAFANAFHALHPLKIPAFSYAWLELVSHRSFMPKMLTGNS 2091

Query: 1163 QKGWPYIQRLLVNLLQFLEPFLRNAELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHFTF 1222
            QKGWPYIQRLLV++ QF+EPFLRNAELG PV FLYKGTLRVLLVLLHDFPEFLCDYHFTF
Sbjct: 2092 QKGWPYIQRLLVDMFQFMEPFLRNAELGPPVHFLYKGTLRVLLVLLHDFPEFLCDYHFTF 2151

Query: 1223 CDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLPEIRDPPRIFSEVDAALRAKQM 1282
            CDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLL EI   PRI SEVD AL+ KQM
Sbjct: 2152 CDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLAEINQSPRILSEVDGALKLKQM 2211

Query: 1283 RADVDDYLKTGQPGSSFLSELKQKLLLPPSEAASAGTRYNVPLINSLVLYVGMQAIHQLQ 1342
            +ADVD+YLKT Q GSSFL++LKQKLLLPPSEAASAGTRYNVPLINSLVLYVGMQAI QLQ
Sbjct: 2212 KADVDEYLKTRQQGSSFLADLKQKLLLPPSEAASAGTRYNVPLINSLVLYVGMQAIQQLQ 2271

Query: 1343 TRTSHAQSTGNNSSLTAFLVSAALDIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYF 1402
             R+ HAQS+ N  +L  FLV AALDIFQTLI +LDTEGRYLFLNA ANQLRYPN HTHYF
Sbjct: 2272 ARSPHAQSSANTVTLAVFLVGAALDIFQTLIVELDTEGRYLFLNAVANQLRYPNTHTHYF 2331

Query: 1403 SFVLLYLYAEANQEIIQEQITRVLFERLIVNRPHPWGLLITFIELIKNPRYNFWNQSFIR 1462
            SFVLLYL+AE+ QEIIQEQITRVL ERLIVNRPHPWGLLITFIELIKNPRYNFWN+SFIR
Sbjct: 2332 SFVLLYLFAESTQEIIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPRYNFWNRSFIR 2391

Query: 1463 CAPEIEKLFESVARSCGGLKPVDDSMVSGWVPDNTH 1498
            CAP+IE+LFESV+RSCGG K  D++MV  WVPD  H
Sbjct: 2392 CAPDIERLFESVSRSCGGPKSADENMVQNWVPDTAH 2427

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356523091|ref|XP_003530175.1| PREDICTED: CCR4-NOT transcription complex subunit 1-like [Glycine max] Back     alignment and taxonomy information
>gi|255541160|ref|XP_002511644.1| ccr4-not transcription complex, putative [Ricinus communis] gi|223548824|gb|EEF50313.1| ccr4-not transcription complex, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|297734545|emb|CBI16596.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|357512789|ref|XP_003626683.1| CCR4-NOT transcription complex subunit [Medicago truncatula] gi|355520705|gb|AET01159.1| CCR4-NOT transcription complex subunit [Medicago truncatula] Back     alignment and taxonomy information
>gi|357512787|ref|XP_003626682.1| CCR4-NOT transcription complex subunit [Medicago truncatula] gi|355520704|gb|AET01158.1| CCR4-NOT transcription complex subunit [Medicago truncatula] Back     alignment and taxonomy information
>gi|356504613|ref|XP_003521090.1| PREDICTED: CCR4-NOT transcription complex subunit 1-like [Glycine max] Back     alignment and taxonomy information
>gi|334182230|ref|NP_001184889.1| CCR4-NOT transcription complex subunit 1 [Arabidopsis thaliana] gi|332189257|gb|AEE27378.1| CCR4-NOT transcription complex subunit 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|334182228|ref|NP_171710.4| CCR4-NOT transcription complex subunit 1 [Arabidopsis thaliana] gi|332189256|gb|AEE27377.1| CCR4-NOT transcription complex subunit 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297842912|ref|XP_002889337.1| hypothetical protein ARALYDRAFT_887229 [Arabidopsis lyrata subsp. lyrata] gi|297335179|gb|EFH65596.1| hypothetical protein ARALYDRAFT_887229 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1498
DICTYBASE|DDB_G02760292526 DDB_G0276029 "putative CCR4-NO 0.267 0.158 0.585 1.2e-246
MGI|MGI:24424022375 Cnot1 "CCR4-NOT transcription 0.346 0.218 0.514 1.2e-233
UNIPROTKB|G3V7M02376 Cnot1 "RCG39079" [Rattus norve 0.346 0.218 0.514 1.2e-233
UNIPROTKB|A5YKK62376 CNOT1 "CCR4-NOT transcription 0.346 0.218 0.514 1.9e-233
UNIPROTKB|F1MHU92371 CNOT1 "Uncharacterized protein 0.346 0.218 0.514 2.4e-233
UNIPROTKB|F1RFU32375 CNOT1 "Uncharacterized protein 0.346 0.218 0.514 3.1e-233
ZFIN|ZDB-GENE-040915-12375 cnot1 "CCR4-NOT transcription 0.346 0.218 0.513 3.1e-228
UNIPROTKB|E1BXD42129 LOC100858397 "Uncharacterized 0.346 0.243 0.516 3.1e-225
FB|FBgn00854362505 Not1 "Not1" [Drosophila melano 0.526 0.314 0.393 2e-220
WB|WBGene000028452641 let-711 [Caenorhabditis elegan 0.433 0.245 0.365 2.7e-169
DICTYBASE|DDB_G0276029 DDB_G0276029 "putative CCR4-NOT complex subunit 1" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
 Score = 1230 (438.0 bits), Expect = 1.2e-246, Sum P(4) = 1.2e-246
 Identities = 244/417 (58%), Positives = 305/417 (73%)

Query:  1064 SKIFLLSKILTVTVKFILKDAEEKKASFNPRPYFRLFINWLLDMSSLDPVADGSNFQILS 1123
             +K+ +L+K+L+V +K + KD E   + FN RPY R+F N L+D++S DP+ +  +  IL 
Sbjct:  2115 TKLNMLTKVLSVLIKILTKDYENNPSRFNQRPYLRIFENLLVDLTSPDPILEHVSNHILF 2174

Query:  1124 AFANAFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIGNGQKGWPYIQRLLVNLLQFLEPF 1183
              F NA   LQP K P F FAWL+L+SH+SFMPKLLI   QK W     LLV   +FLEPF
Sbjct:  2175 CFVNALATLQPQKYPGFCFAWLDLLSHKSFMPKLLIRQ-QKQW--FHALLVQHFKFLEPF 2231

Query:  1184 LRNAELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPR 1243
             LR  +L  PVR LYKGTL+VLL+LLHDFPEFLC+YHF+ CDVIP +CIQ+RN+ILSAFPR
Sbjct:  2232 LRGGDLSEPVRVLYKGTLKVLLLLLHDFPEFLCEYHFSLCDVIPNTCIQLRNLILSAFPR 2291

Query:  1244 NMRLPDPSTPNLKIDLLPEIRDPPRIFSEVDAALRAKQMRADVDDYLKTGQPGSSFLSEL 1303
             NMRLPDP TPNLKID+LP+I  PP+I S   A+L  K ++ ++D+Y K   P  SFL +L
Sbjct:  2292 NMRLPDPFTPNLKIDMLPDINQPPKISSNFTASL--KGLKIEIDNYFKNRGP-YSFLLDL 2348

Query:  1304 KQK--LLLPPSEAASAGTRYNVPLINSLVLYVGMQAIHQLQTRTSHAQSTGNNSSLTAFL 1361
             K K  LL    E  +AGT+YNVPLINSLVLY+G  AI Q+Q ++  A +           
Sbjct:  2349 KNKHLLLTDKEEILAAGTKYNVPLINSLVLYIGTLAIPQIQRKSGVAPTPSQ-------- 2400

Query:  1362 VSAALDIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYAEANQEIIQEQ 1421
              SA +DIF  L  DLD+EGRY+F NA ANQLRYPNNHTHY S V+L+L++E+ Q+II+EQ
Sbjct:  2401 -SAPMDIFHRLALDLDSEGRYIFFNAIANQLRYPNNHTHYLSCVILFLFSESGQDIIKEQ 2459

Query:  1422 ITRVLFERLIVNRPHPWGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVARSC 1478
             ITRVL ERLI N+PHPWGLLITFIELIKN RYNFW+  F + APEI +LF+SVA+SC
Sbjct:  2460 ITRVLLERLISNKPHPWGLLITFIELIKNLRYNFWSHGFTKVAPEIAQLFDSVAKSC 2516
GO:0051726 "regulation of cell cycle" evidence=ISS
GO:0030015 "CCR4-NOT core complex" evidence=ISS
GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=ISS
GO:0005737 "cytoplasm" evidence=ISS
GO:0005634 "nucleus" evidence=ISS
GO:0000288 "nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay" evidence=ISS
GO:0000175 "3'-5'-exoribonuclease activity" evidence=ISS
GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISS
MGI|MGI:2442402 Cnot1 "CCR4-NOT transcription complex, subunit 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|G3V7M0 Cnot1 "RCG39079" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|A5YKK6 CNOT1 "CCR4-NOT transcription complex subunit 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1MHU9 CNOT1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1RFU3 CNOT1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040915-1 cnot1 "CCR4-NOT transcription complex, subunit 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E1BXD4 LOC100858397 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
FB|FBgn0085436 Not1 "Not1" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
WB|WBGene00002845 let-711 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1498
pfam04054375 pfam04054, Not1, CCR4-Not complex component, Not1 0.0
COG51032005 COG5103, CDC39, Cell division control protein, neg 7e-89
pfam12842147 pfam12842, DUF3819, Domain of unknown function (DU 4e-64
COG51032005 COG5103, CDC39, Cell division control protein, neg 9e-47
COG51032005 COG5103, CDC39, Cell division control protein, neg 6e-35
>gnl|CDD|217865 pfam04054, Not1, CCR4-Not complex component, Not1 Back     alignment and domain information 
 Score =  557 bits (1437), Expect = 0.0
 Identities = 201/385 (52%), Positives = 258/385 (67%), Gaps = 19/385 (4%)

Query: 1102 NWLLDMSSLDPVADGSNF-QILSAFANAFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIG 1160
            + L +++ LD +       Q   AFA   H LQP+K P F FAWLEL+SHR F+P++L  
Sbjct: 1    SLLYELNRLDSLESKELDSQFYLAFAEYLHSLQPIKYPGFVFAWLELISHRMFLPRMLRL 60

Query: 1161 NGQKGWPYIQRLLVNLLQFLEPFLRNAELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHF 1220
              QKGWP   +LL++LL+FL+ FL+NA L   V+ LYKGTLR+LLVLLHDFPEFL +YH+
Sbjct: 61   PNQKGWPLYVKLLIDLLKFLDEFLKNANLSDAVKVLYKGTLRILLVLLHDFPEFLIEYHY 120

Query: 1221 TFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLPEIRDPPRIFSEVDAALRAK 1280
              CD IPP+CIQ+RN+ILSAFP+NM+LPDP TP LK+D LPEI++ P+I  +  A L++ 
Sbjct: 121  QLCDAIPPNCIQLRNLILSAFPKNMKLPDPFTPGLKVDRLPEIKEAPKILYDPVADLQSA 180

Query: 1281 QMRADVDDYLKTGQPGSSFLSELKQKLLLPPSEAAS----AGTRYNVPLINSLVLYVGMQ 1336
             ++  VD+YL+   P  S L  +   L L   E          + NV LIN+LVL+VG+Q
Sbjct: 181  GLKKPVDNYLRIR-PSESLLRTICNGLYLSEDEQTVGIGYDPVKVNVKLINALVLHVGIQ 239

Query: 1337 AIHQLQTRTSHAQSTGNNSSLTAFLVSAALDIFQTLIQDLDTEGRYLFLNAAANQLRYPN 1396
            A+               N++      S  + +   L  +LD EGRY  LNA ANQLRYPN
Sbjct: 240  AV-------LEILKKSQNANF--NTKSPHMALLSNLANELDPEGRYYLLNAIANQLRYPN 290

Query: 1397 NHTHYFSFVLLYLY----AEANQEIIQEQITRVLFERLIVNRPHPWGLLITFIELIKNPR 1452
            +HTHYFS V+L+L+     E+ +E IQEQITRVL ERLIVN+PHPWGLLITFIELIKNP 
Sbjct: 291  SHTHYFSCVILHLFGSDEWESQKEDIQEQITRVLLERLIVNKPHPWGLLITFIELIKNPD 350

Query: 1453 YNFWNQSFIRCAPEIEKLFESVARS 1477
            Y FW   FI+ APEIEKLF+S+ARS
Sbjct: 351  YKFWELPFIKSAPEIEKLFDSLARS 375

The Ccr4-Not complex is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID. Length = 375
>gnl|CDD|227434 COG5103, CDC39, Cell division control protein, negative regulator of transcription [Cell division and chromosome partitioning / Transcription] Back     alignment and domain information
>gnl|CDD|221802 pfam12842, DUF3819, Domain of unknown function (DUF3819) Back     alignment and domain information
>gnl|CDD|227434 COG5103, CDC39, Cell division control protein, negative regulator of transcription [Cell division and chromosome partitioning / Transcription] Back     alignment and domain information
>gnl|CDD|227434 COG5103, CDC39, Cell division control protein, negative regulator of transcription [Cell division and chromosome partitioning / Transcription] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1498
KOG18311591 consensus Negative regulator of transcription [Tra 100.0
COG51032005 CDC39 Cell division control protein, negative regu 100.0
PF04054379 Not1: CCR4-Not complex component, Not1; InterPro: 100.0
PF12842147 DUF3819: Domain of unknown function (DUF3819); Int 100.0
KOG18311591 consensus Negative regulator of transcription [Tra 97.74
smart00543200 MIF4G Middle domain of eukaryotic initiation facto 94.56
PF02854209 MIF4G: MIF4G domain; InterPro: IPR003890 This entr 91.97
KOG1467556 consensus Translation initiation factor 2B, delta 83.84
>KOG1831 consensus Negative regulator of transcription [Transcription] Back     alignment and domain information 
Probab=100.00  E-value=6.4e-244  Score=2213.25  Aligned_cols=1192  Identities=39%  Similarity=0.622  Sum_probs=959.4

Q ss_pred             CCCCCCCHHhhhhhhhhcccCChhhHHHHHHHHHHHhhhcChhHHHHHHHhhhcccCcchhHHHHHHHHHhCChhHHHHH
Q 000444           38 TPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREI  117 (1498)
Q Consensus        38 ~~~e~P~e~v~dki~Fi~NNls~~Nl~~K~~El~~~l~~~y~~WFa~YLV~~Ras~EpN~H~lY~~~l~~l~~~~L~~~i  117 (1498)
                      ++-+.|||+|+|||+|++||+|+.|+.+|++|+|++|+|+||+|||+|||.||||+|+|||+||.+|+++|++.      
T Consensus       370 ~n~~~~~e~v~dkilF~lNNlsq~N~~qKvdevk~~ltp~y~~Wfs~YiV~qR~S~E~Nf~~LYskFi~ai~n~------  443 (1591)
T KOG1831|consen  370 KNAEGPPEDVVDKILFPLNNLSQLNFNQKVDEVKEILTPEYYPWFSQYIVTQRVSKEINFHELYSKFISAIKNS------  443 (1591)
T ss_pred             ccccCCchhhhhhheeeechHhhhhhHHHHHHHHHHcChhhHHHHHHHHhhhhhhcccchHHHHHHHHHHHhCc------
Confidence            34568999999999999999999999999999999999999999999999999999999999999999999998      


Q ss_pred             HHHHHHHHHHHhcccccccChHHHHHHHHHHhhhhhhhhhcCccccccCCChhhHHHHHHhcCceeEEechhhhcccccc
Q 000444          118 VQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQ  197 (1498)
Q Consensus       118 l~~T~~~i~~LL~s~~~~~~s~eRs~LKNLG~WLG~iTlarnkPi~~k~l~~K~LLleaY~~g~L~~viPFVcKvLe~~~  197 (1498)
                        +|                -+||++|||||+|||.|||||||||++.++|||+||+|||++|||..|+|||||||+.|.
T Consensus       444 --~t----------------~~dk~~LKNLgsWLG~iTl~rNkPI~~l~l~~kslLlEaY~sg~ll~VvPFVaKIL~~as  505 (1591)
T KOG1831|consen  444 --VT----------------ESDKRLLKNLGSWLGEITLGRNKPIKELDLDFKSLLLEAYGSGRLLPVVPFVAKILEGAS  505 (1591)
T ss_pred             --cc----------------hhHHHHHHHHHHHHHHHHHhcCCchHHhhhhHHHHHHHHhccCceeecchHHHHHHHhhh
Confidence              22                189999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCccccCCChhHHHHHHHHHHHhcCCCccchhHHHHHHHHhhcCCCccccccccccccchhhhcCCCCCCCCCcCCCCCC
Q 000444          198 SSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKREIEGNPDFSNKDVGASQPQ  277 (1498)
Q Consensus       198 ~SkvFkPPNPW~m~IL~lL~Ely~~~~lKlnLkFEIEvL~K~L~l~~~~i~ps~~L~~r~~~~~~~~d~~~~~~~~~q~~  277 (1498)
                      +|+|||||||||||||++|+|||+.||||+|||||||||||+||+++++++|++++++..+. ++...           .
T Consensus       506 ksrIFkpPnpW~~gIlklL~ELh~e~d~klnLkFEIEVLlkslN~~l~~le~~~~lnn~~~i-~~~L~-----------~  573 (1591)
T KOG1831|consen  506 KSRIFKPPNPWTMGILKLLAELHQEADLKLNLKFEIEVLLKSLNVILSELEPSETLNNIIRI-KKQLV-----------L  573 (1591)
T ss_pred             hccccCCCCchHHHHHHHHHHhcccccceeeeeeeeeehhccccchHhhcchhhHHhhHHhH-HHHHc-----------c
Confidence            99999999999999999999999999999999999999999999999999999999984431 11110           0


Q ss_pred             ccCCCCccccCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccchhHHHHhhccCCCCCCcccccccccCCCCCC
Q 000444          278 LVPEVKPAIVSPLGHVDLPLDVASPPNSGGPTHLLSQYAAPLRLSSGTLMEDEKLAALGISDQLPSAQGLFQASQSQSPF  357 (1498)
Q Consensus       278 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  357 (1498)
                      +.++..       +..+++                                           .   .|...+.+  ...|
T Consensus       574 ~~~e~h-------~~~~~~-------------------------------------------~---~q~~~~~~--~~~f  598 (1591)
T KOG1831|consen  574 MKLETH-------QSLELE-------------------------------------------D---IQQVTLGN--TIAF  598 (1591)
T ss_pred             CChhhc-------cccccC-------------------------------------------c---hhcccccC--Cccc
Confidence            000000       000000                                           0   00000000  1114


Q ss_pred             ccccccCC-CCCCCceEEecccccccccchhhhhhHHHHHHHHHHhhhhhchhhhHHHHHHHHHHHHhhcccCChhhhHH
Q 000444          358 SVSQLSTP-IPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRI  436 (1498)
Q Consensus       358 s~~~~~~~-ip~l~~~v~in~~l~~f~~~p~LKriV~~Ai~rAIrEII~PVVERSVtIA~iTT~eLV~KDFA~E~DE~km  436 (1498)
                      ++++.+.. ..+...++...|       ||++|++|+.|++++|+|||.||||||+.||++||+.||+||||+|+||+||
T Consensus       599 a~~~~n~~t~~~~i~~l~~~~-------~P~~Kh~~~~Aleqsv~eii~~Vv~rs~~IA~ttTe~lirKDFA~e~~es~l  671 (1591)
T KOG1831|consen  599 AYDARNVSTATEVIKQLDLRP-------HPDIKHRVQEALEQSVVEIIEPVVERSSGIASTTTESLIRKDFALERDESRL  671 (1591)
T ss_pred             eecccccchhhhhhhhccCCC-------CccHHHHHHHHHHHHHHHHHHHHHHHhhceeehhHHHHHHHHHhcccchhHH
Confidence            44444322 122223333333       8999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhHHHchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000444          437 YNAAHLMVASLAGSLAHVTCKEPLRGSISSQLRNSLQGLTIASELLEQAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGE  516 (1498)
Q Consensus       437 r~AAh~Mv~~LAgSLAlVTckEpLr~si~~~lr~~l~~~~~~~~~~e~~i~~~~~dNldLac~~Iekaa~ekA~~eId~~  516 (1498)
                      |.||+.|||+||++||++||||||+++|+++|+..+.+.......+++++..+++||++++|++|||+|+|||++|||.+
T Consensus       672 ~~Aa~~M~r~la~~lAmiTcreplk~am~~nl~~~~~~~l~~~~ai~~a~~t~~~dNv~l~~~~Iek~a~eka~~dI~~~  751 (1591)
T KOG1831|consen  672 RLAASQMVRELAAGLAMITCREPLKVAMSSNLVLAALSLLSLMAAIARAADTLQSDNVELVVKFIEKTAIEKATQDIDSR  751 (1591)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHhhhhHHHHHHHHHHHHHHhhchhhHhhhhHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999876665678899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhcC-CCCCcCcccccccccCCCCCCCCCCCCCChhHHHHhHhhhc-CCCCC-CCCCCCCccccCccCC
Q 000444          517 IAQQLSLRRKHREGV-GSSFFDPNIYAQGSMGVPEALRPKPGHLSVSQQRVYEDFVR-LPWQN-QSSQGSHAMSAGSLTS  593 (1498)
Q Consensus       517 l~~~~~~Rr~hre~~-~~~f~D~~~~s~~~~~LPe~LrlkpgGlt~~Ql~VYEdF~r-~p~~~-~~~~~~~~~~~s~~~~  593 (1498)
                      |++++..|+.||+++ +.||+|.....+. ..||+++|+++||++|+|++|||+|+| +|+.. .++...+..       
T Consensus       752 L~q~~~~Rv~~k~~~~~~~fvD~~~~~~~-~~LP~~vr~~~~~~~~~l~~vYe~F~k~i~~~~~~s~~~~la~-------  823 (1591)
T KOG1831|consen  752 LEQDICGRVFHKENPEVMPFVDLLSAAYS-CTLPEVVRLKIGGLTPQLFRVYEEFPKPIPGFLGNSSRKDLAE-------  823 (1591)
T ss_pred             HHHhhHhheecccCCccccchhhhhhhhh-ccCcHhhhcccCCCCHHHHHHHHHcccccccccccCCCccccc-------
Confidence            999999999999965 8999999875554 449999999999999999999999998 33211 000000000       


Q ss_pred             CCchhhhhhccCCCCCCCCCCCCCCCCCCcccccCCccccCCCCccCcccccccchhcccCCCCCcccccccccccccCC
Q 000444          594 SGDAAQASAYGLAGGQGNQGYSSSAGSTGFDAVSRPSDVASGTTESTSAGFLSTSLVHIGAADGGILHNSESESVNAAFT  673 (1498)
Q Consensus       594 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~qp~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  673 (1498)
                                 .                    .+++.++.+....+..   +.....++.+...      +.+.....+.
T Consensus       824 -----------~--------------------~~~~~dlt~~~~~s~~---~~lv~~ei~~~~~------~~a~~~~i~~  863 (1591)
T KOG1831|consen  824 -----------Y--------------------ITESSDLTQPHVISNA---LDLVVREICGAIV------EKACQTAIQT  863 (1591)
T ss_pred             -----------c--------------------cCCCccccchhhhhHH---HHHHHHHHHHHHH------HHHHHHHHHh
Confidence                       0                    1111111100000000   0000000000000      0000000000


Q ss_pred             hhhhhhhccCCCCCCCCCCCCCCCCCCCcccccccccccccccchhhhHHHHHHHHHHHHHHhhcCCcchhHHHHhhhhH
Q 000444          674 PAATELYAADSTEPVKEPGASSQSLPSTAAPERIGSSILEPSLQTRDALDKYHIVAQKLDALIGNDAREAEVQGVISEVP  753 (1498)
Q Consensus       674 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~le~~~~~~~~l~~l~~~~~~~~~i~~~i~~i~  753 (1498)
                      +    .++..          ++++.   ..|+.+-    .     +   ...+..++.+..++.     ..+.++++..+
T Consensus       864 ~----~l~~~----------a~s~~---~~m~~v~----~-----~---~~~~~~~~~~~~~~a-----r~i~hli~~~V  909 (1591)
T KOG1831|consen  864 G----MLQFK----------AQSVE---KLMEEVP----A-----R---NMVVNLVNSLLLLVA-----RSIEHLISGLV  909 (1591)
T ss_pred             h----hhhhh----------hhcch---hhHHhcc----c-----h---hhhHHHHHHHHHHHH-----HHHHHHHHHHH
Confidence            0    00000          00000   0011110    0     0   000001111110000     01111111111


Q ss_pred             HHHHhhcChhHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHhHH-HHHHHHhhhhccccccccCHHHHHHHHHh
Q 000444          754 EIILRCISRDEAALAVAQKVFKGLYENASNNLHFSAHLAILAAIRDVCKL-VVKELTSWVIYSDEERKFNRDITMGLIRS  832 (1498)
Q Consensus       754 ~~i~~~~~~d~~~l~~aq~vv~~L~~~~~~~l~~ev~~~lL~~L~~l~~~-~~kevt~wl~~s~d~rKfNv~vi~~Lir~  832 (1498)
                      ..              ..+.+...++   .+--.+++..+|+.+|....+ ..+.|+..+..+++++|||++.+..|++.
T Consensus       910 ~~--------------~~~~l~~~~~---~~~I~~i~m~iL~~ic~~~qk~~~~~vs~a~s~~~~~~e~n~~~~~~L~~~  972 (1591)
T KOG1831|consen  910 SY--------------FMKNLELDFS---TEKIFKIIMEILDNICRFIQKAGVRKVSEAISSSRSSLEYNIEKAEHLILS  972 (1591)
T ss_pred             HH--------------HHHHHHHhhc---chhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhchHHHHhhHHHHHHHHHH
Confidence            00              0111111111   122346677888888988754 55568888889999999999999999999


Q ss_pred             CCCChhhhHHHHHHHHhcCCChhhHHHHHHHHHHHhcCCchhhH---hhHHHHHHHHHHHHcCCCCh----hH----HHH
Q 000444          833 ELLNLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVTDESRVVI---SELHNLVDALAKLAAKPGSP----ES----LQQ  901 (1498)
Q Consensus       833 ~Li~~~elD~~Lak~i~~~~n~~av~Fa~~Ll~~~l~~~~~~~~---~df~~tleaL~~~~~~~~~~----~~----~~~  901 (1498)
                      +|++..++|.+|+++|++|.|..++.|+++|++....++.....   ..|..|.|.+.|+.+...+.    +.    ...
T Consensus       973 ~l~~~~~vd~~l~~amDs~~n~~vi~f~iell~~~~~~dnvi~~~~~~~~~~t~E~~~ri~q~v~s~~~~~g~~~~~~~~ 1052 (1591)
T KOG1831|consen  973 LLLDSGHVDKHLAKAMDSGGNQEVIAFLIELLRIAYGGDNVIADEWKNLFKETKEELFRILQSVESSEDKSGECASLCDY 1052 (1591)
T ss_pred             hccChhhHHHHHHHHhccCCChHHHHHHHHHHHHhccCcchhhhhhhhhhhhHHHHHHHHHHHHhcccccchhhhhHHHH
Confidence            99999999999999999999999999999999999888885542   45788999988864321110    00    011


Q ss_pred             HHHHHhCcccccCCCCCCccccchhhhhhcccccccccccCcCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhcCCCCCc
Q 000444          902 LIEIVRNPAANANASSGATTAKDDKARQSKDKKAYSHTTANREDYNIPESVDPDPVGFPEQVSMLFAEWYQICELPGSND  981 (1498)
Q Consensus       902 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~l~eq~~~lF~EWV~l~~~~~~~d  981 (1498)
                      .++.+-                         +   ++.     +........+|+.++.||++.+|.|||.+|+.+..++
T Consensus      1053 ~v~~~~-------------------------k---~~s-----~~~~m~~~~~~~~~lt~K~~~v~~~Wv~L~~~~~~~~ 1099 (1591)
T KOG1831|consen 1053 IVEHAI-------------------------K---SGS-----SADFMFRRMDDKQKLTEKTEIVFLEWVILLNDSRKND 1099 (1591)
T ss_pred             HHHhcc-------------------------C---CCC-----chhHHHHhcCcchhhhhHHHHHHHHHHHHHhccccch
Confidence            111110                         0   000     0001123346778999999999999999999999999


Q ss_pred             hhHHHHHHHHHHcCcccCCchhHHHHHHHHHHHHHHhhhccccCCCCCCCCCccccccc-hhHHHHHHHHHHHHhcCCCC
Q 000444          982 AACTRYVLQLHQNGLLKGDDMTDRFFRRLTEVSVAHCLSSEVINPGTLQSPQQSQSLSF-LAIDIYAKLMLSILKCCPVE 1060 (1498)
Q Consensus       982 ~~~~~Fi~qL~~~giL~~de~~~~FfR~~~E~sV~~~~~~~~~~~g~~~~~s~~~~~~f-~~iDA~akLIv~lik~~~~~ 1060 (1498)
                      ...++||+||+++|||++||..++|||.|+|+||+.++....           .....+ ..++|+.+....+..|.+  
T Consensus      1100 ~s~~~fi~ql~~~GVls~dd~ltqFfr~~~el~~~i~~~a~~-----------~~a~~~i~tv~~~~~~l~~l~~f~d-- 1166 (1591)
T KOG1831|consen 1100 ESLAAFIQQLNEIGVLSTDDLLTQFFRADLELCVVIFLEASL-----------ITALVQICTVYAFICTLEMLDGFVD-- 1166 (1591)
T ss_pred             HHHHHHHHHHHHcCcccchHHHHHHHHhhhhhhHHHHHHhcc-----------cccchhhhhHHHHHHHHHHHHHHhc--
Confidence            999999999999999999999999999999999999985431           012222 578888888888888763  


Q ss_pred             CCCcHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCchHHHHHHHHHhhcCCCCCCCcchHHHHHHHHHHhhhcCCCCCCch
Q 000444         1061 QGSSKIFLLSKILTVTVKFILKDAEEKKASFNPRPYFRLFINWLLDMSSLDPVADGSNFQILSAFANAFHVLQPLKVPAF 1140 (1498)
Q Consensus      1061 ~~~~k~~~L~kiL~ii~~vl~~dhe~~~~~FnqrpyfRlfs~LL~el~~~~~~~~~~~~~~l~~fa~~l~~lqP~~~PgF 1140 (1498)
                       +++|.+|++||+++|++|+++||+++|+.|||+||||+|+++|.||...+..++...++++++|+++||.|||.++|||
T Consensus      1167 -~~tk~dl~~KI~~livgv~akdHs~~~e~f~~~~y~Rlf~~ll~E~~~~~~~le~~~~~i~SaF~~tfhalqp~~~Pgf 1245 (1591)
T KOG1831|consen 1167 -LPTKIDLFNKILNLIVGVFAKDHSERGEYFNQCPYFRLFSMLLPELMTADSVLEPISLDILSAFKNTFHALQPRRFPGF 1245 (1591)
T ss_pred             -CchHHHHHHHHHHHHHHHHhcchHHhhhhHhhCcHhHHHHHHHHHhccccchhhhHHHHHHHHHHHHHHHhCcccCccc
Confidence             3789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHhHhHhhhcccchHHhhcCCCCCChHHHHHHHHHHHHhhhhhhcCCCCCchHHHHHHhHHHHHHHHHhccchHHHHHhh
Q 000444         1141 SFAWLELVSHRSFMPKLLIGNGQKGWPYIQRLLVNLLQFLEPFLRNAELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHF 1220 (1498)
Q Consensus      1141 aFaWl~LISHR~F~p~lL~~~~~~gW~~~~~LL~~llkFl~~~l~~~~l~~~~~~lYkgtLRilLvLlHDfPeFL~~~h~ 1220 (1498)
                      +|||++|||||+|+|++|..+++|||+.|++|+++|||||+||+||.++.++++++|||||||+||++||||||||+|||
T Consensus      1246 ~fawL~lishr~li~~~L~~~~~k~~~~~~~llislfkfL~~ylrn~~~~k~~~~lykgTLrVilvllhDfp~fl~~~hy 1325 (1591)
T KOG1831|consen 1246 AFAWLELISHRGLIPRMLAETNQKGWPLYAQLLISLFKFLAPYLRNYELFKPVQLLYKGTLRVILVLLHDFPEFLCEYHY 1325 (1591)
T ss_pred             ceeeeecccchhHHHHHHHhccccccHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHcchHHhhcccccchHHHHHhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccCCCcccccccceecccCCCCCCCCCCCCCCCCCCCcCcCCCCccccchHHHHHHhhhhHHHHHHhccCCCCcchH
Q 000444         1221 TFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLPEIRDPPRIFSEVDAALRAKQMRADVDDYLKTGQPGSSFL 1300 (1498)
Q Consensus      1221 ~lc~~iP~~ciQLRNiILSA~P~~~~LPDPf~p~lkvd~lpei~~~P~i~~d~~~~L~~~~lk~~vD~yl~~r~~~~~~l 1300 (1498)
                      .+||.||++|+||||+||||||++|++||||++|+|||.|||+..+|+|+++++. +.+...|+++|.|+++|.+. +|+
T Consensus      1326 ~~~~~iPp~cvqlrniilsafp~~m~lpdpf~~~lkve~lpe~~~ap~i~~~~~~-i~~~~~~~dl~a~l~s~~~~-t~l 1403 (1591)
T KOG1831|consen 1326 GLCDTIPPNCVQLRNIILSAFPSNMRLPDPFAVNLKVEMLPEGFYAPRILYSITQ-IMPSNFRKDLDARLKSSSPV-TFL 1403 (1591)
T ss_pred             hccCCCCcHHHHHHHHHHHhccccCcCCCccccccchhhhhhhhcCchhcCCHHH-hcccccCCCHHHHhhccccH-hHH
Confidence            9999999999999999999999999999999999999999999999999999999 88899999999999998885 889


Q ss_pred             HHHHHHcCCCccccccCCccccHhHHHHHHHHHHHHHHHhhhccCCcccccCCCCchhhhhhhhHHHHHHHHHhccChhh
Q 000444         1301 SELKQKLLLPPSEAASAGTRYNVPLINSLVLYVGMQAIHQLQTRTSHAQSTGNNSSLTAFLVSAALDIFQTLIQDLDTEG 1380 (1498)
Q Consensus      1301 ~~i~~~L~~~~~~~~~~g~~yn~~linalVLyvg~~ai~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~~L~~~ld~E~ 1380 (1498)
                      ..++..++...    ..|++||..+|||+|+|||++|+.+++++....+++       +++|+++|+|+++|+.+||+||
T Consensus      1404 ~~~~~~~~~~~----~~~~~~~~~~~naiVlyvG~~ai~~~~~~~~~~~~~-------~it~s~~~~i~~nL~~nld~e~ 1472 (1591)
T KOG1831|consen 1404 SCLPQLLQVIK----EPGTRYNNQLINAIVLYVGIQAIAHLRRKSQNPSTS-------TITHSAYMDIFQNLIVNLDTEG 1472 (1591)
T ss_pred             HHhhHHHHHhc----CccccccHHHHHHHHHHHHHHHHHHHHhccCCCccc-------ccccCchhhHHHHHHHhcchhh
Confidence            98888776532    479999999999999999999999998766555443       4678999999999999999999


Q ss_pred             HHHHHHHHHhhhcCCChhHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhccCCCCchHHHHHHHHHhhCCCCccccCCc
Q 000444         1381 RYLFLNAAANQLRYPNNHTHYFSFVLLYLYAEANQEIIQEQITRVLFERLIVNRPHPWGLLITFIELIKNPRYNFWNQSF 1460 (1498)
Q Consensus      1381 RY~ll~aianqLRYPN~HT~~Fs~~lL~LF~~~~~~~IqEqItRVLLERliv~rPHPWGLlitfiELikNp~Y~Fw~~~F 1460 (1498)
                      ||++++||||||||||+|||||||++||||.+++...|||||||+++||+||||||||||+|||+||||||.||||+|||
T Consensus      1473 ry~~l~aianqlryp~~ht~~~s~~~l~lfk~~~~~pike~i~~~~lerii~nrPHpWGllitF~eLikN~~YNfw~~~f 1552 (1591)
T KOG1831|consen 1473 RYLLLNAIANQLRYPNSHTYYFSCVFLYLFKRAGNNPIKEQITRVLLERIIVNRPHPWGLLITFTELIKNPDYNFWDHPF 1552 (1591)
T ss_pred             hHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhcCCCCCchhHHHHHHHHcCCCcccccCcc
Confidence            99999999999999999999999999999999988889999999999999999999999999999999999999999999


Q ss_pred             CcchHHHHHHHHHHHHhcCCCCCCCc
Q 000444         1461 IRCAPEIEKLFESVARSCGGLKPVDD 1486 (1498)
Q Consensus      1461 vk~aPEIe~lF~sva~sc~~~~~~~~ 1486 (1498)
                      |+|+|||.+||++|+++|+....++.
T Consensus      1553 v~~~pEI~rlfqsl~~~~~~~s~s~~ 1578 (1591)
T KOG1831|consen 1553 VQCAPEIKRLFQSLAKYCKAYSTSEQ 1578 (1591)
T ss_pred             cccCHHHHHHHHHHHHHhhCcccccc
Confidence            99999999999999999997765544

>COG5103 CDC39 Cell division control protein, negative regulator of transcription [Cell division and chromosome partitioning / Transcription] Back     alignment and domain information
>PF04054 Not1: CCR4-Not complex component, Not1; InterPro: IPR007196 The Ccr4-Not complex is a global regulator of gene expression that is conserved from yeast to human Back     alignment and domain information
>PF12842 DUF3819: Domain of unknown function (DUF3819); InterPro: IPR024557 The Ccr4-Not complex is a global regulator of gene expression that is conserved from yeast to human Back     alignment and domain information
>KOG1831 consensus Negative regulator of transcription [Transcription] Back     alignment and domain information
>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G) Back     alignment and domain information
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain Back     alignment and domain information
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1498
4gmj_A229 Structure Of Human Not1 Mif4g Domain Co-Crystallize 4e-58
4gml_A235 Crystal Structure Of Human Not1 Mif4g Domain Length 4e-58
4b89_A249 Mif4g Domain Of The Yeast Not1 Length = 249 5e-37
>pdb|4GMJ|A Chain A, Structure Of Human Not1 Mif4g Domain Co-Crystallized With Caf1 Length = 229 Back     alignment and structure 
Iteration: 1

 Score =  224 bits (570), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 104/214 (48%), Positives = 154/214 (71%), Gaps = 2/214 (0%)
Query: 47  VQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLD 106
           +Q+KI+FI NN+S  N+  K +E  E +KE++ PW +QY+VMKR SIEPNFH LY  FLD
Sbjct: 7   IQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVSIEPNFHSLYSNFLD 66
Query: 107 KVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRARE 166
            + +   N+ ++  TY N KVLL S+   ++  +RSLLKNLG WLG +T+ +N+ +   +
Sbjct: 67  TLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLGMITLAKNKPILHTD 126
Query: 167 IDPKSLIIEAYEKGL--MIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPN 224
           +D KSL++EAY KG   ++ V+PF +K+LE    S+ ++PPNPWTMAI+ +LAE++   +
Sbjct: 127 LDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSVVFRPPNPWTMAIMNVLAELHQEHD 186
Query: 225 LKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKR 258
           LK+NLKF+IEVL KNL +D+ ++ P +LLKD+ R
Sbjct: 187 LKLNLKFEIEVLCKNLALDINELKPGNLLKDKDR 220
>pdb|4GML|A Chain A, Crystal Structure Of Human Not1 Mif4g Domain Length = 235 Back     alignment and structure
>pdb|4B89|A Chain A, Mif4g Domain Of The Yeast Not1 Length = 249 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1498
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-10
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 70.3 bits (171), Expect = 4e-12
 Identities = 96/662 (14%), Positives = 192/662 (29%), Gaps = 224/662 (33%)

Query: 868  VTDESRVVIS--ELHNLVDALAKLAAKPGSPESLQQLIEIVRNPAANANASSGATTAKDD 925
            V D  + ++S  E+ +++ +         +     +L   + +              + +
Sbjct: 38   VQDMPKSILSKEEIDHIIMS-------KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN 90

Query: 926  ----------KARQ-SKDKKAYSHTTANREDYNIPESVDPDPVGFPEQVSMLFAEWYQIC 974
                      + RQ S   + Y     +R  YN  +      V   +    L  +   + 
Sbjct: 91   YKFLMSPIKTEQRQPSMMTRMYI-EQRDRL-YNDNQVFAKYNVSRLQPYLKL-RQA--LL 145

Query: 975  EL-PGSN-----DAACTRYVLQLHQNGLLKGDDMTDRFFRRLTEVSVAHCLSSE------ 1022
            EL P  N          +  + L    +     +  +   ++  +++ +C S E      
Sbjct: 146  ELRPAKNVLIDGVLGSGKTWVALD---VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML 202

Query: 1023 -----VINPGTLQSPQQSQSLSFLAIDIYAKL-----------MLSILKCCPVEQGSSKI 1066
                  I+P        S ++      I A+L            L +L    V+  ++K 
Sbjct: 203  QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL--NVQ--NAKA 258

Query: 1067 ---FLLS-KILTVT----VKFILKDA-------EEKKASFNPRPYFRLFINWL-LDMSSL 1110
               F LS KIL  T    V   L  A       +    +  P     L + +L      L
Sbjct: 259  WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318

Query: 1111 DPVADGSNFQILSAFANAFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIGNGQKGWPYIQ 1170
                  +N + LS  A                   E +                 W ++ 
Sbjct: 319  PREVLTTNPRRLSIIA-------------------ESIRD---GLATW-----DNWKHVN 351

Query: 1171 -----RLLVNLLQFLEPFLRNAELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDV 1225
                  ++ + L  LEP    AE     R ++                            
Sbjct: 352  CDKLTTIIESSLNVLEP----AEY----RKMFDR-------------------------- 377

Query: 1226 IPPSCIQMRNIILSAFPRNMRLPDPSTPNLKI---DLLPEIRDPPRIFSE-VDAAL---R 1278
                        LS FP +  +P   T  L +   D++    D   + ++    +L   +
Sbjct: 378  ------------LSVFPPSAHIP---TILLSLIWFDVIKS--DVMVVVNKLHKYSLVEKQ 420

Query: 1279 AKQMRADVDD-YLKTGQPGSSFLSELKQKLLLPPSEAASAGTRYNVPL---INSLVL--- 1331
             K+    +   YL+      +    L + ++            YN+P     + L+    
Sbjct: 421  PKESTISIPSIYLELKVKLEN-EYALHRSIV----------DHYNIPKTFDSDDLIPPYL 469

Query: 1332 ------YVG--MQAIHQ----------------LQTRTSHAQSTGN-NSSLTAFLVSAAL 1366
                  ++G  ++ I                  L+ +  H  +  N + S+   L    L
Sbjct: 470  DQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQ--L 527

Query: 1367 DIFQTLIQDLDTE-GRYL-----FL-NAAANQLRYPNNHTHYFSFVLL----YLYAEANQ 1415
              ++  I D D +  R +     FL     N +     +T      L+     ++ EA++
Sbjct: 528  KFYKPYICDNDPKYERLVNAILDFLPKIEENLICSK--YTDLLRIALMAEDEAIFEEAHK 585

Query: 1416 EI 1417
            ++
Sbjct: 586  QV 587
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1498
d1hu3a_243 Eukaryotic initiation factor eIF4G {Human (Homo sa 95.74
d1uw4b_248 Regulator of nonsense transcripts 2, UPF2 {Human ( 94.8
>d1hu3a_ a.118.1.14 (A:) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: Eukaryotic initiation factor eIF4G
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.74  E-value=0.024  Score=30.66  Aligned_cols=14  Identities=14%  Similarity=0.377  Sum_probs=7.0

Q ss_pred             HHHHHHHHHCCCCC
Q ss_conf             99999998869656
Q 000444          985 TRYVLQLHQNGLLK  998 (1498)
Q Consensus       985 ~~Fi~qL~~~giL~  998 (1498)
                      ..|+..|...|++.
T Consensus       150 i~figeLy~~~~v~  163 (243)
T d1hu3a_         150 IKFIGELFKLKMLT  163 (243)
T ss_dssp             HHHHHHHHTTTCSC
T ss_pred             HHHHHHHHCCCCCH
T ss_conf             99999997136430
>d1uw4b_ a.118.1.14 (B:) Regulator of nonsense transcripts 2, UPF2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure