Citrus Sinensis ID: 000452
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1495 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LK64 | 1514 | ABC transporter C family | yes | no | 0.987 | 0.975 | 0.663 | 0.0 | |
| Q9LK62 | 1493 | ABC transporter C family | no | no | 0.982 | 0.983 | 0.616 | 0.0 | |
| Q8VZZ4 | 1466 | ABC transporter C family | no | no | 0.956 | 0.975 | 0.614 | 0.0 | |
| Q7GB25 | 1514 | ABC transporter C family | no | no | 0.892 | 0.881 | 0.521 | 0.0 | |
| Q9M1C7 | 1506 | ABC transporter C family | no | no | 0.948 | 0.941 | 0.5 | 0.0 | |
| Q7FB56 | 1053 | Putative ABC transporter | no | no | 0.701 | 0.996 | 0.546 | 0.0 | |
| Q7DM58 | 1516 | ABC transporter C family | no | no | 0.945 | 0.932 | 0.412 | 0.0 | |
| Q9LZJ5 | 1539 | ABC transporter C family | no | no | 0.939 | 0.912 | 0.409 | 0.0 | |
| Q9LYS2 | 1453 | ABC transporter C family | no | no | 0.887 | 0.913 | 0.423 | 0.0 | |
| Q8LGU1 | 1464 | ABC transporter C family | no | no | 0.830 | 0.847 | 0.441 | 0.0 |
| >sp|Q9LK64|AB3C_ARATH ABC transporter C family member 3 OS=Arabidopsis thaliana GN=ABCC3 PE=1 SV=1 | Back alignment and function desciption |
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Score = 2006 bits (5197), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 990/1492 (66%), Positives = 1206/1492 (80%), Gaps = 15/1492 (1%)
Query: 7 FLLKQAFLRGASGSLHLFLLLGLFGLWVWKKLKVGEGDHSGGSKERFKNKKALWYKLTLV 66
FLLK FLR SG LH LLL LF WV KK++ GD G E K+++ +K L
Sbjct: 31 FLLKPLFLRWLSGFLHSVLLLVLFFSWVRKKIR---GD--SGVTESLKDRRDFGFKSALF 85
Query: 67 CCFVVSLSSLVLCLLSYFYWYGNG-RSYDQLVILFDFGVRTLGWGAICVYLRTVFLNLRQ 125
C +SL +LVL LS FYWY +G +QLV F + + WG + + L +
Sbjct: 86 CSLALSLLNLVLMSLSGFYWYESGWLDNEQLVSSLGFLLGMVSWGVLSICLHRC-RDCEH 144
Query: 126 PKLPMLLKIWWGFYVFISCYCLIVDIVLYQKQVNLPIQYLVSDVVSVITGLFPCFVGFMS 185
K P LL++W FY+ +SCY L+VD V+Y+++ +P+ LV D+V+ I +F +V +
Sbjct: 145 KKAPFLLRLWLVFYLVVSCYSLVVDFVMYERRETVPVHLLVFDIVAFIAAVFLGYVAVLK 204
Query: 186 KIEGEDTLILQEPLLKVDSGES----EGTVASIKSRGADTVTPYSNAGLFSVLTYTWINS 241
K +L+EPLL + G+S + +V K+ G+ TPYS AG+ S+LT++W++
Sbjct: 205 KDRSNSNGVLEEPLL--NGGDSRVGGDDSVELNKTNGSGEATPYSRAGILSLLTFSWMSP 262
Query: 242 LIALGNKKTLDLEDVPQLDSGNSVVGVFATFKNKLET-EAGLGSGLTTLKLIKAMFRSVW 300
LI +GNKKTLDLEDVPQL +SVVG+ F++ LE+ + G SG+TT KLIKA++ +
Sbjct: 263 LIDIGNKKTLDLEDVPQLHDTDSVVGLAPKFRSMLESPDGGERSGVTTFKLIKALYFTAQ 322
Query: 301 KDVLLTALVAIVCTLATYVGPYLIDTLVQYLSGKRDFENEGYALVSAFCVAKLVECLCQR 360
++L+TA A + T+A+YVGP LIDT VQYL+G+R + +EGY LV F AK+VECL QR
Sbjct: 323 WEILVTAFFAFIYTVASYVGPALIDTFVQYLNGRRQYNHEGYVLVITFFAAKIVECLSQR 382
Query: 361 FFVFRLEQLGIRLRAALIAMIYNKGLKLSSQAKQGNTSGEIINFMTVDAERVAELSWYIH 420
+ FRL+++GIR+R+AL+AMIY KGL LS Q+KQG TSGEIINFMTVDAER+ SWY+H
Sbjct: 383 HWFFRLQKVGIRMRSALVAMIYEKGLTLSCQSKQGRTSGEIINFMTVDAERIGNFSWYMH 442
Query: 421 DPWLFLFEVALSFLILYKSLGIASVAAFFGTVIFMLVNVPLSTVQEKFQNELMKSKDERM 480
DPW+ L +V L+ ILY++LG+AS+AA T+I ML+N P +QE+FQ +LM++KD RM
Sbjct: 443 DPWMVLLQVGLALWILYRNLGLASIAALVATIIVMLINFPFGRMQERFQEKLMEAKDSRM 502
Query: 481 KATSEILRNMRILKLQGWELKFLSKTIDLRKSESGWLKRCLYTSSITSFVFWCAPTFVSV 540
K+TSEILRNMRILKLQGWE+KFLSK DLRKSE GWLK+ +Y S++ SFVFW APT VSV
Sbjct: 503 KSTSEILRNMRILKLQGWEMKFLSKIFDLRKSEEGWLKKYVYNSAVISFVFWGAPTLVSV 562
Query: 541 ITFGTCILLKVPLESGKVLSAIATFRLLQILIYKLPAIISMTIQTKVSLQRIASFFCLDE 600
TFG CILL +PLESGK+LSA+ATFR+LQ IY LP ISM +QTKVSL R+AS+ CLD
Sbjct: 563 STFGACILLGIPLESGKILSALATFRILQEPIYNLPDTISMIVQTKVSLDRLASYLCLDN 622
Query: 601 LQPDLVEKQPRGSSETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKS 660
LQPD+VE+ P+GSS+ A+E+ + SWD+SS NPTLKDIN KVF GM+VAVCGTVGSGKS
Sbjct: 623 LQPDIVERLPKGSSDVAVEVINSTLSWDVSSSNPTLKDINFKVFPGMKVAVCGTVGSGKS 682
Query: 661 SLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMDRERYNAVLDACS 720
SLLS +LGEVPK+SG+LK+CGTKAYVAQSPWIQSGKIEDNILFGK M+RERY+ VL+ACS
Sbjct: 683 SLLSSLLGEVPKVSGSLKVCGTKAYVAQSPWIQSGKIEDNILFGKPMERERYDKVLEACS 742
Query: 721 LEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSH 780
L KDLEILSFGDQTV+GERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSH
Sbjct: 743 LSKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSH 802
Query: 781 LFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVINSGTDFMELVD 840
LFKEVLLGLL SK+V+YVTHQVEFLPAADL+LV+KDG+I+QAGKY D++NSGTDFMEL+
Sbjct: 803 LFKEVLLGLLCSKSVIYVTHQVEFLPAADLILVMKDGRISQAGKYNDILNSGTDFMELIG 862
Query: 841 AHKQALSTLDSIEGRPLSEKGSANGENDGTSATDGVVKEVENKEVQNDREDKVAEPQRQL 900
AH++AL+ +DS++ +SEK + EN V +++E+++++ND+ + V EPQRQ+
Sbjct: 863 AHQEALAVVDSVDANSVSEKSALGQENVIVKDAIAVDEKLESQDLKNDKLESV-EPQRQI 921
Query: 901 VQEEEREKGKVEFSVYWKYITAAYGGVLVPFILLAQTLFQILQIASNYWIAWATPASKDI 960
+QEEEREKG V VYWKYIT AYGG LVPFILL Q LFQ+LQI SNYW+AWATP S+D+
Sbjct: 922 IQEEEREKGSVALDVYWKYITLAYGGALVPFILLGQVLFQLLQIGSNYWMAWATPVSEDV 981
Query: 961 KPRVTGSMLLIVFVALAFGSSFCILARSTLLATAGYKTATLLFNKMHYCIFRAPMSFFDA 1020
+ V S L+IV+VALAFGSS CIL R+TLL TAGYKTAT LF+KMH+CIFR+PMSFFD+
Sbjct: 982 QAPVKLSTLMIVYVALAFGSSLCILLRATLLVTAGYKTATELFHKMHHCIFRSPMSFFDS 1041
Query: 1021 TPSGRIINRASTDQSAVDLSIPALIGSFAFSIIRVLGVIGVMSLVAWQVFIVFIPVIATC 1080
TPSGRI++RASTDQSAVDL +P GS A ++I+++G+IGVMS V+W VF+VFIPV+A
Sbjct: 1042 TPSGRIMSRASTDQSAVDLELPYQFGSVAITVIQLIGIIGVMSQVSWLVFLVFIPVVAAS 1101
Query: 1081 IWYQQYYISSARELSRLVGVCKAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGYS 1140
IWYQ+YYI++ARELSRLVGVCKAPLIQHF+ET+SG+TTIRSF QE RF NM L DGYS
Sbjct: 1102 IWYQRYYIAAARELSRLVGVCKAPLIQHFSETISGATTIRSFSQEFRFRSDNMRLSDGYS 1161
Query: 1141 RPTFHVAAAMEWLGFRLDMLSNITFAFSLVFLISIPKGFIDPAIAGLAVTYGLTLNNLQA 1200
RP F+ A AMEWL FRLDMLS++TF FSLVFL+SIP G IDP++AGLAVTYGL+LN LQA
Sbjct: 1162 RPKFYTAGAMEWLCFRLDMLSSLTFVFSLVFLVSIPTGVIDPSLAGLAVTYGLSLNTLQA 1221
Query: 1201 MLIWLACQMENKIISVERIFQYTCIPSEPPLEIEESRPNHSWPSHGKIDLRDLQVRYAPH 1260
LIW C +ENKIISVERI QY +PSEPPL IE +RP SWPS G++++RDLQVRYAPH
Sbjct: 1222 WLIWTLCNLENKIISVERILQYASVPSEPPLVIESNRPEQSWPSRGEVEIRDLQVRYAPH 1281
Query: 1261 MPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHD 1320
MP VLRGI+CTF G +TGIVGRTGSGKSTLIQTLFRIVEP+AG+I IDG++I IGLHD
Sbjct: 1282 MPLVLRGITCTFKGGLRTGIVGRTGSGKSTLIQTLFRIVEPSAGEIRIDGVNILTIGLHD 1341
Query: 1321 LRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTE 1380
LR RLSIIPQDP MFEGT+RSN+DPLEEYTD+QIWEALDKCQLGDEVRKKE KLDS V+E
Sbjct: 1342 LRLRLSIIPQDPTMFEGTMRSNLDPLEEYTDDQIWEALDKCQLGDEVRKKEQKLDSSVSE 1401
Query: 1381 NGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIA 1440
NG+NWSMGQRQLVCLGRVLLKR KIL+LDEATASVDTATDNLIQ++LR+HFSDCTVITIA
Sbjct: 1402 NGDNWSMGQRQLVCLGRVLLKRSKILVLDEATASVDTATDNLIQKTLREHFSDCTVITIA 1461
Query: 1441 HRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSFSQLVAEYTQRSSSSL 1492
HRI+SVIDSDMVLLLS+G+IEEYD+P +LLE+KSSSFS+LVAEYT RSSSS
Sbjct: 1462 HRISSVIDSDMVLLLSNGIIEEYDTPVRLLEDKSSSFSKLVAEYTSRSSSSF 1513
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Pump for glutathione S-conjugates. Mediates the transport of glutathione conjugates such as chlorodinitrobenzene-GS (DNB-GS), and of chlorophyll catabolites such as Bn-NCC-1. Transports also heavy metals such as cadmium (Cd). Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 6EC: .EC: 3EC: .EC: 4EC: 4 |
| >sp|Q9LK62|AB7C_ARATH ABC transporter C family member 7 OS=Arabidopsis thaliana GN=ABCC7 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1836 bits (4755), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 916/1485 (61%), Positives = 1135/1485 (76%), Gaps = 16/1485 (1%)
Query: 7 FLLKQAFLRGASGSLHLFLLLGLFGLWVWKKLKVGEGDHSGGSKERFKNKKALWYKLTLV 66
FLL+ + S +L LLL +FG V+KK ++G + + ERFK+ + KL ++
Sbjct: 14 FLLESNYFPMFSIFFNLLLLLVMFGSCVYKK-RLGWENSDAFTNERFKDMSLTYNKLVVI 72
Query: 67 CCFVVSLSSLVLCLLSYFYWYGNGRSYDQLVILFDFGVRTLGWGAICVYLRTVFLNLRQP 126
CC +S + VL LLS F + NG +L+IL D L WGAI Y+R+ F
Sbjct: 73 CCETLSALNSVLLLLSCFNLHKNGWDRSELMILLDLLFTALSWGAISFYIRSQFTYSHDQ 132
Query: 127 KLPMLLKIWWGFYVFISCYCLIVDIVLYQKQVNLPIQYLVSDVVSVITGLFPCFVGFMSK 186
K P+LL++WW Y SCY L+VDI LY+KQ + + L+SDV++V GLF C+ +
Sbjct: 133 KFPILLRVWWVLYFMFSCYRLLVDIALYKKQELVSVHLLLSDVLAVSVGLFLCYSCLQKQ 192
Query: 187 IEGEDTLILQEPLLKVDSGESEGTVASI-KSRGADTVTPYSNAGLFSVLTYTWINSLIAL 245
+GE +L E L + S T + K+ + VTP+SNAG S ++++W++ LI L
Sbjct: 193 GQGERINLLLEEPLLNGAESSAATSVQLDKAEDDEVVTPFSNAGFLSHVSFSWMSPLIVL 252
Query: 246 GNKKTLDLEDVPQLDSGNSVVGVFATFKNKLETEAGLGSGLTTLKLIKAMFRSVWKDVLL 305
GN+K +D EDVPQ+D+ + +F F++KLE + G +TT KLIKA+F SVW+D+LL
Sbjct: 253 GNEKIIDSEDVPQVDNSDRAEKLFWIFRSKLEWDDG-ERRITTYKLIKALFFSVWRDILL 311
Query: 306 TALVAIVCTLATYVGPYLIDTLVQYLSGKRDFENEGYALVSAFCVAKLVECLCQRFFVFR 365
+ L A V T++ YV PYL+DT VQYL+G+R + N+G LV+ F VAKLVEC +R + FR
Sbjct: 312 STLFAFVYTVSCYVAPYLMDTFVQYLNGQRQYSNQGVVLVTTFFVAKLVECQARRNWYFR 371
Query: 366 LEQLGIRLRAALIAMIYNKGLKLSSQAKQGNTSGEIINFMTVDAERVAELSWYIHDPWLF 425
L++ GI +R+ L++MIY KGL L +KQG+TSGEIIN MTVDAER++ SWY+HDPW+
Sbjct: 372 LQKAGIGMRSVLVSMIYEKGLTLPCYSKQGHTSGEIINLMTVDAERISAFSWYMHDPWIL 431
Query: 426 LFEVALSFLILYKSLGIASVAAFFGTVIFMLVNVPLSTVQEKFQNELMKSKDERMKATSE 485
+ +++L+ LILY+SLG+ S+AAF T + ML N+PL+ ++EKFQ LM+SKD RMK TSE
Sbjct: 432 VLQISLALLILYRSLGLGSIAAFAATFLVMLGNIPLAKLEEKFQGNLMESKDNRMKKTSE 491
Query: 486 ILRNMRILKLQGWELKFLSKTIDLRKSESGWLKRCLYTSSITSFVFWCAPTFVSVITFGT 545
L NMRILKLQGWE+KFL K +DLR E+GWLK+ +Y S+ S V W AP+FVS FG
Sbjct: 492 ALLNMRILKLQGWEMKFLHKILDLRGIEAGWLKKFVYNSAAISSVLWAAPSFVSATAFGA 551
Query: 546 CILLKVPLESGKVLSAIATFRLLQILIYKLPAIISMTIQTKVSLQRIASFFCLDELQPDL 605
C+LLK+PLESGK+++A+ATFR+LQ IYKLP ISM +QTKVSL RIA+F CLD+LQ D
Sbjct: 552 CMLLKIPLESGKIIAALATFRILQTPIYKLPDTISMIVQTKVSLDRIATFLCLDDLQQDG 611
Query: 606 VEKQPRGSSETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSC 665
+E+ P GSS+ +E+++G FSWD SS PTLKDI K+ HGM +A+CGTVGSGKSSLLS
Sbjct: 612 MERLPSGSSKMDVEVSNGAFSWDDSSPIPTLKDIRFKIPHGMNIAICGTVGSGKSSLLSS 671
Query: 666 ILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMDRERYNAVLDACSLEKDL 725
ILGEVPKISG LK+CG KAY+AQSPWIQSGK+E+NILFGK M RE Y VL+ACSL KDL
Sbjct: 672 ILGEVPKISGNLKVCGRKAYIAQSPWIQSGKVEENILFGKPMQREWYQRVLEACSLNKDL 731
Query: 726 EILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEV 785
E+ F DQTV+GERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEV
Sbjct: 732 EVFPFRDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEV 791
Query: 786 LLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVINSGTDFMELVDAHKQA 845
LLGLL +KTV+YVTHQ+EFLP ADL+LV+KDG+ITQAGKY +++ SGTDFMELV AH A
Sbjct: 792 LLGLLRNKTVIYVTHQLEFLPEADLILVMKDGRITQAGKYNEILESGTDFMELVGAHTDA 851
Query: 846 LSTLDSIEGRPLSEKGSANGENDGTSATDGVVKEVENKEVQNDREDKVAEPQRQLVQEEE 905
L+ +DS E KGSA+ ++ T++ + V E K+ E+ + P+ QLVQEEE
Sbjct: 852 LAAVDSYE------KGSASAQS--TTSKESKVSNDEEKQ-----EEDLPSPKGQLVQEEE 898
Query: 906 REKGKVEFSVYWKYITAAYGGVLVPFILLAQTLFQILQIASNYWIAWATPASKDIKPRVT 965
REKGKV F+VY KY+ AYGG LVP IL+ Q LFQ+L I SNYW+AW TP SKD+KP V+
Sbjct: 899 REKGKVGFTVYQKYMKLAYGGALVPIILVVQILFQVLNIGSNYWMAWVTPVSKDVKPLVS 958
Query: 966 GSMLLIVFVALAFGSSFCILARSTLLATAGYKTATLLFNKMHYCIFRAPMSFFDATPSGR 1025
GS L++V+V LA SSFCIL R+ L A G+K AT LFN+MH+ IFRA MSFFDATP GR
Sbjct: 959 GSTLILVYVFLATASSFCILVRAMLSAMTGFKIATELFNQMHFRIFRASMSFFDATPIGR 1018
Query: 1026 IINRASTDQSAVDLSIPALIGSFAFSIIRVLGVIGVMSLVAWQVFIVFIPVIATCIWYQQ 1085
I+NRASTDQSAVDL +P+ + A + + +LG+IGVM VAWQV IVFIPVIA C WY+Q
Sbjct: 1019 ILNRASTDQSAVDLRLPSQFSNLAIAAVNILGIIGVMGQVAWQVLIVFIPVIAACTWYRQ 1078
Query: 1086 YYISSARELSRLVGVCKAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGYSRPTFH 1145
YYIS+AREL+RL G+ ++PL+QHF+ET+SG TTIRSFDQE RF M L D YSR FH
Sbjct: 1079 YYISAARELARLSGISRSPLVQHFSETLSGITTIRSFDQEPRFRTDIMRLNDCYSRLRFH 1138
Query: 1146 VAAAMEWLGFRLDMLSNITFAFSLVFLISIPKGFIDPAIAGLAVTYGLTLNNLQAMLIWL 1205
+AMEWL FRLD+LS + FA SLV L+S+P+G I+P+ AGLAVTY L LN+LQA LIW
Sbjct: 1139 AISAMEWLCFRLDLLSTVAFALSLVILVSVPEGVINPSFAGLAVTYALNLNSLQATLIWT 1198
Query: 1206 ACQMENKIISVERIFQYTCIPSEPPLEIEESRPNHSWPSHGKIDLRDLQVRYAPHMPFVL 1265
C +ENK+ISVER+ QY IPSEP L IE +RP SWP G+I + +LQVRY PH+P VL
Sbjct: 1199 LCDLENKMISVERMLQYIDIPSEPSLVIESTRPEKSWPCRGEITICNLQVRYGPHLPMVL 1258
Query: 1266 RGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRL 1325
RG++CTF G KTGIVGRTG GKSTLIQTLFRIVEPAAG+I IDGI+I IGLHDLR+RL
Sbjct: 1259 RGLTCTFRGGLKTGIVGRTGCGKSTLIQTLFRIVEPAAGEIRIDGINILTIGLHDLRSRL 1318
Query: 1326 SIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENW 1385
SIIPQ+P MFEGTVRSN+DPLEEY D+QIWEALDKCQLGDE+RKKE KLDS V+ENG+NW
Sbjct: 1319 SIIPQEPTMFEGTVRSNLDPLEEYADDQIWEALDKCQLGDEIRKKELKLDSPVSENGQNW 1378
Query: 1386 SMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITS 1445
S+GQRQLVCLGRVLLKR K+L+LDEATASVDTATD LIQ++LRQHFS CTVITIAHRI+S
Sbjct: 1379 SVGQRQLVCLGRVLLKRSKVLILDEATASVDTATDTLIQETLRQHFSGCTVITIAHRISS 1438
Query: 1446 VIDSDMVLLLSHGLIEEYDSPRKLLENKSSSFSQLVAEYTQRSSS 1490
VIDSDMVLLL GLIEE+DSP +LLE+KSSSFS+LVAEYT S S
Sbjct: 1439 VIDSDMVLLLDQGLIEEHDSPARLLEDKSSSFSKLVAEYTASSDS 1483
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Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q8VZZ4|AB6C_ARATH ABC transporter C family member 6 OS=Arabidopsis thaliana GN=ABCC6 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 1813 bits (4697), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 897/1460 (61%), Positives = 1115/1460 (76%), Gaps = 30/1460 (2%)
Query: 31 GLWVWKKLKVGEGDHSGGSKERFKNKKALWYKLTLVCCFVVSLSSLVLCLLSYFYWYGNG 90
G W++KK +V D E FK+ + KL L+CC +S+ VL LLS +W+ NG
Sbjct: 32 GSWLFKK-RVACEDTDAIMNEEFKHISFSYNKLVLICCVSLSVFYSVLSLLSCLHWHTNG 90
Query: 91 RSYDQLVILFDFGVRTLGWGAICVYLRTVFLNLRQPKLPMLLKIWWGFYVFISCYCLIVD 150
+ D + L WG+I VYL + N + K+ LL++WW F+ +SCY L+VD
Sbjct: 91 WPF------LDLLLAALTWGSISVYLFGRYTNSCEQKVLFLLRVWWVFFFVVSCYHLVVD 144
Query: 151 IVLYQKQVNLPIQYLVSDVVSVITGLFPCFVGFMSKIEGEDTLILQEPLLKVDSGESEGT 210
VLY+KQ + + +++SD+V V GLF C K EGE +L+EPLL S ES
Sbjct: 145 FVLYKKQEMVSVHFVISDLVGVCAGLFLCCSCLWKKGEGERIDLLKEPLLS--SAES--- 199
Query: 211 VASIKSRGADTVTPYSNAGLFSVLTYTWINSLIALGNKKTLDLEDVPQLDSGNSVVGVFA 270
S + P+S AG+ S ++++W++ LI LGN+K +D++DVPQLD ++ +F
Sbjct: 200 -----SDNEEVTAPFSKAGILSRMSFSWMSPLITLGNEKIIDIKDVPQLDRSDTTESLFW 254
Query: 271 TFKNKLETEAGLGSGLTTLKLIKAMFRSVWKDVLLTALVAIVCTLATYVGPYLIDTLVQY 330
F++KLE + G +TT KLIKA+F SVW+D++L+AL+A V T++ YV PYL+D VQY
Sbjct: 255 IFRSKLEWDDG-ERRITTFKLIKALFLSVWRDIVLSALLAFVYTVSCYVAPYLMDNFVQY 313
Query: 331 LSGKRDFENEGYALVSAFCVAKLVECLCQRFFVFRLEQLGIRLRAALIAMIYNKGLKLSS 390
L+G R ++N+GY LV+ F VAKLVEC QR + FR ++ G+ +R+ L++MIY KGL L
Sbjct: 314 LNGNRQYKNQGYVLVTTFFVAKLVECQTQRQWFFRGQKAGLGMRSVLVSMIYEKGLTLPC 373
Query: 391 QAKQGNTSGEIINFMTVDAERVAELSWYIHDPWLFLFEVALSFLILYKSLGIASVAAFFG 450
+KQG+TSGEIIN M VDA+R++ SW++HDPW+ + +V+L+ ILYKSLG+ S+AAF
Sbjct: 374 HSKQGHTSGEIINLMAVDADRISAFSWFMHDPWILVLQVSLALWILYKSLGLGSIAAFPA 433
Query: 451 TVIFMLVNVPLSTVQEKFQNELMKSKDERMKATSEILRNMRILKLQGWELKFLSKTIDLR 510
T++ ML N P + ++EKFQ+ LMKSKD RMK TSE+L NM+ILKLQGWE+KFLSK ++LR
Sbjct: 434 TILVMLANYPFAKLEEKFQSSLMKSKDNRMKKTSEVLLNMKILKLQGWEMKFLSKILELR 493
Query: 511 KSESGWLKRCLYTSSITSFVFWCAPTFVSVITFGTCILLKVPLESGKVLSAIATFRLLQI 570
E+GWLK+ +Y SS + V W AP+F+S FG C+LLK+PLESGK+L+A+ATFR+LQ
Sbjct: 494 HIEAGWLKKFVYNSSAINSVLWAAPSFISATAFGACLLLKIPLESGKILAALATFRILQG 553
Query: 571 LIYKLPAIISMTIQTKVSLQRIASFFCLDELQPDLVEKQPRGSSETAIEIADGNFSWDIS 630
IYKLP ISM +QTKVSL RIASF CLD+LQ D+V + P GSSE A+EI++G FSWD S
Sbjct: 554 PIYKLPETISMIVQTKVSLNRIASFLCLDDLQQDVVGRLPSGSSEMAVEISNGTFSWDDS 613
Query: 631 SHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSP 690
S PTL+D+N KV GM VA+CGTVGSGKSSLLS ILGEVPKISG LK+CG KAY+AQSP
Sbjct: 614 SPIPTLRDMNFKVSQGMNVAICGTVGSGKSSLLSSILGEVPKISGNLKVCGRKAYIAQSP 673
Query: 691 WIQSGKIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQR 750
WIQSGK+E+NILFGK M+RE Y+ VL+ACSL KDLEIL F DQTV+GERGINLSGGQKQR
Sbjct: 674 WIQSGKVEENILFGKPMEREWYDRVLEACSLNKDLEILPFHDQTVIGERGINLSGGQKQR 733
Query: 751 IQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADL 810
IQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL KTV+YVTHQVEFLP ADL
Sbjct: 734 IQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRHKTVIYVTHQVEFLPEADL 793
Query: 811 VLVIKDGKITQAGKYTDVINSGTDFMELVDAHKQALSTLDSIEGRPLSEKGSANGENDGT 870
+LV+KDGKITQAGKY ++++SGTDFMELV AH +AL+T+DS E SEK + + EN+
Sbjct: 794 ILVMKDGKITQAGKYHEILDSGTDFMELVGAHTEALATIDSCETGYASEKSTTDKENE-- 851
Query: 871 SATDGVVKEVENKEVQNDREDKVAEPQRQLVQEEEREKGKVEFSVYWKYITAAYGGVLVP 930
+ +KE Q + D +P QLVQEEEREKGKV F+VY KY+ AYGG ++P
Sbjct: 852 --------VLHHKEKQENGSDN--KPSGQLVQEEEREKGKVGFTVYKKYMALAYGGAVIP 901
Query: 931 FILLAQTLFQILQIASNYWIAWATPASKDIKPRVTGSMLLIVFVALAFGSSFCILARSTL 990
IL+ Q LFQ+L I SNYW+ W TP SKD++P V+G L++V+V LA SSFCIL R+ L
Sbjct: 902 LILVVQVLFQLLSIGSNYWMTWVTPVSKDVEPPVSGFTLILVYVLLAVASSFCILIRALL 961
Query: 991 LATAGYKTATLLFNKMHYCIFRAPMSFFDATPSGRIINRASTDQSAVDLSIPALIGSFAF 1050
+A G+K AT LF +MH IFRA MSFFDATP GRI+NRASTDQS DL +P A
Sbjct: 962 VAMTGFKMATELFTQMHLRIFRASMSFFDATPMGRILNRASTDQSVADLRLPGQFAYVAI 1021
Query: 1051 SIIRVLGVIGVMSLVAWQVFIVFIPVIATCIWYQQYYISSARELSRLVGVCKAPLIQHFA 1110
+ I +LG+IGV+ VAWQV IVFIPV+A C WY+QYYIS+AREL+RL G+ ++P++ HF+
Sbjct: 1022 AAINILGIIGVIVQVAWQVLIVFIPVVAACAWYRQYYISAARELARLAGISRSPVVHHFS 1081
Query: 1111 ETVSGSTTIRSFDQESRFIDTNMELMDGYSRPTFHVAAAMEWLGFRLDMLSNITFAFSLV 1170
ET+SG TTIRSFDQE RF M L D YSR FH AMEWL FRL++LS FA SLV
Sbjct: 1082 ETLSGITTIRSFDQEPRFRGDIMRLSDCYSRLKFHSTGAMEWLCFRLELLSTFAFASSLV 1141
Query: 1171 FLISIPKGFIDPAIAGLAVTYGLTLNNLQAMLIWLACQMENKIISVERIFQYTCIPSEPP 1230
L+S P+G I+P++AGLA+TY L LN LQA LIW C +ENK+ISVER+ QYT IPSEPP
Sbjct: 1142 ILVSAPEGVINPSLAGLAITYALNLNTLQATLIWTLCDLENKMISVERMLQYTNIPSEPP 1201
Query: 1231 LEIEESRPNHSWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKST 1290
L IE +RP SWPS G+I + +LQVRY PH+P VL G++CTFPG KTGIVGRTG GKST
Sbjct: 1202 LVIETTRPEKSWPSRGEITICNLQVRYGPHLPMVLHGLTCTFPGGLKTGIVGRTGCGKST 1261
Query: 1291 LIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNVDPLEEYT 1350
LIQTLFRIVEPAAG+I IDGI+I IGLHDLR+RLSIIPQDP MFEGT+RSN+DPLEEYT
Sbjct: 1262 LIQTLFRIVEPAAGEIRIDGINILSIGLHDLRSRLSIIPQDPTMFEGTIRSNLDPLEEYT 1321
Query: 1351 DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDE 1410
D+QIWEALD CQLGDEVRKKE KLDS V+ENG+NWS+GQRQLVCLGRVLLKR K+L+LDE
Sbjct: 1322 DDQIWEALDNCQLGDEVRKKELKLDSPVSENGQNWSVGQRQLVCLGRVLLKRSKLLVLDE 1381
Query: 1411 ATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLL 1470
ATAS+DTATDNLIQ++LR HF+DCTVITIAHRI+SVIDSDMVLLL GLI+E+DSP +LL
Sbjct: 1382 ATASIDTATDNLIQETLRHHFADCTVITIAHRISSVIDSDMVLLLDQGLIKEHDSPARLL 1441
Query: 1471 ENKSSSFSQLVAEYTQRSSS 1490
E++SS FS+LVAEYT S S
Sbjct: 1442 EDRSSLFSKLVAEYTTSSES 1461
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q7GB25|AB5C_ARATH ABC transporter C family member 5 OS=Arabidopsis thaliana GN=ABCC5 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 1439 bits (3726), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 730/1399 (52%), Positives = 962/1399 (68%), Gaps = 65/1399 (4%)
Query: 127 KLPMLLKIWWGFYVFISCYCLIVDIVLYQKQVNLPIQ-------YLVSDVVSVITGLFPC 179
KLP L++IWW F F C C +Y L I+ ++V+++ F C
Sbjct: 140 KLPFLVRIWW-FLAFSICLC-----TMYVDGRRLAIEGWSRCSSHVVANLAVTPALGFLC 193
Query: 180 FVGF--MSKIE-GEDTLILQEPLLKVDSGESEGTVASIKSRGADTVTPYSNAGLFSVLTY 236
F+ + +S I+ + LQEPLL E A +K VTPYS AGL S++T
Sbjct: 194 FLAWRGVSGIQVTRSSSDLQEPLL------VEEEAACLK------VTPYSTAGLVSLITL 241
Query: 237 TWINSLIALGNKKTLDLEDVPQL---DSGNSVVGVFATFKNKLETEAGLGSGLTTLKLIK 293
+W++ L++ G+K+ L+L+D+P L D S V + + ++E + L +
Sbjct: 242 SWLDPLLSAGSKRPLELKDIPLLAPRDRAKSSYKVLKSNWKRCKSE----NPSKPPSLAR 297
Query: 294 AMFRSVWKDVLLTALVAIVCTLATYVGPYLIDTLVQYLSGKRDFENEGYALVSAFCVAKL 353
A+ +S WK+ A+ A + TL +YVGPYLI V YL GK F +EGY L F +KL
Sbjct: 298 AIMKSFWKEAACNAVFAGLNTLVSYVGPYLISYFVDYLGGKEIFPHEGYVLAGIFFTSKL 357
Query: 354 VECLCQRFFVFRLEQLGIRLRAALIAMIYNKGLKLSSQAKQGNTSGEIINFMTVDAERVA 413
+E + R + ++ LG+ +R+AL AM+Y KGLKLSS AKQ +TSGEI+N+M VD +R+
Sbjct: 358 IETVTTRQWYMGVDILGMHVRSALTAMVYRKGLKLSSIAKQNHTSGEIVNYMAVDVQRIG 417
Query: 414 ELSWYIHDPWLFLFEVALSFLILYKSLGIASVAAFFGTVIFMLVNVPLSTVQEKFQNELM 473
+ SWY+HD W+ ++ L+ ILYKS+GIA+VA T+I +LV +PL+ VQE +Q++LM
Sbjct: 418 DYSWYLHDIWMLPMQIVLALAILYKSVGIAAVATLVATIISILVTIPLAKVQEDYQDKLM 477
Query: 474 KSKDERMKATSEILRNMRILKLQGWELKFLSKTIDLRKSESGWLKRCLYTSSITSFVFWC 533
+KDERM+ TSE LRNMR+LKLQ WE ++ + ++R+ E GWL++ LY+ + +F+FW
Sbjct: 478 TAKDERMRKTSECLRNMRVLKLQAWEDRYRVRLEEMREEEYGWLRKALYSQAFVTFIFWS 537
Query: 534 APTFVSVITFGTCILLKVPLESGKVLSAIATFRLLQILIYKLPAIISMTIQTKVSLQRIA 593
+P FV+ +TF T I L L +G VLSA+ATFR+LQ + P ++SM QTKVSL RI+
Sbjct: 538 SPIFVAAVTFATSIFLGTQLTAGGVLSALATFRILQEPLRNFPDLVSMMAQTKVSLDRIS 597
Query: 594 SFFCLDELQPDLVEKQPRGSSETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCG 653
F +ELQ D PRG S AIEI DG F WD S PTL I +KV GMRVAVCG
Sbjct: 598 GFLQEEELQEDATVVIPRGLSNIAIEIKDGVFCWDPFSSRPTLSGIQMKVEKGMRVAVCG 657
Query: 654 TVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMDRERYN 713
TVGSGKSS +SCILGE+PKISG +++CGT YV+QS WIQSG IE+NILFG M++ +Y
Sbjct: 658 TVGSGKSSFISCILGEIPKISGEVRICGTTGYVSQSAWIQSGNIEENILFGSPMEKTKYK 717
Query: 714 AVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAV 773
V+ ACSL+KD+E+ S GDQT++GERGINLSGGQKQR+Q+ARALYQDADIYL DDPFSA+
Sbjct: 718 NVIQACSLKKDIELFSHGDQTIIGERGINLSGGQKQRVQLARALYQDADIYLLDDPFSAL 777
Query: 774 DAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVINSGT 833
DAHTGS LF++ +L L KTV++VTHQVEFLPAADL+LV+K+G+I Q+GKY D++ +GT
Sbjct: 778 DAHTGSDLFRDYILSALAEKTVVFVTHQVEFLPAADLILVLKEGRIIQSGKYDDLLQAGT 837
Query: 834 DFMELVDAHKQALSTLDSIEGRPLSEKGSANGENDGTSATDGVVKEVENKEVQNDREDKV 893
DF LV AH +A+ +D P SE N D V+ ++ +ND E
Sbjct: 838 DFKALVSAHHEAIEAMDI--PSPSSEDSDENPIRDSL-----VLHNPKSDVFENDIETLA 890
Query: 894 AEPQR-----------------------QLVQEEEREKGKVEFSVYWKYITAAYGGVLVP 930
E Q QLVQEEER KGKV VY Y+ AAY G L+P
Sbjct: 891 KEVQEGGSASDLKAIKEKKKKAKRSRKKQLVQEEERVKGKVSMKVYLSYMGAAYKGALIP 950
Query: 931 FILLAQTLFQILQIASNYWIAWATPASKDIKPRVTGSMLLIVFVALAFGSSFCILARSTL 990
I+LAQ FQ LQIASN+W+AWA P ++ + +V ++LLIV+ ALAFGSS I R+ L
Sbjct: 951 LIILAQAAFQFLQIASNWWMAWANPQTEGDESKVDPTLLLIVYTALAFGSSVFIFVRAAL 1010
Query: 991 LATAGYKTATLLFNKMHYCIFRAPMSFFDATPSGRIINRASTDQSAVDLSIPALIGSFAF 1050
+AT G A LF M +FRAPMSFFD+TP+GRI+NR S DQS VDL IP +G FA
Sbjct: 1011 VATFGLAAAQKLFLNMLRSVFRAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFAS 1070
Query: 1051 SIIRVLGVIGVMSLVAWQVFIVFIPVIATCIWYQQYYISSARELSRLVGVCKAPLIQHFA 1110
+ I++ G++ VM+ V WQVF++ +PV C W Q+YY++S+REL R+V + K+P+I F
Sbjct: 1071 TTIQLCGIVAVMTNVTWQVFLLVVPVAVACFWMQKYYMASSRELVRIVSIQKSPIIHLFG 1130
Query: 1111 ETVSGSTTIRSFDQESRFIDTNMELMDGYSRPTFHVAAAMEWLGFRLDMLSNITFAFSLV 1170
E+++G+ TIR F QE RFI N+ L+D + RP F AA+EWL R+++LS + FAF +V
Sbjct: 1131 ESIAGAATIRGFGQEKRFIKRNLYLLDCFVRPFFCSIAAIEWLCLRMELLSTLVFAFCMV 1190
Query: 1171 FLISIPKGFIDPAIAGLAVTYGLTLNNLQAMLIWLACQMENKIISVERIFQYTCIPSEPP 1230
L+S P G IDP++AGLAVTYGL LN + I C++ENKIIS+ERI+QY+ I E P
Sbjct: 1191 LLVSFPHGTIDPSMAGLAVTYGLNLNGRLSRWILSFCKLENKIISIERIYQYSQIVGEAP 1250
Query: 1231 LEIEESRPNHSWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKST 1290
IE+ RP SWP+ G I+L D++VRYA ++P VL G+SC FPG KK GIVGRTGSGKST
Sbjct: 1251 AIIEDFRPPSSWPATGTIELVDVKVRYAENLPTVLHGVSCVFPGGKKIGIVGRTGSGKST 1310
Query: 1291 LIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNVDPLEEYT 1350
LIQ LFR++EP AG+I ID IDIS IGLHDLR+RL IIPQDP +FEGT+R+N+DPLEE++
Sbjct: 1311 LIQALFRLIEPTAGKITIDNIDISQIGLHDLRSRLGIIPQDPTLFEGTIRANLDPLEEHS 1370
Query: 1351 DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDE 1410
D++IWEALDK QLGD VR K+ KLDS V ENG+NWS+GQRQLV LGR LLK+ KIL+LDE
Sbjct: 1371 DDKIWEALDKSQLGDVVRGKDLKLDSPVLENGDNWSVGQRQLVSLGRALLKQAKILVLDE 1430
Query: 1411 ATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLL 1470
ATASVDTATDNLIQ+ +R F DCTV TIAHRI +VIDSD+VL+LS G + E+D+P +LL
Sbjct: 1431 ATASVDTATDNLIQKIIRTEFEDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPARLL 1490
Query: 1471 ENKSSSFSQLVAEYTQRSS 1489
E+KSS F +LV EY+ RS+
Sbjct: 1491 EDKSSMFLKLVTEYSSRST 1509
|
Pump for glutathione S-conjugates. Involved in regulation of K(+) and Na(+) cell content. Mediates resistance to NaCl and Li(+), confers sensitivity to sulfonylurea drugs such as glibenclamide (inducer of stomatal opening), and required for stomatal opening regulation by auxin, abscisic acid (ABA) and external Ca(2+). Transports oestradiol-17-(beta-D-glucuronide) (E(2)17G). Involved in the root auxin content regulation that controls the transition from primary root elongation to lateral root formation. Plays a role in ABA-mediated germination inhibition. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q9M1C7|AB9C_ARATH ABC transporter C family member 9 OS=Arabidopsis thaliana GN=ABCC9 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 1397 bits (3617), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 730/1460 (50%), Positives = 992/1460 (67%), Gaps = 42/1460 (2%)
Query: 50 KERFKNKKALWYKLTLVCCFVVSLSSLVLCLLSYFYWYGNGRSYDQLVILFDFGV-RTLG 108
K+ K++ Y ++L+C + L + LL F R D V +F V ++
Sbjct: 71 KQSITVKQSFSYNISLLCSVSI-LGTHCFILLLLFRDSVVSRC-DSSVSVFSAEVSQSFS 128
Query: 109 WGAICVYLRTVFLNLRQPKL---PMLLKIWWGFYVFISCYCLIVDIVLYQKQVNLPIQYL 165
W +++ V + +R+ +L P +L+ WW FI + + + + P+++
Sbjct: 129 W----LFVSVVVVKIRERRLVKFPWMLRSWW-LCSFILSFSFDAHFITAKHE---PLEF- 179
Query: 166 VSDVVSVITGLFPCFVGFMSKIEGEDTLIL------QEPLLKVDSGESEGTVASIKSRGA 219
D +TGL I G+ L EPLL D E K
Sbjct: 180 -QDYAD-LTGLLASLFLLAVSIRGKTGFHLLESSGNTEPLLLGDQTEQN------KKDSY 231
Query: 220 DTVTPYSNAGLFSVLTYTWINSLIALGNKKTLDLEDVPQLDSGNSVVGVFATFKNKLET- 278
+ +PY NA LF +T++WIN L +LG K+ L+ +DVP +D +S F KL+T
Sbjct: 232 SSSSPYGNATLFQRITFSWINPLFSLGYKRPLEKDDVPDIDVKDSARFCSHAFDQKLKTT 291
Query: 279 --EAGLGSGLTTLKLIKAMFRSVWKDVLLTALVAIVCTLATYVGPYLIDTLVQYLSGKRD 336
+ G G+ ++ R VW+ + A+ A+V Y+GPYLI+ V++LS K+
Sbjct: 292 KEKEGPGNAF----FYNSVLRYVWRKAAINAVFAVVNASTAYIGPYLINDFVEFLSEKQS 347
Query: 337 FE-NEGYALVSAFCVAKLVECLCQRFFVFRLEQLGIRLRAALIAMIYNKGLKLSSQAKQG 395
N GY L F AK+VE + QR ++F QLG+RLRAALI+ IY KGL LSSQ++Q
Sbjct: 348 QSLNHGYLLALGFLTAKIVETVTQRQWIFGARQLGLRLRAALISHIYQKGLVLSSQSRQS 407
Query: 396 NTSGEIINFMTVDAERVAELSWYIHDPWLFLFEVALSFLILYKSLGIASVAAFFGTVIFM 455
+TSGEIIN+M+VD +R+ + WY+++ W+ ++ + IL K LG+ ++AA T++ M
Sbjct: 408 HTSGEIINYMSVDVQRITDFIWYVNNIWMLPIQIFSAIYILQKHLGLGALAALVTTLMVM 467
Query: 456 LVNVPLSTVQEKFQNELMKSKDERMKATSEILRNMRILKLQGWELKFLSKTIDLRKSESG 515
N PL+ +Q +Q+++M +KD+RMKATSEIL+NM+ILKLQ W+ +FL+K LRK E
Sbjct: 468 ACNYPLTRLQRNYQSDIMNAKDDRMKATSEILKNMKILKLQAWDNQFLNKVKTLRKKEYD 527
Query: 516 WLKRCLYTSSITSFVFWCAPTFVSVITFGTCILLKVPLESGKVLSAIATFRLLQILIYKL 575
L + L + T+F+ W AP+ +SV+TF TC+L+ V L +G VLSA+ATF++LQ I+ L
Sbjct: 528 CLWKSLRLQAFTTFILWGAPSLISVVTFVTCMLMGVKLTAGAVLSALATFQMLQSPIFGL 587
Query: 576 PAIISMTIQTKVSLQRIASFFCLDELQPDLVEKQPRGSSETAIEIADGNFSWDISSHNPT 635
P ++S +Q+KVS RIAS+ E Q D VE + +E ++EI +G FSW+ S PT
Sbjct: 588 PDLLSALVQSKVSADRIASYLQQSETQKDAVEYCSKDHTELSVEIENGAFSWEPESSRPT 647
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSG 695
L DI LKV GM+VAVCG VGSGKSSLLS ILGE+ K+ GT+++ G +AYV QSPWI SG
Sbjct: 648 LDDIELKVKSGMKVAVCGAVGSGKSSLLSSILGEIQKLKGTVRVSGKQAYVPQSPWILSG 707
Query: 696 KIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIAR 755
I DNILFG + E+Y + AC+L KD E+ S GD T +GERGIN+SGGQKQRIQIAR
Sbjct: 708 TIRDNILFGSMYESEKYERTVKACALIKDFELFSNGDLTEIGERGINMSGGQKQRIQIAR 767
Query: 756 ALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIK 815
A+YQ+ADIYL DDPFSAVDAHTG LF++ L+G+L KTVLYVTHQVEFLPAADL+LV++
Sbjct: 768 AVYQNADIYLLDDPFSAVDAHTGRELFEDCLMGILKDKTVLYVTHQVEFLPAADLILVMQ 827
Query: 816 DGKITQAGKYTDVINSGTDFMELVDAHKQALSTLDSIEGRPLSEKGSANGENDGTSATDG 875
+G++ QAGK+ +++ F LV AH +AL ++ SIE S + G D T++
Sbjct: 828 NGRVMQAGKFEELLKQNIGFEVLVGAHNEALDSILSIEK---SSRNFKEGSKDDTASIAE 884
Query: 876 VVKEVENKEVQNDREDKVAEPQRQLVQEEEREKGKVEFSVYWKYITAAYGGVLVPFILLA 935
++ + E E+K E + LVQ+EE EKG + VY Y+T GG+LVPFI+LA
Sbjct: 885 SLQTHCDSEHNISTENKKKEAK--LVQDEETEKGVIGKEVYLAYLTTVKGGLLVPFIILA 942
Query: 936 QTLFQILQIASNYWIAWATPASKDIKPRVTGSMLLIVFVALAFGSSFCILARSTLLATAG 995
Q+ FQ+LQIASNYW+AW P + + P++ +L+V+ LA GSS C+LAR+ L+A G
Sbjct: 943 QSCFQMLQIASNYWMAWTAPPTAESIPKLGMGRILLVYALLAAGSSLCVLARTILVAIGG 1002
Query: 996 YKTATLLFNKMHYCIFRAPMSFFDATPSGRIINRASTDQSAVDLSIPALIGSFAFSIIRV 1055
TA F++M IFRAPMSFFD+TP+GRI+NRASTDQS +DL + +G AFSII++
Sbjct: 1003 LSTAETFFSRMLCSIFRAPMSFFDSTPTGRILNRASTDQSVLDLEMAVKLGWCAFSIIQI 1062
Query: 1056 LGVIGVMSLVAWQVFIVFIPVIATCIWYQQYYISSARELSRLVGVCKAPLIQHFAETVSG 1115
+G I VMS VAWQV ++FIPV C++YQ+YY +ARELSR+ GV +AP++ HFAE+++G
Sbjct: 1063 VGTIFVMSQVAWQVCVIFIPVAVACVFYQRYYTPTARELSRMSGVERAPILHHFAESLAG 1122
Query: 1116 STTIRSFDQESRFIDTNMELMDGYSRPTFHVAAAMEWLGFRLDMLSNITFAFSLVFLISI 1175
+TTIR+FDQ RFI +N+ L+D +SRP FHVA+AMEWL FRL++LS+ FAFSLV L+++
Sbjct: 1123 ATTIRAFDQRDRFISSNLVLIDSHSRPWFHVASAMEWLSFRLNLLSHFVFAFSLVLLVTL 1182
Query: 1176 PKGFIDPAIAGLAVTYGLTLNNLQAMLIWLACQMENKIISVERIFQYTCIPSEPPLEIEE 1235
P+G I+P+IAGL VTYGL+LN LQA +IW C ENK+ISVERI QY+ IPSE PL I+
Sbjct: 1183 PEGVINPSIAGLGVTYGLSLNVLQATVIWNICNAENKMISVERILQYSKIPSEAPLVIDG 1242
Query: 1236 SRPNHSWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTL 1295
RP +WP+ G I RDLQVRYA H P VL+ I+C FPG KK G+VGRTGSGKSTLIQ L
Sbjct: 1243 HRPLDNWPNVGSIVFRDLQVRYAEHFPAVLKNITCEFPGGKKIGVVGRTGSGKSTLIQAL 1302
Query: 1296 FRIVEPAAGQILIDGIDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIW 1355
FRIVEP+ G I+ID +DI+ IGLHDLR+RL IIPQDP +F+GT+R N+DPL +YTD +IW
Sbjct: 1303 FRIVEPSQGTIVIDNVDITKIGLHDLRSRLGIIPQDPALFDGTIRLNLDPLAQYTDHEIW 1362
Query: 1356 EALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASV 1415
EA+DKCQLGD +R K+ +LD+ V ENGENWS+GQRQLVCLGRVLLK+ IL+LDEATASV
Sbjct: 1363 EAIDKCQLGDVIRAKDERLDATVVENGENWSVGQRQLVCLGRVLLKKSNILVLDEATASV 1422
Query: 1416 DTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSS 1475
D+ATD +IQ+ + Q F D TV+TIAHRI +VI+SD+VL+LS G I E+DSP KLL+ + S
Sbjct: 1423 DSATDGVIQKIINQEFKDRTVVTIAHRIHTVIESDLVLVLSDGRIAEFDSPAKLLQREDS 1482
Query: 1476 SFSQLVAEYTQRSSSSLAGN 1495
FS+L+ EY+ RS+ N
Sbjct: 1483 FFSKLIKEYSLRSNHFAGSN 1502
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q7FB56|AB15C_ARATH Putative ABC transporter C family member 15 OS=Arabidopsis thaliana GN=ABCC15 PE=5 SV=2 | Back alignment and function description |
|---|
Score = 1226 bits (3172), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 596/1091 (54%), Positives = 791/1091 (72%), Gaps = 42/1091 (3%)
Query: 405 MTVDAERVAELSWYIHDPWLFLFEVALSFLILYKSLGIASVAAFFGTVIFMLVNVPLSTV 464
M+VD +R+ + WY++ W+ ++ + IL K LG+ ++AA T++ M N PL+ +
Sbjct: 1 MSVDVQRITDFIWYVNSIWMLPIQIFSAIYILQKHLGLGALAALVTTLMVMACNYPLTRL 60
Query: 465 QEKFQNELMKSKDERMKATSEILRNMRILKLQGWELKFLSKTIDLRKSESGWLKRCLYTS 524
Q +Q+++M +KD+RMKATSEIL+NM+ILKLQ W+ +FL+K LRK E L + L
Sbjct: 61 QRNYQSDIMNAKDDRMKATSEILKNMKILKLQAWDNQFLNKVKTLRKKEYDCLWKSLRLQ 120
Query: 525 SITSFVFWCAPTFVSVITFGTCILLKVPLESGKVLSAIATFRLLQILIYKLPAIISMTIQ 584
T+F+ W AP+ +SV+TF TC+L+ V L +G VLSA+ATF++LQ I+ LP ++S +Q
Sbjct: 121 DFTTFILWGAPSLISVVTFVTCMLMGVKLTAGAVLSALATFQMLQSPIFGLPDLLSALVQ 180
Query: 585 TKVSLQRIASFFCLDELQPDLVEKQPRGSSETAIEIADGNFSWDISSHNPTLKDINLKVF 644
+KVS RIAS+ E Q D VE +E ++EI +G FSW+ S PTL DI LKV
Sbjct: 181 SKVSADRIASYLQQSETQKDAVEYCSNDHTEFSVEIENGAFSWEPESSRPTLDDIELKVK 240
Query: 645 HGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFG 704
GM+VA+CG VGSGKSSL S ILGE+ K+ GT+++ G +AYV QSPWI SG I DNILFG
Sbjct: 241 SGMKVAICGAVGSGKSSLPSSILGEIQKLKGTVRVSGKQAYVPQSPWILSGTIRDNILFG 300
Query: 705 KEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIY 764
+ E+Y + AC+L KD E+ S GD T +GERGIN+SGGQKQRIQIARA+YQ+ADIY
Sbjct: 301 SIYESEKYERTVKACALIKDFELFSNGDLTEIGERGINMSGGQKQRIQIARAVYQNADIY 360
Query: 765 LFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGK 824
L DDPFSAVDAHTG LF++ L+G+L KTVLYVTHQVEFLPAADL+LV+++G++ QAGK
Sbjct: 361 LLDDPFSAVDAHTGRELFEDCLMGILKDKTVLYVTHQVEFLPAADLILVMQNGRVMQAGK 420
Query: 825 YTDVINSGTDFMELVDAHKQALSTLDSIEGRPLSEKGSANGENDGTSATDGVVKEVENKE 884
+ +++ F + L+ DS E++ ++ ENK
Sbjct: 421 FEELLKQNIGF--------EVLTQCDS--------------EHNIST---------ENK- 448
Query: 885 VQNDREDKVAEPQRQLVQEEEREKGKVEFSVYWKYITAAYGGVLVPFILLAQTLFQILQI 944
+ + +LVQ+EE EKG + VY Y+T GG+LVPFI+LAQ+ FQ+LQI
Sbjct: 449 ----------KKEAKLVQDEETEKGVIGKEVYLTYLTTVKGGLLVPFIILAQSCFQMLQI 498
Query: 945 ASNYWIAWATPASKDIKPRVTGSMLLIVFVALAFGSSFCILARSTLLATAGYKTATLLFN 1004
ASNYW+AW P + + P++ +L+V+ LA GSS C+LAR+ L+A G TA F+
Sbjct: 499 ASNYWMAWTAPPTAESIPKLGMGRILLVYALLAAGSSLCVLARTILVAIGGLSTAETFFS 558
Query: 1005 KMHYCIFRAPMSFFDATPSGRIINRASTDQSAVDLSIPALIGSFAFSIIRVLGVIGVMSL 1064
+M IFRAPMS+FD+TP+GRI+NRASTDQS +DL + +G AFSII+++G I VMS
Sbjct: 559 RMLCSIFRAPMSYFDSTPTGRILNRASTDQSVLDLEMAVKLGWCAFSIIQIVGTIFVMSQ 618
Query: 1065 VAWQVFIVFIPVIATCIWYQQYYISSARELSRLVGVCKAPLIQHFAETVSGSTTIRSFDQ 1124
VAWQV ++FIPV C++YQ+YY + RELSR+ GV +AP++ HFAE+++G+TTIR+FDQ
Sbjct: 619 VAWQVCVIFIPVAVACVFYQRYYTPTERELSRMSGVERAPILHHFAESLAGATTIRAFDQ 678
Query: 1125 ESRFIDTNMELMDGYSRPTFHVAAAMEWLGFRLDMLSNITFAFSLVFLISIPKGFIDPAI 1184
RFI +N+ L+D +SRP FHVA+AMEWL FRL++LS+ FAFSLV L+++P+G I+P+I
Sbjct: 679 RDRFISSNLVLIDSHSRPWFHVASAMEWLSFRLNLLSHFVFAFSLVLLVTLPEGVINPSI 738
Query: 1185 AGLAVTYGLTLNNLQAMLIWLACQMENKIISVERIFQYTCIPSEPPLEIEESRPNHSWPS 1244
AGL VTYGL+LN LQA +IW C ENK+ISVERI Q++ IPSE PL I++ RP +WP+
Sbjct: 739 AGLGVTYGLSLNVLQATVIWNICNAENKMISVERILQHSKIPSEAPLVIDDQRPLDNWPN 798
Query: 1245 HGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAG 1304
G I RDLQVRYA H P VL+ I+C FPG KK G+VGRTGSGKSTLIQ LFRIVEP+ G
Sbjct: 799 VGSIVFRDLQVRYAEHFPAVLKNITCAFPGGKKIGVVGRTGSGKSTLIQALFRIVEPSHG 858
Query: 1305 QILIDGIDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLG 1364
I+ID +DI+ IGLHDLR+RL IIPQD +F+GT+R N+DPL +YTD +IWEALDKCQLG
Sbjct: 859 TIVIDNVDITKIGLHDLRSRLGIIPQDNALFDGTIRLNLDPLAQYTDREIWEALDKCQLG 918
Query: 1365 DEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQ 1424
D +R K+ KLD+ V ENGENWS+GQRQLVCLGRVLLK+ IL+LDEATASVD+ATD +IQ
Sbjct: 919 DVIRAKDEKLDATVVENGENWSVGQRQLVCLGRVLLKKSNILVLDEATASVDSATDGVIQ 978
Query: 1425 QSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSFSQLVAEY 1484
+ + Q F D TV+TIAHRI +VI+SD+VL+LS G I E+DSP KLL+ + S FS+L+ EY
Sbjct: 979 KIINQEFKDRTVVTIAHRIHTVIESDLVLVLSDGRIAEFDSPAKLLQREDSFFSKLIKEY 1038
Query: 1485 TQRSSSSLAGN 1495
+ RS+ N
Sbjct: 1039 SLRSNHFAGSN 1049
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q7DM58|AB4C_ARATH ABC transporter C family member 4 OS=Arabidopsis thaliana GN=ABCC4 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 1100 bits (2846), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 602/1458 (41%), Positives = 897/1458 (61%), Gaps = 45/1458 (3%)
Query: 48 GSKERFKNKKALWYKLTLVCCFVVSLSSLVLCLLSYFYWYGNGRSYDQLVILFDFGVRTL 107
G + R + W+K T+ ++S S+VLC+L++ R ++ + LF
Sbjct: 86 GIRGRTPTRTTAWFKTTVAVTVLLSFCSVVLCVLAFTGKRRTQRPWNLIDPLF------- 138
Query: 108 GWGAICV-YLRTVFLNLRQPKL-----PMLLKIWWGFYVFISCYCLIVDIVLYQKQVNLP 161
W V +L L L Q + P+ L+I+W ++ + I +
Sbjct: 139 -WLIHAVTHLVIAVLVLHQKRFAALNHPLSLRIYWISSFVLTSLFAVTGIFHFLSDAATS 197
Query: 162 IQYLVSDVVSVITGLFPCFVGFMSKIEGEDTLILQEPLLKVDSGESEGTVASIKSRGADT 221
++ DV S + F+ ++ + G L+ E +S S++ +D
Sbjct: 198 LR--AEDVASFFSFPLTAFL-LIASVRGITGLVTAE----TNSPTKPSDAVSVEK--SDN 248
Query: 222 VTPYSNAGLFSVLTYTWINSLIALGNKKTLDLEDVPQLDSGNSVVGVFATFKNKLETEAG 281
V+ Y++A +FS + W+N L++ G K L LE VP L + + F E+
Sbjct: 249 VSLYASASVFSKTFWLWMNPLLSKGYKSPLTLEQVPTLSPEHKAERLALLF----ESSWP 304
Query: 282 LGSGLTTLKLIKAMFRSVWKDVLLTALVAIVCTLATYVGPYLIDTLVQYLSGKRDFENEG 341
S ++ + + R WK++L TA++AIV YVGP LI + V + SGKR +G
Sbjct: 305 KPSENSSHPIRTTLLRCFWKEILFTAILAIVRLGVMYVGPVLIQSFVDFTSGKRSSPWQG 364
Query: 342 YALVSAFCVAKLVECLCQRFFVFRLEQLGIRLRAALIAMIYNKGLKLSSQAKQGNTSGEI 401
Y LV VAK VE L F F ++LG+ +R+ LI +Y KGLKL+ A+Q + G+I
Sbjct: 365 YYLVLILLVAKFVEVLTTHQFNFDSQKLGMLIRSTLITALYKKGLKLTGSARQNHGVGQI 424
Query: 402 INFMTVDAERVAELSWYIHDPWLFLFEVALSFLILYKSLG---IASVAAFFGTVIFMLVN 458
+N+M VDA++++++ +H WL +V ++ ++LY SLG I +V G +F+L+
Sbjct: 425 VNYMAVDAQQLSDMMLQLHAIWLMPLQVTVALVLLYGSLGASVITAVIGLTGVFVFILLG 484
Query: 459 VPLSTVQEKFQNELMKSKDERMKATSEILRNMRILKLQGWELKFLSKTIDLRKSESGWLK 518
+ +Q LM ++D RMKAT+E+L MR++K Q WE F + + R E GWL
Sbjct: 485 ---TQRNNGYQFSLMGNRDSRMKATNEMLNYMRVIKFQAWENHFNKRILKFRDMEFGWLS 541
Query: 519 RCLYTSSITSFVFWCAPTFVSVITFGTCILLKVPLESGKVLSAIATFRLLQILIYKLP-A 577
+ LY+ + V W P +S +TF T + L V L++G V + F++LQ I P +
Sbjct: 542 KFLYSIAGNIIVLWSTPVLISALTFATALALGVKLDAGTVFTTTTIFKILQEPIRTFPQS 601
Query: 578 IISMTIQTKVSLQRIASFFCLDELQPDLVEKQPRGSSETAIEIADGNFSWDISSHNPTLK 637
+IS++ Q +SL R+ S+ EL D VE+ TA+E+ DG+FSWD + P L
Sbjct: 602 MISLS-QAMISLGRLDSYMMSKELSEDAVERALGCDGNTAVEVRDGSFSWDDEDNEPALS 660
Query: 638 DINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKI 697
DIN KV G A+ GTVGSGKSSLL+ +LGE+ +ISG +++CG+ YVAQ+ WI++G +
Sbjct: 661 DINFKVKKGELTAIVGTVGSGKSSLLASVLGEMHRISGQVRVCGSTGYVAQTSWIENGTV 720
Query: 698 EDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARAL 757
+DNILFG M RE+YN VL+ CSLEKDL+++ FGD+T +GERGINLSGGQKQRIQ+ARA+
Sbjct: 721 QDNILFGLPMVREKYNKVLNVCSLEKDLQMMEFGDKTEIGERGINLSGGQKQRIQLARAV 780
Query: 758 YQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDG 817
YQ+ D+YL DD FSAVDAHTGS +FK+ + G L KTVL VTHQV+FL D +LV++DG
Sbjct: 781 YQECDVYLLDDVFSAVDAHTGSDIFKKCVRGALKGKTVLLVTHQVDFLHNVDCILVMRDG 840
Query: 818 KITQAGKYTDVINSGTDFMELVDAHKQALSTLDS------IEGRPLSEKGSANGENDGTS 871
KI ++GKY ++++SG DF ELV AH+ ++ +++ + P + S + + TS
Sbjct: 841 KIVESGKYDELVSSGLDFGELVAAHETSMELVEAGADSAAVATSPRTPT-SPHASSPRTS 899
Query: 872 ATDGVVKEVENKEVQNDREDKVAEPQRQLVQEEEREKGKVEFSVYWKYITAAYGGVLVPF 931
+ ++ ++ +++ + E +L++EEERE G+V VY +Y T AYG +
Sbjct: 900 MESPHLSDLNDEHIKSFLGSHIVEDGSKLIKEEERETGQVSLGVYKQYCTEAYGWWGIVL 959
Query: 932 ILLAQTLFQILQIASNYWIAWATPASKDIKPRVTGSMLLIVFVALAFGSSFCILARSTLL 991
+L +Q +AS+YW+A+ T A I S+ ++ +V +A S + RS +
Sbjct: 960 VLFFSLTWQGSLMASDYWLAYETSAKNAIS--FDASVFILGYVIIALVSIVLVSIRSYYV 1017
Query: 992 ATAGYKTATLLFNKMHYCIFRAPMSFFDATPSGRIINRASTDQSAVDLSIPALIGSFAFS 1051
G KTA + F ++ I APMSFFD TPSGRI++RASTDQ+ VD+ IP ++G
Sbjct: 1018 THLGLKTAQIFFRQILNSILHAPMSFFDTTPSGRILSRASTDQTNVDILIPFMLGLVVSM 1077
Query: 1052 IIRVLGVIGVMSLVAWQVFIVFIPVIATCIWYQQYYISSARELSRLVGVCKAPLIQHFAE 1111
+L + V AW IP+ IWY+ YY++S+REL+R+ + KAP+I HF+E
Sbjct: 1078 YTTLLSIFIVTCQYAWPTAFFVIPLGWLNIWYRNYYLASSRELTRMDSITKAPIIHHFSE 1137
Query: 1112 TVSGSTTIRSFDQESRFIDTNMELMDGYSRPTFHVAAAMEWLGFRLDMLSNITFAFSLVF 1171
+++G TIRSF ++ F N++ ++ R FH + EWLGFRL+++ + S +F
Sbjct: 1138 SIAGVMTIRSFRKQELFRQENVKRVNDNLRMDFHNNGSNEWLGFRLELVGSWVLCISALF 1197
Query: 1172 LISIPKGFIDPAIAGLAVTYGLTLNNLQAMLIWLACQMENKIISVERIFQYTCIPSEPPL 1231
++ +P I P GL+++YGL+LN++ I+++C +ENK++SVERI Q+T IPSE
Sbjct: 1198 MVLLPSNVIRPENVGLSLSYGLSLNSVLFFAIYMSCFVENKMVSVERIKQFTDIPSESEW 1257
Query: 1232 EIEESRPNHSWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTL 1291
E +E+ P +WP HG + L DL+VRY P+ P VL+GI+ G +K G+VGRTGSGKSTL
Sbjct: 1258 ERKETLPPSNWPFHGNVHLEDLKVRYRPNTPLVLKGITLDIKGGEKVGVVGRTGSGKSTL 1317
Query: 1292 IQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNVDPLEEYTD 1351
IQ LFR+VEP+ G+I+IDGIDIS +GLHDLR+R IIPQ+PV+FEGTVRSN+DP E+Y+D
Sbjct: 1318 IQVLFRLVEPSGGKIIIDGIDISTLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPTEQYSD 1377
Query: 1352 EQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEA 1411
E+IW++L++CQL D V K KLDS V +NGENWS+GQRQL+CLGRV+LKR ++L LDEA
Sbjct: 1378 EEIWKSLERCQLKDVVATKPEKLDSLVVDNGENWSVGQRQLLCLGRVMLKRSRLLFLDEA 1437
Query: 1412 TASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLE 1471
TASVD+ TD +IQ+ +R+ F+ CT+I+IAHRI +V+D D VL++ G +E+DSP +LLE
Sbjct: 1438 TASVDSQTDAVIQKIIREDFASCTIISIAHRIPTVMDGDRVLVIDAGKAKEFDSPARLLE 1497
Query: 1472 NKSSSFSQLVAEYTQRSS 1489
+ S F+ LV EY RS+
Sbjct: 1498 -RPSLFAALVQEYALRSA 1514
|
Involved in the regulation of stomatal aperture. May function as a high-capacity pump for folates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q9LZJ5|AB14C_ARATH ABC transporter C family member 14 OS=Arabidopsis thaliana GN=ABCC14 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1097 bits (2836), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 601/1466 (40%), Positives = 893/1466 (60%), Gaps = 62/1466 (4%)
Query: 61 YKLTLVCCFVVSLSSLVLCLLSYFYWYGNGRSYDQLVILFDFGVRTLGWGAICVYLRTVF 120
+K T+V V+S SLVLC+ ++F + D L L V + + ++L+
Sbjct: 97 FKTTVVVTIVLSFCSLVLCVSAFFTTRTKLKLVDTLFWLIH-AVTNVVIAVLVLHLK--- 152
Query: 121 LNLRQPKLPMLLKIWWGFYVFISCYCLIVDIVLYQKQVNLPIQYLVSDVVSVITGLFP-C 179
P P+ L+I+W F ++ + I+ DV S I+ FP
Sbjct: 153 -RFASPSHPLTLRIYWVFNFVVTTLFTVSGILHLLSDDPAAASLRADDVASFIS--FPLT 209
Query: 180 FVGFMSKIEGEDTLILQEPLLKVDSGESEGTVASIKSRGADTVTPYSNAGLFSVLTYTWI 239
V + I+G +++ + + ++ V ++ V+ Y++A S + W+
Sbjct: 210 AVLLLVSIKGSTGVVVTTSNVTAPAKSNDVVVEK-----SENVSLYASASFISKTFWLWM 264
Query: 240 NSLIALGNKKTLDLEDVPQLDSGNSVVGVFATFKNKLET--EAGLGSGLTTLKLIKAMFR 297
N L+ G K L+L+ VP L + + F++K E TTL R
Sbjct: 265 NPLLRKGYKSPLNLDQVPTLSPEHRAEKLATLFESKWPKPQENSRNPVRTTL------IR 318
Query: 298 SVWKDVLLTALVAIVCTLATYVGPYLIDTLVQYLSGKRDFENEGYALVSAFCVAKLVECL 357
WK++ TA++AI+ YVGP LI + V + SGKR ++GY LV +AK VE L
Sbjct: 319 CFWKEIAFTAVLAIIRLSVIYVGPVLIQSFVDFTSGKRSSPSQGYYLVLILLIAKFVEVL 378
Query: 358 CQRFFVFRLEQLGIRLRAALIAMIYNKGLKLSSQAKQGNTSGEIINFMTVDAERVAELSW 417
F F ++LG+ +R+ LI +Y KGLKL+ A+Q + G+I+N+M VDA++++++
Sbjct: 379 STHQFNFNSQKLGMLIRSTLITALYKKGLKLTGSARQNHGVGQIVNYMAVDAQQLSDMML 438
Query: 418 YIHDPWLFLFEVALSFLILYKSLG---IASVAAFFGTVIFMLVNVPLSTVQEKFQNELMK 474
+H WL +VA + ++LY +LG + +V G +F+L+ + ++Q LM
Sbjct: 439 QLHAIWLMPLQVAAAIVLLYNTLGPSVVTTVIGLTGIFVFILLG---TKRNNRYQFSLMM 495
Query: 475 SKDERMKATSEILRNMRILKLQGWELKFLSKTIDLRKSESGWLKRCLYTSSITSFVFWCA 534
++D RMKAT+E+L MR++K Q WE F + + R+ E GWL + LY+ + V W
Sbjct: 496 NRDSRMKATNEMLNYMRVIKFQAWEDHFNERILKFREMEFGWLSKFLYSIAGNIIVLWST 555
Query: 535 PTFVSVITFGTCILLKVPLESGKVLSAIATFRLLQILIYKLP-AIISMTIQTKVSLQRIA 593
P +S +TF T + L V L++G V + F++LQ I P ++IS++ Q +SL R+
Sbjct: 556 PVLISALTFTTAVFLGVKLDAGTVFTTTTIFKILQEPIRTFPQSMISLS-QAMISLGRLD 614
Query: 594 SFFCLDELQPDLVEKQPRGSSETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCG 653
++ EL + VE+ A+EI DG+FSWD P +++IN +V G A+ G
Sbjct: 615 AYMMSRELSEETVERSQGCDGNVAVEIKDGSFSWDDEDDEPAIENINFEVKKGELAAIVG 674
Query: 654 TVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMDRERYN 713
TVGSGKSSLL+ +LGE+ K+SG +++CGT AYVAQ+ WIQ+G ++DNILFG M+R +YN
Sbjct: 675 TVGSGKSSLLASVLGEMHKLSGKVRVCGTTAYVAQTSWIQNGTVQDNILFGLPMNRSKYN 734
Query: 714 AVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAV 773
VL C LEKD++I+ FGDQT +GERGINLSGGQKQRIQ+ARA+YQ++D+YL DD FSAV
Sbjct: 735 EVLKVCCLEKDMQIMEFGDQTEIGERGINLSGGQKQRIQLARAVYQESDVYLLDDVFSAV 794
Query: 774 DAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVINSGT 833
DAHTGS +FK+ + G L KT+L VTHQV+FL D +LV++DG I Q+GKY ++++SG
Sbjct: 795 DAHTGSDIFKKCVRGALKGKTILLVTHQVDFLHNVDRILVMRDGMIVQSGKYDELVSSGL 854
Query: 834 DFMELVDAHKQALSTLD----------------------SIEG--RPLSEKGSANGENDG 869
DF ELV AH+ ++ ++ SIE +P S K +
Sbjct: 855 DFGELVAAHETSMELVEAGSASATAANVPMASPITQRSISIESPRQPKSPKVHRTTSMES 914
Query: 870 ------TSATDGVVKEVENKEVQNDREDKVAEPQRQLVQEEEREKGKVEFSVYWKYITAA 923
TS + E+ ++ +++ + E +L++EEERE G+V F VY Y T A
Sbjct: 915 PRVLRTTSMESPRLSELNDESIKSFLGSNIPEDGSRLIKEEEREVGQVSFQVYKLYSTEA 974
Query: 924 YGGVLVPFILLAQTLFQILQIASNYWIAWATPASKDIKPRVTGSMLLIVFVALAFGSSFC 983
YG + ++ +Q +AS+YW+A+ T A ++ ++ + V+V +A S
Sbjct: 975 YGWWGMILVVFFSVAWQASLMASDYWLAYETSAKNEVS--FDATVFIRVYVIIAAVSIVL 1032
Query: 984 ILARSTLLATAGYKTATLLFNKMHYCIFRAPMSFFDATPSGRIINRASTDQSAVDLSIPA 1043
+ R+ + G KTA + F ++ + APMSFFD TPSGRI++RASTDQ+ VD+ IP
Sbjct: 1033 VCLRAFYVTHLGLKTAQIFFKQILNSLVHAPMSFFDTTPSGRILSRASTDQTNVDIFIPF 1092
Query: 1044 LIGSFAFSIIRVLGVIGVMSLVAWQVFIVFIPVIATCIWYQQYYISSARELSRLVGVCKA 1103
+IG A +L + V AW IP+ IWY+ YY++S+REL+RL + KA
Sbjct: 1093 MIGLVATMYTTLLSIFIVTCQYAWPTVFFIIPLGWLNIWYRGYYLASSRELTRLDSITKA 1152
Query: 1104 PLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGYSRPTFHVAAAMEWLGFRLDMLSNI 1163
P+I HF+E+++G TIR+F ++ F N++ ++ R FH + EWLGFRL+++ +
Sbjct: 1153 PVIHHFSESIAGVMTIRAFKKQPMFRQENVKRVNANLRMDFHNNGSNEWLGFRLELIGSW 1212
Query: 1164 TFAFSLVFLISIPKGFIDPAIAGLAVTYGLTLNNLQAMLIWLACQMENKIISVERIFQYT 1223
S +F++ +P I P GL+++YGL+LN + I+L+C +ENK++SVERI Q+T
Sbjct: 1213 VLCISALFMVMLPSNIIKPENVGLSLSYGLSLNGVLFWAIYLSCFIENKMVSVERIKQFT 1272
Query: 1224 CIPSEPPLEIEESRPNHSWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGR 1283
IP+E EI+ESRP +WP G I L D++VRY P+ P VL+G++ G +K G+VGR
Sbjct: 1273 DIPAEAKWEIKESRPPPNWPYKGNIRLEDVKVRYRPNTPLVLKGLTIDIKGGEKIGVVGR 1332
Query: 1284 TGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNV 1343
TGSGKSTLIQ LFR+VEP+ G+I+IDGIDI +GLHDLR+R IIPQ+PV+FEGTVRSN+
Sbjct: 1333 TGSGKSTLIQVLFRLVEPSGGKIIIDGIDICTLGLHDLRSRFGIIPQEPVLFEGTVRSNI 1392
Query: 1344 DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRR 1403
DP E+Y+DE+IW++L++CQL D V K KLDS V +NGENWS+GQRQL+CLGRV+LKR
Sbjct: 1393 DPTEKYSDEEIWKSLERCQLKDVVASKPEKLDSLVADNGENWSVGQRQLLCLGRVMLKRS 1452
Query: 1404 KILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEY 1463
+IL LDEATASVD+ TD +IQ+ +R+ FSDCT+I+IAHRI +V+D D VL++ G +EY
Sbjct: 1453 RILFLDEATASVDSQTDAMIQKIIREDFSDCTIISIAHRIPTVMDCDRVLVIDAGKAKEY 1512
Query: 1464 DSPRKLLENKSSSFSQLVAEYTQRSS 1489
DSP +LLE + S F+ LV EY RS+
Sbjct: 1513 DSPVRLLE-RQSLFAALVQEYALRSA 1537
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q9LYS2|AB10C_ARATH ABC transporter C family member 10 OS=Arabidopsis thaliana GN=ABCC10 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 1072 bits (2773), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 577/1364 (42%), Positives = 841/1364 (61%), Gaps = 37/1364 (2%)
Query: 131 LLKIWWGFYVFISCYCLIVDIVLYQKQVNLPIQYLVSDVVSVITGLFPCFVGFMSKIEGE 190
LL I+ FY +S CL V+ ++ ++ + V + + L + G+ GE
Sbjct: 121 LLSIFSFFYGLVSS-CLSVNNAVFGDELAVRTILDVLLLPGSVLLLLSAYKGYRFDESGE 179
Query: 191 DTLILQEPLLKVDSGESEGTVASIKSRGADTVTPYSNAGLFSVLTYTWINSLIALGNKKT 250
+L EPL ++G+S G S K+ + V+ ++ AGLFS L++ W+NSLI GN K
Sbjct: 180 SSLY--EPL---NAGDSNGF--SEKADFDNRVSQFAKAGLFSTLSFWWLNSLIKRGNVKD 232
Query: 251 LDLEDVPQLDSGNSVVGVFATFK-NKLETEAGLGSGLTTLKLIKAMFRSVWKDVLLTALV 309
L+ ED+P+L ++ F+ N +E + LGS ++K VW+++L +
Sbjct: 233 LEEEDIPELRKEERAETCYSLFEENLIEQKRRLGSSCQP-SILKVTVLCVWRELLTSGFF 291
Query: 310 AIVCTLATYVGPYLIDTLVQYLSGKRDFENEGYALVSAFCVAKLVECLCQRFFVFRLEQL 369
A + +A GP L++ + G F EG L +K++E L QR + FR +
Sbjct: 292 AFMKIVAVSAGPLLLNAFILVAEGNASFRYEGLVLAVLLFFSKMIESLSQRQWYFRCRIV 351
Query: 370 GIRLRAALIAMIYNKGLKLSSQAKQGNTSGEIINFMTVDAERVAELSWYIHDPWLFLFEV 429
G+R+R+ L A I K L+L++ ++ ++ EI+N+ TVDA R+ E ++ H W F++
Sbjct: 352 GLRVRSLLTAAINKKQLRLNNSSRLIHSGSEIMNYATVDAYRIGEFPYWFHQLWTTSFQL 411
Query: 430 ALSFLILYKSLGIASVAAFFGTVIFMLVNVPLSTVQEKFQNELMKSKDERMKATSEILRN 489
++ IL+ S+G+A+ +A ++ +L N P++ +Q KFQ+ELM S+DER+KA +E L N
Sbjct: 412 LIALGILFHSVGVATFSALAVIILTVLCNAPIAKLQNKFQSELMTSQDERLKACNESLVN 471
Query: 490 MRILKLQGWELKFLSKTIDLRKSESGWLKRCLYTSSITSFVFWCAPTFVSVITFGTCILL 549
M++LKL WE F LR E LK + + +FW +P FVS TF TC L
Sbjct: 472 MKVLKLYAWESHFKKVIEKLRNIELKSLKAVQMRKAYNAVLFWSSPVFVSAATFATCYFL 531
Query: 550 KVPLESGKVLSAIATFRLLQILIYKLPAIISMTIQTKVSLQRIASFFCLDELQP-DLVEK 608
+PL + V + +AT RL+Q + +P +I +TIQ KV+ RIA+F ELQ + K
Sbjct: 532 DIPLRASNVFTFVATLRLVQDPVRMIPDVIGVTIQAKVAFSRIATFLEAPELQGGERRRK 591
Query: 609 QPRGSSETAIEIADGNFSWD-ISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCIL 667
Q ++ AI I +FSW+ S P L++++L+V G +VAVCG VGSGKS+LL+ IL
Sbjct: 592 QRSEGNQNAIIIKSASFSWEEKGSTKPNLRNVSLEVKFGEKVAVCGEVGSGKSTLLAAIL 651
Query: 668 GEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMDRERYNAVLDACSLEKDLEI 727
GE P +SGT+ GT AYV+Q+ WIQ+G I DNILFG MD RY + SL+KDLE+
Sbjct: 652 GETPCVSGTIDFYGTIAYVSQTAWIQTGTIRDNILFGGVMDEHRYRETIQKSSLDKDLEL 711
Query: 728 LSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLL 787
L GDQT +GERG+NLSGGQKQRIQ+ARALYQDADIYL DDPFSAVDAHT S LF+E ++
Sbjct: 712 LPDGDQTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFQEYVM 771
Query: 788 GLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVINSGTDFMELVDAHKQALS 847
L K VL VTHQV+FLPA D VL++ DG+IT+A Y +++ DF +LV+AH++
Sbjct: 772 DALAGKAVLLVTHQVDFLPAFDSVLLMSDGEITEADTYQELLARSRDFQDLVNAHRETAG 831
Query: 848 TLDSIEGRPLSEKGSANGENDGTSATDGVVKEVENKEVQNDREDKVAEPQRQLVQEEERE 907
+ + A + K V+ + KV +P R L+++EERE
Sbjct: 832 S-------------------ERVVAVENPTKPVKEINRVISSQSKVLKPSR-LIKQEERE 871
Query: 908 KGKVEFSVYWKYITAAYGGVLVPFILLAQTLFQILQIASNYWIAWATPASKDIKPRVTGS 967
KG Y +Y+ G + LAQ F + QI N W+A A+ D P+V+
Sbjct: 872 KGDTGLRPYIQYMNQNKGYIFFFIASLAQVTFAVGQILQNSWMA----ANVD-NPQVSTL 926
Query: 968 MLLIVFVALAFGSSFCILARSTLLATAGYKTATLLFNKMHYCIFRAPMSFFDATPSGRII 1027
L++V++ + S C++ RS + K++ LF+++ +FRAPMSF+D+TP GRI+
Sbjct: 927 KLILVYLLIGLCSVLCLMVRSVCVVIMCMKSSASLFSQLLNSLFRAPMSFYDSTPLGRIL 986
Query: 1028 NRASTDQSAVDLSIPALIGSFAFSIIRVLGVIGVMSLVAWQVFIVFIPVIATCIWYQQYY 1087
+R S+D S VDL +P + S + +GV+++V WQV V +P++ Q+YY
Sbjct: 987 SRVSSDLSIVDLDVPFGLIFVVASSVNTGCSLGVLAIVTWQVLFVSVPMVYLAFRLQKYY 1046
Query: 1088 ISSARELSRLVGVCKAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGYSRPTFHVA 1147
+A+EL R+ G ++ + H AE+V+G+ TIR+FD+E RF ++ L+D + P FH
Sbjct: 1047 FQTAKELMRINGTTRSYVANHLAESVAGAITIRAFDEEERFFKKSLTLIDTNASPFFHSF 1106
Query: 1148 AAMEWLGFRLDMLSNITFAFSLVFLISIPKGFIDPAIAGLAVTYGLTLNNLQAMLIWLAC 1207
AA EWL RL+ +S I A + +I +P G G+A++YGL+LN + C
Sbjct: 1107 AANEWLIQRLETVSAIVLASTAFCMILLPTGTFSSGFIGMALSYGLSLNMGLVYSVQNQC 1166
Query: 1208 QMENKIISVERIFQYTCIPSEPPLEIEESRPNHSWPSHGKIDLRDLQVRYAPHMPFVLRG 1267
+ N IISVER+ QYT + E P IEE+RP +WP G++++ DLQ+RY P VL+G
Sbjct: 1167 YLANWIISVERLNQYTHLTPEAPEVIEETRPPVNWPVTGRVEISDLQIRYRRESPLVLKG 1226
Query: 1268 ISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSI 1327
ISCTF G K GIVGRTGSGK+TLI LFR+VEP G+I++DG+DIS IG+HDLR+R I
Sbjct: 1227 ISCTFEGGHKIGIVGRTGSGKTTLISALFRLVEPVGGKIVVDGVDISKIGVHDLRSRFGI 1286
Query: 1328 IPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSM 1387
IPQDP +F GTVR N+DPL +++D +IWE L KCQL + V++KE LDS V E+G NWSM
Sbjct: 1287 IPQDPTLFNGTVRFNLDPLCQHSDAEIWEVLGKCQLKEVVQEKENGLDSLVVEDGSNWSM 1346
Query: 1388 GQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVI 1447
GQRQL CLGR +L+R ++L+LDEATAS+D ATD ++Q+++R+ F+DCTVIT+AHRI +V+
Sbjct: 1347 GQRQLFCLGRAVLRRSRVLVLDEATASIDNATDLILQKTIRREFADCTVITVAHRIPTVM 1406
Query: 1448 DSDMVLLLSHGLIEEYDSPRKLLENKSSSFSQLVAEYTQRSSSS 1491
D MVL +S G I EYD P KL+++++S F +LV EY +S+
Sbjct: 1407 DCTMVLSISDGRIVEYDEPMKLMKDENSLFGKLVKEYWSHYNSA 1450
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q8LGU1|AB8C_ARATH ABC transporter C family member 8 OS=Arabidopsis thaliana GN=ABCC8 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 1049 bits (2712), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 559/1265 (44%), Positives = 803/1265 (63%), Gaps = 24/1265 (1%)
Query: 226 SNAGLFSVLTYTWINSLIALGNKKTLDLEDVPQLDSGNSVVGVFATFKNKLETEAGLGSG 285
+ AG FS+L+++W+N L++LG KK L ED+P + + + F +T G S
Sbjct: 204 ATAGFFSILSFSWMNPLLSLGFKKPLSPEDIPSVVPEDEAQLAYKKFSQAWDTLLGDESS 263
Query: 286 LTTLKLI-KAMFRSVWKDVLLTALVAIVCTLATYVGPYLIDTLVQYL-SGKRDFENEGYA 343
L+ +A+ + +K+ + A+ A + T A P ++ V Y S RD N G+
Sbjct: 264 TKERNLVFRAVVKVYFKENIFIAVFAFLRTFAVVSLPLMLYVFVDYANSDHRDLRN-GFF 322
Query: 344 LVSAFCVAKLVECLCQRFFVFRLEQLGIRLRAALIAMIYNKGLKLSSQAKQGNTSGEIIN 403
++ + KLVE L R + F + G+R+R+AL+ Y K LKLSS ++ ++SGEI+N
Sbjct: 323 NLACLVMLKLVESLTMRHWYFASRRSGMRIRSALMVAAYKKQLKLSSLGRKRHSSGEIVN 382
Query: 404 FMTVDAERVAELSWYIHDPWLFLFEVALSFLILYKSLGIASVAAFFGTVIFMLVNVPLST 463
++ VDA R+ E W+ H W ++ LS +L+ +G + ++ L+N+P +
Sbjct: 383 YIAVDAYRMGEFLWWFHSGWSLSLQLLLSTAVLFGVVGAGAFPGLILLLLCGLLNLPFAK 442
Query: 464 VQEKFQNELMKSKDERMKATSEILRNMRILKLQGWELKFLSKTIDLRKSESGWLKRCLYT 523
+ + Q + M ++D+R+++TSEIL +M+++KLQ WE +F K R E WL + T
Sbjct: 443 MLQNCQTQFMIAQDKRLRSTSEILNSMKVIKLQSWEDEFKKKIESCRDDEFTWLAKAQLT 502
Query: 524 SSITSFVFWCAPTFVSVITFGTCILLK-VPLESGKVLSAIATFRLLQILIYKLPAIISMT 582
+ SF++W +PT VS + F C LLK PL + + + +AT R++ + +P IS
Sbjct: 503 KAFGSFLYWMSPTIVSSVVFLGCALLKSAPLNASTIFTVLATLRVMSEPVKIIPDAISAI 562
Query: 583 IQTKVSLQRIASFFCLDELQPDLVEKQPRGSSETAIEIADGNFSWDISSHNPTLKDINLK 642
IQ VS QR+ +F DEL+ D +E+ +S TA++I GNF W+ + PTL++I+L+
Sbjct: 563 IQGNVSFQRLNNFLLDDELKMDEIERSGLDASGTAVDIQVGNFGWEPETKIPTLRNIHLE 622
Query: 643 VFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNIL 702
+ HG +VAVCG VG+GKSSLL +LGE+PK+SGT+K+ G+ AYV+Q+ WIQSG I DNIL
Sbjct: 623 IKHGQKVAVCGPVGAGKSSLLHAVLGEIPKVSGTVKVFGSIAYVSQTSWIQSGTIRDNIL 682
Query: 703 FGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDAD 762
+GK M+ RYNA + AC+L+KD+ GD T +G+RGINLSGGQKQRIQ+ARA+Y DAD
Sbjct: 683 YGKPMESRRYNAAIKACALDKDMNGFGHGDLTEIGQRGINLSGGQKQRIQLARAVYADAD 742
Query: 763 IYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQA 822
+YL DDPFSAVDAHT LF + + L KTV+ VTHQVEFL D +LV+++G ITQ+
Sbjct: 743 VYLLDDPFSAVDAHTAGVLFHKCVEDSLKEKTVILVTHQVEFLSEVDQILVMEEGTITQS 802
Query: 823 GKYTDVINSGTDFMELVDAHKQALSTLDSIEGRPLSEKGSANGENDGTSATDGVVKEVEN 882
GKY +++ GT F +LV+AH A++ L PL A+ E+ G +G +E+ N
Sbjct: 803 GKYEELLMMGTAFQQLVNAHNDAVTVL------PL-----ASNESLGDLRKEGKDREIRN 851
Query: 883 KEVQNDREDKVAE---PQRQLVQEEEREKGKVEFSVYWKYITAAYGGVLVPFILLAQTLF 939
V E+++ + P QL QEEE+E G V + YI + G L+ +L Q F
Sbjct: 852 MTVVEKIEEEIEKTDIPGVQLTQEEEKESGYVGMKPFLDYIGVSRGWCLLWSSVLGQVGF 911
Query: 940 QILQIASNYWIAWATPASKDIKPRVTGSMLLIVFVALAFGSSFCILARSTLLATAGYKTA 999
+ Q AS YW+A+A P++T +ML+ V+ ++ S+ + AR+ A G K +
Sbjct: 912 VVFQAASTYWLAFAIGI-----PKITNTMLIGVYSIISTLSAGFVYARAITTAHLGLKAS 966
Query: 1000 TLLFNKMHYCIFRAPMSFFDATPSGRIINRASTDQSAVDLSIPALIGSFAFSIIRVLGVI 1059
F+ +F+APM FFD+TP GRI+ RAS+D + +D +P + + +
Sbjct: 967 KAFFSGFTNAVFKAPMLFFDSTPVGRILTRASSDLNVLDYDVPFAFIFVVAPAVELTAAL 1026
Query: 1060 GVMSLVAWQVFIVFIPVIATCIWYQQYYISSARELSRLVGVCKAPLIQHFAETVSGSTTI 1119
+M+ V WQV I+ + +A Q YY++SAREL R+ G KAP++ + AET G TI
Sbjct: 1027 LIMTYVTWQVIIIALLALAATKVVQDYYLASARELIRINGTTKAPVMNYAAETSLGVVTI 1086
Query: 1120 RSFDQESRFIDTNMELMDGYSRPTFHVAAAMEWLGFRLDMLSNITFAFSLVFLISIPKGF 1179
R+F RF + L+D + F AAMEW+ R++ L N+T + LI IPKG+
Sbjct: 1087 RAFGTAERFFKNYLNLVDADAVLFFLSNAAMEWVILRIETLQNVTLFTCALLLILIPKGY 1146
Query: 1180 IDPAIAGLAVTYGLTLNNLQAMLIWLACQMENKIISVERIFQYTCIPSEPPLEIEESRPN 1239
I P + GL+++Y LTL Q L C + N IISVERI QY IP EPP I++ RP
Sbjct: 1147 IAPGLVGLSLSYALTLTQTQVFLTRWYCTLSNSIISVERIKQYMNIPEEPPAIIDDKRPP 1206
Query: 1240 HSWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIV 1299
SWPS+G I L++L++RY P+ P VL+GISCTF + G+VGRTGSGKSTLI LFR+V
Sbjct: 1207 SSWPSNGTIHLQELKIRYRPNAPLVLKGISCTFREGTRVGVVGRTGSGKSTLISALFRLV 1266
Query: 1300 EPAAGQILIDGIDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALD 1359
EPA+G ILIDGIDIS IGL DLR +LSIIPQ+P +F G +R+N+DPL Y+D++IW+AL+
Sbjct: 1267 EPASGCILIDGIDISKIGLKDLRMKLSIIPQEPTLFRGCIRTNLDPLGVYSDDEIWKALE 1326
Query: 1360 KCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTAT 1419
KCQL + KLDS V++ GENWS+GQRQL CLGRVLLKR KIL+LDEATAS+D+AT
Sbjct: 1327 KCQLKTTISNLPNKLDSSVSDEGENWSVGQRQLFCLGRVLLKRNKILVLDEATASIDSAT 1386
Query: 1420 DNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSFSQ 1479
D +IQ+ +R+ F+DCTVIT+AHR+ +VIDSDMV++LS G + EY+ P KL+E S FS+
Sbjct: 1387 DAIIQRIIREEFADCTVITVAHRVPTVIDSDMVMVLSFGDLVEYNEPSKLMET-DSYFSK 1445
Query: 1480 LVAEY 1484
LVAEY
Sbjct: 1446 LVAEY 1450
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1495 | ||||||
| 224061172 | 1488 | multidrug resistance protein ABC transpo | 0.990 | 0.995 | 0.716 | 0.0 | |
| 359494293 | 1488 | PREDICTED: ABC transporter C family memb | 0.989 | 0.993 | 0.714 | 0.0 | |
| 359494289 | 1488 | PREDICTED: ABC transporter C family memb | 0.989 | 0.993 | 0.706 | 0.0 | |
| 359494168 | 1485 | PREDICTED: ABC transporter C family memb | 0.986 | 0.993 | 0.708 | 0.0 | |
| 356499431 | 2054 | PREDICTED: ABC transporter C family memb | 0.987 | 0.718 | 0.697 | 0.0 | |
| 356553519 | 1494 | PREDICTED: ABC transporter C family memb | 0.987 | 0.987 | 0.693 | 0.0 | |
| 356501620 | 1493 | PREDICTED: ABC transporter C family memb | 0.987 | 0.988 | 0.692 | 0.0 | |
| 356566246 | 1490 | PREDICTED: ABC transporter C family memb | 0.980 | 0.983 | 0.685 | 0.0 | |
| 147800077 | 1458 | hypothetical protein VITISV_007527 [Viti | 0.972 | 0.997 | 0.692 | 0.0 | |
| 449465513 | 1504 | PREDICTED: ABC transporter C family memb | 0.988 | 0.982 | 0.678 | 0.0 |
| >gi|224061172|ref|XP_002300362.1| multidrug resistance protein ABC transporter family [Populus trichocarpa] gi|222847620|gb|EEE85167.1| multidrug resistance protein ABC transporter family [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 2179 bits (5646), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1069/1491 (71%), Positives = 1249/1491 (83%), Gaps = 10/1491 (0%)
Query: 1 MYSGTDFLLKQAFLRGASGSLHLFLLLGLFGLWVWKKLKVGEGDHSGGSKERF-KNKKAL 59
M S T FLLK FLRG + SLHL LLL LF +V KKL+VG+G GSKERF NK+
Sbjct: 1 MDSATYFLLKPIFLRGFTASLHLVLLLALFVSFVLKKLRVGDGVQ--GSKERFSNNKRFF 58
Query: 60 WYKLTLVCCFVVSLSSLVLCLLSYFYWYGNGRSYDQLVILFDFGVRTLGWGAICVYLRTV 119
+YK TL C VS +LVL L+SYFYWY NG S D+LV L DF + L W A+ VYL T
Sbjct: 59 FYKQTLFCSLGVSSLNLVLSLVSYFYWYTNGWSDDKLVTLLDFVLTALSWAALSVYLHTQ 118
Query: 120 FLNLRQPKLPMLLKIWWGFYVFISCYCLIVDIVLYQKQVNLPIQYLVSDVVSVITGLFPC 179
N + K P LL++WW + ISCYCL+VD +++ K + IQYLVSD+VSV T F C
Sbjct: 119 LFNSGETKFPFLLRVWWALFFSISCYCLVVDFLVFHKHGSFEIQYLVSDLVSVFTAFFLC 178
Query: 180 FVGFMSKIEGEDTLILQEPLLKVDSGESEGTVASIKSRGADTVTPYSNAGLFSVLTYTWI 239
+VGF+ + E +DTL L++PLL DS G + S KSRG D++TPY+NAGLFS+LT++W+
Sbjct: 179 YVGFL-RNECQDTL-LEQPLLNGDSSSING-LESSKSRGGDSLTPYANAGLFSILTFSWM 235
Query: 240 NSLIALGNKKTLDLEDVPQLDSGNSVVGVFATFKNKLETEAGLGSGLTTLKLIKAMFRSV 299
SLIA GNKKTLDLEDVPQL S +SVVG F+ FKNKLE+++G S +T KL+KA+ S
Sbjct: 236 GSLIAFGNKKTLDLEDVPQLHSVDSVVGAFSVFKNKLESDSGAASRVTAFKLLKALLLSA 295
Query: 300 WKDVLLTALVAIVCTLATYVGPYLIDTLVQYLSGKRDFENEGYALVSAFCVAKLVECLCQ 359
WK++LLTAL+AI+ T A+YVGPYLID+ VQ L G+ +++N+GY L S F VAK+VECL Q
Sbjct: 296 WKEILLTALLAIIYTSASYVGPYLIDSFVQCLDGRGEYKNQGYILASTFFVAKVVECLSQ 355
Query: 360 RFFVFRLEQLGIRLRAALIAMIYNKGLKLSSQAKQGNTSGEIINFMTVDAERVAELSWYI 419
R + FRL+Q+GIRLRA MIYNK L LSSQ+KQG TSGEIIN MTVDAER+++ SWY+
Sbjct: 356 RHWFFRLQQIGIRLRAVATTMIYNKALTLSSQSKQGQTSGEIINIMTVDAERISDFSWYM 415
Query: 420 HDPWLFLFEVALSFLILYKSLGIASVAAFFGTVIFMLVNVPLSTVQEKFQNELMKSKDER 479
HDPWL + +V L+ LILYK+LG+A+V+ F T++ ML+N PL +QE FQ++LM+SKD+R
Sbjct: 416 HDPWLVILQVGLALLILYKNLGLATVSTFVATIVVMLLNYPLGRLQEHFQDKLMESKDKR 475
Query: 480 MKATSEILRNMRILKLQGWELKFLSKTIDLRKSESGWLKRCLYTSSITSFVFWCAPTFVS 539
MKAT+EILRNMRILKLQGWE+KFLSK +DLR+ E+GWLK+ +Y S++ SFVFW AP+ V+
Sbjct: 476 MKATTEILRNMRILKLQGWEMKFLSKILDLRQVETGWLKKYVYNSAMISFVFWGAPSLVA 535
Query: 540 VITFGTCILLKVPLESGKVLSAIATFRLLQILIYKLPAIISMTIQTKVSLQRIASFFCLD 599
V TFGTC+L+ PLESGK+LSA+ATFR+LQ IY LP +SM +QTKVSL RIASF LD
Sbjct: 536 VATFGTCMLIGTPLESGKILSALATFRILQEPIYNLPDTVSMIVQTKVSLDRIASFISLD 595
Query: 600 ELQPDLVEKQPRGSSETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGK 659
+L+ D++EK P GSS+TA+EI DGNFSWD+SS + TLK+I+ +VFHGMRVAVCGTVGSGK
Sbjct: 596 DLKNDVLEKLPIGSSDTAVEIVDGNFSWDVSSPSATLKNIDFQVFHGMRVAVCGTVGSGK 655
Query: 660 SSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMDRERYNAVLDAC 719
SSLLSCILGEVP+ISGTLK+CGTKAYVAQSPWIQSGKIE+NILFGK+MDRERY VL+AC
Sbjct: 656 SSLLSCILGEVPQISGTLKICGTKAYVAQSPWIQSGKIEENILFGKDMDRERYERVLEAC 715
Query: 720 SLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGS 779
SL+KDLEILSFGDQTV+GERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGS
Sbjct: 716 SLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGS 775
Query: 780 HLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVINSGTDFMELV 839
HLFKE LLGLLNSKTV+YVTHQVEFLPAADL+LV+KDG+ITQAGKY D++NSG+DFMELV
Sbjct: 776 HLFKEALLGLLNSKTVIYVTHQVEFLPAADLILVMKDGRITQAGKYDDILNSGSDFMELV 835
Query: 840 DAHKQALSTLDSIEGRPLSEKGSANGENDGTSATDGVVKEVENKEVQNDREDKVAEPQRQ 899
AHK ALS DS + SE SA EN S+ D ++++ NK+ QN +ED VA P+ Q
Sbjct: 836 GAHKAALSAFDSKQAESASENESAGKEN---SSGDRILQKEGNKDSQNGKEDVVAGPKAQ 892
Query: 900 LVQEEEREKGKVEFSVYWKYITAAYGGVLVPFILLAQTLFQILQIASNYWIAWATPASKD 959
L+QEEEREKG V F +YWK+IT AYGG LVPFILLAQ LFQILQI SNYW+AWATP SKD
Sbjct: 893 LIQEEEREKGSVGFPIYWKFITTAYGGALVPFILLAQILFQILQIGSNYWMAWATPVSKD 952
Query: 960 IKPRVTGSMLLIVFVALAFGSSFCILARSTLLATAGYKTATLLFNKMHYCIFRAPMSFFD 1019
+KP V+G L++V+V LA GSSFCILAR+TLL TAGYKTATLLFNKMH CIFRAPMSFFD
Sbjct: 953 MKPVVSGYTLIMVYVCLAIGSSFCILARATLLVTAGYKTATLLFNKMHLCIFRAPMSFFD 1012
Query: 1020 ATPSGRIINRASTDQSAVDLSIPALIGSFAFSIIRVLGVIGVMSLVAWQVFIVFIPVIAT 1079
+TPSGRI+NRASTDQSAV+ IP +G+ AFS I++LG+I VMS VAWQVFIVFIPVIA
Sbjct: 1013 STPSGRILNRASTDQSAVETQIPYQVGALAFSSIQLLGIIAVMSQVAWQVFIVFIPVIAA 1072
Query: 1080 CIWYQQYYISSARELSRLVGVCKAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGY 1139
CIWYQ+YYI SARELSRLVGVCKAP+IQHF+ET+SG+ TIRSFDQ+SRF +TNM + D Y
Sbjct: 1073 CIWYQRYYIPSARELSRLVGVCKAPVIQHFSETISGAATIRSFDQQSRFQETNMIVTDAY 1132
Query: 1140 SRPTFHVAAAMEWLGFRLDMLSNITFAFSLVFLISIPKGFIDPAIAGLAVTYGLTLNNLQ 1199
SRP FH AAAMEWL FRLDM S+ITFAFSLVFL+S PKG IDPAIAGLAVTYGL LN LQ
Sbjct: 1133 SRPKFHAAAAMEWLCFRLDMFSSITFAFSLVFLVSFPKG-IDPAIAGLAVTYGLNLNMLQ 1191
Query: 1200 AMLIWLACQMENKIISVERIFQYTCIPSEPPLEIEESRPNHSWPSHGKIDLRDLQVRYAP 1259
A +IW C ENKIISVERI QY IPSEPPL IE SRPN SWPSHG++++ +LQVRYAP
Sbjct: 1192 AWVIWNLCNCENKIISVERILQYMSIPSEPPLIIEASRPNRSWPSHGEVEINNLQVRYAP 1251
Query: 1260 HMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLH 1319
HMP VLRG++CTFPG KTGIVGRTGSGKSTLIQTLFRIVEPAAG+I+ID IDISLIGLH
Sbjct: 1252 HMPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPAAGRIMIDDIDISLIGLH 1311
Query: 1320 DLRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVT 1379
DLR+RLSIIPQDP MFEGTVRSN+DPLEEYTDEQIWEALDKCQLGDEVRKKE KLDS V
Sbjct: 1312 DLRSRLSIIPQDPTMFEGTVRSNLDPLEEYTDEQIWEALDKCQLGDEVRKKERKLDSTVI 1371
Query: 1380 ENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITI 1439
ENGENWSMGQRQLVCLGRVLLK+ K+L+LDEATASVDT+TDNLIQQ+LRQHFSDCTVITI
Sbjct: 1372 ENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTSTDNLIQQTLRQHFSDCTVITI 1431
Query: 1440 AHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSFSQLVAEYTQRSSS 1490
AHRITSV+DSDMVLLLS+GLIEEYDSP +LLENKSSSF+QLVAEY RS +
Sbjct: 1432 AHRITSVLDSDMVLLLSNGLIEEYDSPARLLENKSSSFAQLVAEYRVRSDT 1482
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359494293|ref|XP_003634755.1| PREDICTED: ABC transporter C family member 3-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2172 bits (5628), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1066/1491 (71%), Positives = 1252/1491 (83%), Gaps = 12/1491 (0%)
Query: 2 YSGTDFLLKQAFLRGASGSLHLFLLLGLFGLWVWKKLKVGEGDHSGGSKERFKNKKALWY 61
Y GT FLL FLR S SLHL LLL LF WV K++K GG+ E K + L+Y
Sbjct: 4 YPGTGFLLNPVFLRVFSASLHLVLLLLLFVSWVCKRIK-------GGAPENCKRTRFLYY 56
Query: 62 KLTLVCCFVVSLSSLVLCLLSYFYWYGNGRSYDQLVILFDFGVRTLGWGAICVYLRTVFL 121
K T CC +SL +L+LC L+YFYWY NG S ++LV L D +RTL WGA+CVYL T F+
Sbjct: 57 KQTFACCQGLSLLNLLLCFLNYFYWYRNGWSDERLVTLLDLVLRTLAWGAVCVYLHTQFI 116
Query: 122 NLRQPKLPMLLKIWWGFYVFISCYCLIVDIVLYQKQVNLPIQYLVSDVVSVITGLFPCFV 181
+PK P LL++WWGFY ISCY L++DIV +K +L IQYLV D+V VITGLF C+
Sbjct: 117 GSVEPKFPFLLRVWWGFYFSISCYFLVLDIV--KKHQSLRIQYLVPDIVYVITGLFLCYS 174
Query: 182 GFMSKIEGEDTLILQEPLLKVDSGESEGTVASIKSRGADTVTPYSNAGLFSVLTYTWINS 241
GF+ K +GE++ IL+EPLL + S V S KS+G TVTP+S AG FS+LT++WI
Sbjct: 175 GFLGKNQGEES-ILREPLL--NGSTSISRVESNKSKGEATVTPFSKAGFFSLLTFSWIGP 231
Query: 242 LIALGNKKTLDLEDVPQLDSGNSVVGVFATFKNKLETEAGLGSGLTTLKLIKAMFRSVWK 301
LIA GNKKTLDLEDVPQLD+ NSV GVF F NKL+ ++G SG+TTLKL+KA+ + W
Sbjct: 232 LIAEGNKKTLDLEDVPQLDTSNSVAGVFPAFSNKLQCDSGGSSGVTTLKLVKALIFACWA 291
Query: 302 DVLLTALVAIVCTLATYVGPYLIDTLVQYLSGKRDFENEGYALVSAFCVAKLVECLCQRF 361
++LLTA + +V TLA+YVGPYLIDT VQYL+G+R+F+NEGY L AF VAKLVE L R
Sbjct: 292 EILLTAFLVLVKTLASYVGPYLIDTFVQYLNGRREFKNEGYLLAMAFFVAKLVERLSVRH 351
Query: 362 FVFRLEQLGIRLRAALIAMIYNKGLKLSSQAKQGNTSGEIINFMTVDAERVAELSWYIHD 421
+ FRL+Q+GIR+RA LI MIYNKGL LS Q+KQG+++GEIINFM+VDAER+ + SWY+HD
Sbjct: 352 WFFRLQQVGIRIRAVLITMIYNKGLTLSCQSKQGHSTGEIINFMSVDAERIGDFSWYMHD 411
Query: 422 PWLFLFEVALSFLILYKSLGIASVAAFFGTVIFMLVNVPLSTVQEKFQNELMKSKDERMK 481
PW+ + +V L+ LILYK+LG+ASVAAFF TVI ML NVPL QEKFQ++LM+SKD+RMK
Sbjct: 412 PWMVIVQVTLALLILYKNLGLASVAAFFATVIVMLTNVPLGKWQEKFQDKLMESKDKRMK 471
Query: 482 ATSEILRNMRILKLQGWELKFLSKTIDLRKSESGWLKRCLYTSSITSFVFWCAPTFVSVI 541
ATSEILRNMRILKLQGWE+KFLSK +DLRK+E+GWLK+ LYTS++T+FVFW APTFVSV
Sbjct: 472 ATSEILRNMRILKLQGWEMKFLSKIVDLRKNETGWLKKYLYTSAVTTFVFWGAPTFVSVA 531
Query: 542 TFGTCILLKVPLESGKVLSAIATFRLLQILIYKLPAIISMTIQTKVSLQRIASFFCLDEL 601
TFGTC+LL +PLESGK+LS++ATFR+LQ IY LP +ISM QTKVSL RIASF LD+L
Sbjct: 532 TFGTCMLLGIPLESGKILSSLATFRILQEPIYSLPDLISMIAQTKVSLDRIASFLRLDDL 591
Query: 602 QPDLVEKQPRGSSETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSS 661
D++E+ P+GSS+TAIEI DGNFSWD+SS NPTLKDINL+V GMRVAVCGTVGSGKSS
Sbjct: 592 PSDVIERLPKGSSDTAIEIVDGNFSWDLSSPNPTLKDINLRVCRGMRVAVCGTVGSGKSS 651
Query: 662 LLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMDRERYNAVLDACSL 721
LLSC+LGEVPKISG LKLCGTKAYVAQSPWIQSGKIE+NILFGKEM+RERY VLDACSL
Sbjct: 652 LLSCMLGEVPKISGILKLCGTKAYVAQSPWIQSGKIEENILFGKEMERERYERVLDACSL 711
Query: 722 EKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHL 781
+KDLE+LSFGDQTV+GE GIN+SGGQKQRIQIARALYQ+ADIYLFDDPFSAVDAHTG+HL
Sbjct: 712 KKDLEVLSFGDQTVIGEWGINMSGGQKQRIQIARALYQNADIYLFDDPFSAVDAHTGTHL 771
Query: 782 FKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVINSGTDFMELVDA 841
FKE LLGL SKTV+YVTHQVEFLPAADL+LV+KDG++TQAGKY +++NSGTDFMELV A
Sbjct: 772 FKECLLGLSGSKTVIYVTHQVEFLPAADLILVMKDGRVTQAGKYNEILNSGTDFMELVGA 831
Query: 842 HKQALSTLDSIEGRPLSEKGSANGENDGTSATDGVVKEVENKEVQNDREDKVAEPQRQLV 901
HK+AL L+S+E LSEK S ++D T VV++ EN+ QN + +++ P+ QLV
Sbjct: 832 HKKALLALNSVEAGSLSEKLSILEDSDNIGGTSEVVEKEENRGGQNGKAEEIDGPKGQLV 891
Query: 902 QEEEREKGKVEFSVYWKYITAAYGGVLVPFILLAQTLFQILQIASNYWIAWATPASKDIK 961
QEEEREKGKV VYWKYI AYGG LVPFILL+Q LFQ+LQI SNYW+AWA+P S D+K
Sbjct: 892 QEEEREKGKVGLWVYWKYIRTAYGGALVPFILLSQILFQLLQIGSNYWMAWASPVSDDVK 951
Query: 962 PRVTGSMLLIVFVALAFGSSFCILARSTLLATAGYKTATLLFNKMHYCIFRAPMSFFDAT 1021
P V GS L+IV+VALA GSSFC+L+R+ LL TAGYKTAT+LFNKMH C+FRAPMSFFDAT
Sbjct: 952 PAVRGSTLIIVYVALAVGSSFCVLSRAMLLVTAGYKTATILFNKMHLCVFRAPMSFFDAT 1011
Query: 1022 PSGRIINRASTDQSAVDLSIPALIGSFAFSIIRVLGVIGVMSLVAWQVFIVFIPVIATCI 1081
PSGRI+NRAS DQS +D ++P +G+FAF +I++LG+I VMS VAWQVFIVFIPVIATCI
Sbjct: 1012 PSGRILNRASADQSTIDTTMPMQVGAFAFQLIQLLGIIAVMSQVAWQVFIVFIPVIATCI 1071
Query: 1082 WYQQYYISSARELSRLVGVCKAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGYSR 1141
WYQQYYI SARELSRL GVCKAP+IQHF+ET++GS TIRSFDQESRF DTNM+L+DGY R
Sbjct: 1072 WYQQYYIPSARELSRLAGVCKAPVIQHFSETIAGSMTIRSFDQESRFRDTNMKLVDGYLR 1131
Query: 1142 PTFHVAAAMEWLGFRLDMLSNITFAFSLVFLISIPKGFIDPAIAGLAVTYGLTLNNLQAM 1201
P F++A AMEWL FRLDMLS++TFAFSLVFLIS+P+G IDP IAGLA+TYGL LN +QA
Sbjct: 1132 PKFNIAGAMEWLCFRLDMLSSVTFAFSLVFLISVPEGVIDPGIAGLAMTYGLNLNMIQAR 1191
Query: 1202 LIWLACQMENKIISVERIFQYTCIPSEPPLEIEESRPNHSWPSHGKIDLRDLQVRYAPHM 1261
+IW C MENKIISVERI QYT IPSEPPL EE+R SWPSHG++D++DLQVRYAPHM
Sbjct: 1192 VIWNLCNMENKIISVERILQYTSIPSEPPLVTEENRLACSWPSHGEVDIQDLQVRYAPHM 1251
Query: 1262 PFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDL 1321
P VLRG++CTF G KTGIVGRTGSGKSTLIQTLFRIVEPAAGQI+IDG +IS IGL+DL
Sbjct: 1252 PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIMIDGTNISSIGLNDL 1311
Query: 1322 RTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTEN 1381
RTRLSIIPQDP MFEGTVRSN+DPLEE++DEQIWEALDKCQLGDEVRKKEGKLDS V EN
Sbjct: 1312 RTRLSIIPQDPTMFEGTVRSNLDPLEEHSDEQIWEALDKCQLGDEVRKKEGKLDSAVIEN 1371
Query: 1382 GENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAH 1441
GENWSMGQRQLVCLGRVLLK+ K+L+LDEATASVDTATDNLIQQ+LRQHF D TVITIAH
Sbjct: 1372 GENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFVDSTVITIAH 1431
Query: 1442 RITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSFSQLVAEYTQRSSSSL 1492
RITSV+DSD VLLL HGLIEEYD+P +LLENKSSSF++LVAEYT RS S+L
Sbjct: 1432 RITSVLDSDKVLLLDHGLIEEYDTPTRLLENKSSSFAKLVAEYTVRSHSNL 1482
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359494289|ref|XP_003634753.1| PREDICTED: ABC transporter C family member 3-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2158 bits (5591), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1053/1491 (70%), Positives = 1244/1491 (83%), Gaps = 12/1491 (0%)
Query: 2 YSGTDFLLKQAFLRGASGSLHLFLLLGLFGLWVWKKLKVGEGDHSGGSKERFKNKKALWY 61
Y G FLL FLR S SLHL LLL LF WV K++ +GG+ E +K + L+Y
Sbjct: 4 YPGIGFLLNPVFLRAFSASLHLVLLLLLFVSWVCKRI-------NGGALENYKRTRFLYY 56
Query: 62 KLTLVCCFVVSLSSLVLCLLSYFYWYGNGRSYDQLVILFDFGVRTLGWGAICVYLRTVFL 121
K T CC +SL + LC L+YFYWY NG S ++LV L D +RTL WGA+ VYL T F
Sbjct: 57 KQTFACCQGLSLLNFFLCFLNYFYWYRNGWSGEKLVTLLDLVLRTLSWGAVSVYLHTQFH 116
Query: 122 NLRQPKLPMLLKIWWGFYVFISCYCLIVDIVLYQKQVNLPIQYLVSDVVSVITGLFPCFV 181
+PK P LL++WWGFY ISCYCL++DIV +K +L +Q+LV D+V VITGLF C+
Sbjct: 117 GSVEPKFPFLLRVWWGFYFSISCYCLVIDIV--KKDQSLQVQFLVPDIVYVITGLFLCYS 174
Query: 182 GFMSKIEGEDTLILQEPLLKVDSGESEGTVASIKSRGADTVTPYSNAGLFSVLTYTWINS 241
GF+ +GE++ IL+EPLL + G S V S +S+G +TVTP+S AG FS+LT++WI
Sbjct: 175 GFLGNNQGEES-ILREPLL--NGGTSISIVESDESKGEETVTPFSKAGFFSLLTFSWIGP 231
Query: 242 LIALGNKKTLDLEDVPQLDSGNSVVGVFATFKNKLETEAGLGSGLTTLKLIKAMFRSVWK 301
LIA GNKKTLDL DVPQLD+ NSVV VF F+NKL+ + G +G+TTLKL+KA+ + W
Sbjct: 232 LIAEGNKKTLDLGDVPQLDTSNSVVAVFPAFRNKLQCDCGGSNGVTTLKLVKALIFAFWA 291
Query: 302 DVLLTALVAIVCTLATYVGPYLIDTLVQYLSGKRDFENEGYALVSAFCVAKLVECLCQRF 361
++LLTAL ++ LA+YVGPYLIDT VQYL+G+R+F+NEGY LV F +AKLVECL R
Sbjct: 292 EILLTALFLLLDILASYVGPYLIDTFVQYLNGRREFKNEGYVLVMVFFLAKLVECLSLRQ 351
Query: 362 FVFRLEQLGIRLRAALIAMIYNKGLKLSSQAKQGNTSGEIINFMTVDAERVAELSWYIHD 421
FRL+Q+G R+RA +I MIYNKGL LS Q+KQG+T+GEIINFM+VDAER+ + WY+H
Sbjct: 352 CSFRLQQVGFRIRAVMITMIYNKGLTLSCQSKQGHTTGEIINFMSVDAERIGDFIWYMHG 411
Query: 422 PWLFLFEVALSFLILYKSLGIASVAAFFGTVIFMLVNVPLSTVQEKFQNELMKSKDERMK 481
PW+ + +V L+ LILYK++G+ASVAAFF T+I ML NVPL +EKFQ +LM+SKD+RMK
Sbjct: 412 PWMVIVQVTLALLILYKNVGLASVAAFFATIIVMLANVPLGKWEEKFQGKLMESKDKRMK 471
Query: 482 ATSEILRNMRILKLQGWELKFLSKTIDLRKSESGWLKRCLYTSSITSFVFWCAPTFVSVI 541
ATSEILRNMRILKLQGWE+KFLSK +DLRK+E+GWLK+ LYTS++T+F FW APTFVSV+
Sbjct: 472 ATSEILRNMRILKLQGWEMKFLSKIVDLRKNETGWLKKYLYTSAMTTFFFWVAPTFVSVV 531
Query: 542 TFGTCILLKVPLESGKVLSAIATFRLLQILIYKLPAIISMTIQTKVSLQRIASFFCLDEL 601
TFGTC+L+ +PLESGK+LS++ATFR+LQ IY LP +ISM +QTKVSL RI SF L +L
Sbjct: 532 TFGTCMLIGIPLESGKILSSLATFRILQQPIYLLPDLISMIVQTKVSLDRITSFLRLVDL 591
Query: 602 QPDLVEKQPRGSSETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSS 661
Q D++E+ P+GSS+TAIEI DGNFSWD+SS NPTLKDINL+V GMRVAVCGTVGSGKSS
Sbjct: 592 QSDVIERLPKGSSDTAIEIVDGNFSWDLSSPNPTLKDINLRVCRGMRVAVCGTVGSGKSS 651
Query: 662 LLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMDRERYNAVLDACSL 721
LLSC+LGEVPKISG LKLCGTKAYVAQSPWIQSGKIE+NILFGKEMDRERY VLDACSL
Sbjct: 652 LLSCMLGEVPKISGILKLCGTKAYVAQSPWIQSGKIEENILFGKEMDRERYERVLDACSL 711
Query: 722 EKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHL 781
+KDLE+LSFGDQTV+GERGINLSGGQKQRIQIARALYQ+ADIYLFDDPFSAVDAHTG+HL
Sbjct: 712 KKDLEVLSFGDQTVIGERGINLSGGQKQRIQIARALYQNADIYLFDDPFSAVDAHTGTHL 771
Query: 782 FKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVINSGTDFMELVDA 841
FKE LLGLL SKTV+YVTHQVEFLPAADL+LV+KDG+ITQAGKY +++NSGTDFMELV A
Sbjct: 772 FKECLLGLLGSKTVIYVTHQVEFLPAADLILVMKDGRITQAGKYNEILNSGTDFMELVGA 831
Query: 842 HKQALSTLDSIEGRPLSEKGSANGENDGTSATDGVVKEVENKEVQNDREDKVAEPQRQLV 901
HK+ALS L+S+E LSEK S + ++D T VV++ EN QN + +++ P+ QLV
Sbjct: 832 HKKALSALNSVETGSLSEKLSIHEDSDNIGGTSEVVEKEENSGGQNGKAEEIDGPKGQLV 891
Query: 902 QEEEREKGKVEFSVYWKYITAAYGGVLVPFILLAQTLFQILQIASNYWIAWATPASKDIK 961
QEEEREKGKV VYW Y+ AYGG LVPFILL+Q LFQ+LQI SNYW+AWA+P S D+K
Sbjct: 892 QEEEREKGKVGLWVYWNYMRTAYGGALVPFILLSQILFQLLQIGSNYWMAWASPVSDDVK 951
Query: 962 PRVTGSMLLIVFVALAFGSSFCILARSTLLATAGYKTATLLFNKMHYCIFRAPMSFFDAT 1021
P V GS L+IV+VALA GSSFC+L+R+ LL TAGYKTAT+LFNKMH C+FRAPMSFFDAT
Sbjct: 952 PAVRGSTLIIVYVALAVGSSFCVLSRAMLLVTAGYKTATILFNKMHLCVFRAPMSFFDAT 1011
Query: 1022 PSGRIINRASTDQSAVDLSIPALIGSFAFSIIRVLGVIGVMSLVAWQVFIVFIPVIATCI 1081
PSGRI+NRASTDQS +D +I +G+ AF +I++LG+I VMS VAWQVFIVFIPV ATCI
Sbjct: 1012 PSGRILNRASTDQSTIDTNIATQVGACAFQLIQLLGIIAVMSQVAWQVFIVFIPVAATCI 1071
Query: 1082 WYQQYYISSARELSRLVGVCKAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGYSR 1141
WYQQYYI SARELSRL GVCKAP+IQHF+ET+SGS TIRSFDQESRF DTNM+L+DGY R
Sbjct: 1072 WYQQYYIPSARELSRLAGVCKAPIIQHFSETISGSMTIRSFDQESRFRDTNMKLIDGYIR 1131
Query: 1142 PTFHVAAAMEWLGFRLDMLSNITFAFSLVFLISIPKGFIDPAIAGLAVTYGLTLNNLQAM 1201
P F +A A+EWL FRLDMLS++TFAFSLVFLIS+P+G IDP +AGL VTYGL LN + A
Sbjct: 1132 PKFSIAGAIEWLCFRLDMLSSVTFAFSLVFLISVPEGVIDPGLAGLTVTYGLNLNMILAW 1191
Query: 1202 LIWLACQMENKIISVERIFQYTCIPSEPPLEIEESRPNHSWPSHGKIDLRDLQVRYAPHM 1261
+IW C MEN IISVERI QYT IPSEPPL IEE+RP SWPSHG++D++DLQVRYAPHM
Sbjct: 1192 VIWNFCNMENIIISVERILQYTSIPSEPPLVIEENRPACSWPSHGQVDIQDLQVRYAPHM 1251
Query: 1262 PFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDL 1321
P VLRG++CTF G KTGIVGRTGSGKSTLIQTLFRIVEPAAGQI IDG +IS IGLHDL
Sbjct: 1252 PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPAAGQITIDGTNISSIGLHDL 1311
Query: 1322 RTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTEN 1381
R+RLSIIPQDP MFEGTVRSN+DPLEEY+DEQIWEALDKCQLGDEVRKKEGKLDS VTEN
Sbjct: 1312 RSRLSIIPQDPTMFEGTVRSNLDPLEEYSDEQIWEALDKCQLGDEVRKKEGKLDSAVTEN 1371
Query: 1382 GENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAH 1441
GENWSMGQRQLVCLGRVLLK+ K+L+LDEATASVDTATDNLIQQ+LRQHF D TVITIAH
Sbjct: 1372 GENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFVDSTVITIAH 1431
Query: 1442 RITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSFSQLVAEYTQRSSSSL 1492
RITSV+DSDMVLLL HGL+EEYD+P +LLENKSSSF++LVAEYT RS+SSL
Sbjct: 1432 RITSVLDSDMVLLLDHGLVEEYDTPTRLLENKSSSFAKLVAEYTVRSNSSL 1482
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359494168|ref|XP_002265605.2| PREDICTED: ABC transporter C family member 3-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2157 bits (5588), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1057/1491 (70%), Positives = 1242/1491 (83%), Gaps = 16/1491 (1%)
Query: 2 YSGTDFLLKQAFLRGASGSLHLFLLLGLFGLWVWKKLKVGEGDHSGGSKERFKNKKALWY 61
YSG FLL LR S S HL LLL LF W KK+K+G + E K +Y
Sbjct: 10 YSGIGFLLNPTSLRAFSASFHLVLLLFLFVSWACKKIKMG-------ALENCKRTGFSYY 62
Query: 62 KLTLVCCFVVSLSSLVLCLLSYFYWYGNGRSYDQLVILFDFGVRTLGWGAICVYLRTVFL 121
K VCC +S+ +L L L+YFYWY NG S +QLV L D +RT W +CVYL T FL
Sbjct: 63 KQIFVCCLGLSVFNLALFFLNYFYWYKNGWSDEQLVTLSDLALRTFAWATVCVYLHTQFL 122
Query: 122 NLRQPKLPMLLKIWWGFYVFISCYCLIVDIVLYQKQVNLPIQYLVSDVVSVITGLFPCFV 181
+PK P L++WWGFY ISCYCL++DIV ++ + PIQ+LV D V VITGLF C++
Sbjct: 123 GSVEPKFPFSLRVWWGFYFSISCYCLVIDIV--KQHQSQPIQFLVPDAVYVITGLFLCYL 180
Query: 182 GFMSKIEGEDTLILQEPLLKVDSGESEGTVASIKSRGADTVTPYSNAGLFSVLTYTWINS 241
G K +GE++ IL+E LL S VAS KS+G +TVTP+SNAG+FS+LT++W+
Sbjct: 181 GLWGKNQGEES-ILRESLLH-GSASISTRVASNKSKGEETVTPFSNAGVFSLLTFSWMGP 238
Query: 242 LIALGNKKTLDLEDVPQLDSGNSVVGVFATFKNKLETEAGLGSGLTTLKLIKAMFRSVWK 301
LIALGNKKTLDLEDVPQLD+ NSVVG F F++KLE + G GSG+TTLKL+KAM S W
Sbjct: 239 LIALGNKKTLDLEDVPQLDAVNSVVGGFPIFRSKLEGDGGGGSGVTTLKLVKAMILSAWA 298
Query: 302 DVLLTALVAIVCTLATYVGPYLIDTLVQYLSGKRDFENEGYALVSAFCVAKLVECLCQRF 361
++LL+AL A++ TLA+YVGPYLIDT VQYL+G+R F+NEGY LVSAF VAKLVECL R
Sbjct: 299 EILLSALFALLYTLASYVGPYLIDTFVQYLNGQRQFKNEGYFLVSAFLVAKLVECLSMRH 358
Query: 362 FVFRLEQLGIRLRAALIAMIYNKGLKLSSQAKQGNTSGEIINFMTVDAERVAELSWYIHD 421
+ FRL+Q+GIR+RA L+ IYNK L +S +KQ +TSGEIINF++VDAER+ + WY+HD
Sbjct: 359 WFFRLQQVGIRMRAVLVTKIYNKVLAVSYHSKQCHTSGEIINFISVDAERIGDFGWYMHD 418
Query: 422 PWLFLFEVALSFLILYKSLGIASVAAFFGTVIFMLVNVPLSTVQEKFQNELMKSKDERMK 481
PW+ +VAL+ LILYK+LG+AS+AAFF TVI ML NVPL+ QEKFQ++LM+SKD+RMK
Sbjct: 419 PWMVTLQVALALLILYKNLGLASIAAFFATVIIMLANVPLAKFQEKFQDKLMESKDKRMK 478
Query: 482 ATSEILRNMRILKLQGWELKFLSKTIDLRKSESGWLKRCLYTSSITSFVFWCAPTFVSVI 541
+TSEILRNMRILKLQGWE+KFLSK +DLRK+E+GWLK+ +YT +IT+FVFW P FVSV+
Sbjct: 479 STSEILRNMRILKLQGWEMKFLSKIVDLRKNETGWLKKYVYTLAITTFVFWVGPIFVSVV 538
Query: 542 TFGTCILLKVPLESGKVLSAIATFRLLQILIYKLPAIISMTIQTKVSLQRIASFFCLDEL 601
+FGT +L+ +PLESGK+LS++ATFR+LQ IY LP ISM QTKVSL RIASF LD+L
Sbjct: 539 SFGTAMLMGIPLESGKILSSLATFRILQEPIYNLPDTISMIAQTKVSLDRIASFLRLDDL 598
Query: 602 QPDLVEKQPRGSSETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSS 661
QPD+VEK P+G+S TAIEI +GNFSWD+SS +PTLKDINL+V HGMRVAVCG VGSGKSS
Sbjct: 599 QPDVVEKLPKGTSSTAIEIVNGNFSWDLSSPHPTLKDINLQVHHGMRVAVCGAVGSGKSS 658
Query: 662 LLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMDRERYNAVLDACSL 721
LLSCILGEVPKISGTLKL GTKAYVAQSPWIQ GKIE+NILFGKEMDRERY VLDAC+L
Sbjct: 659 LLSCILGEVPKISGTLKLSGTKAYVAQSPWIQGGKIEENILFGKEMDRERYERVLDACTL 718
Query: 722 EKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHL 781
+KDLEIL FGDQTV+GERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTG+HL
Sbjct: 719 KKDLEILPFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGTHL 778
Query: 782 FKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVINSGTDFMELVDA 841
FKE LLGLL+SKTV+YVTHQVEFLPAADL+LV+K+G+ITQAGKY D++N G+DF+ELV A
Sbjct: 779 FKECLLGLLDSKTVVYVTHQVEFLPAADLILVMKEGRITQAGKYNDILNYGSDFVELVGA 838
Query: 842 HKQALSTLDSIEGRPLSEKGSANGEND-GTSATDGVVKEVENKEVQNDREDKVAEPQRQL 900
HK+ALS L+SIE +EK S EN T +T VV + EN+ Q + P+ QL
Sbjct: 839 HKKALSALESIE----AEKSSIMSENSVDTGSTSEVVPKEENRNGQTGNIEGTDGPKAQL 894
Query: 901 VQEEEREKGKVEFSVYWKYITAAYGGVLVPFILLAQTLFQILQIASNYWIAWATPASKDI 960
VQEEEREKGKV FSVYWKYIT AYGG LVPFILL+Q LFQ+LQI SNYW+AWATP S+D+
Sbjct: 895 VQEEEREKGKVGFSVYWKYITTAYGGALVPFILLSQILFQLLQIGSNYWMAWATPVSEDV 954
Query: 961 KPRVTGSMLLIVFVALAFGSSFCILARSTLLATAGYKTATLLFNKMHYCIFRAPMSFFDA 1020
KP V GS L++V+VALA GSS C+L+R+ L+ TAGY+TAT+LFNKMH IFRAPMSFFDA
Sbjct: 955 KPAVGGSTLILVYVALAIGSSLCVLSRAMLVVTAGYRTATILFNKMHLSIFRAPMSFFDA 1014
Query: 1021 TPSGRIINRASTDQSAVDLSIPALIGSFAFSIIRVLGVIGVMSLVAWQVFIVFIPVIATC 1080
TPSGRI+NRASTDQSAVD+ IP +I AFS I++LG+I VMS V WQVFIVF+P+IATC
Sbjct: 1015 TPSGRILNRASTDQSAVDMDIPMVIWKCAFSFIQLLGIIAVMSQVVWQVFIVFVPMIATC 1074
Query: 1081 IWYQQYYISSARELSRLVGVCKAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGYS 1140
IWYQ+YYISSAREL+RLVGVCKAP+IQHF+ET+SGSTTIRSFDQESRF DTNM+L+DGY+
Sbjct: 1075 IWYQRYYISSARELARLVGVCKAPVIQHFSETISGSTTIRSFDQESRFRDTNMKLIDGYT 1134
Query: 1141 RPTFHVAAAMEWLGFRLDMLSNITFAFSLVFLISIPKGFIDPAIAGLAVTYGLTLNNLQA 1200
RP F+ AAAMEWL FRLD+LS+ITFAFSLVFLISIP+G IDP IAGLAVTYGL LN LQA
Sbjct: 1135 RPKFNSAAAMEWLCFRLDVLSSITFAFSLVFLISIPEGAIDPGIAGLAVTYGLNLNTLQA 1194
Query: 1201 MLIWLACQMENKIISVERIFQYTCIPSEPPLEIEESRPNHSWPSHGKIDLRDLQVRYAPH 1260
++W C MENKIISVER+ QYT IPSEPPL +E ++P SWPSHG++D+RDLQVRYAPH
Sbjct: 1195 WVVWNLCNMENKIISVERMLQYTSIPSEPPLVMEGNKPACSWPSHGEVDIRDLQVRYAPH 1254
Query: 1261 MPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHD 1320
+P VLRG++C FPG KTGIVGRTGSGKSTLIQTLFRIVEP AG+I+IDG +ISLIGLHD
Sbjct: 1255 LPLVLRGLTCNFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIMIDGTNISLIGLHD 1314
Query: 1321 LRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTE 1380
LR+RLSIIPQDP MFEGTVRSN+DPLEEY+DEQIWEALDKCQLGDEVRKKEGKLDS V E
Sbjct: 1315 LRSRLSIIPQDPTMFEGTVRSNLDPLEEYSDEQIWEALDKCQLGDEVRKKEGKLDSAVNE 1374
Query: 1381 NGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIA 1440
NGENWSMGQRQLVCLGRVLLK+ K+L+LDEATASVDTATDNLIQQ+LRQHF D TVITIA
Sbjct: 1375 NGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFVDSTVITIA 1434
Query: 1441 HRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSFSQLVAEYTQRSSSS 1491
HRITSV+DSDMVLLL HGLIEE+D+P +LLENKSSSF++LVAEYT RS S+
Sbjct: 1435 HRITSVLDSDMVLLLDHGLIEEHDTPARLLENKSSSFAKLVAEYTVRSKSN 1485
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356499431|ref|XP_003518544.1| PREDICTED: ABC transporter C family member 3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2136 bits (5535), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1038/1489 (69%), Positives = 1235/1489 (82%), Gaps = 13/1489 (0%)
Query: 5 TDFLLKQAFLRGASGSLHLFLLLGLFGLWVWKKLKVGEGDHSGGSKERFKNKKALWYKLT 64
T LLK FL G SG LHL LL+ + WVW+K G GD S K++ N +K T
Sbjct: 572 TAVLLKPIFLHGLSGFLHLLLLVAVVLSWVWRKFTAGPGDES---KKKPNNS---LFKTT 625
Query: 65 LVCCFVVSLSSLVLCLLSYFYWYGNGRSYDQLVILFDFGVRTLGWGAICVYLRTVFLNLR 124
+ +S + +LC ++YFYWY +G S ++LV L D ++TL WG +CV L+ F +
Sbjct: 626 VFSSLALSAFNFLLCFINYFYWYTSGWSEEKLVTLLDLALKTLAWGVVCVCLQKGFFSSG 685
Query: 125 QPKLPMLLKIWWGFYVFISCYCLIVDIVLYQ-KQVNLPIQYLVSDVVSVITGLFPCFVGF 183
Q + + W+ FY+F+SCYC++VDIV+ ++V+LP QYLVSDVVS GLF C+VG+
Sbjct: 686 QRRFSFFFRAWFTFYLFVSCYCIVVDIVVMSGRRVSLPTQYLVSDVVSTCVGLFFCYVGY 745
Query: 184 MSKIEGEDTLILQEPLLKVDSGESEGTVASIKSRGADTVTPYSNAGLFSVLTYTWINSLI 243
K E + EPLL DS ES+ T +G D+VTP+S AG+ S+LT++W+ LI
Sbjct: 746 FVKNEVHVDNGIHEPLLNADSLESKET------KGGDSVTPFSYAGILSILTFSWVGPLI 799
Query: 244 ALGNKKTLDLEDVPQLDSGNSVVGVFATFKNKLETEAGLGSGLTTLKLIKAMFRSVWKDV 303
A+GNKKTLDLEDVPQLDS +SV+G F TF+ K+E + G + +TTLKL+K++ S WK++
Sbjct: 800 AVGNKKTLDLEDVPQLDSRDSVIGAFPTFREKVEADCGGINSVTTLKLVKSLIISAWKEI 859
Query: 304 LLTALVAIVCTLATYVGPYLIDTLVQYLSGKRDFENEGYALVSAFCVAKLVECLCQRFFV 363
L+TA + ++ TLA+YVGPYLID VQYL G+R +EN+GY LVSAF AKLVECL QR +
Sbjct: 860 LITAFLVLLNTLASYVGPYLIDGFVQYLDGQRLYENQGYFLVSAFFFAKLVECLTQRHWF 919
Query: 364 FRLEQLGIRLRAALIAMIYNKGLKLSSQAKQGNTSGEIINFMTVDAERVAELSWYIHDPW 423
FRL+Q+G+R+RA L+ MIYNK L LS Q+KQG+TSGEIINFMTVDAERV SWY+HD W
Sbjct: 920 FRLQQVGLRIRALLVTMIYNKALTLSCQSKQGHTSGEIINFMTVDAERVGVFSWYMHDLW 979
Query: 424 LFLFEVALSFLILYKSLGIASVAAFFGTVIFMLVNVPLSTVQEKFQNELMKSKDERMKAT 483
+ +V L+ LILYK+LG+AS+AAF TV ML NVPL ++QEKFQ +LM+SKD RMKAT
Sbjct: 980 MVALQVTLALLILYKNLGLASIAAFVATVAIMLANVPLGSLQEKFQKKLMESKDTRMKAT 1039
Query: 484 SEILRNMRILKLQGWELKFLSKTIDLRKSESGWLKRCLYTSSITSFVFWCAPTFVSVITF 543
SEILRNMRILKLQGWE+KFLSK +LRK+E GWLK+ +YT+++T+FVFW +PTFVSV+TF
Sbjct: 1040 SEILRNMRILKLQGWEMKFLSKITELRKNEQGWLKKYVYTAAVTTFVFWGSPTFVSVVTF 1099
Query: 544 GTCILLKVPLESGKVLSAIATFRLLQILIYKLPAIISMTIQTKVSLQRIASFFCLDELQP 603
GTC+L+ +PLESGK+LSA+ATFR+LQ IY LP ISM QTKVSL RI SF LD+L+
Sbjct: 1100 GTCMLMGIPLESGKILSALATFRILQEPIYGLPDTISMIAQTKVSLDRIVSFLRLDDLRS 1159
Query: 604 DLVEKQPRGSSETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLL 663
D+VEK P GSS+TAIE+ DGNFSWD+SS +PTL++INLKVFHGMRVAVCGTVGSGKS+LL
Sbjct: 1160 DVVEKLPWGSSDTAIEVVDGNFSWDLSSPSPTLQNINLKVFHGMRVAVCGTVGSGKSTLL 1219
Query: 664 SCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMDRERYNAVLDACSLEK 723
SC+LGEVPKISG LK+CGTKAYVAQSPWIQSGKIEDNILFG+ MDR+RY VL+ACSL+K
Sbjct: 1220 SCVLGEVPKISGILKVCGTKAYVAQSPWIQSGKIEDNILFGERMDRDRYEKVLEACSLKK 1279
Query: 724 DLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFK 783
DLEILSFGDQT++GERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFK
Sbjct: 1280 DLEILSFGDQTIIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFK 1339
Query: 784 EVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVINSGTDFMELVDAHK 843
E LLGLL SKTV+YVTHQVEFLPAADL+LV+KDGKITQ GKYTD++NSG DFMELV AHK
Sbjct: 1340 ECLLGLLCSKTVVYVTHQVEFLPAADLILVMKDGKITQCGKYTDLLNSGADFMELVGAHK 1399
Query: 844 QALSTLDSIEGRPLSEKGSANGENDGTSATDGVVKEVENKEVQNDREDKVAEPQRQLVQE 903
+ALSTLDS++G +S + S ++ S T G ++ +K+ QN + D +E Q QLVQE
Sbjct: 1400 KALSTLDSLDGAAVSNEISVLEQDVNVSDTHGFKEKEASKDEQNGQTDNKSELQGQLVQE 1459
Query: 904 EEREKGKVEFSVYWKYITAAYGGVLVPFILLAQTLFQILQIASNYWIAWATPASKDIKPR 963
EEREKGKV FSVYWK IT AYGG LVPFILLAQ LFQ LQI SNYW+AWATP S+D++P
Sbjct: 1460 EEREKGKVGFSVYWKCITTAYGGALVPFILLAQILFQALQIGSNYWMAWATPISEDVQPP 1519
Query: 964 VTGSMLLIVFVALAFGSSFCILARSTLLATAGYKTATLLFNKMHYCIFRAPMSFFDATPS 1023
V G+ L+ V+V LA GSSFCILAR+ LL TAGYKTAT+LFNKMH+CIFRAPMSFFD+TPS
Sbjct: 1520 VEGTTLIAVYVGLAIGSSFCILARAILLVTAGYKTATILFNKMHFCIFRAPMSFFDSTPS 1579
Query: 1024 GRIINRASTDQSAVDLSIPALIGSFAFSIIRVLGVIGVMSLVAWQVFIVFIPVIATCIWY 1083
GRI+NRASTDQSA+D IP I SFAF +I++LG+IGVMS AWQVFIVFIPVIA I Y
Sbjct: 1580 GRILNRASTDQSALDTDIPYQIASFAFILIQLLGIIGVMSQAAWQVFIVFIPVIAISILY 1639
Query: 1084 QQYYISSARELSRLVGVCKAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGYSRPT 1143
QQYYI SARELSRLVGVCKAP+IQHFAET+SG++TIRSFDQ+SRF +TNM+L DGYSRP
Sbjct: 1640 QQYYIPSARELSRLVGVCKAPIIQHFAETISGTSTIRSFDQQSRFQETNMKLTDGYSRPK 1699
Query: 1144 FHVAAAMEWLGFRLDMLSNITFAFSLVFLISIPKGFIDPAIAGLAVTYGLTLNNLQAMLI 1203
F++A AMEWL FRLDMLS+ITFAFSL+FLISIP+GFIDP +AGLAVTYGL LN +QA +I
Sbjct: 1700 FNIAGAMEWLCFRLDMLSSITFAFSLIFLISIPQGFIDPGLAGLAVTYGLNLNMVQAWMI 1759
Query: 1204 WLACQMENKIISVERIFQYTCIPSEPPLEIEESRPNHSWPSHGKIDLRDLQVRYAPHMPF 1263
W C MENKIISVERI QYTCIP EP L ++++RP+ SWPS+G++D++DL+VRYAPH+P
Sbjct: 1760 WNLCNMENKIISVERILQYTCIPCEPSLVVDDNRPDPSWPSYGEVDIQDLKVRYAPHLPL 1819
Query: 1264 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRT 1323
VLRG++C F G KTGIVGRTGSGKSTLIQTLFRIVEP AGQ++ID I+IS IGLHDLR+
Sbjct: 1820 VLRGLTCKFRGGLKTGIVGRTGSGKSTLIQTLFRIVEPTAGQVMIDNINISSIGLHDLRS 1879
Query: 1324 RLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGE 1383
RLSIIPQDP MFEGTVR+N+DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGE
Sbjct: 1880 RLSIIPQDPTMFEGTVRNNLDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGE 1939
Query: 1384 NWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRI 1443
NWSMGQRQLVCLGRVLLK+ K+L+LDEATASVDTATDNLIQQ+LRQHFSD TVITIAHRI
Sbjct: 1940 NWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDSTVITIAHRI 1999
Query: 1444 TSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSFSQLVAEYTQRSSSSL 1492
TSV+DSDMVLLLS GLIEEYD+P +LLENKSSSF+QLVAEYT RS+SS
Sbjct: 2000 TSVLDSDMVLLLSQGLIEEYDTPTRLLENKSSSFAQLVAEYTMRSNSSF 2048
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356553519|ref|XP_003545103.1| PREDICTED: ABC transporter C family member 3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2129 bits (5516), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1032/1489 (69%), Positives = 1231/1489 (82%), Gaps = 13/1489 (0%)
Query: 5 TDFLLKQAFLRGASGSLHLFLLLGLFGLWVWKKLKVGEGDHSGGSKERFKNKKALWYKLT 64
T LLK FL G S +HL LLL + WVW K+ G D S KE+ + +K T
Sbjct: 12 TAVLLKPIFLHGFSAFIHLLLLLAVSLSWVWNKITAGARDES---KEKPSHT---LFKTT 65
Query: 65 LVCCFVVSLSSLVLCLLSYFYWYGNGRSYDQLVILFDFGVRTLGWGAICVYLRTVFLNLR 124
+ VS + +LCL +YFYWY +G S ++LV L D ++TL WG +CV L+ F +
Sbjct: 66 VFSSLGVSAFNFLLCLFTYFYWYTSGWSEEKLVTLLDLALKTLAWGVVCVCLQNGFFSSG 125
Query: 125 QPKLPMLLKIWWGFYVFISCYCLIVDIVLY-QKQVNLPIQYLVSDVVSVITGLFPCFVGF 183
+ + + W FY+ +SCYC +VDIV+ +++V LP +YLVSDVVS GLF C+VG+
Sbjct: 126 ERRFSFFFRAWCTFYLVVSCYCFVVDIVVVSERRVALPTRYLVSDVVSTCVGLFFCYVGY 185
Query: 184 MSKIEGEDTLILQEPLLKVDSGESEGTVASIKSRGADTVTPYSNAGLFSVLTYTWINSLI 243
K E +QEPLL D+ ES+ +S+G DTVTP+S AG S+LT++W+ LI
Sbjct: 186 FVKNEVHVDNGIQEPLLNSDALESK------ESKGGDTVTPFSYAGFLSILTFSWVGPLI 239
Query: 244 ALGNKKTLDLEDVPQLDSGNSVVGVFATFKNKLETEAGLGSGLTTLKLIKAMFRSVWKDV 303
A+GNKKTLDLEDVPQLD +SV+G F +F+ KLE + G + +TTLKL K++ S WK++
Sbjct: 240 AVGNKKTLDLEDVPQLDGRDSVIGAFPSFREKLEADCGGINRVTTLKLAKSLIMSAWKEI 299
Query: 304 LLTALVAIVCTLATYVGPYLIDTLVQYLSGKRDFENEGYALVSAFCVAKLVECLCQRFFV 363
L+TA +A++ TLA+YVGPYLID VQYL G+R +EN+GY LVSAF AKLVECL QR ++
Sbjct: 300 LITAFLALLNTLASYVGPYLIDGFVQYLDGQRLYENQGYFLVSAFFFAKLVECLTQRHWI 359
Query: 364 FRLEQLGIRLRAALIAMIYNKGLKLSSQAKQGNTSGEIINFMTVDAERVAELSWYIHDPW 423
F+L+Q+G+R+RA L+ MIYNK L LS Q+KQG+TSGEIINFMTVDAERV SWY+HD W
Sbjct: 360 FKLQQVGLRIRALLVTMIYNKALTLSCQSKQGHTSGEIINFMTVDAERVGVFSWYMHDLW 419
Query: 424 LFLFEVALSFLILYKSLGIASVAAFFGTVIFMLVNVPLSTVQEKFQNELMKSKDERMKAT 483
+ +V L+ LILYK+LG+AS+AA TV+ ML NVPL ++QEKFQ +LM+SKD RMKAT
Sbjct: 420 MVALQVTLALLILYKNLGLASIAALVATVVIMLANVPLGSLQEKFQKKLMESKDTRMKAT 479
Query: 484 SEILRNMRILKLQGWELKFLSKTIDLRKSESGWLKRCLYTSSITSFVFWCAPTFVSVITF 543
SEILRNMRILKLQGWE+KFLSK +LRK+E GWLK+ +YT+++T+FVFW +PTFVSV+TF
Sbjct: 480 SEILRNMRILKLQGWEIKFLSKITELRKNEQGWLKKYVYTAAVTTFVFWGSPTFVSVVTF 539
Query: 544 GTCILLKVPLESGKVLSAIATFRLLQILIYKLPAIISMTIQTKVSLQRIASFFCLDELQP 603
GTC+L+ +PLESGK+LSA+ATFR+LQ IY+LP ISM QTKVSL RI SF LD+L+
Sbjct: 540 GTCMLIGIPLESGKILSALATFRILQEPIYRLPDTISMIAQTKVSLDRIVSFLRLDDLRS 599
Query: 604 DLVEKQPRGSSETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLL 663
D+VEK P GSS+TAIE+ DGNFSWD+SS NPTL++INLKVFHGMRVAVCGTVGSGKS+LL
Sbjct: 600 DVVEKLPWGSSDTAIEVVDGNFSWDLSSPNPTLQNINLKVFHGMRVAVCGTVGSGKSTLL 659
Query: 664 SCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMDRERYNAVLDACSLEK 723
SC+LGEVPKISG LK+CGTKAYVAQSPWIQSGKIEDNILFG+ MDRERY VL+ACSL+K
Sbjct: 660 SCVLGEVPKISGILKVCGTKAYVAQSPWIQSGKIEDNILFGERMDRERYEKVLEACSLKK 719
Query: 724 DLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFK 783
DLEILSFGDQT++GERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFK
Sbjct: 720 DLEILSFGDQTIIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFK 779
Query: 784 EVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVINSGTDFMELVDAHK 843
E LLGLL+SKTV+YVTHQVEFLPAADL+LV+KDGKITQ GKYTD++NSG DFMELV AHK
Sbjct: 780 ECLLGLLSSKTVVYVTHQVEFLPAADLILVMKDGKITQCGKYTDLLNSGADFMELVGAHK 839
Query: 844 QALSTLDSIEGRPLSEKGSANGENDGTSATDGVVKEVENKEVQNDREDKVAEPQRQLVQE 903
+ALSTLDS++G +S + +A ++ S T G ++ K+ QN + DK +EPQ QLVQE
Sbjct: 840 KALSTLDSLDGATVSNEINALEQDVNVSGTYGFKEKEARKDEQNGKTDKKSEPQGQLVQE 899
Query: 904 EEREKGKVEFSVYWKYITAAYGGVLVPFILLAQTLFQILQIASNYWIAWATPASKDIKPR 963
EEREKGKV FSVYWK IT AYGG LVPFILLAQ LFQ LQI SNYW+AWATP S D++P
Sbjct: 900 EEREKGKVGFSVYWKCITTAYGGALVPFILLAQILFQALQIGSNYWMAWATPISSDVEPP 959
Query: 964 VTGSMLLIVFVALAFGSSFCILARSTLLATAGYKTATLLFNKMHYCIFRAPMSFFDATPS 1023
V G+ L+ V+V LA GSSFCILAR+ LL TAGYKTAT+LFNKMH+CIFRAPMSFFD+TPS
Sbjct: 960 VEGTTLIAVYVGLAIGSSFCILARAMLLVTAGYKTATILFNKMHFCIFRAPMSFFDSTPS 1019
Query: 1024 GRIINRASTDQSAVDLSIPALIGSFAFSIIRVLGVIGVMSLVAWQVFIVFIPVIATCIWY 1083
GRI+NRASTDQSA+D IP I SFAF +I++LG+I VMS AWQVF+VFIPVIA IWY
Sbjct: 1020 GRILNRASTDQSALDTDIPYQIASFAFIMIQLLGIIAVMSQAAWQVFVVFIPVIAVSIWY 1079
Query: 1084 QQYYISSARELSRLVGVCKAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGYSRPT 1143
QQYYI SAREL+RLVGVCKAP+IQHF+ET+SG++TIRSFDQ+SRF +TNM+L DGYSRP
Sbjct: 1080 QQYYIPSARELARLVGVCKAPIIQHFSETISGTSTIRSFDQQSRFQETNMKLTDGYSRPK 1139
Query: 1144 FHVAAAMEWLGFRLDMLSNITFAFSLVFLISIPKGFIDPAIAGLAVTYGLTLNNLQAMLI 1203
F++A AMEWL FRLDMLS+ITFAFSLVFLISIP+GFIDP +AGLAVTYGL LN +QA +I
Sbjct: 1140 FNIAGAMEWLCFRLDMLSSITFAFSLVFLISIPQGFIDPGLAGLAVTYGLNLNMIQAWMI 1199
Query: 1204 WLACQMENKIISVERIFQYTCIPSEPPLEIEESRPNHSWPSHGKIDLRDLQVRYAPHMPF 1263
W C MENKIISVERI QYTCI SEPPL ++E+RP+ SWPS+G++ ++DLQVRYAPH+P
Sbjct: 1200 WNLCNMENKIISVERILQYTCISSEPPLVVDENRPDPSWPSYGEVGIQDLQVRYAPHLPL 1259
Query: 1264 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRT 1323
VLRG++C F G KTGIVGRTGSGKSTLIQTLFRIV+P +GQI+ID I+IS IGLHDLR+
Sbjct: 1260 VLRGLTCKFRGGLKTGIVGRTGSGKSTLIQTLFRIVQPTSGQIMIDSINISSIGLHDLRS 1319
Query: 1324 RLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGE 1383
RLSIIPQDP MFEGTVR+N+DPLEEY+DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGE
Sbjct: 1320 RLSIIPQDPTMFEGTVRNNLDPLEEYSDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGE 1379
Query: 1384 NWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRI 1443
NWSMGQRQLVCLGRVLLK+ K+L+LDEATASVDTATDNLIQQ+LRQ FS TVITIAHRI
Sbjct: 1380 NWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQQFSGSTVITIAHRI 1439
Query: 1444 TSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSFSQLVAEYTQRSSSSL 1492
TSV+ SDMVLLLS GLIEEYD+P +L+ENKSSSF+QLVAEYT RS+SS
Sbjct: 1440 TSVLHSDMVLLLSQGLIEEYDTPTRLIENKSSSFAQLVAEYTMRSNSSF 1488
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356501620|ref|XP_003519622.1| PREDICTED: ABC transporter C family member 3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2123 bits (5502), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1031/1489 (69%), Positives = 1230/1489 (82%), Gaps = 13/1489 (0%)
Query: 5 TDFLLKQAFLRGASGSLHLFLLLGLFGLWVWKKLKVGEGDHSGGSKERFKNKKALWYKLT 64
T LLK FL G SG LHL LL+ + WVW+K G GD S K++ N +K T
Sbjct: 11 TAVLLKPIFLHGLSGFLHLLLLVAVVLSWVWRKFTAGPGDES---KKKPNNS---LFKTT 64
Query: 65 LVCCFVVSLSSLVLCLLSYFYWYGNGRSYDQLVILFDFGVRTLGWGAICVYLRTVFLNLR 124
+ +S + +LC ++YFYWY +G S ++LV L D ++TL WG +CV L+ F +
Sbjct: 65 VFSSLALSAFNFLLCFINYFYWYTSGWSEEKLVTLLDLALKTLAWGVVCVCLQKAFFSSG 124
Query: 125 QPKLPMLLKIWWGFYVFISCYCLIVDIVLYQ-KQVNLPIQYLVSDVVSVITGLFPCFVGF 183
Q + W+ FY+ +SCYC++VDIV+ ++V+LP QYLVSD VS G F C+VG+
Sbjct: 125 QRRFSFFFSAWFTFYLSVSCYCIVVDIVVMSGRRVSLPTQYLVSDAVSTCVGFFFCYVGY 184
Query: 184 MSKIEGEDTLILQEPLLKVDSGESEGTVASIKSRGADTVTPYSNAGLFSVLTYTWINSLI 243
K E +QEPLL DS ES+ T +G DTVTP+SNAG+ S+LT++W+ LI
Sbjct: 185 FVKNEVHVDNDIQEPLLNADSLESKET------KGGDTVTPFSNAGILSILTFSWVGPLI 238
Query: 244 ALGNKKTLDLEDVPQLDSGNSVVGVFATFKNKLETEAGLGSGLTTLKLIKAMFRSVWKDV 303
A+GNKKTLDLEDVPQLDS +SV+G F TF+ K+E + G + +TTLKL+K++ S WK++
Sbjct: 239 AVGNKKTLDLEDVPQLDSRDSVIGAFPTFREKVEADCGGINSVTTLKLVKSLIISAWKEI 298
Query: 304 LLTALVAIVCTLATYVGPYLIDTLVQYLSGKRDFENEGYALVSAFCVAKLVECLCQRFFV 363
L+TA + ++ TLA+YVGPYLID VQYL G+R +EN+GY LVSAF AKLVECL +R +
Sbjct: 299 LITAFLVLLKTLASYVGPYLIDGFVQYLGGQRLYENQGYFLVSAFFFAKLVECLTRRHWF 358
Query: 364 FRLEQLGIRLRAALIAMIYNKGLKLSSQAKQGNTSGEIINFMTVDAERVAELSWYIHDPW 423
FRL+Q+G+R+RA L+ MIYNK L LS Q+KQG+TSGEIINFMTVDAERV SWY+HD W
Sbjct: 359 FRLQQVGLRIRALLVTMIYNKALTLSCQSKQGHTSGEIINFMTVDAERVGVFSWYMHDLW 418
Query: 424 LFLFEVALSFLILYKSLGIASVAAFFGTVIFMLVNVPLSTVQEKFQNELMKSKDERMKAT 483
+ + +V L+ LILYK+LG+AS+AAF TVI ML NVPL ++QEKFQ +LM+SKD RMKAT
Sbjct: 419 MVVLQVTLALLILYKNLGLASIAAFVATVIIMLANVPLGSLQEKFQKKLMESKDTRMKAT 478
Query: 484 SEILRNMRILKLQGWELKFLSKTIDLRKSESGWLKRCLYTSSITSFVFWCAPTFVSVITF 543
SEILRNMRILKLQGWE+KFL K +LRK+E GWLK+ +YT+++T+FVFW +PTFVSV+TF
Sbjct: 479 SEILRNMRILKLQGWEMKFLLKITELRKNEQGWLKKYVYTAALTTFVFWGSPTFVSVVTF 538
Query: 544 GTCILLKVPLESGKVLSAIATFRLLQILIYKLPAIISMTIQTKVSLQRIASFFCLDELQP 603
GTC+L+ +PLESGK+LSA+ATFR LQ IY LP ISM QTKVSL RI SF LD+L+
Sbjct: 539 GTCMLIGIPLESGKILSALATFRTLQEPIYNLPDTISMIAQTKVSLDRIVSFLRLDDLRS 598
Query: 604 DLVEKQPRGSSETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLL 663
D+VEK P GSS+TAIE+ DGNFSWD+SS +PTL++INLKVFHGMRVAVCGTVGSGKS+LL
Sbjct: 599 DVVEKLPWGSSDTAIEVVDGNFSWDLSSPSPTLQNINLKVFHGMRVAVCGTVGSGKSTLL 658
Query: 664 SCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMDRERYNAVLDACSLEK 723
SC+LGEVPKISG LK+CGTKAYVAQS WIQSGKIEDNILFG+ MDRERY VL+ACSL+K
Sbjct: 659 SCVLGEVPKISGILKVCGTKAYVAQSSWIQSGKIEDNILFGECMDRERYEKVLEACSLKK 718
Query: 724 DLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFK 783
DLEILSFGDQT++GERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFK
Sbjct: 719 DLEILSFGDQTIIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFK 778
Query: 784 EVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVINSGTDFMELVDAHK 843
E LLGLL SKTV+YVTHQVEFLPAADL+LV+KDGKITQ GKYTD++NSG DFMELV AHK
Sbjct: 779 ECLLGLLCSKTVVYVTHQVEFLPAADLILVMKDGKITQCGKYTDLLNSGADFMELVGAHK 838
Query: 844 QALSTLDSIEGRPLSEKGSANGENDGTSATDGVVKEVENKEVQNDREDKVAEPQRQLVQE 903
+ALSTLDS++G +S + S ++ S G ++ ++K+ QN + D +EPQ QLVQE
Sbjct: 839 KALSTLDSLDGAAVSNEISVLEQDVNLSGAHGFKEKKDSKDEQNGKTDDKSEPQGQLVQE 898
Query: 904 EEREKGKVEFSVYWKYITAAYGGVLVPFILLAQTLFQILQIASNYWIAWATPASKDIKPR 963
EEREKGKV FSVYWK IT AYGG LVPFILLAQ LFQ LQI SNYW+ WATP S+D++P
Sbjct: 899 EEREKGKVGFSVYWKCITTAYGGALVPFILLAQILFQALQIGSNYWMVWATPISEDVQPP 958
Query: 964 VTGSMLLIVFVALAFGSSFCILARSTLLATAGYKTATLLFNKMHYCIFRAPMSFFDATPS 1023
V G+ L+ V+V LA GSSFCILAR+ LL TAGYKTAT+LFNKMH+CIFRAPMSFFD+TPS
Sbjct: 959 VEGTTLIAVYVGLAIGSSFCILARAILLVTAGYKTATILFNKMHFCIFRAPMSFFDSTPS 1018
Query: 1024 GRIINRASTDQSAVDLSIPALIGSFAFSIIRVLGVIGVMSLVAWQVFIVFIPVIATCIWY 1083
GRI+NRASTDQSA+D IP I SFAF +I++LG+I VMS AWQVF+VFIPVIA + Y
Sbjct: 1019 GRILNRASTDQSALDTDIPYQIASFAFILIQLLGIIAVMSQAAWQVFVVFIPVIAISVLY 1078
Query: 1084 QQYYISSARELSRLVGVCKAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGYSRPT 1143
QQYYI SARELSRLVGVCKAP+IQHFAET+SG+TTIRSFDQ+SRF +TNM+L DGYSRP
Sbjct: 1079 QQYYIPSARELSRLVGVCKAPIIQHFAETISGTTTIRSFDQQSRFQETNMKLTDGYSRPM 1138
Query: 1144 FHVAAAMEWLGFRLDMLSNITFAFSLVFLISIPKGFIDPAIAGLAVTYGLTLNNLQAMLI 1203
F++A A+EWL FRLDMLS+ITFAFSL+FLISIP+GFIDP +AGLAVTYGL LN +Q +I
Sbjct: 1139 FNIAGAVEWLCFRLDMLSSITFAFSLIFLISIPQGFIDPGLAGLAVTYGLNLNIVQGWMI 1198
Query: 1204 WLACQMENKIISVERIFQYTCIPSEPPLEIEESRPNHSWPSHGKIDLRDLQVRYAPHMPF 1263
W C MENKIISVERI QYTCIP EP L ++++RP+ SWPS+G++D++DL+VRYAPH+P
Sbjct: 1199 WNLCNMENKIISVERILQYTCIPCEPSLVVDDNRPDPSWPSYGEVDIQDLKVRYAPHLPL 1258
Query: 1264 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRT 1323
VLRG++C F G KTGIVGRTGSGKSTLIQTLFRIVEP AGQ++ID I+IS IGLHDLR+
Sbjct: 1259 VLRGLTCKFRGGLKTGIVGRTGSGKSTLIQTLFRIVEPTAGQVMIDSINISSIGLHDLRS 1318
Query: 1324 RLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGE 1383
RLSIIPQDP MFEGTVR+N+DPLEEYTDE+IWEALDKCQLGDEVRKKEGKLDSKVTENGE
Sbjct: 1319 RLSIIPQDPTMFEGTVRNNLDPLEEYTDEEIWEALDKCQLGDEVRKKEGKLDSKVTENGE 1378
Query: 1384 NWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRI 1443
NWSMGQRQLVCLGRVLLK+ K+L+LDEATASVDTATDNLIQQ+LRQHFSD TVITIAHRI
Sbjct: 1379 NWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDSTVITIAHRI 1438
Query: 1444 TSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSFSQLVAEYTQRSSSSL 1492
TSV+DSDMVLLLS GLIEEYD+P +LLENKSSSF+QLVAEYT RS+SS
Sbjct: 1439 TSVLDSDMVLLLSQGLIEEYDTPTRLLENKSSSFAQLVAEYTMRSNSSF 1487
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356566246|ref|XP_003551345.1| PREDICTED: ABC transporter C family member 3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2100 bits (5440), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1025/1495 (68%), Positives = 1209/1495 (80%), Gaps = 29/1495 (1%)
Query: 8 LLKQAFLRGASGSLHLFLLLGLFGLWVWKKL----KVGEGDHSGGSKERFKNKKALWYKL 63
+L+ FL S S+HLFLL+ + W+W K+ + S K R + L +K
Sbjct: 9 ILQPIFLHALSASIHLFLLVSVSLHWLWNKVTFTPPAAREEKSKEEKHRPNSNNTL-FKT 67
Query: 64 TLVCCFVVSLSSLVLCLLSYFYWYGNGRSYDQLVILFDFGVRTLGWGAICVYLRT----V 119
T+ C VS S VLCL +YFYWY +G S LV D ++TL WG + V L
Sbjct: 68 TVFCSLAVSAFSFVLCLFNYFYWYTSGWSEQNLVTFLDLALKTLAWGVVSVSLHNGFSFF 127
Query: 120 FLNLRQPKLPMLLKIWWGFYVFISCYCLIVDIVLYQKQVNLPIQYLVSDVVSVITGLFPC 179
F ++ + W FY+ SCY +V IV+ ++ PIQYLVSDVVS G F C
Sbjct: 128 FTEKKRFRFSFFFGAWCTFYLVFSCYSFVVGIVVLPER---PIQYLVSDVVSTCAGFFFC 184
Query: 180 FVGFMSKIEGEDTLILQEPLLKVDSGESEGTVASIKSRGADTVTPYSNAGLFSVLTYTWI 239
+V + K +G I +EPLL D+ VA +G DTVTP+S+AG+FSVLT++W+
Sbjct: 185 YVAYFVKNKGCAKGI-EEPLLNGDANVPNEKVA----KGGDTVTPFSHAGVFSVLTFSWV 239
Query: 240 NSLIALGNKKTLDLEDVPQLDSGNSVVGVFATFKNKLETE--AGLGSGLTTLKLIKAMFR 297
L+A+GNKKTLDLEDVPQLD+ +SVVG F +F++KLE + A + +TTLKL+K + +
Sbjct: 240 GPLVAVGNKKTLDLEDVPQLDTKDSVVGAFPSFRDKLEADCDANAINSITTLKLVKNLAK 299
Query: 298 SVWKDVLLTALVAIVCTLATYVGPYLIDTLVQYLSGKRDFENEGYALVSAFCVAKLVECL 357
S WK++L TA +A++ TLA+YVGPYLID VQYL G+R +EN+GY LV F AK+VECL
Sbjct: 300 SAWKEILFTAFLALLNTLASYVGPYLIDVFVQYLDGRRQYENQGYVLVFVFFFAKIVECL 359
Query: 358 CQRFFVFRLEQLGIRLRAALIAMIYNKGLKLSSQAKQGNTSGEIINFMTVDAERVAELSW 417
QR + FRL+Q+GIR+RA L+ MIYNK L LS Q+KQG+TSGEIINFMTVDAERV SW
Sbjct: 360 SQRHWFFRLQQIGIRMRALLVTMIYNKALTLSCQSKQGHTSGEIINFMTVDAERVGNFSW 419
Query: 418 YIHDPWLFLFEVALSFLILYKSLGIASVAAFFGTVIFMLVNVPLSTVQEKFQNELMKSKD 477
Y+HD W+ +V L+ LILYKSLG+AS+AA TV+ ML NVPL ++QEKFQN+LM+SKD
Sbjct: 420 YMHDLWMVALQVVLALLILYKSLGLASIAALVATVVVMLANVPLGSLQEKFQNKLMESKD 479
Query: 478 ERMKATSEILRNMRILKLQGWELKFLSKTIDLRKSESGWLKRCLYTSSITSFVFWCAPTF 537
RMKATSEILRNMRILKLQGWE+KFLSK I+LRK+E GWLK+ +YT+++T+FVFW APTF
Sbjct: 480 TRMKATSEILRNMRILKLQGWEMKFLSKVIELRKTEQGWLKKYVYTAAMTTFVFWGAPTF 539
Query: 538 VSVITFGTCILLKVPLESGKVLSAIATFRLLQILIYKLPAIISMTIQTKVSLQRIASFFC 597
+SV+TFGTC+L+ +PLESGK+LSA+ATFR+LQ IY LP ISM QTKVSL RI+SF C
Sbjct: 540 ISVVTFGTCMLIGIPLESGKILSALATFRILQEPIYNLPDTISMIAQTKVSLDRISSFLC 599
Query: 598 LDELQPDLVEKQPRGSSETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGS 657
LD+L+ D+VEK PRGSS+TAIE+ DG FSWD+SS NP L++IN+KVFHGMRVAVCGTVGS
Sbjct: 600 LDDLRSDVVEKLPRGSSDTAIEVIDGTFSWDLSSPNPKLQNINIKVFHGMRVAVCGTVGS 659
Query: 658 GKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMDRERYNAVLD 717
GKS+LLSC+LGEVPKISG LK+CGTKAYVAQSPWIQSGKIEDNILFG+ MDRERY VL+
Sbjct: 660 GKSTLLSCVLGEVPKISGILKVCGTKAYVAQSPWIQSGKIEDNILFGERMDRERYEKVLE 719
Query: 718 ACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHT 777
ACSL+KDLEILSFGDQTV+GERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHT
Sbjct: 720 ACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHT 779
Query: 778 GSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVINSGTDFME 837
GSHLFKE LLGLL+SKTV+YVTHQVEFLPAADL+LV+KDGKITQ GKYTD++NSGTDFME
Sbjct: 780 GSHLFKECLLGLLSSKTVVYVTHQVEFLPAADLILVMKDGKITQCGKYTDLLNSGTDFME 839
Query: 838 LVDAHKQALSTLDSIEGRPLSEKGSANGENDGTSATDGVVKEVENKEVQNDREDKVAEPQ 897
LV AHK+ALSTLDS++ S + S E D ++ V KE +E EP+
Sbjct: 840 LVGAHKKALSTLDSLDEVAKSNEISTL-EQDVNVSSPHVFKE---------KEASREEPK 889
Query: 898 RQLVQEEEREKGKVEFSVYWKYITAAYGGVLVPFILLAQTLFQILQIASNYWIAWATPAS 957
QLVQEEEREKGKV F VYW YIT AYGG LVPFILLAQ LF+ LQI SNYW+AWATP S
Sbjct: 890 GQLVQEEEREKGKVGFLVYWNYITTAYGGALVPFILLAQILFEALQIGSNYWMAWATPIS 949
Query: 958 KDIKPRVTGSMLLIVFVALAFGSSFCILARSTLLATAGYKTATLLFNKMHYCIFRAPMSF 1017
D++P V G+ L++V+V LA GSSFC+L RS LL T GYKTAT+LFNKMH+CIFRAPMSF
Sbjct: 950 TDVEPPVGGTTLIVVYVVLAVGSSFCVLVRSMLLVTVGYKTATILFNKMHFCIFRAPMSF 1009
Query: 1018 FDATPSGRIINRASTDQSAVDLSIPALIGSFAFSIIRVLGVIGVMSLVAWQVFIVFIPVI 1077
FD+TPSGR++NRASTDQS VD IP IGSFAFS+I++LG+I VMS VAWQVFIVFIPVI
Sbjct: 1010 FDSTPSGRVLNRASTDQSTVDTDIPYQIGSFAFSMIQLLGIIAVMSQVAWQVFIVFIPVI 1069
Query: 1078 ATCIWYQQYYISSARELSRLVGVCKAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMD 1137
A IWYQQYYI SARELSRLVGVCKAP+IQHFAET+SG++TIRSFDQ+SRF +TNM+L D
Sbjct: 1070 AVSIWYQQYYIPSARELSRLVGVCKAPIIQHFAETISGTSTIRSFDQQSRFQETNMKLTD 1129
Query: 1138 GYSRPTFHVAAAMEWLGFRLDMLSNITFAFSLVFLISIPKGFIDPAIAGLAVTYGLTLNN 1197
GYSRP F++A AMEWL FRLDMLS+ITFAFSL+FLISIP G IDP IAGLAVTYGL LN
Sbjct: 1130 GYSRPKFNIAGAMEWLCFRLDMLSSITFAFSLIFLISIPTGIIDPGIAGLAVTYGLNLNM 1189
Query: 1198 LQAMLIWLACQMENKIISVERIFQYTCIPSEPPLEIEESRPNHSWPSHGKIDLRDLQVRY 1257
+QA +IW C +ENKIISVERI QYT IP EPPL +E++RP+ SWP +G++D++DLQVRY
Sbjct: 1190 IQAWVIWNLCNLENKIISVERILQYTSIPCEPPLVVEDNRPDPSWPLYGEVDIQDLQVRY 1249
Query: 1258 APHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIG 1317
APH+P VLRG++C F G KTGIVGRTGSGKSTLIQTLFRIVEP +GQ++ID I+IS IG
Sbjct: 1250 APHLPLVLRGLTCKFHGGMKTGIVGRTGSGKSTLIQTLFRIVEPTSGQVMIDNINISSIG 1309
Query: 1318 LHDLRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSK 1377
LHDLR+RLSIIPQDP MFEGTVR+N+DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDS
Sbjct: 1310 LHDLRSRLSIIPQDPTMFEGTVRNNLDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDST 1369
Query: 1378 VTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVI 1437
V+ENGENWSMGQRQLVCLGRVLLK+ K+L+LDEATASVDTATDNLIQQ+LRQHFSD TVI
Sbjct: 1370 VSENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDSTVI 1429
Query: 1438 TIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSFSQLVAEYTQRSSSSL 1492
TIAHRITSV+DSDMVLLLS GLIEEYD+P LLENKSSSF+QLVAEYT RS SS
Sbjct: 1430 TIAHRITSVLDSDMVLLLSQGLIEEYDTPTTLLENKSSSFAQLVAEYTMRSKSSF 1484
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147800077|emb|CAN75340.1| hypothetical protein VITISV_007527 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2088 bits (5410), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1033/1491 (69%), Positives = 1218/1491 (81%), Gaps = 37/1491 (2%)
Query: 2 YSGTDFLLKQAFLRGASGSLHLFLLLGLFGLWVWKKLKVGEGDHSGGSKERFKNKKALWY 61
YSG FLL LR S S HL LLL LF W KK+K+G + E K +Y
Sbjct: 4 YSGIGFLLNPTSLRAFSASFHLVLLLFLFVSWACKKIKMG-------ALENCKRTGFSYY 56
Query: 62 KLTLVCCFVVSLSSLVLCLLSYFYWYGNGRSYDQLVILFDFGVRTLGWGAICVYLRTVFL 121
K VCC +S+ +L L L+YFYWY NG S +QLV L D +RT W +CVYL T FL
Sbjct: 57 KQIFVCCLGLSVFNLALFFLNYFYWYKNGWSDEQLVTLSDLALRTFAWATVCVYLHTQFL 116
Query: 122 NLRQPKLPMLLKIWWGFYVFISCYCLIVDIVLYQKQVNLPIQYLVSDVVSVITGLFPCFV 181
+PK P L++WWGFY ISCYCL++DIV ++ + PIQ+LV D V VITGLF C++
Sbjct: 117 GSVEPKFPFSLRVWWGFYFSISCYCLVIDIV--KQHQSQPIQFLVPDAVYVITGLFLCYL 174
Query: 182 GFMSKIEGEDTLILQEPLLKVDSGESEGTVASIKSRGADTVTPYSNAGLFSVLTYTWINS 241
G K +GE++ IL+E LL S VAS KS+G +TVTP+SNAG+FS+LT++W+
Sbjct: 175 GLWGKNQGEES-ILRESLLH-GSASISTRVASNKSKGEETVTPFSNAGVFSLLTFSWMGP 232
Query: 242 LIALGNKKTLDLEDVPQLDSGNSVVGVFATFKNKLETEAGLGSGLTTLKLIKAMFRSVWK 301
LIALGNKKTLDLEDVPQLD+ NSVVG F F++KLE + G GSG+TTLKL+KAM S W
Sbjct: 233 LIALGNKKTLDLEDVPQLDAVNSVVGGFPIFRSKLEGDGGGGSGVTTLKLVKAMILSAWA 292
Query: 302 DVLLTALVAIVCTLATYVGPYLIDTLVQYLSGKRDFENEGYALVSAFCVAKLVECLCQRF 361
++LL+AL A++ TLA+YVGPYLIDT VQYL+G+R F+NEGY LVSAF VAKLVECL R
Sbjct: 293 EILLSALFALLYTLASYVGPYLIDTFVQYLNGQRQFKNEGYFLVSAFLVAKLVECLSMRH 352
Query: 362 FVFRLEQLGIRLRAALIAMIYNKGLKLSSQAKQGNTSGEIINFMTVDAERVAELSWYIHD 421
+ FRL+Q+GIR+RA L+ IYNK L +S +KQ +TSGEIINF++VDAER+ + WY+HD
Sbjct: 353 WFFRLQQVGIRMRAVLVTKIYNKVLAVSYHSKQCHTSGEIINFISVDAERIGDFGWYMHD 412
Query: 422 PWLFLFEVALSFLILYKSLGIASVAAFFGTVIFMLVNVPLSTVQEKFQNELMKSKDERMK 481
PW+ +VAL+ LILYK+LG+AS+AAFF TVI ML NVPL+ QEKFQ++LM+SKD+RMK
Sbjct: 413 PWMVTLQVALALLILYKNLGLASIAAFFATVIIMLANVPLAKFQEKFQDKLMESKDKRMK 472
Query: 482 ATSEILRNMRILKLQGWELKFLSKTIDLRKSESGWLKRCLYTSSITSFVFWCAPTFVSVI 541
+TSEILRNMRILKL G ++E+GWLK+ +YT +IT+FVFW P FVSV+
Sbjct: 473 STSEILRNMRILKLSGMG----------NENETGWLKKYVYTLAITTFVFWVGPIFVSVV 522
Query: 542 TFGTCILLKVPLESGKVLSAIATFRLLQILIYKLPAIISMTIQTKVSLQRIASFFCLDEL 601
+FGT +L+ +PLESGK+LS++ATFR+LQ IY LP ISM QTKVSL RIASF LD+L
Sbjct: 523 SFGTAMLMGIPLESGKILSSLATFRILQEPIYNLPDTISMIAQTKVSLDRIASFLRLDDL 582
Query: 602 QPDLVEKQPRGSSETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSS 661
QPD+VEK P+G+S TAIEI +GNFSWD+SS +PTLKDINL+V HGMRVAVCG VGSGKSS
Sbjct: 583 QPDVVEKLPKGTSSTAIEIVNGNFSWDLSSPHPTLKDINLQVHHGMRVAVCGAVGSGKSS 642
Query: 662 LLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMDRERYNAVLDACSL 721
LLSCILGEVPKISGTLKL GTKAYVAQSPWIQ GKIE+NILFGKEMDRERY VLDAC+L
Sbjct: 643 LLSCILGEVPKISGTLKLSGTKAYVAQSPWIQGGKIEENILFGKEMDRERYERVLDACTL 702
Query: 722 EKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHL 781
+KDLEIL FGDQTV+GERGINLSGGQKQRIQIARALYQDADI+LFDDPFSAVDAHTG+HL
Sbjct: 703 KKDLEILPFGDQTVIGERGINLSGGQKQRIQIARALYQDADIFLFDDPFSAVDAHTGTHL 762
Query: 782 FKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVINSGTDFMELVDA 841
FKE LLGLL+SKTV+YVTHQV +K+G+ITQAGKY D++N G+DF+ELV A
Sbjct: 763 FKECLLGLLDSKTVVYVTHQV-----------MKEGRITQAGKYNDILNYGSDFVELVGA 811
Query: 842 HKQALSTLDSIEGRPLSEKGSANGEND-GTSATDGVVKEVENKEVQNDREDKVAEPQRQL 900
+K+ALS L+SIE +EK S EN T +T VV + EN+ Q + P+ QL
Sbjct: 812 NKKALSALESIE----AEKSSIMSENSVDTGSTSEVVPKEENRNGQTGNIEGTDGPKAQL 867
Query: 901 VQEEEREKGKVEFSVYWKYITAAYGGVLVPFILLAQTLFQILQIASNYWIAWATPASKDI 960
VQEEEREKGKV FSVYWKYIT AYGG LVPFILL+Q LFQ+LQI SNYW+AWATP S+D+
Sbjct: 868 VQEEEREKGKVGFSVYWKYITTAYGGALVPFILLSQILFQLLQIGSNYWMAWATPVSEDV 927
Query: 961 KPRVTGSMLLIVFVALAFGSSFCILARSTLLATAGYKTATLLFNKMHYCIFRAPMSFFDA 1020
KP V GS L++V+VALA GSS C+L+R+ L+ TAGY+TAT+LFNKMH IFRAPMSFFDA
Sbjct: 928 KPAVGGSTLILVYVALAIGSSLCVLSRAMLVVTAGYRTATILFNKMHLSIFRAPMSFFDA 987
Query: 1021 TPSGRIINRASTDQSAVDLSIPALIGSFAFSIIRVLGVIGVMSLVAWQVFIVFIPVIATC 1080
TPSGRI+NRASTDQSAVD+ IP +I AFS I++LG+I VMS V WQVFIVF+P+IATC
Sbjct: 988 TPSGRILNRASTDQSAVDMDIPMVIWKCAFSFIQLLGIIAVMSQVVWQVFIVFVPMIATC 1047
Query: 1081 IWYQQYYISSARELSRLVGVCKAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGYS 1140
IWYQ+YYISSAREL+RLVGVCKAP+IQHF+ET+SGSTTIRSFDQESRF DTNM+L+DGY+
Sbjct: 1048 IWYQRYYISSARELARLVGVCKAPVIQHFSETISGSTTIRSFDQESRFRDTNMKLIDGYT 1107
Query: 1141 RPTFHVAAAMEWLGFRLDMLSNITFAFSLVFLISIPKGFIDPAIAGLAVTYGLTLNNLQA 1200
RP F+ AAAMEWL FRLD+LS+ITFAFSLVFLISIP+G IDP IAGLAVTYGL LN LQA
Sbjct: 1108 RPKFNSAAAMEWLCFRLDVLSSITFAFSLVFLISIPEGAIDPGIAGLAVTYGLNLNTLQA 1167
Query: 1201 MLIWLACQMENKIISVERIFQYTCIPSEPPLEIEESRPNHSWPSHGKIDLRDLQVRYAPH 1260
++W C MENKIISVER+ QYT IPSEPPL +E ++P SWPSHG++D+RDLQVRYAPH
Sbjct: 1168 WVVWNLCNMENKIISVERMLQYTSIPSEPPLVMEGNKPACSWPSHGEVDIRDLQVRYAPH 1227
Query: 1261 MPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHD 1320
+P VLRG++C FPG KTGIVGRTGSGKSTLIQTLFRIVEP AG+I+IDG +ISLIGLHD
Sbjct: 1228 LPLVLRGLTCNFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIMIDGTNISLIGLHD 1287
Query: 1321 LRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTE 1380
LR+RLSIIPQDP MFEGTVRSN+DPLEEY+DEQIWEALDKCQLGDEVRKKEGKLDS V E
Sbjct: 1288 LRSRLSIIPQDPTMFEGTVRSNLDPLEEYSDEQIWEALDKCQLGDEVRKKEGKLDSAVNE 1347
Query: 1381 NGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIA 1440
NGENWSMGQRQLVCLGRVLLK+ K+L+LDEATASVDTATDNLIQQ+LRQHF D TVITIA
Sbjct: 1348 NGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFVDSTVITIA 1407
Query: 1441 HRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSFSQLVAEYTQRSSSS 1491
HRITSV+DSDMVLLL HGLIEE+D+P +LLENKSSSF++LVAEYT RS S+
Sbjct: 1408 HRITSVLDSDMVLLLDHGLIEEHDTPARLLENKSSSFAKLVAEYTVRSKSN 1458
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449465513|ref|XP_004150472.1| PREDICTED: ABC transporter C family member 3-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 2081 bits (5392), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1012/1492 (67%), Positives = 1202/1492 (80%), Gaps = 14/1492 (0%)
Query: 3 SGTDFLLKQAFLRGASGSLHLFLLLGLFGLWVWKKLKVGEGDHSGGSKERFKNKKALWYK 62
S FLL+ + G SG HL LLL LWV K K G G ER +L+ K
Sbjct: 22 SAAHFLLEPSLAHGLSGLAHLVLLLAFCFLWVCFKFKAGCG-------ERQTETGSLYVK 74
Query: 63 LTLVCCFVVSLSSLVLCLLSYFYWYGNGRSYDQLVILFDFGVRTLGWGAICVYLRTVFLN 122
T +CC V+S+ +LV L FYWY NG S LV L DFG++ L WG + L +
Sbjct: 75 GTFMCCLVISVYNLVFLSLDCFYWYRNGWSEGFLVTLLDFGLKALAWGTVSFCLHSQVSK 134
Query: 123 LRQPKLPMLLKIWWGFYVFISCYCLIVDIVLYQKQVNLPIQYLVSDVVSVITGLFPCFVG 182
+ + K + L++WW Y +SCYCL VD V Y + +LPI+YLVSDV+SV+ GL +VG
Sbjct: 135 IGKLKFAIHLRVWWVSYFAVSCYCLTVDSVHYSQTHSLPIRYLVSDVISVVFGLLIVYVG 194
Query: 183 FMSKIEGEDTLILQEPLLKVDSGE---SEGTVASIKSRGADTVTPYSNAGLFSVLTYTWI 239
F K E L+E LL ++ S G+V +G +TVTPY AG+FS+L+++W+
Sbjct: 195 FFVKSVSEQD-PLEEHLLNGETRYTTLSNGSVELKNCKGEETVTPYETAGIFSILSFSWM 253
Query: 240 NSLIALGNKKTLDLEDVPQLDSGNSVVGVFATFKNKLETEAGLGSGLTTLKLIKAMFRSV 299
LIA G KK LDLED+PQL S ++V G F +NKLE+E G + +TTL L K + +
Sbjct: 254 GPLIATGKKKALDLEDIPQLASRDAVSGTFQILRNKLESECGTINRVTTLSLAKCLLYTA 313
Query: 300 WKDVLLTALVAIVCTLATYVGPYLIDTLVQYLSGKRDFENEGYALVSAFCVAKLVECLCQ 359
WK++LLTA+ A + TLATYVGPYLIDT VQYL+G RDFENEGY L F +AKLVECL
Sbjct: 314 WKEILLTAVFAFIYTLATYVGPYLIDTFVQYLNGHRDFENEGYVLACVFFLAKLVECLAM 373
Query: 360 RFFVFRLEQLGIRLRAALIAMIYNKGLKLSSQAKQGNTSGEIINFMTVDAERVAELSWYI 419
R + FR++Q+GIR+RAAL+AMIYNKGL LS Q++Q +TSGEIINFMTVDAERV + SWY+
Sbjct: 374 RHWFFRVQQVGIRVRAALVAMIYNKGLTLSCQSRQQHTSGEIINFMTVDAERVGDFSWYM 433
Query: 420 HDPWLFLFEVALSFLILYKSLGIASVAAFFGTVIFMLVNVPLSTVQEKFQNELMKSKDER 479
HD WL +F+V L+ L+LYK+LG+AS++AF T+ ML+N+PL +QEKFQ+++M+SKD R
Sbjct: 434 HDVWLVVFQVGLALLVLYKNLGLASISAFVATIAIMLINIPLGKLQEKFQDKIMESKDTR 493
Query: 480 MKATSEILRNMRILKLQGWELKFLSKTIDLRKSESGWLKRCLYTSSITSFVFWCAPTFVS 539
MKATSEILRNMRILKLQGWE+KFLSK +LR E+GWLK+ LYT S+T+FVFW APTFVS
Sbjct: 494 MKATSEILRNMRILKLQGWEMKFLSKISELRNIEAGWLKKFLYTLSVTTFVFWGAPTFVS 553
Query: 540 VITFGTCILLKVPLESGKVLSAIATFRLLQILIYKLPAIISMTIQTKVSLQRIASFFCLD 599
VITFGTC+L+ +PLESGKVLSA+ATFR+LQ IY LP ISM +QTKVSL RI +F LD
Sbjct: 554 VITFGTCMLVGIPLESGKVLSALATFRILQEPIYNLPDTISMVVQTKVSLDRIVAFLRLD 613
Query: 600 ELQPDLVEKQPRGSSETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGK 659
+LQ D++E+ PRGSS TA+EI +GNFSWD SS N TL+DIN KV HGMRVAVCGTVGSGK
Sbjct: 614 DLQADIIERVPRGSSTTAVEIVNGNFSWDSSSSNLTLRDINFKVEHGMRVAVCGTVGSGK 673
Query: 660 SSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMDRERYNAVLDAC 719
SSLLSCILGEVPK SG L++CG+KAYVAQSPWIQSGKIEDNILF KEMDRERY VL+AC
Sbjct: 674 SSLLSCILGEVPKTSGNLRVCGSKAYVAQSPWIQSGKIEDNILFSKEMDRERYKRVLEAC 733
Query: 720 SLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGS 779
LEKDLEILSFGDQTV+GERGINLSGGQKQRIQIARALYQD DIYLFDDPFSAVDAHTGS
Sbjct: 734 CLEKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDVDIYLFDDPFSAVDAHTGS 793
Query: 780 HLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVINSGTDFMELV 839
HLFKE LLG+L+SKTV+YVTHQVEFLPAADL+LV+KDG+ITQAGKY +++ SGTDFM LV
Sbjct: 794 HLFKECLLGVLSSKTVIYVTHQVEFLPAADLILVMKDGRITQAGKYEEILRSGTDFMALV 853
Query: 840 DAHKQALSTLDS-IEGRPLSEKGSANGENDGTSATDGVVKEVENKEVQNDREDKVAEPQR 898
AH++ALS ++S +EG S K S + E++ +T+G+ E + ++Q+ R ++ +
Sbjct: 854 GAHEEALSAINSSVEGD--SSKNSTSKEDESVISTNGITHEDDKSDIQDGRAVDASKSKG 911
Query: 899 QLVQEEEREKGKVEFSVYWKYITAAYGGVLVPFILLAQTLFQILQIASNYWIAWATPASK 958
QLVQEEEREKGKV F VYWKYI +AYGG LVP IL Q LFQILQI SNYW+AWATP S+
Sbjct: 912 QLVQEEEREKGKVGFPVYWKYIKSAYGGALVPIILFGQVLFQILQIGSNYWMAWATPVSE 971
Query: 959 DIKPRVTGSMLLIVFVALAFGSSFCILARSTLLATAGYKTATLLFNKMHYCIFRAPMSFF 1018
D++P V+ S L+IV+VAL+ GSS C+L RS LL TAG+K AT LF KMH IFRAPMSFF
Sbjct: 972 DMEPPVSTSRLIIVYVALSVGSSLCVLLRSALLVTAGFKAATELFVKMHTSIFRAPMSFF 1031
Query: 1019 DATPSGRIINRASTDQSAVDLSIPALIGSFAFSIIRVLGVIGVMSLVAWQVFIVFIPVIA 1078
DATPSGRI+NRASTDQS +D+ IP + SF F++I+++G+I VMS VAWQVFI+FIPV+A
Sbjct: 1032 DATPSGRILNRASTDQSTLDMDIPFRVASFCFNVIQLVGIIAVMSQVAWQVFIIFIPVMA 1091
Query: 1079 TCIWYQQYYISSARELSRLVGVCKAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDG 1138
CIWY+Q+YI SARELSRL+GVCKAP+IQ F+ET+SGSTTIRSFDQESRF DTNM+L D
Sbjct: 1092 VCIWYEQHYIPSARELSRLIGVCKAPVIQLFSETISGSTTIRSFDQESRFQDTNMKLTDA 1151
Query: 1139 YSRPTFHVAAAMEWLGFRLDMLSNITFAFSLVFLISIPKGFIDPAIAGLAVTYGLTLNNL 1198
YSRP FH AAAMEWL FRLD+LS+ITFA SL+FLISIP G IDP IAGL+VTYGL LN L
Sbjct: 1152 YSRPKFHTAAAMEWLCFRLDLLSSITFASSLIFLISIPVGVIDPGIAGLSVTYGLNLNML 1211
Query: 1199 QAMLIWLACQMENKIISVERIFQYTCIPSEPPLEIEESRPNHSWPSHGKIDLRDLQVRYA 1258
QA LIW C MENKIISVERIFQYT IPSEPPL IEE+RP+ SWP+ G+I+L +LQVRYA
Sbjct: 1212 QAWLIWNLCNMENKIISVERIFQYTSIPSEPPLVIEENRPDRSWPAFGEIELHNLQVRYA 1271
Query: 1259 PHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGL 1318
P +P VLRG++CTFPG KKTGIVGRTGSGKSTLIQTLFRIV+P AG I+ID I+I+ IGL
Sbjct: 1272 PQLPLVLRGVTCTFPGGKKTGIVGRTGSGKSTLIQTLFRIVDPVAGHIVIDNINITTIGL 1331
Query: 1319 HDLRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKV 1378
HDLR++LSIIPQDP MFEGTVRSN+DPLEEY DE IWEALDKCQLGDEVRKKEGKLDS V
Sbjct: 1332 HDLRSKLSIIPQDPTMFEGTVRSNLDPLEEYADEDIWEALDKCQLGDEVRKKEGKLDSTV 1391
Query: 1379 TENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVIT 1438
+ENGENWSMGQRQLVCLGRVLLK+ K+L+LDEATASVDTATDNLIQQ+LRQHFSDCTVIT
Sbjct: 1392 SENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVIT 1451
Query: 1439 IAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSFSQLVAEYTQRSSS 1490
IAHRITSV+ SDMVLLLSHGLIEEYD+P +LLE+K+SSFSQLVAEYTQRS S
Sbjct: 1452 IAHRITSVLSSDMVLLLSHGLIEEYDTPTRLLEDKASSFSQLVAEYTQRSGS 1503
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1495 | ||||||
| TAIR|locus:2090029 | 1514 | ABCC3 "ATP-binding cassette C3 | 0.986 | 0.974 | 0.636 | 0.0 | |
| TAIR|locus:2090049 | 1493 | ABCC7 "ATP-binding cassette C7 | 0.955 | 0.956 | 0.602 | 0.0 | |
| TAIR|locus:2090039 | 1466 | ABCC6 "ATP-binding cassette C6 | 0.914 | 0.932 | 0.610 | 0.0 | |
| TAIR|locus:2020235 | 1514 | ABCC5 "ATP-binding cassette C5 | 0.921 | 0.909 | 0.502 | 0.0 | |
| TAIR|locus:2043268 | 1516 | ABCC4 "ATP-binding cassette C4 | 0.896 | 0.883 | 0.411 | 9.5e-279 | |
| TAIR|locus:2081755 | 1539 | ABCC14 "ATP-binding cassette C | 0.491 | 0.477 | 0.392 | 1.9e-278 | |
| TAIR|locus:2077750 | 1453 | ABCC10 "ATP-binding cassette C | 0.472 | 0.486 | 0.419 | 7.8e-271 | |
| DICTYBASE|DDB_G0284867 | 1593 | abcC8 "ABC transporter C famil | 0.391 | 0.367 | 0.370 | 2.7e-218 | |
| UNIPROTKB|Q5F364 | 1525 | ABCC1 "Multidrug resistance-as | 0.457 | 0.448 | 0.332 | 8.2e-210 | |
| FB|FBgn0032456 | 1549 | MRP "Multidrug-Resistance like | 0.398 | 0.384 | 0.366 | 5e-206 |
| TAIR|locus:2090029 ABCC3 "ATP-binding cassette C3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4859 (1715.5 bits), Expect = 0., P = 0.
Identities = 950/1492 (63%), Positives = 1149/1492 (77%)
Query: 7 FLLKQAFLRGASGSLHXXXXXXXXXXXXXXXXXXGEGDHSGGSKERFKNKKALWYKLTXX 66
FLLK FLR SG LH GD G E K+++ +K
Sbjct: 31 FLLKPLFLRWLSGFLHSVLLLVLFFSWVRKKI---RGD--SGVTESLKDRRDFGFKSALF 85
Query: 67 XXXXXXXXXXXXXXXXYFYWYGNG-RSYDQLVILFDFGVRTLGWGAICVYLRTVFLNLRQ 125
FYWY +G +QLV F + + WG + + L +
Sbjct: 86 CSLALSLLNLVLMSLSGFYWYESGWLDNEQLVSSLGFLLGMVSWGVLSICLHRC-RDCEH 144
Query: 126 PKLPMLLKIWWGFYVFISCYCLIVDIVLYQKQVNLPIQYLVSDVVSVITGLFPCFVGFMS 185
K P LL++W FY+ +SCY L+VD V+Y+++ +P+ LV D+V+ I +F +V +
Sbjct: 145 KKAPFLLRLWLVFYLVVSCYSLVVDFVMYERRETVPVHLLVFDIVAFIAAVFLGYVAVLK 204
Query: 186 KIEGEDTLILQEPLLKVDSGES----EGTVASIKSRGADTVTPYSNAGLFSVLTYTWINS 241
K +L+EPLL + G+S + +V K+ G+ TPYS AG+ S+LT++W++
Sbjct: 205 KDRSNSNGVLEEPLL--NGGDSRVGGDDSVELNKTNGSGEATPYSRAGILSLLTFSWMSP 262
Query: 242 LIALGNKKTLDLEDVPQLDSGNSVVGVFATFKNKLET-EAGLGSGLTTLKLIKAM-FRSV 299
LI +GNKKTLDLEDVPQL +SVVG+ F++ LE+ + G SG+TT KLIKA+ F +
Sbjct: 263 LIDIGNKKTLDLEDVPQLHDTDSVVGLAPKFRSMLESPDGGERSGVTTFKLIKALYFTAQ 322
Query: 300 WKDVLLTALVAIVCTLATYVGPYLIDTLVQYLSGKRDFENEGYALVSAFCVAKLVECLCQ 359
W ++L+TA A + T+A+YVGP LIDT VQYL+G+R + +EGY LV F AK+VECL Q
Sbjct: 323 W-EILVTAFFAFIYTVASYVGPALIDTFVQYLNGRRQYNHEGYVLVITFFAAKIVECLSQ 381
Query: 360 RFFVFRLEQLGIRLRAALIAMIYNKGLKLSSQAKQGNTSGEIINFMTVDAERVAELSWYI 419
R + FRL+++GIR+R+AL+AMIY KGL LS Q+KQG TSGEIINFMTVDAER+ SWY+
Sbjct: 382 RHWFFRLQKVGIRMRSALVAMIYEKGLTLSCQSKQGRTSGEIINFMTVDAERIGNFSWYM 441
Query: 420 HDPWLFLFEVALSFLILYKSLGIASVAAFFGTVIFMLVNVPLSTVQEKFQNELMKSKDER 479
HDPW+ L +V L+ ILY++LG+AS+AA T+I ML+N P +QE+FQ +LM++KD R
Sbjct: 442 HDPWMVLLQVGLALWILYRNLGLASIAALVATIIVMLINFPFGRMQERFQEKLMEAKDSR 501
Query: 480 MKATSEILRNMRILKLQGWELKFLSKTIDLRKSESGWLKRCLYTSSITSFVFWCAPTFVS 539
MK+TSEILRNMRILKLQGWE+KFLSK DLRKSE GWLK+ +Y S++ SFVFW APT VS
Sbjct: 502 MKSTSEILRNMRILKLQGWEMKFLSKIFDLRKSEEGWLKKYVYNSAVISFVFWGAPTLVS 561
Query: 540 VITFGTCILLKVPLESGKVLSAIATFRLLQILIYKLPAIISMTIQTKVSLQRIASFFCLD 599
V TFG CILL +PLESGK+LSA+ATFR+LQ IY LP ISM +QTKVSL R+AS+ CLD
Sbjct: 562 VSTFGACILLGIPLESGKILSALATFRILQEPIYNLPDTISMIVQTKVSLDRLASYLCLD 621
Query: 600 ELQPDLVEKQPRGSSETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGK 659
LQPD+VE+ P+GSS+ A+E+ + SWD+SS NPTLKDIN KVF GM+VAVCGTVGSGK
Sbjct: 622 NLQPDIVERLPKGSSDVAVEVINSTLSWDVSSSNPTLKDINFKVFPGMKVAVCGTVGSGK 681
Query: 660 SSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMDRERYNAVLDAC 719
SSLLS +LGEVPK+SG+LK+CGTKAYVAQSPWIQSGKIEDNILFGK M+RERY+ VL+AC
Sbjct: 682 SSLLSSLLGEVPKVSGSLKVCGTKAYVAQSPWIQSGKIEDNILFGKPMERERYDKVLEAC 741
Query: 720 SLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGS 779
SL KDLEILSFGDQTV+GERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGS
Sbjct: 742 SLSKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGS 801
Query: 780 HLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVINSGTDFMELV 839
HLFKEVLLGLL SK+V+YVTHQVEFLPAADL+LV+KDG+I+QAGKY D++NSGTDFMEL+
Sbjct: 802 HLFKEVLLGLLCSKSVIYVTHQVEFLPAADLILVMKDGRISQAGKYNDILNSGTDFMELI 861
Query: 840 DAHKQALSTLDSIEGRPLSEKGSANGENDGTSATDGXXXXXXXXXXQNDREDKVAEPQRQ 899
AH++AL+ +DS++ +SEK + EN +ND+ + V EPQRQ
Sbjct: 862 GAHQEALAVVDSVDANSVSEKSALGQENVIVKDAIAVDEKLESQDLKNDKLESV-EPQRQ 920
Query: 900 LVQEEEREKGKVEFSVYWKYITAAYGGVLVPFILLAQTLFQILQIASNYWIAWATPASKD 959
++QEEEREKG V VYWKYIT AYGG LVPFILL Q LFQ+LQI SNYW+AWATP S+D
Sbjct: 921 IIQEEEREKGSVALDVYWKYITLAYGGALVPFILLGQVLFQLLQIGSNYWMAWATPVSED 980
Query: 960 IKPRVTGSMLLIVFVALAFGSSFCILARSTLLATAGYKTATLLFNKMHYCIFRAPMSFFD 1019
++ V S L+IV+VALAFGSS CIL R+TLL TAGYKTAT LF+KMH+CIFR+PMSFFD
Sbjct: 981 VQAPVKLSTLMIVYVALAFGSSLCILLRATLLVTAGYKTATELFHKMHHCIFRSPMSFFD 1040
Query: 1020 ATPSGRIINRASTDQSAVDLSIPALIGSFAFSIIRVLGVIGVMSLVAWQVFIVFIPVIAT 1079
+TPSGRI++RASTDQSAVDL +P GS A ++I+++G+IGVMS V+W VF+VFIPV+A
Sbjct: 1041 STPSGRIMSRASTDQSAVDLELPYQFGSVAITVIQLIGIIGVMSQVSWLVFLVFIPVVAA 1100
Query: 1080 CIWYQQYYISSARELSRLVGVCKAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGY 1139
IWYQ+YYI++ARELSRLVGVCKAPLIQHF+ET+SG+TTIRSF QE RF NM L DGY
Sbjct: 1101 SIWYQRYYIAAARELSRLVGVCKAPLIQHFSETISGATTIRSFSQEFRFRSDNMRLSDGY 1160
Query: 1140 SRPTFHVAAAMEWLGFRLDMLSNITFAFSLVFLISIPKGFIDPAIAGLAVTYGLTLNNLQ 1199
SRP F+ A AMEWL FRLDMLS++TF FSLVFL+SIP G IDP++AGLAVTYGL+LN LQ
Sbjct: 1161 SRPKFYTAGAMEWLCFRLDMLSSLTFVFSLVFLVSIPTGVIDPSLAGLAVTYGLSLNTLQ 1220
Query: 1200 AMLIWLACQMENKIISVERIFQYTCXXXXXXXXXXXXXXNHSWPSHGKIDLRDLQVRYAP 1259
A LIW C +ENKIISVERI QY SWPS G++++RDLQVRYAP
Sbjct: 1221 AWLIWTLCNLENKIISVERILQYASVPSEPPLVIESNRPEQSWPSRGEVEIRDLQVRYAP 1280
Query: 1260 HMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXX 1319
HMP VLRGI+CTF G +TGIVGRTGSGKSTLIQTLFRIVEP+A
Sbjct: 1281 HMPLVLRGITCTFKGGLRTGIVGRTGSGKSTLIQTLFRIVEPSAGEIRIDGVNILTIGLH 1340
Query: 1320 XXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVT 1379
R RLSIIPQDP MFEGT+RSN+DPLEEYTD+QIWEALDKCQLGDEVRKKE KLDS V+
Sbjct: 1341 DLRLRLSIIPQDPTMFEGTMRSNLDPLEEYTDDQIWEALDKCQLGDEVRKKEQKLDSSVS 1400
Query: 1380 ENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITI 1439
ENG+NWSMGQRQLVCLGRVLLKR KIL+LDEATASVDTATDNLIQ++LR+HFSDCTVITI
Sbjct: 1401 ENGDNWSMGQRQLVCLGRVLLKRSKILVLDEATASVDTATDNLIQKTLREHFSDCTVITI 1460
Query: 1440 AHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSFSQLVAEYTQRSSSS 1491
AHRI+SVIDSDMVLLLS+G+IEEYD+P +LLE+KSSSFS+LVAEYT RSSSS
Sbjct: 1461 AHRISSVIDSDMVLLLSNGIIEEYDTPVRLLEDKSSSFSKLVAEYTSRSSSS 1512
|
|
| TAIR|locus:2090049 ABCC7 "ATP-binding cassette C7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4452 (1572.2 bits), Expect = 0., P = 0.
Identities = 870/1443 (60%), Positives = 1076/1443 (74%)
Query: 49 SKERFKNKKALWYKLTXXXXXXXXXXXXXXXXXXYFYWYGNGRSYDQLVILFDFGVRTLG 108
+ ERFK+ + KL F + NG +L+IL D L
Sbjct: 55 TNERFKDMSLTYNKLVVICCETLSALNSVLLLLSCFNLHKNGWDRSELMILLDLLFTALS 114
Query: 109 WGAICVYLRTVFLNLRQPKLPMLLKIWWGFYVFISCYCLIVDIVLYQKQVNLPIQYLVSD 168
WGAI Y+R+ F K P+LL++WW Y SCY L+VDI LY+KQ + + L+SD
Sbjct: 115 WGAISFYIRSQFTYSHDQKFPILLRVWWVLYFMFSCYRLLVDIALYKKQELVSVHLLLSD 174
Query: 169 VVSVITGLFPCFVGFMSKIEGED-TLILQEPLLKVDSGESEGTVASIKSRGADTVTPYSN 227
V++V GLF C+ + +GE L+L+EPLL + +V K+ + VTP+SN
Sbjct: 175 VLAVSVGLFLCYSCLQKQGQGERINLLLEEPLLNGAESSAATSVQLDKAEDDEVVTPFSN 234
Query: 228 AGLFSVLTYTWINSLIALGNKKTLDLEDVPQLDSGNSVVGVFATFKNKLETEAGLGSGLT 287
AG S ++++W++ LI LGN+K +D EDVPQ+D+ + +F F++KLE + G +T
Sbjct: 235 AGFLSHVSFSWMSPLIVLGNEKIIDSEDVPQVDNSDRAEKLFWIFRSKLEWDDG-ERRIT 293
Query: 288 TLKLIKAMFRSVWKDVLLTALVAIVCTLATYVGPYLIDTLVQYLSGKRDFENEGYALVSA 347
T KLIKA+F SVW+D+LL+ L A V T++ YV PYL+DT VQYL+G+R + N+G LV+
Sbjct: 294 TYKLIKALFFSVWRDILLSTLFAFVYTVSCYVAPYLMDTFVQYLNGQRQYSNQGVVLVTT 353
Query: 348 FCVAKLVECLCQRFFVFRLEQLGIRLRAALIAMIYNKGLKLSSQAKQGNTSGEIINFMTV 407
F VAKLVEC +R + FRL++ GI +R+ L++MIY KGL L +KQG+TSGEIIN MTV
Sbjct: 354 FFVAKLVECQARRNWYFRLQKAGIGMRSVLVSMIYEKGLTLPCYSKQGHTSGEIINLMTV 413
Query: 408 DAERVAELSWYIHDPWLFLFEVALSFLILYKSLGIASVAAFFGTVIFMLVNVPLSTVQEK 467
DAER++ SWY+HDPW+ + +++L+ LILY+SLG+ S+AAF T + ML N+PL+ ++EK
Sbjct: 414 DAERISAFSWYMHDPWILVLQISLALLILYRSLGLGSIAAFAATFLVMLGNIPLAKLEEK 473
Query: 468 FQNELMKSKDERMKATSEILRNMRILKLQGWELKFLSKTIDLRKSESGWLKRCLYTSSIT 527
FQ LM+SKD RMK TSE L NMRILKLQGWE+KFL K +DLR E+GWLK+ +Y S+
Sbjct: 474 FQGNLMESKDNRMKKTSEALLNMRILKLQGWEMKFLHKILDLRGIEAGWLKKFVYNSAAI 533
Query: 528 SFVFWCAPTFVSVITFGTCILLKVPLESGKVLSAIATFRLLQILIYKLPAIISMTIQTKV 587
S V W AP+FVS FG C+LLK+PLESGK+++A+ATFR+LQ IYKLP ISM +QTKV
Sbjct: 534 SSVLWAAPSFVSATAFGACMLLKIPLESGKIIAALATFRILQTPIYKLPDTISMIVQTKV 593
Query: 588 SLQRIASFFCLDELQPDLVEKQPRGSSETAIEIADGNFSWDISSHNPTLKDINLKVFHGM 647
SL RIA+F CLD+LQ D +E+ P GSS+ +E+++G FSWD SS PTLKDI K+ HGM
Sbjct: 594 SLDRIATFLCLDDLQQDGMERLPSGSSKMDVEVSNGAFSWDDSSPIPTLKDIRFKIPHGM 653
Query: 648 RVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEM 707
+A+CGTVGSGKSSLLS ILGEVPKISG LK+CG KAY+AQSPWIQSGK+E+NILFGK M
Sbjct: 654 NIAICGTVGSGKSSLLSSILGEVPKISGNLKVCGRKAYIAQSPWIQSGKVEENILFGKPM 713
Query: 708 DRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFD 767
RE Y VL+ACSL KDLE+ F DQTV+GERGINLSGGQKQRIQIARALYQDADIYLFD
Sbjct: 714 QREWYQRVLEACSLNKDLEVFPFRDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFD 773
Query: 768 DPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTD 827
DPFSAVDAHTGSHLFKEVLLGLL +KTV+YVTHQ+EFLP ADL+LV+KDG+ITQAGKY +
Sbjct: 774 DPFSAVDAHTGSHLFKEVLLGLLRNKTVIYVTHQLEFLPEADLILVMKDGRITQAGKYNE 833
Query: 828 VINSGTDFMELVDAHKQALSTLDSIEGRPLSEKGSANGENDGTSATDGXXXXXXXXXXQN 887
++ SGTDFMELV AH AL+ +DS E KGSA+ ++ T++ + +
Sbjct: 834 ILESGTDFMELVGAHTDALAAVDSYE------KGSASAQS--TTSKESKVSND-----EE 880
Query: 888 DREDKVAEPQRQLVQEEEREKGKVEFSVYWKYITAAYGGVLVPFILLAQTLFQILQIASN 947
+E+ + P+ QLVQEEEREKGKV F+VY KY+ AYGG LVP IL+ Q LFQ+L I SN
Sbjct: 881 KQEEDLPSPKGQLVQEEEREKGKVGFTVYQKYMKLAYGGALVPIILVVQILFQVLNIGSN 940
Query: 948 YWIAWATPASKDIKPRVTGSMLLIVFVALAFGSSFCILARSTLLATAGYKTATLLFNKMH 1007
YW+AW TP SKD+KP V+GS L++V+V LA SSFCIL R+ L A G+K AT LFN+MH
Sbjct: 941 YWMAWVTPVSKDVKPLVSGSTLILVYVFLATASSFCILVRAMLSAMTGFKIATELFNQMH 1000
Query: 1008 YCIFRAPMSFFDATPSGRIINRASTDQSAVDLSIPALIGSFAFSIIRVLGVIGVMSLVAW 1067
+ IFRA MSFFDATP GRI+NRASTDQSAVDL +P+ + A + + +LG+IGVM VAW
Sbjct: 1001 FRIFRASMSFFDATPIGRILNRASTDQSAVDLRLPSQFSNLAIAAVNILGIIGVMGQVAW 1060
Query: 1068 QVFIVFIPVIATCIWYQQYYISSARELSRLVGVCKAPLIQHFAETVSGSTTIRSFDQESR 1127
QV IVFIPVIA C WY+QYYIS+AREL+RL G+ ++PL+QHF+ET+SG TTIRSFDQE R
Sbjct: 1061 QVLIVFIPVIAACTWYRQYYISAARELARLSGISRSPLVQHFSETLSGITTIRSFDQEPR 1120
Query: 1128 FIDTNMELMDGYSRPTFHVAAAMEWLGFRLDMLSNITFAFSLVFLISIPKGFIDPAIAGL 1187
F M L D YSR FH +AMEWL FRLD+LS + FA SLV L+S+P+G I+P+ AGL
Sbjct: 1121 FRTDIMRLNDCYSRLRFHAISAMEWLCFRLDLLSTVAFALSLVILVSVPEGVINPSFAGL 1180
Query: 1188 AVTYGLTLNNLQAMLIWLACQMENKIISVERIFQYTCXXXXXXXXXXXXXXNHSWPSHGK 1247
AVTY L LN+LQA LIW C +ENK+ISVER+ QY SWP G+
Sbjct: 1181 AVTYALNLNSLQATLIWTLCDLENKMISVERMLQYIDIPSEPSLVIESTRPEKSWPCRGE 1240
Query: 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXX 1307
I + +LQVRY PH+P VLRG++CTF G KTGIVGRTG GKSTLIQTLFRIVEPAA
Sbjct: 1241 ITICNLQVRYGPHLPMVLRGLTCTFRGGLKTGIVGRTGCGKSTLIQTLFRIVEPAAGEIR 1300
Query: 1308 XXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEV 1367
R+RLSIIPQ+P MFEGTVRSN+DPLEEY D+QIWEALDKCQLGDE+
Sbjct: 1301 IDGINILTIGLHDLRSRLSIIPQEPTMFEGTVRSNLDPLEEYADDQIWEALDKCQLGDEI 1360
Query: 1368 RKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSL 1427
RKKE KLDS V+ENG+NWS+GQRQLVCLGRVLLKR K+L+LDEATASVDTATD LIQ++L
Sbjct: 1361 RKKELKLDSPVSENGQNWSVGQRQLVCLGRVLLKRSKVLILDEATASVDTATDTLIQETL 1420
Query: 1428 RQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSFSQLVAEYTQR 1487
RQHFS CTVITIAHRI+SVIDSDMVLLL GLIEE+DSP +LLE+KSSSFS+LVAEYT
Sbjct: 1421 RQHFSGCTVITIAHRISSVIDSDMVLLLDQGLIEEHDSPARLLEDKSSSFSKLVAEYTAS 1480
Query: 1488 SSS 1490
S S
Sbjct: 1481 SDS 1483
|
|
| TAIR|locus:2090039 ABCC6 "ATP-binding cassette C6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4357 (1538.8 bits), Expect = 0., P = 0.
Identities = 848/1390 (61%), Positives = 1052/1390 (75%)
Query: 101 DFGVRTLGWGAICVYLRTVFLNLRQPKLPMLLKIWWGFYVFISCYCLIVDIVLYQKQVNL 160
D + L WG+I VYL + N + K+ LL++WW F+ +SCY L+VD VLY+KQ +
Sbjct: 95 DLLLAALTWGSISVYLFGRYTNSCEQKVLFLLRVWWVFFFVVSCYHLVVDFVLYKKQEMV 154
Query: 161 PIQYLVSDVVSVITGLFPCFVGFMSKIEGEDTLILQEPLLKVDSGESEGTVASIKSRGAD 220
+ +++SD+V V GLF C K EGE +L+EPLL S ES S +
Sbjct: 155 SVHFVISDLVGVCAGLFLCCSCLWKKGEGERIDLLKEPLLS--SAES--------SDNEE 204
Query: 221 TVTPYSNAGLFSVLTYTWINSLIALGNKKTLDLEDVPQLDSGNSVVGVFATFKNKLETEA 280
P+S AG+ S ++++W++ LI LGN+K +D++DVPQLD ++ +F F++KLE +
Sbjct: 205 VTAPFSKAGILSRMSFSWMSPLITLGNEKIIDIKDVPQLDRSDTTESLFWIFRSKLEWDD 264
Query: 281 GLGSGLTTLKLIKAMFRSVWKDVLLTALVAIVCTLATYVGPYLIDTLVQYLSGKRDFENE 340
G +TT KLIKA+F SVW+D++L+AL+A V T++ YV PYL+D VQYL+G R ++N+
Sbjct: 265 G-ERRITTFKLIKALFLSVWRDIVLSALLAFVYTVSCYVAPYLMDNFVQYLNGNRQYKNQ 323
Query: 341 GYALVSAFCVAKLVECLCQRFFVFRLEQLGIRLRAALIAMIYNKGLKLSSQAKQGNTSGE 400
GY LV+ F VAKLVEC QR + FR ++ G+ +R+ L++MIY KGL L +KQG+TSGE
Sbjct: 324 GYVLVTTFFVAKLVECQTQRQWFFRGQKAGLGMRSVLVSMIYEKGLTLPCHSKQGHTSGE 383
Query: 401 IINFMTVDAERVAELSWYIHDPWLFLFEVALSFLILYKSLGIASVAAFFGTVIFMLVNVP 460
IIN M VDA+R++ SW++HDPW+ + +V+L+ ILYKSLG+ S+AAF T++ ML N P
Sbjct: 384 IINLMAVDADRISAFSWFMHDPWILVLQVSLALWILYKSLGLGSIAAFPATILVMLANYP 443
Query: 461 LSTVQEKFQNELMKSKDERMKATSEILRNMRILKLQGWELKFLSKTIDLRKSESGWLKRC 520
+ ++EKFQ+ LMKSKD RMK TSE+L NM+ILKLQGWE+KFLSK ++LR E+GWLK+
Sbjct: 444 FAKLEEKFQSSLMKSKDNRMKKTSEVLLNMKILKLQGWEMKFLSKILELRHIEAGWLKKF 503
Query: 521 LYTSSITSFVFWCAPTFVSVITFGTCILLKVPLESGKVLSAIATFRLLQILIYKLPAIIS 580
+Y SS + V W AP+F+S FG C+LLK+PLESGK+L+A+ATFR+LQ IYKLP IS
Sbjct: 504 VYNSSAINSVLWAAPSFISATAFGACLLLKIPLESGKILAALATFRILQGPIYKLPETIS 563
Query: 581 MTIQTKVSLQRIASFFCLDELQPDLVEKQPRGSSETAIEIADGNFSWDISSHNPTLKDIN 640
M +QTKVSL RIASF CLD+LQ D+V + P GSSE A+EI++G FSWD SS PTL+D+N
Sbjct: 564 MIVQTKVSLNRIASFLCLDDLQQDVVGRLPSGSSEMAVEISNGTFSWDDSSPIPTLRDMN 623
Query: 641 LKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDN 700
KV GM VA+CGTVGSGKSSLLS ILGEVPKISG LK+CG KAY+AQSPWIQSGK+E+N
Sbjct: 624 FKVSQGMNVAICGTVGSGKSSLLSSILGEVPKISGNLKVCGRKAYIAQSPWIQSGKVEEN 683
Query: 701 ILFGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQD 760
ILFGK M+RE Y+ VL+ACSL KDLEIL F DQTV+GERGINLSGGQKQRIQIARALYQD
Sbjct: 684 ILFGKPMEREWYDRVLEACSLNKDLEILPFHDQTVIGERGINLSGGQKQRIQIARALYQD 743
Query: 761 ADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKIT 820
ADIYLFDDPFSAVDAHTGSHLFKEVLLGLL KTV+YVTHQVEFLP ADL+LV+KDGKIT
Sbjct: 744 ADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRHKTVIYVTHQVEFLPEADLILVMKDGKIT 803
Query: 821 QAGKYTDVINSGTDFMELVDAHKQALSTLDSIEGRPLSEKGSANGENDGTSATDGXXXXX 880
QAGKY ++++SGTDFMELV AH +AL+T+DS E SEK + + EN+ +
Sbjct: 804 QAGKYHEILDSGTDFMELVGAHTEALATIDSCETGYASEKSTTDKENEVLHHKE------ 857
Query: 881 XXXXXQNDREDKVAEPQRQLVQEEEREKGKVEFSVYWKYITAAYGGVLVPFILLAQTLFQ 940
+N ++K P QLVQEEEREKGKV F+VY KY+ AYGG ++P IL+ Q LFQ
Sbjct: 858 ---KQENGSDNK---PSGQLVQEEEREKGKVGFTVYKKYMALAYGGAVIPLILVVQVLFQ 911
Query: 941 ILQIASNYWIAWATPASKDIKPRVTGSMLLIVFVALAFGSSFCILARSTLLATAGYKTAT 1000
+L I SNYW+ W TP SKD++P V+G L++V+V LA SSFCIL R+ L+A G+K AT
Sbjct: 912 LLSIGSNYWMTWVTPVSKDVEPPVSGFTLILVYVLLAVASSFCILIRALLVAMTGFKMAT 971
Query: 1001 LLFNKMHYCIFRAPMSFFDATPSGRIINRASTDQSAVDLSIPALIGSFAFSIIRVLGVIG 1060
LF +MH IFRA MSFFDATP GRI+NRASTDQS DL +P A + I +LG+IG
Sbjct: 972 ELFTQMHLRIFRASMSFFDATPMGRILNRASTDQSVADLRLPGQFAYVAIAAINILGIIG 1031
Query: 1061 VMSLVAWQVFIVFIPVIATCIWYQQYYISSARELSRLVGVCKAPLIQHFAETVSGSTTIR 1120
V+ VAWQV IVFIPV+A C WY+QYYIS+AREL+RL G+ ++P++ HF+ET+SG TTIR
Sbjct: 1032 VIVQVAWQVLIVFIPVVAACAWYRQYYISAARELARLAGISRSPVVHHFSETLSGITTIR 1091
Query: 1121 SFDQESRFIDTNMELMDGYSRPTFHVAAAMEWLGFRLDMLSNITFAFSLVFLISIPKGFI 1180
SFDQE RF M L D YSR FH AMEWL FRL++LS FA SLV L+S P+G I
Sbjct: 1092 SFDQEPRFRGDIMRLSDCYSRLKFHSTGAMEWLCFRLELLSTFAFASSLVILVSAPEGVI 1151
Query: 1181 DPAIAGLAVTYGLTLNNLQAMLIWLACQMENKIISVERIFQYTCXXXXXXXXXXXXXXNH 1240
+P++AGLA+TY L LN LQA LIW C +ENK+ISVER+ QYT
Sbjct: 1152 NPSLAGLAITYALNLNTLQATLIWTLCDLENKMISVERMLQYTNIPSEPPLVIETTRPEK 1211
Query: 1241 SWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVE 1300
SWPS G+I + +LQVRY PH+P VL G++CTFPG KTGIVGRTG GKSTLIQTLFRIVE
Sbjct: 1212 SWPSRGEITICNLQVRYGPHLPMVLHGLTCTFPGGLKTGIVGRTGCGKSTLIQTLFRIVE 1271
Query: 1301 PAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDK 1360
PAA R+RLSIIPQDP MFEGT+RSN+DPLEEYTD+QIWEALD
Sbjct: 1272 PAAGEIRIDGINILSIGLHDLRSRLSIIPQDPTMFEGTIRSNLDPLEEYTDDQIWEALDN 1331
Query: 1361 CQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATD 1420
CQLGDEVRKKE KLDS V+ENG+NWS+GQRQLVCLGRVLLKR K+L+LDEATAS+DTATD
Sbjct: 1332 CQLGDEVRKKELKLDSPVSENGQNWSVGQRQLVCLGRVLLKRSKLLVLDEATASIDTATD 1391
Query: 1421 NLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSFSQL 1480
NLIQ++LR HF+DCTVITIAHRI+SVIDSDMVLLL GLI+E+DSP +LLE++SS FS+L
Sbjct: 1392 NLIQETLRHHFADCTVITIAHRISSVIDSDMVLLLDQGLIKEHDSPARLLEDRSSLFSKL 1451
Query: 1481 VAEYTQRSSS 1490
VAEYT S S
Sbjct: 1452 VAEYTTSSES 1461
|
|
| TAIR|locus:2020235 ABCC5 "ATP-binding cassette C5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3472 (1227.3 bits), Expect = 0., P = 0.
Identities = 713/1420 (50%), Positives = 957/1420 (67%)
Query: 94 DQLVILFDFGVRTLGWGAICVYLRTVFLNLRQP-KLPMLLKIWWGFYVFISCYC-LIVD- 150
D V+ F ++L W + +L + L + KLP L++IWW F F C C + VD
Sbjct: 109 DWFVLCFPAS-QSLAWFVLS-FL-VLHLKYKSSEKLPFLVRIWW-FLAFSICLCTMYVDG 164
Query: 151 IVLYQKQVNLPIQYLVSDVVSVITGL-FPCFVGF--MSKIE-GEDTLILQEPLLKVDSGE 206
L + + ++V+++ +V L F CF+ + +S I+ + LQEPLL E
Sbjct: 165 RRLAIEGWSRCSSHVVANL-AVTPALGFLCFLAWRGVSGIQVTRSSSDLQEPLLV----E 219
Query: 207 SEGTVASIKSRGADTVTPYSNAGLFSVLTYTWINSLIALGNKKTLDLEDVPQLDSGNSVV 266
E A +K VTPYS AGL S++T +W++ L++ G+K+ L+L+D+P L +
Sbjct: 220 EEA--ACLK------VTPYSTAGLVSLITLSWLDPLLSAGSKRPLELKDIPLLAPRDRAK 271
Query: 267 GVFATFKNKLETEAGLGSGLTTLKLIKAMFRSVWKDVLLTALVAIVCTLATYVGPYLIDT 326
+ K+ + L +A+ +S WK+ A+ A + TL +YVGPYLI
Sbjct: 272 SSYKVLKSNWKRCKSENPSKPP-SLARAIMKSFWKEAACNAVFAGLNTLVSYVGPYLISY 330
Query: 327 LVQYLSGKRDFENEGYALVSAFCVAKLVECLCQRFFVFRLEQLGIRLRAALIAMIYNKGL 386
V YL GK F +EGY L F +KL+E + R + ++ LG+ +R+AL AM+Y KGL
Sbjct: 331 FVDYLGGKEIFPHEGYVLAGIFFTSKLIETVTTRQWYMGVDILGMHVRSALTAMVYRKGL 390
Query: 387 KLSSQAKQGNTSGEIINFMTVDAERVAELSWYIHDPWLFLFEVALSFLILYKSLGIASVA 446
KLSS AKQ +TSGEI+N+M VD +R+ + SWY+HD W+ ++ L+ ILYKS+GIA+VA
Sbjct: 391 KLSSIAKQNHTSGEIVNYMAVDVQRIGDYSWYLHDIWMLPMQIVLALAILYKSVGIAAVA 450
Query: 447 AFFGTVIFMLVNVPLSTVQEKFQNELMKSKDERMKATSEILRNMRILKLQGWELKFLSKT 506
T+I +LV +PL+ VQE +Q++LM +KDERM+ TSE LRNMR+LKLQ WE ++ +
Sbjct: 451 TLVATIISILVTIPLAKVQEDYQDKLMTAKDERMRKTSECLRNMRVLKLQAWEDRYRVRL 510
Query: 507 IDLRKSESGWLKRCLYTSSITSFVFWCAPTFVSVITFGTCILLKVPLESGKVLSAIATFR 566
++R+ E GWL++ LY+ + +F+FW +P FV+ +TF T I L L +G VLSA+ATFR
Sbjct: 511 EEMREEEYGWLRKALYSQAFVTFIFWSSPIFVAAVTFATSIFLGTQLTAGGVLSALATFR 570
Query: 567 LLQILIYKLPAIISMTIQTKVSLQRIASFFCLDELQPDLVEKQPRGSSETAIEIADGNFS 626
+LQ + P ++SM QTKVSL RI+ F +ELQ D PRG S AIEI DG F
Sbjct: 571 ILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEEELQEDATVVIPRGLSNIAIEIKDGVFC 630
Query: 627 WDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYV 686
WD S PTL I +KV GMRVAVCGTVGSGKSS +SCILGE+PKISG +++CGT YV
Sbjct: 631 WDPFSSRPTLSGIQMKVEKGMRVAVCGTVGSGKSSFISCILGEIPKISGEVRICGTTGYV 690
Query: 687 AQSPWIQSGKIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGG 746
+QS WIQSG IE+NILFG M++ +Y V+ ACSL+KD+E+ S GDQT++GERGINLSGG
Sbjct: 691 SQSAWIQSGNIEENILFGSPMEKTKYKNVIQACSLKKDIELFSHGDQTIIGERGINLSGG 750
Query: 747 QKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLP 806
QKQR+Q+ARALYQDADIYL DDPFSA+DAHTGS LF++ +L L KTV++VTHQVEFLP
Sbjct: 751 QKQRVQLARALYQDADIYLLDDPFSALDAHTGSDLFRDYILSALAEKTVVFVTHQVEFLP 810
Query: 807 AADLVLVIKDGKITQAGKYTDVINSGTDFMELVDAHKQALSTLD----SIEG---RPLSE 859
AADL+LV+K+G+I Q+GKY D++ +GTDF LV AH +A+ +D S E P+ +
Sbjct: 811 AADLILVLKEGRIIQSGKYDDLLQAGTDFKALVSAHHEAIEAMDIPSPSSEDSDENPIRD 870
Query: 860 KGSANG------END----GTSATDGXXXXXXXXXXQNDREDKVAEPQRQLVQEEEREKG 909
+ END +G + ++ K + ++QLVQEEER KG
Sbjct: 871 SLVLHNPKSDVFENDIETLAKEVQEGGSASDLKAIKEKKKKAKRSR-KKQLVQEEERVKG 929
Query: 910 KVEFSVYWKYITAAYGGVLVPFILLAQTLFQILQIASNYWIAWATPASKDIKPRVTGSML 969
KV VY Y+ AAY G L+P I+LAQ FQ LQIASN+W+AWA P ++ + +V ++L
Sbjct: 930 KVSMKVYLSYMGAAYKGALIPLIILAQAAFQFLQIASNWWMAWANPQTEGDESKVDPTLL 989
Query: 970 LIVFVALAFGSSFCILARSTLLATAGYKTATLLFNKMHYCIFRAPMSFFDATPSGRIINR 1029
LIV+ ALAFGSS I R+ L+AT G A LF M +FRAPMSFFD+TP+GRI+NR
Sbjct: 990 LIVYTALAFGSSVFIFVRAALVATFGLAAAQKLFLNMLRSVFRAPMSFFDSTPAGRILNR 1049
Query: 1030 ASTDQSAVDLSIPALIGSFAFSIIRVLGVIGVMSLVAWQVFIVFIPVIATCIWYQQYYIS 1089
S DQS VDL IP +G FA + I++ G++ VM+ V WQVF++ +PV C W Q+YY++
Sbjct: 1050 VSIDQSVVDLDIPFRLGGFASTTIQLCGIVAVMTNVTWQVFLLVVPVAVACFWMQKYYMA 1109
Query: 1090 SARELSRLVGVCKAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGYSRPTFHVAAA 1149
S+REL R+V + K+P+I F E+++G+ TIR F QE RFI N+ L+D + RP F AA
Sbjct: 1110 SSRELVRIVSIQKSPIIHLFGESIAGAATIRGFGQEKRFIKRNLYLLDCFVRPFFCSIAA 1169
Query: 1150 MEWLGFRLDMLSNITFAFSLVFLISIPKGFIDPAIAGLAVTYGLTLNNLQAMLIWLACQM 1209
+EWL R+++LS + FAF +V L+S P G IDP++AGLAVTYGL LN + I C++
Sbjct: 1170 IEWLCLRMELLSTLVFAFCMVLLVSFPHGTIDPSMAGLAVTYGLNLNGRLSRWILSFCKL 1229
Query: 1210 ENKIISVERIFQYTCXXXXXXXXXXXXXXNHSWPSHGKIDLRDLQVRYAPHMPFVLRGIS 1269
ENKIIS+ERI+QY+ SWP+ G I+L D++VRYA ++P VL G+S
Sbjct: 1230 ENKIISIERIYQYSQIVGEAPAIIEDFRPPSSWPATGTIELVDVKVRYAENLPTVLHGVS 1289
Query: 1270 CTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIP 1329
C FPG KK GIVGRTGSGKSTLIQ LFR++EP A R+RL IIP
Sbjct: 1290 CVFPGGKKIGIVGRTGSGKSTLIQALFRLIEPTAGKITIDNIDISQIGLHDLRSRLGIIP 1349
Query: 1330 QDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQ 1389
QDP +FEGT+R+N+DPLEE++D++IWEALDK QLGD VR K+ KLDS V ENG+NWS+GQ
Sbjct: 1350 QDPTLFEGTIRANLDPLEEHSDDKIWEALDKSQLGDVVRGKDLKLDSPVLENGDNWSVGQ 1409
Query: 1390 RQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDS 1449
RQLV LGR LLK+ KIL+LDEATASVDTATDNLIQ+ +R F DCTV TIAHRI +VIDS
Sbjct: 1410 RQLVSLGRALLKQAKILVLDEATASVDTATDNLIQKIIRTEFEDCTVCTIAHRIPTVIDS 1469
Query: 1450 DMVLLLSHGLIEEYDSPRKLLENKSSSFSQLVAEYTQRSS 1489
D+VL+LS G + E+D+P +LLE+KSS F +LV EY+ RS+
Sbjct: 1470 DLVLVLSDGRVAEFDTPARLLEDKSSMFLKLVTEYSSRST 1509
|
|
| TAIR|locus:2043268 ABCC4 "ATP-binding cassette C4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2679 (948.1 bits), Expect = 9.5e-279, P = 9.5e-279
Identities = 564/1371 (41%), Positives = 833/1371 (60%)
Query: 129 PMLLKIWW-GFYVFISCYCLIVDIVLYQKQVNLPIQYLVSDVVSVITGLFPCFVGFMSKI 187
P+ L+I+W +V S + + I + ++ DV S + F+ ++ +
Sbjct: 165 PLSLRIYWISSFVLTSLFA-VTGIFHFLSDAATSLR--AEDVASFFSFPLTAFL-LIASV 220
Query: 188 EGEDTLILQEPLLKVDSGESEGTVASIKSRGADTVTPYSNAGLFSVLTYTWINSLIALGN 247
G L+ E +S S++ +D V+ Y++A +FS + W+N L++ G
Sbjct: 221 RGITGLVTAE----TNSPTKPSDAVSVEK--SDNVSLYASASVFSKTFWLWMNPLLSKGY 274
Query: 248 KKTLDLEDVPQLDSGNSVVGVFATFKNKLETEAGLGSGLTTLKLIKAMFRSVWKDVLLTA 307
K L LE VP L + + F++ + S L+ R WK++L TA
Sbjct: 275 KSPLTLEQVPTLSPEHKAERLALLFESSWPKPSENSSHPIRTTLL----RCFWKEILFTA 330
Query: 308 LVAIVCTLATYVGPYLIDTLVQYLSGKRDFENEGYALVSAFCVAKLVECLCQRFFVFRLE 367
++AIV YVGP LI + V + SGKR +GY LV VAK VE L F F +
Sbjct: 331 ILAIVRLGVMYVGPVLIQSFVDFTSGKRSSPWQGYYLVLILLVAKFVEVLTTHQFNFDSQ 390
Query: 368 QLGIRLRAALIAMIYNKGLKLSSQAKQGNTSGEIINFMTVDAERVAELSWYIHDPWLFLF 427
+LG+ +R+ LI +Y KGLKL+ A+Q + G+I+N+M VDA++++++ +H WL
Sbjct: 391 KLGMLIRSTLITALYKKGLKLTGSARQNHGVGQIVNYMAVDAQQLSDMMLQLHAIWLMPL 450
Query: 428 EVALSFLILYKSLGIASVAAFFG-TVIFMLVNVPLSTVQEK-FQNELMKSKDERMKATSE 485
+V ++ ++LY SLG + + A G T +F+ + L T + +Q LM ++D RMKAT+E
Sbjct: 451 QVTVALVLLYGSLGASVITAVIGLTGVFVFIL--LGTQRNNGYQFSLMGNRDSRMKATNE 508
Query: 486 ILRNMRILKLQGWELKFLSKTIDLRKSESGWLKRCLYTSSITSFVFWCAPTFVSVITFGT 545
+L MR++K Q WE F + + R E GWL + LY+ + V W P +S +TF T
Sbjct: 509 MLNYMRVIKFQAWENHFNKRILKFRDMEFGWLSKFLYSIAGNIIVLWSTPVLISALTFAT 568
Query: 546 CILLKVPLESGKVLSAIATFRLLQILIYKLP-AIISMTIQTKVSLQRIASFFCLDELQPD 604
+ L V L++G V + F++LQ I P ++IS++ Q +SL R+ S+ EL D
Sbjct: 569 ALALGVKLDAGTVFTTTTIFKILQEPIRTFPQSMISLS-QAMISLGRLDSYMMSKELSED 627
Query: 605 LVEKQPRGSSETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLS 664
VE+ TA+E+ DG+FSWD + P L DIN KV G A+ GTVGSGKSSLL+
Sbjct: 628 AVERALGCDGNTAVEVRDGSFSWDDEDNEPALSDINFKVKKGELTAIVGTVGSGKSSLLA 687
Query: 665 CILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMDRERYNAVLDACSLEKD 724
+LGE+ +ISG +++CG+ YVAQ+ WI++G ++DNILFG M RE+YN VL+ CSLEKD
Sbjct: 688 SVLGEMHRISGQVRVCGSTGYVAQTSWIENGTVQDNILFGLPMVREKYNKVLNVCSLEKD 747
Query: 725 LEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKE 784
L+++ FGD+T +GERGINLSGGQKQRIQ+ARA+YQ+ D+YL DD FSAVDAHTGS +FK+
Sbjct: 748 LQMMEFGDKTEIGERGINLSGGQKQRIQLARAVYQECDVYLLDDVFSAVDAHTGSDIFKK 807
Query: 785 VLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVINSGTDFMELVDAHKQ 844
+ G L KTVL VTHQV+FL D +LV++DGKI ++GKY ++++SG DF ELV AH+
Sbjct: 808 CVRGALKGKTVLLVTHQVDFLHNVDCILVMRDGKIVESGKYDELVSSGLDFGELVAAHET 867
Query: 845 ALSTLDS------IEGRPLSEKGSANGENDGTSATDGXXXXXXXXXXQNDREDKVAEPQR 898
++ +++ + P + S + + TS ++ + E
Sbjct: 868 SMELVEAGADSAAVATSPRTPT-SPHASSPRTSMESPHLSDLNDEHIKSFLGSHIVEDGS 926
Query: 899 QLVQEEEREKGKVEFSVYWKYITAAYGGVLVPFILLAQTLFQILQIASNYWIAWATPASK 958
+L++EEERE G+V VY +Y T AYG + +L +Q +AS+YW+A+ T A
Sbjct: 927 KLIKEEERETGQVSLGVYKQYCTEAYGWWGIVLVLFFSLTWQGSLMASDYWLAYETSAKN 986
Query: 959 DIKPRVTGSMLLIVFVALAFGSSFCILARSTLLATAGYKTATLLFNKMHYCIFRAPMSFF 1018
I S+ ++ +V +A S + RS + G KTA + F ++ I APMSFF
Sbjct: 987 AIS--FDASVFILGYVIIALVSIVLVSIRSYYVTHLGLKTAQIFFRQILNSILHAPMSFF 1044
Query: 1019 DATPSGRIINRASTDQSAVDLSIPALIGSFAFSIIRVLGVIGVMSLVAWQVFIVFIPVIA 1078
D TPSGRI++RASTDQ+ VD+ IP ++G +L + V AW IP+
Sbjct: 1045 DTTPSGRILSRASTDQTNVDILIPFMLGLVVSMYTTLLSIFIVTCQYAWPTAFFVIPLGW 1104
Query: 1079 TCIWYQQYYISSARELSRLVGVCKAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDG 1138
IWY+ YY++S+REL+R+ + KAP+I HF+E+++G TIRSF ++ F N++ ++
Sbjct: 1105 LNIWYRNYYLASSRELTRMDSITKAPIIHHFSESIAGVMTIRSFRKQELFRQENVKRVND 1164
Query: 1139 YSRPTFHVAAAMEWLGFRLDMLSNITFAFSLVFLISIPKGFIDPAIAGLAVTYGLTLNNL 1198
R FH + EWLGFRL+++ + S +F++ +P I P GL+++YGL+LN++
Sbjct: 1165 NLRMDFHNNGSNEWLGFRLELVGSWVLCISALFMVLLPSNVIRPENVGLSLSYGLSLNSV 1224
Query: 1199 QAMLIWLACQMENKIISVERIFQYTCXXXXXXXXXXXXXXNHSWPSHGKIDLRDLQVRYA 1258
I+++C +ENK++SVERI Q+T +WP HG + L DL+VRY
Sbjct: 1225 LFFAIYMSCFVENKMVSVERIKQFTDIPSESEWERKETLPPSNWPFHGNVHLEDLKVRYR 1284
Query: 1259 PHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXX 1318
P+ P VL+GI+ G +K G+VGRTGSGKSTLIQ LFR+VEP+
Sbjct: 1285 PNTPLVLKGITLDIKGGEKVGVVGRTGSGKSTLIQVLFRLVEPSGGKIIIDGIDISTLGL 1344
Query: 1319 XXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKV 1378
R+R IIPQ+PV+FEGTVRSN+DP E+Y+DE+IW++L++CQL D V K KLDS V
Sbjct: 1345 HDLRSRFGIIPQEPVLFEGTVRSNIDPTEQYSDEEIWKSLERCQLKDVVATKPEKLDSLV 1404
Query: 1379 TENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVIT 1438
+NGENWS+GQRQL+CLGRV+LKR ++L LDEATASVD+ TD +IQ+ +R+ F+ CT+I+
Sbjct: 1405 VDNGENWSVGQRQLLCLGRVMLKRSRLLFLDEATASVDSQTDAVIQKIIREDFASCTIIS 1464
Query: 1439 IAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSFSQLVAEYTQRSS 1489
IAHRI +V+D D VL++ G +E+DSP +LLE + S F+ LV EY RS+
Sbjct: 1465 IAHRIPTVMDGDRVLVIDAGKAKEFDSPARLLE-RPSLFAALVQEYALRSA 1514
|
|
| TAIR|locus:2081755 ABCC14 "ATP-binding cassette C14" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1372 (488.0 bits), Expect = 1.9e-278, Sum P(2) = 1.9e-278
Identities = 297/757 (39%), Positives = 448/757 (59%)
Query: 104 VRTLGW--GAIC-VYLRTVFLNLRQ---PKLPMLLKIWWGFYVFISCYCLIVDIVLYQKQ 157
V TL W A+ V + + L+L++ P P+ L+I+W F ++ + I+
Sbjct: 129 VDTLFWLIHAVTNVVIAVLVLHLKRFASPSHPLTLRIYWVFNFVVTTLFTVSGILHLLSD 188
Query: 158 VNLPIQYLVSDVVSVITGLFPCF-VGFMSKIEGEDTLILQEPLLKVDSGESEGTVASIKS 216
DV S I+ FP V + I+G +++ V + V KS
Sbjct: 189 DPAAASLRADDVASFIS--FPLTAVLLLVSIKGSTGVVVTTS--NVTAPAKSNDVVVEKS 244
Query: 217 RGADTVTPYSNAGLFSVLTYTWINSLIALGNKKTLDLEDVPQLDSGNSVVGVFATFKNKL 276
+ V+ Y++A S + W+N L+ G K L+L+ VP L + + F++K
Sbjct: 245 ---ENVSLYASASFISKTFWLWMNPLLRKGYKSPLNLDQVPTLSPEHRAEKLATLFESKW 301
Query: 277 ETEAGLGSGLTTLKLIKAMFRSVWKDVLLTALVAIVCTLATYVGPYLIDTLVQYLSGKRD 336
LI R WK++ TA++AI+ YVGP LI + V + SGKR
Sbjct: 302 PKPQENSRNPVRTTLI----RCFWKEIAFTAVLAIIRLSVIYVGPVLIQSFVDFTSGKRS 357
Query: 337 FENEGYALVSAFCVAKLVECLCQRFFVFRLEQLGIRLRAALIAMIYNKGLKLSSQAKQGN 396
++GY LV +AK VE L F F ++LG+ +R+ LI +Y KGLKL+ A+Q +
Sbjct: 358 SPSQGYYLVLILLIAKFVEVLSTHQFNFNSQKLGMLIRSTLITALYKKGLKLTGSARQNH 417
Query: 397 TSGEIINFMTVDAERVAELSWYIHDPWLFLFEVALSFLILYKSLGIASVAAFFG-TVIFM 455
G+I+N+M VDA++++++ +H WL +VA + ++LY +LG + V G T IF+
Sbjct: 418 GVGQIVNYMAVDAQQLSDMMLQLHAIWLMPLQVAAAIVLLYNTLGPSVVTTVIGLTGIFV 477
Query: 456 LVNVPLSTVQEKFQNELMKSKDERMKATSEILRNMRILKLQGWELKFLSKTIDLRKSESG 515
+ + ++Q LM ++D RMKAT+E+L MR++K Q WE F + + R+ E G
Sbjct: 478 FILLGTKR-NNRYQFSLMMNRDSRMKATNEMLNYMRVIKFQAWEDHFNERILKFREMEFG 536
Query: 516 WLKRCLYTSSITSFVFWCAPTFVSVITFGTCILLKVPLESGKVLSAIATFRLLQILIYKL 575
WL + LY+ + V W P +S +TF T + L V L++G V + F++LQ I
Sbjct: 537 WLSKFLYSIAGNIIVLWSTPVLISALTFTTAVFLGVKLDAGTVFTTTTIFKILQEPIRTF 596
Query: 576 P-AIISMTIQTKVSLQRIASFFCLDELQPDLVEKQPRGSSETAIEIADGNFSWDISSHNP 634
P ++IS++ Q +SL R+ ++ EL + VE+ A+EI DG+FSWD P
Sbjct: 597 PQSMISLS-QAMISLGRLDAYMMSRELSEETVERSQGCDGNVAVEIKDGSFSWDDEDDEP 655
Query: 635 TLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQS 694
+++IN +V G A+ GTVGSGKSSLL+ +LGE+ K+SG +++CGT AYVAQ+ WIQ+
Sbjct: 656 AIENINFEVKKGELAAIVGTVGSGKSSLLASVLGEMHKLSGKVRVCGTTAYVAQTSWIQN 715
Query: 695 GKIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIA 754
G ++DNILFG M+R +YN VL C LEKD++I+ FGDQT +GERGINLSGGQKQRIQ+A
Sbjct: 716 GTVQDNILFGLPMNRSKYNEVLKVCCLEKDMQIMEFGDQTEIGERGINLSGGQKQRIQLA 775
Query: 755 RALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVI 814
RA+YQ++D+YL DD FSAVDAHTGS +FK+ + G L KT+L VTHQV+FL D +LV+
Sbjct: 776 RAVYQESDVYLLDDVFSAVDAHTGSDIFKKCVRGALKGKTILLVTHQVDFLHNVDRILVM 835
Query: 815 KDGKITQAGKYTDVINSGTDFMELVDAHKQALSTLDS 851
+DG I Q+GKY ++++SG DF ELV AH+ ++ +++
Sbjct: 836 RDGMIVQSGKYDELVSSGLDFGELVAAHETSMELVEA 872
|
|
| TAIR|locus:2077750 ABCC10 "ATP-binding cassette C10" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1377 (489.8 bits), Expect = 7.8e-271, Sum P(2) = 7.8e-271
Identities = 306/730 (41%), Positives = 449/730 (61%)
Query: 123 LRQPKLPMLLKIWWGFYVFISCYCLIVDIVLYQKQVNLPIQYLVSDVV----SVITGLFP 178
+R+ L LL I+ FY +S CL V+ ++ + L ++ ++ DV+ SV+ L
Sbjct: 114 IRKSSL-RLLSIFSFFYGLVSS-CLSVNNAVFGDE--LAVRTIL-DVLLLPGSVLL-LLS 167
Query: 179 CFVGFMSKIEGEDTLILQEPLLKVDSGESEGTVASIKSRGADTVTPYSNAGLFSVLTYTW 238
+ G+ GE +L EPL ++G+S G S K+ + V+ ++ AGLFS L++ W
Sbjct: 168 AYKGYRFDESGESSLY--EPL---NAGDSNGF--SEKADFDNRVSQFAKAGLFSTLSFWW 220
Query: 239 INSLIALGNKKTLDLEDVPQLDSGNSVVGVFATFK-NKLETEAGLGSGLTTLKLIKAMFR 297
+NSLI GN K L+ ED+P+L ++ F+ N +E + LGS ++K
Sbjct: 221 LNSLIKRGNVKDLEEEDIPELRKEERAETCYSLFEENLIEQKRRLGSSCQP-SILKVTVL 279
Query: 298 SVWKDVLLTALVAIVCTLATYVGPYLIDTLVQYLSGKRDFENEGYALVSAFCVAKLVECL 357
VW+++L + A + +A GP L++ + G F EG L +K++E L
Sbjct: 280 CVWRELLTSGFFAFMKIVAVSAGPLLLNAFILVAEGNASFRYEGLVLAVLLFFSKMIESL 339
Query: 358 CQRFFVFRLEQLGIRLRAALIAMIYNKGLKLSSQAKQGNTSGEIINFMTVDAERVAELSW 417
QR + FR +G+R+R+ L A I K L+L++ ++ ++ EI+N+ TVDA R+ E +
Sbjct: 340 SQRQWYFRCRIVGLRVRSLLTAAINKKQLRLNNSSRLIHSGSEIMNYATVDAYRIGEFPY 399
Query: 418 YIHDPWLFLFEVALSFLILYKSLGIASVAAFFGTVIFMLVNVPLSTVQEKFQNELMKSKD 477
+ H W F++ ++ IL+ S+G+A+ +A ++ +L N P++ +Q KFQ+ELM S+D
Sbjct: 400 WFHQLWTTSFQLLIALGILFHSVGVATFSALAVIILTVLCNAPIAKLQNKFQSELMTSQD 459
Query: 478 ERMKATSEILRNMRILKLQGWELKFLSKTID-LRKSESGWLKRCLYTSSITSFVFWCAPT 536
ER+KA +E L NM++LKL WE F K I+ LR E LK + + +FW +P
Sbjct: 460 ERLKACNESLVNMKVLKLYAWESHF-KKVIEKLRNIELKSLKAVQMRKAYNAVLFWSSPV 518
Query: 537 FVSVITFGTCILLKVPLESGKVLSAIATFRLLQILIYKLPAIISMTIQTKVSLQRIASFF 596
FVS TF TC L +PL + V + +AT RL+Q + +P +I +TIQ KV+ RIA+F
Sbjct: 519 FVSAATFATCYFLDIPLRASNVFTFVATLRLVQDPVRMIPDVIGVTIQAKVAFSRIATFL 578
Query: 597 CLDELQP-DLVEKQPRGSSETAIEIADGNFSWDIS-SHNPTLKDINLKVFHGMRVAVCGT 654
ELQ + KQ ++ AI I +FSW+ S P L++++L+V G +VAVCG
Sbjct: 579 EAPELQGGERRRKQRSEGNQNAIIIKSASFSWEEKGSTKPNLRNVSLEVKFGEKVAVCGE 638
Query: 655 VGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMDRERYNA 714
VGSGKS+LL+ ILGE P +SGT+ GT AYV+Q+ WIQ+G I DNILFG MD RY
Sbjct: 639 VGSGKSTLLAAILGETPCVSGTIDFYGTIAYVSQTAWIQTGTIRDNILFGGVMDEHRYRE 698
Query: 715 VLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVD 774
+ SL+KDLE+L GDQT +GERG+NLSGGQKQRIQ+ARALYQDADIYL DDPFSAVD
Sbjct: 699 TIQKSSLDKDLELLPDGDQTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVD 758
Query: 775 AHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVINSGTD 834
AHT S LF+E ++ L K VL VTHQV+FLPA D VL++ DG+IT+A Y +++ D
Sbjct: 759 AHTASSLFQEYVMDALAGKAVLLVTHQVDFLPAFDSVLLMSDGEITEADTYQELLARSRD 818
Query: 835 FMELVDAHKQ 844
F +LV+AH++
Sbjct: 819 FQDLVNAHRE 828
|
|
| DICTYBASE|DDB_G0284867 abcC8 "ABC transporter C family protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 1072 (382.4 bits), Expect = 2.7e-218, Sum P(2) = 2.7e-218
Identities = 225/607 (37%), Positives = 356/607 (58%)
Query: 894 AEPQ--RQLVQEEEREKGKVEFSVYWKYITAAYGGVLVPFILLAQTLFQILQIASNYWIA 951
A+PQ +++ E +++GKV F +Y Y A G +L I+ L Q+L I +N+WI+
Sbjct: 974 AKPQDKNKIISVETKQEGKVSFKIYLSYFKAI-GVLLATCIIGFYVLTQLLSILANWWIS 1032
Query: 952 -WATP----------------ASKDIKPRVTGSMLLIVFVALAFGSSFCILARSTLLATA 994
W +S ++ L ++VA + G+ RS +
Sbjct: 1033 IWTNSYGGNGNGSGSGSISLSSSSTVEDNEKAKYYLSIYVAFSCGTIAATFLRSFSMVFG 1092
Query: 995 GYKTATLLFNKMHYCIFRAPMSFFDATPSGRIINRASTDQSAVDLSIPALIGSFAFSIIR 1054
K + L KM + +PMSFFD TP GRI+NR S DQ +D SI +G F + +
Sbjct: 1093 SIKGSKLFHEKMFKAVILSPMSFFDTTPIGRILNRFSKDQLTIDESIARTLGMFLNTFCQ 1152
Query: 1055 VLGVIGVMSLVAWQVFIVFIPVIATCIWYQQYYISSARELSRLVGVCKAPLIQHFAETVS 1114
V+G I V++ V+ + + +PV A + Q+YY++S+REL+RL GV ++P+ HF+ET++
Sbjct: 1153 VVGSIIVIAWVSPFIILAMVPVGALFYFIQKYYLNSSRELTRLEGVSRSPIYAHFSETLA 1212
Query: 1115 GSTTIRSFDQESRFIDTNMELMDGYSRPTFHVAAAMEWLGFRLDMLSNITFAFSLVFLIS 1174
G TTIR+F +RF+ N L+D + + ++ WL RL+ L + ++++ +
Sbjct: 1213 GVTTIRAFKDVARFVTENERLLDENQKCYYINISSNRWLAIRLEFLGACLVSCAVLYTV- 1271
Query: 1175 IPKGFIDPAIAGLAVTYGLTLNNLQAMLIWLACQMENKIISVERIFQYTCXXXXXXXXXX 1234
+ + I+ AGL +TY L + ++ ++C +EN ++S+ERI +Y C
Sbjct: 1272 LARSRIEAGTAGLVITYALAITGNMNWMVRMSCDLENSVVSIERIQEY-CLLPSEAPLFN 1330
Query: 1235 XXXXNHSWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQT 1294
SWPSHGKI ++L + Y + VLRGI+CT + K GIVGRTG+GKS+L Q
Sbjct: 1331 DKSVPMSWPSHGKIVFKNLWLTYREGLDPVLRGINCTIEPKTKVGIVGRTGAGKSSLTQA 1390
Query: 1295 LFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQI 1354
LFR+VEP R+R++IIPQDPV+F G+VR N+DP ++Y D +I
Sbjct: 1391 LFRLVEPLRGTIEIDGIDITELGLNPLRSRMAIIPQDPVLFAGSVRYNLDPFDQYDDHEI 1450
Query: 1355 WEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATAS 1414
WEA++ L ++ +G LD+ V + G+N+S+GQRQL+ +GR LLK+ I++LDEA++S
Sbjct: 1451 WEAIENAHLLKAIKDLDGGLDAMVQDGGDNFSVGQRQLLVIGRALLKKANIIVLDEASSS 1510
Query: 1415 VDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKS 1474
+D A+D LIQ+++R F+DCTV+TIAHR+ ++ DSD +++L G + EYDSP +LL+N+
Sbjct: 1511 IDIASDALIQETIRTKFADCTVLTIAHRLGTIADSDKIMVLDKGELIEYDSPSELLKNQD 1570
Query: 1475 SSFSQLV 1481
S + LV
Sbjct: 1571 SIYYSLV 1577
|
|
| UNIPROTKB|Q5F364 ABCC1 "Multidrug resistance-associated protein 1" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1036 (369.7 bits), Expect = 8.2e-210, Sum P(3) = 8.2e-210
Identities = 237/713 (33%), Positives = 385/713 (53%)
Query: 788 GLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVINSGTDFMELVDAHKQALS 847
G+L +KT + VTH V +LP D +LV+ DG+I++ G Y +++ F E + + A
Sbjct: 812 GILKNKTRVLVTHAVNYLPQMDTILVMTDGEISEMGSYQELLKQDGAFAEFLRTYANAEQ 871
Query: 848 TLDSIEGR-PLSEKGSA--NGE--NDGTSATD----GXXXXXXXXXXQNDREDKVAEPQR 898
+++S + P ++G NG ND T ++ + AE Q+
Sbjct: 872 SMESSDASSPSGKEGKPVENGVLVNDATGKLMHRQLSNSSTYSRETGKSQHQSSTAELQK 931
Query: 899 QLVQ-------EEEREK-GKVEFSVYWKYITAAYGGVLVPFILLAQTLFQ---ILQIASN 947
L + E + K G+V+ +VYW+Y+ A G+ + F L+ LF I +ASN
Sbjct: 932 PLAEKNSWKLTEADTAKTGRVKATVYWEYMKAI--GLYISF--LSVFLFMCNHIASLASN 987
Query: 948 YWIA-WATPASKDIKPRVTGSMLLIVFVALAFGSSFCILARSTLLATAGYKTATLLFNKM 1006
YW++ W + + T ++ L V+ AL + S ++ G + L +
Sbjct: 988 YWLSLWTDDPVVNGTQQYT-NVRLGVYGALGISQGIAVFGYSMAVSIGGIFASRHLHLDL 1046
Query: 1007 HYCIFRAPMSFFDATPSGRIINRASTDQSAVDLSIPALIGSFAFSIIRVLGVIGVMSLVA 1066
+ + R+PMSFF+ TPSG +++R S + +D +IP +I F S V+G ++ L+A
Sbjct: 1047 LHNVLRSPMSFFERTPSGNLVSRFSKEIDTIDSTIPPIIKMFMGSTFNVIGAC-IIILLA 1105
Query: 1067 WQVFIVFIPVIATC-IWYQQYYISSARELSRLVGVCKAPLIQHFAETVSGSTTIRSFDQE 1125
+ V IP + + Q++Y++++R+L RL V ++P+ HF ET+ G + IR+F+++
Sbjct: 1106 TPIAAVVIPPLGLVYLLVQRFYVATSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQ 1165
Query: 1126 SRFIDTNMELMDGYSRPTFHVAAAMEWLGFRLDMLSNITFAFSLVFLISIPKGFIDPAIA 1185
RFI N +D + + A WL RL+ + N F+ +F + I + + P +
Sbjct: 1166 KRFIKQNDMKVDENQKAYYPSIVANRWLAVRLEFVGNCIVLFAALFAV-IARNKLSPGLI 1224
Query: 1186 GLAVTYGLTLNNLQAMLIWLACQMENKIISVERIFQYTCXXXXXXXXXXXXXXNHSWPSH 1245
GL+V+Y L + L+ + +E I++VER+ +Y +WP
Sbjct: 1225 GLSVSYSLQITAYLNWLVRMTSDLETNIVAVERVKEYAEMEKEAEWSIEETAPASTWPQE 1284
Query: 1246 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXX 1305
GK++ R +RY + VL+ I+ T G +K GIVGRTG+GKS+L LFRI E A
Sbjct: 1285 GKVEFRGFGLRYREDLDLVLKNINITINGGEKVGIVGRTGAGKSSLTLGLFRINEAAEGE 1344
Query: 1306 XXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGD 1365
R +++IIPQDP++F G++R N+DP ++++DE IW +L+ L +
Sbjct: 1345 IIIDGINIAKIGLHDLRFKITIIPQDPILFSGSLRMNLDPFDQHSDEDIWRSLELAHLKN 1404
Query: 1366 EVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQ 1425
V KL+ + +E GEN S+GQRQLVCL R LL++ KIL+LDEATA+VD TDNLIQ
Sbjct: 1405 FVSSLPDKLNHECSEGGENLSVGQRQLVCLARALLRKSKILVLDEATAAVDLETDNLIQS 1464
Query: 1426 SLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSFS 1478
+++ F +CTV+TIAHR+ +++D VL+L G + E DSP LL+ K +S
Sbjct: 1465 TIKSQFEECTVLTIAHRLNTIMDYTRVLVLDRGEVVECDSPDNLLQAKGLFYS 1517
|
|
| FB|FBgn0032456 MRP "Multidrug-Resistance like Protein 1" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1021 (364.5 bits), Expect = 5.0e-206, Sum P(3) = 5.0e-206
Identities = 227/619 (36%), Positives = 361/619 (58%)
Query: 233 VLTYTWINSLIALGNKKTLDLEDVPQLDSGNSVVGVFATFKNKLETEAGLGSGLTTLKLI 292
+ + W N + K +E Q +GN TF+N + G G+ ++ +
Sbjct: 272 IFAHHW-NQNVRKNYKNKARVEPKAQFSNGN------VTFENPHGEKNGRKKGMASI--M 322
Query: 293 KAMFRSVWKDVLLTALVAIVCTLATYVGPYLIDTLVQYLSGKRDFENEGYALVSA---FC 349
+++S L AL+ + T+ P ++ ++ ++ + D E E ++ A F
Sbjct: 323 PPIYKSFGGVFLFGALMKLFTDTLTFAQPQVLSLIISFVEAQ-DAEPEWKGILYAVLLFV 381
Query: 350 VAKLVECLCQRFFVFRLEQLGIRLRAALIAMIYNKGLKLSSQAKQGNTSGEIINFMTVDA 409
+A + ++F R+ +G+R+R ALI IY K L++S+ K+ +T GEI+N M VDA
Sbjct: 382 LAAAQTFILGQYF-HRMFIVGLRIRTALINAIYRKALRISNSTKKESTVGEIVNLMAVDA 440
Query: 410 ERVAELSWYIHDPWLFLFEVALSFLILYKSLGIASVAAFFGTVIFMLVNVPLSTVQEKFQ 469
+R EL+ Y++ W ++ L+ L++ LG + +A +I + VN +++ + +Q
Sbjct: 441 QRFMELTTYLNMIWSAPLQIGLALYFLWQQLGPSVLAGLAVMIILIPVNGVIASRIKTYQ 500
Query: 470 NELMKSKDERMKATSEILRNMRILKLQGWELKFLSKTIDLRKSESGWLKRCLYTSSITSF 529
MK KDER+K +E+L +++LKL WE F + +D+R E L+ Y ++ TSF
Sbjct: 501 IRQMKYKDERVKLMNEVLSGIKVLKLYAWEPSFEKQVLDIRDKEIATLRSTAYLNAGTSF 560
Query: 530 VFWCAPTFVSVITFGTCILLKVP--LESGKVLSAIATFRLLQILIYKLPAIISMTIQTKV 587
++ CAP VS++TF T +L+ L++ K +++ F +L+ + LP +I+ +QT+V
Sbjct: 561 LWSCAPFLVSLVTFATYVLIDENNVLDATKTFVSLSLFNILRFPLTMLPMLITNLVQTQV 620
Query: 588 SLQRIASFFCLDELQPDLVEKQPRGSSETAIEIADGNFSWDISSHNPTLKDINLKVFHGM 647
S+ RI F +EL P+ V S + I +G FSW TL++IN++V G
Sbjct: 621 SVNRINKFLNSEELDPNSVLHD--SSKPHPMSIENGEFSW---GDEITLRNINIEVKKGS 675
Query: 648 RVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEM 707
VA+ GTVGSGKSS++ LGE+ K++G + G AYV Q WIQ+ + DNILFG+
Sbjct: 676 LVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTVGKLAYVPQQAWIQNATVRDNILFGQTY 735
Query: 708 DRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFD 767
DR+RYN V+DAC+L D++ILS GD T +GE+GINLSGGQKQRI +ARA+Y DAD+YL D
Sbjct: 736 DRKRYNKVIDACALRADIDILSAGDLTEIGEKGINLSGGQKQRISLARAVYSDADLYLLD 795
Query: 768 DPFSAVDAHTGSHLFKEVL--LGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKY 825
DP SAVDAH G H+F+EV+ G+L K+ + VTH V FLP D + VIK G+I+++G +
Sbjct: 796 DPLSAVDAHVGKHIFEEVIGPKGILARKSRVLVTHGVTFLPQVDSIYVIKMGEISESGTF 855
Query: 826 TDVINSGTDFMELVDAHKQ 844
++ + F + + H Q
Sbjct: 856 DQLVKNKGAFADFIIQHLQ 874
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q6UR05 | MRP1_CANFA | No assigned EC number | 0.3426 | 0.8307 | 0.8112 | yes | no |
| P39109 | YCFI_YEAST | No assigned EC number | 0.3381 | 0.8321 | 0.8211 | yes | no |
| Q10185 | ABC2_SCHPO | 3, ., 6, ., 3, ., - | 0.3470 | 0.8367 | 0.8464 | yes | no |
| Q9LK64 | AB3C_ARATH | 3, ., 6, ., 3, ., 4, 4 | 0.6635 | 0.9879 | 0.9755 | yes | no |
| Q28689 | MRP2_RABIT | No assigned EC number | 0.3482 | 0.8454 | 0.8081 | yes | no |
| O35379 | MRP1_MOUSE | No assigned EC number | 0.3471 | 0.8287 | 0.8108 | yes | no |
| Q54JR2 | ABCC3_DICDI | No assigned EC number | 0.3410 | 0.8267 | 0.8753 | yes | no |
| Q63120 | MRP2_RAT | No assigned EC number | 0.3528 | 0.8321 | 0.8072 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.6.3 | 0.976 |
| 3rd Layer | 3.6.3.44 | 0.991 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1495 | |||
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 0.0 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 0.0 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 0.0 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 1e-161 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 1e-119 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 1e-104 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 2e-94 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 2e-91 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 4e-75 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 2e-74 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 1e-70 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 2e-68 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 9e-61 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 2e-60 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 2e-58 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 3e-58 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 5e-57 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 1e-56 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 7e-55 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 3e-54 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 5e-54 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 2e-53 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 7e-49 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 7e-49 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 7e-45 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 3e-44 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 2e-43 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 1e-42 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 2e-42 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 4e-42 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 4e-42 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 1e-41 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 6e-41 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 7e-41 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 1e-40 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 6e-40 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 2e-39 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 6e-39 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 4e-37 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 2e-36 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 2e-36 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 1e-35 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 1e-34 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 4e-34 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 9e-34 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 3e-33 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 5e-33 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 7e-33 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 1e-32 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 2e-32 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 2e-32 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 2e-32 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 3e-32 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 1e-31 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 2e-31 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 4e-31 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 6e-31 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 3e-30 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 4e-30 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 7e-29 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 7e-29 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 8e-29 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 2e-28 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 2e-28 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 6e-28 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 1e-27 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 4e-27 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 9e-27 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 1e-26 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 2e-26 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 2e-26 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 3e-26 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 4e-26 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 5e-26 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 7e-26 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 8e-26 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 1e-25 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 2e-25 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 2e-25 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 3e-25 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 5e-25 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 6e-25 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 7e-25 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 8e-25 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 1e-24 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 1e-24 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 2e-24 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 4e-24 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 7e-24 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 9e-24 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 1e-23 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 2e-23 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 2e-23 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 2e-23 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 2e-23 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 3e-23 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 3e-23 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 4e-23 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 4e-23 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 7e-23 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 7e-23 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 8e-23 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 9e-23 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 1e-22 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 1e-22 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 1e-22 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 2e-22 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 2e-22 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 3e-22 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 4e-22 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 4e-22 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 5e-22 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 5e-22 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 7e-22 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 1e-21 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 1e-21 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 2e-21 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 2e-21 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 3e-21 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 3e-21 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 4e-21 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 5e-21 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 5e-21 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 5e-21 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 6e-21 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 6e-21 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 8e-21 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 1e-20 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 2e-20 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 3e-20 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 3e-20 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 5e-20 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 5e-20 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 6e-20 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 9e-20 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 1e-19 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 2e-19 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 3e-19 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 3e-19 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 5e-19 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 9e-19 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 1e-18 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 1e-18 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 2e-18 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 2e-18 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 2e-18 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 2e-18 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 3e-18 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 3e-18 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 3e-18 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 4e-18 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 4e-18 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 5e-18 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 5e-18 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 5e-18 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 5e-18 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 6e-18 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 8e-18 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 9e-18 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 9e-18 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 9e-18 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 1e-17 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 1e-17 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 1e-17 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 1e-17 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 1e-17 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 2e-17 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 3e-17 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 3e-17 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 4e-17 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 4e-17 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 5e-17 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 5e-17 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 6e-17 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 6e-17 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 7e-17 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 7e-17 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 7e-17 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 8e-17 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 9e-17 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 9e-17 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 1e-16 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 1e-16 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 1e-16 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 1e-16 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 1e-16 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 2e-16 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 2e-16 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 2e-16 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 3e-16 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 4e-16 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 4e-16 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 5e-16 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 5e-16 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 6e-16 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 6e-16 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 8e-16 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 1e-15 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 1e-15 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 1e-15 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 1e-15 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 1e-15 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 1e-15 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 1e-15 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 1e-15 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 1e-15 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 1e-15 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 1e-15 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-15 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 2e-15 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 2e-15 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 2e-15 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 2e-15 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 2e-15 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 3e-15 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 3e-15 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 4e-15 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 4e-15 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 4e-15 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 5e-15 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 5e-15 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 5e-15 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 5e-15 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 6e-15 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 6e-15 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 6e-15 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 7e-15 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 7e-15 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 8e-15 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 9e-15 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 1e-14 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 1e-14 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 2e-14 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 2e-14 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 2e-14 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 2e-14 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 2e-14 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 2e-14 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 2e-14 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 2e-14 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 3e-14 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 3e-14 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 3e-14 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 3e-14 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 4e-14 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 4e-14 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 5e-14 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 6e-14 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 7e-14 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 7e-14 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 8e-14 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 8e-14 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 9e-14 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 1e-13 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 1e-13 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 1e-13 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 1e-13 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 2e-13 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 2e-13 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 2e-13 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 2e-13 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 2e-13 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 2e-13 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 3e-13 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 3e-13 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 3e-13 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 3e-13 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 3e-13 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 3e-13 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 3e-13 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 4e-13 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 4e-13 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 4e-13 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 4e-13 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 4e-13 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 5e-13 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 5e-13 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 5e-13 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 5e-13 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 5e-13 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 5e-13 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 6e-13 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 6e-13 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 7e-13 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 7e-13 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 9e-13 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 9e-13 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 9e-13 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 1e-12 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 1e-12 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 1e-12 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 1e-12 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 1e-12 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 1e-12 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 1e-12 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 2e-12 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 2e-12 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 2e-12 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 2e-12 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 2e-12 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 2e-12 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 2e-12 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 2e-12 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 2e-12 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 2e-12 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 3e-12 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 3e-12 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 3e-12 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 3e-12 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 4e-12 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 4e-12 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 4e-12 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 5e-12 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 7e-12 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 8e-12 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 8e-12 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 8e-12 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 9e-12 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 9e-12 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 9e-12 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 1e-11 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 1e-11 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 1e-11 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 1e-11 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 1e-11 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 1e-11 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 2e-11 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 2e-11 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 2e-11 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 2e-11 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 2e-11 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 2e-11 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 2e-11 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 3e-11 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 3e-11 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 3e-11 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 3e-11 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 3e-11 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 3e-11 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 3e-11 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 3e-11 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 3e-11 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 4e-11 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 4e-11 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 4e-11 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 4e-11 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 4e-11 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 4e-11 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 5e-11 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 5e-11 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 5e-11 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 5e-11 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 6e-11 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 6e-11 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 6e-11 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 7e-11 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 7e-11 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 7e-11 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 7e-11 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 7e-11 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 8e-11 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 9e-11 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 9e-11 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 9e-11 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 9e-11 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 9e-11 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 1e-10 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 1e-10 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 1e-10 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 1e-10 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 1e-10 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 1e-10 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 1e-10 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 2e-10 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 2e-10 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 2e-10 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 2e-10 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 3e-10 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 3e-10 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 3e-10 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 3e-10 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 3e-10 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 3e-10 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 3e-10 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 4e-10 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 4e-10 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 4e-10 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 4e-10 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 4e-10 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 5e-10 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 5e-10 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 5e-10 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 5e-10 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 6e-10 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 6e-10 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 6e-10 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 6e-10 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 7e-10 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 8e-10 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 8e-10 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 9e-10 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 1e-09 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 1e-09 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 1e-09 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 1e-09 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 1e-09 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 1e-09 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 1e-09 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 1e-09 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 1e-09 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 1e-09 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 1e-09 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 1e-09 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 1e-09 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 2e-09 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 2e-09 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 2e-09 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 2e-09 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 2e-09 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 2e-09 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 3e-09 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 3e-09 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 4e-09 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 4e-09 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 5e-09 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 5e-09 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 5e-09 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 5e-09 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 5e-09 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 6e-09 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 6e-09 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 6e-09 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 7e-09 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 8e-09 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 8e-09 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 9e-09 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 9e-09 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 9e-09 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 1e-08 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 1e-08 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 1e-08 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 1e-08 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 1e-08 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 1e-08 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 1e-08 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 1e-08 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 1e-08 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 1e-08 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 1e-08 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 1e-08 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 2e-08 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 2e-08 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 2e-08 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 2e-08 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 2e-08 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 2e-08 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 2e-08 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 2e-08 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 2e-08 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 3e-08 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 3e-08 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 3e-08 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 3e-08 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 3e-08 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 3e-08 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 4e-08 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 4e-08 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 4e-08 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 4e-08 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 5e-08 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 5e-08 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 5e-08 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 5e-08 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 5e-08 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 5e-08 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 6e-08 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 6e-08 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 7e-08 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 7e-08 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 9e-08 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 9e-08 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 9e-08 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 1e-07 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 1e-07 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 1e-07 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 1e-07 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 1e-07 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 1e-07 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 1e-07 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 1e-07 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 1e-07 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 2e-07 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-07 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 2e-07 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 2e-07 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 2e-07 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 2e-07 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 2e-07 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 2e-07 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 3e-07 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 3e-07 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 3e-07 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 3e-07 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 3e-07 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 4e-07 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 4e-07 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 4e-07 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 4e-07 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 4e-07 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 4e-07 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 5e-07 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 5e-07 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 6e-07 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 6e-07 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 6e-07 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 6e-07 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 6e-07 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 6e-07 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 6e-07 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 6e-07 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 7e-07 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 8e-07 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 8e-07 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 8e-07 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 8e-07 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 8e-07 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 9e-07 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 1e-06 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 1e-06 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 1e-06 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 1e-06 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 1e-06 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 1e-06 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 1e-06 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 1e-06 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 1e-06 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 1e-06 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 1e-06 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 2e-06 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 2e-06 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 2e-06 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 2e-06 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 2e-06 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 2e-06 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 2e-06 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 2e-06 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 2e-06 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 3e-06 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 3e-06 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 4e-06 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 4e-06 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 4e-06 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 4e-06 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 5e-06 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 5e-06 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 5e-06 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 6e-06 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 6e-06 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 6e-06 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 7e-06 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 7e-06 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 7e-06 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 7e-06 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 8e-06 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 9e-06 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 1e-05 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 1e-05 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 1e-05 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 1e-05 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 1e-05 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 2e-05 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 2e-05 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 2e-05 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 2e-05 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 2e-05 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 2e-05 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 2e-05 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 2e-05 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 3e-05 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 3e-05 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 3e-05 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 3e-05 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 3e-05 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 4e-05 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 4e-05 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 4e-05 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 4e-05 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 4e-05 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 5e-05 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 5e-05 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 6e-05 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 7e-05 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 9e-05 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 9e-05 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 1e-04 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 1e-04 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 1e-04 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 1e-04 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 2e-04 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 2e-04 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 2e-04 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 3e-04 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 3e-04 | |
| cd03271 | 261 | cd03271, ABC_UvrA_II, ATP-binding cassette domain | 3e-04 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 4e-04 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 4e-04 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 4e-04 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 4e-04 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 4e-04 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 4e-04 | |
| PRK13541 | 195 | PRK13541, PRK13541, cytochrome c biogenesis protei | 4e-04 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 5e-04 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 5e-04 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 5e-04 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 5e-04 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 6e-04 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 6e-04 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 6e-04 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 6e-04 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 6e-04 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 6e-04 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 8e-04 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 9e-04 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 9e-04 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 0.001 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 0.001 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 0.001 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 0.001 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 0.002 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 0.002 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 0.003 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 0.003 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 0.004 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 0.004 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 0.004 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 867 bits (2243), Expect = 0.0
Identities = 450/1304 (34%), Positives = 719/1304 (55%), Gaps = 75/1304 (5%)
Query: 218 GADTVTPYSNAGLFSVLTYTWINSLIALGNKKTLDLEDVPQLDSGNSVVGVFATFKNKLE 277
G + + P +A +FS + + W+ L+ LG K+ L +DV +LD+ + ++ +F+ +
Sbjct: 222 GGEQICPERHANIFSRIFFGWMTPLMQLGYKRPLTEKDVWKLDTWDQTETLYRSFQKCWD 281
Query: 278 TEAGLGSGLTTLK--LIKAMFRSVWKDVLLTALVAIVCTLATYVGPYLIDTLVQYLSGKR 335
E L K L++A+ S+ L I L+ +VGP L++ L++ +
Sbjct: 282 EE------LKKPKPWLLRALNNSLGGRFWLGGFFKIGNDLSQFVGPLLLNLLLESMQ-NG 334
Query: 336 DFENEGYALVSAFCVAKLVECLCQRFFVFRLEQLGIRLRAALIAMIYNKGLKLSSQAKQG 395
+ GY + V ++ LC+ + + ++G RLR+ L+A ++ K L+L+ + ++
Sbjct: 335 EPAWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRLTHEGRKK 394
Query: 396 NTSGEIINFMTVDAERVAELSWYIHDPWLFLFEVALSFLILYKSLGIASVAAFFGTVIFM 455
TSG+I N MT DAE + ++ +H W F + ++ ++LY+ LG+AS+ G+++ +
Sbjct: 395 FTSGKITNLMTTDAEALQQICQQLHTLWSAPFRIIIAMVLLYQQLGVASL---IGSLMLV 451
Query: 456 LVNVPLSTV----QEKFQNELMKSKDERMKATSEILRNMRILKLQGWELKFLSKTIDLRK 511
L+ P+ T +K E ++ D+R+ +E+L M +K WE F SK +R
Sbjct: 452 LM-FPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRD 510
Query: 512 SESGWLKRCLYTSSITSFVFWCAPTFVSVITFGTCILLKVPLESGKVLSAIATFRLLQIL 571
E W ++ S+ SF+ P V+V++FG LL L + ++++ F +L+
Sbjct: 511 DELSWFRKAQLLSAFNSFILNSIPVLVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFP 570
Query: 572 IYKLPAIISMTIQTKVSLQRIASFFCLDE--LQPDLVEKQPRGSSETAIEIADGNFSWDI 629
++ LP +I+ + VSL+R+ +E L P+ P AI I +G FSWD
Sbjct: 571 LFMLPNLITQAVNANVSLKRLEELLLAEERVLLPNP----PLEPGLPAISIKNGYFSWDS 626
Query: 630 SSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKIS-GTLKLCGTKAYVAQ 688
+ PTL +INL V G VA+ G+ G GK+SL+S +LGE+P S ++ + GT AYV Q
Sbjct: 627 KAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQ 686
Query: 689 SPWIQSGKIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQK 748
WI + + DNILFG D ERY +D +L+ DL++L GD T +GERG+N+SGGQK
Sbjct: 687 VSWIFNATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQK 746
Query: 749 QRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAA 808
QR+ +ARA+Y ++D+Y+FDDP SA+DAH G +F + + L KT + VT+Q+ FL
Sbjct: 747 QRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQV 806
Query: 809 DLVLVIKDGKITQAGKYTDVINSGTDFMELVDAHKQALSTLDSIEGRPLSEKGSANGEND 868
D ++++ +G I + G Y ++ N+G F +L++ A + +E E G +
Sbjct: 807 DRIILVHEGMIKEEGTYEELSNNGPLFQKLME---NAGKMEEYVE-----ENGEEEDDQT 858
Query: 869 GTSATDGVVKEVENKEVQNDRED-----KVAEPQRQLVQEEEREKGKVEFSVYWKYITAA 923
+ K V N N ++D K E + L+++EERE G V + V +Y A
Sbjct: 859 SS-------KPVANGNANNLKKDSSSKKKSKEGKSVLIKQEERETGVVSWKVLERYKNAL 911
Query: 924 YGGVLVPFILLAQTLFQILQIASNYWIAWATPASKDIKPRVTGSML-LIVFVALAFGSSF 982
G +V + L L ++ +++S+ W++ T P+ G + +++ L+FG
Sbjct: 912 GGAWVVMILFLCYVLTEVFRVSSSTWLSEWTDQGT---PKTHGPLFYNLIYALLSFGQVL 968
Query: 983 CILARSTLLATAGYKTATLLFNKMHYCIFRAPMSFFDATPSGRIINRASTDQSAVDLSIP 1042
L S L + A L + M I RAPMSFF P GRIINR + D +D ++
Sbjct: 969 VTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVA 1028
Query: 1043 ALIGSFAFSIIRVL------GVIGVMSLVAWQVFIVFIPVIATCIWYQQYYISSARELSR 1096
+ F I ++L G++ +SL W + + + ++YQ S+ARE+ R
Sbjct: 1029 VFVNMFLGQIFQLLSTFVLIGIVSTISL--WAIMPLLVLFYGAYLYYQ----STAREVKR 1082
Query: 1097 LVGVCKAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGYSRPTFHVAAAMEWLGFR 1156
L + ++P+ F E ++G +TIR++ R + N MD R T ++ WL R
Sbjct: 1083 LDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLVNMSSNRWLAIR 1142
Query: 1157 LDMLSNITFAFSLVFLI------SIPKGFIDPAIAGLAVTYGLTLNNLQAMLIWLACQME 1210
L+ L + + F + F + GL ++Y L + +L ++ LA E
Sbjct: 1143 LETLGGLMIWLTASFAVMQNGRAENQAAF--ASTMGLLLSYALNITSLLTAVLRLASLAE 1200
Query: 1211 NKIISVERIFQYTCIPSEPPLEIEESRPNHSWPSHGKIDLRDLQVRYAPHMPFVLRGISC 1270
N + +VER+ Y +PSE PL IE +RP WPS G I D+ +RY P +P VL G+S
Sbjct: 1201 NSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSF 1260
Query: 1271 TFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSIIPQ 1330
+K GIVGRTG+GKS+++ LFRIVE G+ILIDG DIS GL DLR L IIPQ
Sbjct: 1261 EISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQ 1320
Query: 1331 DPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQR 1390
PV+F GTVR N+DP E+ D +WE+L++ L D +R+ LD++V+E GEN+S+GQR
Sbjct: 1321 APVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQR 1380
Query: 1391 QLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSD 1450
QL+ L R LL+R KIL+LDEATA+VD TD LIQ+++R+ F CT++ IAHR+ ++ID D
Sbjct: 1381 QLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCD 1440
Query: 1451 MVLLLSHGLIEEYDSPRKLLENKSSSFSQLV-------AEYTQR 1487
+L+L G + E+D+P LL N+ S+FS++V A+Y +
Sbjct: 1441 RILVLDAGRVVEFDTPENLLSNEGSAFSKMVQSTGAANAQYLRS 1484
|
Length = 1622 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 861 bits (2225), Expect = 0.0
Identities = 457/1323 (34%), Positives = 738/1323 (55%), Gaps = 78/1323 (5%)
Query: 224 PYSNAGLFSVLTYTWINSLIALGNKKTLDLEDVPQL---DSGNSVVGVFA---------T 271
P S+A S +T+ WI + G ++ L+ D+ L D+ VV V T
Sbjct: 203 PESSASFLSRITFWWITGMAVYGYRQPLEESDLWSLNKEDTSEMVVPVLVENWKKECKKT 262
Query: 272 FKNKL----------------------ETEAGLGSGLTTLK---LIKAMFRSVWKDVLLT 306
K + E EA + + L K ++++ L++
Sbjct: 263 RKQPVSAVYGKKDPSKPKGSSQLDANEEVEALIVKSPHKPRKPSLFKVLYKTFGPYFLMS 322
Query: 307 ALVAIVCTLATYVGPYLIDTLVQYLSGKRDFENEGYALVSAFCVAKLVECLCQRFFVFRL 366
+ L ++GP ++ L+++++ + +GY V ++ L +
Sbjct: 323 FCFKAIHDLMMFIGPQILSLLIRFVNDPMAPDWQGYFYTGLLFVCACLQTLILHQYFHIC 382
Query: 367 EQLGIRLRAALIAMIYNKGLKLSSQAKQGNTSGEIINFMTVDAERVAELSWYIHDPWLFL 426
G+R++ A++ +Y K L +++ A++ +T GEI+N M+VDA+R +L+ YI+ W
Sbjct: 383 FVSGMRIKTAVMGAVYRKALVITNSARKSSTVGEIVNLMSVDAQRFMDLATYINMIWSAP 442
Query: 427 FEVALSFLILYKSLGIASVAAFFGTVIFMLVNVPLSTV----QEKFQNELMKSKDERMKA 482
+V L+ L+ +LG + +A V M++ VPL+ V + +Q MKSKD R+K
Sbjct: 443 LQVILALYFLWLNLGPSVLAG----VAVMVLMVPLNAVMAMKTKTYQVAHMKSKDNRIKL 498
Query: 483 TSEILRNMRILKLQGWELKFLSKTIDLRKSESGWLKRCLYTSSITSFVFWCAPTFVSVIT 542
+EIL +++LKL WEL FL K +R+ E LK+ Y ++ +F + C P V++IT
Sbjct: 499 MNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAVGTFTWVCTPFLVALIT 558
Query: 543 FGTCILL--KVPLESGKVLSAIATFRLLQILIYKLPAIISMTIQTKVSLQRIASFFCLDE 600
F + + L++ K ++A F +L+ + LP +IS +Q VSL+R+ F +E
Sbjct: 559 FAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEE 618
Query: 601 LQPDLVEKQPRGSSE-TAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGK 659
L+PD +E++ E +I + + F+W PTL I + G VAV G VG GK
Sbjct: 619 LEPDSIERRTIKPGEGNSITVHNATFTW-ARDLPPTLNGITFSIPEGALVAVVGQVGCGK 677
Query: 660 SSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMDRERYNAVLDAC 719
SSLLS +L E+ K+ G + + G+ AYV Q WIQ+ + +NILFGK ++ + Y VL+AC
Sbjct: 678 SSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWIQNDSLRENILFGKALNEKYYQQVLEAC 737
Query: 720 SLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGS 779
+L DLEIL GD+T +GE+G+NLSGGQKQR+ +ARA+Y +ADIYLFDDP SAVDAH G
Sbjct: 738 ALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGK 797
Query: 780 HLFKEVL--LGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVINSGTDFME 837
H+F+ V+ G+L +KT + VTH + +LP D+++V+ GKI++ G Y +++ F E
Sbjct: 798 HIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRDGAFAE 857
Query: 838 LVDAHKQALSTLDSIEGRPLSEKGS---ANGENDGTSATDGVVKEVENK--------EVQ 886
+ + + G A +G TD V K+++ + Q
Sbjct: 858 FLRTYAPDEQQGHLEDSWTALVSGEGKEAKLIENGMLVTDVVGKQLQRQLSASSSDSGDQ 917
Query: 887 NDREDKVAEPQR--------QLVQEEEREKGKVEFSVYWKYITAAYGGVLVPFILLAQTL 938
+ AE Q+ +L++ ++ + G+VE SVYW Y+ A G+ + F+ + +
Sbjct: 918 SRHHGSSAELQKAEAKEETWKLMEADKAQTGQVELSVYWDYMKAI--GLFITFLSIFLFV 975
Query: 939 FQ-ILQIASNYWI-AWATPASKDIKPRVTGSMLLIVFVALAFGSSFCILARSTLLATAGY 996
+ +ASNYW+ W + T S+ L V+ AL F + S ++ G
Sbjct: 976 CNHVSALASNYWLSLWTDDPMVNGTQNNT-SLRLSVYGALGILQGFAVFGYSMAVSIGGI 1034
Query: 997 KTATLLFNKMHYCIFRAPMSFFDATPSGRIINRASTDQSAVDLSIPALIGSFAFSIIRVL 1056
+ + +L + + R+PMSFF+ TPSG ++NR S + VD IP +I F S+ V+
Sbjct: 1035 QASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVI 1094
Query: 1057 GVIGVMSLVAWQVFIVFIPVIATCIWY-QQYYISSARELSRLVGVCKAPLIQHFAETVSG 1115
G + ++ L+A + V IP + ++ Q++Y++S+R+L RL V ++P+ HF ET+ G
Sbjct: 1095 GAL-IVILLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLG 1153
Query: 1116 STTIRSFDQESRFIDTNMELMDGYSRPTFHVAAAMEWLGFRLDMLSNITFAFSLVFLISI 1175
+ IR+F+++ RFI + +D + + A WL RL+ + N F+ +F + I
Sbjct: 1154 VSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVRLECVGNCIVLFAALFAV-I 1212
Query: 1176 PKGFIDPAIAGLAVTYGLTLNNLQAMLIWLACQMENKIISVERIFQYTCIPSEPPLEIEE 1235
+ + + GL+V+Y L + L+ ++ +ME I++VER+ +Y+ E P +I+E
Sbjct: 1213 SRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQE 1272
Query: 1236 SRPNHSWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTL 1295
+ P WP G+++ R+ +RY + VLR I+ T G +K GIVGRTG+GKS+L L
Sbjct: 1273 TAPPSGWPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGL 1332
Query: 1296 FRIVEPAAGQILIDGIDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIW 1355
FRI E A G+I+IDG++I+ IGLHDLR +++IIPQDPV+F G++R N+DP +Y+DE++W
Sbjct: 1333 FRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVW 1392
Query: 1356 EALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASV 1415
AL+ L V KLD + E GEN S+GQRQLVCL R LL++ KIL+LDEATA+V
Sbjct: 1393 WALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAV 1452
Query: 1416 DTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSS 1475
D TDNLIQ ++R F DCTV+TIAHR+ +++D V++L G + E+ +P LL+ +
Sbjct: 1453 DLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQRGI 1512
Query: 1476 SFS 1478
+S
Sbjct: 1513 FYS 1515
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 786 bits (2030), Expect = 0.0
Identities = 441/1295 (34%), Positives = 713/1295 (55%), Gaps = 55/1295 (4%)
Query: 206 ESEGTVASIKSRGADTVTPYSNAGLFSVLTYTWINSLIALGNKKTLDLEDVPQLDSGNSV 265
ES V RG + + P A +FS + ++W+ L+ LG +K + +DV QLD +
Sbjct: 210 ESLDNVEYDALRGGENICPERYASIFSRIYFSWMTPLMQLGYRKPITEKDVWQLDQWDQT 269
Query: 266 VGVFATFKNKLETEAGLGSGLTTLKLIKAMFRSVWKDVLLTALVAIVCTLATYVGPYLID 325
T + + S L++A+ S+ L + I L+ +VGP ++
Sbjct: 270 ----ETLIKRFQRCWTEESRRPKPWLLRALNNSLGGRFWLGGIFKIGHDLSQFVGPVILS 325
Query: 326 TLVQYLSGKRDFENEGYALVSAFCVAKLVECLCQRFFVFRLEQLGIRLRAALIAMIYNKG 385
L+Q + + D GY LC+ + + ++G RLR+ L+A I++K
Sbjct: 326 HLLQSMQ-EGDPAWVGYVYAFLIFFGVTFGVLCESQYFQNVGRVGFRLRSTLVAAIFHKS 384
Query: 386 LKLSSQAKQGNTSGEIINFMTVDAERVAELSWYIHDPWLFLFEVALSFLILYKSLGIASV 445
L+L+ +A++ SG++ N +T DA + +++ +H W F + +S ++LY+ LG+AS+
Sbjct: 385 LRLTHEARKNFASGKVTNMITTDANALQQIAEQLHGLWSAPFRIIVSMVLLYQQLGVASL 444
Query: 446 AAFFGTVIFMLVNVPLSTV----QEKFQNELMKSKDERMKATSEILRNMRILKLQGWELK 501
FG++I L+ +PL T+ K E ++ D+R+ +EIL +M +K WE
Sbjct: 445 ---FGSLILFLL-IPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKS 500
Query: 502 FLSKTIDLRKSESGWLKRCLYTSSITSFVFWCAPTFVSVITFGTCILLKVPLESGKVLSA 561
F S+ +R E W ++ S+ SF+ P V++++FG +LL L + ++
Sbjct: 501 FESRIQGIRNEELSWFRKAQLLSAFNSFILNSIPVVVTLVSFGVFVLLGGDLTPARAFTS 560
Query: 562 IATFRLLQILIYKLPAIISMTIQTKVSLQRIASFFCLDELQPDLVEKQPRGSSETAIEIA 621
++ F +L+ + LP ++S + VSLQRI +E L + P AI I
Sbjct: 561 LSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERI--LAQNPPLQPGAPAISIK 618
Query: 622 DGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGT-LKLC 680
+G FSWD + PTL DINL++ G VA+ G G GK+SL+S +LGE+ + + +
Sbjct: 619 NGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIR 678
Query: 681 GTKAYVAQSPWIQSGKIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERG 740
G+ AYV Q WI + + +NILFG + + ERY +D +L+ DL++L D T +GERG
Sbjct: 679 GSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERG 738
Query: 741 INLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTH 800
+N+SGGQKQR+ +ARA+Y ++DIY+FDDP SA+DAH +F + L KT + VT+
Sbjct: 739 VNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTN 798
Query: 801 QVEFLPAADLVLVIKDGKITQAGKYTDVINSGTDFMELVD-AHKQALSTLDSIEGRPLSE 859
Q+ FLP D ++++ +G I + G + ++ SG+ F +L++ A K + + + +
Sbjct: 799 QLHFLPLMDRIILVSEGMIKEEGTFAELSKSGSLFKKLMENAGKMDATQEVNTNDENILK 858
Query: 860 KGSANGENDGTSATDGVVKEVENKEVQNDREDKVAEPQRQLVQEEEREKGKVEFSVYWKY 919
G V +V + + + ++ K + LV++EERE G + ++V +Y
Sbjct: 859 LGPT------------VTIDVSERNLGSTKQGK--RGRSVLVKQEERETGIISWNVLMRY 904
Query: 920 ITAAYGGVLVPFILLAQTLF-QILQIASNYWIAWATPAS--KDIKPRVTGSMLLIVFVAL 976
A GG+ V ILL L ++L+++S+ W++ T S K P ++V+ L
Sbjct: 905 -NKAVGGLWVVMILLVCYLTTEVLRVSSSTWLSIWTDQSTPKSYSP----GFYIVVYALL 959
Query: 977 AFGSSFCILARSTLLATAGYKTATLLFNKMHYCIFRAPMSFFDATPSGRIINRASTDQSA 1036
FG S L ++ A L + M I RAPM FF P+GR+INR S D
Sbjct: 960 GFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGD 1019
Query: 1037 VDLSIPALIGSF---AFSIIRVLGVIGVMSLVA-WQVFIVFIPVIATCIWYQQYYISSAR 1092
+D ++ L+ F + ++ +IG +S ++ W + + I A ++YQ S++R
Sbjct: 1020 IDRNVANLMNMFMNQLWQLLSTFALIGTVSTISLWAIMPLLILFYAAYLYYQ----STSR 1075
Query: 1093 ELSRLVGVCKAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGYSRPTFHVAAAMEW 1152
E+ RL V ++P+ F E ++G ++IR++ R N + MD R T ++ W
Sbjct: 1076 EVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLANTSSNRW 1135
Query: 1153 LGFRLDMLSNITFAFSLVFLI------SIPKGFIDPAIAGLAVTYGLTLNNLQAMLIWLA 1206
L RL+ L + + F + GF + GL ++Y L + L + ++ A
Sbjct: 1136 LTIRLETLGGVMIWLTATFAVLRNGNAENQAGF--ASTMGLLLSYTLNITTLLSGVLRQA 1193
Query: 1207 CQMENKIISVERIFQYTCIPSEPPLEIEESRPNHSWPSHGKIDLRDLQVRYAPHMPFVLR 1266
+ EN + SVER+ Y +PSE IE +RP WPS G I D+ +RY P +P VL
Sbjct: 1194 SKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPGLPPVLH 1253
Query: 1267 GISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLS 1326
G+S +K G+VGRTG+GKS+++ LFRIVE G+I+ID D++ GL DLR LS
Sbjct: 1254 GLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLS 1313
Query: 1327 IIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWS 1386
IIPQ PV+F GTVR N+DP E+ D +WEAL++ + D + + LD++V+E GEN+S
Sbjct: 1314 IIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFS 1373
Query: 1387 MGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSV 1446
+GQRQL+ L R LL+R KIL+LDEATASVD TD+LIQ+++R+ F CT++ IAHR+ ++
Sbjct: 1374 VGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTI 1433
Query: 1447 IDSDMVLLLSHGLIEEYDSPRKLLENKSSSFSQLV 1481
ID D +L+LS G + EYDSP++LL +S+F ++V
Sbjct: 1434 IDCDKILVLSSGQVLEYDSPQELLSRDTSAFFRMV 1468
|
Length = 1495 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 528 bits (1361), Expect = e-161
Identities = 297/895 (33%), Positives = 455/895 (50%), Gaps = 76/895 (8%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSG 695
L+D+++ V G V G GSGKS+LL +L + G + + AYV Q WI +
Sbjct: 676 LRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNA 735
Query: 696 KIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIAR 755
+ NILF E D R + LE DL L G +T +GE+G+NLSGGQK R+ +AR
Sbjct: 736 TVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLAR 795
Query: 756 ALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIK 815
A+Y + D+YL DDP SA+DAH G + +E LG L KT + THQV +P AD V+ +
Sbjct: 796 AVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALG 855
Query: 816 DGKITQAGKYTDVINSGTDFMELVDAHKQALSTLDSIEGRPLSEKGSANGENDGTSATDG 875
DG++ +G D FM A ++ + + +G A+ E A G
Sbjct: 856 DGRVEFSGSSAD-------FMRTSLYATLAAELKENKDSK----EGDADAEVAEVDAAPG 904
Query: 876 VVKEVENKEVQNDR----EDKVAEP--QRQLVQEEEREKGKVEFSVYWKYITAAYGGVLV 929
+ E + + D A +L+ EE+ G V +S Y Y+ G
Sbjct: 905 GAVDHEPPVAKQEGNAEGGDGAALDAAAGRLMTREEKASGSVPWSTYVAYLRFCGGLHAA 964
Query: 930 PFILLAQTLFQILQIASNYWIA-WATPASKDIKPRVTGSMLLIVFVALAFGSSFCILARS 988
F+L + +++ ++S W++ W+T +++ + L V++ + +F + R
Sbjct: 965 GFVLATFAVTELVTVSSGVWLSMWSTR-----SFKLSAATYLYVYLGIVLLGTFSVPLRF 1019
Query: 989 TLLATAGYKTATLLFNKMHYCIFRAPMSFFDATPSGRIINRASTDQSAVDLSIPA---LI 1045
L A + + + + + R MSFFD TP GRI+NR S D +D ++P +
Sbjct: 1020 FLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYL 1079
Query: 1046 GSFAFSIIRVLGVIGVMSLVAWQVFIVFIPVIATC--IWYQ--QYYISSARELSRLVGVC 1101
FSI + V A Q F++ + C ++Y+ Q+Y S+ RE+ R+ V
Sbjct: 1080 LQCLFSICSSILV-----TSASQPFVLV--ALVPCGYLYYRLMQFYNSANREIRRIKSVA 1132
Query: 1102 KAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGYSRPTFHVAAAMEWLGFRLDMLS 1161
K+P+ E + GS TI ++ + + + +D ++ A WLG R++ LS
Sbjct: 1133 KSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSYLENVANRWLGVRVEFLS 1192
Query: 1162 NI-TFAFSLVFLISIPKGF--IDPAIAGLAVTYGLTLNNLQAMLIWLACQ---MENKIIS 1215
NI +L+ +I + + L++T + A L WL Q +E + S
Sbjct: 1193 NIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTT---ATLNWLVRQVATVEADMNS 1249
Query: 1216 VERIFQYT-CIPSE--PPLE---------------------IEESRPNHSWP---SHGKI 1248
VER+ YT +P E P L+ IE + P + P G +
Sbjct: 1250 VERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSL 1309
Query: 1249 DLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILI 1308
+Q+RY +P VLRG+S +K GIVGRTGSGKSTL+ T R+VE G+I +
Sbjct: 1310 VFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRV 1369
Query: 1309 DGIDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVR 1368
+G +I GL +LR + S+IPQDPV+F+GTVR NVDP E + ++W AL+ L + V
Sbjct: 1370 NGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVA 1429
Query: 1369 KKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRK--ILMLDEATASVDTATDNLIQQS 1426
+ +DS+V E G N+S+GQRQL+C+ R LLK+ ILM DEATA++D A D IQ +
Sbjct: 1430 SESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILM-DEATANIDPALDRQIQAT 1488
Query: 1427 LRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSFSQLV 1481
+ FS TVITIAHR+ +V D ++++ HG + E SPR+L+ N+ S F +V
Sbjct: 1489 VMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMV 1543
|
Length = 1560 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 371 bits (956), Expect = e-119
Identities = 128/221 (57%), Positives = 174/221 (78%)
Query: 1246 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQ 1305
G I+ +++ +RY P++P VL+ IS + +K GIVGRTGSGKS+L+ LFR+VE ++G
Sbjct: 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGS 60
Query: 1306 ILIDGIDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGD 1365
ILIDG+DIS IGLHDLR+R+SIIPQDPV+F GT+RSN+DP EY+DE++W+AL++ L +
Sbjct: 61 ILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKE 120
Query: 1366 EVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQ 1425
V G LD+ V E GEN S+GQRQL+CL R LL++ KIL+LDEATASVD TD LIQ+
Sbjct: 121 FVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQK 180
Query: 1426 SLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSP 1466
++R+ F DCTV+TIAHR+ ++IDSD +L+L G + E+DSP
Sbjct: 181 TIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDSP 221
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 329 bits (847), Expect = e-104
Identities = 120/204 (58%), Positives = 154/204 (75%), Gaps = 3/204 (1%)
Query: 618 IEIADGNFSWDISSH--NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISG 675
I + D +F+WD + TLKDINL+V G VA+ G VGSGKSSLLS +LGE+ K+SG
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60
Query: 676 TLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQTV 735
++ + G+ AYV+Q PWIQ+G I +NILFGK D ERY V+ AC+LE DLEIL GD T
Sbjct: 61 SVSVPGSIAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTE 120
Query: 736 VGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLG-LLNSKT 794
+GE+GINLSGGQKQRI +ARA+Y DADIYL DDP SAVDAH G H+F+ +LG LLN+KT
Sbjct: 121 IGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKT 180
Query: 795 VLYVTHQVEFLPAADLVLVIKDGK 818
+ VTHQ++ LP AD ++V+ +G+
Sbjct: 181 RILVTHQLQLLPHADQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 316 bits (812), Expect = 2e-94
Identities = 155/549 (28%), Positives = 261/549 (47%), Gaps = 10/549 (1%)
Query: 928 LVPFILLAQTLFQILQIASNYWIAWATPASKDIKPRVTGSMLLIVFVALAFGSSFCILAR 987
L+ +L L +L + I A + LL++ + LA +
Sbjct: 15 LLLLAILLLLLSALLSLLLPLLIGRIIDAL--LADLGELLELLLLLLLLALLGGVLRALQ 72
Query: 988 STLLATAGYKTATLLFNKMHYCIFRAPMSFFDATPSGRIINRASTDQSAVDLSIPALIGS 1047
S L + G K L + + R P+SFFD SG +I+R + D AV + ++
Sbjct: 73 SYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVL 132
Query: 1048 FAFSIIRVLGVIGVMSLVAWQVFIVFIPVIATCIWYQQYYISSARELSRLVGVCKAPLIQ 1107
SI+ ++G + ++ ++W++ ++ + ++ +R+LSR V L
Sbjct: 133 VFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSRKLSRRVREALGELNA 192
Query: 1108 HFAETVSGSTTIRSFDQESRFIDTNMELMDGYSRPTFHVAAAMEWLGFRLDMLSNITFAF 1167
E++SG I++F E R + E + R + L + +LS++
Sbjct: 193 RLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSLGTVL 252
Query: 1168 SLVF-LISIPKGFIDPAIAGLAVTYGLTLNNLQAMLIWLACQMENKIISVERIFQYTCIP 1226
L + G + + Y L L L + ++ + ER+F+ +
Sbjct: 253 VLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFE---LL 309
Query: 1227 SEPPLEIEESRPNHSWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGS 1286
E P E P+ + G I+ ++ Y P VL+ IS + +K IVG +GS
Sbjct: 310 DEEP--EVEDPPDPLKDTIGSIEFENVSFSYPGKKP-VLKDISFSIEPGEKVAIVGPSGS 366
Query: 1287 GKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNVDP- 1345
GKSTLI+ L R+ +P +G+ILIDGIDI I L LR R+ I+ QDP++F GT+R N+
Sbjct: 367 GKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALG 426
Query: 1346 LEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKI 1405
+ TDE+I EAL + + D+ V E G N S GQRQ + + R LL+ I
Sbjct: 427 RPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPI 486
Query: 1406 LMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 1465
L+LDEAT+++DT T+ LIQ +L++ T + IAHR++++ ++D +++L +G I E +
Sbjct: 487 LILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGT 546
Query: 1466 PRKLLENKS 1474
+LL
Sbjct: 547 HEELLAKGG 555
|
Length = 567 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 294 bits (754), Expect = 2e-91
Identities = 118/225 (52%), Positives = 161/225 (71%), Gaps = 18/225 (8%)
Query: 1242 WPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEP 1301
WP HG+I++ +L VRYAP +P VL+ +S +K GIVGRTG+GKSTLI LFR +E
Sbjct: 1 WPEHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEA 60
Query: 1302 AAGQILIDGIDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKC 1361
G+I IDGIDIS I L DLR+ L+IIPQDP +F GT+RSN+DP +EY+DE+I+ AL
Sbjct: 61 EEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGAL--- 117
Query: 1362 QLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDN 1421
+V+E G N S GQRQL+CL R LLKR ++L+LDEATAS+D ATD
Sbjct: 118 ---------------RVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDA 162
Query: 1422 LIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSP 1466
LIQ+++R+ F++ T++TIAHR+ ++ID D +L++ G ++EYD P
Sbjct: 163 LIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 275 bits (705), Expect = 4e-75
Identities = 183/682 (26%), Positives = 320/682 (46%), Gaps = 65/682 (9%)
Query: 836 MELVDAHKQALSTLDSIEGRPLSEKGSANGENDGTSATDGVVKEVENKEVQNDREDKVAE 895
+ + S LD I R LS+ + + E + KE D
Sbjct: 799 KSSITQQNELASELD-IYSRRLSKDSVYEISEE--------INEEDLKECFAD------- 842
Query: 896 PQRQLVQEEEREKGKVEFSVYWKYITAAYGGVLVPFILLAQTLFQILQIASNYWIAWATP 955
E E ++ Y +YIT V V L L ++ W+ P
Sbjct: 843 -------ERENVFETTTWNTYLRYITTNRNLVFVLIFCLVIFLAEVAASLLGLWLITDNP 895
Query: 956 A---------SKDIKPRVT-------GSMLLIVFVALAFGSSFCILA--RSTLLATAGYK 997
+ + P V S I ++ + S L R L
Sbjct: 896 SAPNYVDQQHANASSPDVQKPVIITPTSAYYIFYIYVGTADSVLALGFFRGLPLVHTLLT 955
Query: 998 TATLLFNKMHYCIFRAPMSFFDATPSGRIINRASTDQSAVDLSIPALIGSFAFSIIRVLG 1057
+ L +M + + +APM+ + +GRI+NR + D + +D +P + F + VLG
Sbjct: 956 VSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLG 1015
Query: 1058 VIGVMSLVAWQVFIVFIPVIATCIWYQQYYISSARELSRLVGVCKAPLIQHFAETVSGST 1117
I V+S++ +FI IPV I + Y++ ++++L +L ++P+ H ++ G
Sbjct: 1016 AIFVVSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLW 1075
Query: 1118 TIRSFDQESRFIDTNMELMDGYSRPTFHVAAAMEWLGFRLDMLSNITFAFSLVFLISIPK 1177
TIR+F ++S F + ++ ++ F + + W R+D++ F F V I+I
Sbjct: 1076 TIRAFGRQSYFETLFHKALNLHTANWFLYLSTLRWFQMRIDII--FVFFFIAVTFIAIGT 1133
Query: 1178 GFIDPAIAGLAVTYGLTLNNLQAMLIWL---ACQMENKIISVERIFQYTCIPSEPP---- 1230
G+ +T + N+ + L W + ++ + SV R+F++ +P E P
Sbjct: 1134 NQDGEGEVGIILTLAM---NILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRPSG 1190
Query: 1231 ----------LEIEESRPNHSWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGI 1280
L IE WPS G++D++ L +Y VL+ +S + G ++ G+
Sbjct: 1191 GGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGL 1250
Query: 1281 VGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSIIPQDPVMFEGTVR 1340
+GRTGSGKSTL+ L R++ G+I IDG+ + + L R +IPQ +F GT R
Sbjct: 1251 LGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFR 1309
Query: 1341 SNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLL 1400
N+DP E+++DE+IW+ ++ L + + KLD + + G S G +QL+CL R +L
Sbjct: 1310 KNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSIL 1369
Query: 1401 KRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLI 1460
+ KIL+LDE +A +D T +I+++L+Q FS+CTVI HR+ ++++ L++ +
Sbjct: 1370 SKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLECQQFLVIEGSSV 1429
Query: 1461 EEYDSPRKLLENKSSSFSQLVA 1482
++YDS +KLL N++S F Q ++
Sbjct: 1430 KQYDSIQKLL-NETSLFKQAMS 1450
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 247 bits (633), Expect = 2e-74
Identities = 115/236 (48%), Positives = 170/236 (72%)
Query: 1246 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQ 1305
G+I + DL VRY ++ VL+ + +K GI GRTGSGKS+L FR+V+ G+
Sbjct: 18 GEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGK 77
Query: 1306 ILIDGIDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGD 1365
I+IDGIDIS + LH LR+RLSII QDP++F G++R N+DP + TD+++WEAL+ QL +
Sbjct: 78 IVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKN 137
Query: 1366 EVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQ 1425
V+ G LD+ VTE GEN+S+GQRQL CL R +++ IL++DEATAS+D AT+N++Q+
Sbjct: 138 MVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQK 197
Query: 1426 SLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSFSQLV 1481
+ F+D TV+TIAHR+++++D+D+VL+LS G++ E D+P LL + F+ LV
Sbjct: 198 VVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLV 253
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 261 bits (668), Expect = 1e-70
Identities = 179/648 (27%), Positives = 306/648 (47%), Gaps = 45/648 (6%)
Query: 223 TPYSNAGLFSVLTYTWINSLIALGNKKTLDLEDVPQLDSGNSVVGVFATFKNKLETE--A 280
+P A S L + W ++ G ++ L+L D+ Q+ S +S +LE E
Sbjct: 4 SPVEKANFLSKLFFWWTRPILRKGYRQKLELSDIYQIPSFDSA----DNLSERLEREWDR 59
Query: 281 GLGSGLTTLKLIKAMFRSVWKDVLLTALVAIVCTLATYVGPYLIDTLVQYLSGKRDFENE 340
L S KL+ A+ R + + ++ V P L+ ++ E E
Sbjct: 60 ELASAKKNPKLLNALRRCFFWRFVFYGILLYFGEATKAVQPLLLGRIIASYDPFNAPERE 119
Query: 341 -GYALVSAFCVAKLVECLCQRFFVFRLEQLGIRLRAALIAMIYNKGLKLSSQAKQGNTSG 399
Y L C+ +V L +F L LG+++R AL ++IY K LKLSS+ ++G
Sbjct: 120 IAYYLALGLCLLFIVRTLLLHPAIFGLHHLGMQMRIALFSLIYKKTLKLSSRVLDKISTG 179
Query: 400 EIINFMTVDAERVAELSWYIHDPWLFLFEVALSFLILYKSLGIASVAAFFGTVIFMLVNV 459
++++ ++ + + E H W+ +V L ++++ L + ++ L
Sbjct: 180 QLVSLLSNNLNKFDEGLALAHFVWIAPLQVILLMGLIWELLEVNGFCGLGFLILLALFQA 239
Query: 460 PLSTVQEKFQNELMKSKDERMKATSEILRNMRILKLQGWELKFLSKTI-DLRKSESGWLK 518
L ++++ ER+ TSEI+ N++ +K WE + + K I ++R+ E +
Sbjct: 240 CLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWE-EAMEKIIKNIRQDELKLTR 298
Query: 519 RCLYTSSITSFVFWCAPTFVSVITFGTCILLKVPLESGKVLSAIAT-----FRLLQILIY 573
+ Y S F+ + FV ++ ++ L G +L I T L +
Sbjct: 299 KIAYLRYFYSSAFFFSGFFVVFLS-----VVPYALIKGIILRRIFTTISYCIVLRMTVTR 353
Query: 574 KLPAIISMTIQTKVSLQRIASFFCLDELQP------------------------DLVEKQ 609
+ P I + ++ +I F C +E + +L EK
Sbjct: 354 QFPGAIQTWYDSLGAITKIQDFLCKEEYKTLEYNLTTTEVEMVNVTASWDEGIGELFEKI 413
Query: 610 PRGSSETAIEIAD-GNFSWDISSH-NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCIL 667
+ + D G F + S + P LK+I+ K+ G +AV G+ GSGKSSLL I+
Sbjct: 414 KQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIM 473
Query: 668 GEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMDRERYNAVLDACSLEKDLEI 727
GE+ G +K G ++ Q+ WI G I+DNI+FG D RY +V+ AC LE+D+ +
Sbjct: 474 GELEPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIAL 533
Query: 728 LSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLL 787
D+TV+GE GI LSGGQ+ RI +ARA+Y+DAD+YL D PF+ +D T +F+ L
Sbjct: 534 FPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLC 593
Query: 788 GLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVINSGTDF 835
L+++KT + VT ++E L AD +L++ +G G ++++ DF
Sbjct: 594 KLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSELQAKRPDF 641
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 245 bits (627), Expect = 2e-68
Identities = 149/530 (28%), Positives = 240/530 (45%), Gaps = 56/530 (10%)
Query: 969 LLIVFVALAFGSSFCILARSTLLATAGYK----TATLLFNKMHYCIFRAPMSFFDATPSG 1024
L I + A + L R+ L+A G + + F + R P+S+F+ G
Sbjct: 196 LAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRH----LLRLPLSYFEKRSVG 251
Query: 1025 RIINRASTDQSAVDL---SIPALIGSFAFSIIRVLGVIGVMSLVAWQVF---IVFIPVIA 1078
II+R + + SI LI F++I + VM L +W++ + IP+
Sbjct: 252 EIISRVRELEQIREFLTGSILTLIIDLLFALI----FLAVMFLYSWKLTLIVLAAIPLNV 307
Query: 1079 TCIWYQQYYISSARELSRLVGVCKAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDG 1138
Q + R +R + A ET+ G T+++ E RF +
Sbjct: 308 LITLIFQPLL---RRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAK 364
Query: 1139 YSRPTFHVAAAMEWLGFRLDMLSNIT------FAFSLV--------FLISIPKGFIDPAI 1184
F L +L ++ F LV L++ +
Sbjct: 365 QVNIGFKTEKLALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFN------ML 418
Query: 1185 AGLAVTYGLTLNNLQAMLIWLACQMENKIISVERIFQYTCIPSEPPLEIEESRPNHSWPS 1244
AG ++ L+ L + +++ER+ I PP + + H
Sbjct: 419 AGYFISPITRLSQLWT-------DFQQAKVALERLGD---ILDTPPEQEGDKTLIHLPKL 468
Query: 1245 HGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAG 1304
G+I+ ++ RY P P VL +S P +K IVGR+GSGKSTL++ L + +P G
Sbjct: 469 QGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQG 528
Query: 1305 QILIDGIDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNV---DPLEEYTDEQIWEALDKC 1361
+IL+DG+D++ I L LR ++ + QDP +F G++R N+ +P E TDE+I EA
Sbjct: 529 RILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNP--EATDEEIIEAAQLA 586
Query: 1362 QLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDN 1421
+ + D+ V E G N S GQRQ + L R LL + KIL+LDEAT+++D T+
Sbjct: 587 GAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEA 646
Query: 1422 LIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLE 1471
+I Q+L Q TVI IAHR++++ +D +++L G I E S +LL
Sbjct: 647 IILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLA 696
|
Length = 709 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 207 bits (529), Expect = 9e-61
Identities = 88/229 (38%), Positives = 135/229 (58%), Gaps = 2/229 (0%)
Query: 1246 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQ 1305
G+I+ ++ Y P VL+ I+ + + IVG TG+GK+TLI L R +P GQ
Sbjct: 1 GEIEFENVNFSYDEKKP-VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQ 59
Query: 1306 ILIDGIDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLG 1364
ILIDGIDI I LR+ + ++ QD +F GT+ N+ TDE++ EA +
Sbjct: 60 ILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAH 119
Query: 1365 DEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQ 1424
D + K D+ + ENG N S G+RQL+ + R +L+ KIL+LDEAT+++DT T+ LIQ
Sbjct: 120 DFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQ 179
Query: 1425 QSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENK 1473
++L + T I IAHR++++ ++D +L+L G I E + +LL K
Sbjct: 180 EALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAKK 228
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 206 bits (525), Expect = 2e-60
Identities = 96/219 (43%), Positives = 139/219 (63%), Gaps = 21/219 (9%)
Query: 618 IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTL 677
+++ +G FSW S TL +IN+++ G + G VG GKSSLL ILGE+ + G +
Sbjct: 1 VQVTNGYFSW--GSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKV 58
Query: 678 KLC-----------------GTKAYVAQSPWIQSGKIEDNILFGKEMDRERYNAVLDACS 720
+ AY AQ PW+ + +E+NI FG +++RY AV DACS
Sbjct: 59 HWSNKNESEPSFEATRSRNRYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACS 118
Query: 721 LEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSH 780
L+ D+++L FGDQT +GERGINLSGGQ+QRI +ARALYQ+ +I DDPFSA+D H H
Sbjct: 119 LQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDH 178
Query: 781 LFKEVLLGLL--NSKTVLYVTHQVEFLPAADLVLVIKDG 817
L +E +L L + +T++ VTH++++LP AD ++ +KDG
Sbjct: 179 LMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 213 bits (543), Expect = 2e-58
Identities = 155/514 (30%), Positives = 254/514 (49%), Gaps = 54/514 (10%)
Query: 990 LLATAGYKTATLLFNKMHYCI------------FRAPMSFFDATPSGRIINRASTDQSAV 1037
LLA + +LLFN+ + R P+S FD P G++I+R + D +
Sbjct: 76 LLAAGLHYAQSLLFNRAAVGVVQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVI 135
Query: 1038 -DLSIPALIGSFAFSIIRVLGVIGVMSLVA-----WQ---VFIVFIPVIATCIW-YQQYY 1087
DL + + +++R +IG M LVA W+ V I+ P + + YQ+Y
Sbjct: 136 RDLYV-----TVVATVLRSAALIGAM-LVAMFSLDWRMALVAIMIFPAVLVVMVIYQRYS 189
Query: 1088 ISSARELSRLVGVCKAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGYSRPTFHVA 1147
R + + A + F E ++G + I+ F Q++RF E M SR H
Sbjct: 190 TPIVRRVRAYL----ADINDGFNEVINGMSVIQQFRQQARF----GERMGEASRS--HYM 239
Query: 1148 AAMEWL---GFRLDMLSNITFAFSLVFLISIPKGFIDPAIAGLAVTYGLT--LNNLQAML 1202
A M+ L GF L L ++ A L L+ + GF + V Y L L L
Sbjct: 240 ARMQTLRLDGFLLRPLLSLFSALILCGLL-MLFGFSASGTIEVGVLYAFISYLGRLNEPL 298
Query: 1203 IWLACQ---MENKIISVERIFQYTCIPSEPPLEIEESRPNHSWPSHGKIDLRDLQVRYAP 1259
I L Q ++ +++ ER+F+ P + + RP S G+ID+ ++ Y
Sbjct: 299 IELTTQQSMLQQAVVAGERVFELMDGPRQQ--YGNDDRPLQS----GRIDIDNVSFAYRD 352
Query: 1260 HMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLH 1319
VL+ I+ + P +VG TGSGKSTL L G+I +DG +S +
Sbjct: 353 DNL-VLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHS 411
Query: 1320 DLRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVT 1379
LR ++++ QDPV+ T +NV + ++EQ+W+AL+ QL + R L + +
Sbjct: 412 VLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLG 471
Query: 1380 ENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITI 1439
E G N S+GQ+QL+ L RVL++ +IL+LDEATA++D+ T+ IQQ+L T++ I
Sbjct: 472 EQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVI 531
Query: 1440 AHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENK 1473
AHR+++++++D +L+L G E + ++LL +
Sbjct: 532 AHRLSTIVEADTILVLHRGQAVEQGTHQQLLAAQ 565
|
Length = 592 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 211 bits (539), Expect = 3e-58
Identities = 136/577 (23%), Positives = 237/577 (41%), Gaps = 62/577 (10%)
Query: 941 ILQIASNYWIAWATPASKDIKPRVTGSMLLIVFVALAFGSSFCILARSTLLATAGYKTAT 1000
I IA +A + + + LLI+ + +F R L A K
Sbjct: 14 IAIIAQAALLADILTKLIEGQLFQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRA 73
Query: 1001 LLFNKMHYCIFRAPMSFFDATPSGRIINRAST--DQSAVDLS--IPALIGSFAFSIIRVL 1056
L + + + +F P+G A +Q + +P + S ++ +L
Sbjct: 74 SLRQLVLDKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLL-IL 132
Query: 1057 GVIGVMSLVAWQVFIVFIPVIATCIWYQQYYI--SSARELSRLVGVCKAPLIQHFAETVS 1114
I + A + ++ P+I + +S ++ S L L HF + +
Sbjct: 133 IAIFFFNWAAALILLITAPLIPLFMILVGLAAKDASEKQFSALAR-----LSGHFLDRLR 187
Query: 1115 GSTTIRSFDQE-----------SRFIDTNMELMDGYSRPTFHVAAAMEWL---------- 1153
G T+R+F + F M ++ R F +A +E+
Sbjct: 188 GLETLRAFGRTEATEERIRKDSEDFRKATMSVL----RIAFLSSAVLEFFAYLSIALVAV 243
Query: 1154 --GFRLDMLSNITFAFSLVFLISIPKGFIDPAIAGLAVTYGLTLNNLQAMLIWLACQMEN 1211
GFRL ++T L LI P+ F + L + A
Sbjct: 244 YIGFRLLGEGDLTLFAGLFVLILAPEFFQ--PLRDLGSFFHAAAAGEAA----------- 290
Query: 1212 KIISVERIFQYTCIPSEPPLEIEESRPNHSWPSHGKIDLRDLQVRYAPHMPFVLRGISCT 1271
+++F P P + + +I L +L RY P L ++ T
Sbjct: 291 ----ADKLFTLLESPVATPGS--GEKAEVANEPPIEISLENLSFRY-PDGKPALSDLNLT 343
Query: 1272 FPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSIIPQD 1331
+ T +VG +G+GKSTL+ L + P G+I ++GID+ + R ++S + Q+
Sbjct: 344 IKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQN 403
Query: 1332 PVMFEGTVRSNVDPLEEY-TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQR 1390
P +F GT+R N+ +DE+I ALD+ L + V K +G LD+ + E G S GQ
Sbjct: 404 PYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDG-LDTVIGEGGAGLSGGQA 462
Query: 1391 QLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSD 1450
Q + L R LL +L+LDE TA +D T+ +I Q+L++ TV+ I HR+ D+D
Sbjct: 463 QRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADAD 522
Query: 1451 MVLLLSHGLIEEYDSPRKLLENKSSSFSQLVAEYTQR 1487
+++L +G + E + +L E + ++ L+ + R
Sbjct: 523 RIVVLDNGRLVEQGTHEELSEKQ-GLYANLLKQQEGR 558
|
Length = 559 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 208 bits (531), Expect = 5e-57
Identities = 134/537 (24%), Positives = 241/537 (44%), Gaps = 72/537 (13%)
Query: 969 LLIVFVAL-----AFGSSFCI--LARSTLLATAGYKTATLLFNKMHYCIFRAPMSFFDAT 1021
L+++ +A+ +F S++ + ++ + +F K+ P+SFFD
Sbjct: 58 LVVIGLAVLRGICSFVSTYLLSWVSNKVVR-----DIRVRMFEKL----LGLPVSFFDRQ 108
Query: 1022 PSGRIINRASTDQSAVDLSIPALIGSFAFSIIR----VLGVIGVMSLVAWQ---VFIVFI 1074
P+G +++R + D + A +F ++R V+G+ V+ +WQ + +V +
Sbjct: 109 PTGTLLSRITFD---SEQVASAATDAFI-VLVRETLTVIGLFIVLLYYSWQLTLIVVVML 164
Query: 1075 PVIATCIWYQQYYISSARELSRLVGVCKAPLIQHFAETVSGSTTIRSF---DQESRFIDT 1131
PV++ + R +S+ + + ET+ G ++ F E+R D
Sbjct: 165 PVLS---ILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDA 221
Query: 1132 NMELMDGYSRPTFHVAAAMEWLGFRLDMLSNITFAFSLVFLISI-----------PKGFI 1180
A M G ++ + + +L ++ I F
Sbjct: 222 VSNRNRRL-------AMKMTSAGSISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFT 274
Query: 1181 DPAIAGLAVTYGL-TLNNLQAMLIWLACQMENKIISVERIFQYTCIPSEP---PLEIEES 1236
A +A+ L +L N+ A M+ + + E +F P E IE +
Sbjct: 275 AFITAMIALIRPLKSLTNVNAP-------MQRGLAAAESLFTLLDSPPEKDTGTRAIERA 327
Query: 1237 RPNHSWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLF 1296
R G ++ R++ RY L IS + +VGR+GSGKSTL+ +
Sbjct: 328 R--------GDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIP 379
Query: 1297 RIVEPAAGQILIDGIDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNV--DPLEEYTDEQI 1354
R EP +GQIL+DG D++ L LR +++++ QD V+F T+ +N+ E+ +I
Sbjct: 380 RFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEI 439
Query: 1355 WEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATAS 1414
AL D V K LD+ + ENG S GQRQ + + R LLK IL+LDEAT++
Sbjct: 440 ERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSA 499
Query: 1415 VDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLE 1471
+D ++ L+Q +L + T + IAHR++++ +D ++++ G I E + +LL
Sbjct: 500 LDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLA 556
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 196 bits (500), Expect = 1e-56
Identities = 87/232 (37%), Positives = 135/232 (58%), Gaps = 10/232 (4%)
Query: 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1307
I+ ++ Y P P VL+ +S T P KK IVG +GSGKST+++ LFR + ++G IL
Sbjct: 1 IEFENVTFAYDPGRP-VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSIL 59
Query: 1308 IDGIDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNVDPLEEY-----TDEQIWEALDKCQ 1362
IDG DI + L LR + ++PQD V+F T+ N+ Y TDE++ EA Q
Sbjct: 60 IDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNI----RYGRPDATDEEVIEAAKAAQ 115
Query: 1363 LGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNL 1422
+ D++ + D+ V E G S G++Q V + R +LK IL+LDEAT+++DT T+
Sbjct: 116 IHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTERE 175
Query: 1423 IQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKS 1474
IQ +LR T I IAHR+++++++D +++L G I E + +LL
Sbjct: 176 IQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGG 227
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 188 bits (480), Expect = 7e-55
Identities = 71/211 (33%), Positives = 112/211 (53%), Gaps = 41/211 (19%)
Query: 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1307
I+ +++ Y VL+ +S T +K IVG +GSGKSTL++ L R+ +P +G+IL
Sbjct: 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL 60
Query: 1308 IDGIDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEV 1367
IDG+D+ + L LR ++ +PQDP +F GT+R N+
Sbjct: 61 IDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI------------------------ 96
Query: 1368 RKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSL 1427
S GQRQ + + R LL+ IL+LDEAT+++D T+ LI ++L
Sbjct: 97 -----------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEAL 139
Query: 1428 RQHFSDCTVITIAHRITSVIDSDMVLLLSHG 1458
R TVI IAHR++++ D+D +++L G
Sbjct: 140 RALAKGKTVIVIAHRLSTIRDADRIIVLDDG 170
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 199 bits (509), Expect = 3e-54
Identities = 141/579 (24%), Positives = 251/579 (43%), Gaps = 34/579 (5%)
Query: 289 LKLIKAMFRSVW-KDVLLTALVAIVCTLATYVGPYLIDTLVQYLSGKRDFENEGYALVSA 347
L L++ + + + K +LL L+ ++ L + + P LI ++ L E L+
Sbjct: 1 LSLLRRLLKYLKYKLLLLAILLLLLSALLSLLLPLLIGRIIDALLADLGELLELLLLLLL 60
Query: 348 FCVAKLVECLCQRFFVFRLEQLGIRLRAALIAMIYNKGLKLSSQAKQGNTSGEIINFMTV 407
+ V Q + RL G ++ A L ++ K L+L SG++I+ +T
Sbjct: 61 LALLGGVLRALQSYLGSRL---GQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTN 117
Query: 408 DAERVAELSWYIHDPWLFLFEVAL---SFLILYKSLGIASVAAFFGTVIFMLVNVPLSTV 464
D E V+ L L + L S ++L+ ++ + LV L+
Sbjct: 118 DVEAVSNL--VSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARK 175
Query: 465 QEKFQNELMKSKDERMKATSEILRNMRILKLQGWE----LKFLSKTIDLRKSESGWLKRC 520
K + ++ E E L +R++K G E +F +LR++ +
Sbjct: 176 SRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASR-- 233
Query: 521 LYTSSITSFVFWCAPTFVSVITFGTCILLKVPLESGKVLSAIATFRLLQILIYKLPAIIS 580
L + + V V+ G ++L L G + + I L I +L ++S
Sbjct: 234 LEALLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVS 293
Query: 581 MTIQTKVSLQRIASFFCLDELQPDLVEKQPRGSSETAIEIADGNFSWDISSHNPTLKDIN 640
+ + + +R+ + D P + +IE + +FS+ P LKDI+
Sbjct: 294 LLQRASAAAERLFELLDEEPEVED--PPDPLKDTIGSIEFENVSFSYP--GKKPVLKDIS 349
Query: 641 LKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK-------------AYVA 687
+ G +VA+ G GSGKS+L+ +L SG + + G V+
Sbjct: 350 FSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVS 409
Query: 688 QSPWIQSGKIEDNILFGK-EMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGG 746
Q P + SG I +NI G+ + E L + + + L G T+VGERG+NLSGG
Sbjct: 410 QDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGG 469
Query: 747 QKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLP 806
Q+QR+ IARAL ++ I + D+ SA+D T + + L LL +T L + H++ +
Sbjct: 470 QRQRLAIARALLRNPPILILDEATSALDTETEALIQD-ALKKLLKGRTTLIIAHRLSTIK 528
Query: 807 AADLVLVIKDGKITQAGKYTDVINSGTDFMELVDAHKQA 845
AD ++V+ +G+I + G + +++ G + L A A
Sbjct: 529 NADRIIVLDNGRIVERGTHEELLAKGGLYARLYQAQGGA 567
|
Length = 567 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 188 bits (479), Expect = 5e-54
Identities = 75/225 (33%), Positives = 125/225 (55%), Gaps = 1/225 (0%)
Query: 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1307
++ +++ RY P VLR IS P + +VG +GSGKSTL+ + R + +G+IL
Sbjct: 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRIL 60
Query: 1308 IDGIDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDE 1366
IDG D+ L LR ++ ++ QD +F TV N+ T E++ EA +
Sbjct: 61 IDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEF 120
Query: 1367 VRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQS 1426
+ + D+ + E G S GQRQ + + R LLK IL+LDEAT+++DT ++ L+Q +
Sbjct: 121 IMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAA 180
Query: 1427 LRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLE 1471
L + + T IAHR++++ ++D +++L G I E + +LL
Sbjct: 181 LERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLA 225
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 188 bits (479), Expect = 2e-53
Identities = 95/253 (37%), Positives = 151/253 (59%), Gaps = 4/253 (1%)
Query: 585 TKVSLQRIASFFCLDELQPDLVEKQPRGSSETAIEIADGNFSW-DISSH-NPTLKDINLK 642
T V ++ + +F+ DE +L+EK + +++ D N + ++ P LK+INLK
Sbjct: 2 TGVIMENVTAFW--DEGFGELLEKAKQENNDRKHSSDDNNLFFSNLCLVGAPVLKNINLK 59
Query: 643 VFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNIL 702
+ G +A+ G+ GSGK+SLL ILGE+ G +K G ++ +Q WI G I++NI+
Sbjct: 60 IEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWIMPGTIKENII 119
Query: 703 FGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDAD 762
FG D RY +V+ AC LE+D+ D TV+GE GI LSGGQ+ RI +ARA+Y+DAD
Sbjct: 120 FGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDAD 179
Query: 763 IYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQA 822
+YL D PF +D T +F+ + L+ +KT + VT ++E L AD +L++ +G
Sbjct: 180 LYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFY 239
Query: 823 GKYTDVINSGTDF 835
G ++++ + DF
Sbjct: 240 GTFSELQSLRPDF 252
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 173 bits (442), Expect = 7e-49
Identities = 80/229 (34%), Positives = 142/229 (62%), Gaps = 4/229 (1%)
Query: 1248 IDLRDLQVRYA--PHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQ 1305
I+ +++ RY P +P +L+G+S T P K +VG +G GKST++ L R +P +G+
Sbjct: 1 IEFKNVSFRYPSRPDVP-ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGE 59
Query: 1306 ILIDGIDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLG 1364
IL+DG+DI + L LR+++ ++ Q+PV+F+GT+ N+ + TDE++ EA K +
Sbjct: 60 ILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIH 119
Query: 1365 DEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQ 1424
D + D+ V E G S GQ+Q + + R LL+ KIL+LDEAT+++D ++ L+Q
Sbjct: 120 DFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQ 179
Query: 1425 QSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENK 1473
++L + T I IAHR++++ ++D++ +L +G + E + +L+ K
Sbjct: 180 EALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQK 228
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 175 bits (445), Expect = 7e-49
Identities = 86/237 (36%), Positives = 142/237 (59%), Gaps = 2/237 (0%)
Query: 1246 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQ 1305
G++ ++DL +Y VL IS + ++ G++GRTGSGKSTL+ R++ G
Sbjct: 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGD 59
Query: 1306 ILIDGIDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGD 1365
I IDG+ + + L R +IPQ +F GT R N+DP +++DE+IW+ ++ L
Sbjct: 60 IQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKS 119
Query: 1366 EVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQ 1425
+ + G+LD + + G S G +QL+CL R +L + KIL+LDE +A +D T +I++
Sbjct: 120 VIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRK 179
Query: 1426 SLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSFSQLVA 1482
+L+Q F+DCTVI HRI ++++ L++ + +YDS +KLL N+ S F Q ++
Sbjct: 180 TLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLL-NEKSHFKQAIS 235
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 172 bits (437), Expect = 7e-45
Identities = 105/467 (22%), Positives = 192/467 (41%), Gaps = 31/467 (6%)
Query: 1023 SGRIINRASTDQSAVD-----LSIPAL--IGSFAFSIIRVLGVIGVMSLVAWQVFIVFIP 1075
SG ++NR D A+D + PA+ + A I L + + + ++ +
Sbjct: 114 SGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTI-GLSFFSIPLALLLGLILLLLL 172
Query: 1076 VIATCIWYQQYYISSARELSRLVGVCKAPLIQHFAETVSGSTTIRSFDQESRFIDTNMEL 1135
+I ++Y+ R+ + +A L F + V G + F E +
Sbjct: 173 LIIPTLFYRA-----GRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEAT 227
Query: 1136 MDGYSRPTFHVAAAMEWLGFRLDMLSNITFAFSLV-FLISIPKG---FIDPAIAGLAVTY 1191
+ + A L +++ + L+ + G A+A L +
Sbjct: 228 EASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIF- 286
Query: 1192 GLTLNNLQAMLIWLACQMENKIISVERIFQYTCIPSEPPLEIEESRPNHSWPSHGKIDL- 1250
L + + + I S R+ I + P E + L
Sbjct: 287 -AALEAFEPLAPGAFQHLGQVIASARRL---NDILDQKP----EVTFPDEQTATTGQALE 338
Query: 1251 -RDLQVRYAPHMPFVLRGISCTF-PGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILI 1308
R++ Y L+ + T GEK I+GR+GSGKSTL+Q L +P G I +
Sbjct: 339 LRNVSFTYPGQQTKALKNFNLTLAQGEK-VAILGRSGSGKSTLLQLLAGAWDPQQGSITL 397
Query: 1309 DGIDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEV 1367
+G++I+ + LR +S++ Q +F GT+R N+ + +DE++W AL + L +
Sbjct: 398 NGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLL 457
Query: 1368 RKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSL 1427
L++ + E G S G+R+ + L R LL + +LDE T +D T+ + L
Sbjct: 458 ESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALL 517
Query: 1428 RQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKS 1474
+H T++ + HR+ + D +++L +G I E + +LL N
Sbjct: 518 FEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLANNG 564
|
Length = 573 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 160 bits (406), Expect = 3e-44
Identities = 82/220 (37%), Positives = 122/220 (55%), Gaps = 9/220 (4%)
Query: 1246 GKIDLRDLQVRYAPHMPFVLRGISCTF-PGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAG 1304
G+I+ R++ Y L +S T GEK I+GR GSGKSTL++ L + +P +G
Sbjct: 1 GRIEFRNVSFSYPNQEIPALDNVSLTIRAGEK-VAIIGRVGSGKSTLLKLLAGLYKPTSG 59
Query: 1305 QILIDGIDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNV---DPLEEYTDEQIWEALDKC 1361
+L+DG DI + DLR + +PQD +F GT+R N+ P DE+I A +
Sbjct: 60 SVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAP--LADDERILRAAELA 117
Query: 1362 QLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDN 1421
+ D V K LD ++ E G S GQRQ V L R LL IL+LDE T+++D ++
Sbjct: 118 GVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEE 177
Query: 1422 LIQQSLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGLI 1460
+++ LRQ D T+I I HR S++D D ++++ G I
Sbjct: 178 RLKERLRQLLGDKTLIIITHR-PSLLDLVDRIIVMDSGRI 216
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 170 bits (432), Expect = 2e-43
Identities = 134/439 (30%), Positives = 210/439 (47%), Gaps = 59/439 (13%)
Query: 1048 FAFSIIRVLGVIGVMSLVAWQVFIVFIPVIATCIWYQQYYIS-SARELSRLVGVCKAPLI 1106
FA + V+ +IG + W V +V IP+I Q +S A E R A L+
Sbjct: 272 FALLFLLVIAIIG--GPLVW-VPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLV 328
Query: 1107 QHFAETVSGSTTIRSFDQESRFIDTNMELMDGYSRPTFHVAAAMEWLGFRLDMLSNITFA 1166
E++SG TI++ + E RF E AA+ G + LSN+
Sbjct: 329 ----ESLSGLETIKALNAEGRF-QRRWE----------QTVAALARSGLKSRFLSNLATN 373
Query: 1167 FSL--------------VFLISIPKGFIDPAIAGLAVTYGLT------LNNLQAMLIWLA 1206
F+ V+LIS G + + GL L+ L L +L
Sbjct: 374 FAQFIQQLVSVAIVVVGVYLIS--DGEL--TMGGLIACVMLSGRALAPLGQLAGLLTRYQ 429
Query: 1207 CQMENKIISVERIFQYTCIPSEPPLEIEESRPNHSWPSHGKIDLRDLQVRYAPHMPFVLR 1266
Q + + S++ + Q +P E P E +R H G+I+ R++ Y L
Sbjct: 430 -QAKTALQSLDELMQ---LPVERP---EGTRFLHRPRLQGEIEFRNVSFAYPGQETPALD 482
Query: 1267 GISCTF-PGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRL 1325
+S T PGEK I+GR GSGKSTL++ L + +P G +L+DG+DI I DLR +
Sbjct: 483 NVSLTIRPGEK-VAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNI 541
Query: 1326 SIIPQDPVMFEGTVRSNV---DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENG 1382
+PQDP +F GT+R N+ P DE+I A + + + VR+ LD ++ E G
Sbjct: 542 GYVPQDPRLFYGTLRDNIALGAPY--ADDEEILRAAELAGVTEFVRRHPDGLDMQIGERG 599
Query: 1383 ENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHR 1442
+ S GQRQ V L R LL+ IL+LDE T+++D ++ + L++ + T++ + HR
Sbjct: 600 RSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHR 659
Query: 1443 ITSVID-SDMVLLLSHGLI 1460
TS++D D ++++ +G I
Sbjct: 660 -TSLLDLVDRIIVMDNGRI 677
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 167 bits (425), Expect = 1e-42
Identities = 128/478 (26%), Positives = 236/478 (49%), Gaps = 30/478 (6%)
Query: 1017 FFDATPSGRIINRASTDQSAVDLSIPALIGSFAFSIIRVLGVIGVMSLVAWQV-FIVFI- 1074
FFD +G + +R S+D + S+ + +++ +LG++G M ++ ++ + I
Sbjct: 251 FFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLIN 310
Query: 1075 --PVIATCIWYQQYYISSARELSRLVGVCKAPLIQHFAETVSGSTTIRSFDQE----SRF 1128
V + + Y + EL V A Q E +SG T+RSF E SRF
Sbjct: 311 LPLVFLAEKVFGKRYQLLSEELQEAV----AKANQVAEEALSGMRTVRSFAAEEGEASRF 366
Query: 1129 IDTNMELMDGYSRPTFHVAAAMEWLGFRLDMLSNITFAFSLVFLISIPKGFIDPAIAGLA 1188
+ E + R A + W L ML + + L+ K ++ L
Sbjct: 367 KEALEETLQLNKRKALAYAGYL-WTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLL 425
Query: 1189 VTYGLTLNNLQAMLIWLACQMENKIISVERIFQYTCIPSEPPLEIE-ESRPNHSWPSHGK 1247
L ++ + + M+ + + E++F+Y + +P + + P G
Sbjct: 426 YQEQLG-EAVRVLSYVYSGMMQA-VGASEKVFEY--LDRKPNIPLTGTLAPL---NLEGL 478
Query: 1248 IDLRDLQVRYA--PHMPFVLRGISCTF-PGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAG 1304
I+ +D+ Y P +P VL+G++ T PGE +VG +GSGKST+ L + +P G
Sbjct: 479 IEFQDVSFSYPNRPDVP-VLKGLTFTLHPGEV-VALVGPSGSGKSTVAALLQNLYQPTGG 536
Query: 1305 QILIDGIDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQL 1363
Q+L+DG+ + H L +++++ Q+PV+F G+VR N+ L + DE+I A
Sbjct: 537 QVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANA 596
Query: 1364 GDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLI 1423
D + + D++V E G S GQ+Q + + R L+++ ++L+LDEAT+++D + L+
Sbjct: 597 HDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLL 656
Query: 1424 QQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSFSQLV 1481
Q+S + + TV+ IAHR+++V +D +L+L G + E + ++L+E++ + LV
Sbjct: 657 QES--RSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQ-GCYKHLV 711
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 163 bits (414), Expect = 2e-42
Identities = 118/458 (25%), Positives = 206/458 (44%), Gaps = 42/458 (9%)
Query: 1040 SIPALIGSFAFSIIRVLGVIGVMSLVAWQVF-IVFIPVIATCIWYQQYY--------ISS 1090
I ++ F+I+ L I +++++ W+V+ F + +
Sbjct: 51 GIETILRWILFNILPTLVEISLVAVILWRVYGWWFALTTLVTVILYLLFTVIVSDWRTDF 110
Query: 1091 ARELSRLVGVCKAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGYSRPTFHVAAAM 1150
R ++ A I +++ T++ F E ++ Y + V ++
Sbjct: 111 RRLMNNADSDANAKAI----DSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVHVSL 166
Query: 1151 EWLGFRLDMLSNITFAFSLVFLISIPKGFIDPAIAGLAVTYG-LTLN---NLQAMLIWLA 1206
L F F+ L ++ ++ L V G LT+ N+ A+L L+
Sbjct: 167 LVLNF----GQTAIFSTGLRVMM---------TMSALGVEEGQLTVGDLVNVNALLFQLS 213
Query: 1207 CQMENKIISVERIFQYTCIPSEPPLEIEESRPNHS--------WP-SHGKIDLRDLQVRY 1257
N + R + E ++ + S WP G + ++ Y
Sbjct: 214 -IPLNFLGFSYREIRQALTDMEKMFDLLDVEAEVSDAPDAPPLWPVRLGAVAFINVSFAY 272
Query: 1258 APHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIG 1317
P P +L GIS T P K IVG +G+GKST+++ LFR + +G I IDG DI +
Sbjct: 273 DPRRP-ILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVT 331
Query: 1318 LHDLRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDS 1376
LR + I+PQD V+F T+ N+ + T E++ A + Q+ D ++ D+
Sbjct: 332 QQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDT 391
Query: 1377 KVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTV 1436
V E G S G++Q V + R +LK IL+LDEAT+++DT T+ IQ +LR+ + T
Sbjct: 392 GVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTT 451
Query: 1437 ITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKS 1474
+ IAHR++++ID+D +++L +G I E + +LL
Sbjct: 452 LVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLAAGG 489
|
Length = 497 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 163 bits (414), Expect = 4e-42
Identities = 99/429 (23%), Positives = 175/429 (40%), Gaps = 62/429 (14%)
Query: 1055 VLGVIGVMSLVAWQVFIVFIPVIATCIWYQQYYISSA-----RELSRLVGVCKAPLIQHF 1109
+L + ++ + ++ P+I + + +A LSRL G HF
Sbjct: 135 ILAAVFPQDWISGLILLLTAPLIPIFMILIGWAAQAAARKQWAALSRLSG--------HF 186
Query: 1110 AETVSGSTTIRSFDQESRFIDTNMELMDGYSRPTFHVAAAMEWLGFRLDMLSNITFAFSL 1169
+ + G T++ F + + Y T M L R+ LS + L
Sbjct: 187 LDRLRGLPTLKLFGRAKAQAAAIRRSSEEYRERT------MRVL--RIAFLS----SAVL 234
Query: 1170 VFLISIPKGFIDPAIAGLAVTYGLTLNN----LQAMLIWLACQME--------------- 1210
++ ++A +AV G L L L L E
Sbjct: 235 ELFATL-------SVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGAQYHAR 287
Query: 1211 -NKIISVERIFQYTCIPSEPPLEIEESRPNHSWPSHGKIDLRDLQVRYAPHMPFVLRGIS 1269
+ + + E +F P + ++ + V Y P LR +S
Sbjct: 288 ADGVAAAEALFAVLDAAPRPLAGKAPVTAAPAPS----LEFSGVSVAYPGRRP-ALRPVS 342
Query: 1270 CTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSIIP 1329
T P ++ +VG +G+GKSTL+ L V+P G I ++G+ ++ R +++ +P
Sbjct: 343 FTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVP 402
Query: 1330 QDPVMFEGTVRSNV---DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWS 1386
Q P +F GT+ N+ P + +D +I EAL++ L + V LD+ + E G S
Sbjct: 403 QHPFLFAGTIAENIRLARP--DASDAEIREALERAGLDEFVAALPQGLDTPIGEGGAGLS 460
Query: 1387 MGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSV 1446
GQ Q + L R L+ +L+LDE TA +D T+ + ++LR TV+ + HR+
Sbjct: 461 GGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQGRTVLLVTHRLALA 520
Query: 1447 IDSDMVLLL 1455
+D +++L
Sbjct: 521 ALADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 165 bits (420), Expect = 4e-42
Identities = 135/531 (25%), Positives = 243/531 (45%), Gaps = 45/531 (8%)
Query: 965 TGSMLLIVFVALAFGSSFCILARSTLLATAGYKTATLLFNKMHYCIFRAPMSFFDATPSG 1024
T S+L + +A+A R+ L A + L +++ + P+ +F++ G
Sbjct: 177 TLSVLALAMLAVAIFEPALGGLRTYLFAHLTSRIDVELGARLYRHLLGLPLGYFESRRVG 236
Query: 1025 RIINR------------ASTDQSAVDLSIPALIGSFAFSIIRVLGVIGVMSLVAWQVFIV 1072
+ R S +DL + + F L + + SLV + + V
Sbjct: 237 DTVARVRELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGVVIGSLVCYALLSV 296
Query: 1073 FI-PVIATCIWYQQYYISSARELSRLVGVCKAPLIQHFAETVSGSTTIRSFDQESRFIDT 1131
F+ P++ + + + SA S LV E+V+G TI++ E +F +
Sbjct: 297 FVGPILRKRV--EDKFERSAAATSFLV------------ESVTGIETIKATATEPQFQNR 342
Query: 1132 NMELMDGYSRPTFHVAAAMEWLGFRLDMLSNITFAFSLVFLIS-IPKGFIDPAIAGLAVT 1190
+ Y +F V G ++++ +TFA L F + G + P G V
Sbjct: 343 WDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTFAILLWFGAHLVIGGALSP---GQLVA 399
Query: 1191 YGLTLNNLQAMLIWLACQM----ENKIISVERIFQYTCIPSEPPLEIEESRPNHSWPSHG 1246
+ + + ++ LA Q+ + I++ER+ P+EP + P G
Sbjct: 400 FNMLAGRVTQPVLRLA-QLWQDFQQTGIALERLGDILNSPTEPRSAGLAALPELR----G 454
Query: 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQI 1306
I +++ RYAP P VL ++ + GIVG +GSGKSTL + L R+ P GQ+
Sbjct: 455 AITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQV 514
Query: 1307 LIDGIDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNV---DPLEEYTDEQIWEALDKCQL 1363
L+DG+D+++ LR ++ ++ Q+ V+F ++R N+ +P E + A
Sbjct: 515 LVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNP--GAPFEHVIHAAKLAGA 572
Query: 1364 GDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLI 1423
D + + +++V E G N S GQRQ + + R L+ +IL+ DEAT+++D ++ LI
Sbjct: 573 HDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALI 632
Query: 1424 QQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKS 1474
+++R+ TVI IAHR+++V D +++L G I E +LL +
Sbjct: 633 MRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLALQG 683
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 162 bits (412), Expect = 1e-41
Identities = 140/552 (25%), Positives = 237/552 (42%), Gaps = 115/552 (20%)
Query: 967 SMLLIVFVALAFGSSFCILARSTLLATAGYKTATLLFNKMHYCIFRAPMSFFDATPSGRI 1026
+ LL+V + LA G++ AR L+ G + + + + SFFD SG +
Sbjct: 62 AFLLVVALVLALGTA----ARFYLVTWLGERVVADIRRAVFAHLISLSPSFFDKNRSGEV 117
Query: 1027 INRASTD----QSAVDLSIPALIGSFAF-SIIRVLGVIGVM--------SLVAWQVFIVF 1073
++R +TD QS + S+ S A + + +G + +M SLV V +V
Sbjct: 118 VSRLTTDTTLLQSVIGSSL-----SMALRNALMCIGGLIMMFITSPKLTSLVLLAVPLVL 172
Query: 1074 IPVIATCIWYQQYYISSARELSRLVGVCKAPLIQHFAETVSGSTTIRSFDQE----SRFI 1129
+P++ + R+LSR A + ET+ T+++F E SRF
Sbjct: 173 LPILL--------FGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFG 224
Query: 1130 DTNMELMDGYSRPT--------------FHVAAAMEWLGFRLDMLSNIT------FAFSL 1169
+ + + F + W+G + ++ F F
Sbjct: 225 GAVEKAYEAARQRIRTRALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYA 284
Query: 1170 VFLISIPKGFIDPAIAGLAVTYGLTLNNLQ----AMLIWLACQMENKIISVERIFQYTCI 1225
V +AG T LQ A ER+
Sbjct: 285 VM------------VAGSIGTLSEVWGELQRAAGAA---------------ERLI----- 312
Query: 1226 PSEPPLEIEESRPNHSWPSH---------GKIDLRDLQVRYAPHMP--FVLRGISCTF-P 1273
E+ ++ P+ P+H G+I+ + Y P P L G++ T P
Sbjct: 313 ------ELLQAEPDIKAPAHPKTLPVPLRGEIEFEQVNFAY-PARPDQPALDGLNLTVRP 365
Query: 1274 GEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSIIPQDPV 1333
GE +VG +G+GKSTL Q L R +P +G+IL+DG+D+ + +LR R++++PQDPV
Sbjct: 366 GET-VALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPV 424
Query: 1334 MFEGTVRSNV---DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQR 1390
+F +V N+ P + TDE++ A + + D+ + E G S GQR
Sbjct: 425 LFAASVMENIRYGRP--DATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQR 482
Query: 1391 QLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSD 1450
Q + + R +LK IL+LDEAT+++D ++ L+QQ+L T + IAHR+ +V+ +D
Sbjct: 483 QRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKAD 542
Query: 1451 MVLLLSHGLIEE 1462
++++ G I
Sbjct: 543 RIVVMDQGRIVA 554
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 151 bits (382), Expect = 6e-41
Identities = 77/237 (32%), Positives = 132/237 (55%), Gaps = 4/237 (1%)
Query: 1248 IDLRDLQVRYAPHMPFVLRGISCTF-PGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQI 1306
I ++ RY P P +L IS PGE GIVGR+GSGKSTL + + R P G++
Sbjct: 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEV-VGIVGRSGSGKSTLTKLIQRFYVPENGRV 59
Query: 1307 LIDGIDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNVDPLEEYTD-EQIWEALDKCQLGD 1365
L+DG D++L LR ++ ++ Q+ V+F ++R N+ + E++ EA D
Sbjct: 60 LVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHD 119
Query: 1366 EVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQ 1425
+ + D+ V E G S GQRQ + + R L+ +IL+ DEAT+++D +++ I +
Sbjct: 120 FISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMR 179
Query: 1426 SLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSFSQLVA 1482
++ + TVI IAHR+++V ++D ++++ G I E S +LL ++ ++ L
Sbjct: 180 NMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLA-ENGLYAYLYQ 235
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 162 bits (411), Expect = 7e-41
Identities = 143/563 (25%), Positives = 250/563 (44%), Gaps = 40/563 (7%)
Query: 295 MFRSVWKDVLLTALVAIVCTLAT-YVGPYLIDTLVQYLSGKRDFENEGYALVSAFCVAKL 353
+R + +VLL +L+ + LAT +ID ++ L +A L
Sbjct: 151 KYRRLLFEVLLASLLLQLLALATPLFSQIVIDKVLP----DASRSTLTV-LAIGLLLAAL 205
Query: 354 VECLCQRFFVFRLEQLGIRLRAALIAMIYNKGLKLSSQAKQGNTSGEIINFMTVDAERVA 413
E L + + + LG RL L + L+L + + GEII+ + + E++
Sbjct: 206 FEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRVR-ELEQIR 264
Query: 414 E-LSWY----IHDPWLFLFEVALSFLILYKSLGIASVAAFFGTVIFMLVNVPLSTVQEKF 468
E L+ I D L +A+ FL +K I A + +L+ + + +
Sbjct: 265 EFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAI----PLNVLITLIFQPLLRRK 320
Query: 469 QNELMKSKDERMKATSEILRNMRILKLQGWELKFLSKTIDL--RKSESGWLKRCLYT--S 524
+L++ E+ E ++ + +K E +F S+ + ++ G+ L +
Sbjct: 321 TRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILN 380
Query: 525 SITSFVFWCAPTFVSVITFGTCILLKVPLESGKVLSAIATFRLLQILIYKLPAIISMTIQ 584
+I S + + V ++ FG ++L+ L G++++ I +L + + Q
Sbjct: 381 TIKSLLQ--QLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQ 438
Query: 585 TKVSLQRIASFFCLDELQPDLVEKQPRGSSETAIEIADGNFSWDISSHNPTLKDINLKVF 644
KV+L+R+ Q + IE + +F + P L+D++L++
Sbjct: 439 AKVALERLGDILDTPPEQEGDKTLIHLPKLQGEIEFENVSFRYG-PDDPPVLEDLSLEIP 497
Query: 645 HGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK-------------AYVAQSPW 691
G +VA+ G GSGKS+LL +LG G + L G YV Q P+
Sbjct: 498 PGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPF 557
Query: 692 IQSGKIEDNILFGKEM--DRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQ 749
+ SG I +NI G D E A A + E +E L G T VGE G NLSGGQ+Q
Sbjct: 558 LFSGSIRENIALGNPEATDEEIIEAAQLAGAHE-FIENLPMGYDTPVGEGGANLSGGQRQ 616
Query: 750 RIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAAD 809
R+ +ARAL I L D+ SA+D T + + LL +L +TV+ + H++ + +AD
Sbjct: 617 RLALARALLSKPKILLLDEATSALDPET-EAIILQNLLQILQGRTVIIIAHRLSTIRSAD 675
Query: 810 LVLVIKDGKITQAGKYTDVINSG 832
++V+ GKI + G + +++ G
Sbjct: 676 RIIVLDQGKIVEQGSHEELLAQG 698
|
Length = 709 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 161 bits (410), Expect = 1e-40
Identities = 133/527 (25%), Positives = 227/527 (43%), Gaps = 64/527 (12%)
Query: 969 LLIVFVALAFGSSFCILARSTLLATAGYKTATLLFNKMHYCIFRAPMSFFDATPSGRIIN 1028
LL+ A + L K A + + + I R P+ FF +G I +
Sbjct: 196 LLLGMGLTALLQGVLTWLQLYYLRRLQIKLAVGMSARFLWHILRLPVRFFAQRHAGDIAS 255
Query: 1029 RAST-DQSAVDLSIPALIGSFAFSIIRVLGVIGVMSLVAWQVFIVFIPVIATCIWYQQYY 1087
R DQ A LS + + A + ++ +M L + ++ I A + Q
Sbjct: 256 RVQLNDQVAEFLS--GQLATTALDAVMLVFYALLMLLYDPVLTLIGIAFAAINVLALQLV 313
Query: 1088 ISSARELSRLVGVCKAPLIQHFAETVSGST--------TIRSFDQESRFID--------- 1130
+ +R L Q + ++G T+++ ES F
Sbjct: 314 SRRRVDANR-------RLQQDAGK-LTGVAISGLQSIETLKASGLESDFFSRWAGYQAKL 365
Query: 1131 TNMELMDGYSRPTFHV---------AAAMEWLGFRLDMLSNITFAFSLVFLISIPKGFID 1181
N + G V +A + +G M +T + F S+ F++
Sbjct: 366 LNAQQELGVLTQILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQ-SLMSSFLE 424
Query: 1182 PAIAGLAVTYGLTLNNLQAMLIWLACQMENKIISVERIFQYTCIPSEPPLEIEE---SRP 1238
P + L V +G TL L+ L L + N P +P LE EE +
Sbjct: 425 P-VNNL-VGFGGTLQELEGDLNRLDDVLRN--------------PVDPLLEEEEAPAAGS 468
Query: 1239 NHSWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRI 1298
S G ++LR++ Y+P P ++ S T ++ +VG +GSGKST+ + + +
Sbjct: 469 EPSPRLSGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGL 528
Query: 1299 VEPAAGQILIDGIDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNV---DPLEEYTDEQIW 1355
+P +G+IL DGI I L ++++ QD +FEGTVR N+ DP D +
Sbjct: 529 YQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDP--TIPDADLV 586
Query: 1356 EALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASV 1415
A + D + + G D+++ E G N S GQRQ + + R L++ IL+LDEAT+++
Sbjct: 587 RACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSAL 646
Query: 1416 DTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 1462
D T+ +I +LR+ CT I +AHR++++ D D +++L G + +
Sbjct: 647 DPETEKIIDDNLRRR--GCTCIIVAHRLSTIRDCDEIIVLERGKVVQ 691
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 145 bits (369), Expect = 6e-40
Identities = 67/214 (31%), Positives = 96/214 (44%), Gaps = 56/214 (26%)
Query: 618 IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTL 677
IE + +FS+ P LKD++L + G +VA+ G GSGKS+LL +L SG +
Sbjct: 1 IEFKNVSFSYP-GRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEI 59
Query: 678 KLCGTK-------------AYVAQSPWIQSGKIEDNILFGKEMDRERYNAVLDACSLEKD 724
+ G AYV Q P++ SG I +NIL
Sbjct: 60 LIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENIL---------------------- 97
Query: 725 LEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKE 784
SGGQ+QRI IARAL +D I + D+ SA+D T L E
Sbjct: 98 -------------------SGGQRQRIAIARALLRDPPILILDEATSALDPET-EALILE 137
Query: 785 VLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGK 818
L L KTV+ + H++ + AD ++V+ DG+
Sbjct: 138 ALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 155 bits (394), Expect = 2e-39
Identities = 77/257 (29%), Positives = 126/257 (49%), Gaps = 21/257 (8%)
Query: 606 VEKQPRGSSETA-----IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKS 660
V G IEI+ N S+ P L D+NL + G A+ G G+GKS
Sbjct: 302 VATPGSGEKAEVANEPPIEISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKS 361
Query: 661 SLLSCILGEVPKISGTLKLCGTK-------------AYVAQSPWIQSGKIEDNILFGKEM 707
+LL+ +LG + G +++ G ++V+Q+P++ +G I +NIL +
Sbjct: 362 TLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPD 421
Query: 708 D-RERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLF 766
E A LD L + + G TV+GE G LSGGQ QR+ +ARAL A + L
Sbjct: 422 ASDEEIIAALDQAGLLEFVP-KPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLL 480
Query: 767 DDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYT 826
D+P + +DA T + + L L KTVL +TH++E AD ++V+ +G++ + G +
Sbjct: 481 DEPTAHLDAET-EQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHE 539
Query: 827 DVINSGTDFMELVDAHK 843
++ + L+ +
Sbjct: 540 ELSEKQGLYANLLKQQE 556
|
Length = 559 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 156 bits (395), Expect = 6e-39
Identities = 131/494 (26%), Positives = 226/494 (45%), Gaps = 63/494 (12%)
Query: 1010 IFRAPMSFFDATPSGRIINRASTDQSAVDLSIPALIGSFAFSIIRVLGVIGVMSLV-AWQ 1068
+F PMSFF +G I++R + S +D + S S+ + ++ ++ L Q
Sbjct: 239 LFELPMSFFSTRRTGEIVSRFTDASSIIDA-----LASTILSLFLDMWILVIVGLFLVRQ 293
Query: 1069 VFIVF------IPVIATCIWYQQYYISSARELSRLVGVCKAPLIQHFAETVSGSTTIRSF 1122
++F IPV A I + + +L+ A L E ++G TI+S
Sbjct: 294 NMLLFLLSLLSIPVYAVIIIL---FKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSL 350
Query: 1123 DQES-RFIDTNMELMDGYSRPTFHVAAAME------------------WLGFRLDMLSNI 1163
E+ R+ + E D Y +F A + W G L M +
Sbjct: 351 TSEAERYSKIDSEFGD-YLNKSFKYQKADQGQQAIKAVTKLILNVVILWTGAYLVMRGKL 409
Query: 1164 TFAFSLVF--LISIPKGFIDPAIAGLAVTYGLTLNNLQAMLIWLACQMENKIISVERIFQ 1221
T + F L+S F+ P L N+ I L +++ ++ R+ +
Sbjct: 410 TLGQLITFNALLSY---FLTP------------LENI----INLQPKLQAARVANNRLNE 450
Query: 1222 YTCIPSEPPLEIEESRPNHSWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIV 1281
+ SE I + + +G I + D+ Y +L IS T KT IV
Sbjct: 451 VYLVDSE---FINKKKRTELNNLNGDIVINDVSYSYGYGSN-ILSDISLTIKMNSKTTIV 506
Query: 1282 GRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSIIPQDPVMFEGTVRS 1341
G +GSGKSTL + L + +G+IL++G + I H LR ++ +PQ+P +F G++
Sbjct: 507 GMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILE 566
Query: 1342 N--VDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVL 1399
N + E + ++IW A + ++ D++ ++++E G + S GQ+Q + L R L
Sbjct: 567 NLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARAL 626
Query: 1400 LKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGL 1459
L K+L+LDE+T+++DT T+ I +L + D T+I +AHR++ SD +++L HG
Sbjct: 627 LTDSKVLILDESTSNLDTITEKKIVNNL-LNLQDKTIIFVAHRLSVAKQSDKIIVLDHGK 685
Query: 1460 IEEYDSPRKLLENK 1473
I E S +LL+
Sbjct: 686 IIEQGSHDELLDRN 699
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 147 bits (374), Expect = 4e-37
Identities = 85/267 (31%), Positives = 133/267 (49%), Gaps = 5/267 (1%)
Query: 1178 GFIDPAIAGLAVTYGLTLNNLQAMLIWLACQMENKIISVERIFQYTCIPSEPPLEIEES- 1236
G + P + V L A L A Q+ + ERI + + P+ +
Sbjct: 266 GRLAPVTLAVLVLLPLAAFEAFAALPAAAQQLTRVRAAAERIVEVL--DAAGPVAEGSAP 323
Query: 1237 RPNHSWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLF 1296
++LRDL Y P P VL G+S P ++ I+G +GSGKSTL+ TL
Sbjct: 324 AAGAVGLGKPTLELRDLSAGY-PGAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLA 382
Query: 1297 RIVEPAAGQILIDGIDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIW 1355
+++P G++ +DG+ +S + ++R R+S+ QD +F+ TVR N+ + TDE++W
Sbjct: 383 GLLDPLQGEVTLDGVPVSSLDQDEVRRRVSVCAQDAHLFDTTVRENLRLARPDATDEELW 442
Query: 1356 EALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASV 1415
AL++ L D +R LD+ + E G S G+RQ + L R LL IL+LDE T +
Sbjct: 443 AALERVGLADWLRALPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHL 502
Query: 1416 DTATDNLIQQSLRQHFSDCTVITIAHR 1442
D T + + + L S TV+ I H
Sbjct: 503 DAETADELLEDLLAALSGRTVVLITHH 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 137 bits (347), Expect = 2e-36
Identities = 75/224 (33%), Positives = 127/224 (56%), Gaps = 8/224 (3%)
Query: 1243 PSH--GKIDLRDLQVRYA--PHMPFVLRGISCTF-PGEKKTGIVGRTGSGKSTLIQTLFR 1297
P H G + +++ Y P VL+ +S T PGE T +VG +GSGKST++ L
Sbjct: 5 PDHLKGIVKFQNVTFAYPTRPDTL-VLQDVSFTLHPGEV-TALVGPSGSGKSTVVALLEN 62
Query: 1298 IVEPAAGQILIDGIDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWE 1356
+P GQ+L+DG IS L +++S++ Q+PV+F +++ N+ L+ + E + E
Sbjct: 63 FYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKE 122
Query: 1357 ALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVD 1416
A K + + D++V E G S GQ+Q V + R L++ ++L+LDEAT+++D
Sbjct: 123 AAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALD 182
Query: 1417 TATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLI 1460
++ +QQ+L TV+ IAHR+++V +D +L+L G I
Sbjct: 183 AESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 146 bits (371), Expect = 2e-36
Identities = 80/240 (33%), Positives = 129/240 (53%), Gaps = 15/240 (6%)
Query: 1245 HGKIDLRDLQVRYAPHMPFVLRGISCTF-PGEKKTGIVGRTGSGKSTLIQTLFRIVEPAA 1303
G ++ D+ Y V +S PG+ IVG TG+GKSTLI L R+ +P +
Sbjct: 332 KGAVEFDDVSFSYDNSRQGV-EDVSFEAKPGQT-VAIVGPTGAGKSTLINLLQRVFDPQS 389
Query: 1304 GQILIDGIDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQ 1362
G+ILIDG DI + LR ++++ QD +F ++ N+ + TDE++ A ++ Q
Sbjct: 390 GRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQ 449
Query: 1363 LGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNL 1422
D + +K D+ V E G S G+RQ + + R LLK IL+LDEAT+++D T+
Sbjct: 450 AHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAK 509
Query: 1423 IQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSFSQLVA 1482
++ +L + T IAHR+++V ++D +L+ +G + E S SF +LVA
Sbjct: 510 VKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVE-----------SGSFDELVA 558
|
Length = 588 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 135 bits (341), Expect = 1e-35
Identities = 68/220 (30%), Positives = 106/220 (48%), Gaps = 17/220 (7%)
Query: 618 IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTL 677
IE + NFS+D P LKDIN + G VA+ G G+GK++L++ ++ G +
Sbjct: 3 IEFENVNFSYD--EKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQI 60
Query: 678 KLCGTK-------------AYVAQSPWIQSGKIEDNILFGK-EMDRERYNAVLDACSLEK 723
+ G V Q ++ SG I +NI G+ E
Sbjct: 61 LIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHD 120
Query: 724 DLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFK 783
+ L G TV+GE G NLS G++Q + IARA+ +D I + D+ S +D T L +
Sbjct: 121 FIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEK-LIQ 179
Query: 784 EVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAG 823
E L L+ +T + + H++ + AD +LV+ DGKI + G
Sbjct: 180 EALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEG 219
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 141 bits (358), Expect = 1e-34
Identities = 82/270 (30%), Positives = 136/270 (50%), Gaps = 23/270 (8%)
Query: 592 IASFFCLDELQPDLVEKQPRGSSETAIEIADGNFSWDISSHN--PTLKDINLKVFHGMRV 649
+ +F P EK+ +S + I + I S + +N + G R+
Sbjct: 324 LVTFLETPLAHPQQGEKEL--ASNDPVTIEAEDLE--ILSPDGKTLAGPLNFTLPAGQRI 379
Query: 650 AVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK-------------AYVAQSPWIQSGK 696
A+ G G+GK+SLL+ +LG +P G+LK+ G + ++V Q+P + G
Sbjct: 380 ALVGPSGAGKTSLLNALLGFLP-YQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGT 438
Query: 697 IEDNILFGK-EMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIAR 755
+ DN+L G + E+ L+ + + L +L G T +G++ LS GQ QR+ +AR
Sbjct: 439 LRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALAR 498
Query: 756 ALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIK 815
AL Q + L D+P +++DAH+ L + L +T L VTHQ+E L D + V++
Sbjct: 499 ALLQPCQLLLLDEPTASLDAHS-EQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQ 557
Query: 816 DGKITQAGKYTDVINSGTDFMELVDAHKQA 845
DG+I Q G Y ++ +G F L+ AH+Q
Sbjct: 558 DGQIVQQGDYAELSQAGGLFATLL-AHRQE 586
|
Length = 588 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 139 bits (353), Expect = 4e-34
Identities = 81/237 (34%), Positives = 133/237 (56%), Gaps = 3/237 (1%)
Query: 1246 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQ 1305
G I+ R++ Y LR I+ P K +VGR+GSGKST+ L R + G+
Sbjct: 340 GDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGE 399
Query: 1306 ILIDGIDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNV--DPLEEYTDEQIWEALDKCQL 1363
IL+DG D+ L LR +++++ Q+ +F T+ +N+ E+Y+ EQI EA
Sbjct: 400 ILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYA 459
Query: 1364 GDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLI 1423
D + K + LD+ + ENG S GQRQ + + R LL+ IL+LDEAT+++DT ++ I
Sbjct: 460 MDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAI 519
Query: 1424 QQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSFSQL 1480
Q +L + + T + IAHR++++ +D +L++ G I E + +LL ++QL
Sbjct: 520 QAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQN-GVYAQL 575
|
Length = 582 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 139 bits (353), Expect = 9e-34
Identities = 125/535 (23%), Positives = 237/535 (44%), Gaps = 62/535 (11%)
Query: 975 ALAFGSSFCILARS-TLLATAGYKTATL---LFNKMHYCIFRAPMSFFDATPSGRIINRA 1030
A A G++ LA+S +L A+L +++++ R P+SFF +G + +RA
Sbjct: 184 AAAVGAAAFQLAQSLAVLRLETRMDASLQAAVWDRL----LRLPVSFFRQYSTGDLASRA 239
Query: 1031 STDQSAVD-----LS---IPALIGSF--AFSIIRVLGVIGVMSLVAWQVFIVFIPVIATC 1080
+ LS + L+ ++ + ++LVA + +V I V
Sbjct: 240 M----GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAVALALVAIAVTLVL 295
Query: 1081 IWYQQYYISSARELS-RLVGVCKAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGY 1139
Q ELS ++ G+ + ++G + +R E+R +
Sbjct: 296 GLLQVRKERRLLELSGKISGL--------TVQLINGISKLRVAGAENRAF---ARWAKLF 344
Query: 1140 SRPTFHVAAAMEWLGFRLDMLSNITFAFSLVFLISIPKGFIDPAIAGLAVTYGLTLNNLQ 1199
SR L + N+ F+ V + + + A L GL+L +
Sbjct: 345 SR--------QRKLELSAQRIENLLTVFNAVLPV-LTSAALFAAAISLLGGAGLSLGSFL 395
Query: 1200 A------MLIWLACQMENKIISV-ERIFQYT-CIP---SEPPLEIEESRPNHSWPSHGKI 1248
A Q+ N +IS+ I + P + P ++ ++ P G I
Sbjct: 396 AFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEAKTDPG---KLSGAI 452
Query: 1249 DLRDLQVRYAPHMPFVLRGISCTF-PGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1307
++ + RY P P +L +S PGE IVG +GSGKSTL++ L P +G +
Sbjct: 453 EVDRVTFRYRPDGPLILDDVSLQIEPGEF-VAIVGPSGSGKSTLLRLLLGFETPESGSVF 511
Query: 1308 IDGIDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEV 1367
DG D++ + + +R +L ++ Q+ + G++ N+ T ++ WEA L +++
Sbjct: 512 YDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDI 571
Query: 1368 RKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSL 1427
R + + ++E G S GQRQ + + R L+++ +IL+ DEAT+++D T ++ +SL
Sbjct: 572 RAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESL 631
Query: 1428 RQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSFSQLVA 1482
+ T I IAHR++++ ++D + +L G + + + +L+ + F+QL
Sbjct: 632 ER--LKVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMA-REGLFAQLAR 683
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 128 bits (323), Expect = 3e-33
Identities = 73/217 (33%), Positives = 106/217 (48%), Gaps = 16/217 (7%)
Query: 617 AIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGT 676
IE + +FS+ + P L +++L + G +VA+ G VGSGKS+LL + G SG+
Sbjct: 2 RIEFRNVSFSYP-NQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGS 60
Query: 677 LKLCGTKA-------------YVAQSPWIQSGKIEDNILFGK-EMDRERYNAVLDACSLE 722
+ L GT YV Q + G + DNI G D ER + +
Sbjct: 61 VLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVT 120
Query: 723 KDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLF 782
+ G +GERG LSGGQ+Q + +ARAL D I L D+P SA+D
Sbjct: 121 DFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMD-MNSEERL 179
Query: 783 KEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKI 819
KE L LL KT++ +TH+ L D ++V+ G+I
Sbjct: 180 KERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRI 216
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 135 bits (342), Expect = 5e-33
Identities = 65/196 (33%), Positives = 103/196 (52%), Gaps = 15/196 (7%)
Query: 633 NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK--------- 683
P L+ ++ V G RVA+ G G+GKS+LL+ +LG V G++ + G
Sbjct: 335 RPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSW 394
Query: 684 ----AYVAQSPWIQSGKIEDNILFGK-EMDRERYNAVLDACSLEKDLEILSFGDQTVVGE 738
A+V Q P++ +G I +NI + + L+ L++ + L G T +GE
Sbjct: 395 RDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIREALERAGLDEFVAALPQGLDTPIGE 454
Query: 739 RGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYV 798
G LSGGQ QR+ +ARA +DA + L D+P + +DA T + + E L L +TVL V
Sbjct: 455 GGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEV-LEALRALAQGRTVLLV 513
Query: 799 THQVEFLPAADLVLVI 814
TH++ AD ++V+
Sbjct: 514 THRLALAALADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 135 bits (342), Expect = 7e-33
Identities = 80/237 (33%), Positives = 131/237 (55%), Gaps = 3/237 (1%)
Query: 1246 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQ 1305
G ++ R + +A V +S + IVG TG+GK+TLI L R+ +P GQ
Sbjct: 333 GAVEFRHITFEFANSSQGV-FDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQ 391
Query: 1306 ILIDGIDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLG 1364
ILIDGIDI+ + LR ++ + QD +F ++R N+ E TDE+++EA
Sbjct: 392 ILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAH 451
Query: 1365 DEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQ 1424
D + K+ D+ V E G S G+RQ + + R +LK IL+LDEAT+++D T+ ++
Sbjct: 452 DFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVK 511
Query: 1425 QSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSFSQLV 1481
++ + T IAHR+++V ++D+VL L G + E S ++L+ K F +L+
Sbjct: 512 NAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELI-QKDGRFYKLL 567
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 1e-32
Identities = 71/235 (30%), Positives = 121/235 (51%), Gaps = 16/235 (6%)
Query: 618 IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTL 677
+E + F + P L+DI+L + G VA+ G GSGKS+L++ I SG +
Sbjct: 1 VEFKNVTFRYP-GDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRI 59
Query: 678 KLCGTK-------------AYVAQSPWIQSGKIEDNILFGK-EMDRERYNAVLDACSLEK 723
+ G V+Q ++ + + +NI +G+ RE A + +
Sbjct: 60 LIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHE 119
Query: 724 DLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFK 783
+ L G TV+GERG+ LSGGQ+QRI IARAL +D I + D+ SA+D + L +
Sbjct: 120 FIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTES-ERLVQ 178
Query: 784 EVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVINSGTDFMEL 838
L L+ ++T + H++ + AD ++V++DGKI + G + +++ G + +L
Sbjct: 179 AALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGGVYAKL 233
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 137 bits (348), Expect = 2e-32
Identities = 89/321 (27%), Positives = 151/321 (47%), Gaps = 17/321 (5%)
Query: 289 LKLIKAMFRSVWKDVL---LTALVAIVCTLATYVGPYLIDTLVQYLSGKRDFENEGYALV 345
L L++ +F ++ V L++ VCTL P L+ V++L G LV
Sbjct: 232 LSLLRTLFAALPYYVWWQIPFKLLSDVCTLTL---PVLLKYFVKFLDADNATWGRGLGLV 288
Query: 346 SAFCVAKLVECLCQRFFVFRLEQLGIRLRAALIAMIYNKGLKLSSQAKQG---NTSGEII 402
+ +L++ +C F + + G++ R+AL A+I+ K +SS++ NT G II
Sbjct: 289 LTLFLTQLIQSVCLHRFYYISIRCGLQYRSALNALIFEKCFTISSKSLAQPDMNT-GRII 347
Query: 403 NFMTVDAERVAELSWYIHDPWLFLFEVALSFLILYKSLG---IASVAAFFGTVIFMLVNV 459
N M+ D ER+ Y W + LS L+L + +G + +VA T + +N
Sbjct: 348 NMMSTDVERINSFMQYCMYLWSSPMVLLLSILLLSRLVGWCALMAVAVLLVT---LPLNG 404
Query: 460 PLSTVQEKFQNELMKSKDERMKATSEILRNMRILKLQGWELKFLSKTIDLRKSESGWLKR 519
+ Q + ++ K+ D R+KAT+E +RI K WE F++ D R E +L+
Sbjct: 405 AIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARELRYLRD 464
Query: 520 CLYTSSITSFVFWCAPTFVSVITFGTCILLKVPLESGKVLSAIATFRLLQILIYKLPAII 579
TSFV PT + + F LL L V IA +L++ + +P +
Sbjct: 465 VQLARVATSFVNNATPTLMIAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVF 524
Query: 580 SMTIQTKVSLQRIASFF-CLD 599
+ +Q VS++RI++F C +
Sbjct: 525 TTVLQFLVSIKRISTFLECDN 545
|
Length = 1560 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 126 bits (318), Expect = 2e-32
Identities = 71/236 (30%), Positives = 119/236 (50%), Gaps = 19/236 (8%)
Query: 618 IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTL 677
IE + F++D P LKD++ + G +VA+ G GSGKS++L + SG++
Sbjct: 1 IEFENVTFAYD--PGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSI 58
Query: 678 KLCGTK-------------AYVAQSPWIQSGKIEDNILFGKE--MDRERYNAVLDACSLE 722
+ G V Q + + I NI +G+ D E A A +
Sbjct: 59 LIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHD 118
Query: 723 KDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLF 782
K + G T+VGERG+ LSGG+KQR+ IARA+ ++ I L D+ SA+D HT +
Sbjct: 119 KIMR-FPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQ 177
Query: 783 KEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVINSGTDFMEL 838
L + +T + + H++ + AD ++V+KDG+I + G + +++ G + E+
Sbjct: 178 AA-LRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLYAEM 232
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 134 bits (339), Expect = 2e-32
Identities = 142/584 (24%), Positives = 251/584 (42%), Gaps = 63/584 (10%)
Query: 296 FRSVWKDVLLTALVAIVCT-LATYVGPYLIDTLVQ--YLSGKRDFENEGYALVSAFCVAK 352
F ++ +L ALVA++ T AT PY + ++ + N +A + +
Sbjct: 12 FVRPYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKDSSGLLNRYFAFLLVVALVL 71
Query: 353 LVECLCQRFFVFRLEQLGIRLRAALIAMIYNKGLKLSSQAKQGNTSGEIINFMTVDAERV 412
+ + + V L G R+ A + ++ + LS N SGE+++ +T D +
Sbjct: 72 ALGTAARFYLVTWL---GERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLL 128
Query: 413 -----AELSWYIHDPWLFLFEVALSFLILYKSLGIASVAAFFGTVIFMLVNVPLSTVQEK 467
+ LS + + + + + + F+ K + +A LV +P+ +
Sbjct: 129 QSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLA-------VPLVLLPILLFGRR 181
Query: 468 FQNELMKSKDERMKATS----EILRNMRILKLQGWELKFLSK-TIDLRKSESGWLKRCLY 522
+ +S+D R+ E L +R ++ G E S+ + K+ +R
Sbjct: 182 VRKLSRESQD-RIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRT 240
Query: 523 TSSITSFVFWCAPTFVSVITFGTCILLKVPLESG--KVLS-AIATFRLLQILIYKLPAII 579
+ +T+ V V+ FG + + L G V++ ++ L Q + Y +
Sbjct: 241 RALLTAIVI--------VLVFGAIVGV---LWVGAHDVIAGKMSAGTLGQFVFYAVMVAG 289
Query: 580 SMTIQTKV--SLQRIAS----FFCLDELQPDL-VEKQPRGSSETA---IEIADGNFSWDI 629
S+ ++V LQR A L + +PD+ P+ IE NF++
Sbjct: 290 SIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAHPKTLPVPLRGEIEFEQVNFAYPA 349
Query: 630 SSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK------ 683
P L +NL V G VA+ G G+GKS+L +L SG + L G
Sbjct: 350 RPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDP 409
Query: 684 -------AYVAQSPWIQSGKIEDNILFGK-EMDRERYNAVLDACSLEKDLEILSFGDQTV 735
A V Q P + + + +NI +G+ + E A A + + L G T
Sbjct: 410 AELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTY 469
Query: 736 VGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTV 795
+GERG+ LSGGQ+QRI IARA+ +DA I L D+ SA+DA + L ++ L L+ +T
Sbjct: 470 LGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAES-EQLVQQALETLMKGRTT 528
Query: 796 LYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVINSGTDFMELV 839
L + H++ + AD ++V+ G+I G + ++I G + L
Sbjct: 529 LIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAKGGLYARLA 572
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 133 bits (337), Expect = 3e-32
Identities = 70/226 (30%), Positives = 113/226 (50%), Gaps = 16/226 (7%)
Query: 614 SETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKI 673
+ A+E+ + +F++ LK+ NL + G +VA+ G GSGKS+LL + G
Sbjct: 333 TGQALELRNVSFTYPGQQT-KALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ 391
Query: 674 SGTLKLCGTK-------------AYVAQSPWIQSGKIEDNILFGK-EMDRERYNAVLDAC 719
G++ L G + + + Q + SG + DN+ + E A L
Sbjct: 392 QGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQV 451
Query: 720 SLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGS 779
LEK LE G T +GE G LSGG+++R+ +ARAL DA ++L D+P +D T
Sbjct: 452 GLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITER 511
Query: 780 HLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKY 825
+ +L KT+L VTH++ L D ++V+ +GKI + G +
Sbjct: 512 QVL-ALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTH 556
|
Length = 573 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 132 bits (334), Expect = 1e-31
Identities = 77/265 (29%), Positives = 131/265 (49%), Gaps = 12/265 (4%)
Query: 1220 FQY--TCIPS-EPPLEIEESRP------NHSW-PSHGKIDLRDLQVRYAPHMPFVLRGIS 1269
FQ+ I S EI E +P + + L ++ Y VL+G+S
Sbjct: 301 FQHLGQVIASARRINEITEQKPEVTFPTTSTAAADQVSLTLNNVSFTYPDQPQPVLKGLS 360
Query: 1270 CTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSIIP 1329
+K ++GRTG GKSTL+Q L R +P G+IL++G I+ LR +S++
Sbjct: 361 LQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVS 420
Query: 1330 QDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMG 1388
Q +F T+R N+ +DE + E L + L + +G L++ + E G S G
Sbjct: 421 QRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKG-LNAWLGEGGRQLSGG 479
Query: 1389 QRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVID 1448
+++ + + R LL +L+LDE T +D T+ I + L +H + TV+ I HR+T +
Sbjct: 480 EQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQ 539
Query: 1449 SDMVLLLSHGLIEEYDSPRKLLENK 1473
D + ++ +G I E + ++LL +
Sbjct: 540 FDRICVMDNGQIIEQGTHQELLAQQ 564
|
Length = 574 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 123 bits (311), Expect = 2e-31
Identities = 76/242 (31%), Positives = 123/242 (50%), Gaps = 27/242 (11%)
Query: 618 IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCIL-------GEV 670
IE + +F + P LK ++L + G VA+ G+ G GKS+++S + GE+
Sbjct: 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60
Query: 671 PKISG----TLKLCGTK---AYVAQSPWIQSGKIEDNILFGKEMDRERYNAVLDACSLEK 723
+ G L L + V+Q P + G I +NI +GK D +A K
Sbjct: 61 L-LDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKP-DATDEEVE-EAA---K 114
Query: 724 DLEILSF------GDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHT 777
I F G T+VGERG LSGGQKQRI IARAL ++ I L D+ SA+DA +
Sbjct: 115 KANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAES 174
Query: 778 GSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVINSGTDFME 837
L +E L + +T + + H++ + ADL+ V+++G++ + G + +++ + +
Sbjct: 175 -EKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKGVYAK 233
Query: 838 LV 839
LV
Sbjct: 234 LV 235
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 4e-31
Identities = 55/212 (25%), Positives = 96/212 (45%), Gaps = 42/212 (19%)
Query: 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1307
+++ ++ RY P VLR +S + + I+G +GSGKSTL + + ++ P +G++
Sbjct: 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVR 60
Query: 1308 IDGIDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEV 1367
+DG DIS ++L + +PQD +F G++ N+
Sbjct: 61 LDGADISQWDPNELGDHVGYLPQDDELFSGSIAENI------------------------ 96
Query: 1368 RKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSL 1427
S GQRQ + L R L +IL+LDE + +D + + Q++
Sbjct: 97 -----------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAI 139
Query: 1428 RQ-HFSDCTVITIAHRITSVIDSDMVLLLSHG 1458
+ T I IAHR ++ +D +L+L G
Sbjct: 140 AALKAAGATRIVIAHRPETLASADRILVLEDG 171
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 129 bits (328), Expect = 6e-31
Identities = 61/222 (27%), Positives = 115/222 (51%), Gaps = 13/222 (5%)
Query: 1268 ISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSI 1327
++ T P ++ +VG +G+GK++L+ L + P G + I+GI++ + R LS
Sbjct: 369 LNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSW 427
Query: 1328 IPQDPVMFEGTVRSNV---DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGEN 1384
+ Q+P + GT+R NV +P + +DEQ+ +AL+ + + + LD+ + +
Sbjct: 428 VGQNPQLPHGTLRDNVLLGNP--DASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAG 485
Query: 1385 WSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRIT 1444
S+GQ Q + L R LL+ ++L+LDE TAS+D ++ L+ Q+L T + + H++
Sbjct: 486 LSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLE 545
Query: 1445 SVIDSDMVLLLSHGLIEE---YDSPRKLLENKSSSFSQLVAE 1483
+ D + ++ G I + Y L F+ L+A
Sbjct: 546 DLAQWDQIWVMQDGQIVQQGDYAE----LSQAGGLFATLLAH 583
|
Length = 588 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 128 bits (325), Expect = 3e-30
Identities = 77/252 (30%), Positives = 122/252 (48%), Gaps = 20/252 (7%)
Query: 584 QTKVSLQRIASFFCLDELQPDLVEKQP--RGSSETAIEIADGNFSWDISSHNPTLKDINL 641
Q K +LQ + L +P+ + R + IE + +F++ P L +++L
Sbjct: 430 QAKTALQSLDELMQLPVERPE--GTRFLHRPRLQGEIEFRNVSFAYPGQET-PALDNVSL 486
Query: 642 KVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKA-------------YVAQ 688
+ G +VA+ G +GSGKS+LL +LG G++ L G YV Q
Sbjct: 487 TIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQ 546
Query: 689 SPWIQSGKIEDNILFGK-EMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQ 747
P + G + DNI G D E + + + + G +GERG +LSGGQ
Sbjct: 547 DPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQ 606
Query: 748 KQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPA 807
+Q + +ARAL +D I L D+P SA+D + FK+ L L KT++ VTH+ L
Sbjct: 607 RQAVALARALLRDPPILLLDEPTSAMDNRSEER-FKDRLKRWLAGKTLVLVTHRTSLLDL 665
Query: 808 ADLVLVIKDGKI 819
D ++V+ +G+I
Sbjct: 666 VDRIIVMDNGRI 677
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 4e-30
Identities = 72/243 (29%), Positives = 121/243 (49%), Gaps = 37/243 (15%)
Query: 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVE-----PA 1302
I+LRDL V Y L+ IS P + T ++G +G GKSTL++ L R+ + P
Sbjct: 1 IELRDLNVYYGDKH--ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD 58
Query: 1303 AGQILIDGIDISLIGLHD--LRTRLSIIPQDPVMFEGTVRSNVD--------PLEEYTDE 1352
G++L+DG DI + + LR R+ ++ Q P F G++ NV L+E DE
Sbjct: 59 EGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDE 118
Query: 1353 QIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEAT 1412
++ EAL K L DEV+ + L S GQ+Q +CL R L ++L+LDE T
Sbjct: 119 RVEEALRKAALWDEVKDRLHALG---------LSGGQQQRLCLARALANEPEVLLLDEPT 169
Query: 1413 ASVDTATDNLIQQSLRQHFSDCTVITIAH------RITSVIDSDMVLLLSHGLIEEYDSP 1466
+++D + I++ + + + T++ + H R+ +D L +G + E+
Sbjct: 170 SALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARV-----ADRTAFLLNGRLVEFGPT 224
Query: 1467 RKL 1469
++
Sbjct: 225 EQI 227
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 123 bits (310), Expect = 7e-29
Identities = 129/576 (22%), Positives = 236/576 (40%), Gaps = 64/576 (11%)
Query: 296 FRSVW------KDVLLTALVAIVCTLATYVGPYLIDTLVQYLSGKRDFENEGYAL-VSAF 348
FR +W K L+ A VA++ AT L L L + V
Sbjct: 2 FRRLWSYVRPYKAGLVLAGVAMILVAAT--ESTLAALLKPLLDDGFGGRDRSVLWWVPLV 59
Query: 349 CVA-KLVECLCQRFFVFRLEQLGIRLRAALIAMIYNKGLKLSSQAKQGNTSGEIINFMTV 407
+ ++ +C + L + ++ + ++ K L L +G +++ +T
Sbjct: 60 VIGLAVLRGICSFVSTYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITF 119
Query: 408 DAERVAELSWYIHDPWLFLFE-----VALSFLILYKSLGIASVAAFFGTVIFMLVNVPLS 462
D+E+VA D ++ L + L ++LY S + + V+ ++++ +
Sbjct: 120 DSEQVAS---AATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVV----VMLPVLSILMR 172
Query: 463 TVQEKFQN---ELMKSKDERMKATSEILRNMRILKLQGWELKFLSKTIDLRKSESGWLKR 519
V ++ + E+ S + E L+ R++KL G + + + +
Sbjct: 173 RVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMK 232
Query: 520 CLYTSSITS-FVFWCAPTFVSVITFGTCILLKVPLESGKVLSAIATFRLLQILIY---KL 575
SI+S A ++V+ F I L F I + K
Sbjct: 233 MTSAGSISSPITQLIASLALAVVLF---IALFQAQAGSLTAGDFTAFITAMIALIRPLKS 289
Query: 576 PAIISMTIQTK-VSLQRIASFFCLDELQPDLVEKQPRGSSETAIEIADGNFSWDISSHN- 633
++ +Q + + + + LD P + R AIE A G+ + +
Sbjct: 290 LTNVNAPMQRGLAAAESLFTL--LD--SPPEKDTGTR-----AIERARGDVEFRNVTFRY 340
Query: 634 -----PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK----- 683
P L I+L + G VA+ G GSGKS+L++ I SG + L G
Sbjct: 341 PGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYT 400
Query: 684 --------AYVAQSPWIQSGKIEDNILFGK--EMDRERYNAVLDACSLEKDLEILSFGDQ 733
A V+Q + + I +NI +G+ + DR L A + ++ L G
Sbjct: 401 LASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLD 460
Query: 734 TVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSK 793
T +GE G+ LSGGQ+QR+ IARAL +DA I + D+ SA+D + + + L L+ +
Sbjct: 461 TPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLV-QAALERLMQGR 519
Query: 794 TVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVI 829
T L + H++ + AD ++V+ DG+I + G + +++
Sbjct: 520 TTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELL 555
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 124 bits (313), Expect = 7e-29
Identities = 132/586 (22%), Positives = 256/586 (43%), Gaps = 82/586 (13%)
Query: 303 VLLTALVAIVCTLATYVGPYLIDTLVQ-YLSGKRDFENEGYALVS-AFCVAKLVECLCQR 360
++ + AI+ TL + G Y + ++ Y+ K ++S +A +++ +
Sbjct: 158 IVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKM---MGTLGIISIGLIIAYIIQQILSY 214
Query: 361 FFVFRLEQLGIRLRAALIAMIYNKGLKLSSQAKQGNTSGEIINFMTVDAERVAELSWYIH 420
+F L LG RL +I +L +GEI++ T DA + +
Sbjct: 215 IQIFLLNVLGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDA----- 268
Query: 421 DPWLFLFEVALS-FLILYKSLGIASVAAFFGTVIFM--LVNVPL-STVQEKFQNELMKSK 476
L LS FL ++ + + ++F+ L+++P+ + + F+ K
Sbjct: 269 -----LASTILSLFLDMWILVIVGLFLVRQNMLLFLLSLLSIPVYAVIIILFKRTFNKLN 323
Query: 477 DERMKATSEILRNMRILKLQGWEL-------------------KFLSKTIDLRKSESGW- 516
+ M+A + +L + I L G E +L+K+ +K++ G
Sbjct: 324 HDAMQANA-VLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQ 382
Query: 517 LKRCLYTSSITSFVFWCAPTFVSVITFGTCILLKVPLESGKVLSAIATFRLLQILIYKLP 576
+ + + + W G ++++ L G++++ A LL + L
Sbjct: 383 AIKAVTKLILNVVILW----------TGAYLVMRGKLTLGQLITFNA---LLSYFLTPLE 429
Query: 577 AIISMTIQTKVSLQRIASFFCLDEL---QPDLVEKQPRGSSETA---IEIADGNFSWDIS 630
II++ Q K+ R+A+ L+E+ + + K+ R I I D ++S+
Sbjct: 430 NIINL--QPKLQAARVANNR-LNEVYLVDSEFINKKKRTELNNLNGDIVINDVSYSYGYG 486
Query: 631 SHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK------- 683
S L DI+L + + + G GSGKS+L ++G SG + L G
Sbjct: 487 S--NILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRH 544
Query: 684 ------AYVAQSPWIQSGKIEDNILFG--KEMDRERYNAVLDACSLEKDLEILSFGDQTV 735
Y+ Q P+I SG I +N+L G + + ++ A + ++ D+E + G QT
Sbjct: 545 TLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTE 604
Query: 736 VGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTV 795
+ E G ++SGGQKQRI +ARAL D+ + + D+ S +D T + +L L KT+
Sbjct: 605 LSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLL--NLQDKTI 662
Query: 796 LYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVINSGTDFMELVDA 841
++V H++ +D ++V+ GKI + G + ++++ + L+
Sbjct: 663 IFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDRNGFYASLIHN 708
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 8e-29
Identities = 70/225 (31%), Positives = 100/225 (44%), Gaps = 39/225 (17%)
Query: 619 EIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLK 678
E+ + +FS+ P L DI+L + G V + G GSGKS+LL + G + SG +
Sbjct: 1 ELKNLSFSYP-DGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVL 59
Query: 679 LCGTKAYVAQSPWIQSGKI----------------EDNILFG-------KEMDRERYNAV 715
+ G K S K+ E+ + FG +E ER
Sbjct: 60 VDG-KDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEA 118
Query: 716 LDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDA 775
L+ LE + F LSGGQKQR+ IA L D DI L D+P + +D
Sbjct: 119 LELVGLEGLRDRSPF-----------TLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDP 167
Query: 776 HTGSHLFKEVLLGLLNS-KTVLYVTHQVEFLPA-ADLVLVIKDGK 818
L E+L L KT++ VTH ++ L AD V+V++DGK
Sbjct: 168 AGRRELL-ELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 121 bits (306), Expect = 2e-28
Identities = 76/268 (28%), Positives = 119/268 (44%), Gaps = 37/268 (13%)
Query: 561 AIATFRLLQILIYK----LPAIISMTIQTKVSLQRIASFFCLDELQPDLVEKQPRGSSET 616
+A LL + ++ LPA + + + +RI E+ GS+
Sbjct: 272 TLAVLVLLPLAAFEAFAALPAAAQQLTRVRAAAERI------VEVLDAAGP-VAEGSAPA 324
Query: 617 A---------IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCIL 667
A +E+ D + + + P L ++L + G RVA+ G GSGKS+LL+ +
Sbjct: 325 AGAVGLGKPTLELRDLSAGYPGA--PPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLA 382
Query: 668 GEVPKISGTLKLCGTKA-------------YVAQSPWIQSGKIEDNILFGK-EMDRERYN 713
G + + G + L G AQ + + +N+ + + E
Sbjct: 383 GLLDPLQGEVTLDGVPVSSLDQDEVRRRVSVCAQDAHLFDTTVRENLRLARPDATDEELW 442
Query: 714 AVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAV 773
A L+ L L L G TV+GE G LSGG++QR+ +ARAL DA I L D+P +
Sbjct: 443 AALERVGLADWLRALPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHL 502
Query: 774 DAHTGSHLFKEVLLGLLNSKTVLYVTHQ 801
DA T L E LL L+ +TV+ +TH
Sbjct: 503 DAETADELL-EDLLAALSGRTVVLITHH 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 2e-28
Identities = 66/259 (25%), Positives = 121/259 (46%), Gaps = 24/259 (9%)
Query: 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1307
I++R+L +Y L G+S + G++G G+GK+TL++ L +++P +G+IL
Sbjct: 5 IEVRNLTKKYGGDKT-ALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEIL 63
Query: 1308 IDGIDISLIGLHDLRTRLSIIPQDPVMFEG-TVRSNVD-------PLEEYTDEQIWEALD 1359
+ G D+ +R R+ +PQ+P ++ TVR N++ +E +E+I E L+
Sbjct: 64 VLGYDVV-KEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLE 122
Query: 1360 KCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTAT 1419
L D+ KK L S G +Q + + LL ++L+LDE T+ +D +
Sbjct: 123 LFGLEDKANKKVRTL-----------SGGMKQRLSIALALLHDPELLILDEPTSGLDPES 171
Query: 1420 DNLIQQSLRQHFSD--CTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLENKSSS 1476
I + LR+ + T++ H + + D V++L+ G I +P +L E
Sbjct: 172 RREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFGGK 231
Query: 1477 FSQLVAEYTQRSSSSLAGN 1495
+ + L G
Sbjct: 232 GVIELEPERLELAELLEGL 250
|
Length = 293 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 6e-28
Identities = 58/211 (27%), Positives = 89/211 (42%), Gaps = 58/211 (27%)
Query: 1250 LRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILID 1309
+ +L RY L +S T + +VG GSGKSTL++ + +++P +G+ILID
Sbjct: 2 IENLSFRYGGR--TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILID 59
Query: 1310 GIDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRK 1369
G DI+ + L +LR R+ +P QL
Sbjct: 60 GKDIAKLPLEELRRRIGYVP--------------------------------QL------ 81
Query: 1370 KEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQ 1429
S GQRQ V L R LL +L+LDE T+ +D A+ + + LR+
Sbjct: 82 ----------------SGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRE 125
Query: 1430 HFSD-CTVITIAHRITSVID-SDMVLLLSHG 1458
+ TVI + H +D V++L G
Sbjct: 126 LAEEGRTVIIVTHDPELAELAADRVIVLKDG 156
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 1e-27
Identities = 80/241 (33%), Positives = 118/241 (48%), Gaps = 18/241 (7%)
Query: 604 DLVEKQPRGSSETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLL 663
D E P G E + I F++ + H P L+++N + G + +CG GSGKS+LL
Sbjct: 302 DGSEPVPEGRGELDVNIR--QFTYPQTDH-PALENVNFTLKPGQMLGICGPTGSGKSTLL 358
Query: 664 SCILGEVPKISG----------TLKL---CGTKAYVAQSPWIQSGKIEDNILFGK-EMDR 709
S I G L+L A V+Q+P++ S + +NI G+ + +
Sbjct: 359 SLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQ 418
Query: 710 ERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDP 769
+ V S+ D+ L G T VGERG+ LSGGQKQRI IARAL +A+I + DD
Sbjct: 419 QEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDA 478
Query: 770 FSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVI 829
SAVD T + L +TV+ H++ L A +LV++ G I Q G + +
Sbjct: 479 LSAVDGRTEHQILHN-LRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLA 537
Query: 830 N 830
Sbjct: 538 Q 538
|
Length = 569 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 4e-27
Identities = 68/226 (30%), Positives = 108/226 (47%), Gaps = 41/226 (18%)
Query: 619 EIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLK 678
E+ D S+ +P L+D++ +V G +A+ G G+GKS+LL ILG + SG+++
Sbjct: 1 EVEDLTVSYG---GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIR 57
Query: 679 LCGTK--------AYVAQSPWIQSG---KIEDNIL--------FGKEMDRERYNAVLDAC 719
+ G YV Q I + D +L + + + V +A
Sbjct: 58 VFGKPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEA- 116
Query: 720 SLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGS 779
LE+ + + D+ + GE LSGGQ+QR+ +ARAL QD D+ L D+PF+ VD T
Sbjct: 117 -LER-VGLSELADRQI-GE----LSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKT-- 167
Query: 780 HLFKEVLLGLLNS-----KTVLYVTHQVE-FLPAADLVLVIKDGKI 819
+E + LL T+L VTH + L D VL++ +
Sbjct: 168 ---QEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRTVV 210
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 9e-27
Identities = 59/202 (29%), Positives = 88/202 (43%), Gaps = 47/202 (23%)
Query: 619 EIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLK 678
EI + +F + L +++L + G VA+ G GSGKS+LL I G + SG +
Sbjct: 1 EIENLSFRYG---GRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEIL 57
Query: 679 LCGTKAYVAQSPWIQSGKIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGE 738
+ G + LE+ + + Q
Sbjct: 58 IDGKD--------------------------------IAKLPLEELRRRIGYVPQ----- 80
Query: 739 RGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNS-KTVLY 797
LSGGQ+QR+ +ARAL + D+ L D+P S +D + E+L L +TV+
Sbjct: 81 ----LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASR-ERLLELLRELAEEGRTVII 135
Query: 798 VTHQVEFL-PAADLVLVIKDGK 818
VTH E AAD V+V+KDGK
Sbjct: 136 VTHDPELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 109 bits (276), Expect = 1e-26
Identities = 75/210 (35%), Positives = 96/210 (45%), Gaps = 49/210 (23%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK--------AYVA 687
L+DINL V G VA+ G G GKS+LL I G SG + L G YV
Sbjct: 19 LEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVF 78
Query: 688 QS----PWIQSGKIEDNILFG-------KEMDRERYNAVLDACSLEKDLEILSFGD---- 732
Q PW+ + DN+ G K RER +L+ L F D
Sbjct: 79 QEDALLPWL---TVLDNVALGLELRGKSKAEARERAKELLELVGLAG------FEDKYPH 129
Query: 733 QTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL-- 790
Q LSGG +QR+ IARAL + L D+PF A+DA T L ++ LL L
Sbjct: 130 Q---------LSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREEL-QDELLRLWEE 179
Query: 791 NSKTVLYVTHQVE---FLPAADLVLVIKDG 817
KTVL VTH V+ +L AD V+V+ +
Sbjct: 180 TRKTVLLVTHDVDEAVYL--ADRVVVLSNR 207
|
Length = 248 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 2e-26
Identities = 64/205 (31%), Positives = 109/205 (53%), Gaps = 16/205 (7%)
Query: 633 NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG---TK------ 683
P LK+I+ + G +V + G GSGKSSLL + V SG++ + G +K
Sbjct: 17 PPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDL 76
Query: 684 ----AYVAQSPWIQSGKIEDNI-LFGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGE 738
+ + Q P + SG I N+ FG+ D E + A L+ L++ +E L G TVV E
Sbjct: 77 RSRISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQA-LERVGLKEFVESLPGGLDTVVEE 135
Query: 739 RGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYV 798
G NLS GQ+Q + +ARAL + + I + D+ ++VD T + + ++ + TVL +
Sbjct: 136 GGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALI-QKTIREAFKDCTVLTI 194
Query: 799 THQVEFLPAADLVLVIKDGKITQAG 823
H+++ + +D +LV+ G++ +
Sbjct: 195 AHRLDTIIDSDRILVLDKGRVVEFD 219
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 2e-26
Identities = 94/326 (28%), Positives = 168/326 (51%), Gaps = 29/326 (8%)
Query: 536 TFVSVITFGTCILLKVPLESGKVLSAIATFRLLQILIYKLPAIISMTIQTKVSLQRIASF 595
T ++++ G ++ K L G+V++ + +LI +L +++ Q ++ ++ F
Sbjct: 253 TMLAILVLGAALVQKGQLRVGEVVAFVG---FATLLIGRLDQVVAFINQVFMAAPKLEEF 309
Query: 596 FCLDELQPDLVEKQ---PRGSSETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVC 652
F +++ PD+ + G + A+E D +FS+D S ++D++ + G VA+
Sbjct: 310 FEVEDAVPDVRDPPGAIDLGRVKGAVEFDDVSFSYDNSR--QGVEDVSFEAKPGQTVAIV 367
Query: 653 GTVGSGKSSLLSCILGEV--PKISGTLKLCGTK-------------AYVAQSPWIQSGKI 697
G G+GKS+L++ +L V P+ SG + + GT A V Q + + I
Sbjct: 368 GPTGAGKSTLIN-LLQRVFDPQ-SGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSI 425
Query: 698 EDNILFGKE--MDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIAR 755
EDNI G+ D E A A + + +E G TVVGERG LSGG++QR+ IAR
Sbjct: 426 EDNIRVGRPDATDEEMRAAAERAQAHDF-IERKPDGYDTVVGERGRQLSGGERQRLAIAR 484
Query: 756 ALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIK 815
AL +D I + D+ SA+D T + + K L L+ +T + H++ + AD +LV
Sbjct: 485 ALLKDPPILILDEATSALDVETEAKV-KAALDELMKGRTTFIIAHRLSTVRNADRILVFD 543
Query: 816 DGKITQAGKYTDVINSGTDFMELVDA 841
+G++ ++G + +++ G F L+ A
Sbjct: 544 NGRVVESGSFDELVARGGRFAALLRA 569
|
Length = 588 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 3e-26
Identities = 64/222 (28%), Positives = 107/222 (48%), Gaps = 21/222 (9%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQ-- 693
L +I+L++ G V + G GSGKS+L I +G + + G +A W++
Sbjct: 18 LDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQ 77
Query: 694 -----------SGKIEDNILFGKE-MDRERYNAVLDACSLEKDLEI---LSFGDQTVVGE 738
+ I DNI M ER V++A L + L G T+VGE
Sbjct: 78 VGVVLQENVLFNRSIRDNIALADPGMSMER---VIEAAKLAGAHDFISELPEGYDTIVGE 134
Query: 739 RGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYV 798
+G LSGGQ+QRI IARAL + I +FD+ SA+D + H + + +TV+ +
Sbjct: 135 QGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYES-EHAIMRNMHDICAGRTVIII 193
Query: 799 THQVEFLPAADLVLVIKDGKITQAGKYTDVINSGTDFMELVD 840
H++ + AD ++V++ G+I + G + +++ + L
Sbjct: 194 AHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYLYQ 235
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 4e-26
Identities = 51/273 (18%), Positives = 101/273 (36%), Gaps = 9/273 (3%)
Query: 926 GVLVPFILLAQTLFQILQIASNYWIAWATPASKDIKPRVTGSMLLIVFVALAFGSSFCIL 985
+L L L ++ + R + L I+ +A+ +
Sbjct: 8 LILAGATALVFPLL------LGRFLDSLI--DGNGDERSSLISLAILLIAVGVLQGLLLQ 59
Query: 986 ARSTLLATAGYKTATLLFNKMHYCIFRAPMSFFDATPSGRIINRASTDQSAVDLSIPALI 1045
L G + LF + I PMSFFD G + +R + D S + + +
Sbjct: 60 GSFYLGERLGQRIRKRLFRALLRQILGLPMSFFDTNSVGELTSRLTNDVSKIRDGLGDKL 119
Query: 1046 GSFAFSIIRVLGVIGVMSLVAWQVFIVFIPVIATCIWYQQYYISSARELSRLVGVCKAPL 1105
G F S+ V+G VM W++ +V + ++ I R+L+R A
Sbjct: 120 GLFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVLAKKLRKLNRKEQKAYAKA 179
Query: 1106 IQHFAETVSGSTTIRSFDQESRFIDTNMELMDGYSRPTFHVAAAMEWLGFRLDMLSNITF 1165
E++SG T+++F +E ++ + ++ + A ++S +++
Sbjct: 180 GSVAEESLSGIRTVKAFGREEYELERYDKALEDAEKAGIKKAITAGLSFGITQLISYLSY 239
Query: 1166 AFSLVF-LISIPKGFIDPAIAGLAVTYGLTLNN 1197
A +L F + G + ++ GL L+
Sbjct: 240 ALALWFGAYLVISGGLSVGTVFAFLSLGLQLSG 272
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 5e-26
Identities = 57/215 (26%), Positives = 101/215 (46%), Gaps = 39/215 (18%)
Query: 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1307
+ + ++ Y VL+ +S +K ++GR+GSGKSTL+Q L ++P G+I
Sbjct: 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEIT 60
Query: 1308 IDGIDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEV 1367
+DG+ +S + L + +S++ Q P +F+ T+R+N+
Sbjct: 61 LDGVPVSDLE-KALSSLISVLNQRPYLFDTTLRNNL------------------------ 95
Query: 1368 RKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSL 1427
G +S G+RQ + L R+LL+ I++LDE T +D T+ + +
Sbjct: 96 --------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLI 141
Query: 1428 RQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 1462
+ D T+I I H +T + D +L L +G I
Sbjct: 142 FEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIM 176
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 106 bits (268), Expect = 7e-26
Identities = 68/216 (31%), Positives = 97/216 (44%), Gaps = 40/216 (18%)
Query: 633 NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK--------- 683
L D++L V G +A+ G G GK++LL I G SG + + G
Sbjct: 13 VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERR 72
Query: 684 --AYVAQS----PWIQSGKIEDNILFG-------KEMDRERYNAVLDACSLEKDLEILSF 730
V Q P + + +NI FG K R R +L+ LE L +
Sbjct: 73 NIGMVFQDYALFPHL---TVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLN--RY 127
Query: 731 GDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL 790
+ LSGGQ+QR+ +ARAL ++ + L D+P SA+DA L +E L L
Sbjct: 128 PHE---------LSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREE-LKELQ 177
Query: 791 NS--KTVLYVTH-QVEFLPAADLVLVIKDGKITQAG 823
T +YVTH Q E L AD + V+ +G+I Q G
Sbjct: 178 RELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 8e-26
Identities = 67/242 (27%), Positives = 119/242 (49%), Gaps = 29/242 (11%)
Query: 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1307
I+ +L RY L+ +S ++ ++G GSGKSTL++ L +++P +G++L
Sbjct: 4 IEAENLSFRYPGRKA-ALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVL 62
Query: 1308 IDGIDISLI-GLHDLRTRLSIIPQDPVM--FEGTVRSNVD--------PLEEYTDEQIWE 1356
+DG+D S L +LR ++ ++ Q+P F TV V P EE +E++ E
Sbjct: 63 VDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREE-IEERVAE 121
Query: 1357 ALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVD 1416
AL+ L + + + L S GQ+Q V + VL +IL+LDE TA +D
Sbjct: 122 ALELVGLEELLDRPPFNL-----------SGGQKQRVAIAGVLAMGPEILLLDEPTAGLD 170
Query: 1417 T-ATDNLIQ--QSLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLEN 1472
L++ + L++ T+I + H + V++ +D V++L G I P ++ +
Sbjct: 171 PKGRRELLELLKKLKEE-GGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229
Query: 1473 KS 1474
Sbjct: 230 AE 231
|
Length = 235 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 1e-25
Identities = 67/221 (30%), Positives = 117/221 (52%), Gaps = 5/221 (2%)
Query: 1254 QVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDI 1313
Q Y L ++ T + GI G TGSGKSTL+ + R + + G I I +
Sbjct: 320 QFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPL 379
Query: 1314 SLIGLHDLRTRLSIIPQDPVMFEGTVRSNV---DPLEEYTDEQIWEALDKCQLGDEVRKK 1370
+ + L R+RL+++ Q P +F TV +N+ P + T ++I + D++ +
Sbjct: 380 TKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRP--DATQQEIEHVARLASVHDDILRL 437
Query: 1371 EGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQH 1430
D++V E G S GQ+Q + + R LL +IL+LD+A ++VD T++ I +LRQ
Sbjct: 438 PQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQW 497
Query: 1431 FSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLE 1471
TVI AHR++++ ++ +L++ HG I + + +L +
Sbjct: 498 GEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQ 538
|
Length = 569 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 2e-25
Identities = 72/219 (32%), Positives = 108/219 (49%), Gaps = 24/219 (10%)
Query: 631 SHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK------- 683
P LK I+ + G + + G GSGKS+L ++G P SG+++L G
Sbjct: 347 QKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDRE 406
Query: 684 ------AYVAQSPWIQSGKIEDNIL-FGKEMDRERYNAVLDACSLEK--DLEILSF--GD 732
Y+ Q + G I +NI FG+E D E V++A L +L IL G
Sbjct: 407 QLGRHIGYLPQDVELFDGTIAENIARFGEEADPE---KVIEAARLAGVHEL-ILRLPQGY 462
Query: 733 QTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNS 792
T +GE G LSGGQ+QRI +ARALY D + + D+P S +D+ G +L
Sbjct: 463 DTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDS-EGEAALAAAILAAKAR 521
Query: 793 K-TVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVIN 830
TV+ + H+ L + D +LV++DG+I G +V+
Sbjct: 522 GGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLA 560
|
Length = 580 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 2e-25
Identities = 70/239 (29%), Positives = 113/239 (47%), Gaps = 32/239 (13%)
Query: 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1307
I+LR L + VL+G+ + I+G +GSGKSTL++ + ++ P +G++L
Sbjct: 1 IELRGLTKSFGGR--TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVL 58
Query: 1308 IDGIDI---SLIGLHDLRTRLSIIPQDPVMFEG-TVRSNVD-PLEEYT-------DEQIW 1355
IDG DI S L+ LR R+ ++ Q +F+ TV NV PL E+T E +
Sbjct: 59 IDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVL 118
Query: 1356 EALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASV 1415
E L+ L +L S G ++ V L R L ++L+ DE TA +
Sbjct: 119 EKLEAVGLRGAEDLYPAEL-----------SGGMKKRVALARALALDPELLLYDEPTAGL 167
Query: 1416 D----TATDNLIQQSLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKL 1469
D D+LI +SL++ T I + H + + +D + +L G I +P +L
Sbjct: 168 DPIASGVIDDLI-RSLKKEL-GLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEEL 224
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 3e-25
Identities = 74/207 (35%), Positives = 99/207 (47%), Gaps = 49/207 (23%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK--------AYVA 687
L+DI+L V G VA+ G G GKS+LL I G SG + + G YV
Sbjct: 20 LEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVF 79
Query: 688 QS----PWIQSGKIEDNILFGKEMD-------RERYNAVLDACSLEKDLEILSFGD---- 732
Q PW+ + DN+ G E+ RER +L+ L F +
Sbjct: 80 QQDALLPWL---TVLDNVALGLELQGVPKAEARERAEELLELVGLSG------FENAYPH 130
Query: 733 QTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNS 792
Q LSGG +QR+ +ARAL D D+ L D+PFSA+DA T L +E LL +
Sbjct: 131 Q---------LSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQL-QEELLDIWRE 180
Query: 793 --KTVLYVTHQVE---FLPAADLVLVI 814
KTVL VTH ++ FL AD V+V+
Sbjct: 181 TGKTVLLVTHDIDEAVFL--ADRVVVL 205
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 5e-25
Identities = 71/242 (29%), Positives = 114/242 (47%), Gaps = 38/242 (15%)
Query: 614 SETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKI 673
IE+ + S+ + P L+DI+L V G A+ G G+GKS+LL ILG +
Sbjct: 1 MMPMIEVENLTVSYG---NRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPS 57
Query: 674 SGTLKLCGTK----------AYVAQSPWIQSG---KIED--------NILFGKEMDRERY 712
SG +K+ G YV Q + ++D + + ++++
Sbjct: 58 SGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDK 117
Query: 713 NAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSA 772
V +A LE+ + + D+ + GE LSGGQKQR+ +ARAL Q+ D+ L D+PF+
Sbjct: 118 EKVDEA--LER-VGMEDLRDRQI-GE----LSGGQKQRVLLARALAQNPDLLLLDEPFTG 169
Query: 773 VDAHTGSHLFKEVLLGLLNS--KTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYTDVI 829
VD ++ LL L KTVL VTH + + A D V+ + + +G +V+
Sbjct: 170 VDVAGQKEIYD--LLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEEVL 226
Query: 830 NS 831
Sbjct: 227 TE 228
|
Length = 254 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 6e-25
Identities = 68/222 (30%), Positives = 100/222 (45%), Gaps = 36/222 (16%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQ 693
LKD++L++ G RV + G GSGKS+LL + G + SG + + G +S
Sbjct: 18 AALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLEL 77
Query: 694 SGKI----------------EDNILFG-------KEMDRERYNAVLDACSLEKDLEILSF 730
K+ ED + FG +E ER L+ LE+ L+ F
Sbjct: 78 RQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPF 137
Query: 731 GDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVL-LGL 789
NLSGGQKQR+ IA L +I L D+P + +D L + + L
Sbjct: 138 -----------NLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKE 186
Query: 790 LNSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYTDVIN 830
KT++ VTH +E + AD V+V+ DGKI G ++ N
Sbjct: 187 EGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFN 228
|
Length = 235 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 7e-25
Identities = 73/242 (30%), Positives = 126/242 (52%), Gaps = 22/242 (9%)
Query: 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQI 1306
+I+ ++ V Y+ +L+ IS F G IVG +G+GKSTLI+ + R+++P G I
Sbjct: 3 EIEFKE--VSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSI 60
Query: 1307 LIDGIDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNVD--PL---EEYTDEQIWEALDKC 1361
LIDG+DI I + DLR ++ ++ Q P +FEGTV+ N++ P+ E+ D + + L
Sbjct: 61 LIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYY--LSIV 118
Query: 1362 QLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDN 1421
L E ++ K N S G+ Q V + R L ++L+LDE T+++D +
Sbjct: 119 GLNKEYATRDVK----------NLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTE 168
Query: 1422 LIQQSLR--QHFSDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLENKSSSFS 1478
+I++ + ++ + TVI I H + D L+ G++ EY N + +
Sbjct: 169 IIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVT 228
Query: 1479 QL 1480
+L
Sbjct: 229 KL 230
|
Length = 241 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 104 bits (263), Expect = 8e-25
Identities = 66/241 (27%), Positives = 114/241 (47%), Gaps = 28/241 (11%)
Query: 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1307
+++ +L Y +L +S + P + TGI+G GSGKSTL++ L +++P +G++L
Sbjct: 3 LEVENLSFGYGGK--PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVL 60
Query: 1308 IDGIDISLIGLHDLRTRLSIIPQDPVMFEG-TVRSNV-----------DPLEEYTDEQIW 1355
+DG DI+ + +L +L+ +PQ P G TV V + +E +
Sbjct: 61 LDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVE 120
Query: 1356 EALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASV 1415
EAL+ L + +L S G+RQ V + R L + IL+LDE T+ +
Sbjct: 121 EALELLGLEHLADRPVDEL-----------SGGERQRVLIARALAQETPILLLDEPTSHL 169
Query: 1416 DTATDNLIQQSLRQ--HFSDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLEN 1472
D A + + LR TV+ + H + +D ++LL G I +P ++L
Sbjct: 170 DIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLTE 229
Query: 1473 K 1473
+
Sbjct: 230 E 230
|
Length = 258 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 1e-24
Identities = 68/231 (29%), Positives = 101/231 (43%), Gaps = 50/231 (21%)
Query: 633 NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK--------- 683
P L D++ + G + G GSGKS+LL C+ G + SG + L G
Sbjct: 15 KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKEL 74
Query: 684 ----AYVAQSPWIQSG-KIEDNILFG-----------KEMDRERYNAVLDACSLEKDLEI 727
AYV QSP G + + +L G + D E L+ LE
Sbjct: 75 AKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLE----- 129
Query: 728 LSFGDQTVVGERGIN-LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVL 786
+ +R ++ LSGG++QR+ IARAL Q+ I L D+P S +D H + +
Sbjct: 130 -------HLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIA---HQIE--V 177
Query: 787 LGLLNS------KTVLYVTHQVEF-LPAADLVLVIKDGKITQAGKYTDVIN 830
L LL TV+ V H + AD ++++KDGKI G +V+
Sbjct: 178 LELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLT 228
|
Length = 258 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 1e-24
Identities = 68/222 (30%), Positives = 97/222 (43%), Gaps = 42/222 (18%)
Query: 633 NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK--------- 683
LKD+NL + G V + G G GKS+LL I G SG + + G
Sbjct: 16 FEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKR 75
Query: 684 --AYVAQS----PWIQSGKIEDNILFG-------KEMDRERYNAVLDACSLEKDLEILSF 730
A V Q+ P + +NI FG K +R V LE L
Sbjct: 76 GIAMVFQNYALYP---HMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLN---- 128
Query: 731 GDQTVVGERGIN-LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL 789
R LSGGQ+QR+ +ARAL + ++L D+P S +DA + + + L
Sbjct: 129 --------RKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLM-RSEIKKL 179
Query: 790 LN--SKTVLYVTH-QVEFLPAADLVLVIKDGKITQAGKYTDV 828
T +YVTH QVE + AD ++V+ DG+I Q G ++
Sbjct: 180 HERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLEL 221
|
Length = 338 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 101 bits (255), Expect = 2e-24
Identities = 58/204 (28%), Positives = 84/204 (41%), Gaps = 54/204 (26%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK------------ 683
L D++L + G V + G G+GKS+LL + G + SG + L G
Sbjct: 15 LDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARK 74
Query: 684 -AYVAQSPWIQSGKIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGIN 742
AYV Q L+ L + D R N
Sbjct: 75 IAYVPQ--------------------------ALEL------LGLAHLAD------RPFN 96
Query: 743 -LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVL-LGLLNSKTVLYVTH 800
LSGG++QR+ +ARAL Q+ I L D+P S +D L + + L KTV+ V H
Sbjct: 97 ELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLH 156
Query: 801 QVEF-LPAADLVLVIKDGKITQAG 823
+ AD V+++KDG+I G
Sbjct: 157 DLNLAARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 4e-24
Identities = 71/213 (33%), Positives = 108/213 (50%), Gaps = 20/213 (9%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG------------ 681
PTL+ I+ + G +A+ G GSGKS+L I+G P SG+++L G
Sbjct: 332 PTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFG 391
Query: 682 -TKAYVAQSPWIQSGKIEDNIL-FGKEMDRERYNAVLDACSLEKDLE-ILSF--GDQTVV 736
Y+ Q + G + +NI FG+ D E +++A L E IL G TV+
Sbjct: 392 KHIGYLPQDVELFPGTVAENIARFGENADPE---KIIEAAKLAGVHELILRLPDGYDTVI 448
Query: 737 GERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVL 796
G G LSGGQ+QRI +ARALY D + + D+P S +D L + TV+
Sbjct: 449 GPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVV 508
Query: 797 YVTHQVEFLPAADLVLVIKDGKITQAGKYTDVI 829
+TH+ L D +LV++DG+I + G+ +V+
Sbjct: 509 VITHRPSLLGCVDKILVLQDGRIARFGERDEVL 541
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 7e-24
Identities = 67/260 (25%), Positives = 117/260 (45%), Gaps = 39/260 (15%)
Query: 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1307
I++ +L V Y VL IS + + T ++G G+GKSTL++ + +++P++G+I
Sbjct: 5 IEVENLTVSYGNRP--VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIK 62
Query: 1308 IDGIDISLIGLHDLRTRLSIIPQD-------PV-------MFEGTVRSNVDPLEEYTDEQ 1353
I G + R R+ +PQ P+ + + L + E+
Sbjct: 63 IFGKPVRKR---RKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEK 119
Query: 1354 IWEALDKCQLGDEVRKKE-GKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEAT 1412
+ EAL++ + D +R ++ G+L S GQ+Q V L R L + +L+LDE
Sbjct: 120 VDEALERVGMED-LRDRQIGEL-----------SGGQKQRVLLARALAQNPDLLLLDEPF 167
Query: 1413 ASVDTATDNLIQQSLRQHFSD-CTVITIAHRITSVID-SDMVLLLSHGLI-----EEYDS 1465
VD A I L++ + TV+ + H + V+ D V+ L+ LI EE +
Sbjct: 168 TGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRHLIASGPPEEVLT 227
Query: 1466 PRKLLENKSSSFSQLVAEYT 1485
L + S + +A Y
Sbjct: 228 EENLEKAFGGSLAHALAGYR 247
|
Length = 254 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 9e-24
Identities = 66/215 (30%), Positives = 96/215 (44%), Gaps = 37/215 (17%)
Query: 633 NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKA-------- 684
+ DI+L + G V + G G GK++LL I G SG + L G
Sbjct: 18 FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKR 77
Query: 685 ---YVAQSPWIQSGK-IEDNILFGKEMDR--------ERYNAVLDACSLEKDLEILSFGD 732
V QS + +E+N+ FG ++ + R L+ LE
Sbjct: 78 PIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEG--------- 128
Query: 733 QTVVGERGIN-LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLN 791
+R + LSGGQ+QR+ +ARAL + + L D+P SA+DA + KE L L
Sbjct: 129 ---FADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKE-LKELQR 184
Query: 792 S--KTVLYVTH-QVEFLPAADLVLVIKDGKITQAG 823
T +YVTH Q E L +D + V+ DG+I Q G
Sbjct: 185 ELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVG 219
|
Length = 352 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 106 bits (268), Expect = 1e-23
Identities = 71/249 (28%), Positives = 120/249 (48%), Gaps = 25/249 (10%)
Query: 600 ELQPDLV--EKQPRGSSETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGS 657
E +P++ + + ++ + + +F++ P LK ++L++ G +VA+ G G
Sbjct: 319 EQKPEVTFPTTSTAAADQVSLTLNNVSFTYP-DQPQPVLKGLSLQIKAGEKVALLGRTGC 377
Query: 658 GKSSLLSCILGEVPKISGTLKLCGT--KAY-----------VAQSPWIQSGKIEDNILFG 704
GKS+LL + G + L G Y V+Q + S + DN+L
Sbjct: 378 GKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLA 437
Query: 705 K-EMDRERYNAVLDACSLEKDLEILSFGDQ---TVVGERGINLSGGQKQRIQIARALYQD 760
E VL LEK LE D+ +GE G LSGG+++R+ IARAL D
Sbjct: 438 APNASDEALIEVLQQVGLEKLLE----DDKGLNAWLGEGGRQLSGGEQRRLGIARALLHD 493
Query: 761 ADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKIT 820
A + L D+P +DA T + E+L +KTVL +TH++ L D + V+ +G+I
Sbjct: 494 APLLLLDEPTEGLDAETERQIL-ELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQII 552
Query: 821 QAGKYTDVI 829
+ G + +++
Sbjct: 553 EQGTHQELL 561
|
Length = 574 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 99.1 bits (248), Expect = 2e-23
Identities = 48/216 (22%), Positives = 98/216 (45%), Gaps = 18/216 (8%)
Query: 1248 IDLRDLQVRYAP---HMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAG 1304
I + D + F L+ I+ P + IVG GSGKS+L+ L +E +G
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60
Query: 1305 QILIDGIDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLG 1364
+ + G ++ + Q+P + GT+R N+ + + +E+ + + C L
Sbjct: 61 SVSVPG-------------SIAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALE 107
Query: 1365 DEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTAT-DNLI 1423
++ +++ E G N S GQ+Q + L R + I +LD+ ++VD ++
Sbjct: 108 PDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIF 167
Query: 1424 QQSLRQHFSDC-TVITIAHRITSVIDSDMVLLLSHG 1458
+ + + T I + H++ + +D +++L +G
Sbjct: 168 ENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNG 203
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 99.8 bits (250), Expect = 2e-23
Identities = 68/221 (30%), Positives = 109/221 (49%), Gaps = 24/221 (10%)
Query: 1250 LRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILID 1309
L++L Y L IS T + IVG GSGKSTL++ L ++ P +G++L+D
Sbjct: 2 LKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVD 61
Query: 1310 GIDISLIGLHDLRTRLSIIPQDP--VMFEGTVRSNV--------DPLEEYTDEQIWEALD 1359
G D++ + L +LR ++ ++ Q+P F TV V P EE +E++ EAL+
Sbjct: 62 GKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEE-IEERVEEALE 120
Query: 1360 KCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTAT 1419
L EG D S GQ+Q V + VL IL+LDE TA +D A
Sbjct: 121 LVGL-------EGLRDRSP----FTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAG 169
Query: 1420 DNLIQQSLRQ-HFSDCTVITIAHRITSVID-SDMVLLLSHG 1458
+ + L++ T+I + H + +++ +D V++L G
Sbjct: 170 RRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDG 210
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 2e-23
Identities = 58/224 (25%), Positives = 91/224 (40%), Gaps = 45/224 (20%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK------------ 683
L ++ +V G + G G+GK++LL + G + SG + + G
Sbjct: 21 LDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRI 80
Query: 684 AYVAQS----PWIQSGKIEDNILF-------GKEMDRERYNAVLDACSLEKDLEILSFGD 732
YV Q P + + +N+ F KE ER +L+ LE
Sbjct: 81 GYVPQEPSLYPEL---TVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA------- 130
Query: 733 QTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNS 792
++ LSGG KQR+ IA AL D ++ + D+P S +D + E+L L
Sbjct: 131 ----NKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPES-RREIWELLRELAKE 185
Query: 793 --KTVLYVTHQ---VEFLPAADLVLVIKDGKITQAGKYTDVINS 831
T+L TH E L D V+++ DGKI G ++
Sbjct: 186 GGVTILLSTHILEEAEEL--CDRVIILNDGKIIAEGTPEELKEK 227
|
Length = 293 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 2e-23
Identities = 70/217 (32%), Positives = 103/217 (47%), Gaps = 32/217 (14%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-----------KA 684
LK+++L+V G + G GSGKS LL I G + SG + L G +
Sbjct: 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDIS 74
Query: 685 YVAQS----PWIQSGKIEDNILFG----KEMDRERYNAVLDACSLEKDLEILSFGDQTVV 736
YV Q+ P + + NI +G K +E VL+ + + L I ++
Sbjct: 75 YVPQNYALFPHMT---VYKNIAYGLKKRKVDKKEIERKVLE---IAEMLGIDHLLNRKPE 128
Query: 737 GERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEV-LLGLLNSKTV 795
LSGG++QR+ IARAL + I L D+PFSA+D T L +E+ + TV
Sbjct: 129 -----TLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTV 183
Query: 796 LYVTH-QVEFLPAADLVLVIKDGKITQAGKYTDVINS 831
L+VTH E AD V ++ +GK+ Q GK +V
Sbjct: 184 LHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 3e-23
Identities = 74/239 (30%), Positives = 110/239 (46%), Gaps = 23/239 (9%)
Query: 618 IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTL 677
IE D +FS+ P LK + + G VA+ G GSGKS++ + + G +
Sbjct: 479 IEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQV 538
Query: 678 KLCGTK-------------AYVAQSPWIQSGKIEDNILFG-KEMDRERYNAVLDACSLEK 723
L G A V Q P + SG + +NI +G + E A A +
Sbjct: 539 LLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHD 598
Query: 724 DLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFK 783
+ G T VGE+G LSGGQKQRI IARAL + + + D+ SA+DA
Sbjct: 599 FIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAEC------ 652
Query: 784 EVLLGLLNS---KTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVINSGTDFMELV 839
E LL S +TVL + H++ + AD +LV+K G + + G + ++ + LV
Sbjct: 653 EQLLQESRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQGCYKHLV 711
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 97.9 bits (245), Expect = 3e-23
Identities = 57/215 (26%), Positives = 97/215 (45%), Gaps = 46/215 (21%)
Query: 1249 DLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILI 1308
++ +L V Y VL +S + + GI+G G+GKSTL++TL +++P++G+IL+
Sbjct: 1 EVENLSVGYGGR--TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILL 58
Query: 1309 DGIDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVR 1368
DG D++ + +L +++ +PQ AL+ L
Sbjct: 59 DGKDLASLSPKELARKIAYVPQ--------------------------ALELLGLAH--- 89
Query: 1369 KKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVD----TATDNLIQ 1424
D E S G+RQ V L R L + IL+LDE T+ +D L++
Sbjct: 90 ----LADRPFNE----LSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLR 141
Query: 1425 QSLRQHFSDCTVITIAHRITSVID-SDMVLLLSHG 1458
+ R+ TV+ + H + +D V+LL G
Sbjct: 142 RLARER--GKTVVMVLHDLNLAARYADRVILLKDG 174
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 98.8 bits (247), Expect = 4e-23
Identities = 61/225 (27%), Positives = 102/225 (45%), Gaps = 34/225 (15%)
Query: 1252 DLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGI 1311
DL V Y H VL +S + IVG G+GKSTL++ + +++P +G I + G
Sbjct: 4 DLTVSYGGHP--VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGK 61
Query: 1312 DISLIGLHDLRTRLSIIPQDPVM---FEGTVR--------SNVDPLEEYTDEQ---IWEA 1357
+ R R+ +PQ + F +VR + + + EA
Sbjct: 62 PLE-----KERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEA 116
Query: 1358 LDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDT 1417
L++ L + ++ G+L S GQ+Q V L R L++ +L+LDE A VD
Sbjct: 117 LERVGLSELADRQIGEL-----------SGGQQQRVLLARALVQDPDLLLLDEPFAGVDP 165
Query: 1418 ATDNLIQQSLRQ-HFSDCTVITIAHRITSVIDS-DMVLLLSHGLI 1460
T I + LR+ T++ + H + V++ D VLLL+ ++
Sbjct: 166 KTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRTVV 210
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 4e-23
Identities = 67/239 (28%), Positives = 120/239 (50%), Gaps = 31/239 (12%)
Query: 614 SETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKI 673
I++ + +FS+ +S N LK+++ ++ G VA+ G GSGKS++ + G +
Sbjct: 4 KSVMIKVENVSFSYP-NSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQ 62
Query: 674 SGTLKLCGTK-------------AYVAQSPWIQ--SGKIEDNILFG---KEMDRERYNAV 715
SG +K+ G + Q+P Q +ED+I FG K++ ++ +
Sbjct: 63 SGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDI 122
Query: 716 LDACSLEKDLE-ILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVD 774
+D + + +E L Q NLSGGQKQR+ IA L + +I +FD+ S +D
Sbjct: 123 IDDLAKKVGMEDYLDKEPQ--------NLSGGQKQRVAIASVLALNPEIIIFDESTSMLD 174
Query: 775 AHTGSHLFKEVLLGLLN--SKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVINS 831
G K++++ L KT++ +TH ++ AD V+V +GK+ GK +++N+
Sbjct: 175 PK-GKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232
|
Length = 271 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 98.7 bits (247), Expect = 7e-23
Identities = 65/239 (27%), Positives = 114/239 (47%), Gaps = 36/239 (15%)
Query: 1248 IDLRDLQVRYAPH--MPFVLRGISCT-FPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAG 1304
+++++L V + L +S + GE G+VG +GSGKSTL + + +++P +G
Sbjct: 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGET-LGLVGESGSGKSTLARAILGLLKPTSG 60
Query: 1305 QILIDGIDISLIGLHDLRTR---LSIIPQDPVMFEGTVRSNVDPLEEYT-DEQIWEAL-D 1359
I+ DG D+ + + R + ++ QDP S+++P T EQI E L
Sbjct: 61 SIIFDGKDLLKLSRRLRKIRRKEIQMVFQDP-------MSSLNPR--MTIGEQIAEPLRI 111
Query: 1360 KCQLGDEVRKKEGKLDSKVT-ENGENW--------SMGQRQLVCLGRVLLKRRKILMLDE 1410
+L + +KE L V E S GQRQ V + R L K+L+ DE
Sbjct: 112 HGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADE 171
Query: 1411 ATASVDTATD----NLIQQSLRQHFSDCTVITIAHRITSVID--SDMVLLLSHGLIEEY 1463
T+++D + +L+++ L++ T++ I H + V+ +D V ++ G I E
Sbjct: 172 PTSALDVSVQAQILDLLKK-LQEEL-GLTLLFITHDL-GVVAKIADRVAVMYAGKIVEE 227
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 95.1 bits (237), Expect = 7e-23
Identities = 44/129 (34%), Positives = 70/129 (54%), Gaps = 14/129 (10%)
Query: 1289 STLIQTLFRIVEPAAGQILIDGIDI-SLIGLHDLRTRLSIIPQDP-VMFEGTVRSNVDP- 1345
STL++ + +++P +G IL+DG D L LR R+ ++ QDP + E TVR N+
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 1346 -LEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRK 1404
++ D + EAL++ L D + ++ S GQ+Q V + R LLK+ K
Sbjct: 61 LRDKEADARAEEALERVGLPDFLDREPVG----------TLSGGQKQRVAIARALLKKPK 110
Query: 1405 ILMLDEATA 1413
+L+LDE TA
Sbjct: 111 LLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 98.3 bits (246), Expect = 8e-23
Identities = 65/218 (29%), Positives = 97/218 (44%), Gaps = 49/218 (22%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILG-EVPKISGTLKLCGTKA-------- 684
LK ++L + G VA+ G GSGKS+LL+ + G + P SG +++ GT
Sbjct: 18 QALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPT-SGEVRVDGTDISKLSEKEL 76
Query: 685 ---------YVAQSP-WIQSGKIEDNILFG-------KEMDRERYNAVLDACSLEKDLEI 727
+V QS + +N+ K+ RER +L+ L L
Sbjct: 77 AAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLN- 135
Query: 728 LSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLL 787
E LSGGQ+QR+ IARAL D I L D+P +D+ TG + ++
Sbjct: 136 ------HYPSE----LSGGQQQRVAIARALANDPKIILADEPTGNLDSETG-----KEVM 180
Query: 788 GLLNS------KTVLYVTHQVEFLPAADLVLVIKDGKI 819
LL T++ VTH E AD ++ ++DGKI
Sbjct: 181 ELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 9e-23
Identities = 62/224 (27%), Positives = 103/224 (45%), Gaps = 10/224 (4%)
Query: 1246 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQ 1305
G + + ++ + LRGIS + + I+G +GSGKSTL + + I P +G
Sbjct: 315 GHLSVENVTIVPPGGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGS 374
Query: 1306 ILIDGIDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNVDPLEEYTD-EQIWEALDKCQLG 1364
+ +DG D+ + +PQD +F GTV N+ E D E+I EA +
Sbjct: 375 VRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVH 434
Query: 1365 DEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQ 1424
+ + + D+ + G S GQRQ + L R L K+++LDE +++D +
Sbjct: 435 ELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGE---- 490
Query: 1425 QSLRQHFSD-----CTVITIAHRITSVIDSDMVLLLSHGLIEEY 1463
Q+L TV+ I HR + + D +L+L G I +
Sbjct: 491 QALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARF 534
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 98.3 bits (245), Expect = 1e-22
Identities = 58/216 (26%), Positives = 102/216 (47%), Gaps = 15/216 (6%)
Query: 618 IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTL 677
++ + F++ L+D++ + G A+ G GSGKS++++ + G +
Sbjct: 12 VKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQV 71
Query: 678 KLCGTK-------------AYVAQSPWIQSGKIEDNILFG-KEMDRERYNAVLDACSLEK 723
L G + V Q P + + ++DNI +G + E
Sbjct: 72 LLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHS 131
Query: 724 DLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFK 783
+ L+ G T VGE+G LSGGQKQR+ IARAL ++ + + D+ SA+DA + +
Sbjct: 132 FISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAES-EQQVQ 190
Query: 784 EVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKI 819
+ L +TVL + H++ + AD +LV+ G+I
Sbjct: 191 QALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 1e-22
Identities = 78/322 (24%), Positives = 151/322 (46%), Gaps = 21/322 (6%)
Query: 536 TFVSVITFGTCILLKVPLESGKVLSAIATFRLLQILIYKLPAIISMTIQTKVSLQRIASF 595
+ + ++ GT +++K L G+V++ I +LI +L + Q + ++ F
Sbjct: 253 SMMCILVIGTVLVIKGELSVGEVIAFIG---FANLLIGRLDQMSGFITQIFEARAKLEDF 309
Query: 596 FCLDELQPDLVEKQPRGS-SETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGT 654
F L++ E + + +++ ++ + + D++ + G VA+ G
Sbjct: 310 FDLEDSVFQREEPADAPELPNVKGAVEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGP 369
Query: 655 VGSGKSSLLSCILGEVPKISGTLKLCGTK-------------AYVAQSPWIQSGKIEDNI 701
G+GK++L++ + G + + G A V Q + + I +NI
Sbjct: 370 TGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENI 429
Query: 702 LFGKE--MDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQ 759
G+E D E Y A A + + S G T+VGERG LSGG++QR+ IARA+ +
Sbjct: 430 RLGREGATDEEVYEAA-KAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILK 488
Query: 760 DADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKI 819
+A I + D+ SA+D T + + K + L ++T + H++ + ADLVL + G++
Sbjct: 489 NAPILVLDEATSALDVETEARV-KNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRL 547
Query: 820 TQAGKYTDVINSGTDFMELVDA 841
+ G + ++I F +L+
Sbjct: 548 IEKGSFQELIQKDGRFYKLLRR 569
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 99.7 bits (249), Expect = 1e-22
Identities = 75/273 (27%), Positives = 117/273 (42%), Gaps = 51/273 (18%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK------------ 683
+ D+NL + G + + G GSGK++ L I + SG + + G
Sbjct: 17 VDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRK 76
Query: 684 -AYVAQSPWIQSG-----KIEDNILF-------GKEMDRERYNAVLDACSLEKDLEILSF 730
YV Q Q G + +NI KE ++R + +LD L+ +
Sbjct: 77 IGYVIQ----QIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRY 132
Query: 731 GDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVL---- 786
+ LSGGQ+QR+ +ARAL D I L D+PF A+D T L +E+
Sbjct: 133 PHE---------LSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQK 183
Query: 787 -LGLLNSKTVLYVTHQV-EFLPAADLVLVIKDGKITQAGKYTDVI-NSGTDFME-LVDAH 842
LG KT+++VTH + E L AD + V+ G+I Q +++ N DF+E
Sbjct: 184 ELG----KTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPANDFVEDFFGES 239
Query: 843 KQALSTLDSIEGRPLSEKGS-ANGENDGTSATD 874
++ L L + +G A+GE D
Sbjct: 240 ERGLRLLSLVSVADAVRRGEPADGEPLLEGFVD 272
|
Length = 309 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 2e-22
Identities = 139/590 (23%), Positives = 236/590 (40%), Gaps = 62/590 (10%)
Query: 285 GLTTLKLIKAMFRSVWKDVLLTALVAIVCTLATYVGPYLIDTLVQYL--SGKRDFENEGY 342
L L++ R +D+L + ++ TL + P L+ R +
Sbjct: 120 ALGLRDLLRFALRGARRDLLAILAMGLLGTLLGMLVPIATGILIGTAIPDADRSLLVQIA 179
Query: 343 ALVSAFCVAKLVECLCQRFFVFRLEQLGIRLRAALIAMIYNKGLKLSSQAKQGNTSGEII 402
+ A V L Q V RLE R+ A+L A ++++ L+L + ++G++
Sbjct: 180 LALLAAAVGAAAFQLAQSLAVLRLET---RMDASLQAAVWDRLLRLPVSFFRQYSTGDLA 236
Query: 403 N-FMTVDAERVAELSWYIHDPWLFLFEVALSF-LILYKSLGIASVAAFFGTVIFMLVNVP 460
+ M + R LS L L+ L+ Y S +A VA V + V +
Sbjct: 237 SRAMGISQIRRI-LSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAVALALVA-IAVTLV 294
Query: 461 LSTVQEKFQNELMKSKDERMKATSEILRNMRILKLQGWELKFLSKTIDLRKSESGWLKRC 520
L +Q + + L++ + T +++ + L++ G E + ++ W K
Sbjct: 295 LGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFAR----------WAK-- 342
Query: 521 LYTSSITSF-----------VFWCA-PTFVSVITFGTCILLK--VPLESGKVLSAIATFR 566
L++ VF P S F I L L G L+ F
Sbjct: 343 LFSRQRKLELSAQRIENLLTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFG 402
Query: 567 LLQILIYKLPAIISMTIQTKVSLQRIASFFCLDELQPDLVEKQPRGSSETAIEIADGNFS 626
+ +L + + +R L+ L K G AIE+ F
Sbjct: 403 SFSGAVTQLSNTLISILAVIPLWERAKPI--LEALPEVDEAKTDPGKLSGAIEVDRVTFR 460
Query: 627 WDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILG-EVPKISGTL-------- 677
+ L D++L++ G VA+ G GSGKS+LL +LG E P+ SG++
Sbjct: 461 YRPDG-PLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE-SGSVFYDGQDLA 518
Query: 678 --------KLCGTKAYVAQSPWIQSGKIEDNILFGKEMDRERYNAVLDACSLEKDLEILS 729
+ G V Q+ + SG I +NI G + + L +D+ +
Sbjct: 519 GLDVQAVRRQLGV---VLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMP 575
Query: 730 FGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL 789
G TV+ E G LSGGQ+QR+ IARAL + I LFD+ SA+D T + + + L
Sbjct: 576 MGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSES--LER 633
Query: 790 LNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVINSGTDFMELV 839
L T + + H++ + AD + V+ G++ Q G Y +++ F +L
Sbjct: 634 LKV-TRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAREGLFAQLA 682
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 97.6 bits (244), Expect = 2e-22
Identities = 63/227 (27%), Positives = 101/227 (44%), Gaps = 63/227 (27%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK------------ 683
LKD++L + G VA+ G G+GKS+LL C+ G V SG++ + GT
Sbjct: 17 LKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQL 76
Query: 684 ----AYVAQSPWIQSGKIE-----DNILFGK---------------EMDRERYNAVLDAC 719
+ Q + IE +N+L G+ + +++R A
Sbjct: 77 RRQIGMIFQQFNL----IERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQR------AL 126
Query: 720 SLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVD---AH 776
+ + + +L Q R LSGGQ+QR+ IARAL Q + L D+P +++D +
Sbjct: 127 AALERVGLLDKAYQ-----RADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSR 181
Query: 777 TGSHLFKEVLLGLLNS---KTVLYVTHQVEF-LPAADLVLVIKDGKI 819
L K +N TV+ HQV+ AD ++ +KDG+I
Sbjct: 182 QVMDLLKR-----INREEGITVIVSLHQVDLAREYADRIVGLKDGRI 223
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 96.4 bits (241), Expect = 3e-22
Identities = 65/217 (29%), Positives = 98/217 (45%), Gaps = 42/217 (19%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILG-EVPKISGTLKLCGTK--------- 683
LKD+NL++ G VA+ G GSGKS+LL+ + G + P SG + + G
Sbjct: 19 EALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPT-SGEVLINGKDLTKLSEKEL 77
Query: 684 --------AYVAQS-PWIQSGKIEDNILFG-------KEMDRERYNAVLDACSLEKDLEI 727
+V Q+ + + +N+ + +L+ LE L
Sbjct: 78 AKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRL-- 135
Query: 728 LSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLL 787
+ E LSGGQ+QR+ IARAL + I L D+P +D+ T + + LL
Sbjct: 136 ----LKKKPSE----LSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLE--LL 185
Query: 788 GLLNS---KTVLYVTHQVEFLPAADLVLVIKDGKITQ 821
LN KT++ VTH E AD V+ +KDGKI +
Sbjct: 186 RELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222
|
Length = 226 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 95.1 bits (237), Expect = 4e-22
Identities = 56/206 (27%), Positives = 97/206 (47%), Gaps = 28/206 (13%)
Query: 618 IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTL 677
+ I + +FS+ LK+++L++ G ++A+ G GSGKS+LL + G++ G +
Sbjct: 1 LSINNVSFSYP-EQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEI 59
Query: 678 KLCGTKAYVAQSPWIQSGKIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVG 737
L G +E + +VL+ F D T+
Sbjct: 60 TLDGVPV----------SDLEKAL--------SSLISVLNQ-------RPYLF-DTTLRN 93
Query: 738 ERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLY 797
G SGG++QR+ +AR L QDA I L D+P +D T L ++ +L KT+++
Sbjct: 94 NLGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLL-SLIFEVLKDKTLIW 152
Query: 798 VTHQVEFLPAADLVLVIKDGKITQAG 823
+TH + + D +L +++GKI G
Sbjct: 153 ITHHLTGIEHMDKILFLENGKIIMQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 94.4 bits (236), Expect = 4e-22
Identities = 52/186 (27%), Positives = 88/186 (47%), Gaps = 30/186 (16%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSG 695
L DI+L V G + G G+GK++L+ ILG + SG +K+ G + +
Sbjct: 16 LDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLG------KDIKKEPE 69
Query: 696 KIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIAR 755
++ + R + + SL ++L TV + LSGG KQR+ +A+
Sbjct: 70 EV-----------KRRIGYLPEEPSLYENL--------TV--RENLKLSGGMKQRLALAQ 108
Query: 756 ALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNS-KTVLYVTHQVEFLPA-ADLVLV 813
AL D ++ + D+P S +D + F E+L L KT+L +H +E D V +
Sbjct: 109 ALLHDPELLILDEPTSGLDPES-RREFWELLRELKKEGKTILLSSHILEEAERLCDRVAI 167
Query: 814 IKDGKI 819
+ +G+I
Sbjct: 168 LNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 94.6 bits (236), Expect = 5e-22
Identities = 56/218 (25%), Positives = 94/218 (43%), Gaps = 48/218 (22%)
Query: 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1307
++L+++ RY VL +S + ++G +GSGKSTL++ + + EP +G IL
Sbjct: 1 LELKNVSKRYGQK--TVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSIL 58
Query: 1308 IDGIDISLIGLH--DLRTRLSIIPQDPVMFEG-TVRSNVD-PLEEYTDEQIWEALDKCQL 1363
IDG D++ + LR R+ ++ QD +F TV N+ L
Sbjct: 59 IDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALGL----------------- 101
Query: 1364 GDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLI 1423
S GQ+Q V L R L +L+LDE T+++D T +
Sbjct: 102 ----------------------SGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREV 139
Query: 1424 QQSLRQHF--SDCTVITIAHRITSVID-SDMVLLLSHG 1458
+ L+ TV+ + H + +D V++L G
Sbjct: 140 RALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDG 177
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 94.6 bits (236), Expect = 5e-22
Identities = 67/201 (33%), Positives = 93/201 (46%), Gaps = 33/201 (16%)
Query: 624 NFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK 683
N S L D++L + G VA+ G GSGKS+LL CI G SG++ + G
Sbjct: 5 NVSKRYG-QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGED 63
Query: 684 AYVAQSPWIQSGKIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINL 743
+ + E L R R V +L F TV+ + L
Sbjct: 64 --------LTDLEDELPPL------RRRIGMVFQDFAL--------FPHLTVLENIALGL 101
Query: 744 SGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSH---LFKEV--LLGLLNSKTVLYV 798
SGGQ+QR+ +ARAL D D+ L D+P SA+D T L K + LG TV+ V
Sbjct: 102 SGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLG----ITVVLV 157
Query: 799 THQVEFLPA-ADLVLVIKDGK 818
TH ++ AD V+V++DGK
Sbjct: 158 THDLDEAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 103 bits (257), Expect = 7e-22
Identities = 56/158 (35%), Positives = 98/158 (62%), Gaps = 3/158 (1%)
Query: 1303 AGQILIDGIDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKC 1361
+G+IL+DG+DI L DLR SI+ Q+P++F ++ N+ E+ T E + A
Sbjct: 1276 SGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFA 1335
Query: 1362 QLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDN 1421
+ + + K D+ V G++ S GQ+Q + + R LL+ KIL+LDEAT+S+D+ ++
Sbjct: 1336 AIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEK 1395
Query: 1422 LIQQSLR--QHFSDCTVITIAHRITSVIDSDMVLLLSH 1457
LI++++ + +D T+ITIAHRI S+ SD +++ ++
Sbjct: 1396 LIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNN 1433
|
Length = 1466 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 95.8 bits (239), Expect = 1e-21
Identities = 61/249 (24%), Positives = 104/249 (41%), Gaps = 30/249 (12%)
Query: 600 ELQPDLVEKQPRGSSETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGK 659
+ ++ P +E IE+ + + + L D++ +V G A+ G G+GK
Sbjct: 14 PEPKEPKKRHPIEINEPLIELKNVSVRRN---GKKILGDLSWQVNPGEHWAIVGPNGAGK 70
Query: 660 SSLLSCILGEVPKISGTLKLCGTK--------------AYVAQSPWIQ-----SGKIEDN 700
++LLS + GE P SG + L G + V S + + D
Sbjct: 71 TTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLV--SSELHERFRVRETVRDV 128
Query: 701 ILFGKEMDRERYNAVLDACSLEKDLEIL-SFGDQTVVGERGINLSGGQKQRIQIARALYQ 759
+L G Y L A L +L G + + +LS G+++R+ IARAL +
Sbjct: 129 VLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVK 188
Query: 760 DADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSK---TVLYVTHQVEFLPA-ADLVLVIK 815
D ++ + D+P +D L L S +L+VTH E +P L++K
Sbjct: 189 DPELLILDEPAQGLDLI-AREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLK 247
Query: 816 DGKITQAGK 824
+G++ GK
Sbjct: 248 EGEVVAQGK 256
|
Length = 257 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 1e-21
Identities = 81/312 (25%), Positives = 129/312 (41%), Gaps = 60/312 (19%)
Query: 1215 SVERIFQ-----YT-----CIPSEPPLEIEESRPNHSWPSHGKIDLRDLQVRYAPHMPF- 1263
E I YT +P +I + + +R+L RY
Sbjct: 238 PTEEILSNPQHPYTRGLLAAVPRLGDEKIIRLPRRGPLRAEPLLSVRNLSKRYGSRKGLF 297
Query: 1264 --------VLRGISCTF-PGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDIS 1314
+ +S GE G+VG +GSGKSTL + L ++ P++G I+ DG D+
Sbjct: 298 VRERGEVKAVDDVSFDLREGET-LGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLD 356
Query: 1315 LIG--LHDLRTRLSIIPQDPVMF---EGTVRSNV-DPLEEY-------TDEQIWEALDKC 1361
L G L LR R+ ++ QDP TV + +PL + ++ E L+
Sbjct: 357 LTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELV 416
Query: 1362 QLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATD- 1420
L E LD E S GQRQ V + R L K+L+LDE +++D +
Sbjct: 417 GLPPEF------LDRYPHE----LSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQA 466
Query: 1421 ---NLIQQSLRQHFSDCTVITIAHRITSVID--SDMVLLLSHGLIEEYDSPRKLLENKSS 1475
NL++ L++ T + I+H + +V+ +D V ++ G I E K+ EN
Sbjct: 467 QVLNLLKD-LQEEL-GLTYLFISHDL-AVVRYIADRVAVMYDGRIVEEGPTEKVFENPQH 523
Query: 1476 SFSQLVAEYTQR 1487
YT++
Sbjct: 524 -------PYTRK 528
|
Length = 539 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 95.2 bits (237), Expect = 2e-21
Identities = 68/201 (33%), Positives = 103/201 (51%), Gaps = 34/201 (16%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT--------KAY 685
P L+DINL + G + V G G GK++LL+ I G VP G++ L G +
Sbjct: 15 PALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGV 74
Query: 686 VAQS----PWIQSGKIEDNILFGKE---MDRERYNAVLDACSLEKDLEILSFGDQTVVGE 738
V Q+ PW ++DN+ FG + +++ + LE ++L +
Sbjct: 75 VFQNEGLLPWRN---VQDNVAFGLQLAGVEKMQ--------RLEIAHQMLKKVGLEGAEK 123
Query: 739 RGI-NLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL--NSKTV 795
R I LSGGQ+QR+ IARAL + + L D+PF A+DA T + + +LL L K V
Sbjct: 124 RYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQM-QTLLLKLWQETGKQV 182
Query: 796 LYVTHQVE---FLPAADLVLV 813
L +TH +E F+ A +LVL+
Sbjct: 183 LLITHDIEEAVFM-ATELVLL 202
|
Length = 255 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 97.0 bits (242), Expect = 2e-21
Identities = 69/215 (32%), Positives = 107/215 (49%), Gaps = 25/215 (11%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILG-EVPKISGTLKLCGTKAYVAQSPWI 692
L DI+L + G VA+ G G+GKS+LL I G E P +G ++L G + + +
Sbjct: 16 GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD-AGRIRLNGRVLFDVSNLAV 74
Query: 693 QSGKI---------------EDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVG 737
+ K+ DNI FG ++ +ER + +E+ L ++ +
Sbjct: 75 RDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEG---LA 131
Query: 738 ERGIN-LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSK--T 794
+R LSGGQ+QR+ +ARAL + + L D+PF A+DA L + L L + T
Sbjct: 132 DRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRW-LRKLHDRLGVT 190
Query: 795 VLYVTH-QVEFLPAADLVLVIKDGKITQAGKYTDV 828
++VTH Q E L AD V+V+ G+I Q G +V
Sbjct: 191 TVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEV 225
|
Length = 345 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 99.7 bits (249), Expect = 3e-21
Identities = 62/207 (29%), Positives = 104/207 (50%), Gaps = 8/207 (3%)
Query: 1264 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRT 1323
+L+GIS + GI+G +GSGKSTL + L I P +G + +DG D+ L
Sbjct: 351 ILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGR 410
Query: 1324 RLSIIPQDPVMFEGTVRSNVDPL-EEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENG 1382
+ +PQD +F+GT+ N+ EE E++ EA + + + + D+++ E G
Sbjct: 411 HIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGG 470
Query: 1383 ENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDT----ATDNLIQQSLRQHFSDCTVIT 1438
S GQRQ + L R L +++LDE +++D+ A I + + TV+
Sbjct: 471 ATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKAR---GGTVVV 527
Query: 1439 IAHRITSVIDSDMVLLLSHGLIEEYDS 1465
IAHR +++ D +L+L G I +
Sbjct: 528 IAHRPSALASVDKILVLQDGRIAAFGP 554
|
Length = 580 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 93.4 bits (233), Expect = 3e-21
Identities = 64/223 (28%), Positives = 101/223 (45%), Gaps = 30/223 (13%)
Query: 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1307
+ L +L RY L G+S T G++G G+GK+TL++ L + P++G I
Sbjct: 1 LQLENLTKRYGKKR--ALDGVSLTLG-PGMYGLLGPNGAGKTTLMRILATLTPPSSGTIR 57
Query: 1308 IDGIDISLIGLHDLRTRLSIIPQDPVMFEG-TVR---------SNVDPLEEYTDEQIWEA 1357
IDG D+ L LR R+ +PQ+ ++ TVR + E ++ E
Sbjct: 58 IDGQDV-LKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEV--KARVDEV 114
Query: 1358 LDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDT 1417
L+ LGD +KK G L S G R+ V + + L+ IL++DE TA +D
Sbjct: 115 LELVNLGDRAKKKIGSL-----------SGGMRRRVGIAQALVGDPSILIVDEPTAGLDP 163
Query: 1418 ATDNLIQQSLRQHFSDCTVITIAHRITSVIDS--DMVLLLSHG 1458
+ L + D VI H I ++S + V +L+ G
Sbjct: 164 EERIRFRNLLSELGEDRIVILSTH-IVEDVESLCNQVAVLNKG 205
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 94.1 bits (235), Expect = 4e-21
Identities = 65/248 (26%), Positives = 118/248 (47%), Gaps = 38/248 (15%)
Query: 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEP----- 1301
I++RDL + Y L+ I+ P K T ++G +G GKSTL++ L R+ +
Sbjct: 7 AIEVRDLNLYYGDKH--ALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGAR 64
Query: 1302 AAGQILIDGIDI--SLIGLHDLRTRLSIIPQDPVMFEGTVRSNV---------DPLEEYT 1350
G++L+DG +I + + +LR R+ ++ Q P F ++ NV E
Sbjct: 65 VEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKEL-- 122
Query: 1351 DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDE 1410
DE + +L K L DEV K+ +L ++ S GQ+Q +C+ R L + ++L++DE
Sbjct: 123 DEIVESSLKKAALWDEV--KD-RLH----KSALGLSGGQQQRLCIARALAVKPEVLLMDE 175
Query: 1411 ATASVDTATDNLIQQSLRQHFSDCTVITIAH------RITSVIDSDMVLLLSHGLIEEYD 1464
T+++D + I++ + + T++ + H R+ SD G + E+
Sbjct: 176 PTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARV-----SDYTAFFYLGELVEFG 230
Query: 1465 SPRKLLEN 1472
K+ N
Sbjct: 231 PTDKIFTN 238
|
Length = 253 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 94.7 bits (236), Expect = 5e-21
Identities = 46/271 (16%), Positives = 99/271 (36%), Gaps = 4/271 (1%)
Query: 303 VLLTALVAIVCTLATYVGPYLIDTLVQYLS-GKRDFENEGYALVSAFCVAKLVECLCQRF 361
+L+ L+ I+ V P L+ + L G D + +L +++ L +
Sbjct: 1 LLIAILLLILAGATALVFPLLLGRFLDSLIDGNGDERSSLISLAILLIAVGVLQGLLLQG 60
Query: 362 FVFRLEQLGIRLRAALIAMIYNKGLKLSSQAKQGNTSGEIINFMTVDAERVAELSWYIHD 421
+ E+LG R+R L + + L L N+ GE+ + +T D ++ +
Sbjct: 61 SFYLGERLGQRIRKRLFRALLRQILGLPMSFFDTNSVGELTSRLTNDVSKIRDGLGDKLG 120
Query: 422 PWLFLFEVALSFLILYKSLG-IASVAAFFGTVIFMLVNVPLSTVQEKFQNELMKSKDERM 480
+ + I+ G ++ + +L++ L+ K + K+ +
Sbjct: 121 LFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVLAKKLRKLNRKEQKAYAKAG 180
Query: 481 KATSEILRNMRILKLQGWELKFLSK-TIDLRKSESGWLKRCLYTSSITSFVFWCAPT-FV 538
E L +R +K G E L + L +E +K+ + + +
Sbjct: 181 SVAEESLSGIRTVKAFGREEYELERYDKALEDAEKAGIKKAITAGLSFGITQLISYLSYA 240
Query: 539 SVITFGTCILLKVPLESGKVLSAIATFRLLQ 569
+ FG +++ L G V + ++ L
Sbjct: 241 LALWFGAYLVISGGLSVGTVFAFLSLGLQLS 271
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 93.7 bits (233), Expect = 5e-21
Identities = 73/210 (34%), Positives = 108/210 (51%), Gaps = 24/210 (11%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKA----------- 684
L D+NL+V G VA+ G GSGKS+LL I G SG ++L G A
Sbjct: 16 LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIG 75
Query: 685 YVAQS-PWIQSGKIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGIN- 742
+V Q + + DNI FG E+ ++ +E+ LE++ +G+R N
Sbjct: 76 FVFQHYALFKHLTVRDNIAFGLEI--RKHPKAKIKARVEELLELVQL---EGLGDRYPNQ 130
Query: 743 LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSK---TVLYVT 799
LSGGQ+QR+ +ARAL + + L D+PF A+DA L L L+ + T ++VT
Sbjct: 131 LSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKEL--RSWLRKLHDEVHVTTVFVT 188
Query: 800 H-QVEFLPAADLVLVIKDGKITQAGKYTDV 828
H Q E + AD ++V+ +GKI Q G +V
Sbjct: 189 HDQEEAMEVADRIVVMSNGKIEQIGSPDEV 218
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 93.5 bits (233), Expect = 5e-21
Identities = 62/244 (25%), Positives = 117/244 (47%), Gaps = 29/244 (11%)
Query: 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVE-----P 1301
I++ +L + Y L+ I+ P + T ++G +G GKSTL+++L R+ +
Sbjct: 1 AIEIENLNLFYGEKE--ALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVR 58
Query: 1302 AAGQILIDGIDI--SLIGLHDLRTRLSIIPQDPVMFEGTVRSNV----------DPLEEY 1349
G++L DG DI I + +LR R+ ++ Q P F ++ N+ D ++
Sbjct: 59 IEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKD--KKE 116
Query: 1350 TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLD 1409
DE + E+L K L DEV+ ++ ++ S GQ+Q +C+ R L ++L+LD
Sbjct: 117 LDEIVEESLKKAALWDEVK-------DRLHDSALGLSGGQQQRLCIARALAVEPEVLLLD 169
Query: 1410 EATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRK 1468
E T+++D I++ +++ T++ + H + SD G + EY +
Sbjct: 170 EPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQ 229
Query: 1469 LLEN 1472
+ N
Sbjct: 230 IFTN 233
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 94.3 bits (235), Expect = 6e-21
Identities = 67/234 (28%), Positives = 121/234 (51%), Gaps = 16/234 (6%)
Query: 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1307
I + ++ Y L+ +S + I+G GSGKST+ + L +++P +G+I
Sbjct: 8 IKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIK 67
Query: 1308 IDGIDISLIGLHDLRTRLSIIPQDP-VMFEG-TVRSNVD-PLEE--YTDEQIWEALDKCQ 1362
IDGI IS L ++R ++ II Q+P F G TV ++ LE +++ + +
Sbjct: 68 IDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDII---- 123
Query: 1363 LGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNL 1422
D++ KK G ++ + + +N S GQ+Q V + VL +I++ DE+T+ +D
Sbjct: 124 --DDLAKKVG-MEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKRE 180
Query: 1423 IQQ---SLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENK 1473
I++ LR+ T+I+I H + I +D V++ S G + P+++L NK
Sbjct: 181 IKKIMVDLRKT-RKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNNK 233
|
Length = 271 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 93.9 bits (234), Expect = 6e-21
Identities = 75/268 (27%), Positives = 116/268 (43%), Gaps = 59/268 (22%)
Query: 633 NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK--------- 683
+ LKD+NL++ G VA+ G G+GKS+LL + G V SG + G +
Sbjct: 17 HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKEL 76
Query: 684 -------AYVAQSP-WIQSGKIEDNILFGKE------------MDRERYNAVLDACSLEK 723
+ Q + + +N+L G+ +E LDA LE+
Sbjct: 77 RKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDA--LER 134
Query: 724 DLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFK 783
+ IL Q R LSGGQ+QR+ IARAL Q I L D+P +++D + +
Sbjct: 135 -VGILDKAYQ-----RASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMD 188
Query: 784 EVLLGLLNSK---TVLYVTHQVEF-LPAADLVLVIKDGKITQAGKYTDVINSGTDFMELV 839
+L +N + TV+ HQV+ AD ++ +K G+I G +++ TD
Sbjct: 189 --ILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASEL----TD----- 237
Query: 840 DAHKQALSTLDSIEGRPLSEKGSANGEN 867
LD I G +SE + EN
Sbjct: 238 -------EALDEIYGNEISEDINRGVEN 258
|
Length = 258 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 95.4 bits (238), Expect = 8e-21
Identities = 64/233 (27%), Positives = 109/233 (46%), Gaps = 31/233 (13%)
Query: 1264 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLI---GLHD 1320
L +S P + GI+G +G+GKSTL++ + + P +G + +DG D++ + L
Sbjct: 21 ALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQ 80
Query: 1321 LRTRLSIIPQDPVMFEG-TVRSNVD-PLE------EYTDEQIWEALDKCQLGDEVRKKEG 1372
LR ++ +I Q + TV NV PLE +++ E L+ L D+ +
Sbjct: 81 LRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPA 140
Query: 1373 KLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSL----R 1428
+L S GQ+Q V + R L KIL+ DEAT+++D T I + L R
Sbjct: 141 QL-----------SGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINR 189
Query: 1429 QHFSDCTVITIAHRITSVIDS--DMVLLLSHGLIEEYDSPRKLLENKSSSFSQ 1479
+ T++ I H + V+ D V +L G + E + ++ N + +Q
Sbjct: 190 EL--GLTIVLITHEM-EVVKRICDRVAVLDQGRLVEEGTVSEVFANPKHAITQ 239
|
Length = 339 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 97.8 bits (244), Expect = 1e-20
Identities = 67/229 (29%), Positives = 116/229 (50%), Gaps = 19/229 (8%)
Query: 618 IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTL 677
IE + F++ P L++IN K+ G VA+ G GSGKS++ + + G +
Sbjct: 342 IEFRNVTFTYP-GKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEI 400
Query: 678 KLCGTK-------------AYVAQSPWIQSGKIEDNILFGKEMDRERY---NAVLDACSL 721
L G A V+Q+ + + I +NI + + R A A ++
Sbjct: 401 LLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAM 460
Query: 722 EKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHL 781
+ + + G TV+GE G+ LSGGQ+QRI IARAL +D+ I + D+ SA+D +
Sbjct: 461 DF-INKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTES-ERA 518
Query: 782 FKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVIN 830
+ L L ++T L + H++ + AD +LV++DG+I + G + +++
Sbjct: 519 IQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLA 567
|
Length = 582 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 97.1 bits (242), Expect = 2e-20
Identities = 72/276 (26%), Positives = 120/276 (43%), Gaps = 31/276 (11%)
Query: 584 QTKVSLQRIASFFCLDELQPDLVEKQPRGSSETAIEIADG-------NFSWDISSHNPTL 636
QT ++L+R+ L+ +PR + A+ G F + S L
Sbjct: 423 QTGIALERLGDI--LNS------PTEPRSAGLAALPELRGAITFENIRFRYAPDS-PEVL 473
Query: 637 KDINLKVFHGMRVAVCGTVGSGKSSLLSCI-------LGEV------PKISGTLKLCGTK 683
++NL + G + + G GSGKS+L + G+V I+ L
Sbjct: 474 SNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQM 533
Query: 684 AYVAQSPWIQSGKIEDNILFGK-EMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGIN 742
V Q + S I DNI E + L G T VGE+G N
Sbjct: 534 GVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGAN 593
Query: 743 LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQV 802
LSGGQ+QRI IARAL + I +FD+ SA+D + L + + +TV+ + H++
Sbjct: 594 LSGGQRQRIAIARALVGNPRILIFDEATSALDYES-EALIMRNMREICRGRTVIIIAHRL 652
Query: 803 EFLPAADLVLVIKDGKITQAGKYTDVINSGTDFMEL 838
+ A D ++V++ G+I ++G++ +++ + L
Sbjct: 653 STVRACDRIIVLEKGQIAESGRHEELLALQGLYARL 688
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 90.3 bits (225), Expect = 3e-20
Identities = 53/228 (23%), Positives = 102/228 (44%), Gaps = 26/228 (11%)
Query: 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1307
++L+ L Y L +S T + ++G +G GK+TL++ + + P +G+IL
Sbjct: 1 LELKGLSKTYGSV--RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEIL 58
Query: 1308 IDGIDISLIGLHDLRTRLSIIPQDPVMFEG-TVRSNVD-PL------EEYTDEQIWEALD 1359
IDG D++ + R + ++ QD +F TV N+ L + ++ E L+
Sbjct: 59 IDGRDVTGVPPE--RRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLE 116
Query: 1360 KCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTAT 1419
L + + +L S GQ+Q V L R L + +L+LDE +++D
Sbjct: 117 LVGLEGLLNRYPHEL-----------SGGQQQRVALARALAREPSLLLLDEPLSALDAKL 165
Query: 1420 DNLIQQSLR--QHFSDCTVITIAHRITSVID-SDMVLLLSHGLIEEYD 1464
+++ L+ Q T I + H + +D + +++ G I +
Sbjct: 166 REELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 91.7 bits (228), Expect = 3e-20
Identities = 66/213 (30%), Positives = 100/213 (46%), Gaps = 39/213 (18%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG--------TKAY 685
L+D++L + G V V G G GK++LL+ I G V G+++L G +
Sbjct: 19 SALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGV 78
Query: 686 VAQS----PWIQSGKIEDNILFG-------KEMDRERYNAVLDACSLEKDLEILSFGDQT 734
V Q+ PW+ + DN+ FG K RE + +L LE +
Sbjct: 79 VFQNEALLPWLN---VIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEG------AEHKY 129
Query: 735 VVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL--LNS 792
+ LSGG +QR+ IARAL + + L D+PF A+DA T + +E+LL L
Sbjct: 130 IW-----QLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQM-QELLLDLWQETG 183
Query: 793 KTVLYVTHQVE---FLPAADLVLVIKDGKITQA 822
K VL +TH +E FL +VL G++ +
Sbjct: 184 KQVLLITHDIEEALFLATRLVVLSPGPGRVVER 216
|
Length = 259 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 88.4 bits (220), Expect = 5e-20
Identities = 54/201 (26%), Positives = 86/201 (42%), Gaps = 56/201 (27%)
Query: 633 NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK--------- 683
P L++++ + G +A+ G GSGKS+L ILG + SG ++L G
Sbjct: 15 PPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNEL 74
Query: 684 ----AYVAQSPWIQSGKIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGER 739
Y+ Q + SG I +NIL
Sbjct: 75 GDHVGYLPQDDELFSGSIAENIL------------------------------------- 97
Query: 740 GINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL-LNSKTVLYV 798
SGGQ+QR+ +ARALY + I + D+P S +D G + + L T + +
Sbjct: 98 ----SGGQRQRLGLARALYGNPRILVLDEPNSHLD-VEGERALNQAIAALKAAGATRIVI 152
Query: 799 THQVEFLPAADLVLVIKDGKI 819
H+ E L +AD +LV++DG++
Sbjct: 153 AHRPETLASADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 91.2 bits (227), Expect = 5e-20
Identities = 68/261 (26%), Positives = 121/261 (46%), Gaps = 47/261 (18%)
Query: 1248 IDLRDLQVRYAPHMPF--VLRGISCTF-PGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAG 1304
+ +R+L + Y L +S GE GIVG +GSGKSTL + L + +P++G
Sbjct: 4 LSVRNLSIVYGGGKFAFHALNNVSLEIERGET-LGIVGESGSGKSTLARLLAGLEKPSSG 62
Query: 1305 QILIDGIDISLIGLHDLRTR-LSIIPQDPVMFEGTV--RSNV-----DPL----EEYTDE 1352
IL+DG ++ R + ++ QDP ++ R V +PL + +
Sbjct: 63 SILLDGKPLAPKKRAKAFYRPVQMVFQDP---YSSLNPRRTVGRILSEPLRPHGLSKSQQ 119
Query: 1353 QIWEALDKCQLGDEV-RKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEA 1411
+I E LD+ L ++ +L S GQRQ + + R L+ K+L+LDE
Sbjct: 120 RIAELLDQVGLPPSFLDRRPHEL-----------SGGQRQRIAIARALIPEPKLLILDEP 168
Query: 1412 TASVDTATD----NLIQQSLRQHFSDCTVITIAHRITSVID--SDMVLLLSHGLIEEYDS 1465
T+++D + NL+ + L++ T + I+H + ++++ D + ++ +G I E
Sbjct: 169 TSALDVSVQAQILNLLLE-LKKER-GLTYLFISHDL-ALVEHMCDRIAVMDNGQIVE-IG 224
Query: 1466 PRKLLENKSSSFSQLVAEYTQ 1486
P + L S YT+
Sbjct: 225 PTEEL------LSHPSHPYTR 239
|
Length = 252 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 90.7 bits (225), Expect = 6e-20
Identities = 74/247 (29%), Positives = 124/247 (50%), Gaps = 35/247 (14%)
Query: 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVE--PAA- 1303
KI++RDL+V + VL G++ P T ++G +GSGKSTL++ R++E P A
Sbjct: 3 KIEIRDLKVSFGQVE--VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEAR 60
Query: 1304 --GQILIDGIDISLIGLHDLRTRLSIIPQDP------VMFE----GTVRSNVDPLEEYTD 1351
G++ +DG DI + + +LR R+ ++ Q P +FE G + + ++
Sbjct: 61 VSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQ 120
Query: 1352 EQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEA 1411
E++ AL+K QL DEV+ + K+ S GQ+Q +C+ R L + ++L+ DE
Sbjct: 121 ERVRWALEKAQLWDEVKDRLDAPAGKL-------SGGQQQRLCIARALAFQPEVLLADEP 173
Query: 1412 TASVDTATDNLIQQSLRQHFSDCTVITIAH------RITSVIDSDMVLLLSHGLIEEYDS 1465
TA++D I+ + D T++ + H RI SD V L G I E+
Sbjct: 174 TANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARI-----SDYVAFLYKGQIVEWGP 228
Query: 1466 PRKLLEN 1472
R++ N
Sbjct: 229 TREVFTN 235
|
Length = 250 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 90.3 bits (225), Expect = 9e-20
Identities = 70/244 (28%), Positives = 115/244 (47%), Gaps = 33/244 (13%)
Query: 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQI 1306
I++R + + + +L G+ P + I+G +GSGKSTL++ + ++ P G+I
Sbjct: 8 LIEVRGVTKSFGDRV--ILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEI 65
Query: 1307 LIDGIDI---SLIGLHDLRTRLSIIPQDPVMFEG-TVRSNVD-PLEEYTD-------EQI 1354
LIDG DI S L+++R R+ ++ Q +F TV NV PL E+T E +
Sbjct: 66 LIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELV 125
Query: 1355 WEALDKCQL-GDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATA 1413
L+ L G +L S G R+ V L R + ++L LDE T+
Sbjct: 126 LMKLELVGLRGAAADLYPSEL-----------SGGMRKRVALARAIALDPELLFLDEPTS 174
Query: 1414 SVD----TATDNLIQQSLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRK 1468
+D D LI + L TVI + H + S++ +D V +L+ G + +P +
Sbjct: 175 GLDPISAGVIDELI-RELNDAL-GLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEE 232
Query: 1469 LLEN 1472
LL +
Sbjct: 233 LLAS 236
|
Length = 263 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 87.5 bits (218), Expect = 1e-19
Identities = 52/216 (24%), Positives = 96/216 (44%), Gaps = 46/216 (21%)
Query: 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1307
I++R+L RY L IS T + G++G G+GK+TLI+ + +++P +G+I
Sbjct: 1 IEVRNLSKRYGKK--TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIK 58
Query: 1308 IDGIDISLIGLHDLRTRLSIIPQDPVMFEG-TVRSNVDPLEEYTDEQIWEALDKCQLGDE 1366
+ G DI +++ R+ +P++P ++E TVR N+
Sbjct: 59 VLGKDIKKEP-EEVKRRIGYLPEEPSLYENLTVRENLK---------------------- 95
Query: 1367 VRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQS 1426
S G +Q + L + LL ++L+LDE T+ +D + +
Sbjct: 96 ------------------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWEL 137
Query: 1427 LRQH-FSDCTVITIAHRITSVID-SDMVLLLSHGLI 1460
LR+ T++ +H + D V +L++G I
Sbjct: 138 LRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 88.9 bits (221), Expect = 2e-19
Identities = 65/220 (29%), Positives = 98/220 (44%), Gaps = 44/220 (20%)
Query: 638 DINLKVFHGMRVAVCGTVGSGKSSLLSCILG-EVPKISGTLKLCG---TKAYVAQSP--- 690
+L V G VA+ G G+GKS+LL+ I G E P SG + + G T + A+ P
Sbjct: 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPA-SGEILINGVDHTASPPAERPVSM 75
Query: 691 WIQSGK------IEDNILFG-------KEMDRERYNAVLDACSLEKDLEILSFGDQTVVG 737
Q + NI G RE+ A L F + + G
Sbjct: 76 LFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLA------GFLKR-LPG 128
Query: 738 ERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNS----- 792
E LSGGQ+QR+ +AR L ++ I L D+PFSA+D + +L L++
Sbjct: 129 E----LSGGQRQRVALARCLVREQPILLLDEPFSALDP-----ALRAEMLALVSQLCDER 179
Query: 793 -KTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYTDVIN 830
T+L VTH E AD V+ + +G+I G ++++
Sbjct: 180 KMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLS 219
|
Length = 231 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 87.6 bits (218), Expect = 3e-19
Identities = 69/216 (31%), Positives = 98/216 (45%), Gaps = 50/216 (23%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILG-EVPKISGTLKLCGTKAYVAQSPWIQS 694
LK I+L V G V + G GSGKS+LL CI E P SGT+ + G K + +
Sbjct: 16 LKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPD-SGTIIIDGLKLTDDKKNINEL 74
Query: 695 GK----------------IEDNILFG----KEMDRERYNAVLDACSLEKDLEILSFGDQT 734
+ + +NI K M + +A E+ LE+L
Sbjct: 75 RQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKA------EA--EERALELL-----E 121
Query: 735 VVG------ERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLG 788
VG LSGGQ+QR+ IARAL + + LFD+P SA+D L EVL
Sbjct: 122 KVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALD----PELVGEVLDV 177
Query: 789 LLN----SKTVLYVTHQVEF-LPAADLVLVIKDGKI 819
+ + T++ VTH++ F AD V+ + DG+I
Sbjct: 178 MKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 88.0 bits (219), Expect = 3e-19
Identities = 69/243 (28%), Positives = 117/243 (48%), Gaps = 31/243 (12%)
Query: 1248 IDLRDLQVRYAPHMPFV--LRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQ 1305
I+L+++ + V L+ +S + P + GI+GR+G+GKSTLI+ + + P +G
Sbjct: 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGS 61
Query: 1306 ILIDGIDISLI---GLHDLRTRLSIIPQDPVMFEG-TVRSNVD-PLE------EYTDEQI 1354
+L+DG D++L+ L R R+ +I Q + TV NV PLE +E++
Sbjct: 62 VLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERV 121
Query: 1355 WEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATAS 1414
E L+ L D+ +L S GQ+Q V + R L K+L+ DEAT++
Sbjct: 122 LELLELVGLEDKADAYPAQL-----------SGGQKQRVGIARALANNPKVLLCDEATSA 170
Query: 1415 VDTATDNLIQQSLR---QHFSDCTVITIAHRITSVIDS--DMVLLLSHGLIEEYDSPRKL 1469
+D T I LR + T++ I H + V+ D V ++ G + E + ++
Sbjct: 171 LDPETTQSILALLRDINREL-GLTIVLITHEM-EVVKRICDRVAVMEKGEVVEEGTVEEV 228
Query: 1470 LEN 1472
N
Sbjct: 229 FAN 231
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 90.4 bits (224), Expect = 5e-19
Identities = 63/211 (29%), Positives = 105/211 (49%), Gaps = 27/211 (12%)
Query: 633 NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPK--ISGTLKLCGTKAYVAQSP 690
N L D++L++ G +A+ G G GK++LL I G V ++G + + + +P
Sbjct: 18 NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRD--LTHAP 75
Query: 691 WIQSG--------------KIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQTVV 736
+ G K+EDN+ FG + ++ A + L+++ GD
Sbjct: 76 PHKRGLALLFQNYALFPHLKVEDNVAFG--LRAQKMPKADIAERVADALKLVGLGD---A 130
Query: 737 GER-GINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEV--LLGLLNSK 793
LSGG +QRI IARA+ + D+ L D+P SA+DA+ +++ +E+ L L
Sbjct: 131 AAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPEL 190
Query: 794 TVLYVTH-QVEFLPAADLVLVIKDGKITQAG 823
T+L VTH Q + L AD ++KDG++ G
Sbjct: 191 TILCVTHDQDDALTLADKAGIMKDGRLAAHG 221
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 88.2 bits (219), Expect = 9e-19
Identities = 67/243 (27%), Positives = 124/243 (51%), Gaps = 28/243 (11%)
Query: 1248 IDLRDLQVRYAPHMPF---VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAG 1304
I + +L Y PF L ++ + G++G TGSGKSTLIQ L +++P +G
Sbjct: 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSG 62
Query: 1305 QILIDGIDIS--LIGLHDLRTRLSIIPQDP--VMFEGTVR-------SNVDPLEEYTDEQ 1353
+I+IDG+DI+ + L D+R ++ ++ Q P +FE T+ N+ EE + +
Sbjct: 63 KIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENR 122
Query: 1354 IWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATA 1413
+ A++ L E K + + S GQ++ V + V+ KIL+LDE TA
Sbjct: 123 VKRAMNIVGLDYEDYKDKSPFE---------LSGGQKRRVAIAGVVAMEPKILILDEPTA 173
Query: 1414 SVD-TATDNLIQQ--SLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKL 1469
+D D ++ + L + + + T+I ++H + V +D +++++ G E +PR++
Sbjct: 174 GLDPKGRDEILNKIKELHKEY-NMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREV 232
Query: 1470 LEN 1472
+
Sbjct: 233 FKE 235
|
Length = 287 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 88.5 bits (220), Expect = 1e-18
Identities = 59/258 (22%), Positives = 121/258 (46%), Gaps = 49/258 (18%)
Query: 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1307
++L++++ + VL+ ++ + ++G +G GKSTL++ + + EP +G+IL
Sbjct: 4 LELKNVRKSFGSF--EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEIL 61
Query: 1308 IDGIDISLIGLHDLRTRLSIIPQDPVMFE-GTVRSNVD-PL------EEYTDEQIWEALD 1359
IDG D++ L + ++++ Q+ ++ TV N+ L + D+++ E
Sbjct: 62 IDGRDVT--DLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAK 119
Query: 1360 KCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTAT 1419
L + +K +L S GQRQ V L R L+++ K+ +LDE +++D
Sbjct: 120 LLGLEHLLNRKPLQL-----------SGGQRQRVALARALVRKPKVFLLDEPLSNLDAK- 167
Query: 1420 DNLIQQSLRQHFSDCTVITIAHR---ITSVI---D-------SDMVLLLSHGLIEEYDSP 1466
LR + I H T++ D +D +++++ G I++ +P
Sbjct: 168 -------LRVLMR--SEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTP 218
Query: 1467 RKLLENKSSSFSQLVAEY 1484
+L E ++ F VA +
Sbjct: 219 LELYERPANLF---VAGF 233
|
Length = 338 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 86.4 bits (215), Expect = 1e-18
Identities = 68/239 (28%), Positives = 98/239 (41%), Gaps = 79/239 (33%)
Query: 631 SHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSP 690
LK I+L V G V + G GSGKS+LL C+ G
Sbjct: 13 GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE------------------- 53
Query: 691 WIQSGKIE---DNILFGKEMDRER---------YNA-----VLDACSL------------ 721
SG I +++ K++ + R +N VL+ +L
Sbjct: 54 -PDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAE 112
Query: 722 --EKDLEIL----------SFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDP 769
EK LE+L ++ Q LSGGQ+QR+ IARAL D + LFD+P
Sbjct: 113 AREKALELLEKVGLADKADAYPAQ---------LSGGQQQRVAIARALAMDPKVMLFDEP 163
Query: 770 FSAVDAHTGSHLFKEVLLGLLNSK----TVLYVTHQVEF-LPAADLVLVIKDGKITQAG 823
SA+D L EVL + + T++ VTH++ F AD V+ + GKI + G
Sbjct: 164 TSALD----PELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEG 218
|
Length = 240 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 90.5 bits (225), Expect = 2e-18
Identities = 82/289 (28%), Positives = 135/289 (46%), Gaps = 34/289 (11%)
Query: 558 VLSAIATF--RLLQILIYKLPAIISMTIQTKVSLQRIASFFCLDELQPDLVEKQPRGSSE 615
VL A ++ RL + LI +L SM Q V+ +R+ F +D +Q G+ +
Sbjct: 283 VLYAFISYLGRLNEPLI-ELTTQQSMLQQAVVAGERV--FELMDG------PRQQYGNDD 333
Query: 616 TA-----IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEV 670
I+I + +F++ N L++INL V VA+ G GSGKS+L S ++G
Sbjct: 334 RPLQSGRIDIDNVSFAYR--DDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYY 391
Query: 671 PKISGTLKLCGTK-------------AYVAQSPWIQSGKIEDNILFGKEMDRERYNAVLD 717
P G ++L G A V Q P + + N+ G+++ E+ L+
Sbjct: 392 PLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALE 451
Query: 718 ACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHT 777
L + L G T +GE+G NLS GQKQ + +AR L Q I + D+ + +D+ T
Sbjct: 452 TVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGT 511
Query: 778 GSHLFKEVLLGLLNSKTVLYV-THQVEFLPAADLVLVIKDGKITQAGKY 825
+ + L + T L V H++ + AD +LV+ G+ + G +
Sbjct: 512 EQAIQQA--LAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTH 558
|
Length = 592 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 85.7 bits (213), Expect = 2e-18
Identities = 64/219 (29%), Positives = 102/219 (46%), Gaps = 32/219 (14%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCI-----LGEVPKISGTLKLCGTKAY----- 685
LKDI+L + G A+ G G GKS+LL + L G + L G Y
Sbjct: 16 LKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVD 75
Query: 686 ----------VAQSPWIQSGKIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQTV 735
V Q P G I DN+ +G + + LD +E+ L + D+
Sbjct: 76 VLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDE-RVEEALRKAALWDE-- 132
Query: 736 VGER--GINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSK 793
V +R + LSGGQ+QR+ +ARAL + ++ L D+P SA+D + + +E++ L
Sbjct: 133 VKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPIS-TAKIEELIAELKKEY 191
Query: 794 TVLYVTH---QVEFLPAADLVLVIKDGKITQAGKYTDVI 829
T++ VTH Q + AD + +G++ + G T+ I
Sbjct: 192 TIVIVTHNMQQAARV--ADRTAFLLNGRLVEFGP-TEQI 227
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 86.5 bits (215), Expect = 2e-18
Identities = 69/249 (27%), Positives = 107/249 (42%), Gaps = 46/249 (18%)
Query: 613 SSETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPK 672
S E IE+ S+ L ++L V G +A+ G GSGKS+LL ILG +
Sbjct: 4 SPEPLIEVRGVTKSF---GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRP 60
Query: 673 ISGTLKLCGTK--------AYVAQSPW---IQSG------KIEDNILFGKEMDRERYNAV 715
G + + G Y + Q G + +N+ F + ++
Sbjct: 61 DKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESL 120
Query: 716 LDACSLEKDLEILSFGDQTVVGERGIN-------LSGGQKQRIQIARALYQDADIYLFDD 768
+ L K LE +VG RG LSGG ++R+ +ARA+ D ++ D+
Sbjct: 121 IRELVLMK-LE--------LVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDE 171
Query: 769 PFSAVDAHTG---SHLFKEVL--LGLLNSKTVLYVTHQV-EFLPAADLVLVIKDGKITQA 822
P S +D + L +E+ LGL TV+ VTH + L AD V V+ DGK+
Sbjct: 172 PTSGLDPISAGVIDELIRELNDALGL----TVIMVTHDLDSLLTIADRVAVLADGKVIAE 227
Query: 823 GKYTDVINS 831
G +++ S
Sbjct: 228 GTPEELLAS 236
|
Length = 263 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 85.3 bits (211), Expect = 2e-18
Identities = 59/202 (29%), Positives = 101/202 (50%), Gaps = 24/202 (11%)
Query: 640 NLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQ--SGKI 697
+L V G VA+ G G+GKS+LL+ I G + SG++K+ +++ +P+ + S
Sbjct: 18 DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVND-QSHTGLAPYQRPVSMLF 76
Query: 698 EDNILFGKEMDRER----YNAVLDACSLEKDLEILSFGDQTVVG---ERGIN-LSGGQKQ 749
++N LF R+ + L + +++ +++ Q + +R LSGGQ+Q
Sbjct: 77 QENNLFAHLTVRQNIGLGLHPGLKLNAEQQE-KVVDAAQQVGIADYLDRLPEQLSGGQRQ 135
Query: 750 RIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNS------KTVLYVTHQVE 803
R+ +AR L + I L D+PFSA+D L +E +L L+ +T+L VTH +
Sbjct: 136 RVALARCLVRPNPILLLDEPFSALDP-----LLREEMLALVKQLCSERQRTLLMVTHHLS 190
Query: 804 FLPA-ADLVLVIKDGKITQAGK 824
A A + V+ GKI
Sbjct: 191 DARAIASQIAVVSQGKIKVVSD 212
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 89.9 bits (224), Expect = 3e-18
Identities = 63/258 (24%), Positives = 106/258 (41%), Gaps = 51/258 (19%)
Query: 1248 IDLRDLQVRYAPHM--PFVLRGISCT-FPGEKKTGIVGRTGSGKSTLIQTLFRIVEP--- 1301
+++ +L V +A +R +S PGE GIVG +GSGKSTL L ++
Sbjct: 6 LEVENLTVEFATDGGRVPAVRDVSFEVEPGEI-LGIVGESGSGKSTLALALMGLLPEGGR 64
Query: 1302 -AAGQILIDGIDISLIGLHDLR----TRLSIIPQDP------------VMFEGTVRSNVD 1344
+G++++DG D+ + ++R R+++I QDP + E
Sbjct: 65 ITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKG 124
Query: 1345 PLEEYTDEQIWEALDKCQLGDEVRKKE------GKLDSKVTENGENWSMGQRQLVCLGRV 1398
E + E L++ L D R+ G G RQ V +
Sbjct: 125 SRAEARKRAV-ELLEQVGLPDPERRDRYPHQLSG---------------GMRQRVMIAMA 168
Query: 1399 LLKRRKILMLDEATASVDTATDNLIQQSLRQHFSD---CTVITIAHRITSVID-SDMVLL 1454
L + K+L+ DE T ++D T I L+ V+ I H + V + +D V++
Sbjct: 169 LALKPKLLIADEPTTALDVTTQAQILDLLKD-LQRELGMAVLFITHDLGVVAELADRVVV 227
Query: 1455 LSHGLIEEYDSPRKLLEN 1472
+ G I E ++L N
Sbjct: 228 MYKGEIVETGPTEEILSN 245
|
Length = 539 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 87.8 bits (218), Expect = 3e-18
Identities = 80/231 (34%), Positives = 112/231 (48%), Gaps = 27/231 (11%)
Query: 617 AIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGT 676
+IEIA+ S+ L DI+L + G VA+ G GSGK++LL I G + SG
Sbjct: 2 SIEIANIKKSFG---RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGH 58
Query: 677 LKLCGTK-----------AYVAQS-PWIQSGKIEDNILFGKEM--DRERYNAVLDACSLE 722
++ GT +V Q + + DNI FG + RER NA A
Sbjct: 59 IRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNA---AAIKA 115
Query: 723 KDLEILSFGDQTVVGER-GINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHL 781
K ++L + +R LSGGQKQR+ +ARAL + I L D+PF A+DA L
Sbjct: 116 KVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKEL 175
Query: 782 FKEVLLGLLNSK---TVLYVTH-QVEFLPAADLVLVIKDGKITQAGKYTDV 828
+ L L+ + T ++VTH Q E + AD V+V+ G I QAG V
Sbjct: 176 RR--WLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQV 224
|
Length = 353 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 85.5 bits (211), Expect = 3e-18
Identities = 63/249 (25%), Positives = 112/249 (44%), Gaps = 25/249 (10%)
Query: 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVE--PAA- 1303
KID RD+ Y L+GIS + +G +G GKST ++ R+ + PA
Sbjct: 3 KIDARDVNFWYGDFH--ALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATR 60
Query: 1304 --GQILIDGIDISLIGLH--DLRTRLSIIPQDPVMFEGTVRSNVD--------PLEEYTD 1351
G+I IDG +I G+ +LR + ++ Q P F ++ NV +
Sbjct: 61 LEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIR 120
Query: 1352 EQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEA 1411
+++ E L L DEV+ K+ E+ S GQ+Q +C+ R + +L++DE
Sbjct: 121 QRVEETLKGAALWDEVK-------DKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEP 173
Query: 1412 TASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLL 1470
+++D + +++ + + D T++ + H + SD G + EYD +K+
Sbjct: 174 ASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIF 233
Query: 1471 ENKSSSFSQ 1479
N +Q
Sbjct: 234 TNPEKEATQ 242
|
Length = 250 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 85.3 bits (212), Expect = 4e-18
Identities = 57/221 (25%), Positives = 105/221 (47%), Gaps = 42/221 (19%)
Query: 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1307
I++ +L Y P+ L+ +S + + ++G +G+GKSTL++ L +VEP +G +L
Sbjct: 1 IEVENLSKTY-PNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVL 59
Query: 1308 IDGIDISLIGLHDLRT----------RLSIIPQDPVM---------FEGTVRS--NVDPL 1346
IDG DI+ + LR + ++I + V+ T RS + P
Sbjct: 60 IDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPK 119
Query: 1347 EEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKIL 1406
EE ++ AL++ L D+ ++ +L S GQ+Q V + R L+++ K++
Sbjct: 120 EEK--QRALAALERVGLLDKAYQRADQL-----------SGGQQQRVAIARALMQQPKLI 166
Query: 1407 MLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVI 1447
+ DE AS+D A+ + L++ I IT ++
Sbjct: 167 LADEPVASLDPASSRQVMDLLKR-------INREEGITVIV 200
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 85.0 bits (211), Expect = 4e-18
Identities = 60/248 (24%), Positives = 116/248 (46%), Gaps = 16/248 (6%)
Query: 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1307
I+ ++ RY + ++ + ++G +GSGK+T ++ + R++EP +G+I
Sbjct: 1 IEFENVTKRY-GGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIF 59
Query: 1308 IDGIDISLIGLHDLRTRLS-IIPQDPVMFEGTVRSN---VDPLEEYTDEQIWEALDKCQL 1363
IDG DI +LR ++ +I Q + TV N V L ++ E+I E D +L
Sbjct: 60 IDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERAD--EL 117
Query: 1364 GDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLI 1423
V + + S GQ+Q V + R L +L++DE ++D T + +
Sbjct: 118 LALVGLDPAEFADRYP---HELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQL 174
Query: 1424 QQSLR--QHFSDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLENKSSSFSQL 1480
Q+ + Q T++ + H I +D + ++ +G I + +P ++L + ++ F
Sbjct: 175 QEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRSPANDF--- 231
Query: 1481 VAEYTQRS 1488
VAE+
Sbjct: 232 VAEFVGAD 239
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 84.1 bits (209), Expect = 5e-18
Identities = 65/233 (27%), Positives = 107/233 (45%), Gaps = 35/233 (15%)
Query: 1248 IDLRDLQVRYAPHMP--FVLRGISCTF-PGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAG 1304
I+L++L Y L+G+S + GE IVG +GSGKSTL+ L + P +G
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEF-VAIVGPSGSGKSTLLNILGGLDRPTSG 59
Query: 1305 QILIDGIDISLIGLHDL----RTRLSIIPQD----PVMFEGTVRSNVD-PLE------EY 1349
++ +DG DIS + +L R + + Q P + T NV+ PL +
Sbjct: 60 EVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDL---TALENVELPLLLAGVPKKE 116
Query: 1350 TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLD 1409
E+ E L++ LGD + +L S GQ+Q V + R L KI++ D
Sbjct: 117 RRERAEELLERVGLGDRLNHYPSEL-----------SGGQQQRVAIARALANDPKIILAD 165
Query: 1410 EATASVDTATDNLIQQSLRQ--HFSDCTVITIAHRITSVIDSDMVLLLSHGLI 1460
E T ++D+ T + + LR+ + T++ + H +D ++ L G I
Sbjct: 166 EPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 84.7 bits (210), Expect = 5e-18
Identities = 68/232 (29%), Positives = 108/232 (46%), Gaps = 41/232 (17%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK---------- 683
+ ++NL++ G + + G GSGK++ + I + SG + + G
Sbjct: 15 KAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELR 74
Query: 684 ---AYVAQSPWIQSG-----KIEDNIL-------FGKEMDRERYNAVLDACSLEKDLEIL 728
YV Q Q G +E+NI + KE RER + +L L+
Sbjct: 75 RKIGYVIQ----QIGLFPHMTVEENIALVPKLLKWPKEKIRER---ADELLAL-VGLDPA 126
Query: 729 SFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVL-L 787
F D+ E LSGGQ+QR+ +ARAL D + L D+PF A+D T L +E L
Sbjct: 127 EFADR-YPHE----LSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRL 181
Query: 788 GLLNSKTVLYVTHQV-EFLPAADLVLVIKDGKITQAGKYTDVINS-GTDFME 837
KT+++VTH + E AD + ++K+G+I Q G +++ S DF+
Sbjct: 182 QQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRSPANDFVA 233
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 85.4 bits (211), Expect = 5e-18
Identities = 57/225 (25%), Positives = 110/225 (48%), Gaps = 26/225 (11%)
Query: 1276 KKTGIVGRTGSGKSTLIQTLFRIVE-----PAAGQILIDGIDI--SLIGLHDLRTRLSII 1328
+ T I+G +G GK+TL++++ R+ + G+I G DI + + + R ++ ++
Sbjct: 30 QITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMV 89
Query: 1329 PQDPVMFEGTVRSNVD--------PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTE 1380
Q P F ++ NV + D + E+L K L DEV+ S++ +
Sbjct: 90 FQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVK-------SELNK 142
Query: 1381 NGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIA 1440
G S GQ+Q +C+ R L ++++LDE T+++D I++ L + + T++ +
Sbjct: 143 PGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVT 202
Query: 1441 HRITSVID-SDMVLLLSHGLIEEYDSPRKLLENKSSSFSQLVAEY 1484
H I I +D + + G + EY R+++E ++L EY
Sbjct: 203 HNIGQAIRIADYIAFMYRGELIEYGPTREIVERPK---NKLTEEY 244
|
Length = 250 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 83.8 bits (208), Expect = 5e-18
Identities = 65/208 (31%), Positives = 102/208 (49%), Gaps = 28/208 (13%)
Query: 635 TLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILG-EVPKISGTLKLCGTK---------- 683
L D+NL + G V + G G GK++ L I G E P SG + + G
Sbjct: 15 ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPT-SGRIYIGGRDVTDLPPKDRD 73
Query: 684 -AYVAQS----PWIQSGKIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGE 738
A V Q+ P + + DNI FG ++ R+ +D + + E+L ++
Sbjct: 74 IAMVFQNYALYPHM---TVYDNIAFGLKL-RKVPKDEIDE-RVREVAELLQIE--HLLDR 126
Query: 739 RGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEV--LLGLLNSKTVL 796
+ LSGGQ+QR+ + RA+ ++ ++L D+P S +DA + E+ L L T +
Sbjct: 127 KPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLG-TTTI 185
Query: 797 YVTH-QVEFLPAADLVLVIKDGKITQAG 823
YVTH QVE + AD + V+ DG+I Q G
Sbjct: 186 YVTHDQVEAMTMADRIAVMNDGQIQQIG 213
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 84.3 bits (209), Expect = 6e-18
Identities = 58/211 (27%), Positives = 108/211 (51%), Gaps = 17/211 (8%)
Query: 1280 IVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSIIPQDPVMFEG-T 1338
I+G TGSGKS L++T+ ++P +G+IL++G DI+ L + +S +PQ+ +F T
Sbjct: 30 ILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDIT--NLPPEKRDISYVPQNYALFPHMT 87
Query: 1339 VRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKL--DSKVTENGENWSMGQRQLVCLG 1396
V N+ Y ++ DK ++ +V + L D + E S G++Q V +
Sbjct: 88 VYKNI----AYGLKKRKV--DKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIA 141
Query: 1397 RVLLKRRKILMLDEATASVDTATDNLIQQSLR--QHFSDCTVITIAHRITSV-IDSDMVL 1453
R L+ KIL+LDE +++D T +++ L+ + TV+ + H +D V
Sbjct: 142 RALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVA 201
Query: 1454 LLSHGLIEEYDSPRKLLENKSSSFSQLVAEY 1484
++ +G + + P ++ + + F VAE+
Sbjct: 202 IMLNGKLIQVGKPEEVFKKPKNEF---VAEF 229
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 88.2 bits (219), Expect = 8e-18
Identities = 60/222 (27%), Positives = 106/222 (47%), Gaps = 21/222 (9%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCIL-------GEV---------PKISGTL 677
P L I+ + G VA+ G G+GKS++L + G +
Sbjct: 277 PILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLR 336
Query: 678 KLCGTKAYVAQSPWIQSGKIEDNILFGKE-MDRERYNAVLDACSLEKDLEILSFGDQTVV 736
+ G V Q + + I NI +G+ E A +A + ++ L G T V
Sbjct: 337 RAIGI---VPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGV 393
Query: 737 GERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVL 796
GERG+ LSGG+KQR+ IAR + ++ I + D+ SA+D HT + L + +T L
Sbjct: 394 GERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHT-EQAIQAALREVSAGRTTL 452
Query: 797 YVTHQVEFLPAADLVLVIKDGKITQAGKYTDVINSGTDFMEL 838
+ H++ + AD ++V+ +G+I + G + +++ +G + E+
Sbjct: 453 VIAHRLSTIIDADEIIVLDNGRIVERGTHEELLAAGGLYAEM 494
|
Length = 497 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 83.6 bits (207), Expect = 9e-18
Identities = 66/241 (27%), Positives = 111/241 (46%), Gaps = 32/241 (13%)
Query: 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1307
+ L D++ Y H+P T P + I+G +G+GKSTL+ + PA+G+IL
Sbjct: 2 LALDDVRFSYG-HLPMRF---DLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEIL 57
Query: 1308 IDGIDISLIGLHDLRTRLSIIPQDPVMFEG-TVRSNVD----P---LEEYTDEQIWEALD 1359
I+G+D + +S++ Q+ +F TV N+ P L E++ A
Sbjct: 58 INGVDHT--ASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAA 115
Query: 1360 KCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTAT 1419
+ L +++ G+L S GQRQ V L R L++ + IL+LDE +++D A
Sbjct: 116 QVGLAGFLKRLPGEL-----------SGGQRQRVALARCLVREQPILLLDEPFSALDPAL 164
Query: 1420 DN----LIQQSLRQHFSDCTVITIAHRITSVIDS-DMVLLLSHGLIEEYDSPRKLLENKS 1474
L+ Q + T++ + H D V+ L +G I S ++LL K+
Sbjct: 165 RAEMLALVSQLCDE--RKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGKA 222
Query: 1475 S 1475
S
Sbjct: 223 S 223
|
Length = 231 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 83.8 bits (207), Expect = 9e-18
Identities = 55/213 (25%), Positives = 94/213 (44%), Gaps = 32/213 (15%)
Query: 628 DISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK---- 683
++ L +I+L V G +A+ G G GKS+LL + + SGTL G
Sbjct: 11 YLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTL 70
Query: 684 ---------AYVAQSPWIQSGKIEDNILF-----GKEMDRERYNAVLDACSLEKDLEILS 729
+Y AQ+P + +EDN++F + DR +L +L
Sbjct: 71 KPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFAL-------- 122
Query: 730 FGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL 789
+++ + LSGG+KQRI + R L I L D+ SA+D +E++
Sbjct: 123 --PDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESN-KRNIEEMIHRY 179
Query: 790 LNSK--TVLYVTH-QVEFLPAADLVLVIKDGKI 819
+ + VL++TH + + + AD V+ ++ G
Sbjct: 180 VREQNVAVLWITHDKDQAIRHADKVITLQPGHA 212
|
Length = 223 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 86.0 bits (213), Expect = 9e-18
Identities = 55/210 (26%), Positives = 101/210 (48%), Gaps = 24/210 (11%)
Query: 1280 IVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSIIPQDPVMF-EGT 1338
++G +G GK+TL++ L +P +G I++DG D++ + H ++++ Q +F T
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPH--LRHINMVFQSYALFPHMT 58
Query: 1339 VRSNVD-PLE------EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQ 1391
V NV L+ ++ EAL QL + +K +L S GQ+Q
Sbjct: 59 VEENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQL-----------SGGQQQ 107
Query: 1392 LVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLR--QHFSDCTVITIAHRITSVID- 1448
V L R L+ + KIL+LDE +++D + +Q L+ Q T + + H +
Sbjct: 108 RVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTM 167
Query: 1449 SDMVLLLSHGLIEEYDSPRKLLENKSSSFS 1478
SD + ++ G I + +P ++ E ++ F
Sbjct: 168 SDRIAIMRKGKIAQIGTPEEIYEEPANLFV 197
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 83.3 bits (207), Expect = 1e-17
Identities = 64/242 (26%), Positives = 103/242 (42%), Gaps = 43/242 (17%)
Query: 618 IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTL 677
IE+ S+ LK ++L V G +A+ G GSGKS+LL I+G + SG +
Sbjct: 1 IELRGLTKSFG---GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEV 57
Query: 678 KLCGTKAYVAQSPWI-----------QSG------KIEDNILF--------GKEMDRERY 712
+ G + QSG + +N+ F +E RE
Sbjct: 58 LIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIV 117
Query: 713 NAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSA 772
L+A L ++ E LSGG K+R+ +ARAL D ++ L+D+P +
Sbjct: 118 LEKLEAVGLRGAEDLY-------PAE----LSGGMKKRVALARALALDPELLLYDEPTAG 166
Query: 773 VDAHTGSHLFKEVLLGLLNSK--TVLYVTHQVEF-LPAADLVLVIKDGKITQAGKYTDVI 829
+D S + +++ L T + VTH ++ AD + V+ DGKI G ++
Sbjct: 167 LDPIA-SGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELR 225
Query: 830 NS 831
S
Sbjct: 226 AS 227
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 85.8 bits (213), Expect = 1e-17
Identities = 61/245 (24%), Positives = 106/245 (43%), Gaps = 44/245 (17%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILG-EVPKISGTLKLCGTK----------- 683
L D++L++ G + G G+GKS+LL I E P SG++ + G
Sbjct: 22 LDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPT-SGSVFVDGQDLTALSEAELRQ 80
Query: 684 -----AYVAQSPWIQSGK-IEDNILFGKEMDR----ERYNAVLDACSLEKDLEILSFGDQ 733
+ Q + S + + +N+ F E+ E V + L + + D+
Sbjct: 81 LRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLEL---VGLSDKADR 137
Query: 734 TVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSK 793
LSGGQKQR+ IARAL + I L D+ SA+D T + + LL +N +
Sbjct: 138 YPA-----QLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILE--LLKDINRE 190
Query: 794 ---TVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYTDV-INSGTDFMELVDAHKQALST 848
T++ +TH++E + D V V+ G++ + G ++V N ++ +
Sbjct: 191 LGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFANPKHAIT------QEFIGE 244
Query: 849 LDSIE 853
I+
Sbjct: 245 TLEID 249
|
Length = 339 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 84.8 bits (210), Expect = 1e-17
Identities = 70/236 (29%), Positives = 122/236 (51%), Gaps = 27/236 (11%)
Query: 1248 IDLRDLQVRYAPHMP-FVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQI 1306
I++++L +Y + L +S + I+G GSGKST ++ + ++E +GQI
Sbjct: 5 IEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQI 64
Query: 1307 LIDGIDISLIGLHDLRTRLSIIPQDP-VMFEG-TVRSNVD--------PLEEYTDEQIWE 1356
+IDG ++ + D+R ++ ++ Q+P F G TV +V P EE E++ E
Sbjct: 65 IIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMK-ERVNE 123
Query: 1357 ALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVD 1416
AL+ + D ++ +L S GQ+Q V + + R KI++LDEAT+ +D
Sbjct: 124 ALELVGMQDFKEREPARL-----------SGGQKQRVAIAGAVAMRPKIIILDEATSMLD 172
Query: 1417 -TATDNLIQ--QSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKL 1469
LI+ + +R + TVI+I H + V SD VL++ +G +E +PR+L
Sbjct: 173 PEGRLELIKTIKGIRDDY-QMTVISITHDLDEVALSDRVLVMKNGQVESTSTPREL 227
|
Length = 279 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 88.0 bits (219), Expect = 1e-17
Identities = 57/213 (26%), Positives = 100/213 (46%), Gaps = 42/213 (19%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPW--IQ 693
L ++L V G A+ G G+GKS+L+ + G P SG + + G K SP +
Sbjct: 24 LDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDG-KPVAFSSPRDALA 82
Query: 694 SG--------------KIEDNILFGKE-------MD----RERYNAVLDACSLEKDLEIL 728
+G + +NI G+E +D R R +L L+ D +
Sbjct: 83 AGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPD-- 140
Query: 729 SFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLG 788
T+VG +LS Q+Q ++IARAL DA + + D+P +A+ LF ++
Sbjct: 141 -----TLVG----DLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFD-LIRR 190
Query: 789 LLNS-KTVLYVTHQVEFLPA-ADLVLVIKDGKI 819
L ++Y++H+++ + AD + V++DG++
Sbjct: 191 LKAQGVAIIYISHRLDEVFEIADRITVLRDGRV 223
|
Length = 500 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 84.9 bits (210), Expect = 1e-17
Identities = 72/248 (29%), Positives = 122/248 (49%), Gaps = 36/248 (14%)
Query: 1248 IDLRDLQVRYAPHMPFVLRG-ISCTFPGEKKT--GIVGRTGSGKSTLIQTLFRIVEPAAG 1304
I ++ Y+P P +G + +F E+ + +VG TGSGKSTL+Q +++P++G
Sbjct: 3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSG 62
Query: 1305 QILIDGIDISL----IGLHDLRTRLSIIPQDP--VMFEGTVRSNVD--PL-----EEYTD 1351
I I G I+ L LR ++S++ Q P +FE TV +V+ P E+
Sbjct: 63 TITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAK 122
Query: 1352 EQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEA 1411
E+ + L K L +++ K S +G GQ + V + V+ +IL LDE
Sbjct: 123 EKALKWLKKVGLSEDLISK-----SPFELSG-----GQMRRVAIAGVMAYEPEILCLDEP 172
Query: 1412 TASVDTATDNLIQQSLRQHFSDC-----TVITIAHRITSVID-SDMVLLLSHGLIEEYDS 1465
A +D ++ + Q F D TVI + H + V + +D VL+L HG + ++ S
Sbjct: 173 AAGLDPEG----RKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHAS 228
Query: 1466 PRKLLENK 1473
P+++ +K
Sbjct: 229 PKEIFSDK 236
|
Length = 287 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 82.6 bits (205), Expect = 2e-17
Identities = 60/225 (26%), Positives = 94/225 (41%), Gaps = 52/225 (23%)
Query: 631 SHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK------- 683
L D++ + G + + G GSGKS+L ILG + SG++ G
Sbjct: 16 GSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRR 75
Query: 684 ---------AYVAQ------SPWIQSGKIEDNI-----LFGKEMDRERYNAV--LDACSL 721
V Q +P + I + I + GK +E L +
Sbjct: 76 LRKIRRKEIQMVFQDPMSSLNPRM---TIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGV 132
Query: 722 EKDLEIL-SFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGS- 779
E+L + + LSGGQ+QR+ IARAL + + + D+P SA+D +
Sbjct: 133 GLPEEVLNRYPHE---------LSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQ 183
Query: 780 --HLFKEV--LLGLLNSKTVLYVTHQVEFLPA-ADLVLVIKDGKI 819
L K++ LGL T+L++TH + + AD V V+ GKI
Sbjct: 184 ILDLLKKLQEELGL----TLLFITHDLGVVAKIADRVAVMYAGKI 224
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 82.6 bits (205), Expect = 3e-17
Identities = 64/225 (28%), Positives = 102/225 (45%), Gaps = 41/225 (18%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILG-EVPKISGTLKLCGT-------KAY 685
LKD++L V G + G G+GKS+L+ CI G E P SG++ + GT K
Sbjct: 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT-SGSVLVDGTDLTLLSGKEL 77
Query: 686 VAQSPWI----------QSGKIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQTV 735
I S + +N+ E+ + E+ LE+L
Sbjct: 78 RKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIE-----ERVLELLEL----- 127
Query: 736 VG--ERG----INLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL 789
VG ++ LSGGQKQR+ IARAL + + L D+ SA+D T + LL
Sbjct: 128 VGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILA--LLRD 185
Query: 790 LNSK---TVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYTDVIN 830
+N + T++ +TH++E + D V V++ G++ + G +V
Sbjct: 186 INRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 83.2 bits (206), Expect = 3e-17
Identities = 67/243 (27%), Positives = 120/243 (49%), Gaps = 35/243 (14%)
Query: 1251 RDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRI---VEPA--AGQ 1305
+DL V Y ++GI F K T ++G +GSGKST +++L R+ ++ A GQ
Sbjct: 24 KDLHVYYGKKE--AIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQ 81
Query: 1306 ILIDGIDISL--IGLHDLRTRLSIIPQDPVMFEGTVRSNVD-PLE-------EYTDEQIW 1355
IL GIDI+ I ++++R + ++ Q P F ++ N+ LE + DE +
Sbjct: 82 ILYRGIDINRKEINVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVE 141
Query: 1356 EALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASV 1415
+L + L D+V+ K S +T +G GQ+Q +C+ R + + IL++DE +++
Sbjct: 142 TSLKQAALWDQVKDDLHK--SALTLSG-----GQQQRLCIARAIAVKPDILLMDEPASAL 194
Query: 1416 DTATDNLIQQSLRQHFSDCTVITIAH------RITSVIDSDMVLLLSHGLIEEYDSPRKL 1469
D + +++++ + + T+I + H R SD G + EYD R +
Sbjct: 195 DPISTMQLEETMFELKKNYTIIIVTHNMQQAARA-----SDYTAFFYLGDLIEYDKTRNI 249
Query: 1470 LEN 1472
N
Sbjct: 250 FTN 252
|
Length = 267 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 79.8 bits (198), Expect = 4e-17
Identities = 45/192 (23%), Positives = 81/192 (42%), Gaps = 53/192 (27%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSG 695
L ++L V G A+ G G+GKS+L+ + G SG + + G +
Sbjct: 16 LDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEV----------- 64
Query: 696 KIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGIN----LSGGQKQRI 751
+ + DA GI LS G++Q +
Sbjct: 65 ---------------SFASPRDA------------------RRAGIAMVYQLSVGERQMV 91
Query: 752 QIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNS--KTVLYVTHQV-EFLPAA 808
+IARAL ++A + + D+P +A+ LFK ++ L + V++++H++ E A
Sbjct: 92 EIARALARNARLLILDEPTAALTPAEVERLFK--VIRRLRAQGVAVIFISHRLDEVFEIA 149
Query: 809 DLVLVIKDGKIT 820
D V V++DG++
Sbjct: 150 DRVTVLRDGRVV 161
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 86.6 bits (215), Expect = 4e-17
Identities = 50/206 (24%), Positives = 96/206 (46%), Gaps = 28/206 (13%)
Query: 1246 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQ 1305
I L +L +R L ++ ++ I G +G+GK++L++ L + +G+
Sbjct: 391 HGITLENLSLRTPDGQTL-LSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGR 449
Query: 1306 ILIDGIDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNV---DPLEEYTDEQIWEALDKCQ 1362
I + L +PQ P + +GT+R + + +++D ++ L K
Sbjct: 450 ISMPADSALLF-----------LPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVG 498
Query: 1363 LGDEVRKKEGKLDSKVTENGENWSM----GQRQLVCLGRVLLKRRKILMLDEATASVDTA 1418
LGD + + + W G++Q + R+LL + K + LDEAT+++D
Sbjct: 499 LGDLAERLDEEDR---------WDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEE 549
Query: 1419 TDNLIQQSLRQHFSDCTVITIAHRIT 1444
T++ + Q L++ D TVI++ HR T
Sbjct: 550 TEDRLYQLLKEELPDATVISVGHRPT 575
|
Length = 604 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 82.4 bits (204), Expect = 5e-17
Identities = 63/219 (28%), Positives = 110/219 (50%), Gaps = 34/219 (15%)
Query: 1243 PSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVE-- 1300
+ KI +R+L Y L+ I+ + T +G +G GKSTL++T R+ E
Sbjct: 9 TAPSKIQVRNLNFYYGKFH--ALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELY 66
Query: 1301 P---AAGQILIDG-------IDISLIGLHDLRTRLSIIPQDPVMFEGTVRSN----VDPL 1346
P A G+IL+DG DI+L LR ++ ++ Q P F ++ N V
Sbjct: 67 PEQRAEGEILLDGENILTPKQDIAL-----LRAKVGMVFQKPTPFPMSIYDNIAFGVRLF 121
Query: 1347 EEYT----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKR 1402
E+ + DE++ AL K L +EV+ K+ ++G + S GQ+Q +C+ R + R
Sbjct: 122 EKLSRAEMDERVEWALTKAALWNEVK-------DKLHQSGYSLSGGQQQRLCIARGIAIR 174
Query: 1403 RKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAH 1441
++L+LDE +++D + I++ + + D TV+ + H
Sbjct: 175 PEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTH 213
|
Length = 260 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 84.4 bits (209), Expect = 5e-17
Identities = 71/248 (28%), Positives = 110/248 (44%), Gaps = 51/248 (20%)
Query: 638 DINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYV----------- 686
+ +L + G + G GSGKS+LL + G P G++ + V
Sbjct: 42 NASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATLR 101
Query: 687 --------------AQSPWIQSGKIEDNILFGKEM----DRERYNAVLDACSLEKDLEIL 728
A PW +E+N+ FG EM ER V ++ LE++
Sbjct: 102 RLRTHRVSMVFQQFALLPWRT---VEENVAFGLEMQGMPKAERRKRV------DEQLELV 152
Query: 729 SFGD--QTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVL 786
GE LSGG +QR+ +ARA +A I L D+PFSA+D + L E L
Sbjct: 153 GLAQWADRKPGE----LSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDE-L 207
Query: 787 LGL---LNSKTVLYVTHQV-EFLPAADLVLVIKDGKITQAGKYTD-VINSGTDFMELVDA 841
L L L KT+++V+H + E L + + +++ G+I Q G + V+N D++ A
Sbjct: 208 LELQSKLK-KTIVFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDYVADFVA 266
Query: 842 HKQALSTL 849
H L+ L
Sbjct: 267 HTNPLNVL 274
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 86.2 bits (214), Expect = 6e-17
Identities = 65/246 (26%), Positives = 112/246 (45%), Gaps = 22/246 (8%)
Query: 610 PRGSSETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGE 669
P +E+ + F + P +++ +L + G RVA+ G GSGKS++ + G
Sbjct: 470 PSPRLSGYVELRNITFGYSPLE-PPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGL 528
Query: 670 VPKISGTLKLCGTK-------------AYVAQSPWIQSGKIEDNI-LFGKEM-DRERYNA 714
SG + G A V Q ++ G + DN+ L+ + D + A
Sbjct: 529 YQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRA 588
Query: 715 VLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVD 774
DA + + G + E G NLSGGQ+QR++IARAL ++ I + D+ SA+D
Sbjct: 589 CKDAA-IHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALD 647
Query: 775 AHTGSHLFKEVLLGLLNSK-TVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVINSGT 833
T K + L T + V H++ + D ++V++ GK+ Q G + ++ G
Sbjct: 648 PETE----KIIDDNLRRRGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWAVGG 703
Query: 834 DFMELV 839
+ L+
Sbjct: 704 AYARLI 709
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 83.1 bits (206), Expect = 6e-17
Identities = 65/249 (26%), Positives = 120/249 (48%), Gaps = 23/249 (9%)
Query: 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1307
I+ ++ RY + ++ T + ++G +GSGK+T ++ + R++EP +G+IL
Sbjct: 2 IEFENVSKRYGNK--KAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEIL 59
Query: 1308 IDGIDISLIGLHDLRTRLSIIPQDPVMFEG-TVRSN---VDPLEEYTDEQI----WEALD 1359
IDG DIS + +LR ++ + Q +F TV N V L + E+I E LD
Sbjct: 60 IDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLD 119
Query: 1360 KCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTAT 1419
L + + + ++ S GQ+Q V + R L IL++DE ++D T
Sbjct: 120 LVGL--DPSEYADRYPHEL-------SGGQQQRVGVARALAADPPILLMDEPFGALDPIT 170
Query: 1420 DNLIQQSLR--QHFSDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLENKSSS 1476
+Q+ ++ Q T++ + H I + +D + ++ G I +YD+P ++L N ++
Sbjct: 171 RKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPAND 230
Query: 1477 F-SQLVAEY 1484
F E
Sbjct: 231 FVEDFFGES 239
|
Length = 309 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 80.7 bits (200), Expect = 7e-17
Identities = 51/186 (27%), Positives = 88/186 (47%), Gaps = 36/186 (19%)
Query: 1248 IDLRDLQVRYAPHMPFVLRGISCTF-PGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQI 1306
I++++L + VL+GI T GE I+G +GSGKSTL++ + + EP +G I
Sbjct: 1 IEIKNLHKSFGDFH--VLKGIDLTVKKGEV-VVIIGPSGSGKSTLLRCINLLEEPDSGTI 57
Query: 1307 LIDGIDI--SLIGLHDLRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIW--------- 1355
+IDG+ + +++LR ++ ++ Q +F ++ LE T I
Sbjct: 58 IIDGLKLTDDKKNINELRQKVGMVFQQFNLFP-----HLTVLENITLAPIKVKGMSKAEA 112
Query: 1356 -----EALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDE 1410
E L+K L D+ +L S GQ+Q V + R L K+++ DE
Sbjct: 113 EERALELLEKVGLADKADAYPAQL-----------SGGQQQRVAIARALAMNPKVMLFDE 161
Query: 1411 ATASVD 1416
T+++D
Sbjct: 162 PTSALD 167
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 84.4 bits (209), Expect = 7e-17
Identities = 67/241 (27%), Positives = 107/241 (44%), Gaps = 51/241 (21%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG-------------- 681
+ D +L V G + G GSGKS+L+ + + G + + G
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELREL 103
Query: 682 ---TKAYVAQS----PWIQSGKIEDNILFGKEMD-------RERYNAVLDACSLEKDLEI 727
+ V QS P + +N+ FG E+ ER L+ LE
Sbjct: 104 RRKKISMVFQSFALLPHRT---VLENVAFGLEVQGVPKAEREERALEALELVGLEG---- 156
Query: 728 LSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLL 787
+ D+ E LSGG +QR+ +ARAL D DI L D+ FSA+D + + ++ LL
Sbjct: 157 --YADK-YPNE----LSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEM-QDELL 208
Query: 788 GLLNS--KTVLYVTHQV-EFLPAADLVLVIKDGKITQAGKYTDVINSG-----TDFMELV 839
L KT++++TH + E L D + ++KDG+I Q G +++ + DF+ V
Sbjct: 209 ELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLNPANDYVRDFVRNV 268
Query: 840 D 840
D
Sbjct: 269 D 269
|
Length = 386 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 80.4 bits (199), Expect = 7e-17
Identities = 58/202 (28%), Positives = 98/202 (48%), Gaps = 27/202 (13%)
Query: 635 TLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKA---------- 684
L D++L ++ G +A+ G G+GK++L + G + + SG++ L G
Sbjct: 15 ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIG 74
Query: 685 YVAQSPWIQ--SGKIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGIN 742
YV Q Q + + + +L G +E A ++ KDL++ + ++ ++
Sbjct: 75 YVMQDVDYQLFTDSVREELLLG---LKELDAGNEQAETVLKDLDLYALKER-----HPLS 126
Query: 743 LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTG---SHLFKEVLLGLLNSKTVLYVT 799
LSGGQKQR+ IA AL D+ +FD+P S +D L +E+ K V+ +T
Sbjct: 127 LSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIREL---AAQGKAVIVIT 183
Query: 800 HQVEFLP-AADLVLVIKDGKIT 820
H EFL D VL++ +G I
Sbjct: 184 HDYEFLAKVCDRVLLLANGAIV 205
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 82.1 bits (203), Expect = 8e-17
Identities = 60/242 (24%), Positives = 115/242 (47%), Gaps = 28/242 (11%)
Query: 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1307
I +++ +Y F L+ +S P + T IVG GSGKST+ + + I + +G+I
Sbjct: 8 IVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIF 67
Query: 1308 IDGIDISLIGLHDLRTRLSIIPQDPV-MFEG-TVRSNVD--------PLEEYTDEQIWEA 1357
+ I+ LR + I+ Q+P F G V+ +V P +E ++ EA
Sbjct: 68 YNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDE-MHRRVSEA 126
Query: 1358 LDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVD- 1416
L + + + + L S GQ+Q V + VL +++LDEAT+ +D
Sbjct: 127 LKQVDMLERADYEPNAL-----------SGGQKQRVAIAGVLALNPSVIILDEATSMLDP 175
Query: 1417 TATDNLIQQSLRQHFS---DCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENK 1473
A NL+ L + + T+I+I H ++ +++D V++++ G + + +P ++ ++
Sbjct: 176 DARQNLL--DLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDHA 233
Query: 1474 SS 1475
Sbjct: 234 EE 235
|
Length = 269 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.4 bits (202), Expect = 9e-17
Identities = 54/221 (24%), Positives = 97/221 (43%), Gaps = 29/221 (13%)
Query: 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQI 1306
+++ + + VL I+ + + I+G +G GKSTL++ + + +P +G++
Sbjct: 3 LLEIEGVSKSFGGVE--VLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEV 60
Query: 1307 LIDGIDISLIGLHDLRTRLSIIPQDPVMFEG-TVRSNVD-PLE------EYTDEQIWEAL 1358
L+DG ++ G + + Q+ + TV NV LE E+ E L
Sbjct: 61 LLDGRPVTGPGP-----DIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELL 115
Query: 1359 DKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTA 1418
+ L K +L S G RQ V + R L R K+L+LDE ++D
Sbjct: 116 ELVGLAGFEDKYPHQL-----------SGGMRQRVAIARALATRPKLLLLDEPFGALDAL 164
Query: 1419 TDNLIQQSLRQ--HFSDCTVITIAHRITSVID-SDMVLLLS 1456
T +Q L + + TV+ + H + + +D V++LS
Sbjct: 165 TREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLS 205
|
Length = 248 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 80.4 bits (199), Expect = 9e-17
Identities = 63/225 (28%), Positives = 93/225 (41%), Gaps = 57/225 (25%)
Query: 636 LKDINLKV---FHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWI 692
L D LK+ + + G G+GKS+LL CI G GT+ L GT
Sbjct: 10 LPDFTLKIDFDLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGT-------VLF 62
Query: 693 QSGK-------------------------IEDNILFG-----KEMDRERYNAVLDACSLE 722
S K + +N+ FG DR + +LD L+
Sbjct: 63 DSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLD 122
Query: 723 KDLEILSFGDQTVVGERGI-NLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHL 781
+ R LSGG+KQR+ +ARAL ++ L D+PFSA+D L
Sbjct: 123 H------------LLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQL 170
Query: 782 FKEV--LLGLLNSKTVLYVTHQ-VEFLPAADLVLVIKDGKITQAG 823
E+ + LN V++VTH E AD ++V++DG++ G
Sbjct: 171 LPELKQIKKNLN-IPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 1e-16
Identities = 62/208 (29%), Positives = 94/208 (45%), Gaps = 31/208 (14%)
Query: 617 AIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCI-----LGEVP 671
AIEI + N + LK+INL + A+ G G GKS+LL + L
Sbjct: 1 AIEIENLNLFY---GEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGV 57
Query: 672 KISGTLKLCGTKAY---------------VAQSPWIQSGKIEDNILFGKEMDRERYNAVL 716
+I G + G Y V Q P I DNI +G + + L
Sbjct: 58 RIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKEL 117
Query: 717 DACSLEKDLEILSFGDQTVVGER----GINLSGGQKQRIQIARALYQDADIYLFDDPFSA 772
D +E+ L+ + D+ V +R + LSGGQ+QR+ IARAL + ++ L D+P SA
Sbjct: 118 DE-IVEESLKKAALWDE--VKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSA 174
Query: 773 VDAHTGSHLFKEVLLGLLNSKTVLYVTH 800
+D + +E++ L T++ VTH
Sbjct: 175 LDP-IATGKIEELIQELKKKYTIVIVTH 201
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.6 bits (200), Expect = 1e-16
Identities = 63/239 (26%), Positives = 110/239 (46%), Gaps = 29/239 (12%)
Query: 1248 IDLRDLQVRYAPHMPFVLRGISCTF-PGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQI 1306
I++++L + VL+GIS + GE I+G +GSGKSTL++ L + EP +G I
Sbjct: 3 IEIKNLSKSFGDKE--VLKGISLSVEKGEVVV-IIGPSGSGKSTLLRCLNGLEEPDSGSI 59
Query: 1307 LIDGIDISL-IGLHDLRTRLSIIPQDPVMFEG-TVRSNV---------DPLEEYTDEQIW 1355
+DG D+ + LR ++ ++ Q +F TV NV E ++ +
Sbjct: 60 TVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKAL- 118
Query: 1356 EALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASV 1415
E L+K L D+ +L S GQ+Q V + R L K+++ DE T+++
Sbjct: 119 ELLEKVGLADKADAYPAQL-----------SGGQQQRVAIARALAMDPKVMLFDEPTSAL 167
Query: 1416 DTATDNLIQQSLRQ-HFSDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLEN 1472
D + ++ T+I + H + + +D V+ + G I E P + +N
Sbjct: 168 DPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDN 226
|
Length = 240 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 80.9 bits (201), Expect = 1e-16
Identities = 61/235 (25%), Positives = 104/235 (44%), Gaps = 40/235 (17%)
Query: 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1307
+++R L R+ + L +S + + G++G G+GK+TL + + P +G +L
Sbjct: 1 LEVRGLTKRFGGLV--ALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVL 58
Query: 1308 IDGIDISLIGLHDLRTRLSIIP--QDPVMFEG-TVRSNVD-----------------PLE 1347
DG DI+ + H+ RL I Q P +F TV NV E
Sbjct: 59 FDGEDITGLPPHE-IARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREE 117
Query: 1348 EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILM 1407
E+ E L++ L D + G+L S GQ++ + + R L K+L+
Sbjct: 118 REARERAEELLERVGLADLADRPAGEL-----------SYGQQRRLEIARALATDPKLLL 166
Query: 1408 LDEATASVDTA-TDNLIQ--QSLRQHFSDCTVITIAHRITSVID-SDMVLLLSHG 1458
LDE A ++ T+ L + + LR+ TV+ + H + V+ +D V +L G
Sbjct: 167 LDEPAAGLNPEETEELAELIRELRER--GITVLLVEHDMDVVMSLADRVTVLDQG 219
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 81.4 bits (201), Expect = 1e-16
Identities = 68/244 (27%), Positives = 116/244 (47%), Gaps = 29/244 (11%)
Query: 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVE--PAA-- 1303
I+ +L+V Y + V++G+ P ++G +G GKSTL++T R++E A
Sbjct: 5 IETVNLRVYYGSNH--VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARV 62
Query: 1304 -GQILIDGIDISLIGLH--DLRTRLSIIPQDPVMFEG-TVRSNV----------DPLEEY 1349
G++ + G +I + ++R + ++ Q P F T+ NV +E
Sbjct: 63 EGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKE- 121
Query: 1350 TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLD 1409
DE++ AL K L DEV+ ++ + N S GQRQ + + R L + KIL++D
Sbjct: 122 LDERVEWALKKAALWDEVK-------DRLNDYPSNLSGGQRQRLVIARALAMKPKILLMD 174
Query: 1410 EATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRK 1468
E TA++D I++ L + + T++ + H SD V L G + E RK
Sbjct: 175 EPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRK 234
Query: 1469 LLEN 1472
+ EN
Sbjct: 235 VFEN 238
|
Length = 253 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 1e-16
Identities = 72/221 (32%), Positives = 107/221 (48%), Gaps = 23/221 (10%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILG-EVPKISGTLKLCGTKA-------- 684
L D++L + G VA+ G GSGK++LL I G E P SGT+ G A
Sbjct: 16 VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPD-SGTILFGGEDATDVPVQER 74
Query: 685 ---YVAQS-PWIQSGKIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERG 740
+V Q + + DN+ FG + + R +A K E+L + +R
Sbjct: 75 NVGFVFQHYALFRHMTVFDNVAFGLRV-KPRSERPPEAEIRAKVHELLKLVQLDWLADRY 133
Query: 741 IN-LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSK---TVL 796
LSGGQ+QR+ +ARAL + + L D+PF A+DA L + L L+ + T +
Sbjct: 134 PAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRR--WLRRLHDELHVTTV 191
Query: 797 YVTH-QVEFLPAADLVLVIKDGKITQAGKYTDVINS-GTDF 835
+VTH Q E L AD V+V+ G+I Q G +V + + F
Sbjct: 192 FVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDHPASPF 232
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 79.5 bits (197), Expect = 2e-16
Identities = 63/214 (29%), Positives = 104/214 (48%), Gaps = 26/214 (12%)
Query: 1264 VLRGISCTF-PGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDL- 1321
L+ ++ GE IVG +GSGKSTL+ L + +P +G++LI+G D++ + +L
Sbjct: 20 ALKDVNLEIEAGEF-VAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELA 78
Query: 1322 ---RTRLSIIPQD-PVMFEGTVRSNVD-PLE------EYTDEQIWEALDKCQLGDEVRKK 1370
R ++ + Q+ ++ + TV NV+ PL E L+ L D + KK
Sbjct: 79 KLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKK 138
Query: 1371 EGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQ- 1429
K +E S GQ+Q V + R L+ KI++ DE T ++D+ T + + LR+
Sbjct: 139 ------KPSE----LSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLREL 188
Query: 1430 -HFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 1462
T+I + H +D V+ L G IEE
Sbjct: 189 NKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222
|
Length = 226 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 79.5 bits (196), Expect = 2e-16
Identities = 56/206 (27%), Positives = 93/206 (45%), Gaps = 31/206 (15%)
Query: 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1307
+ L ++ Y P TF + T IVG +GSGKSTL+ + P +G++L
Sbjct: 1 VRLDKIRFSYG-EQPMHF---DLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVL 56
Query: 1308 IDGIDISLIGLHDLRTRLSIIPQDPVMFEG-TVRSNVD-------PLEEYTDEQIWEALD 1359
I+G+D++ +S++ Q+ +F TV NV L + I AL
Sbjct: 57 INGVDVTA--APPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALA 114
Query: 1360 KCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTAT 1419
+ L ++ G+L S G+RQ V L RVL++ + +L+LDE A++D A
Sbjct: 115 RVGLAGLEKRLPGEL-----------SGGERQRVALARVLVRDKPVLLLDEPFAALDPAL 163
Query: 1420 DN----LIQQSLRQHFSDCTVITIAH 1441
L+ + + TV+ + H
Sbjct: 164 RAEMLDLVLDLHAE--TKMTVLMVTH 187
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 82.4 bits (204), Expect = 2e-16
Identities = 71/214 (33%), Positives = 96/214 (44%), Gaps = 42/214 (19%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILG-EVPKISGTLKLCG---------TKAY 685
LKDI+L V G V + G G GK++LL I G E +GT+ G + Y
Sbjct: 20 LKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQT-AGTIYQGGRDITRLPPQKRDY 78
Query: 686 --VAQS----PWIQSGKIEDNI---LFGKEMDRERYNAVLDACSLEKDLEILSFGDQTVV 736
V QS P + + DNI L + M R E+ E+L
Sbjct: 79 GIVFQSYALFP---NLTVADNIAYGLKNRGMGRAEVA--------ERVAELLDLVGLPGS 127
Query: 737 GERGIN-LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVL-----LGLL 790
+ LSGGQ+QR+ +ARAL + L D+P SA+DA HL E+ LG+
Sbjct: 128 ERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGV- 186
Query: 791 NSKTVLYVTH-QVEFLPAADLVLVIKDGKITQAG 823
T + VTH Q E L AD ++V+ G I Q G
Sbjct: 187 ---TTIMVTHDQEEALSMADRIVVMNHGVIEQVG 217
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.0 bits (198), Expect = 3e-16
Identities = 55/239 (23%), Positives = 96/239 (40%), Gaps = 62/239 (25%)
Query: 633 NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWI 692
L +++L++ G + + G GSGKS+L + G + P
Sbjct: 20 FHALNNVSLEIERGETLGIVGESGSGKSTLARLLAG------------------LEKPSS 61
Query: 693 QSGKIEDNILFGKEMDRERYNAV------------------------LDACSL----EKD 724
S ++ L K+ + Y V L L ++
Sbjct: 62 GSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRI 121
Query: 725 LEIL-SFGDQTVVGERGIN-LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLF 782
E+L G +R + LSGGQ+QRI IARAL + + + D+P SA+D
Sbjct: 122 AELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQ---- 177
Query: 783 KEVLLGLLNSK-----TVLYVTHQ---VEFLPAADLVLVIKDGKITQAGKYTDVINSGT 833
++L LL K T L+++H VE + D + V+ +G+I + G ++++ +
Sbjct: 178 AQILNLLLELKKERGLTYLFISHDLALVEHM--CDRIAVMDNGQIVEIGPTEELLSHPS 234
|
Length = 252 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 79.6 bits (196), Expect = 4e-16
Identities = 63/240 (26%), Positives = 110/240 (45%), Gaps = 16/240 (6%)
Query: 618 IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTL 677
I+I D ++ ++ P LK + + G +V +CG GSGKSSL V G +
Sbjct: 20 IKIHDLCVRYE-NNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKI 78
Query: 678 KLCGTK-------------AYVAQSPWIQSGKIEDNILFGKEMDRERYNAVLDACSLEKD 724
+ G + + Q P + SG I N+ + +R L+ L+
Sbjct: 79 VIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNM 138
Query: 725 LEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKE 784
++ L G VV E G N S GQ+Q +ARA + + I + D+ +++D T ++ ++
Sbjct: 139 VKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMAT-ENILQK 197
Query: 785 VLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVI-NSGTDFMELVDAHK 843
V++ +TV+ + H+V + ADLVLV+ G + + +++ F LV K
Sbjct: 198 VVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLVRTDK 257
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 79.7 bits (196), Expect = 4e-16
Identities = 61/231 (26%), Positives = 113/231 (48%), Gaps = 26/231 (11%)
Query: 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVE-----PA 1302
I +D+ + Y + L GIS F ++ T ++G +G GKST ++ L R+ +
Sbjct: 5 ISAKDVHLSYGNYE--ALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKI 62
Query: 1303 AGQILIDGIDI--SLIGLHDLRTRLSIIPQDPVMFEGTVRSNVD--------PLEEYTDE 1352
G+I +G +I S + L +LR + ++ Q P F +V NV +E D+
Sbjct: 63 TGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQ 122
Query: 1353 QIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEAT 1412
++ E+L + + E + + N + +S GQ+Q +C+ R L R K+++LDE T
Sbjct: 123 RVEESLKQAAIWKETK-------DNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPT 175
Query: 1413 ASVDTATDNLIQQSLRQHFSDCTVITIAHRI--TSVIDSDMVLLLSHGLIE 1461
+++D + + I+++L + T I + H + I L++ LIE
Sbjct: 176 SALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIE 226
|
Length = 251 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 78.6 bits (195), Expect = 5e-16
Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 39/183 (21%)
Query: 1248 IDLRDLQVRYAP-HMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQI 1306
+++ +L Y +L G+S T P + ++GR G+GK+TL++T+ ++ P +G I
Sbjct: 1 LEVENLNAGYGKSQ---ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSI 57
Query: 1307 LIDGIDISLIGLHDLRTRLSI--IPQDPVMFEG-TVRSNVDPLEEYTDEQIWEALDKCQL 1363
DG DI+ + H+ R R I +P+ +F TV N+ L
Sbjct: 58 RFDGRDITGLPPHE-RARAGIGYVPEGRRIFPELTVEENL------------------LL 98
Query: 1364 GDEVRKKEG-------------KLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDE 1410
G R++ +L + + S G++Q++ + R L+ R K+L+LDE
Sbjct: 99 GAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDE 158
Query: 1411 ATA 1413
+
Sbjct: 159 PSE 161
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 5e-16
Identities = 55/228 (24%), Positives = 102/228 (44%), Gaps = 29/228 (12%)
Query: 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1307
I+ ++ Y P+ L GI+ + + +VG +G+GKSTL++ +++ P +G I
Sbjct: 1 IEFINVTKTY-PNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIR 59
Query: 1308 IDGIDISLIGLHD-----LRTRLSIIPQD-PVMFEGTVRSNVDPLEEYTD-------EQI 1354
++G D+S L LR ++ ++ QD ++ + V NV E T +++
Sbjct: 60 VNGQDVS--DLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRV 117
Query: 1355 WEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATAS 1414
AL+ +G L K S G++Q V + R ++ IL+ DE T +
Sbjct: 118 PAALE--LVG---------LSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGN 166
Query: 1415 VDTATDNLIQQSLRQHFSDCTVITIAHRITSVID--SDMVLLLSHGLI 1460
+D T I L++ T + +A ++D V+ L G +
Sbjct: 167 LDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 79.6 bits (197), Expect = 6e-16
Identities = 68/244 (27%), Positives = 107/244 (43%), Gaps = 51/244 (20%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK------------ 683
+ D++L V G + G GSGKS+LL CI + SG + + G
Sbjct: 40 VNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELREL 99
Query: 684 -----AYVAQS----PWIQSGKIEDNILFG-------KEMDRERYNAVLDACSLEKDLEI 727
+ V QS P + +N+ FG + ER L+ LE
Sbjct: 100 RRKKISMVFQSFALLP---HRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEH- 155
Query: 728 LSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLL 787
+ D+ LSGG +QR+ +ARAL D DI L D+ FSA+D + ++ LL
Sbjct: 156 -KYPDE---------LSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREM-QDELL 204
Query: 788 GLLNS--KTVLYVTHQV-EFLPAADLVLVIKDGKITQAGKYTDVINSGTD-----FMELV 839
L KT++++TH + E L D + ++KDG++ Q G +++ + + F V
Sbjct: 205 RLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNPANDYVREFFRGV 264
Query: 840 DAHK 843
D K
Sbjct: 265 DRAK 268
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 77.9 bits (193), Expect = 6e-16
Identities = 49/204 (24%), Positives = 91/204 (44%), Gaps = 19/204 (9%)
Query: 630 SSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQS 689
P + D++L V+ G + G G+GK++ L + GE+ SGT + G +
Sbjct: 12 KGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGY--SIRTD 69
Query: 690 PWIQSGKI----EDNILFGKEMDRE--RYNAVL-----DACSLEKDLEILSFGDQTVVGE 738
+ + + LF + RE R+ A L E +L + G +
Sbjct: 70 RKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANK 129
Query: 739 RGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYV 798
R LSGG K+++ +A AL + L D+P S +D + ++ +++L + ++++
Sbjct: 130 RARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIW-DLILEVRKGRSIILT 188
Query: 799 THQ---VEFLPAADLVLVIKDGKI 819
TH E L D + ++ DGK+
Sbjct: 189 THSMDEAEAL--CDRIAIMSDGKL 210
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 78.7 bits (194), Expect = 8e-16
Identities = 59/216 (27%), Positives = 103/216 (47%), Gaps = 36/216 (16%)
Query: 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRI-----VEP 1301
K++ R L Y L IS F + T ++G +G GKST ++ L R+
Sbjct: 6 KMEARGLSFFYGDFQ--ALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGAR 63
Query: 1302 AAGQILIDGIDI--SLIGLHDLRTRLSIIPQDPVMFEGTVRSNV----------DPLEEY 1349
G+IL+DG +I + + +LR R+ ++ Q P F ++ NV D + Y
Sbjct: 64 VEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKD--KAY 121
Query: 1350 TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLD 1409
E++ +L L DEV+ ++ E+ S GQ+Q +C+ R L ++L++D
Sbjct: 122 LAERVERSLRHAALWDEVK-------DRLHESALGLSGGQQQRLCIARALAVEPEVLLMD 174
Query: 1410 EATASVD-TAT---DNLIQQSLRQHFSDCTVITIAH 1441
E +++D AT + LI + L+ + T+I + H
Sbjct: 175 EPASALDPIATQKIEELIHE-LKARY---TIIIVTH 206
|
Length = 253 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 77.1 bits (190), Expect = 1e-15
Identities = 49/204 (24%), Positives = 93/204 (45%), Gaps = 34/204 (16%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK---------- 683
P LK+++ KV G ++ + G G+GKS+L+ + + G +++ G
Sbjct: 22 PVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLR 81
Query: 684 ---AYVAQSPWIQSGKIEDNI-LFGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGER 739
+ Q P + SG I N+ F + D E Y A+ V E
Sbjct: 82 SSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGAL-------------------RVSEG 122
Query: 740 GINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVT 799
G+NLS GQ+Q + +ARAL + + + D+ +++D T L ++ + + T+L +
Sbjct: 123 GLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYAT-DALIQKTIREEFTNSTILTIA 181
Query: 800 HQVEFLPAADLVLVIKDGKITQAG 823
H++ + D +LV+ G++ +
Sbjct: 182 HRLRTIIDYDKILVMDAGEVKEYD 205
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 82.8 bits (204), Expect = 1e-15
Identities = 69/296 (23%), Positives = 137/296 (46%), Gaps = 65/296 (21%)
Query: 1225 IPSEPPLEIEESRPNHSWPSHGKIDLRDLQVRYAPHMPF-VLRGISCTFPGEKKTGIVGR 1283
I + PL +E + KI ++++ Y + + ++ T K VG
Sbjct: 361 IINRKPL-VENNDDGKKLKDIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGE 419
Query: 1284 TGSGKSTLIQTLFRIVEPAAGQILI-DGIDISLIGLHDLRTRLSIIPQDPVMFEGTVRSN 1342
+G GKST+++ + R+ +P G I+I D ++ I L R+++ ++ QDP++F ++++N
Sbjct: 420 SGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNN 479
Query: 1343 V----------DPLEEYTDEQIWEALD----------KC--QLGD-----------EVRK 1369
+ + L Y +E ++ + KC L D E+RK
Sbjct: 480 IKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRK 539
Query: 1370 K-------------------------EGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRK 1404
K ++ V N S GQ+Q + + R +++ K
Sbjct: 540 NYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPK 599
Query: 1405 ILMLDEATASVDTATDNLIQQS---LRQHFSDCTVITIAHRITSVIDSDMVLLLSH 1457
IL+LDEAT+S+D ++ L+Q++ L+ + + T+I IAHR++++ ++ + +LS+
Sbjct: 600 ILILDEATSSLDNKSEYLVQKTINNLKGNENRITII-IAHRLSTIRYANTIFVLSN 654
|
Length = 1466 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 81.5 bits (202), Expect = 1e-15
Identities = 52/227 (22%), Positives = 91/227 (40%), Gaps = 44/227 (19%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPW---- 691
+ D++ + G + + G GSGKS+L + G +P SG++ G +
Sbjct: 307 VDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLR 366
Query: 692 --IQ------------SGKIEDNI----LFGKEMDRERYNAVLDACSLEKDLEILSFGDQ 733
IQ + D + A + E+L +
Sbjct: 367 RRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVA--------ELL---EL 415
Query: 734 TVVGERGIN-----LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLG 788
+ ++ LSGGQ+QR+ IARAL + + + D+P SA+D + + LL
Sbjct: 416 VGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLN--LLK 473
Query: 789 LLNSK---TVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYTDVINS 831
L + T L+++H + + AD V V+ DG+I + G V +
Sbjct: 474 DLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFEN 520
|
Length = 539 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.0 bits (201), Expect = 1e-15
Identities = 58/229 (25%), Positives = 99/229 (43%), Gaps = 34/229 (14%)
Query: 1248 IDLRDLQVRYAPHMPFVLRGISCT-FPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQI 1306
++LR + + L G+S T PGE ++G G+GKSTL++ L + P +G+I
Sbjct: 9 LELRGISKSFGGVK--ALDGVSLTVRPGEV-HALLGENGAGKSTLMKILSGVYPPDSGEI 65
Query: 1307 LIDGIDISLIGLHDLRTR-LSIIPQDPVMFEG-TVRSN-------------VDPLEEYTD 1351
LIDG ++ D ++ + Q+ + +V N +D
Sbjct: 66 LIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMR-- 123
Query: 1352 EQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEA 1411
+ E L + L + G L S+ QRQ+V + R L ++L+LDE
Sbjct: 124 RRARELLARLGLDIDPDTLVGDL-----------SIAQRQMVEIARALSFDARVLILDEP 172
Query: 1412 TASVDTA-TDNLIQQSLRQHFSDCTVITIAHRITSVID-SDMVLLLSHG 1458
TA++ T+ L R +I I+HR+ V + +D + +L G
Sbjct: 173 TAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDG 221
|
Length = 500 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 77.1 bits (190), Expect = 1e-15
Identities = 64/215 (29%), Positives = 91/215 (42%), Gaps = 48/215 (22%)
Query: 638 DINLKVFHGMRVAVCGTVGSGKSSLLSCILG-EVPKISGTLKLCG---TKAYVAQSPWIQ 693
+L G A+ G GSGKS+LL+ I G E P+ SG + + G T A A P
Sbjct: 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQ-SGRVLINGVDVTAAPPADRP--V 72
Query: 694 SGKIEDNILFG------------------KEMDRERYNAVLDACSLEKDLEILSFGDQTV 735
S ++N LF DR+ L L + L
Sbjct: 73 SMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLP------ 126
Query: 736 VGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNS--- 792
GE LSGG++QR+ +AR L +D + L D+PF+A+D + +L L+
Sbjct: 127 -GE----LSGGERQRVALARVLVRDKPVLLLDEPFAALDP-----ALRAEMLDLVLDLHA 176
Query: 793 ---KTVLYVTHQVE-FLPAADLVLVIKDGKITQAG 823
TVL VTHQ E A V+ + +G+I G
Sbjct: 177 ETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 78.5 bits (193), Expect = 1e-15
Identities = 52/212 (24%), Positives = 108/212 (50%), Gaps = 24/212 (11%)
Query: 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAA--- 1303
+I++ +L + +L+ ++ P T ++G +G GKST I+TL R+ +
Sbjct: 3 RIEVENLNTYFDDAH--ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFR 60
Query: 1304 --GQILIDGIDI--SLIGLHDLRTRLSIIPQDPVMFEGTVRSNV--------DPLEEYTD 1351
G I +DG+DI + + +LR ++ ++ Q P F ++ NV + E++ +
Sbjct: 61 HEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIE 120
Query: 1352 EQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEA 1411
E++ E+L L DEV + KLD ++ S GQ+Q +C+ R + +++++DE
Sbjct: 121 ERVEESLKAAALWDEV---KDKLD----KSALGLSGGQQQRLCIARTIAVSPEVILMDEP 173
Query: 1412 TASVDTATDNLIQQSLRQHFSDCTVITIAHRI 1443
+++D + I+ + + D T++ + H +
Sbjct: 174 CSALDPISTTKIEDLIHKLKEDYTIVIVTHNM 205
|
Length = 250 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 1e-15
Identities = 64/252 (25%), Positives = 116/252 (46%), Gaps = 50/252 (19%)
Query: 1248 IDLRDLQVRYAPHMPFVLRGISCTF-PGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQI 1306
+++ +L Y P+ L+ I+ PGE I+G +G+GKSTL++ + R+VEP++G I
Sbjct: 2 LEVENLSKVY-PNGKQALKNINLNINPGEF-VAIIGPSGAGKSTLLRCINRLVEPSSGSI 59
Query: 1307 LIDGIDISLIGLHDLRT----------RLSIIPQDPVM---------FEGTVRSNVDPLE 1347
L++G DI+ + LR ++I + V+ ++ T RS +
Sbjct: 60 LLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFS 119
Query: 1348 EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILM 1407
E E+ AL++ L D+ ++ +L S GQ+Q V + R L ++ +++
Sbjct: 120 EEDKERALSALERVGLADKAYQRADQL-----------SGGQQQRVAIARALAQQPDLIL 168
Query: 1408 LDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVID----------SDMVLLLSH 1457
DE AS+D T + L++ I IT +I+ +D ++ L
Sbjct: 169 ADEPIASLDPKTSKQVMDYLKR-------INKEDGITVIINLHQVDLAKKYADRIVGLKA 221
Query: 1458 GLIEEYDSPRKL 1469
G I +P +L
Sbjct: 222 GEIVFDGAPSEL 233
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 1e-15
Identities = 67/219 (30%), Positives = 98/219 (44%), Gaps = 47/219 (21%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK------------ 683
LK+INL + G VA+ G G+GKS+LL CI V SG++ L GT
Sbjct: 18 LKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKL 77
Query: 684 ----AYVAQS-PWIQSGKIEDNILFG---------------KEMDRERYNAVLDACSLEK 723
+ Q I+ + +N+L G E D+ER A S +
Sbjct: 78 RRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKER------ALSALE 131
Query: 724 DLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFK 783
+ + Q R LSGGQ+QR+ IARAL Q D+ L D+P +++D T S
Sbjct: 132 RVGLADKAYQ-----RADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKT-SKQVM 185
Query: 784 EVLLGLLNSK--TVLYVTHQVEFLPA-ADLVLVIKDGKI 819
+ L + TV+ HQV+ AD ++ +K G+I
Sbjct: 186 DYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEI 224
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.8 bits (192), Expect = 1e-15
Identities = 52/203 (25%), Positives = 91/203 (44%), Gaps = 20/203 (9%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSG 695
++D++ + G + G G+GK++LL I + SG + + G + P
Sbjct: 18 VRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDT--VRDPSFVRR 75
Query: 696 KIEDNILFG-----KEMDRE---RYNAVLDACS---LEKDLEILS--FGDQTVVGERGIN 742
KI +LFG + +Y A L+ S ++ + LS + R
Sbjct: 76 KI--GVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGE 133
Query: 743 LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNS-KTVLYVTHQ 801
S G KQ++ IARAL D I + D+P S +D T F + + L N + V++ +H
Sbjct: 134 FSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRT-RRKFHDFIKQLKNEGRAVIFSSHI 192
Query: 802 VEFLPA-ADLVLVIKDGKITQAG 823
++ + A D V+V+ G++ G
Sbjct: 193 MQEVEALCDRVIVLHKGEVVLEG 215
|
Length = 245 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 79.1 bits (195), Expect = 1e-15
Identities = 70/282 (24%), Positives = 128/282 (45%), Gaps = 41/282 (14%)
Query: 1232 EIEESRPNHSWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTL 1291
+ + ++ + K+ + DL V Y L+G+S P + T ++G +G GKST
Sbjct: 30 QTRDEWTDYEFDGDAKLSVEDLDVYYGDDH--ALKGVSMDIPEKSVTALIGPSGCGKSTF 87
Query: 1292 IQTLFRI---VEPA--AGQILIDGIDISLIG--LHDLRTRLSIIPQDPVMFEGTVRSNVD 1344
++ L R+ ++ A G + +DG DI G L +LR R+ ++ Q P F ++R N+
Sbjct: 88 LRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFPKSIRENIS 147
Query: 1345 --PL------------------EEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGEN 1384
P ++ DE + +L + L DEV + +N
Sbjct: 148 YGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLD-------DNALG 200
Query: 1385 WSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRIT 1444
S GQ+Q +C+ R L +++++DE +++D + I+ + + + TV+ + H +
Sbjct: 201 LSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQ 260
Query: 1445 SV--IDSDMVLLLSHGLIEEYDSPRKLLENKSSSFSQLVAEY 1484
I + L+ G + EYD K+ EN SQ V +Y
Sbjct: 261 QAARISDQTAVFLTGGELVEYDDTDKIFENPE---SQRVEDY 299
|
Length = 305 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 80.1 bits (198), Expect = 1e-15
Identities = 66/214 (30%), Positives = 98/214 (45%), Gaps = 42/214 (19%)
Query: 637 KDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK-----------AY 685
KDINL + G V G G GKS+LL I G SG L + +
Sbjct: 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGM 79
Query: 686 VAQS----PWIQSGKIEDNILFG--------KEMDRERYNAVLDACSLEKDLEILSFGDQ 733
V QS P + + +N+ FG +E+++ R N V + L L+
Sbjct: 80 VFQSYALYPHLS---VAENMSFGLKLAGAKKEEINQ-RVNQVAEVLQLAHLLD------- 128
Query: 734 TVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEV--LLGLLN 791
+ LSGGQ+QR+ I R L + ++L D+P S +DA + E+ L L
Sbjct: 129 ----RKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLG 184
Query: 792 SKTVLYVTH-QVEFLPAADLVLVIKDGKITQAGK 824
T++YVTH QVE + AD ++V+ G++ Q GK
Sbjct: 185 R-TMIYVTHDQVEAMTLADKIVVLDAGRVAQVGK 217
|
Length = 369 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 81.1 bits (201), Expect = 2e-15
Identities = 55/235 (23%), Positives = 94/235 (40%), Gaps = 53/235 (22%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILG----EVPKISGTLKLCGTK-------- 683
++D++ +V G + + G GSGKS+L ++G SG + L G
Sbjct: 25 VRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84
Query: 684 ---------AYVAQSP---WIQSGKIEDNI--------LFGKEMDRERYNAVLDACSLEK 723
A + Q P I D I + R+R +L+ L
Sbjct: 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPD 144
Query: 724 DLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFK 783
+ Q LSGG +QR+ IA AL + + D+P +A+D T +
Sbjct: 145 PERRDRYPHQ---------LSGGMRQRVMIAMALALKPKLLIADEPTTALDVTT-----Q 190
Query: 784 EVLLGLL------NSKTVLYVTHQVEFLP-AADLVLVIKDGKITQAGKYTDVINS 831
+L LL VL++TH + + AD V+V+ G+I + G +++++
Sbjct: 191 AQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEILSN 245
|
Length = 539 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 76.8 bits (190), Expect = 2e-15
Identities = 44/199 (22%), Positives = 79/199 (39%), Gaps = 22/199 (11%)
Query: 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1307
+ +R+L Y + +S + G++G G+GK+T ++ L + P +G
Sbjct: 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAY 60
Query: 1308 IDGIDISLIGLHDLRTRLSIIPQDPVMFEG-TVRSNVD--------PLEEYTDEQIWEAL 1358
I+G I R L PQ +F+ TVR ++ P E +E L
Sbjct: 61 INGYSI-RTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELL-L 118
Query: 1359 DKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTA 1418
L D K + + S G ++ + L L+ +L+LDE T+ +D A
Sbjct: 119 RVLGLTD-------KANKRAR----TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPA 167
Query: 1419 TDNLIQQSLRQHFSDCTVI 1437
+ I + + ++I
Sbjct: 168 SRRAIWDLILEVRKGRSII 186
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 78.4 bits (193), Expect = 2e-15
Identities = 70/242 (28%), Positives = 116/242 (47%), Gaps = 30/242 (12%)
Query: 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1307
+ + +L Y L+GI+ + T I+G G+GKSTL Q L I++P++G+IL
Sbjct: 6 LKVEELNYNY-SDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRIL 64
Query: 1308 IDG--IDISLIGLHDLRTRLSIIPQDP--VMFEGTVRSNVDPLEEYTDEQIWEALDKCQL 1363
DG ID S GL LR + ++ QDP +F +V +V + A++
Sbjct: 65 FDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVS----------FGAVNLKLP 114
Query: 1364 GDEVRKKEGKLDSKVTENG--------ENW-SMGQRQLVCLGRVLLKRRKILMLDEATAS 1414
DEVRK ++D+ + G + S GQ++ V + VL+ K+L+LDE TA
Sbjct: 115 EDEVRK---RVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAG 171
Query: 1415 VDTATDNLIQQSLRQHFS--DCTVITIAHRITSV-IDSDMVLLLSHGLIEEYDSPRKLLE 1471
+D + I + L + T+I H I V + D V ++ G + +P+++
Sbjct: 172 LDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231
Query: 1472 NK 1473
K
Sbjct: 232 EK 233
|
Length = 283 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 81.3 bits (201), Expect = 2e-15
Identities = 65/221 (29%), Positives = 99/221 (44%), Gaps = 60/221 (27%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPK-ISGTLKLCG------------- 681
LK I+L ++ G VA+ G GSGKS+L++ ILG + K SGT ++ G
Sbjct: 24 LKGISLDIYAGEMVAIVGASGSGKSTLMN-ILGCLDKPTSGTYRVAGQDVATLDADALAQ 82
Query: 682 -------------------TKAYVAQSPWIQSGKIEDNILFGKEMDRERYNAVLDACSLE 722
T A + P + +G ++ R +L
Sbjct: 83 LRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGL-------ERKQRLLRAQELLQR---- 131
Query: 723 KDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLF 782
L D+ V + LSGGQ+QR+ IARAL + L D+P A+D+H+G
Sbjct: 132 -----LGLEDR--VEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSG---- 180
Query: 783 KEVL--LGLLNSK--TVLYVTHQVEFLPAADLVLVIKDGKI 819
+EV+ L L + TV+ VTH + A+ V+ I+DG+I
Sbjct: 181 EEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEI 221
|
Length = 648 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 2e-15
Identities = 53/181 (29%), Positives = 85/181 (46%), Gaps = 22/181 (12%)
Query: 1259 PHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDG--IDISLI 1316
P P VL+G++ + ++G G+GKSTL+ L ++ P +G +LIDG +D S
Sbjct: 2 PGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRK 61
Query: 1317 GLHDLRTRLSIIPQDP--VMFEGTVRSNVD--PL-----EEYTDEQIWEALDKCQLGDEV 1367
GL + R R+ ++ QDP +F V +V PL E + ++ EAL
Sbjct: 62 GLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASG-- 119
Query: 1368 RKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSL 1427
L + T S G+++ V + + R +L+LDE TA +D A + L
Sbjct: 120 ------LRERPT---HCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAIL 170
Query: 1428 R 1428
R
Sbjct: 171 R 171
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 77.4 bits (191), Expect = 2e-15
Identities = 70/207 (33%), Positives = 97/207 (46%), Gaps = 37/207 (17%)
Query: 632 HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILG-EVPKISGTLKLCGTKAYVAQS- 689
L ++L + G VAV G G GKS+LL + G E P +G L L GT A +A++
Sbjct: 24 ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPS-AGEL-LAGT-APLAEAR 80
Query: 690 -------------PWIQSGKIEDNILFGKEMD-RERYNAVLDACSLEKDLEILSFGDQTV 735
PW K+ DN+ G + R+ L A L
Sbjct: 81 EDTRLMFQDARLLPW---KKVIDNVGLGLKGQWRDAALQALAAVGLADR----------- 126
Query: 736 VGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSK-- 793
E LSGGQKQR+ +ARAL + L D+P A+DA T + ++++ L
Sbjct: 127 ANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEM-QDLIESLWQQHGF 185
Query: 794 TVLYVTHQV-EFLPAADLVLVIKDGKI 819
TVL VTH V E + AD VL+I++GKI
Sbjct: 186 TVLLVTHDVSEAVAMADRVLLIEEGKI 212
|
Length = 257 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 77.4 bits (191), Expect = 3e-15
Identities = 67/238 (28%), Positives = 121/238 (50%), Gaps = 26/238 (10%)
Query: 1247 KIDLRDLQVRYAPHMPFVLRGISCT-FPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQ 1305
I + + RY + L+ +S + + GE IVG GSGKSTL + L ++ P AG
Sbjct: 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEW-VAIVGHNGSGKSTLAKLLNGLLLPEAGT 63
Query: 1306 ILIDGIDISLIGLHDLRTRLSIIPQDP-VMFEG-TVRSNVD--------PLEEYTDEQIW 1355
I + G+ +S + D+R ++ ++ Q+P F G TV+ +V P EE E++
Sbjct: 64 ITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMV-ERVD 122
Query: 1356 EALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASV 1415
+AL + + D + ++ +L S GQ+Q V + VL + I++LDEAT+ +
Sbjct: 123 QALRQVGMEDFLNREPHRL-----------SGGQKQRVAIAGVLALQPDIIILDEATSML 171
Query: 1416 DTATDNLIQQSLRQ--HFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLE 1471
D + +++RQ TV++I H + +D V++++ G I E +P ++ +
Sbjct: 172 DPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFK 229
|
Length = 279 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 77.0 bits (189), Expect = 3e-15
Identities = 65/233 (27%), Positives = 114/233 (48%), Gaps = 25/233 (10%)
Query: 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFR---IVEPA- 1302
KI +R + Y H VL+ I+ FP + T I+G +G GKSTL++ L R IV A
Sbjct: 4 KIKIRGVNFFYHKHQ--VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGAR 61
Query: 1303 -AGQILIDGIDISLIGLH--DLRTRLSIIPQDPVMFEGTVRSNVD--------PLEEYTD 1351
G +L+D +I L +LR R+ ++ Q P F ++ NV + D
Sbjct: 62 LEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLD 121
Query: 1352 EQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEA 1411
E + ++L + L DEV+ + ++G S GQ+Q +C+ RVL +++++DE
Sbjct: 122 EVVEKSLRQAALWDEVK-------DNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEP 174
Query: 1412 TASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVI-DSDMVLLLSHGLIEEY 1463
+++D + I++ +++ + T+ + H + SD L G + EY
Sbjct: 175 CSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEY 227
|
Length = 251 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 76.1 bits (187), Expect = 4e-15
Identities = 51/186 (27%), Positives = 88/186 (47%), Gaps = 17/186 (9%)
Query: 1254 QVRYAPHMPFVLRGISCTF-PGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGID 1312
QV Y +L IS + GE I G +G GKSTL++ + ++ P +G +L +G D
Sbjct: 8 QVGYLAGDAKILNNISLSVRAGEFIA-ITGPSGCGKSTLLKIVASLISPTSGTLLFEGED 66
Query: 1313 ISLIGLHDLRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVR---- 1368
+S + R ++S Q P +F TV N+ I+ + + D
Sbjct: 67 VSTLKPEAYRQQVSYCAQTPALFGDTVEDNL----------IFPWQIRNRRPDRAAALDL 116
Query: 1369 -KKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSL 1427
+ DS +T+N S G++Q + L R L KIL+LDE T+++D + I++ +
Sbjct: 117 LARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMI 176
Query: 1428 RQHFSD 1433
++ +
Sbjct: 177 HRYVRE 182
|
Length = 223 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 75.8 bits (187), Expect = 4e-15
Identities = 64/205 (31%), Positives = 96/205 (46%), Gaps = 27/205 (13%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQS- 694
L DINL++ G V + G GSGK++LL+ I G G+LK+ G + Y A +
Sbjct: 21 LFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQL 80
Query: 695 ----GKI------------EDNILFGKEMDRERYNAVLDACSL-EKDLEILSFGDQTVVG 737
G I N+ E+ + + +A LE + GD +
Sbjct: 81 RRNIGYIFQAHNLLGFLTARQNVQMALEL-QPNLSY-QEARERARAMLEAVGLGDH--LD 136
Query: 738 ERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGS---HLFKEVLLGLLNSKT 794
NLSGGQKQR+ IARAL + L D+P +A+D+ +G L ++ L T
Sbjct: 137 YYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQK--LAREQGCT 194
Query: 795 VLYVTHQVEFLPAADLVLVIKDGKI 819
+L VTH L AD ++ ++DGK+
Sbjct: 195 ILIVTHDNRILDVADRIVHMEDGKL 219
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 77.1 bits (190), Expect = 4e-15
Identities = 66/257 (25%), Positives = 123/257 (47%), Gaps = 37/257 (14%)
Query: 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRI---VEPA-- 1302
I+ RDL V Y L +S P + T ++G +G GKST ++ + R+ ++ A
Sbjct: 40 IEARDLNVFYGDEQ--ALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARV 97
Query: 1303 AGQILIDGIDISLIGLHD-------LRTRLSIIPQDPVMFEGTVRSNV------DPLEEY 1349
G++ G ++ +D LR R+ ++ Q P F ++ NV +
Sbjct: 98 EGELTFRGKNV-----YDADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGD 152
Query: 1350 TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLD 1409
DE++ E+L + L DEV + +LDS +G + S GQ+Q +C+ R + +++++D
Sbjct: 153 IDERVEESLRRAALWDEV---KDQLDS----SGLDLSGGQQQRLCIARAIAPDPEVILMD 205
Query: 1410 EATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSV--IDSDMVLLLSHGLIEEYDSPR 1467
E +++D + I+ + + + TV+ + H + I + L+ G + E+D
Sbjct: 206 EPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTD 265
Query: 1468 KLLENKSSSFSQLVAEY 1484
K+ EN SQ V +Y
Sbjct: 266 KIFENPE---SQRVEDY 279
|
Length = 285 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 80.6 bits (199), Expect = 5e-15
Identities = 52/199 (26%), Positives = 98/199 (49%), Gaps = 14/199 (7%)
Query: 1264 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRT 1323
+LR +S + P K T ++G TGSGKSTL+Q+L E + G++ +
Sbjct: 675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE-------------R 721
Query: 1324 RLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGE 1383
++ +PQ + TVR N+ +E ++ +A+ QL ++ + G L++++ E G
Sbjct: 722 SIAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGV 781
Query: 1384 NWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLI-QQSLRQHFSDCTVITIAHR 1442
N S GQ+ V L R + R + +LD+ +++D + ++ + T + H+
Sbjct: 782 NLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQ 841
Query: 1443 ITSVIDSDMVLLLSHGLIE 1461
+ V +D V+ L G +E
Sbjct: 842 VHVVPRADYVVALGDGRVE 860
|
Length = 1560 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 5e-15
Identities = 59/248 (23%), Positives = 116/248 (46%), Gaps = 30/248 (12%)
Query: 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1307
+++R++ + + IS + ++G +G GK+TL++ + +P++G+IL
Sbjct: 6 LEIRNVSKSFGDF--TAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEIL 63
Query: 1308 IDGIDISLIGLHDLRTRLSIIPQDPVMFEG-TVRSNV--------DPLEEYTDEQIWEAL 1358
+DG DI+ + + + ++ Q +F TV NV + ++ EAL
Sbjct: 64 LDGEDIT--DVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEAL 121
Query: 1359 DKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTA 1418
+ L EG D K + S GQ+Q V L R L+ K+L+LDE +++D
Sbjct: 122 ELVGL-------EGFADRKPHQ----LSGGQQQRVALARALVPEPKVLLLDEPLSALDAK 170
Query: 1419 TDNLIQQSLR--QHFSDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLENKSS 1475
+++ L+ Q T + + H + SD + +++ G IE+ +P ++ E ++
Sbjct: 171 LREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERPAT 230
Query: 1476 SFSQLVAE 1483
F VA+
Sbjct: 231 RF---VAD 235
|
Length = 352 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 5e-15
Identities = 41/171 (23%), Positives = 71/171 (41%), Gaps = 16/171 (9%)
Query: 1264 VLRGISCTF-PGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLR 1322
+ G+S T GE + G G GK+TL++ L ++ P +G++ +G ++ R
Sbjct: 15 LFEGLSFTLNAGEA-LQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHR 73
Query: 1323 TRLSIIPQDPVMFEGTVRSNVD---PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVT 1379
L + + E + N+ + I +AL L +L
Sbjct: 74 NILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQL----- 128
Query: 1380 ENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQH 1430
S GQ++ + L R+ L R + +LDE T ++D A L+ LR H
Sbjct: 129 ------SAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAH 173
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 76.2 bits (188), Expect = 5e-15
Identities = 52/198 (26%), Positives = 88/198 (44%), Gaps = 38/198 (19%)
Query: 1264 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRT 1323
+L +S + P K T ++G G GKSTL++ R++ P +G + + IS++ L
Sbjct: 17 ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLAR 76
Query: 1324 RLSIIPQDPVMFEG-TVRSNVDPLEEY--------------TDEQIWE-ALDKCQLGDEV 1367
RL+++PQ + EG TVR L Y D A+++ ++
Sbjct: 77 RLALLPQHHLTPEGITVRE----LVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLA 132
Query: 1368 RKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATD----NLI 1423
D ++T+ S GQRQ L VL + +++LDE T +D L+
Sbjct: 133 -------DRRLTD----LSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLM 181
Query: 1424 QQSLRQHFSDCTVITIAH 1441
++ L TV+T+ H
Sbjct: 182 RE-LNTQGK--TVVTVLH 196
|
Length = 255 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 76.0 bits (187), Expect = 6e-15
Identities = 65/229 (28%), Positives = 105/229 (45%), Gaps = 39/229 (17%)
Query: 618 IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTL 677
IE + ++S S LKDI++K G + G G+GKS+L+ I + G++
Sbjct: 4 IEFKEVSYS---SFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSI 60
Query: 678 KLCGT--KAY-----------VAQSPWIQSGKIEDNILFG------KEMDRERYNAVLDA 718
+ G K V Q P + G ++DNI +G K +D E Y L
Sbjct: 61 LIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYY---LSI 117
Query: 719 CSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTG 778
L K+ + D NLSGG+ QR+ IAR L + ++ L D+P SA+D T
Sbjct: 118 VGLNKEY---ATRDVK-------NLSGGEAQRVSIARTLANNPEVLLLDEPTSALDP-TS 166
Query: 779 SHLFKEVLLGLLNSK--TVLYVTHQVEFLP-AADLVLVIKDGKITQAGK 824
+ + +E+++ L N TV+++TH +E D + G + + K
Sbjct: 167 TEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAK 215
|
Length = 241 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 6e-15
Identities = 57/221 (25%), Positives = 96/221 (43%), Gaps = 16/221 (7%)
Query: 1248 IDLRDLQVRYAPHMPFV--LRGIS-CTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAG 1304
I L R+ V + G+S PGE TG++G G+GK+T ++ L ++EP AG
Sbjct: 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEV-TGLLGPNGAGKTTTLRMLAGLLEPDAG 60
Query: 1305 QILIDGIDISLIGLHDLRTRLSIIPQDPVMFEG-TVRSNVDPLEEYTDEQIWEALDKCQL 1363
+DG D+ + R RL + +++ T R N LE + L +L
Sbjct: 61 FATVDGFDVVKEPA-EARRRLGFVSDSTGLYDRLTAREN---LEYFAG---LYGLKGDEL 113
Query: 1364 GDEVRKKEGKLDSKVTEN--GENWSMGQRQLVCLGRVLLKRRKILMLDEATASVD-TATD 1420
+ + +L + + +S G RQ V + R L+ +L+LDE T +D AT
Sbjct: 114 TARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATR 173
Query: 1421 NLIQQSLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGLI 1460
L + + ++ H + V D V++L G +
Sbjct: 174 ALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRV 214
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.6 bits (187), Expect = 6e-15
Identities = 48/177 (27%), Positives = 88/177 (49%), Gaps = 26/177 (14%)
Query: 1248 IDLRDLQVRYAP-HMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQI 1306
+++ +L Y LRG+S + ++GR G+GK+TL++T+ +V P +G+I
Sbjct: 4 LEVENLSAGYGKIQ---ALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRI 60
Query: 1307 LIDGIDISLIGLHDLRTRLSI--IPQDPVMF-EGTVRSN------VDPLEEYTDEQIWEA 1357
+ DG DI+ + H+ R RL I +P+ +F TV N +E + + E
Sbjct: 61 IFDGEDITGLPPHE-RARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEV 119
Query: 1358 LDKC-QLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATA 1413
+ +L + ++ G L S G++Q++ + R L+ R K+L+LDE +
Sbjct: 120 YELFPRLKERRNQRAGTL-----------SGGEQQMLAIARALMSRPKLLLLDEPSE 165
|
Length = 237 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 7e-15
Identities = 37/129 (28%), Positives = 52/129 (40%), Gaps = 27/129 (20%)
Query: 660 SSLLSCILGEVPKISGTLKLCGTK--------------AYVAQSPWI-QSGKIEDNILFG 704
S+LL I G + SGT+ L G V Q P + + +N+ FG
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 705 --KEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDAD 762
+ R L+ L L+ E LSGGQKQR+ IARAL +
Sbjct: 61 LRDKEADARAEEALERVGLPDFLDR----------EPVGTLSGGQKQRVAIARALLKKPK 110
Query: 763 IYLFDDPFS 771
+ L D+P +
Sbjct: 111 LLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 75.6 bits (186), Expect = 7e-15
Identities = 55/225 (24%), Positives = 107/225 (47%), Gaps = 24/225 (10%)
Query: 1264 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRT 1323
L ++ P ++G +GSGKSTL++ + + +P +G+I ++G D + + D
Sbjct: 15 ALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARD--R 72
Query: 1324 RLSIIPQDPVMFEG-TVRSNV-------DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLD 1375
++ + Q +F+ TVR N+ + ++ E L+ QL EG D
Sbjct: 73 KIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQL-------EGLGD 125
Query: 1376 SKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQ--HFSD 1433
+ S GQRQ V L R L ++L+LDE ++D ++ LR+
Sbjct: 126 RYPNQ----LSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVH 181
Query: 1434 CTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLENKSSSF 1477
T + + H ++ +D ++++S+G IE+ SP ++ ++ ++ F
Sbjct: 182 VTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDHPANPF 226
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 75.2 bits (185), Expect = 8e-15
Identities = 65/213 (30%), Positives = 103/213 (48%), Gaps = 31/213 (14%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT--------KAYVA 687
LK +NL + G +++ G G GKS+LL+ I G SG + L G + V
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVF 60
Query: 688 QS----PWIQSGKIEDNILFG-----KEMDRERYNAVLDACSLEKDLEILSFGDQTVVGE 738
Q+ PW+ + +NI ++ + A++ E+ + ++ G +
Sbjct: 61 QNYSLLPWLT---VRENIALAVDRVLPDLSKSERRAIV-----EEHIALV--GLTEAADK 110
Query: 739 RGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSK--TVL 796
R LSGG KQR+ IARAL + L D+PF A+DA T +L +E L+ + TVL
Sbjct: 111 RPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNL-QEELMQIWEEHRVTVL 169
Query: 797 YVTHQV-EFLPAADLVLVIKDGKITQAGKYTDV 828
VTH V E L +D V+++ +G G+ +V
Sbjct: 170 MVTHDVDEALLLSDRVVMLTNGPAANIGQILEV 202
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 77.6 bits (191), Expect = 9e-15
Identities = 57/229 (24%), Positives = 99/229 (43%), Gaps = 37/229 (16%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK------------ 683
+ D +L + G + G GSGKS+ + + + +G + + G
Sbjct: 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREV 68
Query: 684 -----AYVAQS-PWIQSGKIEDNILFGKEM----DRERYNAVLDACSLEKDLE--ILSFG 731
V Q I N G E+ ++ER L+ L LE +
Sbjct: 69 RRKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKL-VGLEEYEHRYP 127
Query: 732 DQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVL-LGLL 790
D+ LSGG +QR+ +ARAL + DI L D+ FSA+D + E+ L
Sbjct: 128 DE---------LSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQAT 178
Query: 791 NSKTVLYVTHQV-EFLPAADLVLVIKDGKITQAGKYTDVI-NSGTDFME 837
KT++++TH + E + D ++++K G+I Q G +++ N +++E
Sbjct: 179 LQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYVE 227
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 1e-14
Identities = 52/203 (25%), Positives = 96/203 (47%), Gaps = 35/203 (17%)
Query: 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1307
I++++L Y L+ ++ + I+G +G+GKSTL+++L +V+P +G+IL
Sbjct: 4 IEVKNLSKTYPGGHQ-ALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEIL 62
Query: 1308 IDGIDIS-LIG--LHDLRTRLSIIPQDP-----------VMF-----EGTVRS--NVDPL 1346
+G+ I+ L G L LR + +I Q V+ T RS +
Sbjct: 63 FNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSK 122
Query: 1347 EEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKIL 1406
E+ Q +AL++ + D+ ++ L S GQ+Q V + R L+++ KI+
Sbjct: 123 EDK--AQALDALERVGILDKAYQRASTL-----------SGGQQQRVAIARALVQQPKII 169
Query: 1407 MLDEATASVDTATDNLIQQSLRQ 1429
+ DE AS+D + + L+
Sbjct: 170 LADEPVASLDPESAKKVMDILKD 192
|
Length = 258 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.8 bits (186), Expect = 1e-14
Identities = 54/213 (25%), Positives = 111/213 (52%), Gaps = 23/213 (10%)
Query: 1278 TGIVGRTGSGKSTLIQTLFRIVE--PAA---GQILIDGIDI--SLIGLHDLRTRLSIIPQ 1330
T ++G +G GKST ++++ R+ + P+A G+IL +G++I S I + +LR + ++ Q
Sbjct: 50 TALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQ 109
Query: 1331 DPVMFEGTVRSNVDPLEEYT--------DEQIWEALDKCQLGDEVRKKEGKLDSKVTENG 1382
P F ++ +N+ +Y DE + E+L K L DEV+ ++ +
Sbjct: 110 KPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVK-------DRLHSSA 162
Query: 1383 ENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHR 1442
+ S GQ+Q +C+ R L + +L+LDE +++D ++ I++ + + + ++I + H
Sbjct: 163 LSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHN 222
Query: 1443 ITSVID-SDMVLLLSHGLIEEYDSPRKLLENKS 1474
+ + SD +G + EYD ++ +
Sbjct: 223 MQQALRVSDRTAFFLNGDLVEYDQTEQIFTSPK 255
|
Length = 268 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 74.0 bits (183), Expect = 2e-14
Identities = 58/225 (25%), Positives = 95/225 (42%), Gaps = 35/225 (15%)
Query: 1248 IDLRDLQVRYAPHMPF--VLRGISCTF-PGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAG 1304
+++R++ Y L IS + GE +VG +G GKSTL++ + + P +G
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEF-VALVGPSGCGKSTLLRIIAGLERPTSG 59
Query: 1305 QILIDGIDISLIGLHDLRTRLSIIPQDPVMFE-GTVRSNVD-PLE------EYTDEQIWE 1356
++L+DG ++ + Q + TV NV LE E+ E
Sbjct: 60 EVLVDGEPVT-----GPGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEE 114
Query: 1357 ALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVD 1416
L+ L +L S G RQ V L R L +L+LDE +++D
Sbjct: 115 LLELVGLSGFENAYPHQL-----------SGGMRQRVALARALAVDPDVLLLDEPFSALD 163
Query: 1417 TATDNLIQQSL----RQHFSDCTVITIAHRIT-SVIDSDMVLLLS 1456
T +Q+ L R+ TV+ + H I +V +D V++LS
Sbjct: 164 ALTREQLQEELLDIWRET--GKTVLLVTHDIDEAVFLADRVVVLS 206
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 75.6 bits (186), Expect = 2e-14
Identities = 69/241 (28%), Positives = 103/241 (42%), Gaps = 50/241 (20%)
Query: 653 GTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSP--------WIQS------GKIE 698
G G GK++LL + G SG++ L G V P QS +E
Sbjct: 3 GPSGCGKTTLLRLLAGFEQPDSGSIMLDGED--VTNVPPHLRHINMVFQSYALFPHMTVE 60
Query: 699 DNILFGKEMDR----ERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIA 754
+N+ FG +M + E VL+A L +++ F D+ + LSGGQ+QR+ +A
Sbjct: 61 ENVAFGLKMRKVPRAEIKPRVLEALRL---VQLEEFADR-----KPHQLSGGQQQRVALA 112
Query: 755 RALYQDADIYLFDDPFSAVDAHTGSHLFKEVL-----LGLLNSKTVLYVTH-QVEFLPAA 808
RAL I L D+P SA+D + E+ LG+ T ++VTH Q E + +
Sbjct: 113 RALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGI----TFVFVTHDQEEAMTMS 168
Query: 809 DLVLVIKDGKITQAGK----YTD--------VINSGTDFMELVDAHKQALSTLDSIEGRP 856
D + +++ GKI Q G Y + I F V K L +EGR
Sbjct: 169 DRIAIMRKGKIAQIGTPEEIYEEPANLFVARFIGEINVFEATVIERKSEQVVLAGVEGRR 228
Query: 857 L 857
Sbjct: 229 C 229
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 2e-14
Identities = 39/170 (22%), Positives = 72/170 (42%), Gaps = 20/170 (11%)
Query: 1252 DLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGI 1311
++ Y +L +S + + G+ G+GK+TL + L +++ ++G IL++G
Sbjct: 4 NISFSY-KKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGK 62
Query: 1312 DISLIGLHDLRTRLSIIPQDP--VMFEGTVRSNVDP-LEEYTD--EQIWEALDKCQLGDE 1366
I + R + + QD +F +VR + L+E EQ L L
Sbjct: 63 PIK---AKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYAL 119
Query: 1367 VRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVD 1416
+ L S GQ+Q + + LL + +L+ DE T+ +D
Sbjct: 120 KERHPLSL-----------SGGQKQRLAIAAALLSGKDLLIFDEPTSGLD 158
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 2e-14
Identities = 71/251 (28%), Positives = 113/251 (45%), Gaps = 43/251 (17%)
Query: 615 ETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKIS 674
E I + +F + ++ LKD++ V+ G VA+ G GSGKS+L + G + +
Sbjct: 3 EEIIRVEHISFRYPDAA-TYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEA 61
Query: 675 GTLKLCGTK-------------AYVAQSPWIQ--SGKIEDNILFGKE---MDR----ERY 712
GT+ + G V Q+P Q ++D++ FG E + R ER
Sbjct: 62 GTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERV 121
Query: 713 NAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSA 772
+ L +E F ++ LSGGQKQR+ IA L DI + D+ S
Sbjct: 122 DQALRQVGME------DFLNR-----EPHRLSGGQKQRVAIAGVLALQPDIIILDEATSM 170
Query: 773 VDAHTGSHLFKEVL--LGLLNSK---TVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTD 827
+D G +EVL + L + TVL +TH ++ AD V+V+ G+I + G +
Sbjct: 171 LDP-RGR---REVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEE 226
Query: 828 VINSGTDFMEL 838
+ SG E+
Sbjct: 227 IFKSGHMLQEI 237
|
Length = 279 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 74.8 bits (184), Expect = 2e-14
Identities = 60/193 (31%), Positives = 91/193 (47%), Gaps = 28/193 (14%)
Query: 635 TLKDINLKVFHGMRVAVCGTVGSGKSSLLSCI-----LGEVPKISGTLKLCGTKAY---- 685
L ++L + A+ G GSGKS+LL I L I+G++ G Y
Sbjct: 20 ALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRT 79
Query: 686 -----------VAQSPWIQSGKIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQT 734
V Q P I +N+++G + + VLD ++EK L+ S D+
Sbjct: 80 DTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDE-AVEKSLKGASIWDE- 137
Query: 735 VVGER----GINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL 790
V +R + LSGGQ+QR+ IAR L I L D+P SA+D + + +E LLGL
Sbjct: 138 -VKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKI-EETLLGLK 195
Query: 791 NSKTVLYVTHQVE 803
+ T+L VT ++
Sbjct: 196 DDYTMLLVTRSMQ 208
|
Length = 252 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 2e-14
Identities = 60/207 (28%), Positives = 97/207 (46%), Gaps = 42/207 (20%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKI-SGTLKLCGTK----------- 683
L D+NL + G A+ G GSGKS+LL+ I+G + K SG + L G +
Sbjct: 14 LDDLNLTIEKGKMYAIIGESGSGKSTLLN-IIGLLEKFDSGQVYLNGQETPPLNSKKASK 72
Query: 684 ------AYVAQS-PWIQSGKIEDNILFG--------KEMDRERYNAVLDACSLEKDLEIL 728
Y+ Q+ I++ +E+N+ G KE RE+ L+ L L+
Sbjct: 73 FRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEK-REKKKEALEKVGLNLKLK-- 129
Query: 729 SFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLG 788
+ E LSGG++QR+ +ARA+ + + L D+P ++D ++LL
Sbjct: 130 -----QKIYE----LSGGEQQRVALARAILKPPPLILADEPTGSLDPKN-RDEVLDLLLE 179
Query: 789 LLNS-KTVLYVTHQVEFLPAADLVLVI 814
L + KT++ VTH E AD V+ +
Sbjct: 180 LNDEGKTIIIVTHDPEVAKQADRVIEL 206
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 72.8 bits (180), Expect = 2e-14
Identities = 52/187 (27%), Positives = 95/187 (50%), Gaps = 23/187 (12%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSP--WIQ 693
++D++ +V G V + G VG+G++ L + G P SG + L G K +SP I+
Sbjct: 16 VRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDG-KPVTRRSPRDAIR 74
Query: 694 SGKIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQI 753
+G I + E DR+R VLD S+ +++ + S LSGG +Q++ +
Sbjct: 75 AG-----IAYVPE-DRKREGLVLDL-SVAENIALSSL------------LSGGNQQKVVL 115
Query: 754 ARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPA-ADLVL 812
AR L +D + + D+P VD + +++ + K VL ++ +++ L D +L
Sbjct: 116 ARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRIL 175
Query: 813 VIKDGKI 819
V+ +G+I
Sbjct: 176 VMYEGRI 182
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 2e-14
Identities = 61/194 (31%), Positives = 92/194 (47%), Gaps = 27/194 (13%)
Query: 633 NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCI-----LGEVPKISGTLKLCGTKAY-- 685
N LK INL + A+ G G GKS+LL C+ L E KI+G L + G Y
Sbjct: 16 NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGN 75
Query: 686 ------------VAQSPWIQSGKIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQ 733
V Q P I +N+ +G + VLD +E+ L + D+
Sbjct: 76 IDVADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEV-VERSLRGAALWDE 134
Query: 734 TVVGER----GINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL 789
V +R LSGGQ+QR+ IAR + + D+ L D+P SA+D +H +E++ L
Sbjct: 135 --VKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDP-IATHKIEELMEEL 191
Query: 790 LNSKTVLYVTHQVE 803
+ T++ VTH ++
Sbjct: 192 KKNYTIVIVTHSMQ 205
|
Length = 249 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 3e-14
Identities = 58/230 (25%), Positives = 103/230 (44%), Gaps = 29/230 (12%)
Query: 1264 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDG---IDISLIGLHD 1320
L IS + ++G +G+GKSTL++ + + P AG+I ++G D+S + + D
Sbjct: 17 ALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRD 76
Query: 1321 LRTRLSIIPQDPVMFEG-TVRSNV---------DPLEEYTDEQIWEALDKCQLGDEVRKK 1370
++ + Q +F TV N+ P E ++ E L QL +
Sbjct: 77 --RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRY 134
Query: 1371 EGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLR-- 1428
+L S GQRQ V L R L K+L+LDE ++D +++ LR
Sbjct: 135 PAQL-----------SGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKL 183
Query: 1429 QHFSDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLENKSSSF 1477
T + + H ++ +D V++L+ G IE+ P ++ ++ +S F
Sbjct: 184 HDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDHPASRF 233
|
Length = 345 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 74.2 bits (183), Expect = 3e-14
Identities = 62/226 (27%), Positives = 109/226 (48%), Gaps = 37/226 (16%)
Query: 1280 IVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDL----RTRLSIIPQDPVMF 1335
I+G +GSGKSTL++ + R++EP +G++LIDG DI+ + +L R ++S++ Q +
Sbjct: 55 IMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALL 114
Query: 1336 -EGTVRSNVD-PLE------EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSM 1387
TV NV LE +E+ EAL+ L K +L S
Sbjct: 115 PHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDEL-----------SG 163
Query: 1388 GQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDC------TVITIAH 1441
G +Q V L R L IL++DEA +A D LI++ ++ T++ I H
Sbjct: 164 GMQQRVGLARALAVDPDILLMDEAF----SALDPLIRREMQDELLRLQAELQKTIVFITH 219
Query: 1442 RITSVID-SDMVLLLSHGLIEEYDSPRKLLENKSSSFSQLVAEYTQ 1486
+ + D + ++ G + + +P ++L N ++ + V E+ +
Sbjct: 220 DLDEALRLGDRIAIMKDGRLVQVGTPEEILTNPANDY---VREFFR 262
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 74.0 bits (182), Expect = 3e-14
Identities = 58/189 (30%), Positives = 86/189 (45%), Gaps = 28/189 (14%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCI-----LGEVPKISGTLKLCGTKAY----- 685
LK INL + A+ G G GKS+ L + L KI G + L G Y
Sbjct: 19 LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78
Query: 686 ----------VAQSPWIQSGKIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQTV 735
V Q P I DN+ +G + LD +EK L+ + D+
Sbjct: 79 VNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEI-VEKSLKGAALWDE-- 135
Query: 736 VGER----GINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLN 791
V +R + LSGGQ+QR+ IARAL + ++ L D+P SA+D + + +E++ L
Sbjct: 136 VKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKI-EELIQELKK 194
Query: 792 SKTVLYVTH 800
T++ VTH
Sbjct: 195 DYTIVIVTH 203
|
Length = 250 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 74.4 bits (182), Expect = 3e-14
Identities = 67/257 (26%), Positives = 115/257 (44%), Gaps = 41/257 (15%)
Query: 1264 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAG-----QILIDGIDI-SLIG 1317
VL +S FP T ++G TGSGK+T ++TL R+ + +G +L+ G I +
Sbjct: 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95
Query: 1318 LHDLRTRLSIIPQDPVMFEGTVRSNV---------DPLEEY--------TDEQIWEALDK 1360
+ + R R+ ++ Q P F ++ NV P +E+ T+ +W+A+ K
Sbjct: 96 VLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAV-K 154
Query: 1361 CQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATD 1420
+L D + G GQ+QL+CL R L ++L+LDE T+++D T
Sbjct: 155 DRLSDSPFRLSG---------------GQQQLLCLARTLAVNPEVLLLDEPTSALDPTTT 199
Query: 1421 NLIQQSLRQHFSDCTVITIAHRITSV--IDSDMVLLLSHGLIEEYDSPRKLLENKSSSFS 1478
I++ +R TVI + H + I L L+EE + + K + +
Sbjct: 200 EKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSSPKHAETA 259
Query: 1479 QLVAEYTQRSSSSLAGN 1495
+ VA + + GN
Sbjct: 260 RYVAGLSGDVKDAKRGN 276
|
Length = 276 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.7 bits (181), Expect = 4e-14
Identities = 59/237 (24%), Positives = 116/237 (48%), Gaps = 32/237 (13%)
Query: 1264 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVE-----PAAGQILIDGIDISLIGL 1318
+L I+ + T +G +G GKST ++ R+ + G++ IDGID+ +
Sbjct: 20 ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDT 79
Query: 1319 HD--LRTRLSIIPQDPVMFEGTVRSNV--DPL-------EEYTDEQIWEALDKCQLGDEV 1367
+ LR ++ ++ Q P F ++ NV P ++ DE + ++L L +E
Sbjct: 80 NVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEE- 138
Query: 1368 RKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVD----TATDNLI 1423
L ++ ++ S GQ+Q +C+ R + + +L++DE +++D +NLI
Sbjct: 139 ------LGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLI 192
Query: 1424 QQSLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLENKSSSFSQ 1479
Q+ L+++F T+I + H + SD V G I EY++ +++ +N SS ++
Sbjct: 193 QE-LKKNF---TIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFKNPQSSKTK 245
|
Length = 251 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 74.3 bits (182), Expect = 4e-14
Identities = 64/228 (28%), Positives = 105/228 (46%), Gaps = 30/228 (13%)
Query: 624 NFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSL---LSCIL------------- 667
N S+ P L++INL + G + + G GSGKS+L L+ +L
Sbjct: 6 NVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGID 65
Query: 668 -GEVPKISGTLKLCGTKAYVAQSPWIQ--SGKIEDNILFGKEMDRERYNAVLDACSLEK- 723
G+ K+ G KL G V Q+P Q +E+++ FG E N L + K
Sbjct: 66 TGDFSKLQGIRKLVGI---VFQNPETQFVGRTVEEDLAFGPE------NLCLPPIEIRKR 116
Query: 724 -DLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLF 782
D + G + LSGGQ Q + +A L + + +FD+ S +D +G +
Sbjct: 117 VDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVL 176
Query: 783 KEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVIN 830
+ + KT++Y+TH +E L AD ++V+ GKI G+ +V++
Sbjct: 177 ERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLS 224
|
Length = 274 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 5e-14
Identities = 59/235 (25%), Positives = 104/235 (44%), Gaps = 31/235 (13%)
Query: 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1307
I ++ Y P LR +S P + + G +G+GKSTL++ ++ P G+IL
Sbjct: 2 IRFENVSKAY-PGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKIL 60
Query: 1308 IDGIDISLIGLHD---LRTRLSIIPQD-PVMFEGTVRSNVD-PLE-------EYTDEQIW 1355
++G D+S + + LR ++ ++ QD ++ + TV NV PL E ++
Sbjct: 61 VNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREI-RRRVS 119
Query: 1356 EALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASV 1415
E LD L + R +L S G++Q V + R ++ + +L+ DE T ++
Sbjct: 120 EVLDLVGLKHKARALPSQL-----------SGGEQQRVAIARAIVNQPAVLLADEPTGNL 168
Query: 1416 DTATDNLIQQSL-RQHFSDCTVITIAHRITSVIDSDM---VLLLSHGLIEEYDSP 1466
D I + + TV+ H + V + M VL L G + +S
Sbjct: 169 DPDLSWEIMRLFEEINRLGTTVLMATHDLELV--NRMRHRVLALEDGRLVRDESR 221
|
Length = 223 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 76.0 bits (188), Expect = 6e-14
Identities = 55/214 (25%), Positives = 98/214 (45%), Gaps = 43/214 (20%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPW--IQ 693
D++L V G A+ G G+GKS+L+ + G SG +++ G + + SP I+
Sbjct: 20 NDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIK-SPRDAIR 78
Query: 694 SG--------------KIEDNILFGKEMD----------RERYNAVLDACSLEKDLEILS 729
G + +NI+ G E R R + + L D +
Sbjct: 79 LGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPD--- 135
Query: 730 FGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL 789
V + LS G++QR++I +ALY+ A + + D+P + + LF +L
Sbjct: 136 ----AKVAD----LSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELF--EILRR 185
Query: 790 LNS--KTVLYVTHQV-EFLPAADLVLVIKDGKIT 820
L + KT++++TH++ E + AD V V++ GK+
Sbjct: 186 LAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVV 219
|
Length = 501 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 7e-14
Identities = 64/212 (30%), Positives = 96/212 (45%), Gaps = 32/212 (15%)
Query: 613 SSETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCI-----L 667
AIE+ D N + H LKDINL + A+ G G GKS+LL C+ L
Sbjct: 3 MKIPAIEVRDLNLYYG-DKH--ALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDL 59
Query: 668 GEVPKISGTLKLCGTKAY---------------VAQSPWIQSGKIEDNILFGKEMDRERY 712
++ G + L G Y V Q P I DN+ +G + +
Sbjct: 60 IPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIK- 118
Query: 713 NAVLDACSLEKDLEILSFGDQTVVGER----GINLSGGQKQRIQIARALYQDADIYLFDD 768
+ LD +E L+ + D+ V +R + LSGGQ+QR+ IARAL ++ L D+
Sbjct: 119 DKELDE-IVESSLKKAALWDE--VKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDE 175
Query: 769 PFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTH 800
P SA+D + +E++ L T++ VTH
Sbjct: 176 PTSALDP-ISTLKIEELITELKKKYTIVIVTH 206
|
Length = 253 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.7 bits (181), Expect = 7e-14
Identities = 62/223 (27%), Positives = 101/223 (45%), Gaps = 29/223 (13%)
Query: 603 PDLVEKQPRGSSETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSL 662
D S ET IE D N + L D+++ + A+ G G GKS+
Sbjct: 25 TDPSGDPAASSGETVIEARDLNVFYG---DEQALDDVSMDIPENQVTAMIGPSGCGKSTF 81
Query: 663 LSCI-----LGEVPKISGTLKLCGTKAY---------------VAQSPWIQSGKIEDNIL 702
L CI L + ++ G L G Y V Q P I DN+
Sbjct: 82 LRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPKSIYDNVA 141
Query: 703 FGKEMDRERYNAVLDACSLEKDLEILSFGDQT--VVGERGINLSGGQKQRIQIARALYQD 760
+G ++ + Y+ +D +E+ L + D+ + G++LSGGQ+QR+ IARA+ D
Sbjct: 142 YGLKI--QGYDGDIDE-RVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPD 198
Query: 761 ADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVE 803
++ L D+P SA+D S + ++++ L TV+ VTH ++
Sbjct: 199 PEVILMDEPASALDPVATSKI-EDLIEELAEEYTVVIVTHNMQ 240
|
Length = 285 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 8e-14
Identities = 62/211 (29%), Positives = 93/211 (44%), Gaps = 36/211 (17%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILG-EVPKISGTLKLCG-----TKAY---- 685
L ++L + G + G G GK++LL I G E P SG + L G +
Sbjct: 16 LDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT-SGEILLDGKDITNLPPHKRPV 74
Query: 686 --VAQS----PWIQSGKIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGER 739
V Q+ P + + +NI FG + + + E+ E L R
Sbjct: 75 NTVFQNYALFPHLT---VFENIAFGLRLKKLPKAEIK-----ERVAEALDLVQLEGYANR 126
Query: 740 GIN-LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVL-----LGLLNSK 793
+ LSGGQ+QR+ IARAL + + L D+P A+D + E+ LG+
Sbjct: 127 KPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGI---- 182
Query: 794 TVLYVTH-QVEFLPAADLVLVIKDGKITQAG 823
T ++VTH Q E L +D + V+ GKI Q G
Sbjct: 183 TFVFVTHDQEEALTMSDRIAVMNKGKIQQIG 213
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.0 bits (179), Expect = 8e-14
Identities = 59/216 (27%), Positives = 106/216 (49%), Gaps = 29/216 (13%)
Query: 1278 TGIVGRTGSGKSTLIQTLFRIVE--PA---AGQILIDGIDI--SLIGLHDLRTRLSIIPQ 1330
T I+G +G GKST I+TL R+VE P+ G+IL +I + +LRT + ++ Q
Sbjct: 53 TAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQ 112
Query: 1331 DPVMFEGTVRSNV--DPL------EEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENG 1382
P F ++ NV P ++ DE + ++L + DE++ ++ +N
Sbjct: 113 KPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELK-------DRLHDNA 165
Query: 1383 ENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQ---QSLRQHFSDCTVITI 1439
S GQ+Q +C+ R L ++++DE T+++D + ++ Q L++ +S +I +
Sbjct: 166 YGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYS---IIIV 222
Query: 1440 AHRITSVID-SDMVLLLSHGLIEEYDSPRKLLENKS 1474
H + SD +G + EYD K+ N S
Sbjct: 223 THNMQQAARISDKTAFFLNGYVNEYDDTDKIFSNPS 258
|
Length = 271 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 74.4 bits (183), Expect = 9e-14
Identities = 60/247 (24%), Positives = 111/247 (44%), Gaps = 42/247 (17%)
Query: 1268 ISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDI----SLIGLHDLRT 1323
T PG+ T I GR+GSGK+TLI+ + + P G+I+++G + I L +
Sbjct: 16 ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKR 75
Query: 1324 RLSIIPQDPVMFEG-TVRSNVD--------PLEEYTDEQIWEALDKCQLGDEVRKKEGKL 1374
R+ + Q+ +F +VR N+ + E++ E L +G + + G+L
Sbjct: 76 RIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLG---IGHLLGRLPGRL 132
Query: 1375 DSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQ---QSLRQHF 1431
S G++Q V +GR LL ++L++DE A++D I + L F
Sbjct: 133 -----------SGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEF 181
Query: 1432 SDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLL----------ENKSSSFSQL 1480
++ ++H + V+ +D V++L G + ++ E++ S +
Sbjct: 182 -GIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDLPWLAREDQGSLIEGV 240
Query: 1481 VAEYTQR 1487
VAE+ Q
Sbjct: 241 VAEHDQH 247
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 1e-13
Identities = 59/211 (27%), Positives = 100/211 (47%), Gaps = 22/211 (10%)
Query: 1280 IVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDL----RTRLSIIPQDPVMF 1335
I+G +GSGKST ++ L R++EP AGQI IDG +I +L R ++ ++ Q +F
Sbjct: 24 IMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALF 83
Query: 1336 -EGTVRSNVDPLEEYTDE-QIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLV 1393
T+ N E W ++ + E+ K G L+ + S G +Q V
Sbjct: 84 PHMTILQNT----SLGPELLGWPEQERKEKALELLKLVG-LEEYEHRYPDELSGGMQQRV 138
Query: 1394 CLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDC------TVITIAHRITSVI 1447
L R L IL++DEA + A D LI+ S++ T++ I H + I
Sbjct: 139 GLARALAAEPDILLMDEAFS----ALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAI 194
Query: 1448 D-SDMVLLLSHGLIEEYDSPRKLLENKSSSF 1477
D ++++ G I + +P ++L N ++ +
Sbjct: 195 RIGDRIVIMKAGEIVQVGTPDEILRNPANEY 225
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 1e-13
Identities = 58/213 (27%), Positives = 109/213 (51%), Gaps = 28/213 (13%)
Query: 1246 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFR---IVEPA 1302
GKI ++DL + Y L+ I+ + T ++G +G GKST ++TL R ++
Sbjct: 2 GKISVKDLDLFYGDFQ--ALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSV 59
Query: 1303 --AGQILIDGIDI--SLIGLHDLRTRLSIIPQDPVMFEGTVRSNV----------DPLEE 1348
G++L+DG DI S I ++ LR R+ ++ Q P F ++ NV D +
Sbjct: 60 KIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKK- 118
Query: 1349 YTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILML 1408
DE + ++L L DEV+ ++ ++ S GQ+Q +C+ R L ++L++
Sbjct: 119 -LDEIVEKSLKGAALWDEVK-------DRLKKSALGLSGGQQQRLCIARALAVEPEVLLM 170
Query: 1409 DEATASVDTATDNLIQQSLRQHFSDCTVITIAH 1441
DE T+++D + I++ +++ D T++ + H
Sbjct: 171 DEPTSALDPISTLKIEELIQELKKDYTIVIVTH 203
|
Length = 250 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.0 bits (179), Expect = 1e-13
Identities = 63/215 (29%), Positives = 98/215 (45%), Gaps = 41/215 (19%)
Query: 614 SETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKI 673
+ I + D +W + + L+D + V G A+ G GSGKS+L ++G V
Sbjct: 3 QQAGIVVNDVTVTW--RNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLA 60
Query: 674 SGTLKLCGTK----------AYVAQSP---WIQSGKIEDNILFG-----------KEMDR 709
SG + + G AYV QS W +ED ++ G K+ DR
Sbjct: 61 SGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDR 120
Query: 710 ERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDP 769
+ A L ++++ F + + GE LSGGQK+R+ +ARA+ Q + L D+P
Sbjct: 121 QIVTAAL------ARVDMVEFRHRQI-GE----LSGGQKKRVFLARAIAQQGQVILLDEP 169
Query: 770 FSAVDAHTGSHLFKEVLLGLLNS--KTVLYVTHQV 802
F+ VD T + + LL L KT+L TH +
Sbjct: 170 FTGVDVKTEARIIS--LLRELRDEGKTMLVSTHNL 202
|
Length = 272 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 72.2 bits (178), Expect = 1e-13
Identities = 52/202 (25%), Positives = 89/202 (44%), Gaps = 38/202 (18%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSG 695
+ ++ + G + + G G GKS+L ILG SG + G
Sbjct: 29 VDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEG-------------- 74
Query: 696 KIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIAR 755
+D KE RER +L+ L ++ + + + LSGGQ+QRI IAR
Sbjct: 75 --KDITKLSKEERRERVLELLEKVGLPEEF-LYRYPHE---------LSGGQRQRIGIAR 122
Query: 756 ALYQDADIYLFDDPFSAVDAHTGS---HLFKEVLLGLLNSK---TVLYVTHQVEFLPA-A 808
AL + + + D+P SA+D + +L K+ L + T L+++H + + +
Sbjct: 123 ALALNPKLIVADEPVSALDVSVQAQILNLLKD-----LQEELGLTYLFISHDLSVVRYIS 177
Query: 809 DLVLVIKDGKITQAGKYTDVIN 830
D + V+ GKI + G +V +
Sbjct: 178 DRIAVMYLGKIVEIGPTEEVFS 199
|
Length = 268 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 70.3 bits (173), Expect = 2e-13
Identities = 48/178 (26%), Positives = 82/178 (46%), Gaps = 23/178 (12%)
Query: 1264 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHD--- 1320
+L ++ T K I+G +GSGKSTL+ + + + +GQ+ ++G + +
Sbjct: 13 ILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKKASK 72
Query: 1321 -LRTRLSIIPQDPVMFEG-TVRSNVDPLEEYT-------DEQIWEALDKCQLGDEVRKKE 1371
R +L + Q+ + E TV N+D +Y E+ EAL+K L
Sbjct: 73 FRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGL-------N 125
Query: 1372 GKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQ 1429
KL K+ E S G++Q V L R +LK +++ DE T S+D + + L +
Sbjct: 126 LKLKQKIYE----LSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLE 179
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.9 bits (176), Expect = 2e-13
Identities = 61/228 (26%), Positives = 106/228 (46%), Gaps = 28/228 (12%)
Query: 1265 LRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVE--PAA---GQILIDGIDISLIGLH 1319
L+GI F + T ++G +G GKST ++TL R+ + P G + + G +I
Sbjct: 21 LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80
Query: 1320 --DLRTRLSIIPQDPVMFEGTVRSNV----------DPLEEYTDEQIWEALDKCQLGDEV 1367
LR ++ ++ Q P F ++ NV D + DE + +L + + DEV
Sbjct: 81 VVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKD--KAVLDEAVETSLKQAAIWDEV 138
Query: 1368 RKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSL 1427
+ + E+ + S GQ+Q VC+ RVL + +++LDE T+++D + I+ L
Sbjct: 139 K-------DHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENML 191
Query: 1428 RQHFSDCTVITIAHRI--TSVIDSDMVLLLSHGLIEEYDSPRKLLENK 1473
+ T+I + H + S I L+ LIE D+ + L K
Sbjct: 192 LELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMFLNPK 239
|
Length = 252 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.0 bits (176), Expect = 2e-13
Identities = 59/242 (24%), Positives = 114/242 (47%), Gaps = 28/242 (11%)
Query: 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRI--VEPAA- 1303
K+ L L V + + ++ +S FP T I+G +G GKST+++++ R+ + P+A
Sbjct: 4 KVKLEQLNVHFGKN--HAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSAR 61
Query: 1304 --GQILIDGIDISLIGLH--DLRTRLSIIPQDPVMFEG-TVRSNVD---------PLEEY 1349
G+IL+D DI G+ +R R+ ++ Q P F ++ NV E
Sbjct: 62 VTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSE- 120
Query: 1350 TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLD 1409
DE + +L + L DEV+ ++ N S GQ+Q +C+ R + + +++++D
Sbjct: 121 ADEIVESSLKRVALWDEVK-------DRLKSNAMELSGGQQQRLCIARTIAVKPEVILMD 173
Query: 1410 EATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRK 1468
E +++D + I++ + + T+I + H + SD G + E +K
Sbjct: 174 EPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKK 233
Query: 1469 LL 1470
+
Sbjct: 234 IF 235
|
Length = 252 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 71.7 bits (176), Expect = 2e-13
Identities = 71/222 (31%), Positives = 106/222 (47%), Gaps = 48/222 (21%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCI-LGEVPKISGTLKLCGTKAYVAQSPWIQS 694
L I+L+V G VA+ G GSGK++LL CI L E P+ +GT+++ A+S Q
Sbjct: 19 LHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPE-AGTIRVGDITIDTARSLSQQK 77
Query: 695 GKIE----------------------DNILFG----KEMDRERYNAVLDACSLEKDL--E 726
G I +NI+ G K +E +A + ++L +
Sbjct: 78 GLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKE------EATARARELLAK 131
Query: 727 ILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVL 786
+ G +T R LSGGQ+QR+ IARAL ++ LFD+P SA+D L EVL
Sbjct: 132 VGLAGKETSYPRR---LSGGQQQRVAIARALAMRPEVILFDEPTSALD----PELVGEVL 184
Query: 787 ---LGLLNSK-TVLYVTHQVEFL-PAADLVLVIKDGKITQAG 823
L K T++ VTH++ F AD + + G+I + G
Sbjct: 185 NTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQG 226
|
Length = 250 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.6 bits (175), Expect = 2e-13
Identities = 59/232 (25%), Positives = 114/232 (49%), Gaps = 23/232 (9%)
Query: 1264 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVE------PAAGQILIDGIDISLIG 1317
+L+ I+ P GI+G +GSGKSTL++ L R++E G++L G DI I
Sbjct: 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID 84
Query: 1318 LHDLRTRLSIIPQDPVMFEG-TVRSNVD-PLEEYTDEQ-------IWEALDKCQLGDEVR 1368
LR + ++ Q P F ++ N+ PL+ + ++ + E L K L EV
Sbjct: 85 AIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVY 144
Query: 1369 KKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLR 1428
+L+S ++ S GQ+Q + + R L + K+L++DE T+ +D I++ +
Sbjct: 145 D---RLNSPASQ----LSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLIT 197
Query: 1429 QHFSDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLENKSSSFSQ 1479
+ ++ ++ ++H V +D V L +G + E+ S ++ + + ++
Sbjct: 198 ELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTSPKNELTE 249
|
Length = 257 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.2 bits (174), Expect = 2e-13
Identities = 51/210 (24%), Positives = 104/210 (49%), Gaps = 20/210 (9%)
Query: 1276 KKTGIVGRTGSGKSTLIQTLFRIVEPAA---GQILIDGIDISLIGLHDLRTRLSIIPQDP 1332
K T ++G +G GKST ++ R+ + A G + I+G D+ + LR + ++ Q P
Sbjct: 29 KITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQP 88
Query: 1333 VMFEGTVRSNVD-------PLEEYTDEQ--IWEALDKCQLGDEVRKKEGKLDSKVTENGE 1383
+F ++ N+ ++ +E+ + + L K L +EV+ K+ +N
Sbjct: 89 NVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVK-------DKLKQNAL 141
Query: 1384 NWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRI 1443
S GQ+Q +C+ R L + K+L+LDE T+++D + +I++ L++ + ++I + H +
Sbjct: 142 ALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNM 201
Query: 1444 TSVID-SDMVLLLSHGLIEEYDSPRKLLEN 1472
+D G + E+ ++ EN
Sbjct: 202 QQGKRVADYTAFFHLGELIEFGESKEFFEN 231
|
Length = 246 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.0 bits (174), Expect = 3e-13
Identities = 67/248 (27%), Positives = 103/248 (41%), Gaps = 52/248 (20%)
Query: 617 AIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCI-----LGEVP 671
AIE + + N +K ++LK+ A+ G G GKS+LL L E
Sbjct: 4 AIETVNLRVYY---GSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEA 60
Query: 672 KISGTLKLCGTKAYVAQSPWIQSGK----------------IEDNILFG----------K 705
++ G ++L G Y I+ + I DN+ G K
Sbjct: 61 RVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKK 120
Query: 706 EMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYL 765
E+D ER L +L ++ + + + NLSGGQ+QR+ IARAL I L
Sbjct: 121 ELD-ERVEWALKKAALWDEV-------KDRLNDYPSNLSGGQRQRLVIARALAMKPKILL 172
Query: 766 FDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPA-----ADLVLVIKDGKIT 820
D+P + +D G+ +E+L L T++ VTH PA +D V + GK+
Sbjct: 173 MDEPTANIDP-VGTAKIEELLFELKKEYTIVLVTHS----PAQAARVSDYVAFLYLGKLI 227
Query: 821 QAGKYTDV 828
+ G V
Sbjct: 228 EVGPTRKV 235
|
Length = 253 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 3e-13
Identities = 66/234 (28%), Positives = 108/234 (46%), Gaps = 49/234 (20%)
Query: 618 IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILG-EVPKISGT 676
+E+ + S+D + +++L + +G + + G G GK+++L I G E P SG
Sbjct: 15 VELRGISKSFD---GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD-SGR 70
Query: 677 LKLCGTKAYVAQSP--------WIQS------GKIEDNILFGKEMD-------RERYNAV 715
+ L G + P QS + +N+ FG M R V
Sbjct: 71 IMLDGQD--ITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPR---V 125
Query: 716 LDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDA 775
++A + + LE F + + LSGGQ+QR+ IARA+ + L D+ SA+D
Sbjct: 126 MEALRMVQ-LE--EFAQR-----KPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDY 177
Query: 776 HTGSHLFKEVLLGL--LNSK---TVLYVTH-QVEFLPAADLVLVIKDGKITQAG 823
L K++ L L K T ++VTH Q E L +D ++V++DG+I Q G
Sbjct: 178 ----KLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDG 227
|
Length = 375 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 3e-13
Identities = 60/245 (24%), Positives = 106/245 (43%), Gaps = 39/245 (15%)
Query: 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1307
I +L A +L G+S + I+G G+GKSTL++ L + P +G++
Sbjct: 2 IRAENLSYSLAGRR--LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVT 59
Query: 1308 IDGIDISLIGLHDLRTRLSIIPQDPVM-FEGTVRSNV--------DPLEEYTDEQIWE-A 1357
++G+ ++ +L +++PQ+ + F TV+ V E DE+I A
Sbjct: 60 LNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQA 119
Query: 1358 LDKCQL----GDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLK------RRKILM 1407
L L G + R G G++Q V L RVL + + L
Sbjct: 120 LAATDLSGLAGRDYRTLSG---------------GEQQRVQLARVLAQLWPPVPSGRWLF 164
Query: 1408 LDEATASVDTATDNLIQQSLRQHFSD-CTVITIAHRIT-SVIDSDMVLLLSHGLIEEYDS 1465
LDE T+++D A + + RQ + V+ + H + + +D ++LL G + S
Sbjct: 165 LDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGS 224
Query: 1466 PRKLL 1470
P+ +L
Sbjct: 225 PQDVL 229
|
Length = 259 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 72.6 bits (178), Expect = 3e-13
Identities = 65/229 (28%), Positives = 114/229 (49%), Gaps = 25/229 (10%)
Query: 1265 LRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDL--- 1321
L +S P + G++G +G+GKSTLI+ + + P +G +++DG D++ + +L
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80
Query: 1322 RTRLSIIPQD-PVMFEGTVRSNVD-PLE------EYTDEQIWEALDKCQLGDEVRKKEGK 1373
R ++ +I Q ++ TV NV PLE + ++ E L LGD K
Sbjct: 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGD-------K 133
Query: 1374 LDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQ--HF 1431
DS + N S GQ+Q V + R L K+L+ DEAT+++D AT I + L++
Sbjct: 134 HDSYPS----NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRR 189
Query: 1432 SDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLENKSSSFSQ 1479
T++ I H + V D V ++S+G + E + ++ + + +Q
Sbjct: 190 LGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSHPKTPLAQ 238
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 73.0 bits (179), Expect = 3e-13
Identities = 53/181 (29%), Positives = 82/181 (45%), Gaps = 25/181 (13%)
Query: 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1307
ID+ DL V + VL G+ + G+VG G+GK+TL++ + + P AG +L
Sbjct: 4 IDVSDLSVEFGDTT--VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVL 61
Query: 1308 IDGIDISLIGLHDLRTRLSIIPQD-PVMFEGTVRSNV-----------DPLEEYTDEQIW 1355
+ G D+ + R++ +PQD + FE VR V D E +
Sbjct: 62 VAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVE 121
Query: 1356 EALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASV 1415
A+++ + D VT S G+RQ V L R L + +L+LDE TAS+
Sbjct: 122 RAMERTGVAQFA-------DRPVTS----LSGGERQRVLLARALAQATPVLLLDEPTASL 170
Query: 1416 D 1416
D
Sbjct: 171 D 171
|
Length = 402 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.0 bits (174), Expect = 3e-13
Identities = 58/245 (23%), Positives = 116/245 (47%), Gaps = 33/245 (13%)
Query: 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVE-----PA 1302
+ ++L + Y L I+ + P + T ++G +G GKSTL++ R+ +
Sbjct: 7 LSTKNLNLWYGEKH--ALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRI 64
Query: 1303 AGQILIDGIDISLIGLH--DLRTRLSIIPQDPVMFEGTVRSNV--------DPLEEYTDE 1352
G IL +G +I G LR ++ ++ Q P F ++ NV + ++ D
Sbjct: 65 TGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDT 124
Query: 1353 QIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEAT 1412
+ ++L L DEV+ ++ ++ + S GQ+Q +C+ R L +++++DE
Sbjct: 125 IVEKSLKGAALWDEVK-------DRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPC 177
Query: 1413 ASVD-TAT---DNLIQQSLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPR 1467
+++D AT ++LI+ +++ TVI + H + SD + G + E+D
Sbjct: 178 SALDPIATAKIEDLIEDLKKEY----TVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTT 233
Query: 1468 KLLEN 1472
++ EN
Sbjct: 234 QIFEN 238
|
Length = 253 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 71.0 bits (174), Expect = 3e-13
Identities = 65/221 (29%), Positives = 97/221 (43%), Gaps = 32/221 (14%)
Query: 1268 ISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTR--- 1324
+S T + I+G GSGKSTL + L ++EP +G+ILI+ + D R
Sbjct: 32 VSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILIND---HPLHFGDYSFRSKR 88
Query: 1325 LSIIPQDP-----------VMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGK 1373
+ +I QDP + + +R N D E +QI+E L + G
Sbjct: 89 IRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETL----------RMVGL 138
Query: 1374 LDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTAT-DNLIQQSLR-QHF 1431
L + GQ+Q V L R L+ R KI++ DEA AS+D + LI L Q
Sbjct: 139 LPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEK 198
Query: 1432 SDCTVITIAHRITSVID--SDMVLLLSHGLIEEYDSPRKLL 1470
+ I + I +I SD VL++ G + E S +L
Sbjct: 199 QGISYIYVTQHI-GMIKHISDQVLVMHEGEVVERGSTADVL 238
|
Length = 267 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 73.4 bits (181), Expect = 4e-13
Identities = 49/204 (24%), Positives = 85/204 (41%), Gaps = 43/204 (21%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK--AYVAQSP--- 690
L++++L + G R+ + G G+GKS+LL + GE+ SG + Y++Q P
Sbjct: 19 LENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLD 78
Query: 691 ------------------------WIQSGKIEDNILFGKEMDRERYNAVLDACSLEKDLE 726
+ + + E++ LD +LE E
Sbjct: 79 PEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALL--EELDGWTLEARAE 136
Query: 727 I----LSF-GDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHL 781
L F + V LSGG ++R+ +ARAL ++ D+ L D+P + +D + L
Sbjct: 137 EALLGLGFPDEDRPVSS----LSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWL 192
Query: 782 FKEVLLGLLNSKTVLYVTHQVEFL 805
++ L TV+ V+H FL
Sbjct: 193 -EDYLKRY--PGTVIVVSHDRYFL 213
|
Length = 530 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 73.4 bits (181), Expect = 4e-13
Identities = 64/270 (23%), Positives = 107/270 (39%), Gaps = 47/270 (17%)
Query: 585 TKVSLQRIASFFCLDELQPDLVEKQPRGSSETA---------------IEIADGNFSWDI 629
K + RI L++L+ L E++P + +E + + +D
Sbjct: 277 AKKAKSRIK---RLEKLEARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYD- 332
Query: 630 SSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK---AYV 686
LKD++ ++ G R+A+ G G+GKS+LL + GE+ +SGT+K G Y
Sbjct: 333 -GGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVK-VGETVKIGYF 390
Query: 687 AQSPWIQSGKIEDNILF---GKEMDRERYNAVLDACSLEKDLEILSFG-DQTVVGERGIN 742
Q + D + + V FG +
Sbjct: 391 DQH---RDELDPDKTVLEELSEGFPDGDEQEVRAYLG--------RFGFTGEDQEKPVGV 439
Query: 743 LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNS--KTVLYVTH 800
LSGG+K R+ +A+ L Q ++ L D+P + +D + E L L TVL V+H
Sbjct: 440 LSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIES-----LEALEEALLDFEGTVLLVSH 494
Query: 801 QVEFLPA-ADLVLVIKDGKITQAGKYTDVI 829
FL A + +++D G Y D +
Sbjct: 495 DRYFLDRVATRIWLVEDKVEEFEGGYEDYL 524
|
Length = 530 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 71.8 bits (176), Expect = 4e-13
Identities = 72/256 (28%), Positives = 113/256 (44%), Gaps = 46/256 (17%)
Query: 638 DINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG----TKAYVAQS---- 689
++ V G + G G+GK++ L +LG +G++ LCG ++A A+
Sbjct: 25 GLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGV 84
Query: 690 -PWIQS-----GKIEDNILFGKEMD------RERYNAVLDACSLEKDLEILSFGDQTVVG 737
P + E+ ++FG+ R +L+ LE + VG
Sbjct: 85 VPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKAD-------AKVG 137
Query: 738 ERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNS-KTVL 796
E LSGG K+R+ +ARAL D D+ + D+P + +D HL E L LL KT+L
Sbjct: 138 E----LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQ-ARHLMWERLRSLLARGKTIL 192
Query: 797 YVTHQVEFLPAA----DLVLVIKDGKITQAGKYTDVINS--GTDFMELVDAHKQALSTLD 850
TH F+ A D + VI++G+ G +I S G D +E+ AL
Sbjct: 193 LTTH---FMEEAERLCDRLCVIEEGRKIAEGAPHALIESEIGCDVIEIYGPDPVALRD-- 247
Query: 851 SIEGRPLSEKGSANGE 866
E PL+E+ +GE
Sbjct: 248 --ELAPLAERTEISGE 261
|
Length = 306 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.8 bits (177), Expect = 4e-13
Identities = 60/254 (23%), Positives = 108/254 (42%), Gaps = 40/254 (15%)
Query: 1248 IDLRDLQVRY-APHMPF-VLRGISCTFPGEKKT-GIVGRTGSGKSTLIQTLFRIVEPA-- 1302
+++++L V + + G+S + + GIVG +GSGKS L + + ++
Sbjct: 2 LEVKNLSVSFPTDAGVVKAVDGVSFEL-KKGEILGIVGESGSGKSVLAKAIMGLLPKPNA 60
Query: 1303 ---AGQILIDGIDISLIG---LHDLR-TRLSIIPQDPVMFEGTVRSNVDPLEEYT-DEQI 1354
G+IL DG D+ + L +R +++I QDP ++++P+ T +QI
Sbjct: 61 RIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDP-------MTSLNPV--MTIGDQI 111
Query: 1355 WEALDKCQLGD---EVRKKEGKLDSKV--TENGENWSM-------GQRQLVCLGRVLLKR 1402
E L G E +++ +L V + G RQ V + L
Sbjct: 112 AEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALN 171
Query: 1403 RKILMLDEATASVDTATDNLIQQSLR--QHFSDCTVITIAHRITSVID--SDMVLLLSHG 1458
K+L+ DE T ++D I L+ Q +I I H + V+ +D V ++ G
Sbjct: 172 PKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDL-GVVAEIADRVAVMYAG 230
Query: 1459 LIEEYDSPRKLLEN 1472
I E ++ +N
Sbjct: 231 RIVEEGPVEEIFKN 244
|
Length = 316 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 69.1 bits (170), Expect = 4e-13
Identities = 54/206 (26%), Positives = 87/206 (42%), Gaps = 50/206 (24%)
Query: 1263 FVLRGISCTF-PGEKKTGIVGRTGSGKSTLIQTL--FRIVEPAAGQILIDGIDISLIGLH 1319
+L+ +S PGE T I+G +G+GKSTL+ L R +G++LI+G +
Sbjct: 23 QLLKNVSGKAKPGEL-TAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLD---KR 78
Query: 1320 DLRTRLSIIPQDPVMFEG-TVRSNVDPLEEYTDEQIWEALD---KCQLGDEVRKKEGKLD 1375
R + +PQD ++ TVR E L K +
Sbjct: 79 SFRKIIGYVPQDDILHPTLTVR---------------ETLMFAAKLR------------- 110
Query: 1376 SKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSD-C 1434
S G+R+ V + L+ +L LDE T+ +D+++ + LR+
Sbjct: 111 --------GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGR 162
Query: 1435 TVITIAHRITSVIDS--DMVLLLSHG 1458
T+I H+ +S I D +LLLS G
Sbjct: 163 TIICSIHQPSSEIFELFDKLLLLSQG 188
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.8 bits (178), Expect = 5e-13
Identities = 61/220 (27%), Positives = 106/220 (48%), Gaps = 40/220 (18%)
Query: 1280 IVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLR----TRLSIIPQD-PVM 1334
I+G +GSGKST+++ L R++EP GQ+LIDG+DI+ I +LR +++++ Q +M
Sbjct: 59 IMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALM 118
Query: 1335 FEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEV------RKKEGKLDSKVTENGENW--- 1385
TV LD G E+ ++E LD+ EN+
Sbjct: 119 PHMTV------------------LDNTAFGMELAGINAEERREKALDALRQVGLENYAHS 160
Query: 1386 -----SMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSL--RQHFSDCTVIT 1438
S G RQ V L R L IL++DEA +++D +Q L Q T++
Sbjct: 161 YPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVF 220
Query: 1439 IAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLENKSSSF 1477
I+H + + D + ++ +G + + +P ++L N ++ +
Sbjct: 221 ISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDY 260
|
Length = 400 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 5e-13
Identities = 67/229 (29%), Positives = 97/229 (42%), Gaps = 46/229 (20%)
Query: 632 HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPW 691
L +I+L + G V + G GSGKS+LL CI SG L + G K P
Sbjct: 13 PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKV---NDPK 69
Query: 692 IQSGKIE-------------------DNILFGKEMDRERYNAVLDACSLEKDLEILSFGD 732
+ I +N++FG R R + +A ++L
Sbjct: 70 VDERLIRQEAGMVFQQFYLFPHLTALENVMFGPL--RVRGASKEEAEKQAREL------- 120
Query: 733 QTVVG--ERG----INLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVL 786
VG ER LSGGQ+QR+ IARAL + LFD+P SA+D L EVL
Sbjct: 121 LAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALD----PELRHEVL 176
Query: 787 LGLLN----SKTVLYVTHQVEFL-PAADLVLVIKDGKITQAGKYTDVIN 830
+ + T++ VTH++ F A ++ I G+I + G +I
Sbjct: 177 KVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIK 225
|
Length = 240 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 5e-13
Identities = 60/231 (25%), Positives = 108/231 (46%), Gaps = 33/231 (14%)
Query: 617 AIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCI-LGEVPKISG 675
+I++ N + L DI L G + + G G+GKSSLL + L E+P+ SG
Sbjct: 2 SIQLNGINCFYGAHQ---ALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPR-SG 57
Query: 676 TLKLCGTKAYVAQSPWIQSGK--------------------IEDNILFG--KEMDRERYN 713
TL + G +++P ++ + +++N++ + + +
Sbjct: 58 TLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQ 117
Query: 714 AVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAV 773
A+ A L K L + + D+ ++LSGGQ+QR+ IARAL + + LFD+P +A+
Sbjct: 118 ALARAEKLLKRLRLKPYADRY-----PLHLSGGQQQRVAIARALMMEPQVLLFDEPTAAL 172
Query: 774 DAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFL-PAADLVLVIKDGKITQAG 823
D + + + T + VTH+VE A V+ +++G I + G
Sbjct: 173 DPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQG 223
|
Length = 242 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 5e-13
Identities = 59/212 (27%), Positives = 89/212 (41%), Gaps = 49/212 (23%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWI--- 692
LKD++ +V G R+ + G G+GKS+LL + G P SGT+ + G + +
Sbjct: 38 LKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVS------SLLGL 91
Query: 693 -------QSGKIEDNILF--------GKEMDRERYNAVLDACSLEKDLEILSFGDQTVVG 737
+G +NI KE+D E+ + +++ L F D V
Sbjct: 92 GGGFNPELTG--RENIYLNGRLLGLSRKEID-EKIDEIIEFSELGD------FIDLPVK- 141
Query: 738 ERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKE----VLLGLL-NS 792
S G K R+ A A + DI L D+ + DA F+E L LL
Sbjct: 142 ----TYSSGMKARLAFAIATALEPDILLIDEVLAVGDAA-----FQEKCQRRLRELLKQG 192
Query: 793 KTVLYVTHQVEFLPA-ADLVLVIKDGKITQAG 823
KTV+ V+H + D LV++ GKI G
Sbjct: 193 KTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 5e-13
Identities = 61/227 (26%), Positives = 97/227 (42%), Gaps = 32/227 (14%)
Query: 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1307
+++ L RY L +S T + ++G G+GKSTL L R+ GQI
Sbjct: 2 LEVAGLSFRYGARR--ALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQIS 59
Query: 1308 IDGIDISLIGLHDLRTRLSIIPQDPVM-FEGTVRSNVDPLEEYTD----------EQIWE 1356
+ G D+ L RL ++ Q P + + +VR N L + +I E
Sbjct: 60 VAGHDLRRAPRAALA-RLGVVFQQPTLDLDLSVRQN---LRYHAALHGLSRAEARARIAE 115
Query: 1357 ALDKCQLGDEVRKKEGKLDSKVTE-NGENWSMGQRQLVCLGRVLLKRRKILMLDEATASV 1415
L + L + + D KV E NG G R+ V + R LL R +L+LDE T +
Sbjct: 116 LLARLGLAE-------RADDKVRELNG-----GHRRRVEIARALLHRPALLLLDEPTVGL 163
Query: 1416 DTATDNLIQQSLRQHFSD--CTVITIAHRITSVIDSDMVLLLSHGLI 1460
D A+ I +R D +V+ H + + D +++L G +
Sbjct: 164 DPASRAAITAHVRALARDQGLSVLWATHLVDEIEADDRLVVLHRGRV 210
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 5e-13
Identities = 71/220 (32%), Positives = 103/220 (46%), Gaps = 43/220 (19%)
Query: 640 NLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG---TKAYVAQSP---WIQ 693
+L V G RVA+ G G+GKS+LL+ I G + SG+L L G T ++ P Q
Sbjct: 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQ 78
Query: 694 SGK------IEDNILFG-------KEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERG 740
+ NI G RE+ +A+ +E L L G+
Sbjct: 79 ENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP-------GQ-- 129
Query: 741 INLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSK------T 794
LSGGQ+QR+ +AR L ++ I L D+PFSA+D L +E +L L++ T
Sbjct: 130 --LSGGQRQRVALARCLVREQPILLLDEPFSALD----PALRQE-MLTLVSQVCQERQLT 182
Query: 795 VLYVTHQVE-FLPAADLVLVIKDGKITQAGKYTDVINSGT 833
+L V+H +E A LV+ DG+I G TD + SG
Sbjct: 183 LLMVSHSLEDAARIAPRSLVVADGRIAWDGP-TDELLSGK 221
|
Length = 232 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 6e-13
Identities = 50/234 (21%), Positives = 104/234 (44%), Gaps = 23/234 (9%)
Query: 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1307
+++ DL Y + +R +S + TG++G G+GK+TL++ + ++ P +G++
Sbjct: 2 LEVTDLTKSYGSKVQ-AVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVT 60
Query: 1308 IDGIDISLIGLHDLRTRLSIIP-QDPVMFEGTVRSNV-------DPLEEYTDEQIWEALD 1359
IDG+D +R ++ ++ + + T R N+ + +I E
Sbjct: 61 IDGVDTVRDPS-FVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSK 119
Query: 1360 KCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTAT 1419
+ QL + + ++ G+ S G +Q V + R L+ IL+LDE T+ +D T
Sbjct: 120 RLQLLEYLDRRVGEF-----------STGMKQKVAIARALVHDPSILVLDEPTSGLDIRT 168
Query: 1420 DNLIQQSLRQHFSDCTVITIAHRITSVIDS--DMVLLLSHGLIEEYDSPRKLLE 1471
++Q ++ + + I +++ D V++L G + S L
Sbjct: 169 RRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDA 222
|
Length = 245 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.4 bits (172), Expect = 6e-13
Identities = 59/196 (30%), Positives = 93/196 (47%), Gaps = 34/196 (17%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSC-------------------------ILG-E 669
LK+IN+ V A+ G G GKS+ L C IL E
Sbjct: 32 LKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPE 91
Query: 670 VPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMDRERYNAVLDACSLEKDLEILS 729
V I +++ + V Q P I +N+ +G + + ++L+ +E L +
Sbjct: 92 VDPIEVRMRI----SMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEE-RVENALRNAA 146
Query: 730 FGDQTV--VGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLL 787
D+ +G+ NLSGGQ+QR+ IARAL D +I LFD+P SA+D + + +E++
Sbjct: 147 LWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASI-EELIS 205
Query: 788 GLLNSKTVLYVTHQVE 803
L N T+L VTH ++
Sbjct: 206 DLKNKVTILIVTHNMQ 221
|
Length = 265 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 7e-13
Identities = 64/213 (30%), Positives = 100/213 (46%), Gaps = 33/213 (15%)
Query: 613 SSETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCI-----L 667
+TA+E+ + N + L DI++++ A G G GKS+LL C L
Sbjct: 21 DEQTALEVRNLNLFYGDKQ---ALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDL 77
Query: 668 GEVPKISGTLKLCGTKAY---------------VAQSPWIQSGKIEDNILFGKEMDRERY 712
+ +I G ++L G Y V Q P I +N+++G +
Sbjct: 78 VDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINN 137
Query: 713 NAVLDACSLEKDLEILSFGDQTVVGER----GINLSGGQKQRIQIARALYQDADIYLFDD 768
VLD ++E+ L + D+ V +R LSGGQ+QR+ IARA+ + ++ L D+
Sbjct: 138 RRVLDE-AVERSLRGAALWDE--VKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDE 194
Query: 769 PFSAVDAHTGSHLFKEVLLGLLNSK-TVLYVTH 800
P SA+D S L E L+ L SK T++ VTH
Sbjct: 195 PTSALDPI--STLKIEELITELKSKYTIVIVTH 225
|
Length = 272 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 7e-13
Identities = 64/234 (27%), Positives = 105/234 (44%), Gaps = 40/234 (17%)
Query: 615 ETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKIS 674
+ IE+ D +F + + LK ++L + G + A+ G G+GKS+LL + G
Sbjct: 2 DNIIEVEDLHFRYKDGTK--ALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQR 59
Query: 675 GTLKLCGTKAYVAQSPWIQ---------------SGKIEDNILFG--------KEMDRER 711
G +K+ G + W++ S + D++ FG E++R R
Sbjct: 60 GRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVER-R 118
Query: 712 YNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFS 771
L A + F D+ +LS GQK+R+ IA L D D+ + D+P +
Sbjct: 119 VEEALKAVRMWD------FRDKP-----PYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMA 167
Query: 772 AVDAHTGSHLFKEVLLGLLNS-KTVLYVTHQVEF-LPAADLVLVIKDGKITQAG 823
+D G E+L L N KTV+ TH V+ AD V+V+K+G++ G
Sbjct: 168 YLDP-RGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEG 220
|
Length = 274 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 9e-13
Identities = 51/216 (23%), Positives = 95/216 (43%), Gaps = 48/216 (22%)
Query: 1263 FVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLR 1322
+ G+S + + G+VG +G GKSTL + + + EP +G+IL +G DI+ +
Sbjct: 27 KAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKL------ 80
Query: 1323 TRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENG 1382
+E E++ E L+K L +E + ++
Sbjct: 81 -----------------------SKEERRERVLELLEKVGLPEEFL---YRYPHEL---- 110
Query: 1383 ENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATD----NLIQQSLRQHFSDCTVIT 1438
S GQRQ + + R L K+++ DE +++D + NL++ L++ T +
Sbjct: 111 ---SGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKD-LQEELG-LTYLF 165
Query: 1439 IAHRITSVID--SDMVLLLSHGLIEEYDSPRKLLEN 1472
I+H + SV+ SD + ++ G I E ++ N
Sbjct: 166 ISHDL-SVVRYISDRIAVMYLGKIVEIGPTEEVFSN 200
|
Length = 268 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.9 bits (171), Expect = 9e-13
Identities = 59/239 (24%), Positives = 104/239 (43%), Gaps = 28/239 (11%)
Query: 613 SSETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCI-----L 667
+ E + + N + L DI + + A+ G G GKS+LL C L
Sbjct: 2 TMEIILSTKNLNLWY---GEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDL 58
Query: 668 GEVPKISGTLKLCGTK---------------AYVAQSPWIQSGKIEDNILFGKEMDRERY 712
+I+G + G V Q P I +N+ +G + E+
Sbjct: 59 IPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKN 118
Query: 713 NAVLDACSLEKDLEILSFGDQTV--VGERGINLSGGQKQRIQIARALYQDADIYLFDDPF 770
LD +EK L+ + D+ + + ++LSGGQ+QR+ IAR L + ++ L D+P
Sbjct: 119 KKTLDTI-VEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPC 177
Query: 771 SAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLP-AADLVLVIKDGKITQAGKYTDV 828
SA+D + + ++++ L TV+ VTH ++ +D + GK+ + K T +
Sbjct: 178 SALDPIATAKI-EDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQI 235
|
Length = 253 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.6 bits (170), Expect = 9e-13
Identities = 56/246 (22%), Positives = 112/246 (45%), Gaps = 29/246 (11%)
Query: 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVE-----P 1301
K++ ++L + Y L I+ K T ++G +G GKST ++ L R+ +
Sbjct: 4 KMESKNLNLWYGEKQ--ALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVK 61
Query: 1302 AAGQILIDGIDI--SLIGLHDLRTRLSIIPQDPVMFEGTVRSNV----------DPLEEY 1349
G++L+DG +I + + +LR R+ ++ Q P F ++ NV D E
Sbjct: 62 IEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKE-- 119
Query: 1350 TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLD 1409
D+ + AL K L DEV+ + ++ S GQ+Q +C+ R + + ++++D
Sbjct: 120 LDKIVEWALKKAALWDEVK-------DDLKKSALKLSGGQQQRLCIARTIAVKPDVILMD 172
Query: 1410 EATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRK 1468
E T+++D + I+ + + + T++ + H + SD G + E++ K
Sbjct: 173 EPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEK 232
Query: 1469 LLENKS 1474
+
Sbjct: 233 IFLEPQ 238
|
Length = 251 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 69.9 bits (171), Expect = 1e-12
Identities = 73/273 (26%), Positives = 123/273 (45%), Gaps = 31/273 (11%)
Query: 633 NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT---------- 682
N L++I+ + G RV + G GSGKS+LLS L + G +++ G
Sbjct: 17 NAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFL-RLLNTEGDIQIDGVSWNSVPLQKW 75
Query: 683 -KAY--VAQSPWIQSGKIEDNI-LFGKEMDRERYNAVLDACSLEKDLEILSFGDQT--VV 736
KA+ + Q +I SG N+ +GK D E + V + L+ +E F Q V+
Sbjct: 76 RKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWK-VAEEVGLKSVIE--QFPGQLDFVL 132
Query: 737 GERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVL 796
+ G LS G KQ + +AR++ A I L D+P + +D T + ++ L TV+
Sbjct: 133 VDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPIT-YQVIRKTLKQAFADCTVI 191
Query: 797 YVTHQVEFLPAADLVLVIKDGKITQAGKYTDVINSGTDFMELVDAHKQALSTLDSIEGRP 856
H++E + LVI++ K+ Q ++N + F KQA+S D ++ P
Sbjct: 192 LSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHF-------KQAISPSDRLKLFP 244
Query: 857 LSEKGSANGENDGTSATDGVVKEVENKEVQNDR 889
+ + ++E +EVQ+ R
Sbjct: 245 RRNSSKSKRKPRPQIQA---LQEETEEEVQDTR 274
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 1e-12
Identities = 65/247 (26%), Positives = 110/247 (44%), Gaps = 40/247 (16%)
Query: 618 IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTL 677
IE+ + F + TL D++ V G +++ G GSGKS+ + I G + SG +
Sbjct: 5 IEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQI 64
Query: 678 KLCGTK-------------AYVAQSPWIQ--SGKIEDNILFG--------KEMDRERYNA 714
+ G V Q+P Q +ED++ FG +EM +ER N
Sbjct: 65 IIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEM-KERVNE 123
Query: 715 VLDACSLE--KDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSA 772
L+ ++ K+ E LSGGQKQR+ IA A+ I + D+ S
Sbjct: 124 ALELVGMQDFKERE-------------PARLSGGQKQRVAIAGAVAMRPKIIILDEATSM 170
Query: 773 VDAHTGSHLFKEVL-LGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVINS 831
+D L K + + TV+ +TH ++ + +D VLV+K+G++ ++ +
Sbjct: 171 LDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230
Query: 832 GTDFMEL 838
G D ++L
Sbjct: 231 GNDLLQL 237
|
Length = 279 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 1e-12
Identities = 101/440 (22%), Positives = 166/440 (37%), Gaps = 80/440 (18%)
Query: 430 ALSFLILYKSLGIASVA-------AFFGTVIFMLVN---VPLSTVQEK----FQNELMK- 474
L+F I S GI A +++ L+ + L+ ++K F+ L++
Sbjct: 192 GLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYSLVRV 251
Query: 475 ------------SKDERMKAT---SEILRNMRILKLQGWELKFLSKTIDLRKSESGWLKR 519
K ER + +L N R +L +++ GWL
Sbjct: 252 RENAEAIALYRGEKVERRRLDDRFDAVLGNWR--RLVRAQIRLTWFQ-----LGYGWL-- 302
Query: 520 CLYTSSITSFVFWCAPTFVS-VITFGTCILLKVPLESGKVLSAIATFRLLQILIYKLPAI 578
S+ + AP + S ITFG L++ G+V S+++ F I AI
Sbjct: 303 -----SVVLPILIAAPRYFSGQITFGG--LMQAVGAFGQVHSSLSWF------IDNYDAI 349
Query: 579 ISMTIQTKVSLQRIASF-FCLDELQPDLVEKQPRGSSETAIEIADG-----NFSWDISSH 632
+ +L R+A F L+ Q D + G + AD N S
Sbjct: 350 ADW----RATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDG 405
Query: 633 NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKA--YVAQSP 690
L ++N +V G R+ + G G+GK+SLL + G P SG + + A ++ Q P
Sbjct: 406 QTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRP 465
Query: 691 WIQSGKIEDNILF---GKEMDRERYNAVLDACSLEK---DLEILSFGDQTVVGERGINLS 744
++ G + + + + + AVL L L+ D+ LS
Sbjct: 466 YLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRV--------LS 517
Query: 745 GGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEF 804
GG++QR+ AR L D+ SA+D T L+ ++L L TV+ V H+
Sbjct: 518 GGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLY-QLLKEELPDATVISVGHRPTL 576
Query: 805 LPAADLVLVIKDGKITQAGK 824
L + D Q K
Sbjct: 577 WNFHSRQLELLDDAGGQNLK 596
|
Length = 604 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 1e-12
Identities = 58/229 (25%), Positives = 103/229 (44%), Gaps = 30/229 (13%)
Query: 1265 LRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTR 1324
L +S P + ++G +GSGK+TL++ + + P +G IL G D + ++ R
Sbjct: 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATD---VPVQER 74
Query: 1325 -LSIIPQDPVMFEG-TVRSNV-----------DPLEEYTDEQIWEALDKCQLGDEVRKKE 1371
+ + Q +F TV NV P E ++ E L QL +
Sbjct: 75 NVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQL-------D 127
Query: 1372 GKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHF 1431
D + S GQRQ V L R L K+L+LDE ++D +++ LR+
Sbjct: 128 WLADRYPAQ----LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLH 183
Query: 1432 SDCTVITI--AHRITSVID-SDMVLLLSHGLIEEYDSPRKLLENKSSSF 1477
+ V T+ H ++ +D V++++ G IE+ +P ++ ++ +S F
Sbjct: 184 DELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDHPASPF 232
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 1e-12
Identities = 68/244 (27%), Positives = 117/244 (47%), Gaps = 31/244 (12%)
Query: 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRI--VEP---A 1302
+ + DL V Y L +S F + T ++G +GSGKSTL++++ R+ + P
Sbjct: 6 LQVSDLSVYYNKKK--ALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTI 63
Query: 1303 AGQILIDGIDI--SLIGLHDLRTRLSIIPQDPVMFEGTVRSNV----------DPLEEYT 1350
G I+ +G +I DLR + ++ Q P F ++ NV D ++
Sbjct: 64 TGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKD--KQVL 121
Query: 1351 DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDE 1410
DE + ++L + DEV K+ DS + +G GQ+Q VC+ RVL KI++LDE
Sbjct: 122 DEAVEKSLKGASIWDEV--KDRLHDSALGLSG-----GQQQRVCIARVLATSPKIILLDE 174
Query: 1411 ATASVDTATDNLIQQSLRQHFSDCTVITIAHRI--TSVIDSDMVLLLSHGLIEEYDSPRK 1468
T+++D + I+++L D T++ + + S I L LI EY+ ++
Sbjct: 175 PTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLI-EYNDTKQ 233
Query: 1469 LLEN 1472
+ N
Sbjct: 234 MFMN 237
|
Length = 252 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 1e-12
Identities = 62/240 (25%), Positives = 110/240 (45%), Gaps = 30/240 (12%)
Query: 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1307
I + ++ Y + VL +S P T I+G G+GKSTL+ + R+++ +G+I
Sbjct: 2 ITIENVSKSYGTKV--VLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEIT 59
Query: 1308 IDGIDISLIGLHDLRTRLSIIPQ-----------DPVMFEGTVRSNVDPLEEYTDEQ-IW 1355
IDG++++ +L +LSI+ Q D V F S +E D + I
Sbjct: 60 IDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKE--DRRIIN 117
Query: 1356 EALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASV 1415
EA++ L D + LD S GQRQ + VL + ++LDE ++
Sbjct: 118 EAIEYLHLED---LSDRYLDE--------LSGGQRQRAFIAMVLAQDTDYVLLDEPLNNL 166
Query: 1416 DTATDNLIQQSLRQHFSDC--TVITIAHRIT-SVIDSDMVLLLSHGLIEEYDSPRKLLEN 1472
D I + LR+ + T++ + H I + SD ++ L +G + + SP ++++
Sbjct: 167 DMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQP 226
|
Length = 252 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 1e-12
Identities = 64/247 (25%), Positives = 105/247 (42%), Gaps = 35/247 (14%)
Query: 1248 IDLRDLQVRYAPHMPF-------VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVE 1300
+++RD+ Y F VL +S + + G++GR+G GKSTL + L + +
Sbjct: 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK 62
Query: 1301 PAAGQILIDGIDISLI---GLHDLRTRLSIIPQD---PVMFEGTVRSNV-DPLEEYTD-- 1351
PA G + G D+ + R + ++ QD V TVR + +PL T
Sbjct: 63 PAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLD 122
Query: 1352 -----EQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKIL 1406
+I E LD L E K + S GQ Q + + R L + K++
Sbjct: 123 ESEQKARIAELLDMVGLRSEDADKLPR----------QLSGGQLQRINIARALAVKPKLI 172
Query: 1407 MLDEATASVDTATDNLIQQSLR--QHFSDCTVITIAHRITSVID-SDMVLLLSHG-LIEE 1462
+LDEA +++D +I + LR Q + I H + V V ++ G ++EE
Sbjct: 173 VLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEE 232
Query: 1463 YDSPRKL 1469
D + L
Sbjct: 233 CDVAQLL 239
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 67.7 bits (165), Expect = 2e-12
Identities = 47/201 (23%), Positives = 95/201 (47%), Gaps = 7/201 (3%)
Query: 1265 LRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTR 1324
L I+ P + T IVG+ G GKS+L+ + ++ G++ + S R+R
Sbjct: 17 LSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSR 76
Query: 1325 ----LSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTE 1380
++ Q P + TV N+ + ++ D C L ++ +++ E
Sbjct: 77 NRYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGE 136
Query: 1381 NGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDT-ATDNLIQQSLRQHFSD--CTVI 1437
G N S GQRQ +C+ R L + I+ LD+ +++D +D+L+Q+ + + D T++
Sbjct: 137 RGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLV 196
Query: 1438 TIAHRITSVIDSDMVLLLSHG 1458
+ H++ + +D ++ + G
Sbjct: 197 LVTHKLQYLPHADWIIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 2e-12
Identities = 60/246 (24%), Positives = 118/246 (47%), Gaps = 34/246 (13%)
Query: 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAA--- 1303
K ++ +L + Y + L+ I+ P + T ++G +G GKSTL++ L R+ +
Sbjct: 3 KFNIENLDLFYGENQ--ALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVK 60
Query: 1304 --GQILIDGIDI-SLIGLHDLRTRLSIIPQDPVMFEGTVRSNV----------DPLEEYT 1350
G++ +DG DI I + DLR ++ ++ Q P F ++ NV D ++
Sbjct: 61 ITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKD--KKVL 118
Query: 1351 DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDE 1410
DE + +L L DEV+ +L S + S GQ+Q +C+ R + ++++DE
Sbjct: 119 DEVVERSLRGAALWDEVKD---RLKS----HAFGLSGGQQQRLCIARTIAMEPDVILMDE 171
Query: 1411 ATASVDTATDNLIQQ---SLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSP 1466
T+++D + I++ L++++ T++ + H + SD G + E+D
Sbjct: 172 PTSALDPIATHKIEELMEELKKNY---TIVIVTHSMQQARRISDRTAFFLMGELVEHDDT 228
Query: 1467 RKLLEN 1472
+ + N
Sbjct: 229 QVIFSN 234
|
Length = 249 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.9 bits (168), Expect = 2e-12
Identities = 62/237 (26%), Positives = 108/237 (45%), Gaps = 21/237 (8%)
Query: 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1307
I L ++ Y P L I+ + GI+G+ GSGKSTL L ++ P G++L
Sbjct: 2 IRLENVSYSYPDGTP-ALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVL 60
Query: 1308 IDGIDI-SLIGLHDLRTRLSIIPQDP-VMFEG-TVRSNVDPLEEYTDEQIWEALDKCQLG 1364
+ GID L +R + I+ Q+P F G TV ++ + E + C
Sbjct: 61 VSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDL----AFGPENL------CLPP 110
Query: 1365 DEVRKK------EGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTA 1418
E+RK+ E L+ + + S GQ Q V L +L + L+ DE T+ +D
Sbjct: 111 IEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPD 170
Query: 1419 TDNLIQQSLRQ-HFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKS 1474
+ + + +++ H T++ I H + + D+D ++++ G I P +L + S
Sbjct: 171 SGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSDVS 227
|
Length = 274 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 67.2 bits (165), Expect = 2e-12
Identities = 49/202 (24%), Positives = 86/202 (42%), Gaps = 34/202 (16%)
Query: 626 SWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILG--EVPKISGTLKLCGTK 683
S S LK+++ K G A+ G G+GKS+LL+ + G +SG + + G
Sbjct: 15 SSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRP 74
Query: 684 AYVAQSPWIQSGKI-EDNILFGKEMDRE--RYNAVLDACSLEKDLEILSFGDQTVVGERG 740
+S G + +D+IL RE + A L RG
Sbjct: 75 LD-KRSFRKIIGYVPQDDILHPTLTVRETLMFAAKL----------------------RG 111
Query: 741 INLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL-LNSKTVLYVT 799
+ SGG+++R+ IA L + + D+P S +D+ + + +L L +T++
Sbjct: 112 L--SGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMS-LLRRLADTGRTIICSI 168
Query: 800 HQV--EFLPAADLVLVIKDGKI 819
HQ E D +L++ G++
Sbjct: 169 HQPSSEIFELFDKLLLLSQGRV 190
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 2e-12
Identities = 58/215 (26%), Positives = 95/215 (44%), Gaps = 39/215 (18%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAY-----VAQSP 690
LKDI+ +++ G RV + G G+GKS+LL I G SG +K+ G A P
Sbjct: 43 LKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDP 102
Query: 691 WIQSGKIEDNILF--------GKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGIN 742
+G+ +NI KE+D E+ + +++ L F DQ V
Sbjct: 103 -ELTGR--ENIYLRGLILGLTRKEID-EKVDEIIEFAELGD------FIDQPVK-----T 147
Query: 743 LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL-----NSKTVLY 797
S G R+ + A + + DI L D+ + DA F+E L L +KT++
Sbjct: 148 YSSGMYARLAFSVATHVEPDILLLDEVLAVGDAA-----FQEKCLERLNELVEKNKTIVL 202
Query: 798 VTHQVEFLP-AADLVLVIKDGKITQAGKYTDVINS 831
V+H + + D + ++ G+I G +VI +
Sbjct: 203 VSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIPA 237
|
Length = 249 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.8 bits (168), Expect = 2e-12
Identities = 71/267 (26%), Positives = 124/267 (46%), Gaps = 43/267 (16%)
Query: 1244 SHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAA 1303
S K+++ DL RY H VL+G+S I+G +GSGKST ++ + + +P+
Sbjct: 2 SENKLNVIDLHKRYGEHE--VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSE 59
Query: 1304 GQILIDGIDISLI-------------GLHDLRTRLSIIPQDPVMFEG-TVRSNV--DPLE 1347
G I+++G I+L+ L LRTRL+++ Q ++ TV NV P++
Sbjct: 60 GSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQ 119
Query: 1348 ------EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLK 1401
+ E+ + L K + + + K + S GQ+Q V + R L
Sbjct: 120 VLGLSKQEARERAVKYLAKVGIDERAQGKYPV----------HLSGGQQQRVSIARALAM 169
Query: 1402 RRKILMLDEATASVDTATDNLIQQSLR--QHFSD--CTVITIAHRITSVID-SDMVLLLS 1456
++L+ DE T+++D L+ + LR Q ++ T++ + H + S V+ L
Sbjct: 170 EPEVLLFDEPTSALDP---ELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLH 226
Query: 1457 HGLIEEYDSPRKLLEN-KSSSFSQLVA 1482
G IEE +P +L N +S Q +
Sbjct: 227 QGKIEEEGAPEQLFGNPQSPRLQQFLK 253
|
Length = 257 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 2e-12
Identities = 58/217 (26%), Positives = 96/217 (44%), Gaps = 17/217 (7%)
Query: 1264 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRT 1323
++ G+ T P TG++G GSGKSTL++ L + P AG + + G+D LH L
Sbjct: 16 IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVD-----LHGLSR 70
Query: 1324 R-----LSIIPQD-PVMFEGTVRSNVDPLEEYTDEQIW--EALDKCQLGDEVRKKEGKLD 1375
R ++++ QD TVR V L +W ++ + D + L
Sbjct: 71 RARARRVALVEQDSDTAVPLTVRDVV-ALGRIPHRSLWAGDSPHDAAVVDRALARTE-LS 128
Query: 1376 SKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSD-C 1434
+ S G+RQ V + R L + K+L+LDE T +D +R+ +
Sbjct: 129 HLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGV 188
Query: 1435 TVITIAHRIT-SVIDSDMVLLLSHGLIEEYDSPRKLL 1470
TV+ H + + D V++L G + PR++L
Sbjct: 189 TVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVL 225
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 2e-12
Identities = 49/172 (28%), Positives = 78/172 (45%), Gaps = 20/172 (11%)
Query: 1264 VLRGIS-CTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLR 1322
+ G+S GE + G GSGK+TL++ + ++ PAAG I +DG D I D+
Sbjct: 17 LFSGLSFTLAAGEA-LVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGD---IDDPDVA 72
Query: 1323 TRLSII-PQDPVMFEGTVRSNVDPLEEY---TDEQIWEALDKCQLGDEVRKKEGKLDSKV 1378
+ ++ + TV N++ + + I AL+ L G L
Sbjct: 73 EACHYLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYL---- 128
Query: 1379 TENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQH 1430
S GQ++ V L R+L+ R I +LDE TA++D A L + +R H
Sbjct: 129 -------SAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAH 173
|
Length = 207 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 2e-12
Identities = 55/191 (28%), Positives = 83/191 (43%), Gaps = 28/191 (14%)
Query: 1248 IDLRDLQVRYAPHMPF---VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAG 1304
I L + + P L G+S ++G G+GKSTL+ + ++P +G
Sbjct: 2 ISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSG 61
Query: 1305 QILIDGIDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQ---IWEALDKC 1361
QILIDG+D++ + L+ + QDP+ GT E T E+ + E+ K
Sbjct: 62 QILIDGVDVTKKSVAKRANLLARVFQDPLA--GTA-------PELTIEENLALAESRGKK 112
Query: 1362 ----QLGDEVRKKEGKLDSKVTENG-EN--------WSMGQRQLVCLGRVLLKRRKILML 1408
+E R+ + G EN S GQRQ + L L KIL+L
Sbjct: 113 RGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLL 172
Query: 1409 DEATASVDTAT 1419
DE TA++D T
Sbjct: 173 DEHTAALDPKT 183
|
Length = 263 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 2e-12
Identities = 67/236 (28%), Positives = 112/236 (47%), Gaps = 19/236 (8%)
Query: 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEP---AAG 1304
++ + + Y L IS + P T ++G GSGKST+ + + ++ P
Sbjct: 6 VEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNS 65
Query: 1305 QILIDGIDISLIGLHDLRTRLSIIPQDP-VMFEG-TVRSNVD-PLEEYTDEQIWEALDKC 1361
+I +DGI ++ + D+R ++ I+ Q+P F G TV +V LE A+ +
Sbjct: 66 KITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLEN-------RAVPRP 118
Query: 1362 QLGDEVRK---KEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTA 1418
++ VR G LD +E N S GQ+Q V + +L KI++LDE+T+ +D A
Sbjct: 119 EMIKIVRDVLADVGMLDYIDSEP-ANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPA 177
Query: 1419 TDNLIQQSLRQHFSD--CTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLEN 1472
I + +R+ TVI+I H I +D VL+L G + SP ++
Sbjct: 178 GKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFSK 233
|
Length = 282 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 69.6 bits (170), Expect = 3e-12
Identities = 54/258 (20%), Positives = 111/258 (43%), Gaps = 32/258 (12%)
Query: 1246 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAA-- 1303
G I + L+V Y VL +S + ++G++G GK+TL++ + V+ A
Sbjct: 4 GGIRIDHLRVAY--GANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLT 61
Query: 1304 GQILIDGIDISLIGLHDLRTRLSIIPQDPVMFEG-TVRSNV-------DPLEEYTDEQIW 1355
G+I I D++ H + L+++ Q+ +F V NV + E++
Sbjct: 62 GRIAIADRDLTHAPPH--KRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVA 119
Query: 1356 EALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASV 1415
+AL LGD +L S G +Q + + R + +L+LDE +++
Sbjct: 120 DALKLVGLGDAAAHLPAQL-----------SGGMQQRIAIARAIAIEPDVLLLDEPLSAL 168
Query: 1416 DTAT-DNLIQQSLRQH--FSDCTVITIAH-RITSVIDSDMVLLLSHGLIEEYDSPRKLLE 1471
D N+ ++ H + T++ + H + ++ +D ++ G + + P+ L +
Sbjct: 169 DANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYD 228
Query: 1472 NKSSSFSQLVAEYTQRSS 1489
+ F AE+ ++
Sbjct: 229 APADGF---AAEFLGAAN 243
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 69.8 bits (171), Expect = 3e-12
Identities = 57/226 (25%), Positives = 95/226 (42%), Gaps = 48/226 (21%)
Query: 638 DINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGK- 696
D + + A+ G GSGK++L+ I +G + + + S K
Sbjct: 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLI-------AGLTRPDEGEIVLNGRTLFDSRKG 67
Query: 697 ------------------------IEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGD 732
+ N+ +G +R S E+ +E+L G
Sbjct: 68 IFLPPEKRRIGYVFQEARLFPHLSVRGNLRYG----MKRARPSERRISFERVIELLGIGH 123
Query: 733 QTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVL--LGLL 790
++G LSGG+KQR+ I RAL + L D+P +A+D E+L L L
Sbjct: 124 --LLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALD----DPRKYEILPYLERL 177
Query: 791 NSKT---VLYVTHQV-EFLPAADLVLVIKDGKITQAGKYTDVINSG 832
+++ +LYV+H + E L AD V+V++DG++ AG +V S
Sbjct: 178 HAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASP 223
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 3e-12
Identities = 55/228 (24%), Positives = 99/228 (43%), Gaps = 34/228 (14%)
Query: 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1307
I+ ++ Y + L +S + + G +G+GK+TL++ L+ + P+ GQ+
Sbjct: 2 IEFHNVSKAYPGGVA-ALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVR 60
Query: 1308 IDGIDISLIGLHD-----LRTRLSIIPQD-PVMFEGTVRSNVD-PLE-EYTDEQIW---- 1355
I G D++ L LR R+ ++ QD ++ + TV NV PLE E+
Sbjct: 61 IAGEDVN--RLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRV 118
Query: 1356 -EALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATAS 1414
AL + L + +L S G++Q V + R ++ +L+ DE T +
Sbjct: 119 GAALRQVGLEHKADAFPEQL-----------SGGEQQRVAIARAIVNSPPLLLADEPTGN 167
Query: 1415 VDTATDNLIQQSLRQ-HFSDCTVITIAHRITSVIDSDMVLLLSHGLIE 1461
+D I L++ + TVI H D +V ++H +I
Sbjct: 168 LDPDLSERILDLLKRLNKRGTTVIVATH------DLSLVDRVAHRVII 209
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 3e-12
Identities = 43/173 (24%), Positives = 69/173 (39%), Gaps = 17/173 (9%)
Query: 1263 FVLRGISCTF-PGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDL 1321
+ +S T GE I G G+GK+TL++ L ++ P AG++ G I +
Sbjct: 16 TLFSDLSFTLNAGEA-LQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYH 74
Query: 1322 RTRLSIIPQDPVMFEGTVRSNV----DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSK 1377
+ L + Q + E T N+ IWEAL + L G+L
Sbjct: 75 QALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQL--- 131
Query: 1378 VTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQH 1430
S GQ++ V L R+ L + +LDE ++D L+ + H
Sbjct: 132 --------SAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAH 176
|
Length = 209 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.6 bits (165), Expect = 4e-12
Identities = 59/218 (27%), Positives = 103/218 (47%), Gaps = 27/218 (12%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCIL---GEVP--KISGTLKLCGTKAY----- 685
+K++ +K+F A+ G G GK++LL I +P ++ G + G Y
Sbjct: 19 VKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLD 78
Query: 686 ----------VAQSPWIQSGKIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQTV 735
V Q P I DN+ FG + + LD +E+ L+ + D+
Sbjct: 79 VTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRI-VEESLKKAALWDEVK 137
Query: 736 --VGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSK 793
+ + G LSGGQ+QR+ IARAL + ++ L D+P SA+D + E LL L+
Sbjct: 138 SELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRI--EKLLEELSEN 195
Query: 794 -TVLYVTHQV-EFLPAADLVLVIKDGKITQAGKYTDVI 829
T++ VTH + + + AD + + G++ + G +++
Sbjct: 196 YTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIV 233
|
Length = 250 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.7 bits (165), Expect = 4e-12
Identities = 56/192 (29%), Positives = 90/192 (46%), Gaps = 24/192 (12%)
Query: 633 NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCI-----LGEVPKISGTLKLCGTKAY-- 685
LK I+L A+ G G GKS+ L + L I+G + L G Y
Sbjct: 18 FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAP 77
Query: 686 -------------VAQSPWIQSGKIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGD 732
V Q P I +N+++G + + AVLD ++E L+ + D
Sbjct: 78 NEDVVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDE-AVETSLKQAAIWD 136
Query: 733 QTV--VGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL 790
+ + E ++LSGGQ+QR+ IAR L D+ L D+P SA+D + + + + +LL L
Sbjct: 137 EVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQI-ENMLLELR 195
Query: 791 NSKTVLYVTHQV 802
+ T++ VTH +
Sbjct: 196 DQYTIILVTHSM 207
|
Length = 252 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 64.8 bits (159), Expect = 4e-12
Identities = 46/191 (24%), Positives = 72/191 (37%), Gaps = 64/191 (33%)
Query: 633 NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK--AYVAQSP 690
LKDI+L + G R+ + G G+GKS+LL I GE+ G + T Y Q
Sbjct: 13 KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQ-- 70
Query: 691 WIQSGKIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQR 750
LS GG+K R
Sbjct: 71 -------------------------------------LS---------------GGEKMR 78
Query: 751 IQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNS--KTVLYVTHQVEFLPA- 807
+ +A+ L ++ ++ L D+P + +D + E L L TV+ V+H FL
Sbjct: 79 LALAKLLLENPNLLLLDEPTNHLDLES-----IEALEEALKEYPGTVILVSHDRYFLDQV 133
Query: 808 ADLVLVIKDGK 818
A ++ ++DGK
Sbjct: 134 ATKIIELEDGK 144
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 5e-12
Identities = 43/175 (24%), Positives = 72/175 (41%), Gaps = 19/175 (10%)
Query: 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1307
+ DL Y VL IS + G +G G+GK+T ++ + +++P +G+I
Sbjct: 1 LKTNDLTKTYGKKR--VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEIT 58
Query: 1308 IDGIDISLIGLHDLRTRLSIIPQDPVMF-EGTVRSNVDPLEEYT---DEQIWEALDKCQL 1363
DG + R+ + + P + T R N+ L ++I E LD L
Sbjct: 59 FDGKSYQ--KNIEALRRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGL 116
Query: 1364 GDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTA 1418
D +KK S+G +Q + + LL +L+LDE T +D
Sbjct: 117 KDSAKKKVKGF-----------SLGMKQRLGIALALLGNPDLLILDEPTNGLDPD 160
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 7e-12
Identities = 78/312 (25%), Positives = 129/312 (41%), Gaps = 66/312 (21%)
Query: 1215 SVERIFQ-----YT--CIPSEPPLEIEESRPNHSWPSHGK--IDLRDLQVRYAPHMPFVL 1265
+ E +F YT + +EP P P +++ DL+V + F+
Sbjct: 241 TTETLFAAPQHPYTRKLLAAEP-----SGDPPPL-PEDAPVLLEVEDLRVWFPIKGGFLR 294
Query: 1266 R---------GISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLI 1316
R GIS T + G+VG +GSGKSTL L R++ G+I DG DI
Sbjct: 295 RTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPS-QGEIRFDGQDID-- 351
Query: 1317 GLHD-----LRTRLSIIPQDP------------VMFEGTVRSNVDPLEEYTDEQIWEALD 1359
GL LR R+ ++ QDP ++ EG D+++ EAL
Sbjct: 352 GLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEAL- 410
Query: 1360 KCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTAT 1419
+EV + E +S GQRQ + + R L+ + ++++LDE T+++D +
Sbjct: 411 -----EEVGLDPATRNRYPHE----FSGGQRQRIAIARALILKPELILLDEPTSALDRSV 461
Query: 1420 DNLIQQSLR--QHFSDCTVITIAHRITSVID--SDMVLLLSHGLIEEYDSPRKLLENKSS 1475
+ LR Q + + I+H + +V+ V+++ G I E + N
Sbjct: 462 QAQVLDLLRDLQQKHGLSYLFISHDL-AVVRALCHRVIVMRDGKIVEQGPTEAVFANPQH 520
Query: 1476 SFSQLVAEYTQR 1487
EYT+
Sbjct: 521 -------EYTRA 525
|
Length = 534 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 8e-12
Identities = 67/256 (26%), Positives = 112/256 (43%), Gaps = 43/256 (16%)
Query: 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQI 1306
+++ DL RY H VL+G+S I+G +GSGKST ++ + + +P+AG I
Sbjct: 6 ALEVEDLHKRYGEHE--VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSI 63
Query: 1307 LIDGIDISLIG-------------LHDLRTRLSIIPQD------PVMFEGTVRSNVDPLE 1347
++G +I L L LRTRL ++ Q + E + + V L
Sbjct: 64 RVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLG 123
Query: 1348 EYTDEQIWEA---LDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRK 1404
E I A L K + ++ L S GQ+Q V + R L +
Sbjct: 124 VSKAEAIERAEKYLAKVGIAEKADAYPAHL-----------SGGQQQRVAIARALAMEPE 172
Query: 1405 ILMLDEATASVDTATDNLIQQSLR--QHFSD--CTVITIAHRITSVID-SDMVLLLSHGL 1459
+++ DE T+++D L+ + L+ Q ++ T++ + H + D S V+ L G
Sbjct: 173 VMLFDEPTSALDP---ELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGK 229
Query: 1460 IEEYDSPRKLLENKSS 1475
IEE P ++ N S
Sbjct: 230 IEEEGPPEQVFGNPQS 245
|
Length = 256 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 8e-12
Identities = 109/512 (21%), Positives = 201/512 (39%), Gaps = 58/512 (11%)
Query: 969 LLIVFVALAFGSSFCILARSTLLATAGYKTATLLFNKMHYCIFRAPMSFFDATPSGRIIN 1028
LL++F+ + S L +TL YK + K I P+ + S R++
Sbjct: 57 LLLLFMVSSLISQ---LGLTTLGQHFIYKLRSEFIKK----ILDTPLERIERLGSARLLA 109
Query: 1029 RASTDQSAVDLSIPALIGSFAFSIIRVLGVIGVMSLVAWQVFIVFIPVIATCIWYQQY-- 1086
++D + + L +II LG ++ ++ ++F++ + I IW
Sbjct: 110 GLTSDVRNISFAFSRLP-ELVQAIILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLM 168
Query: 1087 -----YISSARELSRLVGVCKAPLIQHFAETVSGSTTIR------SFDQESRFIDTNMEL 1135
++++ARE + L + + G + + + +I E
Sbjct: 169 ARVYKHMAAARET-------EDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQEY 221
Query: 1136 MDGYSRPTFHVAAAMEWLGFRLDMLSNITF--AFSLVFLISIPKGFIDPAIAGLAVTYGL 1193
R A+ W SNI LVF +++ G+ +A T L
Sbjct: 222 RHHIIRANTFHLLAVNW--------SNIMLLGLIGLVFWLALSLGWASTN---VAATIVL 270
Query: 1194 TLNNLQAMLIWLACQMENKIISVERIFQYTCIPSEPPLEIEESRPNHSWPSHGKIDLRDL 1253
L L+ L+ + +++ + F P + ++P ++LR+
Sbjct: 271 VLLFLRTPLLSAVGILPT-LLTAQVAFNKIAKLELAP-YKADFPRPQAFPDWKTLELRN- 327
Query: 1254 QVRYAPH-MPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGID 1312
VR+A F + I+ T + ++G GSGKSTL L + +P +G+IL+DG
Sbjct: 328 -VRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKP 386
Query: 1313 ISLIGLHDLRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEG 1372
+S L D R S + D +F+ + + ++ W L + +L + +G
Sbjct: 387 VSAEQLEDYRKLFSAVFSDYHLFDQLLGPEGKASPQLIEK--W--LQRLELAHKTSLNDG 442
Query: 1373 KLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFS 1432
+ + S GQ++ + L LL+ R IL+LDE A D A Q L
Sbjct: 443 RFSNL------KLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLK 496
Query: 1433 DC--TVITIAHRITSVIDSDMVLLLSHGLIEE 1462
+ T+ I+H I +D +L + +G + E
Sbjct: 497 EQGKTIFAISHDDHYFIHADRLLEMRNGQLSE 528
|
Length = 546 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 8e-12
Identities = 69/214 (32%), Positives = 102/214 (47%), Gaps = 36/214 (16%)
Query: 633 NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILG-EVPKISGTLKLCG---TKA---- 684
N + ++NL + G V + G G GK+++L + G E P G + + G T
Sbjct: 19 NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPT-EGQIFIDGEDVTHRSIQQ 77
Query: 685 ----YVAQS----PWIQSGKIEDNILFGKEM----DRERYNAVLDACSLEKDLEILSFGD 732
V QS P + G +N+ +G +M ER V +A L DL F D
Sbjct: 78 RDICMVFQSYALFPHMSLG---ENVGYGLKMLGVPKEERKQRVKEALEL-VDLA--GFED 131
Query: 733 QTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEV--LLGLL 790
+ V +SGGQ+QR+ +ARAL + LFD+P S +DA+ + +++ L
Sbjct: 132 RYV-----DQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQF 186
Query: 791 NSKTVLYVTH-QVEFLPAADLVLVIKDGKITQAG 823
N T LYVTH Q E +D V+V+ GKI Q G
Sbjct: 187 NI-TSLYVTHDQSEAFAVSDTVIVMNKGKIMQIG 219
|
Length = 351 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 69.1 bits (170), Expect = 9e-12
Identities = 55/229 (24%), Positives = 108/229 (47%), Gaps = 35/229 (15%)
Query: 1248 IDLRDLQVRYAPHMPFV-LRGISCTF-PGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQ 1305
+++R + R+ V +S + GE ++G G+GKSTL++ LF + +P +G+
Sbjct: 5 LEMRGITKRFPG---VVANDDVSLSVKKGEI-HALLGENGAGKSTLMKILFGLYQPDSGE 60
Query: 1306 ILIDGIDISLIGLHD-LRTRLSIIPQDPVMFEG-TVRSNV----DPLEEYTDEQIWEALD 1359
I +DG ++ + D +R + ++ Q ++ TV N+ +P +D
Sbjct: 61 IRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPS-------KGGLID 113
Query: 1360 KCQLGDEVRKK------EGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATA 1413
+ Q +++ D+KV + S+G++Q V + + L + ++L+LDE TA
Sbjct: 114 RRQARARIKELSERYGLPVDPDAKV----ADLSVGEQQRVEILKALYRGARLLILDEPTA 169
Query: 1414 SV-DTATDNLIQ--QSLRQHFSDCTVITIAHRITSVID-SDMVLLLSHG 1458
+ D L + + L T+I I H++ V+ +D V +L G
Sbjct: 170 VLTPQEADELFEILRRLAA--EGKTIIFITHKLKEVMAIADRVTVLRRG 216
|
Length = 501 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 9e-12
Identities = 57/210 (27%), Positives = 95/210 (45%), Gaps = 46/210 (21%)
Query: 650 AVCGTVGSGKSSLLSCILGEVPKISGTLKLCG------TK-----------AYVAQS--- 689
A+ G GSGK+SL++ I G G ++L G K YV Q
Sbjct: 28 ALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARL 87
Query: 690 -PWIQSGKIEDNILFG-KEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQ 747
P + N+ +G + R +++ ++ +E L+ LSGG+
Sbjct: 88 FPHY---TVRGNLRYGMWKSMRAQFDQLVALLGIEHLLD-----------RYPGTLSGGE 133
Query: 748 KQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVL--LGLLNSKT---VLYVTHQV 802
KQR+ I RAL ++ L D+P +++D +E+L L L + +LYV+H +
Sbjct: 134 KQRVAIGRALLTAPELLLMDEPLASLDLPRK----REILPYLERLRDEINIPILYVSHSL 189
Query: 803 -EFLPAADLVLVIKDGKITQAGKYTDVINS 831
E L AD V+V+++GK+ +G +V S
Sbjct: 190 DEVLRLADRVVVLENGKVKASGPLEEVWGS 219
|
Length = 352 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 9e-12
Identities = 50/160 (31%), Positives = 81/160 (50%), Gaps = 14/160 (8%)
Query: 1264 VLRGISCTF-PGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLR 1322
V+ +S GE G++G G+GK+T + +V P +G+IL+D DI+ + +H R
Sbjct: 19 VVNDVSLEVNSGEI-VGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMH-KR 76
Query: 1323 TRLSI--IPQDPVMFEG-TVRSNVDPLEEYTDEQIWEALDKC---QLGDEVRKKEGKLDS 1376
RL I +PQ+ +F TV N+ + E ++ + +A K L +E + DS
Sbjct: 77 ARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLR-DS 135
Query: 1377 KVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVD 1416
K + S G+R+ V + R L K ++LDE A VD
Sbjct: 136 K----AYSLSGGERRRVEIARALAANPKFILLDEPFAGVD 171
|
Length = 243 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 1e-11
Identities = 61/237 (25%), Positives = 108/237 (45%), Gaps = 23/237 (9%)
Query: 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1307
I++ DL RY L+G+S + P KT ++G G+GKSTL+ L I P G++
Sbjct: 5 IEVEDLHFRY-KDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVK 63
Query: 1308 IDGIDISLIGLHDLRTRLSIIPQDP--VMFEGTVRSNV--DPL-----EEYTDEQIWEAL 1358
+ G +++ +R+++ ++ QDP +F TV +V P+ ++ + ++ EAL
Sbjct: 64 VMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEAL 123
Query: 1359 DKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTA 1418
++ D K L S GQ++ V + VL +++LDE A +D
Sbjct: 124 KAVRMWDFRDKPPYHL-----------SYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPR 172
Query: 1419 TDNLIQQSL-RQHFSDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLENK 1473
+ + L R H TVI H + + +D V++L G + L +
Sbjct: 173 GQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLTDED 229
|
Length = 274 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.1 bits (161), Expect = 1e-11
Identities = 62/230 (26%), Positives = 103/230 (44%), Gaps = 42/230 (18%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCI-LGEVPKISGTLKLCGTKAYVAQSPWIQS 694
LK ++L+ G +++ G+ GSGKS+ L CI E P G++ + G + + Q
Sbjct: 21 LKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS-EGSIVVNGQTINLVRDKDGQL 79
Query: 695 GKIEDNILFGKEMDRERYNAVLDACSL-----------EKDLEILSFG------------ 731
+ N L + R R V +L E +++L
Sbjct: 80 KVADKNQL---RLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYL 136
Query: 732 -----DQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVL 786
D+ G+ ++LSGGQ+QR+ IARAL + ++ LFD+P SA+D L EVL
Sbjct: 137 AKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALD----PELVGEVL 192
Query: 787 LGLLN----SKTVLYVTHQVEFLP-AADLVLVIKDGKITQAGKYTDVINS 831
+ KT++ VTH++ F + V+ + GKI + G + +
Sbjct: 193 RIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFGN 242
|
Length = 257 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 1e-11
Identities = 62/222 (27%), Positives = 95/222 (42%), Gaps = 40/222 (18%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQS---PWI 692
L +N V G +VA+ G GSGKS++L ++ P G +++ G + Y P +
Sbjct: 16 LDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLV 75
Query: 693 QS---------GKIE---------------DNILFGKEMDRERYNAVLDACSLEKDLEIL 728
+ KI DN+ + A + ++E L+++
Sbjct: 76 PADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMEL-LDMV 134
Query: 729 SFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVL-- 786
D+ LSGGQ+QR+ IARAL + LFD+ SA+D L EVL
Sbjct: 135 GLADK--ADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALD----PELVGEVLNV 188
Query: 787 ---LGLLNSKTVLYVTHQVEFL-PAADLVLVIKDGKITQAGK 824
L + T+L VTH++ F AD V G+I + GK
Sbjct: 189 IRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGK 230
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.5 bits (162), Expect = 1e-11
Identities = 59/194 (30%), Positives = 97/194 (50%), Gaps = 32/194 (16%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSL---LSCILGEVP--KISGTLKLCGTK------- 683
LK+INL + A+ G G GKS+ L+ ++ VP K++G + G+
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87
Query: 684 --------AYVAQ--SPWIQSGKIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQ 733
V Q +P+ QS I DN+ +G + + L EK L+ ++ D+
Sbjct: 88 LVELRKNIGMVFQKGNPFPQS--IFDNVAYGPRIHGTKNKKKLQEIV-EKSLKDVALWDE 144
Query: 734 TVVGER----GINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL 789
V +R ++LSGGQ+QR+ IARAL + D+ L D+P SA+D + +E++L L
Sbjct: 145 --VKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDP-VSTRKIEELILKL 201
Query: 790 LNSKTVLYVTHQVE 803
T++ VTH ++
Sbjct: 202 KEKYTIVIVTHNMQ 215
|
Length = 259 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 1e-11
Identities = 58/203 (28%), Positives = 92/203 (45%), Gaps = 22/203 (10%)
Query: 1264 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRT 1323
+ IS T P G++G G+GKSTL++ + I+ P +G+I+ DG + DL
Sbjct: 15 AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWT---RKDLHK 71
Query: 1324 RLSIIPQDPVMFEGTVRSN---VDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTE 1380
S+I P+ T R N L D +I E L+ L + +KK +
Sbjct: 72 IGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQ------- 124
Query: 1381 NGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIA 1440
+S+G +Q + + LL K+L+LDE T +D + Q LR+ I
Sbjct: 125 ----FSLGMKQRLGIAIALLNHPKLLILDEPTNGLDP----IGIQELRELIRSFPEQGIT 176
Query: 1441 HRITSVIDSDMVLLLSH-GLIEE 1462
++S I S++ L H G+I E
Sbjct: 177 VILSSHILSEVQQLADHIGIISE 199
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 1e-11
Identities = 44/168 (26%), Positives = 78/168 (46%), Gaps = 12/168 (7%)
Query: 1264 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRT 1323
+ G+S T + + G GSGK+TL++ L + P AG++L++G + R
Sbjct: 15 LFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARG 74
Query: 1324 RLSIIPQDPVMFEGTVRSNVDPL-EEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENG 1382
L + + +V N+ +++DEQ+ EAL + L + +L
Sbjct: 75 LLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQL-------- 126
Query: 1383 ENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQH 1430
S GQ++ V L R+LL R + +LDE T ++D A +++ H
Sbjct: 127 ---SAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGH 171
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 64.5 bits (158), Expect = 2e-11
Identities = 56/199 (28%), Positives = 85/199 (42%), Gaps = 17/199 (8%)
Query: 632 HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPW 691
L DI+L V G G G+GK++ + ILG + SG + G
Sbjct: 12 KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEAL 71
Query: 692 IQSGK-IEDNILFGKEMDRE--RYNAVLDACSLEKDLEILSFGDQTVVGERGIN------ 742
+ G IE + RE R A L ++ E+L VVG +
Sbjct: 72 RRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLD-----VVGLKDSAKKKVKG 126
Query: 743 LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNS-KTVLYVTHQ 801
S G KQR+ IA AL + D+ + D+P + +D G +E++L L + TVL +H
Sbjct: 127 FSLGMKQRLGIALALLGNPDLLILDEPTNGLDP-DGIKELRELILSLRDQGITVLISSHL 185
Query: 802 V-EFLPAADLVLVIKDGKI 819
+ E AD + +I GK+
Sbjct: 186 LSEIQKVADRIGIINKGKL 204
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 2e-11
Identities = 57/219 (26%), Positives = 98/219 (44%), Gaps = 28/219 (12%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK---------- 683
+ D++L+V G V + G G+GK++ I+G V SG + L
Sbjct: 18 KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRA 77
Query: 684 ----AYVAQSPWIQSG-KIEDNILFGKEM---DRERYNAVLDACSLEKDLEILSFGDQTV 735
Y+ Q I +EDNI+ E+ D ++ + +L ++ I D
Sbjct: 78 RLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDS-- 135
Query: 736 VGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKT- 794
+ +LSGG+++R++IARAL + L D+PF+ VD + + ++ L +
Sbjct: 136 ---KAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQR--IIKHLKDRGI 190
Query: 795 -VLYVTHQV-EFLPAADLVLVIKDGKITQAGKYTDVINS 831
VL H V E L D +I DGK+ G +++N+
Sbjct: 191 GVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNN 229
|
Length = 243 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 65.6 bits (161), Expect = 2e-11
Identities = 56/220 (25%), Positives = 95/220 (43%), Gaps = 36/220 (16%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG---TK--------- 683
+ ++L V G V + G G+GK++ I+G V SG + L G TK
Sbjct: 16 VNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARL 75
Query: 684 --AYVAQSPWIQSG-KIEDNIL-------FGKEMDRERYNAVLDACSLEKDLEILSFGDQ 733
Y+ Q I +E+NIL K+ E+ +L+ + I
Sbjct: 76 GIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLE------EFHITHLRKS 129
Query: 734 TVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSK 793
+ +LSGG+++R++IARAL + L D+PF+ VD + ++++ L +
Sbjct: 130 -----KASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDI-QKIIKILKDRG 183
Query: 794 T-VLYVTHQV-EFLPAADLVLVIKDGKITQAGKYTDVINS 831
VL H V E L D +I +GK+ G ++ +
Sbjct: 184 IGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAAN 223
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 2e-11
Identities = 52/163 (31%), Positives = 76/163 (46%), Gaps = 22/163 (13%)
Query: 672 KISGTLKLCGTKAYVAQSPWIQSGK--IEDNILFG-------KEMDRERYNAVLDACSLE 722
KI +L + V Q P Q K IE +I+FG K ++ L+ L+
Sbjct: 107 KIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLD 166
Query: 723 KD-LEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHL 781
LE FG LSGGQK+R+ IA L +I +FD+P + +D +
Sbjct: 167 DSYLERSPFG-----------LSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEM 215
Query: 782 FKEVLLGLLNSKTVLYVTHQVE-FLPAADLVLVIKDGKITQAG 823
+ +L N+KTV +TH +E L AD V+V+ GKI + G
Sbjct: 216 MQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTG 258
|
Length = 320 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.8 bits (160), Expect = 2e-11
Identities = 57/213 (26%), Positives = 98/213 (46%), Gaps = 28/213 (13%)
Query: 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1307
I ++DL Y + GIS K T I+G +G GKST I+TL RI E G +
Sbjct: 8 IKVKDLSFYYNTSK--AIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISE-LEGPVK 64
Query: 1308 IDG--------IDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNV---------DPLEEYT 1350
++G I I ++ LR ++ ++ Q P F ++ NV P +
Sbjct: 65 VEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADL- 123
Query: 1351 DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDE 1410
DE + AL L EV+ K+ ++ S GQ+Q +C+ R L + K+L++DE
Sbjct: 124 DEIVESALKGAALWQEVK-------DKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDE 176
Query: 1411 ATASVDTATDNLIQQSLRQHFSDCTVITIAHRI 1443
+++D +++ + S+ T+ + H +
Sbjct: 177 PCSALDPIATMKVEELIHSLRSELTIAIVTHNM 209
|
Length = 259 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 2e-11
Identities = 60/221 (27%), Positives = 92/221 (41%), Gaps = 55/221 (24%)
Query: 635 TLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILG--EVPKISGTLKLCGTKAYVAQSPWI 692
LK ++L + G VA+ G+ GSGKS+LL +LG + P SG + G ++ S
Sbjct: 20 VLKGVSLSIGKGEIVAIVGSSGSGKSTLLH-LLGGLDNPT-SGEVLFNG-QSLSKLS--- 73
Query: 693 QSGKIED--NILFG----------------------------KEMDRERYNAVLDACSLE 722
S + N G + +ER +L+ LE
Sbjct: 74 -SNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLE 132
Query: 723 KDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLF 782
+ R LSGG++QR+ IARAL + L D+P +D + +F
Sbjct: 133 HRIN-----------HRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIF 181
Query: 783 KEVLLGLLNSK---TVLYVTHQVEFLPAADLVLVIKDGKIT 820
L+ LN + + L VTH +E D VL +KDG++
Sbjct: 182 D--LMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.4 bits (159), Expect = 2e-11
Identities = 57/244 (23%), Positives = 106/244 (43%), Gaps = 24/244 (9%)
Query: 1244 SHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVE--- 1300
+ +I + +L + Y L+ +S P T ++G +G GKST I+ L R+ +
Sbjct: 9 AQPQIKVENLNLWYGEKQ--ALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIK 66
Query: 1301 --PAAGQILIDGIDISLIGLH--DLRTRLSIIPQDPVMFEGTVRSNV-------DPLEEY 1349
G++ I+G DI + +LR + ++ Q P F ++ NV ++
Sbjct: 67 NCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKD 126
Query: 1350 TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLD 1409
D + AL L DE ++ + S GQ+Q +C+ R L + KI++ D
Sbjct: 127 LDGVVENALRSAALWDET-------SDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFD 179
Query: 1410 EATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRK 1468
E T+++D + I+ + D T++ + H + SD G + E+ R+
Sbjct: 180 EPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQ 239
Query: 1469 LLEN 1472
+ N
Sbjct: 240 IFHN 243
|
Length = 258 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 68.4 bits (167), Expect = 3e-11
Identities = 59/226 (26%), Positives = 105/226 (46%), Gaps = 15/226 (6%)
Query: 1257 YAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLI 1316
++ ++ VL+ IS + + G TGSGKS+L+ + +EP+ G+I G
Sbjct: 434 FSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG------ 487
Query: 1317 GLHDLRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDS 1376
R+S PQ + GT++ N+ Y + + + CQL +++ K +
Sbjct: 488 -------RISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKT 540
Query: 1377 KVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQS-LRQHFSDCT 1435
+ E G S GQR + L R + K + +LD +D T+ I +S L + S+ T
Sbjct: 541 VLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKT 600
Query: 1436 VITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSFSQLV 1481
I + ++ + +D +LLL G+ Y + + L+ K FS L+
Sbjct: 601 RILVTSKLEHLKKADKILLLHEGVCYFYGTFSE-LQAKRPDFSSLL 645
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.4 bits (159), Expect = 3e-11
Identities = 54/190 (28%), Positives = 87/190 (45%), Gaps = 24/190 (12%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCI-----LGEVPKISGTLKLCGTKAY----- 685
L DINL ++ A+ G G GKS+ L C+ L KI G + L G Y
Sbjct: 20 LNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVD 79
Query: 686 ----------VAQSPWIQSGKIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQTV 735
V Q P I DN+ +G + + LD +E L+ + D+
Sbjct: 80 VVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKI-VEWALKKAALWDEVK 138
Query: 736 --VGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSK 793
+ + + LSGGQ+QR+ IAR + D+ L D+P SA+D + +++++ L
Sbjct: 139 DDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDP-ISTLKIEDLMVELKKEY 197
Query: 794 TVLYVTHQVE 803
T++ VTH ++
Sbjct: 198 TIVIVTHNMQ 207
|
Length = 251 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 3e-11
Identities = 87/404 (21%), Positives = 159/404 (39%), Gaps = 39/404 (9%)
Query: 440 LGIASVAAFFGTVIFMLV-----NVPLSTVQEKFQNELMKSKDERMKATSEILRNMRILK 494
L S F TV++++V V ++ V + +++D+ IL + L
Sbjct: 142 LAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMA-AARETEDKLQNDYQTILEGRKELT 200
Query: 495 LQGWELKFLSKTIDLRKSESGWLKR---CLYTSSITSFVFWCAPTFVSVITFGTCILLKV 551
L +++ R + V W + +I + L +
Sbjct: 201 LNRERAEYVHNN---LYIPDAQEYRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLALSL 257
Query: 552 PLESGKVLSAIATFRLLQILIYKLP-----AIISMTIQTKVSLQRIASFFCLDELQPDLV 606
S V + I L +L + P I+ + +V+ +IA L + D
Sbjct: 258 GWASTNVAATIV----LVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKL-ELAPYKADFP 312
Query: 607 EKQPRGSSETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCI 666
Q +T +E+ + F++ + + INL + G V + G GSGKS+L +
Sbjct: 313 RPQAFPDWKT-LELRNVRFAYQ--DNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLL 369
Query: 667 LGEVPKISGTLKLCGTKAYVAQSP----WIQSGKIEDNILFGKEMDRERYNAVLDACSLE 722
G SG + L G A+ + S D LF + + E + E
Sbjct: 370 TGLYQPQSGEILLDGKPV-SAEQLEDYRKLFSAVFSDYHLFDQLLGPEGKASPQLI---E 425
Query: 723 KDLEILSFGDQTVVGERGI---NLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGS 779
K L+ L +T + + LS GQK+R+ + AL ++ DI + D+ + D
Sbjct: 426 KWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAF-R 484
Query: 780 HLFKEVLLGLLNS--KTVLYVTHQVEFLPAADLVLVIKDGKITQ 821
F +VLL LL KT+ ++H + AD +L +++G++++
Sbjct: 485 REFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSE 528
|
Length = 546 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 3e-11
Identities = 52/210 (24%), Positives = 87/210 (41%), Gaps = 28/210 (13%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPK---ISGTLKLCGTK--------- 683
L D++L V G +A+ G+ GSGK++LL I G V SG + G
Sbjct: 23 LNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKC 82
Query: 684 -AYVAQSP-WIQSGKIEDNILF-----GKEMDRERYNAVLDACSLEKDLEILSFGDQTVV 736
AYV Q + + + + + + L +DL + G V
Sbjct: 83 VAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVK 142
Query: 737 GERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNS-KTV 795
G +SGG+++R+ IA L D + + D+P S +D+ T + L L + V
Sbjct: 143 G-----ISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFT-ALNLVSTLSQLARRNRIV 196
Query: 796 LYVTHQ--VEFLPAADLVLVIKDGKITQAG 823
+ HQ + D +L++ G+I +G
Sbjct: 197 ILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.3 bits (161), Expect = 3e-11
Identities = 70/293 (23%), Positives = 125/293 (42%), Gaps = 35/293 (11%)
Query: 1195 LNNLQAMLIWLACQMENKIISVERIFQYTCIPSEPPLEIEE---------SRPNHSWPSH 1245
LN L A I+ Q NK +R F + +P + E+++ +
Sbjct: 22 LNELDAKAIYDEFQKLNK---YQRAFAWLKLPKQKKAELKQFLNKKKTQVDLLKEDFNHA 78
Query: 1246 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRI---VEPA 1302
++R+ Y VL ++ K T +G +G GKST ++ L ++ +E
Sbjct: 79 NVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGT 138
Query: 1303 A--GQILIDGIDI--SLIGLHDLRTRLSIIPQDPVMFEGTVRSNV--DPLEE-YTDEQIW 1355
+ G+I G + I +LRTR+ ++ Q P FE ++ NV P D +I
Sbjct: 139 SHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKIL 198
Query: 1356 E-----ALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDE 1410
E +L L DEV+ + + G S GQ+Q +C+ R + ++L++DE
Sbjct: 199 EKIVEKSLKSAALWDEVK-------DDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDE 251
Query: 1411 ATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGLIEE 1462
T+++D I++ + + ++I + H + SD + G IEE
Sbjct: 252 PTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEE 304
|
Length = 329 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 3e-11
Identities = 58/216 (26%), Positives = 98/216 (45%), Gaps = 45/216 (20%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK------------ 683
L+ ++L+V G V G G GK++LL ++G +P SG+++L G
Sbjct: 16 LRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARA 75
Query: 684 --AYVAQSPWIQSG-KIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGD--QTVVGE 738
AYV Q I +E+N+L G R + D EI + ++G
Sbjct: 76 GIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPD--------EIYELFPVLKEMLGR 127
Query: 739 RGINLSGGQKQRIQIARALYQDADIYLFDDPF-----SAVDAHTGSHLFKEV--LLGLLN 791
RG +LSGGQ+Q++ IARAL + L D+P S + K++ ++ L
Sbjct: 128 RGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSII---------KDIGRVIRRLR 178
Query: 792 SK---TVLYVTHQVEF-LPAADLVLVIKDGKITQAG 823
++ +L V ++F AD V++ G++ +G
Sbjct: 179 AEGGMAILLVEQYLDFARELADRYYVMERGRVVASG 214
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 64.5 bits (158), Expect = 3e-11
Identities = 47/164 (28%), Positives = 75/164 (45%), Gaps = 34/164 (20%)
Query: 1264 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRT 1323
+LRG+S P + T ++GR G GK+TL++TL ++ +G I +DG DI+ + H+ R
Sbjct: 15 ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHE-RA 73
Query: 1324 RLSI--IPQDPVMFEG-TVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGK------- 1373
R I +PQ +F TV N+ G + +
Sbjct: 74 RAGIAYVPQGREIFPRLTVEENL------------------LTGLAALPRRSRKIPDEIY 115
Query: 1374 -----LDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEAT 1412
L + G + S GQ+Q + + R L+ R K+L+LDE T
Sbjct: 116 ELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPT 159
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 3e-11
Identities = 72/216 (33%), Positives = 103/216 (47%), Gaps = 42/216 (19%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSL---LSCIL----GEVPKISGT---------LKL 679
LK IN K G VA+ G G+GKS+L + IL GEV I G L++
Sbjct: 18 LKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEV-LIKGEPIKYDKKSLLEV 76
Query: 680 CGTKAYVAQSPWIQ--SGKIEDNILFG-------KEMDRERYNAVLDACSLEKDLEILSF 730
T V Q+P Q + +E+++ FG KE +R L A +E F
Sbjct: 77 RKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGME------GF 130
Query: 731 GDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL 790
++ +LSGGQK+R+ IA L +I + D+P S +D S + K LL L
Sbjct: 131 ENKP-----PHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMK--LLYDL 183
Query: 791 NSK--TVLYVTHQVEFLPA-ADLVLVIKDGKITQAG 823
N + T++ TH V+ +P AD V V+ DGKI + G
Sbjct: 184 NKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEG 219
|
Length = 275 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 3e-11
Identities = 70/292 (23%), Positives = 115/292 (39%), Gaps = 71/292 (24%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSP----- 690
LK +NL V+ G A+ G G+GKS+L+ + G GT+ + Y
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINN-INYNKLDHKLAAQ 79
Query: 691 -----------WIQSGKIEDNILFG---------------KEMDRERYNAVLDACSLEKD 724
I + +N+ G +EM R R +L L+ D
Sbjct: 80 LGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREM-RVRAAMMLLRVGLKVD 138
Query: 725 LEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKE 784
L+ V NLS KQ ++IA+ L DA + + D+P S++ +LF
Sbjct: 139 LDEK-------VA----NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLF-- 185
Query: 785 VLLGLLNS--KTVLYVTHQV-EFLPAADLVLVIKDGKITQAGKYTDVINSGTDFMELVDA 841
+++ L ++Y++H++ E D V+KDG +G +DV N + +
Sbjct: 186 LIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSNDDIVRLMV--- 242
Query: 842 HKQALSTLDSIEGRPLSEKGSANGENDGTSATDGVVKEVEN------KEVQN 887
GR L + +A EN A + V EV N K+V++
Sbjct: 243 ------------GRELQNRFNAMKENVSNLAHE-TVFEVRNVTSRDRKKVRD 281
|
Length = 510 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 4e-11
Identities = 51/202 (25%), Positives = 89/202 (44%), Gaps = 24/202 (11%)
Query: 1252 DLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDG- 1310
L V +P I E TGI G +G+GKSTL++ + + +P G I+++G
Sbjct: 1 MLCVDIEKRLPDFTLKIDFDLNEEV-TGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGT 59
Query: 1311 --IDISL-IGLHDLRTRLSIIPQDPVMFEG-TVRSNVD---PLEEYTDEQIW--EALDKC 1361
D I L + ++ ++ Q +F VR N+ + +++I E LD
Sbjct: 60 VLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLL 119
Query: 1362 QLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDN 1421
L + + +L S G++Q V L R L + ++L+LDE +++D A
Sbjct: 120 GLDHLLNRYPAQL-----------SGGEKQRVALARALAAQPELLLLDEPFSALDRALRL 168
Query: 1422 LIQQSLRQHFSD--CTVITIAH 1441
+ L+Q + VI + H
Sbjct: 169 QLLPELKQIKKNLNIPVIFVTH 190
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 4e-11
Identities = 63/233 (27%), Positives = 113/233 (48%), Gaps = 29/233 (12%)
Query: 1264 VLRGISCTF-PGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLR 1322
L G+S GE T ++G +G GK+TL++ + P +G+IL+DG DI+ + H +
Sbjct: 15 ALDGVSLDIKEGEFFT-LLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPH--K 71
Query: 1323 TRLSIIPQDPVMFEG-TVRSNVD-PL------EEYTDEQIWEALDKCQLGDEVRKKEGKL 1374
++ + Q+ +F TV N+ L + E++ EALD QL +K +L
Sbjct: 72 RPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQL 131
Query: 1375 DSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLR--QHFS 1432
S GQ+Q V + R L+ K+L+LDE ++D +Q L+ Q
Sbjct: 132 -----------SGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKEL 180
Query: 1433 DCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLENKSSSFSQLVAEY 1484
T + + H + SD + +++ G I++ +P ++ E ++ F VA++
Sbjct: 181 GITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEEPANRF---VADF 230
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 4e-11
Identities = 59/222 (26%), Positives = 104/222 (46%), Gaps = 29/222 (13%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAY-------- 685
L ++L V G V + G G+GK++LL I G + +GT+ + G
Sbjct: 17 TVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAAS 76
Query: 686 --VAQSPWIQSGKIEDNILFGKEMDRERYNAVL------DACSLEKDLE---ILSFGDQT 734
VA P S E ++ EM R + + D ++E+ +E + F D+
Sbjct: 77 RRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRP 136
Query: 735 VVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKT 794
V +LSGG++QR+ +ARAL Q + L D+P +++D + + V + + KT
Sbjct: 137 VT-----SLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKT 191
Query: 795 VLYVTHQVEFLPAA---DLVLVIKDGKITQAGKYTDVINSGT 833
+ H ++ AA D ++++ DG++ AG DV+ + T
Sbjct: 192 AVAAIHDLDL--AARYCDELVLLADGRVRAAGPPADVLTADT 231
|
Length = 402 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 4e-11
Identities = 60/211 (28%), Positives = 91/211 (43%), Gaps = 43/211 (20%)
Query: 641 LKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKA--------YVAQS--- 689
L G + + G G+GK++LL ILG +P GT+K+ G YV Q
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEF 60
Query: 690 PWIQSGKIEDNILFGKE-----MDRER---YNAVLDACSLEKDLEILSFGDQTVVGERGI 741
W + ++ G+ + R + AV DA + + + D+ V GE
Sbjct: 61 AWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDAL---RRVGLTELADRPV-GE--- 113
Query: 742 NLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNS-----KTVL 796
LSGGQ+QR+ +ARAL + L D+PF+ +D T +E+L L +L
Sbjct: 114 -LSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPT-----QELLTELFIELAGAGTAIL 167
Query: 797 YVTHQ-VEFLPAADLVL-----VIKDGKITQ 821
TH + + D V+ VI DG Q
Sbjct: 168 MTTHDLAQAMATCDRVVLLNGRVIADGTPQQ 198
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 4e-11
Identities = 57/203 (28%), Positives = 99/203 (48%), Gaps = 23/203 (11%)
Query: 1264 VLRGISCTF-PGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLR 1322
+L IS + GE K I G +G GKSTL++ + ++ P +G +L +G DIS + R
Sbjct: 22 ILNNISFSLRAGEFKL-ITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYR 80
Query: 1323 TRLSIIPQDPVMFEGTVRSNVD-PLE---EYTDEQIWEA-LDKCQLGDEVRKKEGKLDSK 1377
++S Q P +F TV N+ P + + D I+ L++ L D + L
Sbjct: 81 QQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTI------LTKN 134
Query: 1378 VTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVD----TATDNLIQQSLRQHFSD 1433
+ E S G++Q + L R L K+L+LDE T+++D + +I + +R+ +
Sbjct: 135 IAE----LSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQ--N 188
Query: 1434 CTVITIAHRITSVIDSDMVLLLS 1456
V+ + H + +D V+ L
Sbjct: 189 IAVLWVTHDKDEINHADKVITLQ 211
|
Length = 225 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 4e-11
Identities = 53/218 (24%), Positives = 114/218 (52%), Gaps = 23/218 (10%)
Query: 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFR---IVEPAA- 1303
I L+++ + Y ++ + C P K T ++G +G GKST++++L R ++E +
Sbjct: 14 ISLQNVTISYGTFE--AVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSL 71
Query: 1304 -GQILIDGIDI--SLIGLHDLRTRLSIIPQDPVMFEGTVRSNVD---PLEEYT---DEQI 1354
G++L DG D+ + ++R R+ ++ Q P F ++ N+ + YT DE +
Sbjct: 72 KGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELV 131
Query: 1355 WEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATAS 1414
+L K + DE + K+ E+G + S GQ+Q +C+ R + +++++DE ++
Sbjct: 132 ERSLRKAAVWDECK-------DKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSA 184
Query: 1415 VDTATDNLIQQSLRQHFSDCTVITIAHRITSVID-SDM 1451
+D + I++++ + + T++ + H + + SDM
Sbjct: 185 LDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDM 222
|
Length = 269 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 5e-11
Identities = 56/220 (25%), Positives = 94/220 (42%), Gaps = 41/220 (18%)
Query: 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1307
I L +L + Y +L +S T ++ G+VGR G+GKSTL++ L +EP +G++
Sbjct: 4 ITLENLSLAYGDRP--LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVT 61
Query: 1308 IDGIDISLIGLHDLRTRLSIIPQDPVMFEG-TVRSNV--------DPLEEYTDEQIWEAL 1358
GL R+ + Q+P + TV V + L E + A
Sbjct: 62 RPK------GL-----RVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLAD 110
Query: 1359 DKCQLGDEVRKKEGKLDSKVTE------------NGENWSM-----GQRQLVCLGRVLLK 1401
+L E+ +LD E E+ + G R+ V L R LL+
Sbjct: 111 PDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLE 170
Query: 1402 RRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAH 1441
+L+LDE T +D + ++ L+++ TVI ++H
Sbjct: 171 EPDLLLLDEPTNHLDLESIEWLEDYLKRY--PGTVIVVSH 208
|
Length = 530 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 5e-11
Identities = 63/235 (26%), Positives = 103/235 (43%), Gaps = 41/235 (17%)
Query: 624 NFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG-- 681
N S + L D++L + G ++ G G+GKS+LLS + + K SG + + G
Sbjct: 6 NVSKSYGTK-VVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLE 64
Query: 682 -----------TKAYVAQSPWIQSG-KIEDNILFGK---------EMDRERYNAVLDACS 720
+ + Q I S + D + FG+ + DR N ++
Sbjct: 65 LTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLH 124
Query: 721 LEKDLEILSFGDQTVVGERGIN-LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGS 779
LE DL +R ++ LSGGQ+QR IA L QD D L D+P + +D
Sbjct: 125 LE-DLS-----------DRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSV 172
Query: 780 HLFK--EVLLGLLNSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYTDVINS 831
+ K L L KT++ V H + F +D ++ +K+GK+ + G ++I
Sbjct: 173 QIMKILRRLADELG-KTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQP 226
|
Length = 252 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.0 bits (162), Expect = 5e-11
Identities = 67/246 (27%), Positives = 112/246 (45%), Gaps = 56/246 (22%)
Query: 1248 IDLRDLQVRYAPHMPFV--LRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQ 1305
I+L+++ + + L +S P + G++G +G+GKSTLI+ + + P +G+
Sbjct: 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGR 61
Query: 1306 ILIDGIDISLIGLHDLR-TRLSI--IPQDPVMFEG-------TVRSNVD-PLEEYTDEQI 1354
+L+DG D++ + +LR R I I F+ TV NV PLE
Sbjct: 62 VLVDGQDLTALSEKELRKARRQIGMI------FQHFNLLSSRTVFDNVALPLE------- 108
Query: 1355 WEALDKCQLGDEVRKKEGKLDSKVTENGE-------------NWSMGQRQLVCLGRVLLK 1401
L K E + ++VTE E S GQ+Q V + R L
Sbjct: 109 ---LAG------TPKAE--IKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALAS 157
Query: 1402 RRKILMLDEATASVDTATDNLIQQSLRQHFSD--CTVITIAHRITSVIDS--DMVLLLSH 1457
K+L+ DEAT+++D AT I + L+ + T++ I H + V+ D V ++
Sbjct: 158 NPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEM-DVVKRICDRVAVIDA 216
Query: 1458 G-LIEE 1462
G L+E+
Sbjct: 217 GRLVEQ 222
|
Length = 343 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.7 bits (157), Expect = 5e-11
Identities = 55/203 (27%), Positives = 98/203 (48%), Gaps = 30/203 (14%)
Query: 1264 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDG--------IDISL 1315
+L G+S K T I+G +G GKST ++ L R+ E ++ ++G I
Sbjct: 22 ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE-LESEVRVEGRVEFFNQNIYERR 80
Query: 1316 IGLHDLRTRLSIIPQDPVMFEGTVRSNV---------DPLEEYTDEQIWEALDKCQLGDE 1366
+ L+ LR ++S++ P +F +V NV P E D+ + AL L DE
Sbjct: 81 VNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLE-IDDIVESALKDADLWDE 139
Query: 1367 VRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQ-- 1424
++ K+ ++ + S GQ+Q +C+ R L + K+L++DE +D ++
Sbjct: 140 IK-------HKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESL 192
Query: 1425 -QSLRQHFSDCTVITIAHRITSV 1446
QSLR S+ T++ ++H + V
Sbjct: 193 IQSLRLR-SELTMVIVSHNLHQV 214
|
Length = 261 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.4 bits (163), Expect = 6e-11
Identities = 52/223 (23%), Positives = 95/223 (42%), Gaps = 43/223 (19%)
Query: 631 SHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSP 690
S ++D++ V G + + G VG+G++ L + G P SG + L G K +SP
Sbjct: 270 SGGGKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDG-KPVRIRSP 328
Query: 691 --WIQSG-----------------KIEDNILFGKEMDRERYNAVLD-------ACSLEKD 724
I++G I +NI + R ++D A +
Sbjct: 329 RDAIKAGIAYVPEDRKSEGLVLDMSIAENITLAS-LRRFSRRGLIDRRKERALAERYIRR 387
Query: 725 LEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKE 784
L I + + +G LSGG +Q++ +AR L D + + D+P +D K
Sbjct: 388 LRIKTPSPEQPIG----TLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGA-----KA 438
Query: 785 VLLGLLNS-----KTVLYVTHQV-EFLPAADLVLVIKDGKITQ 821
+ L+ K +L ++ ++ E L +D +LV+++G+I
Sbjct: 439 EIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVG 481
|
Length = 500 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 6e-11
Identities = 62/231 (26%), Positives = 109/231 (47%), Gaps = 33/231 (14%)
Query: 617 AIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCI-LGEVPKISG 675
+I++ N + L DI L G + + G G+GKSSLL + L E+P+ SG
Sbjct: 2 SIQLNGINCFYGAHQ---ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPR-SG 57
Query: 676 TLKLCGTKAYVAQSPWIQSG-KIEDNILFGKEMDRERYN-----AVLD------------ 717
TL + G +++P ++ ++ N+ M ++YN V
Sbjct: 58 TLNIAGNHFDFSKTPSDKAIRELRRNV----GMVFQQYNLWPHLTVQQNLIEAPCRVLGL 113
Query: 718 --ACSLEKDLEILSFGDQTVVGER-GINLSGGQKQRIQIARALYQDADIYLFDDPFSAVD 774
+L + ++L +R ++LSGGQ+QR+ IARAL + + LFD+P +A+D
Sbjct: 114 SKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALD 173
Query: 775 AHTGSHLFKEVLLGLLNSK-TVLYVTHQVEFL-PAADLVLVIKDGKITQAG 823
+ + ++ L + T + VTH+VE A V+ +++G I + G
Sbjct: 174 PEITAQIVS-IIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQG 223
|
Length = 242 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 6e-11
Identities = 56/195 (28%), Positives = 94/195 (48%), Gaps = 27/195 (13%)
Query: 1264 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRT 1323
+L +S TFP K TG++G GSGKSTL++ L R P+ G+IL+D +
Sbjct: 26 LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFAR 85
Query: 1324 RLSIIPQDPVMFEG-TVRSNVDPLEEYTDEQIWE-ALDKCQLGDEVRKKEGKLDSKVTEN 1381
+++ +PQ EG TVR V + Y W AL + G R+ K++ ++
Sbjct: 86 KVAYLPQQLPAAEGMTVRELV-AIGRYP----WHGALGR--FGAADRE---KVEEAISLV 135
Query: 1382 G---------ENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATD----NLIQQSLR 1428
G ++ S G+RQ + ++ + + L+LDE T+++D A L+ + +
Sbjct: 136 GLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQ 195
Query: 1429 QHFSDCTVITIAHRI 1443
+ TVI + H I
Sbjct: 196 ER--GLTVIAVLHDI 208
|
Length = 265 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 7e-11
Identities = 56/194 (28%), Positives = 88/194 (45%), Gaps = 32/194 (16%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCI-----LGEVPKISGTLKLCGTKAY----- 685
L DI+L+ A+ G G GKS+ L C+ L ++ G + L G Y
Sbjct: 22 LHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81
Query: 686 ----------VAQSPWIQSGKIEDNILFGKEMDRERYNAVLD----ACSLEKDLEILSFG 731
V Q P I +N+ +G R N V D A +E+ L +
Sbjct: 82 VVELRRRVGMVFQKPNPFPKSIFENVAYGL-----RVNGVKDKAYLAERVERSLRHAALW 136
Query: 732 DQTV--VGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL 789
D+ + E + LSGGQ+QR+ IARAL + ++ L D+P SA+D + +E++ L
Sbjct: 137 DEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDP-IATQKIEELIHEL 195
Query: 790 LNSKTVLYVTHQVE 803
T++ VTH ++
Sbjct: 196 KARYTIIIVTHNMQ 209
|
Length = 253 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 7e-11
Identities = 49/192 (25%), Positives = 80/192 (41%), Gaps = 35/192 (18%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK------------ 683
LK +N G +A+ G G+GKS+LL + G + SG + + G
Sbjct: 8 LKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERR 67
Query: 684 ---AYVAQSPWIQ--SGKIEDNILFG------KEMDRERYNAVLDACSLEKDLEILSFGD 732
V Q P Q + ++ ++ FG E + ER V +A + + +
Sbjct: 68 QRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVER--RVREALTA---VGASGLRE 122
Query: 733 QTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNS 792
+ LSGG+K+R+ IA A+ D+ L D+P + +D G +L L
Sbjct: 123 RPTH-----CLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDP-AGREQMLAILRRLRAE 176
Query: 793 -KTVLYVTHQVE 803
TV+ TH V+
Sbjct: 177 GMTVVISTHDVD 188
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.3 bits (156), Expect = 7e-11
Identities = 51/222 (22%), Positives = 102/222 (45%), Gaps = 26/222 (11%)
Query: 1239 NHSWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRI 1298
P+ K ++ L Y + L+ I+ ++ T ++G +G GKST ++ R+
Sbjct: 8 GDVSPTQQKSEVNKLNFYYGGYQ--ALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRM 65
Query: 1299 --VEPA---AGQILIDGIDISLIGLH----DLRTRLSIIPQDPVMFEGTVRSNVD----- 1344
+ P G+I++ +++++ ++R R+S++ Q P F ++ NV
Sbjct: 66 HDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRI 125
Query: 1345 ---PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLK 1401
+E++ AL L DEV+ + G L N S GQ+Q +C+ R L
Sbjct: 126 RGVKRRSILEERVENALRNAALWDEVKDRLGDL-------AFNLSGGQQQRLCIARALAT 178
Query: 1402 RRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRI 1443
+IL+ DE T+++D I++ + + T++ + H +
Sbjct: 179 DPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNM 220
|
Length = 265 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 7e-11
Identities = 65/242 (26%), Positives = 106/242 (43%), Gaps = 34/242 (14%)
Query: 613 SSETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSS---LLSCILGE 669
+ +E +F++ S P L DI+ + G A+ G GSGKS+ L++ +L
Sbjct: 1 MKDNIVEFKHVSFTYP-DSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLP 59
Query: 670 VPKISGTLKLCGTK-------------AYVAQSPWIQ--SGKIEDNILFGKEMDR----- 709
+ + + G V Q+P Q + D++ FG E +R
Sbjct: 60 DDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLE-NRAVPRP 118
Query: 710 ERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDP 769
E V D + D+ +L + D NLSGGQKQR+ IA L + I + D+
Sbjct: 119 EMIKIVRDVLA---DVGMLDYIDS-----EPANLSGGQKQRVAIAGILAVEPKIIILDES 170
Query: 770 FSAVDAHTGSHLFKEVL-LGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDV 828
S +D + K + L N+ TV+ +TH ++ AD VLV+ DGK+ G ++
Sbjct: 171 TSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEI 230
Query: 829 IN 830
+
Sbjct: 231 FS 232
|
Length = 282 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 7e-11
Identities = 69/285 (24%), Positives = 124/285 (43%), Gaps = 44/285 (15%)
Query: 1143 TFHVAAAMEWLGFRLDMLSNITF--AFSLVFLISIPKGFIDPAIAGLAVTYGLTLNNLQA 1200
TFH +A+ W SNI A LVF ++ G+ D +A TY LTL L+
Sbjct: 230 TFH-LSAVNW--------SNIMMLGAIGLVFYMANSLGWADTNVAA---TYSLTLLFLRT 277
Query: 1201 MLI--------WLACQMENKIISVERIFQYTCIPSEPPLEIEESRPNHSWPSHGKIDLRD 1252
L+ L+ Q ++ ++ + P + + W ++LR+
Sbjct: 278 PLLSAVGALPTLLSAQ-----VAFNKLNKLALAPYKAEFPR--PQAFPDWQ---TLELRN 327
Query: 1253 LQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGID 1312
+ Y F + I+ T + ++G GSGKSTL L + +P +G+IL+DG
Sbjct: 328 VTFAY-QDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKP 386
Query: 1313 ISLIGLHDLRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEG 1372
++ D R S + D +F+ + P + + L++ ++ ++ ++G
Sbjct: 387 VTAEQPEDYRKLFSAVFTDFHLFDQLLGPEGKPAN---PALVEKWLERLKMAHKLELEDG 443
Query: 1373 KL-DSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVD 1416
++ + K+ S GQ++ + L L + R IL+LDE A D
Sbjct: 444 RISNLKL-------SKGQKKRLALLLALAEERDILLLDEWAADQD 481
|
Length = 547 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 8e-11
Identities = 51/210 (24%), Positives = 93/210 (44%), Gaps = 36/210 (17%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKA----------- 684
L ++L + GM + G G+GK++L+ + P SGT+++ G
Sbjct: 16 LDGVSLTLGPGM-YGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRI 74
Query: 685 -YVAQSP-WIQSGKIEDNILFGKEMDRERYNAVLDACS-------LEKDLEILSFGDQTV 735
Y+ Q + + + + Y A L +++ LE+++ GD
Sbjct: 75 GYLPQEFGVYPNFTVREFL---------DYIAWLKGIPSKEVKARVDEVLELVNLGD--- 122
Query: 736 VGERGIN-LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKT 794
++ I LSGG ++R+ IA+AL D I + D+P + +D F+ +L L +
Sbjct: 123 RAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEE-RIRFRNLLSELGEDRI 181
Query: 795 VLYVTHQVEFLPA-ADLVLVIKDGKITQAG 823
V+ TH VE + + + V V+ GK+ G
Sbjct: 182 VILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 9e-11
Identities = 49/196 (25%), Positives = 91/196 (46%), Gaps = 14/196 (7%)
Query: 1264 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRT 1323
VL+ I+ + I G TGSGK++L+ + +EP+ G+I G
Sbjct: 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG------------- 98
Query: 1324 RLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGE 1383
R+S Q + GT++ N+ Y + + + CQL +++ K K ++ + E G
Sbjct: 99 RISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGI 158
Query: 1384 NWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQS-LRQHFSDCTVITIAHR 1442
S GQR + L R + K + +LD +D T+ I +S + + ++ T I + +
Sbjct: 159 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSK 218
Query: 1443 ITSVIDSDMVLLLSHG 1458
+ + +D +L+L G
Sbjct: 219 MEHLKKADKILILHEG 234
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 63.0 bits (153), Expect = 9e-11
Identities = 50/194 (25%), Positives = 92/194 (47%), Gaps = 28/194 (14%)
Query: 1280 IVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSIIPQDPVMFEG-T 1338
I+G +G+GKSTL+ + +EPA+G I ++ + GL + +S++ Q+ +F T
Sbjct: 29 IMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHT--GLAPYQRPVSMLFQENNLFAHLT 86
Query: 1339 VRSNV----DP---LEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQ 1391
VR N+ P L E++ +A + + D + + +L S GQRQ
Sbjct: 87 VRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQL-----------SGGQRQ 135
Query: 1392 LVCLGRVLLKRRKILMLDEATASVDTATDN----LIQQSLRQHFSDCTVITIAHRITSVI 1447
V L R L++ IL+LDE +++D L++Q + T++ + H ++
Sbjct: 136 RVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSER--QRTLLMVTHHLSDAR 193
Query: 1448 DS-DMVLLLSHGLI 1460
+ ++S G I
Sbjct: 194 AIASQIAVVSQGKI 207
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 64.9 bits (158), Expect = 9e-11
Identities = 69/240 (28%), Positives = 111/240 (46%), Gaps = 39/240 (16%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCI-LGEVPKISGTLKLCGTKAYVAQSP---- 690
L +++L V G V G G+GKS+L+ C+ L E P SG++ + G +
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT-SGSVIVDGQDLTTLSNSELTK 79
Query: 691 -------------WIQSGKIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVG 737
+ S + N+ E+D + + + + L ++ GD+
Sbjct: 80 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEI--KRKVTELLALVGLGDKH--D 135
Query: 738 ERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVD-AHTGS--HLFKEV--LLGLLNS 792
NLSGGQKQR+ IARAL + + L D+ SA+D A T S L KE+ LGL
Sbjct: 136 SYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGL--- 192
Query: 793 KTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYTDVI-NSGTDFMELVDAHKQALSTLD 850
T+L +TH+++ + D V VI +G++ + G +++ + T A K STL
Sbjct: 193 -TILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSHPKTPL-----AQKFIRSTLH 246
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.6 bits (156), Expect = 9e-11
Identities = 63/254 (24%), Positives = 109/254 (42%), Gaps = 58/254 (22%)
Query: 1248 IDLRDLQVRYAPHMPFVLRGISCTF-PGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQI 1306
++ R+L VR +L +S T PGE I+G G+GKSTL++ L + P +G++
Sbjct: 3 LEARNLSVRLGGR--TLLDDVSLTLRPGEV-VAILGPNGAGKSTLLRALSGELSPDSGEV 59
Query: 1307 LIDGIDISLIGLHDLRTRLSIIPQDPVM-FEGTVRSNV----DPLEEYTDEQ---IWEAL 1358
++G ++ +L R +++PQ + F TV V P E + AL
Sbjct: 60 RLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAAL 119
Query: 1359 DKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLL------KRRKILMLDEAT 1412
+ L + +L S G++Q V L RVL + L+LDE T
Sbjct: 120 AQVDLAHLAGRDYPQL-----------SGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPT 168
Query: 1413 ASVDTATDNLIQQSLRQHFSDCTVITIAHRIT-----SVI----D-------SDMVLLLS 1456
+++D + QH V+ +A ++ +VI D +D ++LL
Sbjct: 169 SALD------LAH---QH----HVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLH 215
Query: 1457 HGLIEEYDSPRKLL 1470
G + +P ++L
Sbjct: 216 QGRLVADGTPAEVL 229
|
Length = 258 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 9e-11
Identities = 45/189 (23%), Positives = 73/189 (38%), Gaps = 69/189 (36%)
Query: 1280 IVGRTGSGKSTLIQTLF--------RIVEPAAGQILIDGIDISLIGLHDLRTRLSIIPQD 1331
I G +G+GKS+L + L RI P +L +PQ
Sbjct: 32 ITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLF-------------------LPQR 72
Query: 1332 PVMFEGTVRSNVDPLEEYTDEQI---WEALDKCQLGDEVRKKEGKLDSKVTENGENWSMG 1388
P + GT+R EQ+ W + S G
Sbjct: 73 PYLPLGTLR-----------EQLIYPW--------------------------DDVLSGG 95
Query: 1389 QRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVID 1448
++Q + R+LL + K + LDEAT+++D +++ + Q L++ TVI++ HR +
Sbjct: 96 EQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELG--ITVISVGHRPSLWKF 153
Query: 1449 SDMVLLLSH 1457
D VL L
Sbjct: 154 HDRVLDLDG 162
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 66.5 bits (162), Expect = 1e-10
Identities = 78/273 (28%), Positives = 127/273 (46%), Gaps = 31/273 (11%)
Query: 633 NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCIL------GEVPKISG------TLKLC 680
L+D++ V G RV + G GSGKS+LLS +L GE+ +I G TL+
Sbjct: 1232 RAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTEGEI-QIDGVSWNSVTLQTW 1290
Query: 681 GTKAY--VAQSPWIQSGKIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQT--VV 736
KA+ + Q +I SG N+ ++ E V + L+ +E F D+ V+
Sbjct: 1291 -RKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIE--QFPDKLDFVL 1347
Query: 737 GERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVL 796
+ G LS G KQ + +AR++ A I L D+P + +D T + ++ L ++ TV+
Sbjct: 1348 VDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVT-LQIIRKTLKQSFSNCTVI 1406
Query: 797 YVTHQVEFLPAADLVLVIKDGKITQAGKYTDVINSGTDFMELVDAHKQALSTLDSIEGRP 856
H+VE L LVI+ + Q ++N + F KQA+S D ++ P
Sbjct: 1407 LSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLNETSLF-------KQAMSAADRLKLFP 1459
Query: 857 LSEKGSANGENDGTSATDGVVKEVENKEVQNDR 889
L + S+ + ++E +EVQN R
Sbjct: 1460 LHRRNSSKRK---PQPKITALREEAEEEVQNTR 1489
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 66.6 bits (162), Expect = 1e-10
Identities = 46/144 (31%), Positives = 80/144 (55%), Gaps = 8/144 (5%)
Query: 686 VAQSPWIQSGKIEDNILFGKE-MDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLS 744
V+Q P + + I +NI FGKE RE ++++ +E L T VG G +LS
Sbjct: 1301 VSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLS 1360
Query: 745 GGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNS--KTVLYVTHQV 802
GGQKQRI IARAL ++ I L D+ S++D+++ L ++ ++ + + KT++ + H++
Sbjct: 1361 GGQKQRIAIARALLREPKILLLDEATSSLDSNS-EKLIEKTIVDIKDKADKTIITIAHRI 1419
Query: 803 EFLPAADLVLVI----KDGKITQA 822
+ +D ++V + G QA
Sbjct: 1420 ASIKRSDKIVVFNNPDRTGSFVQA 1443
|
Length = 1466 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 1e-10
Identities = 68/253 (26%), Positives = 111/253 (43%), Gaps = 59/253 (23%)
Query: 1265 LRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRT- 1323
+ S + I+G +GSGKSTL++ L R++EP G+IL+DG DI+ + +LR
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELREL 103
Query: 1324 ---RLSIIPQDPVMF-EGTVRSNVD--------PLEEYTDEQIWEALDKCQLGDEVRKKE 1371
++S++ Q + TV NV P E +E+ EAL+ L K
Sbjct: 104 RRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAE-REERALEALELVGLEGYADKYP 162
Query: 1372 GKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLI-------- 1423
+L S G +Q V L R L IL++DEA +A D LI
Sbjct: 163 NEL-----------SGGMQQRVGLARALANDPDILLMDEAF----SALDPLIRTEMQDEL 207
Query: 1424 ---QQSLRQHFSDCTVITIAH------RITSVIDSDMVLLLSHGLIEEYDSPRKLLENKS 1474
Q L++ T++ I H RI D + ++ G I + +P ++L N +
Sbjct: 208 LELQAKLKK-----TIVFITHDLDEALRI-----GDRIAIMKDGEIVQVGTPEEILLNPA 257
Query: 1475 SSFSQLVAEYTQR 1487
+ + V ++ +
Sbjct: 258 NDY---VRDFVRN 267
|
Length = 386 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.5 bits (158), Expect = 1e-10
Identities = 62/266 (23%), Positives = 109/266 (40%), Gaps = 60/266 (22%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPK-----ISGTL------------- 677
+ ++ ++ G + + G GSGKS L I+G +PK + G +
Sbjct: 21 VDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEK 80
Query: 678 ---KLCGTK-AYVAQSPWIQSG-----KIEDNILFGKEMDRERYNAVLDACSLEKDLEIL 728
K+ G + A + Q P + I D I E+ R + + E+ +E+L
Sbjct: 81 ELRKIRGKEIAMIFQDP--MTSLNPVMTIGDQI---AEVLRLHGKGLSKKEAKERAIELL 135
Query: 729 SFGDQTVVG----ERGIN-----LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGS 779
VG ER + LSGG +QR+ IA AL + + + D+P +A+D +
Sbjct: 136 EL-----VGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQA 190
Query: 780 ---HLFKEVLLGLLNSK---TVLYVTHQVEFLP-AADLVLVIKDGKITQAGKYTDVINSG 832
L KE L + ++ +TH + + AD V V+ G+I + G ++ +
Sbjct: 191 QILDLLKE-----LQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIFKNP 245
Query: 833 TDF--MELVDAHKQALSTLDSIEGRP 856
L+++ + L I G P
Sbjct: 246 KHPYTRGLLNSLPRLGERLPPIPGSP 271
|
Length = 316 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.4 bits (154), Expect = 1e-10
Identities = 53/240 (22%), Positives = 107/240 (44%), Gaps = 25/240 (10%)
Query: 1249 DLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPA-----A 1303
+ + + Y H L+ I+ + P + T I+G +G GKST I+TL +++
Sbjct: 14 QINGMNLWYGQHH--ALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLT 71
Query: 1304 GQILIDGIDI--SLIGLHDLRTRLSIIPQDPVMFEGTVRSNV--------DPLEEYTDEQ 1353
G++ +G +I + L +LR + ++ Q F ++ NV ++ E
Sbjct: 72 GEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEI 131
Query: 1354 IWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATA 1413
+ ++L L DEV+ ++ + S GQ+Q +C+ R L +L++DE T+
Sbjct: 132 VEKSLKDVALWDEVK-------DRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTS 184
Query: 1414 SVDTATDNLIQQSLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLEN 1472
++D + I++ + + T++ + H + SD G + E + K+ N
Sbjct: 185 ALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMFSN 244
|
Length = 259 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 1e-10
Identities = 47/155 (30%), Positives = 74/155 (47%), Gaps = 22/155 (14%)
Query: 1274 GEKKT-GIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSIIPQDP 1332
E +T I+G GSGKSTL + L ++EP +G++LID + R+ +I QDP
Sbjct: 37 REGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDP 96
Query: 1333 V-----------MFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTEN 1381
+ + +R N D E ++QI E L ++ G L +
Sbjct: 97 STSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETL----------RQVGLLPDHASYY 146
Query: 1382 GENWSMGQRQLVCLGRVLLKRRKILMLDEATASVD 1416
+ GQ+Q + L R L+ R K+++ DEA AS+D
Sbjct: 147 PHMLAPGQKQRLGLARALILRPKVIIADEALASLD 181
|
Length = 267 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.9 bits (155), Expect = 1e-10
Identities = 58/190 (30%), Positives = 85/190 (44%), Gaps = 26/190 (13%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCI-----LGEVPKISGTL------------- 677
L D++LK+ +A G G GKS+LL C L K+ G L
Sbjct: 36 LVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQIN 95
Query: 678 --KLCGTKAYVAQSPWIQSGKIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQTV 735
KL V Q P I +NI F + Y LD +E L + ++
Sbjct: 96 SVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANG--YKGNLDEL-VEDSLRRAAIWEEVK 152
Query: 736 --VGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSK 793
+ E+G LSGGQ+QR+ IARA+ D+ L D+P SA+D + +E+ L L
Sbjct: 153 DKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDP-ISTRQVEELCLELKEQY 211
Query: 794 TVLYVTHQVE 803
T++ VTH ++
Sbjct: 212 TIIMVTHNMQ 221
|
Length = 274 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 2e-10
Identities = 56/214 (26%), Positives = 89/214 (41%), Gaps = 39/214 (18%)
Query: 1264 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRT 1323
L+ +S P ++ G++GR G+GKSTL++ L I P +G + + G SL+GL
Sbjct: 37 ALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLG---- 92
Query: 1324 RLSIIPQDPVMFEG--TVRSNV---------DPLEEYTDEQIWEALDKCQLGDEVRKKEG 1372
F T R N+ + DE+I E ++ +LGD
Sbjct: 93 ---------GGFNPELTGRENIYLNGRLLGLSR--KEIDEKIDEIIEFSELGD------- 134
Query: 1373 KLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFS 1432
+D V + +S G + + IL++DE A D A Q+ LR+
Sbjct: 135 FIDLPV----KTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLK 190
Query: 1433 DC-TVITIAHRITSVID-SDMVLLLSHGLIEEYD 1464
TVI ++H +S+ D L+L G I
Sbjct: 191 QGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.7 bits (152), Expect = 2e-10
Identities = 54/215 (25%), Positives = 104/215 (48%), Gaps = 23/215 (10%)
Query: 1278 TGIVGRTGSGKSTLIQTLFR---IVE--PAAGQILIDGIDI--SLIGLHDLRTRLSIIPQ 1330
T ++G +G GKST ++TL R +VE G ++ +G +I + + +LR ++ ++ Q
Sbjct: 36 TALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQ 95
Query: 1331 DPVMFEGTVRSNVD--------PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENG 1382
P F ++ N+ ++ DE + ++L K L +EV+ K+ N
Sbjct: 96 TPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVK-------DKLNTNA 148
Query: 1383 ENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHR 1442
+ S GQ+Q +C+ R L ++++DE T+++D + I++ + T+I + H
Sbjct: 149 LSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHN 208
Query: 1443 ITSVID-SDMVLLLSHGLIEEYDSPRKLLENKSSS 1476
+ SD +G IEE S +L N ++
Sbjct: 209 MQQAGRISDRTAFFLNGCIEEESSTDELFFNPKNT 243
|
Length = 254 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 2e-10
Identities = 49/245 (20%), Positives = 112/245 (45%), Gaps = 32/245 (13%)
Query: 1251 RDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVE-----PAAGQ 1305
+L V Y + ++ + P + T +G +G GKST+++ R+ + G+
Sbjct: 14 ENLNVYYGSFL--AVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGK 71
Query: 1306 ILIDGIDI--SLIGLHDLRTRLSIIPQDPVMFEGTVRSN------VDPLEEYTDEQIWEA 1357
+ G ++ + ++R R+ ++ Q P F ++ N ++ + DE + +
Sbjct: 72 VTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERS 131
Query: 1358 LDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDT 1417
L + L DEV+ K+ ++G + S GQ+Q +C+ R + + +++++DE +++D
Sbjct: 132 LRQAALWDEVK-------DKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDP 184
Query: 1418 ATDNLIQQSLRQHFSDCTVITIAHRITSVID-SDMVLLLS---------HGLIEEYDSPR 1467
+ I++ + + T+I + H + SDM + +G + E+D
Sbjct: 185 ISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEFDRTE 244
Query: 1468 KLLEN 1472
K+ +
Sbjct: 245 KIFNS 249
|
Length = 264 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 2e-10
Identities = 64/238 (26%), Positives = 101/238 (42%), Gaps = 41/238 (17%)
Query: 613 SSETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPK 672
S +++ +F+ + +I+L V G A+ G G GK++LL I G++
Sbjct: 3 SVANLVDMRGVSFT---RGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAP 59
Query: 673 ISGTL--------KLCGTKAYVAQ---SPWIQSG------KIEDNILFGKEMDRERYNAV 715
G + + ++ Y + S QSG + DN+ + + +
Sbjct: 60 DHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPL 119
Query: 716 LDACSLEKDLEILSFGDQTVVGERGI------NLSGGQKQRIQIARALYQDADIYLFDDP 769
L + + K LE VG RG LSGG +R +ARA+ + D+ +FD+P
Sbjct: 120 LHSTVMMK-LE--------AVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEP 170
Query: 770 FSAVDAHTGSHLFKEVLLGLLNSK---TVLYVTHQV-EFLPAADLVLVIKDGKITQAG 823
F D T L K L+ LNS T + V+H V E L AD ++ D KI G
Sbjct: 171 FVGQDPITMGVLVK--LISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHG 226
|
Length = 269 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.4 bits (151), Expect = 3e-10
Identities = 60/231 (25%), Positives = 105/231 (45%), Gaps = 33/231 (14%)
Query: 629 ISSHNPTLKDINLKVFHGMRV--------AVCGTVGSGKSSLLSCIL---GEVP--KISG 675
IS+ + L N + HG+ + A+ G G GKS+ L C+ ++ KI+G
Sbjct: 5 ISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITG 64
Query: 676 TLKLCGTKAY---------------VAQSPWIQSGKIEDNILFGKEMDRERYNAVLDACS 720
+K G Y V Q P + DN+ +G ++ + ++D
Sbjct: 65 EIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQ-R 123
Query: 721 LEKDLEILSFGDQTV--VGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTG 778
+E+ L+ + +T + SGGQ+QRI IARAL + L D+P SA+D +
Sbjct: 124 VEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISS 183
Query: 779 SHLFKEVLLGLLNSKTVLYVTHQVEFLP-AADLVLVIKDGKITQAGKYTDV 828
S + +E L+ L + T + VTH ++ +D + +G + +AG ++
Sbjct: 184 SEI-EETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEM 233
|
Length = 251 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 3e-10
Identities = 57/192 (29%), Positives = 91/192 (47%), Gaps = 24/192 (12%)
Query: 1248 IDLRDLQVRYAPHMPFVLRGISCTF-PGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQI 1306
+ +L RY V+ G+S + GE G++G G+GK+T + +V+P +G+I
Sbjct: 1 LRAENLSKRYGKRK--VVNGVSLSVKQGEI-VGLLGPNGAGKTTTFYMIVGLVKPDSGKI 57
Query: 1307 LIDGIDISLIGLHDLRTRLSII--PQDPVMFEG-TVRSNVDPLEEYTDEQIWEALDKC-Q 1362
L+DG DI+ + +H R RL I PQ+ +F TV N+ + E E +K +
Sbjct: 58 LLDGQDITKLPMHK-RARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEE 116
Query: 1363 LGDE-----VRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDT 1417
L +E +RK + S G+R+ V + R L K L+LDE A VD
Sbjct: 117 LLEEFHITHLRKS----------KASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDP 166
Query: 1418 ATDNLIQQSLRQ 1429
IQ+ ++
Sbjct: 167 IAVQDIQKIIKI 178
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.7 bits (156), Expect = 3e-10
Identities = 36/93 (38%), Positives = 55/93 (59%), Gaps = 10/93 (10%)
Query: 742 NLSGGQKQRIQIARALYQDADIYLFDDPFSAVD-AHTGS--HLFKEV--LLGLLNSKTVL 796
LSGGQKQR+ IARAL + + L D+ SA+D A T S L K++ LGL T++
Sbjct: 140 QLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGL----TIV 195
Query: 797 YVTHQVEFLPA-ADLVLVIKDGKITQAGKYTDV 828
+TH+++ + D V VI G++ + G ++V
Sbjct: 196 LITHEMDVVKRICDRVAVIDAGRLVEQGTVSEV 228
|
Length = 343 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.7 bits (152), Expect = 3e-10
Identities = 65/228 (28%), Positives = 102/228 (44%), Gaps = 26/228 (11%)
Query: 1252 DLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDG- 1310
DL RY VL+G++ F TG+VG G GKSTL L ++ P G +L G
Sbjct: 6 DLWFRYQDEP--VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGK 63
Query: 1311 -IDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLG---DE 1366
+D S GL LR +++ + QDP + YTD A LG E
Sbjct: 64 PLDYSKRGLLALRQQVATVFQDP-----------EQQIFYTDIDSDIAFSLRNLGVPEAE 112
Query: 1367 VRKKEGKLDSKVTENG------ENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATD 1420
+ ++ + + V + S GQ++ V + L+ + + L+LDE TA +D A
Sbjct: 113 ITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGR 172
Query: 1421 NLIQQSLRQHFSDCT-VITIAHRITSVID-SDMVLLLSHGLIEEYDSP 1466
+ +R+ + VI +H I + + SD V +L G I + +P
Sbjct: 173 TQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAP 220
|
Length = 271 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 3e-10
Identities = 57/215 (26%), Positives = 104/215 (48%), Gaps = 33/215 (15%)
Query: 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRI---VEPA- 1302
K+ RD+ V Y L + P + T +G +G GKST ++ L R+ ++
Sbjct: 19 KMRARDVSVFYGEKQ--ALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCR 76
Query: 1303 -AGQILIDGIDI--SLIGLHDLRTRLSIIPQDPVMFEGTVRSNVD---------PLEEYT 1350
G+I +DG DI + + +LR R+ ++ Q P F ++ NV +
Sbjct: 77 VTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAEL 136
Query: 1351 DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDE 1410
DE + +L K L +EV+ ++ E G S GQ+Q +C+ R + +++++DE
Sbjct: 137 DEIVETSLRKAGLWEEVK-------DRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDE 189
Query: 1411 ATASVD---TA-TDNLIQQSLRQHFSDCTVITIAH 1441
+++D TA + LI + LRQ++ T++ + H
Sbjct: 190 PCSALDPIATAKVEELIDE-LRQNY---TIVIVTH 220
|
Length = 267 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 64.2 bits (156), Expect = 3e-10
Identities = 67/249 (26%), Positives = 103/249 (41%), Gaps = 31/249 (12%)
Query: 1228 EPPLEIEESR------PNHSWPSHGKIDLRDLQVRYAP-----HMPFVLRGISCTFPGEK 1276
EP LE+ ++ + S I+L+D V P F L I
Sbjct: 315 EPELELSDADNVLLLAHDKSV---DSIELKD--VHMNPKAPEGSEGFALGPIDLRIAQGD 369
Query: 1277 KTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSIIPQDPVMFE 1336
IVG G GKSTL + + P G+IL+DG +S D R S I D +F+
Sbjct: 370 IVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFD 429
Query: 1337 GTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLG 1396
+ D E + + + L + ++ D+V+ ++G S T S GQ++ + L
Sbjct: 430 DLIGP--DEGEHASLDNAQQYLQRLEIADKVKIEDGGF-STTTA----LSTGQQKRLALI 482
Query: 1397 RVLLKRRKILMLDEATASVDTATDNLIQQSL-----RQHFSDCTVITIAHRITSVIDSDM 1451
L+ R IL+ DE A D A + L RQ T+I I+H +D
Sbjct: 483 CAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQ---GKTIIIISHDDQYFELADQ 539
Query: 1452 VLLLSHGLI 1460
++ L+ G I
Sbjct: 540 IIKLAAGCI 548
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 3e-10
Identities = 55/211 (26%), Positives = 91/211 (43%), Gaps = 48/211 (22%)
Query: 650 AVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK-----------------AYVAQS--- 689
A+ G G+GK+SL++ I G G + L G YV Q
Sbjct: 28 AIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARL 87
Query: 690 -PWIQSGKIEDNILFG-KEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQ 747
P K+ N+ +G + +++ ++ +E L+ +LSGG+
Sbjct: 88 FPHY---KVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYP-----------GSLSGGE 133
Query: 748 KQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLN--SKTV----LYVTHQ 801
KQR+ I RAL ++ L D+P +++D K LL L ++ + LYV+H
Sbjct: 134 KQRVAIGRALLTAPELLLMDEPLASLDLPR-----KRELLPYLERLAREINIPILYVSHS 188
Query: 802 V-EFLPAADLVLVIKDGKITQAGKYTDVINS 831
+ E L AD V+V++ GK+ G +V S
Sbjct: 189 LDEILRLADRVVVLEQGKVKAFGPLEEVWAS 219
|
Length = 352 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 4e-10
Identities = 54/209 (25%), Positives = 93/209 (44%), Gaps = 20/209 (9%)
Query: 1264 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAA---GQILIDGIDISLIGLHD 1320
+L +S + I+G +GSGK+TL+ + VE GQIL +G
Sbjct: 22 ILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQ 78
Query: 1321 LRTRLSIIPQDPVMFEG-TVR-----SNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKL 1374
+ ++ + QD ++ G TVR + + L + + I + ++V ++ L
Sbjct: 79 FQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRV-----EDVLLRDLAL 133
Query: 1375 DSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHF-SD 1433
+ S G+R+ V + LL K+L+LDE T+ +D+ T + +L Q +
Sbjct: 134 TRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRN 193
Query: 1434 CTVITIAHRITSVIDS--DMVLLLSHGLI 1460
VI H+ S + D +LLLS G I
Sbjct: 194 RIVILTIHQPRSDLFRLFDRILLLSSGEI 222
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 4e-10
Identities = 65/241 (26%), Positives = 116/241 (48%), Gaps = 29/241 (12%)
Query: 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKK--TGIVGRTGSGKSTLIQTLFRIVEPAAGQ 1305
++ RDL+ Y P L+GI+ F EK ++G G+GKSTL I++P +G+
Sbjct: 2 LETRDLKYSY-PDGTEALKGIN--FKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGE 58
Query: 1306 ILIDG--IDISLIGLHDLRTRLSIIPQDP--VMFEGTVRSNV--DPL-----EEYTDEQI 1354
+LI G I L ++R + I+ Q+P +F TV +V PL +E ++++
Sbjct: 59 VLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRV 118
Query: 1355 WEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATAS 1414
EAL + K L S GQ++ V + +L + +I++LDE T+
Sbjct: 119 KEALKAVGMEGFENKPPHHL-----------SGGQKKRVAIAGILAMKPEIIVLDEPTSG 167
Query: 1415 VDTATDNLIQQSLRQ-HFSDCTVITIAHRITSV-IDSDMVLLLSHGLIEEYDSPRKLLEN 1472
+D + I + L + T+I H + V + +D V ++S G I + +P+++ +
Sbjct: 168 LDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227
Query: 1473 K 1473
Sbjct: 228 I 228
|
Length = 275 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.6 bits (149), Expect = 4e-10
Identities = 57/193 (29%), Positives = 95/193 (49%), Gaps = 30/193 (15%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCI-----LGEVPKISGTLKLCGTKAY----- 685
L +IN+K+ A+ G G GKS+ L + L E KI G + G Y
Sbjct: 23 LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82
Query: 686 ----------VAQSPWIQSGKIEDNILFGKEM----DRERYNAVLDACSLEKDLEILSFG 731
V Q+P I DNI +G ++ D+++ + +++ SL+K
Sbjct: 83 ILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQ-SLKKSALWNEVK 141
Query: 732 DQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDA-HTGSHLFKEVLLGLL 790
D+ + ++LSGGQ+QR+ IAR L + ++ L D+P SA+D TG +E+++ L
Sbjct: 142 DK--LNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGK--IEELIINLK 197
Query: 791 NSKTVLYVTHQVE 803
S T++ VTH ++
Sbjct: 198 ESYTIIIVTHNMQ 210
|
Length = 254 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 4e-10
Identities = 60/242 (24%), Positives = 110/242 (45%), Gaps = 31/242 (12%)
Query: 1248 IDLRDLQVRYAPHMPFVLRG---ISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAG 1304
I + ++ RY PF R ++ + P I+G TGSGKSTL+Q L +++P +G
Sbjct: 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSG 62
Query: 1305 QILIDGIDISL----IGLHDLRTRLSIIPQDP--VMFEGTVRSNV--DPL-----EEYTD 1351
+ I I+ L LR ++ I+ Q P +FE TV ++ P+ EE
Sbjct: 63 TVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAK 122
Query: 1352 EQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEA 1411
++ E ++ L +E+ + S +G GQ + V + VL ++L+LDE
Sbjct: 123 QKAREMIELVGLPEELLAR-----SPFELSG-----GQMRRVAIAGVLAMEPEVLVLDEP 172
Query: 1412 TASVDTATDNLIQQ---SLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPR 1467
TA +D + + L + T + + H + +D ++++ G + +PR
Sbjct: 173 TAGLDPKGRKEMMEMFYKLHKE-KGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPR 231
Query: 1468 KL 1469
++
Sbjct: 232 EI 233
|
Length = 290 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.0 bits (150), Expect = 4e-10
Identities = 59/242 (24%), Positives = 109/242 (45%), Gaps = 30/242 (12%)
Query: 618 IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTL 677
+E+ + F ++ S L ++ + G V++ G GSGKS+ I G + G +
Sbjct: 5 LEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKV 64
Query: 678 KLCGTK-------------AYVAQSPWIQ--SGKIEDNILFGKE---MDRERYNAVLDAC 719
K+ G V Q+P Q +ED++ FG E + RE +D
Sbjct: 65 KIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEA 124
Query: 720 SLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGS 779
L + +L F + LSGGQKQR+ +A + +I + D+ S +D
Sbjct: 125 LLA--VNMLDFKTREPA-----RLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQ 177
Query: 780 HLFKEVLLGLLNSK---TVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVINSGTDFM 836
+ + ++ + K TVL +TH ++ ++D +LV+K G+I + +++ + D +
Sbjct: 178 EIMR--VIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFATSEDMV 235
Query: 837 EL 838
E+
Sbjct: 236 EI 237
|
Length = 277 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.9 bits (149), Expect = 5e-10
Identities = 60/225 (26%), Positives = 92/225 (40%), Gaps = 59/225 (26%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK------------ 683
L+ ++L+V G VA+ G G+GK++LL I+G V SG + G
Sbjct: 19 LRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARL 78
Query: 684 --AYVAQSPWI-QSGKIEDNILFGKEMDRERYNAVLDACSLEKDLEI---LSFGDQTVVG 737
AYV + I +E+N+L G R++ D LE+ E+ L +
Sbjct: 79 GIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERD---LEEVYELFPRL----KERRN 131
Query: 738 ERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL-------- 789
+R LSGG++Q + IARAL + L D+P GL
Sbjct: 132 QRAGTLSGGEQQMLAIARALMSRPKLLLLDEPS----------------EGLAPKIVEEI 175
Query: 790 ------LNSK---TVLYVTHQVEF-LPAADLVLVIKDGKITQAGK 824
L + T+L V F L AD V+++G+I +G
Sbjct: 176 FEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGT 220
|
Length = 237 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 5e-10
Identities = 48/178 (26%), Positives = 84/178 (47%), Gaps = 23/178 (12%)
Query: 1264 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIG---LHD 1320
VL+G+S + + IVG +GSGKSTL+ L + P +G++L +G +S +
Sbjct: 20 VLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAK 79
Query: 1321 LRTR-LSIIPQ-DPVMFEGTVRSNVD-PL------EEYTDEQIWEALDKCQLGDEVRKKE 1371
LR + L I Q ++ + T NV PL + E+ +E L+K L + +
Sbjct: 80 LRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRP 139
Query: 1372 GKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQ 1429
+L S G+RQ V + R L+ + +++ DE T ++D +I + +
Sbjct: 140 SEL-----------SGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLE 186
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 5e-10
Identities = 48/215 (22%), Positives = 94/215 (43%), Gaps = 22/215 (10%)
Query: 1265 LRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTR 1324
+ G++ + G +G G+GK+T I+ L ++ P +G + G D+ + +R
Sbjct: 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDV-VREPRKVRRS 67
Query: 1325 LSIIPQDPVMFEG-TVRSNVDPL-------EEYTDEQIWEALDKCQLGDEVRKKEGKLDS 1376
+ I+PQ + E T R N++ + ++ +E+ E L+ +LG+ + G
Sbjct: 68 IGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVG---- 123
Query: 1377 KVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQ-HFSDCT 1435
+S G R+ + + L+ + +L LDE T +D T I +R T
Sbjct: 124 -------TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVT 176
Query: 1436 VITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKL 1469
++ H + D + ++ HG I +P +L
Sbjct: 177 ILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEEL 211
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 5e-10
Identities = 62/222 (27%), Positives = 107/222 (48%), Gaps = 31/222 (13%)
Query: 1278 TGIVGRTGSGKSTLIQTLFRIVE--PA---AGQILIDGIDI--SLIGLHDLRTRLSIIPQ 1330
T I+G +G GKST ++ + R+ + P+ G ++ DG DI LR ++ ++ Q
Sbjct: 68 TAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQ 127
Query: 1331 DPVMFEGTVRSNV---DPLEEYTD-----EQIWEALDKCQLGDEVRKKEGKLDSKVTENG 1382
P F ++ N+ L D E + ++L K L DEV + LD +N
Sbjct: 128 KPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDR---LD----KNA 180
Query: 1383 ENWSMGQRQLVCLGRVLLKRRKILMLDEATASVD---TAT-DNLIQQSLRQHFSDCTVIT 1438
S GQ+Q +C+ R L +IL+LDE T+++D TA ++LIQ+ LR + T++
Sbjct: 181 LGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQE-LRGSY---TIMI 236
Query: 1439 IAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLENKSSSFSQ 1479
+ H + SD + G++ E+ +L N ++
Sbjct: 237 VTHNMQQASRVSDYTMFFYEGVLVEHAPTAQLFTNPKDRMTE 278
|
Length = 286 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.2 bits (148), Expect = 6e-10
Identities = 65/237 (27%), Positives = 103/237 (43%), Gaps = 37/237 (15%)
Query: 615 ETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCI-----LGE 669
+ I+I NF + + LK+IN+ A+ G G GKS+LL + +
Sbjct: 2 DPKIKIRGVNFFY---HKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVS 58
Query: 670 VPKISGTLKLCGTKAY---------------VAQSPWIQSGKIEDNILFGKEMDRERYNA 714
++ G + L Y V Q P I DN+ FG M +
Sbjct: 59 GARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQS 118
Query: 715 VLDACSLEKDLEILSFGDQTV--VGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSA 772
LD +EK L + D+ + + G+ LSGGQ+QR+ IAR L + ++ L D+P SA
Sbjct: 119 RLDEV-VEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSA 177
Query: 773 VDAHTGSHLFKEVLLGLLNSKTVLYVTHQVE----------FLPAADLVLVIKDGKI 819
+D + +E++ L + T+ VTH ++ FL DLV + G+I
Sbjct: 178 LDP-VSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEI 233
|
Length = 251 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.7 bits (152), Expect = 6e-10
Identities = 56/220 (25%), Positives = 102/220 (46%), Gaps = 32/220 (14%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK------------ 683
+KD +L + G + G GSGKS+++ + + G + + G
Sbjct: 44 VKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREV 103
Query: 684 -----AYVAQS-PWIQSGKIEDNILFGKEMD----RERYNAVLDACSLEKDLEILSFGDQ 733
A V QS + + DN FG E+ ER LDA + LE +
Sbjct: 104 RRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALR-QVGLENYAHSYP 162
Query: 734 TVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVL-LGLLNS 792
LSGG +QR+ +ARAL + DI L D+ FSA+D + + E++ L +
Sbjct: 163 D-------ELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQ 215
Query: 793 KTVLYVTHQV-EFLPAADLVLVIKDGKITQAGKYTDVINS 831
+T+++++H + E + D + ++++G++ Q G +++N+
Sbjct: 216 RTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNN 255
|
Length = 400 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.4 bits (151), Expect = 6e-10
Identities = 72/272 (26%), Positives = 125/272 (45%), Gaps = 33/272 (12%)
Query: 577 AIISMTIQTKVSLQRIASFFCLDELQPDLVEKQPRGSSETAIEIADGNFSWDISSHNPTL 636
A + + Q K L++ F + Q DL+++ ++ EI + NF W ++ L
Sbjct: 45 AWLKLPKQKKAELKQ---FLNKKKTQVDLLKEDFNHAN--VFEIRNFNF-WYMNRTKHVL 98
Query: 637 KDINLKVFHGMRVAVCGTVGSGKSSLLSCI------------LGEV---------PKISG 675
D+NL + A G G GKS+ L + GE+ KIS
Sbjct: 99 HDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKIS- 157
Query: 676 TLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQTV 735
+L+L V Q P I DN+ +G + +L+ +EK L+ + D+
Sbjct: 158 SLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKI-VEKSLKSAALWDEVK 216
Query: 736 --VGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSK 793
+ + G LSGGQ+QR+ IARA+ + ++ L D+P SA+D + + +E++L L
Sbjct: 217 DDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKI-EELILELKKKY 275
Query: 794 TVLYVTHQV-EFLPAADLVLVIKDGKITQAGK 824
+++ VTH + + +D + G I +AG+
Sbjct: 276 SIIIVTHSMAQAQRISDETVFFYQGWIEEAGE 307
|
Length = 329 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 6e-10
Identities = 71/274 (25%), Positives = 118/274 (43%), Gaps = 45/274 (16%)
Query: 603 PDLVEKQPRGSSETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSL 662
+ P S AI++A + S+ + ++ V G + G G+GKS++
Sbjct: 27 SEAKASIPGSMSTVAIDLAGVSKSY---GDKAVVNGLSFTVASGECFGLLGPNGAGKSTI 83
Query: 663 LSCILGEVPKISGTLKLCG----TKAYVAQS-----PWIQSGKIE----DNIL-FGK--E 706
ILG +G + + G +A +A++ P + +E +N+L FG+
Sbjct: 84 ARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFG 143
Query: 707 MDRERYNAV----LDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDAD 762
M AV L+ LE + R +LSGG K+R+ +ARAL D
Sbjct: 144 MSTREIEAVIPSLLEFARLESKADA-----------RVSDLSGGMKRRLTLARALINDPQ 192
Query: 763 IYLFDDPFSAVDAHTGSHLFKEVLLGLL-NSKTVLYVTHQVEFLPAA----DLVLVIKDG 817
+ + D+P + +D H HL E L LL KT+L TH F+ A D + V++ G
Sbjct: 193 LLILDEPTTGLDPH-ARHLIWERLRSLLARGKTILLTTH---FMEEAERLCDRLCVLEAG 248
Query: 818 KITQAGKYTDVINS--GTDFMELVDAHKQALSTL 849
+ G+ +I+ G +E+ LS+L
Sbjct: 249 RKIAEGRPHALIDEHIGCQVIEIYGGDPHELSSL 282
|
Length = 340 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 7e-10
Identities = 60/219 (27%), Positives = 101/219 (46%), Gaps = 42/219 (19%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG--------TKAY 685
LK I+ + G A+ G G+GKS+L+ I G VP SGTL++ G KA+
Sbjct: 25 EVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAH 84
Query: 686 ------VAQSPWI---QSGKIEDNILFG---KEMDRERYNAVLDA--CSLEKDLE--ILS 729
V Q P + S +++NILFG ++ ++ +L A C L+ D L
Sbjct: 85 QLGIYLVPQEPLLFPNLS--VKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLE 142
Query: 730 FGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL 789
D+ Q ++I R L +D+ I + D+P +++ LF + L
Sbjct: 143 VADR---------------QIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELL 187
Query: 790 LNSKTVLYVTHQV-EFLPAADLVLVIKDGKITQAGKYTD 827
+++++H++ E AD + V++DG I +GK D
Sbjct: 188 AQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTAD 226
|
Length = 510 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 8e-10
Identities = 56/215 (26%), Positives = 106/215 (49%), Gaps = 33/215 (15%)
Query: 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRI--VEPAA- 1303
+ID++DL + Y + ++ T +G +G GKST+++TL R+ V P A
Sbjct: 4 RIDVKDLNIYYGSFH--AVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGAR 61
Query: 1304 --GQILIDGIDISLIGLH--DLRTRLSIIPQDPVMFEG-TVRSNV--------DPLEEYT 1350
G++L+DG D+ G+ +R + ++ Q P F ++R NV ++
Sbjct: 62 VEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDL 121
Query: 1351 DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDE 1410
DE + ++L L +EV+ + K G S GQ+Q +C+ R + +L++DE
Sbjct: 122 DELVEKSLRGANLWNEVKDRLDK-------PGGGLSGGQQQRLCIARAIAVEPDVLLMDE 174
Query: 1411 ATASVDT----ATDNLIQQSLRQHFSDCTVITIAH 1441
+++D A ++LI + L+Q + T++ + H
Sbjct: 175 PCSALDPISTLAIEDLINE-LKQDY---TIVIVTH 205
|
Length = 258 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 8e-10
Identities = 44/180 (24%), Positives = 81/180 (45%), Gaps = 25/180 (13%)
Query: 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1307
I+ RDL Y+ L I+ P + ++G G+GKSTL + I++P +G +L
Sbjct: 4 IETRDLCYSYSGSKE-ALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVL 62
Query: 1308 IDGIDISLIGLHDLRTRLSIIPQDP--VMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGD 1365
I G I+ + ++R + ++ Q+P +F TV ++ A LG
Sbjct: 63 IRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDI-------------AFGPINLGL 109
Query: 1366 EVRKKEGKLDSKVTENG---------ENWSMGQRQLVCLGRVLLKRRKILMLDEATASVD 1416
+ ++ S + G + S G+++ V + V+ ++L+LDE TA +D
Sbjct: 110 DEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLD 169
|
Length = 277 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.0 bits (153), Expect = 9e-10
Identities = 50/159 (31%), Positives = 77/159 (48%), Gaps = 21/159 (13%)
Query: 1272 FPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIG---LHDLRTRLSII 1328
+PGE +VG +GSGKST + L R+VE G+I+ +G I + L LR + I
Sbjct: 348 WPGET-LSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFI 406
Query: 1329 PQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQL--GDEVRKKEGKLDSKVTENGEN-- 1384
QDP +++DP + D I E L L G + L +V E+
Sbjct: 407 FQDPY-------ASLDPRQTVGD-SIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAW 458
Query: 1385 -----WSMGQRQLVCLGRVLLKRRKILMLDEATASVDTA 1418
+S GQRQ +C+ R L K+++ DEA +++D +
Sbjct: 459 RYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVS 497
|
Length = 623 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 59.8 bits (146), Expect = 1e-09
Identities = 56/223 (25%), Positives = 90/223 (40%), Gaps = 53/223 (23%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK---------- 683
L ++L V G VA+ G G+GK++LL I+G +P SG+++ G
Sbjct: 14 QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERA 73
Query: 684 ----AYVAQSPWIQSG-KIEDNILFG-----KEMDRERYNAVLDACSLEKDLEILSFGDQ 733
YV + I +E+N+L G + + R V + F
Sbjct: 74 RAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYEL-----------F--- 119
Query: 734 TVVGER----GINLSGGQKQRIQIARALYQDADIYLFDDPF-----SAVDAHTGSHLFKE 784
+ ER LSGG++Q + IARAL + L D+P V+ +F+
Sbjct: 120 PRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVE-----EIFE- 173
Query: 785 VLLGLLNSK--TVLYVTHQVEF-LPAADLVLVIKDGKITQAGK 824
+ L + T+L V F L AD V++ G++ G
Sbjct: 174 -AIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGT 215
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 1e-09
Identities = 52/206 (25%), Positives = 91/206 (44%), Gaps = 44/206 (21%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILG-----EVPKISGTLKLCGTKAY----- 685
LK +++ + A+ G G GKS+ L C+ + +I G+++L G Y
Sbjct: 61 LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120
Query: 686 ----------VAQSPWIQSGKIEDNILFGKEM----------------DRERYNAVLDAC 719
V QSP I +NI +G D++ + ++
Sbjct: 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELV--- 177
Query: 720 SLEKDLEILSFGDQT--VVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHT 777
E+ L + D+ + + + LSGGQ+QR+ IAR L D ++ L D+P SA+D
Sbjct: 178 --ERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIA 235
Query: 778 GSHLFKEVLLGLLNSKTVLYVTHQVE 803
S + ++++ L TV+ VTH ++
Sbjct: 236 TSKI-EDLIEELAEEYTVVVVTHNMQ 260
|
Length = 305 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 1e-09
Identities = 58/234 (24%), Positives = 105/234 (44%), Gaps = 49/234 (20%)
Query: 1265 LRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTR 1324
L+G++ T + ++G +G GKSTL+ + + +P +G ++++G I+ G
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPG------- 53
Query: 1325 LSIIPQDPVMFEG-------TVRSNV---------DPLEEYTDEQIWEALDKCQLGDEVR 1368
P V+F+ TVR N+ D + + E + L +
Sbjct: 54 ----PDRMVVFQNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAAD 109
Query: 1369 KKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLR 1428
K+ G+L S G +Q V + R L R K+L+LDE ++D T +Q+ L
Sbjct: 110 KRPGQL-----------SGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELM 158
Query: 1429 QHFSD--CTVITIAHRI-TSVIDSDMVLLLSHG--------LIEEYDSPRKLLE 1471
Q + + TV+ + H + +++ SD V++L++G L + PR LE
Sbjct: 159 QIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEVPFPRPRDRLE 212
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.4 bits (146), Expect = 1e-09
Identities = 54/189 (28%), Positives = 92/189 (48%), Gaps = 25/189 (13%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSC---ILGEVPKISGTLKLCGTK--------- 683
L DIN+++ A+ G G GKS+ L C + ++ KI G +++ G
Sbjct: 18 LFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVAL 77
Query: 684 ----AYVAQSPWIQSGKIEDNI-----LFGKEMDRERYNAVLDACSLEKDLEILSFGDQT 734
V Q P + I +NI L G +++ A++ C L+K D+
Sbjct: 78 RKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDC-LQKVGLFEEVKDK- 135
Query: 735 VVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKT 794
+ + + LSGGQ+QR+ IARAL + L D+P SA+D S + +E+L L ++ +
Sbjct: 136 -LKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDP-ISSGVIEELLKELSHNLS 193
Query: 795 VLYVTHQVE 803
++ VTH ++
Sbjct: 194 MIMVTHNMQ 202
|
Length = 246 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 1e-09
Identities = 56/219 (25%), Positives = 101/219 (46%), Gaps = 42/219 (19%)
Query: 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRI-------- 1298
+++R+L + Y L IS P + T +G +G GKSTL++ R+
Sbjct: 25 ALEVRNLNLFYGDKQ--ALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCR 82
Query: 1299 VEPAAGQILIDGIDISLIGLH--DLRTRLSIIPQDPVMFEGTVRSNV----------DPL 1346
+E G+I +DG +I + +LR R+ ++ Q P F ++ NV +
Sbjct: 83 IE---GEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINN-- 137
Query: 1347 EEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKIL 1406
DE + +L L DEV+ ++ EN S GQ+Q + + R + ++L
Sbjct: 138 RRVLDEAVERSLRGAALWDEVK-------DRLHENAFGLSGGQQQRLVIARAIAIEPEVL 190
Query: 1407 MLDEATASVD---TAT-DNLIQQSLRQHFSDCTVITIAH 1441
+LDE T+++D T + LI + L+ + T++ + H
Sbjct: 191 LLDEPTSALDPISTLKIEELITE-LKSKY---TIVIVTH 225
|
Length = 272 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 1e-09
Identities = 52/220 (23%), Positives = 91/220 (41%), Gaps = 45/220 (20%)
Query: 1263 FVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLR 1322
+ L+ IS ++ GI+G G+GKSTL++ + I +P +G++ + G LI L
Sbjct: 41 WALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELG--- 97
Query: 1323 TRLSIIPQDPVMFEGTVRSNV-------DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLD 1375
P E T R N+ + DE++ E ++ +LGD +D
Sbjct: 98 --AGFDP------ELTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGD-------FID 142
Query: 1376 SKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTA--------TDNLIQQSL 1427
V + +S G + IL+LDE A D A + L++++
Sbjct: 143 QPV----KTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNK 198
Query: 1428 RQHFSDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSP 1466
T++ ++H + ++ D + L HG I SP
Sbjct: 199 -------TIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSP 231
|
Length = 249 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 1e-09
Identities = 51/190 (26%), Positives = 87/190 (45%), Gaps = 26/190 (13%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCI-----LGEVPKISGTLKLCGTKAY----- 685
+K++ L + A G G GKS++L C L ++ G + G Y
Sbjct: 26 VKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVD 85
Query: 686 ----------VAQSPWIQSGKIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQTV 735
V Q P I DNI +G ++ Y +D +E+ L + D+
Sbjct: 86 PVEVRRRIGMVFQKPNPFPKSIYDNIAYGARING--YKGDMDEL-VERSLRQAALWDEVK 142
Query: 736 --VGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSK 793
+ + G++LSGGQ+QR+ IARA+ ++ L D+P SA+D + +E++ L
Sbjct: 143 DKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDP-ISTLRIEELMHELKEQY 201
Query: 794 TVLYVTHQVE 803
T++ VTH ++
Sbjct: 202 TIIIVTHNMQ 211
|
Length = 264 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 62.7 bits (152), Expect = 1e-09
Identities = 92/416 (22%), Positives = 158/416 (37%), Gaps = 46/416 (11%)
Query: 440 LGIASVAAFFGTVIFMLVNVPLSTVQE----KFQNELMKSKDERMKATSEILRNMRILKL 495
L SV F T+ +++ + KF + +D + T I + LK+
Sbjct: 147 LAYLSVPMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKI 206
Query: 496 QGWELKFLSKTIDLRKSESGWLKRCLYTSSITSFVFWCAPTFVSVITFGT--CILLKVPL 553
G + ES L+ I F+ A F ++ F C L +
Sbjct: 207 HGIRRLSFAHG---AIQESANNIADLHIIEILIFIA--AENFGQLLFFLLIGCALFAAAM 261
Query: 554 ESGKVLSAIATFRLLQILIYKLP-----AIISMTIQTKVSLQRIASF-FCLDELQP---- 603
+ +AI+ F +L +L K P + + + Q +++ QR+A F +E +P
Sbjct: 262 FASIDAAAISAF-VLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELEL 320
Query: 604 ---DLVEKQPRGSSETAIEIADGNFSW-DISSHNP-TLKDINLKVFHGMRVAVCGTVGSG 658
D V S +IE+ D + + L I+L++ G V + G G G
Sbjct: 321 SDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCG 380
Query: 659 KSSLLSCILGEVPKISGTLKLCGTKAYVAQS----PWIQSGKIEDNILF--------GKE 706
KS+L G G + L G A A S + S D LF G+
Sbjct: 381 KSTLAKLFCGLYIPQEGEILLDG-AAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEGEH 439
Query: 707 MDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLF 766
+ L + ++I G T LS GQ++R+ + A +D I LF
Sbjct: 440 ASLDNAQQYLQRLEIADKVKIEDGGFSTTT-----ALSTGQQKRLALICAWLEDRPILLF 494
Query: 767 DDPFSAVDAHTGSHLFKEVLLGL-LNSKTVLYVTHQVEFLPAADLVLVIKDGKITQ 821
D+ + D ++E+L L KT++ ++H ++ AD ++ + G I +
Sbjct: 495 DEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVK 550
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.5 bits (146), Expect = 1e-09
Identities = 57/221 (25%), Positives = 106/221 (47%), Gaps = 30/221 (13%)
Query: 1265 LRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTR 1324
L G+S + + I+G+ GSGKST + + + E G++ IDG ++ + +LR +
Sbjct: 23 LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRK 82
Query: 1325 LSIIPQDP-VMFEG-TVRSNVD--------PLEEYTDEQIWEALDKCQLGDEVRKKEGKL 1374
+ ++ Q+P F G TV +V P EE +++ EAL + D ++ +L
Sbjct: 83 IGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMI-KRVDEALLAVNMLDFKTREPARL 141
Query: 1375 DSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQ----- 1429
S GQ+Q V + ++ R +I++LDE+T+ +D I + + +
Sbjct: 142 -----------SGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKY 190
Query: 1430 HFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLL 1470
TV++I H + SD +L++ G I + +P +L
Sbjct: 191 QL---TVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELF 228
|
Length = 277 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.3 bits (146), Expect = 1e-09
Identities = 59/218 (27%), Positives = 106/218 (48%), Gaps = 15/218 (6%)
Query: 1264 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRT 1323
V+ +S T + G++G G+GK+T + IV AG I+ID DISL+ LH R
Sbjct: 18 VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHA-RA 76
Query: 1324 RLSI--IPQDPVMFEG-TVRSNVDPLEEYTDEQIWEALDKCQLGDEVRK--KEGKLDSKV 1378
R I +PQ+ +F +V N+ + QI + L Q D + +E ++
Sbjct: 77 RRGIGYLPQEASIFRRLSVYDNLMAV-----LQIRDDLSAEQREDRANELMEEFHIEHLR 131
Query: 1379 TENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSD--CTV 1436
G++ S G+R+ V + R L K ++LDE A VD + I++ + +H D V
Sbjct: 132 DSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRII-EHLRDSGLGV 190
Query: 1437 ITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLENK 1473
+ H + + + ++S G + + +P ++L+++
Sbjct: 191 LITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQDE 228
|
Length = 241 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 1e-09
Identities = 51/209 (24%), Positives = 101/209 (48%), Gaps = 29/209 (13%)
Query: 1279 GIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIG-LHDLRTRLSIIPQDP----- 1332
I+GR GSGKST+ + + ++ P+ G++ +DG+D S L D+R + ++ Q+P
Sbjct: 40 VILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIV 99
Query: 1333 -------VMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENW 1385
V F G + P E E++ E+L K + E R+ L
Sbjct: 100 ATIVEEDVAF-GPENLGIPPEE--IRERVDESLKKVGMY-EYRRHAPHL----------L 145
Query: 1386 SMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQ--HFSDCTVITIAHRI 1443
S GQ+Q V + +L R + ++ DE TA +D + + ++++ T+I I H +
Sbjct: 146 SGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYM 205
Query: 1444 TSVIDSDMVLLLSHGLIEEYDSPRKLLEN 1472
+++D ++++ G + +P+++ +
Sbjct: 206 EEAVEADRIIVMDSGKVVMEGTPKEIFKE 234
|
Length = 280 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 1e-09
Identities = 49/224 (21%), Positives = 100/224 (44%), Gaps = 33/224 (14%)
Query: 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1307
+++ ++ R+ L IS + + G++G G+GK+T I+ + I+ P +G++L
Sbjct: 1 LEVENVTKRFGRVT--ALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVL 58
Query: 1308 IDGIDISLIGLHDLRTRLSIIP-----------QDPVMFEGTVRSNVDPLEEYTDEQIWE 1356
DG + + R R+ +P D +++ ++ + E +I E
Sbjct: 59 FDGKPLDI----AARNRIGYLPEERGLYPKMKVIDQLVYLAQLK-GLKK--EEARRRIDE 111
Query: 1357 ALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVD 1416
L++ +L + ++ E S G +Q V ++ ++L+LDE + +D
Sbjct: 112 WLERLELSE---YANKRV--------EELSKGNQQKVQFIAAVIHDPELLILDEPFSGLD 160
Query: 1417 TATDNLIQQSLR-QHFSDCTVITIAHRITSVID-SDMVLLLSHG 1458
L++ +R + TVI H++ V + D VLLL+ G
Sbjct: 161 PVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKG 204
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 1e-09
Identities = 57/204 (27%), Positives = 96/204 (47%), Gaps = 25/204 (12%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSG 695
L DI+ V G + G G+GK++ + ILG + SG + G + + + G
Sbjct: 16 LDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKP--LDIAARNRIG 73
Query: 696 KI-EDNILFGKE--MDRERYNAVL------DACS-----LEKDLEILSFGDQTVVGERGI 741
+ E+ L+ K +D+ Y A L +A LE+ LE+ + ++ V
Sbjct: 74 YLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLER-LELSEYANKRVE----- 127
Query: 742 NLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL-NSKTVLYVTH 800
LS G +Q++Q A+ D ++ + D+PFS +D L K+V+ L KTV+ TH
Sbjct: 128 ELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDP-VNVELLKDVIRELARAGKTVILSTH 186
Query: 801 QVEFLPA-ADLVLVIKDGKITQAG 823
Q+E + D VL++ G+ G
Sbjct: 187 QMELVEELCDRVLLLNKGRAVLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 2e-09
Identities = 41/117 (35%), Positives = 61/117 (52%), Gaps = 4/117 (3%)
Query: 686 VAQSPWIQSGKIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQTV--VGERGINL 743
V Q P + I +NI F E + VLD +E L+ + DQ + + + L
Sbjct: 106 VFQRPNPFAKSIYENITFALERAGVKDKKVLDEI-VETSLKQAALWDQVKDDLHKSALTL 164
Query: 744 SGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTH 800
SGGQ+QR+ IARA+ DI L D+P SA+D + L +E + L + T++ VTH
Sbjct: 165 SGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQL-EETMFELKKNYTIIIVTH 220
|
Length = 267 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 59.4 bits (145), Expect = 2e-09
Identities = 51/219 (23%), Positives = 94/219 (42%), Gaps = 24/219 (10%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-----------KA 684
L D++ V G + G G+GK++L + I G + SG++ G +
Sbjct: 16 LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARL 75
Query: 685 YVA---QSPWI-QSGKIEDNILFGKEMDRERYNAVLDACSLEKDL-----EILSF-GDQT 734
+ Q P + + +N++ + + A E++ E+L G
Sbjct: 76 GIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLAD 135
Query: 735 VVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL-LNSK 793
+ LS GQ++R++IARAL D + L D+P + + + E++ L
Sbjct: 136 LADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGL-NPEETEELAELIRELRERGI 194
Query: 794 TVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYTDVINS 831
TVL V H ++ + + AD V V+ G++ G +V N+
Sbjct: 195 TVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRNN 233
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 2e-09
Identities = 57/186 (30%), Positives = 88/186 (47%), Gaps = 16/186 (8%)
Query: 1248 IDLRDLQVRYAPHMPFVLRGISC-TFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQI 1306
ID R+++ RY + V+ G+S GE G++G G+GK+T ++ L + P AG I
Sbjct: 8 IDFRNVEKRYGDKL--VVDGLSFHVQRGEC-FGLLGPNGAGKTTTLRMLLGLTHPDAGSI 64
Query: 1307 LIDGIDISLIGLHDLRTRLSIIPQ----DPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQ 1362
+ G + H R R+ ++PQ DP + TVR N+ Y A
Sbjct: 65 SLCGEPVPSRARH-ARQRVGVVPQFDNLDP---DFTVRENLLVFGRYFGLSAAAARALVP 120
Query: 1363 LGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNL 1422
E K E K D+KV E S G ++ + L R L+ +L+LDE T +D +L
Sbjct: 121 PLLEFAKLENKADAKVGE----LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHL 176
Query: 1423 IQQSLR 1428
+ + LR
Sbjct: 177 MWERLR 182
|
Length = 306 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 2e-09
Identities = 51/221 (23%), Positives = 101/221 (45%), Gaps = 31/221 (14%)
Query: 629 ISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK----- 683
S ++DI+ V G + G VGSG++ L++C+ G + G ++L G
Sbjct: 272 TSRDRKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRS 331
Query: 684 ---------AYVAQSP----WIQSGKIEDNILFGKEMDRERY-------NAVLDACSLEK 723
AY+ +S + + I N+ + + Y + V + + E
Sbjct: 332 PLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAEN 391
Query: 724 DLEILSFGDQTVVGERGIN-LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLF 782
E+L+ +V + I LSGG +Q++ I++ L ++ +FD+P +D + ++
Sbjct: 392 QRELLALKCHSV--NQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIY 449
Query: 783 KEVLLGLLNS-KTVLYVTHQV-EFLPAADLVLVIKDGKITQ 821
K V+ L + K +L V+ ++ E + D + V +G++TQ
Sbjct: 450 K-VMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQ 489
|
Length = 510 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 2e-09
Identities = 61/203 (30%), Positives = 90/203 (44%), Gaps = 34/203 (16%)
Query: 1264 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRT 1323
VL +S K ++G G+GKSTL++ + +V P G I + +
Sbjct: 19 VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIK-----------RNGKL 67
Query: 1324 RLSIIPQ----DPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVT 1379
R+ +PQ D + TV + E I AL + Q G + KL
Sbjct: 68 RIGYVPQKLYLDTTL-PLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKL----- 121
Query: 1380 ENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDT----ATDNLIQQSLRQHFSDCT 1435
S G+ Q V L R LL R ++L+LDE T VD A +LI Q LR+ DC
Sbjct: 122 ------SGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQ-LRREL-DCA 173
Query: 1436 VITIAHRITSVI-DSDMVLLLSH 1457
V+ ++H + V+ +D VL L+H
Sbjct: 174 VLMVSHDLHLVMAKTDEVLCLNH 196
|
Length = 251 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.5 bits (145), Expect = 2e-09
Identities = 50/221 (22%), Positives = 92/221 (41%), Gaps = 39/221 (17%)
Query: 1264 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRT 1323
+ +S + G++G G+GK+TL + +P++G ++ G DI+ + H
Sbjct: 19 AVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPH-RIA 77
Query: 1324 RLSI-----IPQ--------DPVMFEGTVRSNVDPL---------EEYTDEQIWEALDKC 1361
RL I I + + V R + L E E+ E L+
Sbjct: 78 RLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFV 137
Query: 1362 QLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASV-DTATD 1420
LG+ N S GQ++ + + R L + K+L+LDE A + T+
Sbjct: 138 GLGE-----------LADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETE 186
Query: 1421 NLIQ--QSLRQHFSDCTVITIAHRITSVID-SDMVLLLSHG 1458
L + + LR T++ I H + V+ +D +++L++G
Sbjct: 187 ELAELIRELRDRG-GVTILLIEHDMKLVMGLADRIVVLNYG 226
|
Length = 250 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 3e-09
Identities = 58/226 (25%), Positives = 103/226 (45%), Gaps = 38/226 (16%)
Query: 633 NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSC---ILGEVP--KISGTLKLCGTKAY-- 685
L DINL ++ A G G GKS+ L C + VP K+ G L + G Y
Sbjct: 18 KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSV 77
Query: 686 -------------VAQSPWIQSGKIEDNILFGKEM-----DRERYNAVLDACSLEKDLEI 727
V Q P I DN+ +G ++ ++++ + ++ EK L
Sbjct: 78 DTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIV-----EKSLTS 132
Query: 728 LSFGDQTVVGER----GINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFK 783
+ ++ +G+R LSGGQ+QR+ IARA+ + L D+P SA+D +++ +
Sbjct: 133 VGLWEE--LGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDP-VATNVIE 189
Query: 784 EVLLGLLNSKTVLYVTHQV-EFLPAADLVLVIKDGKITQAGKYTDV 828
++ L + T++ VTH + + +D V + G+I + ++
Sbjct: 190 NLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEI 235
|
Length = 251 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 3e-09
Identities = 60/248 (24%), Positives = 112/248 (45%), Gaps = 31/248 (12%)
Query: 1247 KIDLRDLQVRYAPHMPF---VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAA 1303
I ++ Y P+ + ++ F K IVG+TGSGKSTLIQ + +++P
Sbjct: 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTT 61
Query: 1304 GQILIDGIDISLIG----LHDLRTRLSIIPQDP--VMFEGTVRSNVD--------PLEEY 1349
G + +D I I+ + +R R+ ++ Q P +FE TV + L+E
Sbjct: 62 GTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEV 121
Query: 1350 TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLD 1409
+ + LG ++++ S GQ + + + +L I++LD
Sbjct: 122 KNYAHRLLM---DLGFS--------RDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLD 170
Query: 1410 EATASVDTATDNLIQQSLR--QHFSDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSP 1466
E TA +D + + + L+ Q + T+I ++H + V +D V+++ G I SP
Sbjct: 171 EPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSP 230
Query: 1467 RKLLENKS 1474
++L ++K
Sbjct: 231 KELFKDKK 238
|
Length = 286 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 4e-09
Identities = 52/188 (27%), Positives = 85/188 (45%), Gaps = 25/188 (13%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCI-----LGEVPKISGTLKLCGTKAY----- 685
L D++L + A G G GKS+ L C+ + +++G + L G Y
Sbjct: 35 LFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLD 94
Query: 686 ----------VAQSPWIQSGKIEDNILFGKEMD-RERYNAVLDACSLEKDLEILSFGDQT 734
V Q P I +N+ +G + R A LD +E L ++
Sbjct: 95 VVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEI-VETSLRKAGLWEEV 153
Query: 735 V--VGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNS 792
+ E G LSGGQ+QR+ IARA+ ++ L D+P SA+D + + +E++ L +
Sbjct: 154 KDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKV-EELIDELRQN 212
Query: 793 KTVLYVTH 800
T++ VTH
Sbjct: 213 YTIVIVTH 220
|
Length = 267 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 4e-09
Identities = 57/205 (27%), Positives = 94/205 (45%), Gaps = 18/205 (8%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK-AYVA--QSP 690
+ D++L ++ G A+ G G GKS+LL + G +G + L G ++V Q P
Sbjct: 33 HAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRP 92
Query: 691 ---WIQS------GKIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGI 741
QS +E NI FG + D+ + + + L ++ Q +
Sbjct: 93 INMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIAS--RVNEMLGLVHM--QEFAKRKPH 148
Query: 742 NLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLN-SKTVLYVTH 800
LSGGQ+QR+ +AR+L + + L D+P A+D + EV+ L T + VTH
Sbjct: 149 QLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTH 208
Query: 801 -QVEFLPAADLVLVIKDGKITQAGK 824
Q E + A + ++ GK Q G+
Sbjct: 209 DQEEAMTMAGRIAIMNRGKFVQIGE 233
|
Length = 377 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 5e-09
Identities = 54/226 (23%), Positives = 89/226 (39%), Gaps = 30/226 (13%)
Query: 626 SWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK-- 683
SW + +++ G + G GSGKS+LL + G + +GT+ L G
Sbjct: 8 SWSAGGR-LIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLH 66
Query: 684 -----------AYVAQ-SPWIQSGKIEDNILFGKEMDRERY-------NAVLDACSLEKD 724
A V Q S + D + G+ R + AV+D
Sbjct: 67 GLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRAL--AR 124
Query: 725 LEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKE 784
E+ D+ + LSGG++QR+ +ARAL Q+ + L D+P + +D
Sbjct: 125 TELSHLADRDMS-----TLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLAL 179
Query: 785 VLLGLLNSKTVLYVTHQVEF-LPAADLVLVIKDGKITQAGKYTDVI 829
V TV+ H + D V+V+ G++ AG +V+
Sbjct: 180 VRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVL 225
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.5 bits (141), Expect = 5e-09
Identities = 53/218 (24%), Positives = 99/218 (45%), Gaps = 40/218 (18%)
Query: 614 SETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCI-----LG 668
++ I++ + N + LK++++++ A+ G G GKS+ + C+ L
Sbjct: 9 AQPQIKVENLNLWY---GEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLI 65
Query: 669 EVPKISGTLKLCGTKAY---------------VAQSPWIQSGKIEDNILFG--------K 705
+ +I G + + G Y V Q P I DN+ +G K
Sbjct: 66 KNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKK 125
Query: 706 EMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYL 765
++D NA+ A ++ + L ++LSGGQ+QR+ IAR L I L
Sbjct: 126 DLDGVVENALRSAALWDETSDRLK--------SPALSLSGGQQQRLCIARTLAVKPKIIL 177
Query: 766 FDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVE 803
FD+P SA+D + + + +++++ L T++ VTH ++
Sbjct: 178 FDEPTSALDPISTARI-EDLIMNLKKDYTIVIVTHNMQ 214
|
Length = 258 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 5e-09
Identities = 47/154 (30%), Positives = 73/154 (47%), Gaps = 39/154 (25%)
Query: 1280 IVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSIIPQDPV--MFEG 1337
++G +G GKSTL++ L +P AGQI++DG+D+S + + Q P+ MF+
Sbjct: 50 LLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPY----------QRPINMMFQS 99
Query: 1338 -------TVRSNVD--------PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENG 1382
TV N+ P E ++ E L + + ++K +L
Sbjct: 100 YALFPHMTVEQNIAFGLKQDKLPKAEIAS-RVNEMLGLVHMQEFAKRKPHQL-------- 150
Query: 1383 ENWSMGQRQLVCLGRVLLKRRKILMLDEATASVD 1416
S GQRQ V L R L KR K+L+LDE ++D
Sbjct: 151 ---SGGQRQRVALARSLAKRPKLLLLDEPMGALD 181
|
Length = 377 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.0 bits (142), Expect = 5e-09
Identities = 67/242 (27%), Positives = 109/242 (45%), Gaps = 28/242 (11%)
Query: 1248 IDLRDLQVRYAPHMPFVLRG---ISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAG 1304
I + Y P+ PF R I T ++G TGSGKSTL+Q L +++P G
Sbjct: 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEG 61
Query: 1305 QILIDGIDISLIG----LHDLRTRLSIIPQDP--VMFEGTVRSNV--DPL-----EEYTD 1351
++ + I +S + +R ++ ++ Q P +FE TV +V P +E +
Sbjct: 62 KVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAE 121
Query: 1352 EQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEA 1411
+ E L+ L DE +K + S GQ + V + +L ++L+LDE
Sbjct: 122 KIAAEKLEMVGLADEFWEK----------SPFELSGGQMRRVAIAGILAMEPEVLVLDEP 171
Query: 1412 TASVD-TATDNLIQQSLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKL 1469
TA +D A ++Q H S TV+ + H + V D +D V LL G I +P +
Sbjct: 172 TAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDV 231
Query: 1470 LE 1471
+
Sbjct: 232 FQ 233
|
Length = 288 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 58.0 bits (140), Expect = 5e-09
Identities = 47/157 (29%), Positives = 80/157 (50%), Gaps = 23/157 (14%)
Query: 1273 PGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHD---LRTRLSIIP 1329
PGE + G +G+GKSTL++ + I P+AG+I G DI+ + + LR ++ +I
Sbjct: 27 PGEMAF-LTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIF 85
Query: 1330 QD-PVMFEGTVRSNVD-PL------EEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTEN 1381
QD ++ + TV NV PL + ++ ALDK L D+ + +L
Sbjct: 86 QDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQL------- 138
Query: 1382 GENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTA 1418
S G++Q V + R ++ + +L+ DE T ++D A
Sbjct: 139 ----SGGEQQRVGIARAVVNKPAVLLADEPTGNLDDA 171
|
Length = 222 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 6e-09
Identities = 46/190 (24%), Positives = 75/190 (39%), Gaps = 45/190 (23%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSG 695
++ + G + + G GSGK++LL I G +P +GT+KL G
Sbjct: 18 FSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDG-------------- 63
Query: 696 KIEDNILFGKEMDRERYNAVLDACSLEKD----LEILSF------GDQTVVGE------- 738
+I + Y +A K E L F G++ +
Sbjct: 64 ---GDIDDPDVAEACHYLGHRNAM---KPALTVAENLEFWAAFLGGEELDIAAALEAVGL 117
Query: 739 ------RGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNS 792
LS GQK+R+ +AR L + I++ D+P +A+DA + LF E++ L
Sbjct: 118 APLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVA-LFAELIRAHLAQ 176
Query: 793 K-TVLYVTHQ 801
V+ TH
Sbjct: 177 GGIVIAATHI 186
|
Length = 207 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 6e-09
Identities = 62/230 (26%), Positives = 101/230 (43%), Gaps = 37/230 (16%)
Query: 618 IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTL 677
IE D +S+ S L +IN R+AV G G+GKS+L G + SG++
Sbjct: 4 IETRDLCYSYSGSKE--ALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSV 61
Query: 678 KLCG---TKA----------YVAQSP--WIQSGKIEDNILFG-------KEMDRERYNAV 715
+ G TK V Q+P I S +E +I FG +E R ++
Sbjct: 62 LIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSA 121
Query: 716 LDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDA 775
L LE+ + + +LSGG+K+R+ IA + + + + D+P + +D
Sbjct: 122 LHMLGLEELRDRVPH-----------HLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDP 170
Query: 776 HTGSHLFKEV-LLGLLNSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAG 823
L + L TV++ THQ++ +P AD + V+ G+I G
Sbjct: 171 QGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYG 220
|
Length = 277 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.5 bits (141), Expect = 6e-09
Identities = 55/242 (22%), Positives = 104/242 (42%), Gaps = 28/242 (11%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCI-----LGEVPKISGTLKLCGTKAY----- 685
++D ++ + G G GKS++L + L + + G + G Y
Sbjct: 24 VRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVD 83
Query: 686 ----------VAQSPWIQSGKIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQTV 735
V Q P S I DN+ FG ++R + + ++ L+ + D+
Sbjct: 84 PVVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDL---GDRVKHALQGAALWDEVK 140
Query: 736 --VGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSK 793
+ G++LSGGQ+QR+ IARA+ + ++ L D+P SA+D + +E+++ L
Sbjct: 141 DKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDP-IATRRVEELMVELKKDY 199
Query: 794 TVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVINSGTDFMELVDAHKQALSTLDSIE 853
T+ VTH ++ I+Q + ++ G ++ ++ L T D I
Sbjct: 200 TIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMG-PTAQIFQNPREQL-TSDYIS 257
Query: 854 GR 855
G+
Sbjct: 258 GK 259
|
Length = 261 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 7e-09
Identities = 54/205 (26%), Positives = 82/205 (40%), Gaps = 50/205 (24%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSG 695
LK +NL + G A+ G GSGKS+L I+G PK + G
Sbjct: 16 LKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMG-HPKYE-----------------VTEG 57
Query: 696 KI---EDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINL--------- 743
+I ++I + ER + L+F Q G+
Sbjct: 58 EILFKGEDITD-LPPE-ERARLGI----------FLAF--QYPPEIPGVKNADFLRYVNE 103
Query: 744 --SGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKT-VLYVTH 800
SGG+K+R +I + L + D+ + D+P S +D L EV+ L VL +TH
Sbjct: 104 GFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDI-DALRLVAEVINKLREEGKSVLIITH 162
Query: 801 QVEFL--PAADLVLVIKDGKITQAG 823
L D V V+ DG+I ++G
Sbjct: 163 YQRLLDYIKPDRVHVLYDGRIVKSG 187
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 8e-09
Identities = 68/231 (29%), Positives = 100/231 (43%), Gaps = 53/231 (22%)
Query: 1250 LRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILID 1309
L + RY VL + P + +VGR+G GKSTL++ L + P+AG++L
Sbjct: 15 LNAVSKRYGERT--VLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAG 72
Query: 1310 GIDISLIGLHDLR--TRLSIIPQDPVMFEG-------TVRSNVD-PLEEYTDEQIWEALD 1359
L + R TRL MF+ V NV L+ + +AL
Sbjct: 73 TAP-----LAEAREDTRL--------MFQDARLLPWKKVIDNVGLGLKGQWRDAALQALA 119
Query: 1360 KCQLGDEVRKKEGKLDSKVTENGENW----SMGQRQLVCLGRVLLKRRKILMLDEATASV 1415
L D R E W S GQ+Q V L R L+ R +L+LDE ++
Sbjct: 120 AVGLAD--RANE-------------WPAALSGGQKQRVALARALIHRPGLLLLDEPLGAL 164
Query: 1416 DTAT----DNLIQQSLRQH-FSDCTVITIAHRIT-SVIDSDMVLLLSHGLI 1460
D T +LI+ +QH F TV+ + H ++ +V +D VLL+ G I
Sbjct: 165 DALTRIEMQDLIESLWQQHGF---TVLLVTHDVSEAVAMADRVLLIEEGKI 212
|
Length = 257 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 8e-09
Identities = 47/178 (26%), Positives = 84/178 (47%), Gaps = 12/178 (6%)
Query: 1273 PGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDG-IDISLIGLHDLRTRLSIIP-- 1329
PGE + ++G G+GK+TL+ + P G++L DG D++ + H R I
Sbjct: 30 PGELRV-LIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHR-IARAGIGRKF 87
Query: 1330 QDPVMFEG-TVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEG-----KLDSKVTENGE 1383
Q P +FE TVR N++ L D+ ++ +L +E R+ + L +
Sbjct: 88 QKPTVFENLTVRENLE-LALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAA 146
Query: 1384 NWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAH 1441
S GQ+Q + +G +L + K+L+LDE A + A + L+ +++ + H
Sbjct: 147 LLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEH 204
|
Length = 249 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 9e-09
Identities = 36/89 (40%), Positives = 53/89 (59%), Gaps = 13/89 (14%)
Query: 743 LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVL--LGLL--NSKTVLYV 798
LSGGQ+QR+ IARAL + ++ LFD+P SA+D L EVL + L +T++ V
Sbjct: 153 LSGGQQQRVAIARALAMEPEVMLFDEPTSALD----PELVGEVLKVMQDLAEEGRTMVVV 208
Query: 799 THQVEFLPAADL---VLVIKDGKITQAGK 824
TH++ F A D+ V+ + GKI + G
Sbjct: 209 THEMGF--ARDVSSHVIFLHQGKIEEEGP 235
|
Length = 256 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 9e-09
Identities = 53/201 (26%), Positives = 85/201 (42%), Gaps = 33/201 (16%)
Query: 633 NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK--------- 683
L +I+ + G + G G GKS+LL + + SGTL G
Sbjct: 20 AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIY 79
Query: 684 ----AYVAQSPWIQSGKIEDNILF-----GKEMDRERYNAVLDACSLEKDLEILSFGDQT 734
+Y AQ+P + + DN++F ++ D + L+ +L IL
Sbjct: 80 RQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFAL--PDTIL------ 131
Query: 735 VVGERGIN-LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSK 793
+ I LSGG+KQRI + R L + L D+ SA+D H E++ + +
Sbjct: 132 ---TKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESN-KHNVNEIIHRYVREQ 187
Query: 794 --TVLYVTHQVEFLPAADLVL 812
VL+VTH + + AD V+
Sbjct: 188 NIAVLWVTHDKDEINHADKVI 208
|
Length = 225 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 9e-09
Identities = 70/268 (26%), Positives = 118/268 (44%), Gaps = 58/268 (21%)
Query: 1264 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTL--FRIVEPAAGQIL-------------- 1307
VL+ IS T + GI+GR+G+GKS L+ L EP +G+I+
Sbjct: 15 VLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVER 74
Query: 1308 --------------IDGIDISLIGLHD-----LRTRLSIIPQDPVMFEG--TVRSNV-DP 1345
++ ++ L D +R R++I+ Q G TV NV +
Sbjct: 75 PSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEA 134
Query: 1346 LEE--YT-DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKR 1402
LEE Y E + A+D L + V +L ++T + S G++Q V L R L K
Sbjct: 135 LEEIGYEGKEAVGRAVD---LIEMV-----QLSHRITHIARDLSGGEKQRVVLARQLAKE 186
Query: 1403 RKILMLDEATASVDTATDNLIQQSLRQHF--SDCTVITIAHRITSVID--SDMVLLLSHG 1458
+ + DE T ++D T L+ +L + S +++ +H VI+ SD + L +G
Sbjct: 187 PFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSH-WPEVIEDLSDKAIWLENG 245
Query: 1459 LIEEYDSPRKLLENKSSSFSQLVAEYTQ 1486
I+E +P + + F + V+E +
Sbjct: 246 EIKEEGTP----DEVVAVFMEGVSEVEK 269
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 1e-08
Identities = 62/252 (24%), Positives = 108/252 (42%), Gaps = 43/252 (17%)
Query: 614 SETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILG-EVPK 672
+ I + +F + S + TLKD++ + G ++ G GSGKS++ ++G E K
Sbjct: 4 KNSIIVFKNVSFQYQ-SDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVK 62
Query: 673 ISGTL-------------KLCGTKAYVAQSPWIQ-SGKI---------EDNILFGKEMDR 709
SG + KL V Q+P Q G I E++ + EM
Sbjct: 63 -SGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEM-H 120
Query: 710 ERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDP 769
R + L K +++L D LSGGQKQR+ IA L + + + D+
Sbjct: 121 RRVSEAL------KQVDMLERAD-----YEPNALSGGQKQRVAIAGVLALNPSVIILDEA 169
Query: 770 FSAVDAHTGSHLFKEVLLGLLNSK---TVLYVTHQVEFLPAADLVLVIKDGKITQAGKYT 826
S +D +L L+ + S+ T++ +TH + AD V+V+ G + + G T
Sbjct: 170 TSMLDPDARQNLLD--LVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPT 227
Query: 827 DVINSGTDFMEL 838
++ + + +
Sbjct: 228 EIFDHAEELTRI 239
|
Length = 269 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.7 bits (139), Expect = 1e-08
Identities = 50/222 (22%), Positives = 103/222 (46%), Gaps = 22/222 (9%)
Query: 1235 ESRPNHSWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQT 1294
+S P H ++ ++V Y + V + P +K +G +G GKSTL++
Sbjct: 8 QSDSATINPDHSVFEVEGVKVFYGGFLALV--DVHLKIPAKKIIAFIGPSGCGKSTLLRC 65
Query: 1295 LFRIVE--PAA---GQILIDGIDI--SLIGLHDLRTRLSIIPQDPVMFEGTVRSNV---- 1343
R+ + P A G++L +I S I LR ++ ++ Q P F ++ N+
Sbjct: 66 FNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPKSIYENIAFAP 125
Query: 1344 --DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLK 1401
+ + DE + ++L + + +EV+ K+ E G S GQ+Q +C+ R +
Sbjct: 126 RANGYKGNLDELVEDSLRRAAIWEEVK-------DKLKEKGTALSGGQQQRLCIARAIAM 178
Query: 1402 RRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRI 1443
+ +L++DE +++D + +++ + T+I + H +
Sbjct: 179 KPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNM 220
|
Length = 274 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 1e-08
Identities = 58/217 (26%), Positives = 95/217 (43%), Gaps = 40/217 (18%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKL------CGTKA----- 684
L D+N+ + G VA+ G GSGKS+LL + G + SGT+ + G K
Sbjct: 23 LYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82
Query: 685 ------YVAQSPWIQ--SGKIEDNILFG-------KEMDRERYNAVLDACSLEKDLEILS 729
V Q P Q +E +I FG +E +++ +++ L ++L S
Sbjct: 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARS 142
Query: 730 FGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL 789
+ LSGGQ +R+ IA L + ++ + D+P + +D G E+ L
Sbjct: 143 PFE----------LSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPK-GRKEMMEMFYKL 191
Query: 790 LNSK--TVLYVTHQVEFLPA-ADLVLVIKDGKITQAG 823
K T + VTH +E AD ++V+ G + G
Sbjct: 192 HKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQG 228
|
Length = 290 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 1e-08
Identities = 56/225 (24%), Positives = 95/225 (42%), Gaps = 36/225 (16%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG------TK------ 683
+ D+N + G A+ G GSGKS+L+ I + +GT+ + TK
Sbjct: 23 IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82
Query: 684 -----AYVAQSPWIQ--SGKIEDNILFGKE---MDRERYNAVLDACSLEKDLEILSFG-D 732
V Q P Q +E I+FG + M+ + A L ++ G
Sbjct: 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKN--YAHRL-----LMDLGFS 135
Query: 733 QTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSH---LFKEVLLGL 789
+ V+ + +SGGQ ++I I L + DI + D+P + +D + L K L
Sbjct: 136 RDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKS--LQT 193
Query: 790 LNSKTVLYVTHQV-EFLPAADLVLVIKDGKITQAGKYTDVINSGT 833
+KT++ V+H + E AD V+V+K+G I ++
Sbjct: 194 DENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKDKK 238
|
Length = 286 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 1e-08
Identities = 60/220 (27%), Positives = 103/220 (46%), Gaps = 55/220 (25%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT---KAYVAQSPWI 692
L I+L+V G V +CG G+GKS+L+ + G P GT + Y + SP +
Sbjct: 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYP--------HGTWDGEIYWSGSP-L 67
Query: 693 QSGKIED-----------------------NILFGKEM----DRERYNAVLDAC-SLEKD 724
++ I D NI G E+ R YNA+ +L ++
Sbjct: 68 KASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRE 127
Query: 725 LEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKE 784
L++ + VG+ G GGQ+Q ++IA+AL + A + + D+P S++ E
Sbjct: 128 LQLDADNVTRPVGDYG----GGQQQLVEIAKALNKQARLLILDEPSSSLTEKE-----TE 178
Query: 785 VLLGL---LNSKTV--LYVTHQVEFLPA-ADLVLVIKDGK 818
+LL + L + V +Y++H++ + A D + VI+DG+
Sbjct: 179 ILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQ 218
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 1e-08
Identities = 58/222 (26%), Positives = 103/222 (46%), Gaps = 45/222 (20%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPK---ISGTLKLCGTK--------- 683
LK+++ G +AV G+ G+GK++L++ + PK SG++ L G
Sbjct: 41 LKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAI 100
Query: 684 -AYVAQSP-WIQSGKIEDNILF----------GKEMDRERYNAVLDACSLEKDLEILSFG 731
AYV Q +I + + ++++F K+ RER + VL A L K
Sbjct: 101 SAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRK-------C 153
Query: 732 DQTVVGERGI--NLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL 789
T +G G LSGG+++R+ A L D + D+P S +D+ + + VL GL
Sbjct: 154 ANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQ-VLKGL 212
Query: 790 LNS-KTVLYVTHQVEFLPAADL------VLVIKDGKITQAGK 824
KT++ HQ P+++L ++++ +G++ G
Sbjct: 213 AQKGKTIICTIHQ----PSSELFELFDKIILMAEGRVAYLGS 250
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.7 bits (143), Expect = 1e-08
Identities = 36/89 (40%), Positives = 53/89 (59%), Gaps = 4/89 (4%)
Query: 743 LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEV--LLGLLNSKTVLYVTH 800
LSGGQ+QR+ + RA+ ++ ++LFD+P S +DA + E+ L L + T LYVTH
Sbjct: 135 LSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKT-TSLYVTH 193
Query: 801 -QVEFLPAADLVLVIKDGKITQAGKYTDV 828
QVE + AD V+V+ G Q G +V
Sbjct: 194 DQVEAMTLADRVVVMNGGVAEQIGTPVEV 222
|
Length = 356 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 1e-08
Identities = 48/205 (23%), Positives = 89/205 (43%), Gaps = 47/205 (22%)
Query: 1264 VLRGISCT-FPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILI----DGIDISLIGL 1318
VL+ +S T GE + G +G+GKSTL+++L+ P +G+IL+ +D++
Sbjct: 23 VLKNVSLTVNAGEC-VALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81
Query: 1319 HD---LRTR--------LSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEV 1367
+ +R + L +IP+ S ++ + E E+ +
Sbjct: 82 REVLEVRRKTIGYVSQFLRVIPR---------VSALEVVAEPLLERGVPR-------EAA 125
Query: 1368 RKKEGKLDSKVTENGENWSM-------GQRQLVCLGRVLLKRRKILMLDEATASVDTATD 1420
R + +L +++ W + G++Q V + R + IL+LDE TAS+D A
Sbjct: 126 RARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANR 185
Query: 1421 ----NLIQQSLRQHFSDCTVITIAH 1441
LI ++ + +I I H
Sbjct: 186 QVVVELIAEAKAR---GAALIGIFH 207
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 1e-08
Identities = 49/200 (24%), Positives = 79/200 (39%), Gaps = 35/200 (17%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVP---KISGTLKLCGTK--------- 683
L ++N + G V + G G GKS+LLS ++G + +G L L +
Sbjct: 18 LANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQR 77
Query: 684 --AYVAQSPWI-QSGKIEDNILFGKEMD---RERYNAVLDACSLEK---DLEILSFGDQT 734
+ Q + + N+LF R NA A LE+ D
Sbjct: 78 QIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAA--LERSGLDGAFHQDPAT- 134
Query: 735 VVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKT 794
LSGGQ+ R+ + RAL L D+PFS +D F++ + + +
Sbjct: 135 --------LSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQ-FRQWVFSEVRAAG 185
Query: 795 --VLYVTHQVEFLPAADLVL 812
+ VTH ++ +PA V+
Sbjct: 186 IPTVQVTHDLQDVPAGSRVI 205
|
Length = 213 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 1e-08
Identities = 58/212 (27%), Positives = 90/212 (42%), Gaps = 37/212 (17%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK---------- 683
LK + L V G VA+ G GSGKS+LL+ + G SG ++L G
Sbjct: 24 SILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARA 83
Query: 684 -------AYVAQS-PWIQSGKIEDNI-----LFGKEMDRERYNAVLDACSLEKDLEILSF 730
+V QS I + +N+ L G+ R A + LE +
Sbjct: 84 ALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGA-------KALLEAVGL 136
Query: 731 GDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL 790
G + + LSGG++QR+ +ARA D+ D+P +D TG + LL L
Sbjct: 137 GKR--LTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIAD--LLFAL 192
Query: 791 NSK---TVLYVTHQVEFLPAADLVLVIKDGKI 819
N + T++ VTH + D L ++ G++
Sbjct: 193 NRERGTTLVLVTHDPQLAARCDRQLRLRSGRL 224
|
Length = 228 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.7 bits (139), Expect = 1e-08
Identities = 60/249 (24%), Positives = 111/249 (44%), Gaps = 34/249 (13%)
Query: 1246 GKIDLRDLQVRYAPHMPFVLRGI---SCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPA 1302
I L ++ YA PF + + S TF K T ++G TGSGKST+IQ ++
Sbjct: 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISE 64
Query: 1303 AGQILIDGIDI-----SLIGLHDLRTRLSIIPQDP--VMFEGTVRSNV--DPLEEYTDEQ 1353
GQ ++ I + + LR + ++ Q P +F+ T+ ++ P+ ++Q
Sbjct: 65 TGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQ 124
Query: 1354 -----IWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILML 1408
+ E L QL ++ K+ + S GQ++ V L ++ L+L
Sbjct: 125 EAYKKVPELLKLVQLPEDYVKR----------SPFELSGGQKRRVALAGIIAMDGNTLVL 174
Query: 1409 DEATASVDTATD----NLIQQSLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGLIEEY 1463
DE T +D + NL ++ L + + +I + H + V+ +D V+++ G +
Sbjct: 175 DEPTGGLDPKGEEDFINLFER-LNKEYKK-RIIMVTHNMDQVLRIADEVIVMHEGKVISI 232
Query: 1464 DSPRKLLEN 1472
SP ++ N
Sbjct: 233 GSPFEIFSN 241
|
Length = 289 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 1e-08
Identities = 65/251 (25%), Positives = 104/251 (41%), Gaps = 48/251 (19%)
Query: 629 ISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSC--ILGEVP----KISGTLKLCG- 681
+ + P + ++L + G +A+ G GSGKS L+C LG +P + +G + L G
Sbjct: 12 LQAAQPLVHGVSLTLQRGRVLALVGGSGSGKS--LTCAAALGILPAGVRQTAGRVLLDGK 69
Query: 682 ----------TKAYVAQSP--------WIQSGKIEDNILFGKEMDRERYNAVLDACSLEK 723
A + Q+P + + E + GK D A L+A LE
Sbjct: 70 PVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLEN 129
Query: 724 DLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFK 783
+L +SGG QR+ IA AL +A + D+P + +D + +
Sbjct: 130 AARVLKL--------YPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARIL- 180
Query: 784 EVLLGLLNSKT--VLYVTHQ---VEFLPAADLVLVIKDGKITQAGKYTDVIN---SGTDF 835
++L ++ + +L VTH V L AD V V+ G+I + G + N
Sbjct: 181 DLLESIVQKRALGMLLVTHDMGVVARL--ADDVAVMSHGRIVEQGDVETLFNAPKHAVTR 238
Query: 836 MELVDAHKQAL 846
LV AH AL
Sbjct: 239 S-LVSAH-LAL 247
|
Length = 254 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 2e-08
Identities = 60/233 (25%), Positives = 94/233 (40%), Gaps = 63/233 (27%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK------------ 683
L D++L + G A+ G G GKS+LL C + SGT+ L
Sbjct: 18 LNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARR 77
Query: 684 -AYVAQ------------------SPWIQSGKIEDNILFGK--EMDRERYNAVLDACSLE 722
A + Q SPW+ L+G+ D R N +
Sbjct: 78 LALLPQHHLTPEGITVRELVAYGRSPWLS--------LWGRLSAEDNARVNQAM------ 123
Query: 723 KDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLF 782
+ I D+ + +LSGGQ+QR +A L QD + L D+P + +D + L
Sbjct: 124 EQTRINHLADRRLT-----DLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELM 178
Query: 783 KEVLLGLLNS--KTVLYVTHQVEFLPAA----DLVLVIKDGKITQAGKYTDVI 829
+ L+ LN+ KTV+ V H L A D ++V+ +G + G +V+
Sbjct: 179 R--LMRELNTQGKTVVTVLHD---LNQASRYCDHLVVLANGHVMAQGTPEEVM 226
|
Length = 255 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.9 bits (137), Expect = 2e-08
Identities = 49/190 (25%), Positives = 83/190 (43%), Gaps = 24/190 (12%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCI-----LGEVPKISGTLKLCGTK------- 683
+ DI++ + A+ G G GKS+ L I L + G + G
Sbjct: 37 VNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNIN 96
Query: 684 --------AYVAQSPWIQSGKIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQTV 735
V Q P I +NI + ER +VLD +E+ L + D+
Sbjct: 97 VVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDE-IVEESLTKAALWDEVK 155
Query: 736 --VGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSK 793
+ ++LSGGQ+QR+ IAR L + L D+P SA+D + + + +E++ L
Sbjct: 156 DRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKI-EELITELKEEY 214
Query: 794 TVLYVTHQVE 803
+++ VTH ++
Sbjct: 215 SIIIVTHNMQ 224
|
Length = 268 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 2e-08
Identities = 56/217 (25%), Positives = 93/217 (42%), Gaps = 48/217 (22%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG---TKAYVAQSP 690
L+D++ + G V + G G+GKS+LL I GE G + + G ++ + P
Sbjct: 16 EALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIP 75
Query: 691 W--------------IQSGKIEDNILF-----GKEMD--RERYNAVLDACSLEKDLEILS 729
+ + + +N+ GK R R + VLD L+ + +
Sbjct: 76 FLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKH--KARA 133
Query: 730 FGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGS---HLFKEV- 785
Q LSGG++QR+ IARA+ + L D+P +D LF+E+
Sbjct: 134 LPSQ---------LSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEIN 184
Query: 786 LLGLLNSKTVLYVTHQVEFLPAADL---VLVIKDGKI 819
LG TVL TH +E + + VL ++DG++
Sbjct: 185 RLGT----TVLMATHDLELV--NRMRHRVLALEDGRL 215
|
Length = 223 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 2e-08
Identities = 46/188 (24%), Positives = 75/188 (39%), Gaps = 39/188 (20%)
Query: 631 SHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKA--YVAQ 688
LKD++ ++ G R+ + G G+GKSSL + G P SG + + + ++ Q
Sbjct: 12 DGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQ 71
Query: 689 SPWIQSGKIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQK 748
P++ G +L E L + V LSGG++
Sbjct: 72 RPYLPLG------------------------TLR---EQLIYPWDDV-------LSGGEQ 97
Query: 749 QRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAA 808
QR+ AR L D+ SA+D + L+ ++L L TV+ V H+
Sbjct: 98 QRLAFARLLLHKPKFVFLDEATSALDEESEDRLY-QLLKELG--ITVISVGHRPSLWKFH 154
Query: 809 DLVLVIKD 816
D VL +
Sbjct: 155 DRVLDLDG 162
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.2 bits (138), Expect = 2e-08
Identities = 53/192 (27%), Positives = 84/192 (43%), Gaps = 28/192 (14%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCI-----LGEVPKISGTLKLCGTKAY----- 685
+K +N + A+ G G GKS+ L I L +G L G Y
Sbjct: 55 VKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114
Query: 686 ----------VAQSPWIQSGKIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQTV 735
V Q P I DNI +G + L+ +EK L + D+
Sbjct: 115 EVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEI-VEKSLRKAALWDE-- 171
Query: 736 VGER----GINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLN 791
V +R + LSGGQ+QR+ +AR L + +I L D+P SA+D + + ++++ L
Sbjct: 172 VSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKI-EDLIQELRG 230
Query: 792 SKTVLYVTHQVE 803
S T++ VTH ++
Sbjct: 231 SYTIMIVTHNMQ 242
|
Length = 286 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 2e-08
Identities = 40/112 (35%), Positives = 62/112 (55%), Gaps = 10/112 (8%)
Query: 697 IEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGER----GINLSGGQKQRIQ 752
I DN++ G +++ R LD +EK L + ++ V +R G LSGGQ+QR+
Sbjct: 102 IRDNVVAGLKLNGVRNKKDLDE-LVEKSLRGANLWNE--VKDRLDKPGGGLSGGQQQRLC 158
Query: 753 IARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSK-TVLYVTHQVE 803
IARA+ + D+ L D+P SA+D S L E L+ L T++ VTH ++
Sbjct: 159 IARAIAVEPDVLLMDEPCSALDPI--STLAIEDLINELKQDYTIVIVTHNMQ 208
|
Length = 258 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.9 bits (137), Expect = 2e-08
Identities = 45/185 (24%), Positives = 88/185 (47%), Gaps = 20/185 (10%)
Query: 1276 KKTGIVGRTGSGKSTLIQTLFRIVEPAAG-----QILIDGIDISLIGLHDL--RTRLSII 1328
+ TG +G +G GKST++++L R+ + G + G D+ G+ + R + ++
Sbjct: 35 EITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMV 94
Query: 1329 PQDPVMFEGTVRSNVD---PLEEYTD---EQIWEALDKCQLGDEVRKKEGKLDSKVTENG 1382
Q P F ++ NV L Y +++ AL L DEV+ K+ +G
Sbjct: 95 FQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVK-------DKLKVSG 147
Query: 1383 ENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHR 1442
+ S GQ+Q +C+ R + ++L+LDE +++D +++ + + D T+ + H
Sbjct: 148 LSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHN 207
Query: 1443 ITSVI 1447
+ I
Sbjct: 208 MQQAI 212
|
Length = 261 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.6 bits (136), Expect = 2e-08
Identities = 53/217 (24%), Positives = 94/217 (43%), Gaps = 30/217 (13%)
Query: 632 HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILG----------EVPKISGTLKLCG 681
+ L ++L + HG VA+ G GSGKS+LL + G + + T++ G
Sbjct: 16 QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREG 75
Query: 682 TKAYVAQSPWIQSGKI------------EDNILFGKEMDRERYNAVLDACSLEKDLEILS 729
A + +G I +N+L G + + E+ L
Sbjct: 76 RLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQ 135
Query: 730 ----FGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEV 785
G +R LSGGQ+QR+ IARAL Q A + L D+P +++D + + + +
Sbjct: 136 ALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPES-ARIVMDT 194
Query: 786 L--LGLLNSKTVLYVTHQVEF-LPAADLVLVIKDGKI 819
L + + TV+ HQV++ L + ++ ++ G +
Sbjct: 195 LRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHV 231
|
Length = 262 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 2e-08
Identities = 55/222 (24%), Positives = 94/222 (42%), Gaps = 45/222 (20%)
Query: 637 KDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLK-----------LCGTKA- 684
+D++ ++ G + + G GSGKS+LL C+ G + GT ++A
Sbjct: 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79
Query: 685 --YVAQSPWIQSGKIEDNILFGKEMD-------RERYNAVLD---------ACSLEKDLE 726
+ ++ W G + N G M ER A+ A +++E
Sbjct: 80 RRRLMRTEW---GFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRATAQDWLEEVE 136
Query: 727 ILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVL 786
I D T + + SGG +QR+QIAR L + D+P +D + L ++L
Sbjct: 137 I----DPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLL-DLL 191
Query: 787 LGLLNSK--TVLYVTHQ---VEFLPAADLVLVIKDGKITQAG 823
GL+ V+ VTH L A +LV++ G++ ++G
Sbjct: 192 RGLVRDLGLAVIIVTHDLGVARLL--AQRLLVMQQGRVVESG 231
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 3e-08
Identities = 45/183 (24%), Positives = 88/183 (48%), Gaps = 35/183 (19%)
Query: 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1307
++L ++ R+ L ++ + ++G +G GK+T ++ + + EP +G+I
Sbjct: 1 VELENVTKRFGNV--TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIY 58
Query: 1308 IDGIDISLIGLHDLRTR---LSIIPQD----PVMFEGTVRSNVD-PL------EEYTDEQ 1353
I G D++ DL + ++++ Q+ P M TV N+ L ++ DE+
Sbjct: 59 IGGRDVT-----DLPPKDRDIAMVFQNYALYPHM---TVYDNIAFGLKLRKVPKDEIDER 110
Query: 1354 IWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATA 1413
+ E + Q+ E LD K + S GQRQ V LGR +++ K+ ++DE +
Sbjct: 111 VREVAELLQI-------EHLLDRKPKQ----LSGGQRQRVALGRAIVREPKVFLMDEPLS 159
Query: 1414 SVD 1416
++D
Sbjct: 160 NLD 162
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 3e-08
Identities = 59/231 (25%), Positives = 101/231 (43%), Gaps = 57/231 (24%)
Query: 1280 IVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLS-------IIPQDP 1332
++G +G GK+TL++ + + AG I G DI TRL I+ Q
Sbjct: 35 LLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDI---------TRLPPQKRDYGIVFQSY 85
Query: 1333 VMFEG-TVRSNVDPLEEY-----------TDEQIWEALDKCQLGDEVRKKEGKLDSKVTE 1380
+F TV N+ Y E++ E LD L RK G+L
Sbjct: 86 ALFPNLTVADNI----AYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQL------ 135
Query: 1381 NGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSD------C 1434
S GQ+Q V L R L +L+LDE +A D +++ LR
Sbjct: 136 -----SGGQQQRVALARALATSPGLLLLDEPL----SALDARVREHLRTEIRQLQRRLGV 186
Query: 1435 TVITIAH-RITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSFSQLVAEY 1484
T I + H + ++ +D +++++HG+IE+ +P+++ + ++ F VA++
Sbjct: 187 TTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPATPF---VADF 234
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 3e-08
Identities = 54/216 (25%), Positives = 87/216 (40%), Gaps = 46/216 (21%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK---------A 684
L IN+ + G V + G G+GKS+LL I E SGT+++ G
Sbjct: 15 AALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIP 74
Query: 685 YVAQSPWI--QSGK------IEDNILFGKEMD-------RERYNAVLDACSLEKDLEILS 729
Y+ + + Q + + +N+ F E+ R+R A L+ L L
Sbjct: 75 YLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALP 134
Query: 730 FGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL 789
LSGG++QR+ IARA+ I + D+P +D T ++ L
Sbjct: 135 AE-----------LSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWE-----IMNL 178
Query: 790 LNS-----KTVLYVTHQVEFLPA-ADLVLVIKDGKI 819
L TV+ TH E + V+ ++ GK+
Sbjct: 179 LKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 3e-08
Identities = 55/228 (24%), Positives = 97/228 (42%), Gaps = 35/228 (15%)
Query: 617 AIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGT 676
A+E+A +F + L D++ V G VA+ G G+GKS+L S + G
Sbjct: 1 ALEVAGLSFRY---GARRALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQ 57
Query: 677 LKLCGTKA------------YVAQSPWIQSG-KIEDNILFGKEMDRERYNAVLDACS--- 720
+ + G V Q P + + N+ RY+A L S
Sbjct: 58 ISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNL---------RYHAALHGLSRAE 108
Query: 721 ----LEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAH 776
+ + L L ++ ++ L+GG ++R++IARAL + L D+P +D
Sbjct: 109 ARARIAELLARLGLAERA--DDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPA 166
Query: 777 TGSHLFKEV-LLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAG 823
+ + + V L +VL+ TH V+ + A D ++V+ G++ G
Sbjct: 167 SRAAITAHVRALARDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADG 214
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 3e-08
Identities = 59/229 (25%), Positives = 102/229 (44%), Gaps = 54/229 (23%)
Query: 1264 VLRGISCT-FPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLR 1322
VL+GI T GE ++G G+GKSTL++ + IV P +G + I G +
Sbjct: 26 VLKGIDFTLHAGEVHA-LLGGNGAGKSTLMKIIAGIVPPDSGTLEIGG---------NPC 75
Query: 1323 TRLS----------IIPQDPVMFEG-TVRSNVD---PLEEYTDEQIWEALDK--CQLGDE 1366
RL+ ++PQ+P++F +V+ N+ P + + +++ + L CQL +
Sbjct: 76 ARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLD 135
Query: 1367 VRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTA-TDNLIQQ 1425
G L+ + RQ+V + R L++ +IL+LDE TAS+ A T+ L +
Sbjct: 136 S--SAGSLE-----------VADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSR 182
Query: 1426 --SLRQHFSDCTVIT--------IAHRITSVIDSDMVLLLSHGLIEEYD 1464
L I+ +A RI+ + D + L G +
Sbjct: 183 IRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIAL---SGKTADLS 228
|
Length = 510 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 3e-08
Identities = 55/219 (25%), Positives = 98/219 (44%), Gaps = 29/219 (13%)
Query: 1265 LRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTR 1324
+RG+S + G++G G+GK+T I+ L +++P +G+ + G D+ + ++R R
Sbjct: 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDV-VREPREVRRR 74
Query: 1325 LSIIPQDPVMFEG-TVRSNVD--------PLEEYTDEQIWEALDKCQLGDEVRKKEGKLD 1375
+ I+ QD + + T N+ P E E+I E LD L E + K
Sbjct: 75 IGIVFQDLSVDDELTGWENLYIHARLYGVPGAER-RERIDELLDFVGLL-EAADRLVK-- 130
Query: 1376 SKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDN----LIQQSLRQHF 1431
+S G R+ + + R L+ R ++L LDE T +D T I++ +
Sbjct: 131 --------TYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEF- 181
Query: 1432 SDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKL 1469
T++ H + D V ++ HG I +P +L
Sbjct: 182 -GMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.8 bits (134), Expect = 4e-08
Identities = 50/190 (26%), Positives = 89/190 (46%), Gaps = 24/190 (12%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCI-----LGEVPKISGTLKLCGTKAY----- 685
LK I++++ VA G G GKS+ L L ++ G +++ G Y
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQ 78
Query: 686 ----------VAQSPWIQSGKIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQTV 735
V Q P I +N+ +G ++ + NA + +E+ L+ + D+
Sbjct: 79 VDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQ-RVEETLKGAALWDEVK 137
Query: 736 --VGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSK 793
+ E LSGGQ+QR+ IARA+ + L D+P SA+D + + + +E++ L
Sbjct: 138 DKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKV-EELIHELKKDY 196
Query: 794 TVLYVTHQVE 803
T++ VTH ++
Sbjct: 197 TIVIVTHNMQ 206
|
Length = 250 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 4e-08
Identities = 58/252 (23%), Positives = 102/252 (40%), Gaps = 42/252 (16%)
Query: 1248 IDLRDLQVRYAPHMPFVLRGISCTF-PGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQI 1306
+ D+ R+ VL G++ + GEK ++G +GSGKST+++ L + GQI
Sbjct: 1 VRFSDVTKRFGILT--VLDGLNFSVAAGEKVA-LIGPSGSGKSTILRILMTLEPIDEGQI 57
Query: 1307 LIDG-------------IDISLIGLHDLRTRLSIIPQDPVMF-EGTVRSNVD-------- 1344
++G + L +R ++ ++ Q +F TV NV
Sbjct: 58 QVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLG 117
Query: 1345 -PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRR 1403
E + E LD L D+ +L S GQ+Q V + R L R
Sbjct: 118 MARAEAEKRAM-ELLDMVGLADKADHMPAQL-----------SGGQQQRVAIARALAMRP 165
Query: 1404 KILMLDEATASVDTATDNLIQQSLRQ--HFSDCTVITIAHRITSVID-SDMVLLLSHGLI 1460
K+++ DE T+++D + +R+ D T++ + H + + +D V G I
Sbjct: 166 KVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRI 225
Query: 1461 EEYDSPRKLLEN 1472
E P ++
Sbjct: 226 VEQGKPDEIFRQ 237
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 4e-08
Identities = 34/101 (33%), Positives = 53/101 (52%), Gaps = 10/101 (9%)
Query: 742 NLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVL--LGLLNS--KTVLY 797
LSGGQK+R+ +A L + D +FD+P + +D G KE+L LN KT++
Sbjct: 165 ELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQ-GV---KEILEIFDNLNKQGKTIIL 220
Query: 798 VTHQVE-FLPAADLVLVIKDGKITQAGKYTDVINSGTDFME 837
VTH ++ L + KDGKI + G D+++ F+
Sbjct: 221 VTHDLDNVLEWTKRTIFFKDGKIIKDGDTYDILSD-NKFLI 260
|
Length = 305 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 4e-08
Identities = 47/169 (27%), Positives = 75/169 (44%), Gaps = 30/169 (17%)
Query: 1265 LRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDI---SLIGLHDL 1321
L G+S T K +VG +G GKSTL + L I P G++ G D+ L
Sbjct: 31 LDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLL 90
Query: 1322 RTRLSIIPQDPVMFEGTV--RSNV-----DPLEEYTDEQIWEALDKCQLGDEVRKKEGKL 1374
R ++ I+ Q+P G++ R V +PL T L E R+K +
Sbjct: 91 RQKIQIVFQNPY---GSLNPRKKVGQILEEPLLINTS------LSA----AERREKALAM 137
Query: 1375 DSKVTENGENW-------SMGQRQLVCLGRVLLKRRKILMLDEATASVD 1416
+KV E++ S GQRQ + + R L+ +++ DE +++D
Sbjct: 138 MAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALD 186
|
Length = 327 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 5e-08
Identities = 56/194 (28%), Positives = 89/194 (45%), Gaps = 26/194 (13%)
Query: 633 NPTLKDINLKVFHGMRVAVCGTVGSGKSSL---LSCILGEVP--KISGTL---------- 677
+ LK+INL + A+ G G GKS+ L+ ++ VP K +G +
Sbjct: 37 DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDK 96
Query: 678 -----KLCGTKAYVAQSPWIQSGKIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGD 732
+L V Q P I DN+ +G ++ + LD +EK L + D
Sbjct: 97 SYSVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEI-VEKSLRGAAIWD 155
Query: 733 QTV--VGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL 790
+ + + LSGGQ+QR+ IAR L + D+ L D+P SA+D S L E L+ L
Sbjct: 156 ELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPI--STLKVEELVQEL 213
Query: 791 NSK-TVLYVTHQVE 803
+++ VTH ++
Sbjct: 214 KKDYSIIIVTHNMQ 227
|
Length = 271 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 5e-08
Identities = 56/246 (22%), Positives = 102/246 (41%), Gaps = 43/246 (17%)
Query: 1268 ISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSI 1327
+ T P T + G +GSGK++LI + + P G+I ++G L D + +
Sbjct: 17 ANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRV-----LVDAEKGIFL 71
Query: 1328 IP---------QDPVMFEG-TVRSNVDPLEEYTD-EQIWEALDKCQLGDEVRKKEGKLDS 1376
P QD +F TVR N+ + Q + + + + + G L
Sbjct: 72 PPEKRRIGYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTL-- 129
Query: 1377 KVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTAT-DNLIQ--QSLRQHFSD 1433
S G++Q V +GR LL ++L++DE AS+D ++ + LR +
Sbjct: 130 ---------SGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEI-N 179
Query: 1434 CTVITIAHRITSVID-SDMVLLLSHGLIEEYD-----------SPRKLLENKSSSFSQLV 1481
++ ++H + V+ +D V++L +G ++ P E +SS V
Sbjct: 180 IPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSPDFPPWLPREEQSSVLEGTV 239
Query: 1482 AEYTQR 1487
E+ R
Sbjct: 240 LEHDPR 245
|
Length = 352 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 5e-08
Identities = 50/184 (27%), Positives = 77/184 (41%), Gaps = 31/184 (16%)
Query: 1252 DLQVRYAPHMPFVLRGISCTF-PGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDG 1310
V +L+G+ GE IVG +GSGKSTL+ L + +P++G++ + G
Sbjct: 13 SKTVGQGEGELSILKGVELVVKRGET-VAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLG 71
Query: 1311 IDISLI---GLHDLRTR-LSIIPQD----PVMFEGTVRSNVD-PLE---EYTDEQIWEA- 1357
+ + LR R + + Q P + T NV PLE E + + A
Sbjct: 72 QPLHKLDEDARAALRARHVGFVFQSFHLIPNL---TALENVALPLELRGESSADSRAGAK 128
Query: 1358 --LDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASV 1415
L+ LG + +L S G++Q V L R R +L DE T ++
Sbjct: 129 ALLEAVGLGKRLTHYPAQL-----------SGGEQQRVALARAFAGRPDVLFADEPTGNL 177
Query: 1416 DTAT 1419
D AT
Sbjct: 178 DRAT 181
|
Length = 228 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 5e-08
Identities = 47/168 (27%), Positives = 72/168 (42%), Gaps = 26/168 (15%)
Query: 1264 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLI---GLHD 1320
VL +S + + ++GR+G GKSTL + L + P+ G + G ++ +
Sbjct: 27 VLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKA 86
Query: 1321 LRTRLSIIPQDP---VMFEGTVRSNVD-PLEEYTD-------EQIWEALDKCQLGDEV-R 1368
R + ++ QD V TVR + PL + E L L D V
Sbjct: 87 FRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLD 146
Query: 1369 KKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVD 1416
K+ +L S GQ Q VCL R L K+L+LDEA +++D
Sbjct: 147 KRPPQL-----------SGGQLQRVCLARALAVEPKLLILDEAVSNLD 183
|
Length = 268 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 5e-08
Identities = 47/153 (30%), Positives = 69/153 (45%), Gaps = 26/153 (16%)
Query: 638 DINLKVFHGMRVAVCGTVGSGKSSLLSCILGEV-PKISGTLKLCGTKA------YVAQSP 690
++ +V G + +CG G GKSSL ILGE+ P G L TK YV Q P
Sbjct: 470 SLSFEVPSGNNLLICGPNGCGKSSLFR-ILGELWPVYGGRL----TKPAKGKLFYVPQRP 524
Query: 691 WIQSGKIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGIN-------- 742
++ G + D I++ + + + D LE+ L+ + + ER
Sbjct: 525 YMTLGTLRDQIIYPDSSEDMKRRGLSDK-DLEQILDNVQLTH---ILEREGGWSAVQDWM 580
Query: 743 --LSGGQKQRIQIARALYQDADIYLFDDPFSAV 773
LSGG+KQRI +AR Y + D+ SAV
Sbjct: 581 DVLSGGEKQRIAMARLFYHKPQFAILDECTSAV 613
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 5e-08
Identities = 58/210 (27%), Positives = 92/210 (43%), Gaps = 49/210 (23%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLC-GTKA-YVAQSPWIQ 693
LKDI+L F G ++ V G G+GKS+LL + G + +G + G K Y+ Q P +
Sbjct: 21 LKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLD 80
Query: 694 SGK-IEDNILFG-KEMDR--ERYNAV------------------------LDAC---SLE 722
K + +N+ G E+ +R+N + +DA L+
Sbjct: 81 PTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLD 140
Query: 723 KDLEI------LSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAH 776
+ LEI D V LSGG+++R+ + R L D+ L D+P + +DA
Sbjct: 141 RKLEIAMDALRCPPWDADVT-----KLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAE 195
Query: 777 TGSHLFKEVLLGLLNSK-TVLYVTHQVEFL 805
+ + L + L TV+ VTH FL
Sbjct: 196 SVAWLEQH----LQEYPGTVVAVTHDRYFL 221
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 6e-08
Identities = 63/218 (28%), Positives = 95/218 (43%), Gaps = 43/218 (19%)
Query: 613 SSETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCI------ 666
++ + I++ + NF + LK+INL + A G G GKS+LL
Sbjct: 9 TAPSKIQVRNLNFYYG---KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYEL 65
Query: 667 ------LGEV---------PKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFG------- 704
GE+ PK L L V Q P I DNI FG
Sbjct: 66 YPEQRAEGEILLDGENILTPKQDIAL-LRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKL 124
Query: 705 --KEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDAD 762
EMD ER L +L +++ D+ + + G +LSGGQ+QR+ IAR + +
Sbjct: 125 SRAEMD-ERVEWALTKAALWNEVK-----DK--LHQSGYSLSGGQQQRLCIARGIAIRPE 176
Query: 763 IYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTH 800
+ L D+P SA+D + + +E++ L TV+ VTH
Sbjct: 177 VLLLDEPCSALDPISTGRI-EELITELKQDYTVVIVTH 213
|
Length = 260 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 6e-08
Identities = 59/228 (25%), Positives = 94/228 (41%), Gaps = 49/228 (21%)
Query: 608 KQPRGSSETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCI- 666
+ S I + + S+ +K++ + G A+ G G GKS++L +
Sbjct: 4 TNKKISKNIIISLQNVTISYGTFE---AVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLN 60
Query: 667 ----LGEVPKISGTLKLCGTKAY---------------VAQSPWIQSGKIEDNILFGK-- 705
L E + G + GT Y V Q P I +NI FG
Sbjct: 61 RMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARI 120
Query: 706 -----EMDRE-----RYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIAR 755
+MD R AV D C KD + E G +LSGGQ+QR+ IAR
Sbjct: 121 NGYTGDMDELVERSLRKAAVWDEC---KD----------KLNESGYSLSGGQQQRLCIAR 167
Query: 756 ALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVE 803
+ + ++ L D+P SA+D + + +E + L + T++ VTH ++
Sbjct: 168 TIAIEPEVILMDEPCSALDPISTLKI-EETMHELKKNFTIVIVTHNMQ 214
|
Length = 269 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.9 bits (132), Expect = 7e-08
Identities = 59/225 (26%), Positives = 96/225 (42%), Gaps = 43/225 (19%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCI-----LGEVPKISGTLKLCGTKAY----- 685
L +NL++ A+ G GSGKS+LL L ++SG + L G +
Sbjct: 19 LDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVI 78
Query: 686 --------VAQSP-WIQSGKIEDNILFGKEMDR---------ERYNAVLDACSLEKDLEI 727
V Q P I + I +N+ G +++R ER L+ L ++
Sbjct: 79 ELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEV-- 136
Query: 728 LSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLL 787
+ + LSGGQ+QR+ IARAL ++ L D+P + +D + + + + L
Sbjct: 137 -----KDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKI-ESLFL 190
Query: 788 GLLNSKTVLYVTHQVEFLPAA----DLVLVIKDGKITQAGKYTDV 828
L T++ VTH F A D V + G+I + G +V
Sbjct: 191 ELKKDMTIVLVTH---FPQQAARISDYVAFLYKGQIVEWGPTREV 232
|
Length = 250 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.0 bits (132), Expect = 7e-08
Identities = 67/271 (24%), Positives = 116/271 (42%), Gaps = 59/271 (21%)
Query: 618 IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCI-----LGEVPK 672
IE+ + N +D + LK++NL + A+ G G GKS+ + + L +
Sbjct: 4 IEVENLNTYFD--DAH-ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFR 60
Query: 673 ISGTLKLCGTKAY---------------VAQSPWIQSGKIEDNILFG----KEMDRERYN 713
G + L G Y V Q P I DN+ +G E D +
Sbjct: 61 HEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIE 120
Query: 714 AVLDACSLEKDLEILSFGDQT--VVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFS 771
+ E+ L+ + D+ + + + LSGGQ+QR+ IAR + ++ L D+P S
Sbjct: 121 ERV-----EESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCS 175
Query: 772 AVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYT----- 826
A+D + + + ++++ L T++ VTH ++ + T+ KYT
Sbjct: 176 ALDPISTTKI-EDLIHKLKEDYTIVIVTHNMQ--------------QATRVSKYTSFFLN 220
Query: 827 -DVINSG-TDFMELVDAHKQALSTLDSIEGR 855
++I SG TD + + K+ T D I GR
Sbjct: 221 GEIIESGLTDQIFINPKDKR---TEDYITGR 248
|
Length = 250 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.6 bits (131), Expect = 9e-08
Identities = 51/210 (24%), Positives = 98/210 (46%), Gaps = 29/210 (13%)
Query: 617 AIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGT 676
AI++ D +F ++ S ++ I++ ++ A+ G G GKS+ + L + ++ G
Sbjct: 7 AIKVKDLSFYYNTSK---AIEGISMDIYRNKVTAIIGPSGCGKSTFIK-TLNRISELEGP 62
Query: 677 LKLCGTKAYVAQS---PWIQSGK------------------IEDNILFGKEMDRERYNAV 715
+K+ G + Q+ P I + I +N+ +G + + A
Sbjct: 63 VKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQAD 122
Query: 716 LDACSLEKDLEILSFGDQTV--VGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAV 773
LD +E L+ + + + + + LSGGQ+QR+ IARAL + L D+P SA+
Sbjct: 123 LDEI-VESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSAL 181
Query: 774 DAHTGSHLFKEVLLGLLNSKTVLYVTHQVE 803
D + +E++ L + T+ VTH ++
Sbjct: 182 DP-IATMKVEELIHSLRSELTIAIVTHNMQ 210
|
Length = 259 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 9e-08
Identities = 66/308 (21%), Positives = 119/308 (38%), Gaps = 69/308 (22%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILG--EVPKISGT----LKLCGTKAYVA-- 687
LK+I+ + G + + G G+GKS L+ + G + SG + LC YV
Sbjct: 16 LKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERP 75
Query: 688 -----QSPWIQSGKIEDNILFGKEMDRERYNAVLDACSLEKDLEILS------FGDQTVV 736
P + + F D+ R + K + I+ +GD TV+
Sbjct: 76 SKVGEPCPVCGGTLEPEEVDFWNLSDKLRRR-------IRKRIAIMLQRTFALYGDDTVL 128
Query: 737 -------------GERGI---------------------NLSGGQKQRIQIARALYQDAD 762
G+ + +LSGG+KQR+ +AR L ++
Sbjct: 129 DNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPF 188
Query: 763 IYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVT-HQVEFLP-AADLVLVIKDGKIT 820
++L D+P +D T + + + S + +T H E + +D + +++G+I
Sbjct: 189 LFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENGEIK 248
Query: 821 QAGKYTDVINSGTDFMELVDAHKQALSTL---DSIEGRPLSEKGSANGENDGTSATDGVV 877
+ G +V+ FME V ++ I+ R +S K + + A D V
Sbjct: 249 EEGTPDEVVAV---FMEGVSEVEKECEVEVGEPIIKVRNVS-KRYISVDRGVVKAVDNVS 304
Query: 878 KEVENKEV 885
EV+ E+
Sbjct: 305 LEVKEGEI 312
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 55.3 bits (133), Expect = 9e-08
Identities = 70/280 (25%), Positives = 121/280 (43%), Gaps = 49/280 (17%)
Query: 614 SETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKI 673
S AI++ + S+ + D++ + G + G G+GKS++ +LG +
Sbjct: 1 SNVAIDLVGVSKSY---GDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD 57
Query: 674 SGTLKLCG----TKAYVAQS-----PWIQSGKIE----DNIL-FGKEM---DRERYNAV- 715
G + + G ++A +A+ P + E +N+L FG+ RE +
Sbjct: 58 RGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIP 117
Query: 716 --LDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAV 773
L+ LE ++ R LSGG K+R+ +ARAL D + + D+P + +
Sbjct: 118 SLLEFARLESKADV-----------RVALLSGGMKRRLTLARALINDPQLLILDEPTTGL 166
Query: 774 DAHTGSHLFKEVLLGLL-NSKTVLYVTHQVEFLPAA----DLVLVIKDGKITQAGKYTDV 828
D H HL E L LL KT+L TH F+ A D + V++ G+ G+ +
Sbjct: 167 DPH-ARHLIWERLRSLLARGKTILLTTH---FMEEAERLCDRLCVLESGRKIAEGRPHAL 222
Query: 829 INS--GTDFMELVDAHKQALSTLDSIEGRPLSEKGSANGE 866
I+ G + +E+ L L RP + + +GE
Sbjct: 223 IDEQIGCNVIEIYGGDPDELRELI----RPYARRIEVSGE 258
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 52.4 bits (127), Expect = 1e-07
Identities = 27/88 (30%), Positives = 49/88 (55%), Gaps = 5/88 (5%)
Query: 1248 IDLRDLQVRYAPHMPFVLRGISCTF-PGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQI 1306
++LR + R+ L G+S + GE ++G G+GKSTL++ L + +P +G+I
Sbjct: 1 LELRGITKRFGGVK--ALDGVSLSVRRGEV-HALLGENGAGKSTLMKILSGLYKPDSGEI 57
Query: 1307 LIDGIDISLIGLHD-LRTRLSIIPQDPV 1333
L+DG ++S D R ++++ Q V
Sbjct: 58 LVDGKEVSFASPRDARRAGIAMVYQLSV 85
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 1e-07
Identities = 57/231 (24%), Positives = 94/231 (40%), Gaps = 47/231 (20%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG-------------T 682
L ++L + G +A+ G G+GKS+LL + GE+ SG + L G
Sbjct: 17 LDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARH 76
Query: 683 KAYVAQSPWIQ-SGKIEDNILFG-----KEMDRERYNAVLDACSLEKDLEILSFGDQTVV 736
+A + Q+ + +++ + G + E + DL L+
Sbjct: 77 RAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLA------- 129
Query: 737 GERGIN-LSGGQKQRIQIARALYQ------DADIYLFDDPFSAVDAHTGSHLFKEVLLGL 789
R LSGG++QR+Q+AR L Q D+P SA+D H + L L
Sbjct: 130 -GRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIA---H--QHHTLRL 183
Query: 790 LNSKT-----VLYVTHQVEFLPA--ADLVLVIKDGKITQAGKYTDVINSGT 833
VL V H + L A AD ++++ G++ +G DV+ T
Sbjct: 184 ARQLAREGGAVLAVLHDLN-LAAQYADRIVLLHQGRVIASGSPQDVLTDET 233
|
Length = 259 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 1e-07
Identities = 42/196 (21%), Positives = 74/196 (37%), Gaps = 43/196 (21%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWI--- 692
L D++L + G + + G G+GK++LL + G + G +++ G + +
Sbjct: 18 LHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLL 77
Query: 693 --------QSGKI------EDNILFGKEMD-------RERYNAVLDACSLEKDLEILSFG 731
Q ++ +N+ E+ + R A L LE +
Sbjct: 78 RRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFP-- 135
Query: 732 DQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGS---HLFKEV-LL 787
LSGG++QR+ IARA+ + L D+P +D L K +
Sbjct: 136 ---------EQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKR 186
Query: 788 GLLNSKTVLYVTHQVE 803
G TV+ TH +
Sbjct: 187 GT----TVIVATHDLS 198
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 1e-07
Identities = 84/346 (24%), Positives = 149/346 (43%), Gaps = 59/346 (17%)
Query: 1169 LVFLISIPKGFIDPAIAGL--------AVTYGLTL----------NNLQAMLIWL---AC 1207
+FL P G +DP A L G+++ +L IWL
Sbjct: 188 FLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENGEI 247
Query: 1208 QMENKIISVERIFQYTCIPSEPPLEIEESRPNHSWPSHGKIDLRDLQVRYAPHMPFVLR- 1266
+ E V +F E E+E P I +R++ RY V++
Sbjct: 248 KEEGTPDEVVAVFMEGVSEVEKECEVEVGEP--------IIKVRNVSKRYISVDRGVVKA 299
Query: 1267 --GISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILI----DGIDISLIGLHD 1320
+S + GIVG +G+GK+TL + + ++EP +G++ + + +D++ G D
Sbjct: 300 VDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGP-D 358
Query: 1321 LRTR----LSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQ-------LGDEVRK 1369
R R + I+ Q+ ++ R+ +D L E ++ + L + + +G + K
Sbjct: 359 GRGRAKRYIGILHQEYDLY--PHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEK 416
Query: 1370 KEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSL-- 1427
E LD E S G+R V L +VL+K +I++LDE T ++D T + S+
Sbjct: 417 AEEILDKYPDE----LSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILK 472
Query: 1428 -RQHFSDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLE 1471
R+ T I ++H + V+D D L+ G I + P +++E
Sbjct: 473 AREEMEQ-TFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEIVE 517
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 1e-07
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 6/88 (6%)
Query: 741 INLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVL-LGLLNSKTVLYVT 799
I+LSGG+ QR+ IA AL ++A YLFD+P + +D + + + L KT L V
Sbjct: 70 IDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVE 129
Query: 800 HQVEFLP-AADLVLVIKDGKITQAGKYT 826
H + L +D + V + + G Y
Sbjct: 130 HDLAVLDYLSDRIHVFEG----EPGVYG 153
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 56.9 bits (137), Expect = 1e-07
Identities = 50/199 (25%), Positives = 95/199 (47%), Gaps = 8/199 (4%)
Query: 1262 PFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDL 1321
P V R ++ TF + T +G G+GK+T + L ++ P +G +L+ G DI L +
Sbjct: 944 PAVDR-LNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIE-TNLDAV 1001
Query: 1322 RTRLSIIPQDPVMFEG-TVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTE 1380
R L + PQ ++F TV ++ + + + ++ QL E ++ L K E
Sbjct: 1002 RQSLGMCPQHNILFHHLTVAEHI----LFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNE 1057
Query: 1381 NGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIA 1440
++ S G ++ + + + K+++LDE T+ VD + I L ++ S T+I
Sbjct: 1058 EAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMST 1117
Query: 1441 HRITSV-IDSDMVLLLSHG 1458
H + + D + ++S G
Sbjct: 1118 HHMDEADLLGDRIAIISQG 1136
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.6 bits (131), Expect = 1e-07
Identities = 55/196 (28%), Positives = 92/196 (46%), Gaps = 37/196 (18%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCI-----LGEVPKISGTLKLCGTKAY----- 685
+K++NL V G A+ G G GK++ L I L +++G + L G Y
Sbjct: 20 VKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVD 79
Query: 686 ----------VAQSP-WIQSGKIEDNILFGKEM----DRERYNAVLDACSLEKDLEILSF 730
V Q P + + DN++ G ++ DR+ V E+ L +
Sbjct: 80 PVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVA-----ERSLRGAAL 134
Query: 731 GDQTVVGER----GINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVL 786
D+ V +R LSGGQ+QR+ IARAL + +I L D+P SA+D + + + ++++
Sbjct: 135 WDE--VKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARI-EDLM 191
Query: 787 LGLLNSKTVLYVTHQV 802
L T++ VTH +
Sbjct: 192 TDLKKVTTIIIVTHNM 207
|
Length = 252 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.2 bits (130), Expect = 1e-07
Identities = 58/217 (26%), Positives = 101/217 (46%), Gaps = 39/217 (17%)
Query: 1279 GIVGRTGSGKSTLIQTLFRI--VEPAA---GQILIDGIDISLIGLHD--LRTRLSIIPQD 1331
++G +G GK+T ++ + R+ + P A G+IL+DG DI + +R R+ ++ Q
Sbjct: 34 ALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQK 93
Query: 1332 PVMFEG-TVRSNV------------DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKV 1378
P F +V NV D L E + +L L DEV+ + L +
Sbjct: 94 PNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAER----SLRGAALWDEVKDR---LKTPA 146
Query: 1379 TENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVIT 1438
T S GQ+Q +C+ R L +IL++DE T+++D A+ I+ + T+I
Sbjct: 147 T----GLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIII 202
Query: 1439 IAHRI---TSVIDSDMVLL----LSHGLIEE-YDSPR 1467
+ H + V D+ L + HG ++ + +PR
Sbjct: 203 VTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLFTNPR 239
|
Length = 252 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.6 bits (131), Expect = 1e-07
Identities = 41/159 (25%), Positives = 70/159 (44%), Gaps = 11/159 (6%)
Query: 1264 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRT 1323
V ++ P T I+G G GKSTL++TL R++ PA G + +DG I ++
Sbjct: 22 VAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVAR 81
Query: 1324 RLSII------PQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSK 1377
R+ ++ P D + E R +T W D+ + ++ +
Sbjct: 82 RIGLLAQNATTPGDITVQELVARGRYPHQPLFTR---WRKEDEEAVTKAMQAT--GITHL 136
Query: 1378 VTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVD 1416
++ + S GQRQ + VL + I++LDE T +D
Sbjct: 137 ADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLD 175
|
Length = 265 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 2e-07
Identities = 60/248 (24%), Positives = 107/248 (43%), Gaps = 55/248 (22%)
Query: 615 ETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKIS 674
+ +++ + N+++ +H LK IN+ + G A+ G G+GKS+L + G + S
Sbjct: 3 DYILKVEELNYNYSDGTH--ALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSS 60
Query: 675 GT---------------LKLCGTKAYVAQSPWIQ--SGKIEDNILFG-------KEMDRE 710
G +KL + V Q P Q S + ++ FG ++ R+
Sbjct: 61 GRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRK 120
Query: 711 RYNAVLDACSLE----KDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLF 766
R + L +E K LSFG QK+R+ IA L + + +
Sbjct: 121 RVDNALKRTGIEHLKDKPTHCLSFG---------------QKKRVAIAGVLVMEPKVLVL 165
Query: 767 DDPFSAVDAHTGSHLFKEVL-----LGLLNSKTVLYVTHQVEFLPA-ADLVLVIKDGKIT 820
D+P + +D S + K ++ LGL T++ TH ++ +P D V V+K+G++
Sbjct: 166 DEPTAGLDPMGVSEIMKLLVEMQKELGL----TIIIATHDIDIVPLYCDNVFVMKEGRVI 221
Query: 821 QAGKYTDV 828
G +V
Sbjct: 222 LQGNPKEV 229
|
Length = 283 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 2e-07
Identities = 40/197 (20%), Positives = 79/197 (40%), Gaps = 27/197 (13%)
Query: 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1307
++ ++ Y +L+ +S + IVG G+GKSTL++ L + P +G +
Sbjct: 322 LEFENVSKGYDGGRL-LLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVK 380
Query: 1308 I-DGIDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQL--G 1364
+ + + I H + + DEQ A G
Sbjct: 381 VGETVKIGYFDQHRDELDPDKTVLE----------ELSEGFPDGDEQEVRAYLGRFGFTG 430
Query: 1365 DEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQ 1424
++ K G L S G++ + L ++LL+ +L+LDE T +D + ++
Sbjct: 431 EDQEKPVGVL-----------SGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALE 479
Query: 1425 QSLRQHFSDCTVITIAH 1441
++L + TV+ ++H
Sbjct: 480 EALLDF--EGTVLLVSH 494
|
Length = 530 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 2e-07
Identities = 59/242 (24%), Positives = 109/242 (45%), Gaps = 37/242 (15%)
Query: 1259 PHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDIS---- 1314
+ L IS TF K I+G +GSGKSTL+ +++ G I + I I
Sbjct: 36 ENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKN 95
Query: 1315 ------------LIGLHDLRTRLSIIPQDP--VMFEGTVRSNV--DPLEEYTDEQIWEAL 1358
+ +LR R+S++ Q P +F+ T+ ++ P+ AL
Sbjct: 96 NHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPV----------AL 145
Query: 1359 -----DKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATA 1413
+ +L K G DS + + S GQ++ V + +L + +IL+ DE TA
Sbjct: 146 GVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTA 205
Query: 1414 SVDTATDN-LIQQSLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLE 1471
+D ++ ++Q L ++ TV I H + V++ +D V+++ G I + +P ++
Sbjct: 206 GLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEIFT 265
Query: 1472 NK 1473
++
Sbjct: 266 DQ 267
|
Length = 320 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.0 bits (131), Expect = 2e-07
Identities = 60/246 (24%), Positives = 97/246 (39%), Gaps = 76/246 (30%)
Query: 632 HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG---------- 681
L D++L + G VA+ G G+GKS+LL + GE+ SG ++L G
Sbjct: 14 GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAE 73
Query: 682 ---TKAYVAQS------------------PWIQSGKIEDNILFGKEMDRERYNAVLDACS 720
+A + Q P + ED+ L + A +D
Sbjct: 74 LARRRAVLPQHSSLSFPFTVEEVVAMGRAPH-GLSRAEDDALVAAAL------AQVDLAH 126
Query: 721 LE-KDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADI-----YLF-DDPFSAV 773
L +D LS GG++QR+Q+AR L Q + +L D+P SA+
Sbjct: 127 LAGRDYPQLS---------------GGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSAL 171
Query: 774 D-AHTGSHLFKEVLLGLLNSKT------VLYVTHQVEFLPA--ADLVLVIKDGKITQAGK 824
D AH + +L L V+ V H + L A AD ++++ G++ G
Sbjct: 172 DLAH------QHHVLRLARQLAHERGLAVIVVLHDLN-LAARYADRIVLLHQGRLVADGT 224
Query: 825 YTDVIN 830
+V+
Sbjct: 225 PAEVLT 230
|
Length = 258 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.7 bits (130), Expect = 2e-07
Identities = 56/228 (24%), Positives = 100/228 (43%), Gaps = 41/228 (17%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-----------KA 684
+ D++L+V G V + G G+GK++L + I G SGT+ G +
Sbjct: 20 VNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARL 79
Query: 685 YVA---QSPWIQSG-KIEDNILFGKEMDRERYNAVLDAC--------SLEKDLEILSFGD 732
+A Q + G + +N+ G R + +L + E+ E+L F
Sbjct: 80 GIARTFQITRLFPGLTVLENVAVG-AHARLGLSGLLGRPRARKEEREARERARELLEF-- 136
Query: 733 QTVVG------ERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVL 786
VG NLS GQ++R++IARAL + L D+P + ++ L + L
Sbjct: 137 ---VGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAE--L 191
Query: 787 LGLLNSK---TVLYVTHQVEFL-PAADLVLVIKDGKITQAGKYTDVIN 830
+ L + T+L + H ++ + AD ++V+ G++ G +V N
Sbjct: 192 IRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVRN 239
|
Length = 250 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 2e-07
Identities = 48/216 (22%), Positives = 85/216 (39%), Gaps = 45/216 (20%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKA----------- 684
++ ++ +V G + G G+GK++ + + + SG + G
Sbjct: 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRI 75
Query: 685 -YVAQSPWIQSGKIEDNILFGKE--------------MDRERYNAVLDACSLEKDLEILS 729
V Q D+ L G E RER + +LD + +L
Sbjct: 76 GIVFQDL------SVDDELTGWENLYIHARLYGVPGAERRERIDELLDF------VGLLE 123
Query: 730 FGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEV-LLG 788
D+ V SGG ++R++IAR+L ++ D+P +D T +H+++ + L
Sbjct: 124 AADRLVK-----TYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLK 178
Query: 789 LLNSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAG 823
T+L TH +E D V +I G+I G
Sbjct: 179 EEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEG 214
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 55.8 bits (134), Expect = 2e-07
Identities = 53/200 (26%), Positives = 97/200 (48%), Gaps = 11/200 (5%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQ 693
P + +N+ + A G G+GK++ LS + G +P SGT+ + G Q
Sbjct: 944 PAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQ 1003
Query: 694 SGKI--EDNILFGKEMDRER--YNAVLDACSLEK-DLEILSFGDQTVV----GERGINLS 744
S + + NILF E + A L S E+ LE+ + + T + E +LS
Sbjct: 1004 SLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLS 1063
Query: 745 GGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQV-E 803
GG ++++ +A A DA + + D+P S VD ++ ++ ++LL + +T++ TH + E
Sbjct: 1064 GGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIW-DLLLKYRSGRTIIMSTHHMDE 1122
Query: 804 FLPAADLVLVIKDGKITQAG 823
D + +I G++ +G
Sbjct: 1123 ADLLGDRIAIISQGRLYCSG 1142
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 2e-07
Identities = 60/230 (26%), Positives = 96/230 (41%), Gaps = 51/230 (22%)
Query: 622 DGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG 681
+G+ D+ L +++ + G +A+ G+ GSGKS+LL + G SG + G
Sbjct: 17 EGSVQTDV------LHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNG 70
Query: 682 TKAYVAQSPWIQSGKIE----------------------DNI----LFGKEMDRERYNAV 715
S + K E +N+ L GK+ E
Sbjct: 71 QPMSKLSS----AAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAE----- 121
Query: 716 LDACSLEKDLEIL-SFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVD 774
+ LE+L + G + R LSGG++QR+ IARAL + + L D+P +D
Sbjct: 122 ----INSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLD 177
Query: 775 AHTGSHLFKEVLLGLLNSK---TVLYVTHQVEFLPAADLVLVIKDGKITQ 821
A +F+ LLG LN L VTH ++ L ++DG++T
Sbjct: 178 ARNADSIFQ--LLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTA 225
|
Length = 233 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 3e-07
Identities = 56/229 (24%), Positives = 101/229 (44%), Gaps = 28/229 (12%)
Query: 1264 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRT 1323
VL IS P + ++G +GSGK+TL++ + + +G I G D+S LH
Sbjct: 17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVS--RLHARDR 74
Query: 1324 RLSIIPQDPVMFEG-TVRSNVD-----------PLEEYTDEQIWEALDKCQLGDEVRKKE 1371
++ + Q +F TV N+ P ++ + L+ QL +
Sbjct: 75 KVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP 134
Query: 1372 GKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHF 1431
+L S GQ+Q V L R L +IL+LDE ++D +++ LRQ
Sbjct: 135 AQL-----------SGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLH 183
Query: 1432 SDC--TVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLENKSSSF 1477
+ T + + H ++ +D V+++S G IE+ +P ++ ++ F
Sbjct: 184 EELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREPATRF 232
|
Length = 353 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 3e-07
Identities = 50/243 (20%), Positives = 94/243 (38%), Gaps = 34/243 (13%)
Query: 606 VEKQPRGSSETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSC 665
V K P E +E+ D S +KD++ +V G V + G G+G+S L+
Sbjct: 246 VVKPPSTPGEVVLEVED--LSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEA 303
Query: 666 ILGEVPKISGTLKLCGTKAYVAQSP--WIQSG-----------------KIEDNILFGKE 706
I G SG + L G SP + G + +N++ G+
Sbjct: 304 ISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRH 363
Query: 707 MD-------RERYNAVLDACS-LEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALY 758
A+ L ++ ++ + +LSGG +Q++ +AR L
Sbjct: 364 DKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPAR----SLSGGNQQKLILARELA 419
Query: 759 QDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPA-ADLVLVIKDG 817
+ D+ + P +D + + +L K VL ++ ++ + +D + VI +G
Sbjct: 420 RRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEG 479
Query: 818 KIT 820
+I
Sbjct: 480 RIV 482
|
Length = 501 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.1 bits (127), Expect = 3e-07
Identities = 49/212 (23%), Positives = 93/212 (43%), Gaps = 33/212 (15%)
Query: 617 AIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCI------LGEV 670
AI++ + +F +D L+ ++++++ A+ G G GKS+ L C+ EV
Sbjct: 7 AIKVNNLSFYYDTQK---ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEV 63
Query: 671 PKISGTLKLCGTKAY---------------VAQSPWIQSGKIEDNILFGKEMDRERYNAV 715
++ G ++ Y V P + + DN+ +G ++ R
Sbjct: 64 -RVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLE 122
Query: 716 LDACSLEKDLEILSFGDQTV--VGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAV 773
+D +E L+ D+ + + ++LSGGQ+QR+ IARAL + L D+P +
Sbjct: 123 IDDI-VESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGL 181
Query: 774 DAHTG---SHLFKEVLLGLLNSKTVLYVTHQV 802
D L + L L + T++ V+H +
Sbjct: 182 DPIASMKVESLIQS--LRLRSELTMVIVSHNL 211
|
Length = 261 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 3e-07
Identities = 60/223 (26%), Positives = 94/223 (42%), Gaps = 39/223 (17%)
Query: 638 DINLKVFHGMRVAVCGTVGSGKSSLLSCILG----EVPKISGTLKLCGTK---------- 683
D+NL + G +A+ G GSGKS ILG + + SG + L G
Sbjct: 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRH 63
Query: 684 -AYVAQSPW--------IQSGKIEDNILFGKEMDRERYNAV--LDACSLEKDLEIL-SFG 731
A + Q+P + + IE GK + R + L+A L E+L +
Sbjct: 64 IATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYP 123
Query: 732 DQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL-- 789
Q LSGG QR+ IA AL + + D+P + +D + + K L L
Sbjct: 124 FQ---------LSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKL-LRELRQ 173
Query: 790 LNSKTVLYVTHQVEFLP-AADLVLVIKDGKITQAGKYTDVINS 831
L +L +TH + + AD V V+ DG+I + G ++ +
Sbjct: 174 LFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYN 216
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 3e-07
Identities = 54/197 (27%), Positives = 99/197 (50%), Gaps = 32/197 (16%)
Query: 1279 GIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGL-----HDLRTRLSIIPQDPV 1333
G+VG +G GKST + + +V+ G++ G D L+G+ +R+ + +I QDP+
Sbjct: 51 GVVGESGCGKSTFARAIIGLVKATDGEVAWLGKD--LLGMKDDEWRAVRSDIQMIFQDPL 108
Query: 1334 ------MFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVR---KKEGKLDSKVTENGEN 1384
M G + + +PL Y + L + ++ D V+ K G L + +
Sbjct: 109 ASLNPRMTIGEIIA--EPLRTYHPK-----LSRQEVKDRVKAMMLKVGLLPNLINRYPHE 161
Query: 1385 WSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATD----NLIQQSLRQHFSDCTVITIA 1440
+S GQ Q + + R L+ K+++ DE +++D + NL+QQ R+ ++I IA
Sbjct: 162 FSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQRE--MGLSLIFIA 219
Query: 1441 HRITSVID--SDMVLLL 1455
H + +V+ SD VL++
Sbjct: 220 HDL-AVVKHISDRVLVM 235
|
Length = 331 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 4e-07
Identities = 56/218 (25%), Positives = 97/218 (44%), Gaps = 29/218 (13%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGT------------LKLCGTK 683
L ++N+++ G V + G GSGKS+L+ + G + SG +KL +
Sbjct: 23 LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82
Query: 684 AYVA---QSPWIQ--SGKIEDNILFGK----EMDRERYNAVLDACSLEKDLEILSFGDQT 734
V Q P Q IE +I FG + E N V A ++ L+ + D++
Sbjct: 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVG-LDYEDYKDKS 141
Query: 735 VVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEV-LLGLLNSK 793
LSGGQK+R+ IA + + I + D+P + +D + ++ L +
Sbjct: 142 -----PFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNM 196
Query: 794 TVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYTDVIN 830
T++ V+H +E + AD ++V+ GK G +V
Sbjct: 197 TIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFK 234
|
Length = 287 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.1 bits (127), Expect = 4e-07
Identities = 62/234 (26%), Positives = 93/234 (39%), Gaps = 45/234 (19%)
Query: 624 NFSWDISSHNP----TLKDINLKVFHGMRVAVCGTVGSGKSSLLS------------CIL 667
N S+ + P L + +L V GT GSGKS+++ I+
Sbjct: 11 NVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIV 70
Query: 668 GE------VPKISGTLKLCGTKAYVAQSPWIQ--SGKIEDNILFGK----EMDRERYNAV 715
G+ + KI +L V Q P Q IE +I FG E +E Y V
Sbjct: 71 GDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKV 130
Query: 716 ---LDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSA 772
L L +D V LSGGQK+R+ +A + D + + D+P
Sbjct: 131 PELLKLVQLPEDY----------VKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGG 180
Query: 773 VDAHTGSHLFKEVLLGLLNS--KTVLYVTHQV-EFLPAADLVLVIKDGKITQAG 823
+D G F + L K ++ VTH + + L AD V+V+ +GK+ G
Sbjct: 181 LDP-KGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIG 233
|
Length = 289 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 4e-07
Identities = 54/210 (25%), Positives = 82/210 (39%), Gaps = 54/210 (25%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQ 693
P LKD + V G V V G GSG S+LL +
Sbjct: 21 PILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEG--------------------- 59
Query: 694 SGKIEDNILF-GKEMD--RERYNAVLDACSLEKDL--------EILSF-----GDQTVVG 737
+ +E +I + G E+Y + S E+D+ E L F G++ V
Sbjct: 60 NVSVEGDIHYNGIPYKEFAEKYPGEIIYVS-EEDVHFPTLTVRETLDFALRCKGNEFV-- 116
Query: 738 ERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLY 797
RGI SGG+++R+ IA AL A + +D+ +D+ T + K + VL
Sbjct: 117 -RGI--SGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILK----CIRTMADVLK 169
Query: 798 VTHQVEFLPAA-------DLVLVIKDGKIT 820
T V A+ D VLV+ +G+
Sbjct: 170 TTTFVSLYQASDEIYDLFDKVLVLYEGRQI 199
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 4e-07
Identities = 51/168 (30%), Positives = 84/168 (50%), Gaps = 26/168 (15%)
Query: 1264 VLRGISCTF-PGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIG---LH 1319
V++ IS T PGE G+VG +GSGKST L R++ + G+I DG + + L
Sbjct: 301 VVKNISFTLRPGET-LGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLNRRQLL 358
Query: 1320 DLRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIW-EALDKCQLGDEVRKKEGKLDSKV 1378
+R R+ ++ QDP S+++P QI E L Q ++E ++ + +
Sbjct: 359 PVRHRIQVVFQDP-------NSSLNP--RLNVLQIIEEGLRVHQPTLSAAQREQQVIAVM 409
Query: 1379 TENG----------ENWSMGQRQLVCLGRVLLKRRKILMLDEATASVD 1416
E G +S GQRQ + + R L+ + +++LDE T+S+D
Sbjct: 410 EEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLD 457
|
Length = 529 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 4e-07
Identities = 53/218 (24%), Positives = 94/218 (43%), Gaps = 53/218 (24%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT---KAYVAQSPWI 692
L +++LKV G V++CG G+GKS+L+ + G P GT + +
Sbjct: 21 LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYP--------HGTYEGEIIFEGEE-L 71
Query: 693 QSGKIED-----------------------NILFGKE------MDRERYNAVLDACSLEK 723
Q+ I D NI G E MD Y+A+ +K
Sbjct: 72 QASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMD---YDAMYLRA--QK 126
Query: 724 DLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFK 783
L L NL GQ+Q ++IA+AL + A + + D+P +++ + L
Sbjct: 127 LLAQLKLD--INPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLD 184
Query: 784 EVLLGLLNSKTV--LYVTHQVEFLPA-ADLVLVIKDGK 818
++ L + + +Y++H++ + A +D + VI+DG+
Sbjct: 185 --IIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGR 220
|
Length = 506 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 4e-07
Identities = 54/239 (22%), Positives = 99/239 (41%), Gaps = 34/239 (14%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWI--- 692
+ +I+ +V G + G G+GK++ ILG + G + G I
Sbjct: 18 VDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYL 77
Query: 693 -------QSGKIEDNILFG---KEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGI- 741
+ED + + K M + L A LE+ +VG++
Sbjct: 78 PEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAW-LER---------LEIVGKKTKK 127
Query: 742 --NLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNS-KTVLYV 798
LS G +Q+IQ A+ + ++ + D+PFS +D L K+ + L T+++
Sbjct: 128 IKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDP-VNVELLKDAIFELKEEGATIIFS 186
Query: 799 THQ---VEFLPAADLVLVIKDGKITQAGKYTDVINSGTDFMELVDAHKQALSTLDSIEG 854
+H+ VE L D +L++K G+ G D+ S ++++ +L L +I G
Sbjct: 187 SHRMEHVEEL--CDRLLMLKKGQTVLYGTVEDIRRSFGKKRLVIES-DLSLEELANIPG 242
|
Length = 300 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 5e-07
Identities = 58/254 (22%), Positives = 94/254 (37%), Gaps = 45/254 (17%)
Query: 1226 PSEPPLEIEESRPNHSWPSHGKIDLRDLQVRYAPHMPFVLRGISCTF-PGEKKTGIVGRT 1284
P+EI E I+L+++ VR +L +S PGE IVG
Sbjct: 20 KKRHPIEINEPL----------IELKNVSVRRNGKK--ILGDLSWQVNPGEHWA-IVGPN 66
Query: 1285 GSGKSTLIQTLFRIVEPAAGQILIDG-----IDI-----SLIGL------HDLRTRLSII 1328
G+GK+TL+ L P++G + + G + IGL R R ++
Sbjct: 67 GAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVR 126
Query: 1329 PQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMG 1388
V+ G S E+ T E L Q E + S G
Sbjct: 127 D---VVLSGFFASIGIYQEDLTAED----LAAAQWLLE----LLGAKHLADRPFGSLSQG 175
Query: 1389 QRQLVCLGRVLLKRRKILMLDEATASVDT-ATDNLIQQ--SLRQHFSDCTVITIAHRITS 1445
+++ V + R L+K ++L+LDE +D A + L+ + L ++ + H
Sbjct: 176 EQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEE 235
Query: 1446 VIDS-DMVLLLSHG 1458
+ LLL G
Sbjct: 236 IPPCFTHRLLLKEG 249
|
Length = 257 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 5e-07
Identities = 54/212 (25%), Positives = 98/212 (46%), Gaps = 43/212 (20%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKA-YVAQSPWIQS 694
L ++NLKV A+ G G+GKS+LL C+ G K SG++ G + + + +++
Sbjct: 14 LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALEN 73
Query: 695 G--------------KIEDNILFG-----------KEMDRERYNAVLDACSLEKDLEILS 729
G + DN+ G +M R+ A+ D E D++I
Sbjct: 74 GISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDT-KAIFD----ELDIDI-- 126
Query: 730 FGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL 789
D + LS Q Q I+IA+A +A I + D+P S++ +HLF ++
Sbjct: 127 --DPR---AKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFT--IIRK 179
Query: 790 LNSK--TVLYVTHQV-EFLPAADLVLVIKDGK 818
L + ++Y++H++ E D + +++DG+
Sbjct: 180 LKERGCGIVYISHKMEEIFQLCDEITILRDGQ 211
|
Length = 491 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 50.9 bits (123), Expect = 6e-07
Identities = 51/187 (27%), Positives = 80/187 (42%), Gaps = 49/187 (26%)
Query: 1249 DLRDLQVRYAPHMPFVLRGISCT-FPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1307
++R L V+ A +R +S GE GI G G+G++ L + LF + PA+G+I
Sbjct: 6 EVRGLSVKGA------VRDVSFEVRAGEI-VGIAGLVGNGQTELAEALFGLRPPASGEIT 58
Query: 1308 IDGIDISLIGLHD-LRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDE 1366
+DG ++ D +R ++ +P+D
Sbjct: 59 LDGKPVTRRSPRDAIRAGIAYVPED----------------------------------- 83
Query: 1367 VRKKEG-KLDSKVTEN---GENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNL 1422
RK+EG LD V EN S G +Q V L R L + ++L+LDE T VD
Sbjct: 84 -RKREGLVLDLSVAENIALSSLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAE 142
Query: 1423 IQQSLRQ 1429
I + +R+
Sbjct: 143 IYRLIRE 149
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (125), Expect = 6e-07
Identities = 54/201 (26%), Positives = 94/201 (46%), Gaps = 39/201 (19%)
Query: 633 NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCI-----LGEVPKISGTLKLCGTKAY-- 685
N +KD+++ A+ G G GKS++L I L +++G + L T Y
Sbjct: 17 NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDR 76
Query: 686 -------------VAQSP-WIQSGKIEDNILFGKEMD----RERYNAVLDACSLEKDLEI 727
V Q P + I DN++ G +++ R + ++++ L+
Sbjct: 77 GVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESS-----LKR 131
Query: 728 LSFGDQTVVGER----GINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFK 783
++ D+ V +R + LSGGQ+QR+ IAR + ++ L D+P SA+D S L
Sbjct: 132 VALWDE--VKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPI--STLKI 187
Query: 784 EVLLGLLNSK-TVLYVTHQVE 803
E L+ L K T++ VTH ++
Sbjct: 188 EELIEELKEKYTIIIVTHNMQ 208
|
Length = 252 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 6e-07
Identities = 54/195 (27%), Positives = 88/195 (45%), Gaps = 43/195 (22%)
Query: 1248 IDLRDLQVRYAP-HMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQI 1306
+ L D+ Y M F L GE+ I+G +G+GKSTL+ + + PA+G +
Sbjct: 2 LKLTDITWLYHHLPMRFDLT----VERGER-VAILGPSGAGKSTLLNLIAGFLTPASGSL 56
Query: 1307 LIDGIDISLIGLHDL----RTRLSIIPQDPVMFEG-TVRSNV----DP---LEEYTDEQI 1354
++G D H R +S++ Q+ +F TV N+ +P L E++
Sbjct: 57 TLNGQD------HTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKL 110
Query: 1355 WEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATAS 1414
+ + D + + G+L S GQRQ V L R L++ + IL+LDE ++
Sbjct: 111 HAIARQMGIEDLLARLPGQL-----------SGGQRQRVALARCLVREQPILLLDEPFSA 159
Query: 1415 VDTATDNLIQQSLRQ 1429
+D A LRQ
Sbjct: 160 LDPA--------LRQ 166
|
Length = 232 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 6e-07
Identities = 53/209 (25%), Positives = 94/209 (44%), Gaps = 27/209 (12%)
Query: 1238 PNHSWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKT--------------GIVGR 1283
G + + + L G+S ++ G+K G++G
Sbjct: 17 SPIERKHQGISEAKASIPGSMSTVAIDLAGVSKSY-GDKAVVNGLSFTVASGECFGLLGP 75
Query: 1284 TGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSIIPQ-DPVMFEGTVRSN 1342
G+GKST+ + + + P AG+I + G+ + R R+ ++PQ D + E TVR N
Sbjct: 76 NGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARIGVVPQFDNLDLEFTVREN 134
Query: 1343 VDPLEEY---TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVL 1399
+ Y + +I EA+ L E + E K D++V++ S G ++ + L R L
Sbjct: 135 LLVFGRYFGMSTREI-EAVIPSLL--EFARLESKADARVSD----LSGGMKRRLTLARAL 187
Query: 1400 LKRRKILMLDEATASVDTATDNLIQQSLR 1428
+ ++L+LDE T +D +LI + LR
Sbjct: 188 INDPQLLILDEPTTGLDPHARHLIWERLR 216
|
Length = 340 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 6e-07
Identities = 60/218 (27%), Positives = 93/218 (42%), Gaps = 43/218 (19%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKS-------SLLSCILGEV-------PKISGTLKL 679
L D+NL+V G + + G GSGKS +LL G+V +
Sbjct: 24 LALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83
Query: 680 CGTKAYVAQSP--WIQSGKIEDNILFGKE-------MDRERYNAVLDACSLEKDLEILSF 730
V Q+P I + +E+++ FG E RER + L + E
Sbjct: 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGM---YEYRRH 140
Query: 731 GDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL- 789
LSGGQKQR+ IA L + +FD+P + +D +G +EV+ +
Sbjct: 141 APHL--------LSGGQKQRVAIAGILAMRPECIIFDEPTAMLDP-SGR---REVVNTIK 188
Query: 790 -LNSK---TVLYVTHQVEFLPAADLVLVIKDGKITQAG 823
LN K T++ +TH +E AD ++V+ GK+ G
Sbjct: 189 ELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEG 226
|
Length = 280 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 6e-07
Identities = 51/190 (26%), Positives = 77/190 (40%), Gaps = 46/190 (24%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGT---------LKLCG--- 681
P LK+++L V G VA+ G G+GKS+LL + SG + L
Sbjct: 22 PVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81
Query: 682 ---------TKAYVAQ----SPWIQSGKIEDNILFGKEMDRERYNAVLDACSLEKDLEIL 728
T YV+Q P + + ++ L E R A A L L I
Sbjct: 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLL--ERGVPREAARARARELLARLNI- 138
Query: 729 SFGDQTVVGERGINL-----SGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFK 783
ER +L SGG++QR+ IAR D I L D+P +++DA +
Sbjct: 139 --------PERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAAN-----R 185
Query: 784 EVLLGLLNSK 793
+V++ L+
Sbjct: 186 QVVVELIAEA 195
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 6e-07
Identities = 60/221 (27%), Positives = 94/221 (42%), Gaps = 67/221 (30%)
Query: 1264 VLRGISCTF-PGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLR 1322
+L+ IS +F PG K G++G G+GKSTL+ RI + G+D G
Sbjct: 20 ILKDISLSFFPG-AKIGVLGLNGAGKSTLL----RI---------MAGVDKEFNG----E 61
Query: 1323 TRLS------IIPQDPVMFEG-TVRSNV----------------------DPLEEYT--- 1350
R + +PQ+P + TVR NV +P +
Sbjct: 62 ARPAPGIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALL 121
Query: 1351 DEQ--IWEALDKCQLGDEVRKKEGKL--------DSKVTENGENWSMGQRQLVCLGRVLL 1400
EQ + E +D D RK E + D+ VT S G+R+ V L R+LL
Sbjct: 122 AEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVT----KLSGGERRRVALCRLLL 177
Query: 1401 KRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAH 1441
+ +L+LDE T +D + ++Q L+++ TV+ + H
Sbjct: 178 SKPDMLLLDEPTNHLDAESVAWLEQHLQEYPG--TVVAVTH 216
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 6e-07
Identities = 59/241 (24%), Positives = 109/241 (45%), Gaps = 24/241 (9%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSG 695
L +++ + G V G G+GKS+ + I G +P SG++++CG V Q+P
Sbjct: 18 LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGED--VLQNPKEVQR 75
Query: 696 KI----EDNILFGKEMDRE--RYNA----VLDACSLEKDLEILSFGDQTVVGERGIN-LS 744
I E N L+ RE ++ A + ++ E++ + I LS
Sbjct: 76 NIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLS 135
Query: 745 GGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEF 804
G +QR+ +A+AL D + + D+P + +D + + + V+ + KT++ TH ++
Sbjct: 136 KGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEI-RNVIKNIGKDKTIILSTHIMQE 194
Query: 805 LPA-ADLVLVIKDGKITQAGKYTDVINSGT------DFMELVDAHKQALSTLDSI-EGRP 856
+ A D V++I GKI K ++ + +F E +D Q TL+ I +
Sbjct: 195 VEAICDRVIIINKGKIVADKKLDELSAANKKQVIEVEFEEQIDL--QLFETLEEISSVKN 252
Query: 857 L 857
Sbjct: 253 T 253
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 7e-07
Identities = 42/202 (20%), Positives = 81/202 (40%), Gaps = 42/202 (20%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------KAYVAQS 689
D++ + G + + G G+GK++LL + G + +G + G ++Y
Sbjct: 18 FSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQAL 77
Query: 690 PWI--QSG-----KIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGI- 741
++ Q G +N+ F + + + E L VG G+
Sbjct: 78 LYLGHQPGIKTELTALENLHF--------WQRFHGSGNAATIWEAL-----AQVGLAGLE 124
Query: 742 -----NLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKT-- 794
LS GQ++R+ +AR A +++ D+PF+A+D +L L+ +
Sbjct: 125 DLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEG-----VALLTALMAAHAAQ 179
Query: 795 ---VLYVTHQVEFLPAADLVLV 813
VL THQ + +A + +
Sbjct: 180 GGIVLLTTHQPLPIASAQIRRL 201
|
Length = 209 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 8e-07
Identities = 46/207 (22%), Positives = 77/207 (37%), Gaps = 36/207 (17%)
Query: 1264 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRT 1323
L +S T + ++G +G GK+TL+ + V P+ G I ++G I G
Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPG-----A 74
Query: 1324 RLSIIPQDPVMFEG-TVRSNVD--------PLEEYTDEQIWEALDKCQLGDEVRKKEGKL 1374
++ Q+ + V NV + E + L L K +L
Sbjct: 75 ERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRR-EIAHQMLALVGLEGAEHKYIWQL 133
Query: 1375 DSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSL-----RQ 1429
S G RQ V + R L ++L+LDE ++D T +Q+ L
Sbjct: 134 -----------SGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQET 182
Query: 1430 HFSDCTVITIAHRITS--VIDSDMVLL 1454
V+ I H I + + +V+L
Sbjct: 183 GKQ---VLLITHDIEEALFLATRLVVL 206
|
Length = 259 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 8e-07
Identities = 67/256 (26%), Positives = 111/256 (43%), Gaps = 45/256 (17%)
Query: 1248 IDLRDLQVRY--APHMPFVLRGISCTF-PGEKKTGIVGRTGSGKSTLIQTLFRIV-EPAA 1303
+ +R+L V + ++GIS GE +VG +GSGKS ++ ++ PAA
Sbjct: 7 LSIRNLSVAFHQEGGTVEAVKGISFDIEAGET-LALVGESGSGKSVTALSILGLLPSPAA 65
Query: 1304 ----GQILIDGIDI---SLIGLHDLR-TRLSIIPQDPVMFEGTVRSNVDPLEEYT-DEQI 1354
G IL DG D+ S L +R ++ +I Q+P+ ++++PL +T +Q+
Sbjct: 66 AHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPM-------TSLNPL--HTIGKQL 116
Query: 1355 WEAL-------------DKCQLGDEV--RKKEGKLDSKVTENGENWSMGQRQLVCLGRVL 1399
E L +L + V + E +LD+ E S GQRQ V + L
Sbjct: 117 AEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHE----LSGGQRQRVMIAMAL 172
Query: 1400 LKRRKILMLDEATASVDTATDNLIQQSLR--QHFSDCTVITIAHRITSVID-SDMVLLLS 1456
+L+ DE T ++D I L+ Q ++ I H + V +D V ++
Sbjct: 173 ANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQ 232
Query: 1457 HGLIEEYDSPRKLLEN 1472
HG I E + L
Sbjct: 233 HGEIVETGTTETLFAA 248
|
Length = 534 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 8e-07
Identities = 53/220 (24%), Positives = 99/220 (45%), Gaps = 37/220 (16%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKL---------CGTKA-- 684
++D++L V G V + G G+GK++ ++G VP+ +G + + +A
Sbjct: 19 VEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARR 78
Query: 685 ---YVAQSPWI-QSGKIEDNIL--------FGKEMDRERYNAVLDACSLEKDLEILSFGD 732
Y+ Q I + + DN++ E +R N +++ + I D
Sbjct: 79 GIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELME------EFHIEHLRD 132
Query: 733 QTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNS 792
G +LSGG+++R++IARAL + L D+PF+ VD + + K ++ L +S
Sbjct: 133 SM-----GQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDI-KRIIEHLRDS 186
Query: 793 KT-VLYVTHQV-EFLPAADLVLVIKDGKITQAGKYTDVIN 830
VL H V E L + ++ G + G T+++
Sbjct: 187 GLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226
|
Length = 241 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 8e-07
Identities = 64/226 (28%), Positives = 109/226 (48%), Gaps = 36/226 (15%)
Query: 1261 MPFVL--RGISCTFPGEKK-------------TGIVGRTGSGKSTLIQTLFRIVEPAA-- 1303
M ++L + I+ TF G K + G G+GKSTL++ L V P
Sbjct: 2 MEYLLEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSG-VYPHGTY 60
Query: 1304 -GQILIDGIDISLIGLHDL-RTRLSIIPQDPVMFEG-TVRSNVDPLEEYTDEQI--WEAL 1358
G+I+ +G ++ + D R ++II Q+ + + +V N+ E T I ++A+
Sbjct: 61 EGEIIFEGEELQASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAM 120
Query: 1359 -DKCQ-LGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASV- 1415
+ Q L ++ KLD N +GQ+QLV + + L K+ ++L+LDE TAS+
Sbjct: 121 YLRAQKLLAQL-----KLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLT 175
Query: 1416 --DTATDNLIQQSLRQHFSDCTVITIAHRITSVID-SDMVLLLSHG 1458
+TA I + L+ H C I I+H++ V SD + ++ G
Sbjct: 176 ESETAVLLDIIRDLKAHGIAC--IYISHKLNEVKAISDTICVIRDG 219
|
Length = 506 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 8e-07
Identities = 41/165 (24%), Positives = 73/165 (44%), Gaps = 36/165 (21%)
Query: 1269 SCTFPGEKK--TGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLS 1326
+F +K G +G G+GKST ++ + + P +G + + G D+ L +++ +
Sbjct: 20 EVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDV-LQNPKEVQRNIG 78
Query: 1327 IIPQ-DPVMFEGTVRSNVDPLEEY--------------TDEQIWEALDKCQLGDEVRKKE 1371
+P+ +P+ + VR EY +++ E ++ L E KK
Sbjct: 79 YLPEHNPLYLDMYVR-------EYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKI 131
Query: 1372 GKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVD 1416
G+L S G RQ V L + L+ K+L+LDE T +D
Sbjct: 132 GQL-----------SKGYRQRVGLAQALIHDPKVLILDEPTTGLD 165
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 9e-07
Identities = 54/194 (27%), Positives = 87/194 (44%), Gaps = 23/194 (11%)
Query: 1265 LRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTR 1324
LR S T PG +VG GSGKSTL + L V A+G+I I G L+
Sbjct: 23 LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTR----QALQKN 78
Query: 1325 L-SIIPQD-------PVMFEGTVRSNVDPLEEYTDE---QIWEALDKCQLGDEVRKKEGK 1373
L + +PQ PV+ E V + Y + + D+ Q+ +
Sbjct: 79 LVAYVPQSEEVDWSFPVLVEDVVM-----MGRYGHMGWLRRAKKRDR-QIVTAALARVDM 132
Query: 1374 LDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSD 1433
++ + + GE S GQ++ V L R + ++ ++++LDE VD T+ I LR+ +
Sbjct: 133 VEFRHRQIGE-LSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDE 191
Query: 1434 -CTVITIAHRITSV 1446
T++ H + SV
Sbjct: 192 GKTMLVSTHNLGSV 205
|
Length = 272 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 1e-06
Identities = 54/199 (27%), Positives = 89/199 (44%), Gaps = 23/199 (11%)
Query: 1264 VLRGISCTF-PGEKKTGIV---GRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIG-- 1317
VL I+ PGE IV G +GSGK+TL+ + + G + + G ++
Sbjct: 20 VLFDINLEINPGE----IVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEK 75
Query: 1318 -LHDLRTRLSIIPQDPVMFEG-TVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLD 1375
L LR + I Q + T R NV E ++ + + + + G L
Sbjct: 76 ELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQ--EARERARAMLEAVG-LG 132
Query: 1376 SKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATD----NLIQQSLRQHF 1431
+ N S GQ+Q V + R L+ R K+++ DE TA++D+ + L+Q+ R+
Sbjct: 133 DHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQ- 191
Query: 1432 SDCTVITIAH--RITSVID 1448
CT++ + H RI V D
Sbjct: 192 -GCTILIVTHDNRILDVAD 209
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 1e-06
Identities = 50/232 (21%), Positives = 80/232 (34%), Gaps = 49/232 (21%)
Query: 630 SSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------- 682
P L +++L + G V + G G GKS+L +LG GT+ G
Sbjct: 21 KQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDR 80
Query: 683 ---------------KAYVAQSP-----WIQSGKIEDNILFGKEMDRERYNAVLDACSLE 722
+ A +P I + + + R +LD L
Sbjct: 81 KQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLR 140
Query: 723 KDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLF 782
+ + LSGGQ QRI IARAL + + D+ S +D
Sbjct: 141 SE----------DADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMV-----L 185
Query: 783 KEVLLGLLNS------KTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYTD 827
+ V+L LL L++TH + + + V V+ G+I +
Sbjct: 186 QAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQ 237
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 1e-06
Identities = 62/245 (25%), Positives = 98/245 (40%), Gaps = 48/245 (19%)
Query: 620 IADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKL 679
I G H + I+L + G + + G GSGKS+L +L +P G ++
Sbjct: 288 IKGGFLRRT-VDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPS-QGEIRF 345
Query: 680 CGT----------KAY------VAQSPW------------IQSG-KIEDNILFGKEMDRE 710
G + V Q P+ I+ G ++ + L E D +
Sbjct: 346 DGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERD-Q 404
Query: 711 RYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPF 770
R L+ L D SGGQ+QRI IARAL ++ L D+P
Sbjct: 405 RVIEALEEVGL----------DPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPT 454
Query: 771 SAVDAHTGSHLFKEVLLGLLNSK---TVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYT 826
SA+D + + LL L K + L+++H + + A V+V++DGKI + G
Sbjct: 455 SALDRSVQAQVLD--LLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTE 512
Query: 827 DVINS 831
V +
Sbjct: 513 AVFAN 517
|
Length = 534 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 1e-06
Identities = 46/215 (21%), Positives = 83/215 (38%), Gaps = 45/215 (20%)
Query: 1279 GIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSIIPQD------- 1331
G++G G+GK+TL++ + ++ PA G + + G + +PQ
Sbjct: 10 GLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----KGWRHIGYVPQRHEFAWDF 64
Query: 1332 PVMFEGTV------------RSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVT 1379
P+ TV R V D AL + L + + G+L
Sbjct: 65 PISVAHTVMSGRTGHIGWLRRPCVADFAAVRD-----ALRRVGLTELADRPVGEL----- 114
Query: 1380 ENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNL---IQQSLRQHFSDCTV 1436
S GQRQ V + R L R +L+LDE +D T L + L + +
Sbjct: 115 ------SGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAG--AGTAI 166
Query: 1437 ITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLE 1471
+ H + + + ++L +G + +P++L +
Sbjct: 167 LMTTHDLAQAMATCDRVVLLNGRVIADGTPQQLQD 201
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 1e-06
Identities = 58/267 (21%), Positives = 105/267 (39%), Gaps = 23/267 (8%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG-----TKAYVAQ 688
+ +N KV G G G+GK++ + + + SGT ++ G V +
Sbjct: 7 KAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRR 66
Query: 689 SPWI--QSGKIEDNI-------LFGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGER 739
S I Q +++++ + G+ + A A L + E+ D+ V
Sbjct: 67 SIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGT-- 124
Query: 740 GINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVT 799
SGG ++R+ IA +L D+ D+P + +D T ++ + T+L T
Sbjct: 125 ---YSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTT 181
Query: 800 HQVEFLPA-ADLVLVIKDGKITQAGKYTDVINS-GTDFMELVDAHKQALSTLDSIEGRPL 857
H +E D + +I G+I G ++ G D +E Q+L S+ L
Sbjct: 182 HYMEEADKLCDRIAIIDHGRIIAEGTPEELKRRLGKDTLESRPRDIQSLKVEVSMLIAEL 241
Query: 858 SEKGSANGENDGTSATDGVVKEVENKE 884
E G G T +D + V + +
Sbjct: 242 GETG--LGLLAVTVDSDRIKILVPDGD 266
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 1e-06
Identities = 54/229 (23%), Positives = 89/229 (38%), Gaps = 48/229 (20%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK-------AYVA- 687
L D++ V G + G G+GK++L+ I G+ G + G +A
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIAR 80
Query: 688 -------QSPWI-QSGKIEDN-------------ILFGKEMDRERYNAVLDACSLEKDLE 726
Q P + ++ + +N LF + ER +++ L
Sbjct: 81 AGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERR-------RIDELLA 133
Query: 727 ILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFS----AVDAHTGSHLF 782
+ GD+ LS GQKQ ++I L QD + L D+P + A T
Sbjct: 134 TIGLGDE--RDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTA---- 187
Query: 783 KEVLLGLLNSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYTDVIN 830
E+L L ++L V H + F+ AD V V+ +G + G +V N
Sbjct: 188 -ELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQN 235
|
Length = 249 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 1e-06
Identities = 56/191 (29%), Positives = 92/191 (48%), Gaps = 12/191 (6%)
Query: 1265 LRGISCTF-PGEKKTGIVGRTGSGKSTLIQTLFRIVEPAA--GQILIDGIDISLIGLHDL 1321
L GI PGE G+ G G+GKSTL++ L + G+I G + + D
Sbjct: 17 LDGIDLEVRPGEC-VGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDT 75
Query: 1322 -RTRLSIIPQDPVMF-EGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLD-SKV 1378
R + II Q+ + E +V N+ E T A + L + +E +LD V
Sbjct: 76 ERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNV 135
Query: 1379 TENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTA-TDNL--IQQSLRQHFSDCT 1435
T ++ GQ+QLV + + L K+ ++L+LDE ++S+ T+ L I + L+ H C
Sbjct: 136 TRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVAC- 194
Query: 1436 VITIAHRITSV 1446
+ I+H++ V
Sbjct: 195 -VYISHKLNEV 204
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 1e-06
Identities = 60/242 (24%), Positives = 106/242 (43%), Gaps = 28/242 (11%)
Query: 1248 IDLRDLQVRYAPHMPF---VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAG 1304
I+L+++ Y PF L ++ T T +G TGSGKST++Q L + P G
Sbjct: 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQG 62
Query: 1305 QILIDGIDISLIG----LHDLRTRLSIIPQDP--VMFEGTVRSNV--DPL-----EEYTD 1351
+ +D I+ + +R ++ ++ Q P +FE TV +V P +E +
Sbjct: 63 SVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAE 122
Query: 1352 EQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEA 1411
E L + + + +K N S GQ + V + +L KIL+LDE
Sbjct: 123 ALAREKLALVGISESLFEK----------NPFELSGGQMRRVAIAGILAMEPKILVLDEP 172
Query: 1412 TASVDTATDNLIQQSLRQ-HFSDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKL 1469
TA +D + ++ H S T++ + H + V + +D V +L G + P+ +
Sbjct: 173 TAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI 232
Query: 1470 LE 1471
+
Sbjct: 233 FQ 234
|
Length = 280 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 1e-06
Identities = 39/132 (29%), Positives = 66/132 (50%), Gaps = 16/132 (12%)
Query: 685 YVAQSPWIQSGKIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGIN-L 743
YV P + GK+ + L K +R +++ V++ LE L+ R ++ L
Sbjct: 169 YVDLIPKVVKGKVGE--LLKKVDERGKFDEVVERLGLENVLD------------RDVSEL 214
Query: 744 SGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVE 803
SGG+ QR+ IA AL +DAD+Y FD+P S +D + + + + K V+ V H +
Sbjct: 215 SGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLA 274
Query: 804 FLPA-ADLVLVI 814
L +D V ++
Sbjct: 275 VLDYLSDFVHIL 286
|
Length = 591 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 1e-06
Identities = 56/249 (22%), Positives = 103/249 (41%), Gaps = 75/249 (30%)
Query: 617 AIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGT 676
A+E+ + +D + P K++NL + G R+A+ G G GK++LL ++GE+ SGT
Sbjct: 319 ALEVENLTKGFD---NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGT 375
Query: 677 LKLCGTKAYVAQSPWIQSGKI--------EDNILFGKEMDRERYNAVLDACSL---EKDL 725
+K W ++ I D F ++ + D S E D
Sbjct: 376 VK------------WSENANIGYYAQDHAYD---FENDLT------LFDWMSQWRQEGD- 413
Query: 726 EILSFGDQTVVGERGI----------------NLSGGQKQRIQIARALYQDADIYLFDDP 769
+Q V RG LSGG+K R+ + + Q ++ + D+P
Sbjct: 414 -----DEQAV---RGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEP 465
Query: 770 FSAVDAHTGSHLFKEVL----LGLLNSK-TVLYVTHQVEFLPA-ADLVLVIKDGKITQ-A 822
+H+ E + + L + T+++V+H EF+ + A ++ I + +
Sbjct: 466 --------TNHMDMESIESLNMALEKYEGTLIFVSHDREFVSSLATRIIEITPDGVVDFS 517
Query: 823 GKYTDVINS 831
G Y + + S
Sbjct: 518 GTYEEYLRS 526
|
Length = 530 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 1e-06
Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 15/91 (16%)
Query: 685 YVAQSPWIQSGKIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGI-NL 743
YV P GK+ + L K+ +R + + ++D L V +R I L
Sbjct: 95 YVDLIPKAVKGKVGE--LLKKKDERGKLDELVDQLELRH------------VLDRNIDQL 140
Query: 744 SGGQKQRIQIARALYQDADIYLFDDPFSAVD 774
SGG+ QR+ IA AL +DAD Y FD+P S +D
Sbjct: 141 SGGELQRVAIAAALARDADFYFFDEPSSYLD 171
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 2e-06
Identities = 64/252 (25%), Positives = 107/252 (42%), Gaps = 48/252 (19%)
Query: 1248 IDLRDLQVRYAPHMPFVLRGISCTF-PGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQI 1306
I++++L ++ H VL GI PGE I+G +GSGK+TL++ + + +P AG I
Sbjct: 4 IEVKNLVKKF--HGQTVLHGIDLEVKPGEV-VAIIGPSGSGKTTLLRCINLLEQPEAGTI 60
Query: 1307 LIDGIDI----------SLI--------------GLHDLRTRLSIIPQDPVMFEGTVRSN 1342
+ I I LI L RT L I + PV+ +G +
Sbjct: 61 RVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKE- 119
Query: 1343 VDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKR 1402
EA E+ K G L K T S GQ+Q V + R L R
Sbjct: 120 -------------EAT---ARARELLAKVG-LAGKETSYPRRLSGGQQQRVAIARALAMR 162
Query: 1403 RKILMLDEATASVDTATDNLIQQSLRQHFSDC-TVITIAHRITSVID-SDMVLLLSHGLI 1460
++++ DE T+++D + ++RQ + T++ + H ++ D +D + + G I
Sbjct: 163 PEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRI 222
Query: 1461 EEYDSPRKLLEN 1472
E + L +
Sbjct: 223 VEQGPAKALFAD 234
|
Length = 250 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 2e-06
Identities = 59/237 (24%), Positives = 115/237 (48%), Gaps = 30/237 (12%)
Query: 1248 IDLRDLQVRYAPHMPFVLRGISCT-FPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQI 1306
++LR + + V+ + T GE T ++G +G GK+T+++ + P +G+I
Sbjct: 15 VELRGISKSFDGKE--VISNLDLTINNGEFLT-LLGPSGCGKTTVLRLIAGFETPDSGRI 71
Query: 1307 LIDGIDISLIGLHDLRTRLSIIPQDPVMF-EGTVRSNVD--------PLEEYTDEQIWEA 1357
++DG DI+ + ++ + Q +F TV NV P E ++ EA
Sbjct: 72 MLDGQDIT--HVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAE-ITPRVMEA 128
Query: 1358 LDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDT 1417
L QL + ++K +L S GQ+Q V + R ++ + K+L+LDE+ +++D
Sbjct: 129 LRMVQLEEFAQRKPHQL-----------SGGQQQRVAIARAVVNKPKVLLLDESLSALDY 177
Query: 1418 ATDNLIQQSLR--QHFSDCTVITIAH-RITSVIDSDMVLLLSHGLIEEYDSPRKLLE 1471
+Q L+ Q T + + H + ++ SD ++++ G IE+ +PR++ E
Sbjct: 178 KLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYE 234
|
Length = 375 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 2e-06
Identities = 37/108 (34%), Positives = 57/108 (52%), Gaps = 7/108 (6%)
Query: 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1307
+D+R + F IS T P K T I+G +G GK+TL++ + + P G+IL
Sbjct: 8 VDMRGVSFTRGNRCIF--DNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEIL 65
Query: 1308 IDGIDI---SLIGLHDLRTRLSIIPQDPVMF-EGTVRSNVD-PLEEYT 1350
DG +I S L+ +R R+S++ Q +F + V NV PL E+T
Sbjct: 66 FDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT 113
|
Length = 269 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 2e-06
Identities = 41/170 (24%), Positives = 71/170 (41%), Gaps = 30/170 (17%)
Query: 1273 PGEKKTGIVGRTGSGKSTLIQTLFRIVEPA---AGQILIDGIDISLIGLHDLRTRLSIIP 1329
GE T ++G +G GKSTL+ + + G++ ++ + ++ + ++ I+
Sbjct: 27 KGEIVT-LMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAA--QRQIGILF 83
Query: 1330 QDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRK------KEGKLDSKVTENGE 1383
QD ++F +V + + AL G+ R + LD ++
Sbjct: 84 QDALLFP---HLSVG-------QNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPA 133
Query: 1384 NWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSD 1433
S GQR V L R LL + K L+LDE + +D A LR F
Sbjct: 134 TLSGGQRARVALLRALLAQPKALLLDEPFSRLDVA--------LRDQFRQ 175
|
Length = 213 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 2e-06
Identities = 63/226 (27%), Positives = 99/226 (43%), Gaps = 23/226 (10%)
Query: 1250 LRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTL--FRIVEPAAGQIL 1307
++DL V +L+G++ T + I+G GSGKSTL T+ E G+IL
Sbjct: 6 IKDLHVEVEGKKE-ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEIL 64
Query: 1308 IDGIDISLIGLHDLRTRLSIIP--QDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGD 1365
DG DI + + R R I Q PV G +N D L + + +
Sbjct: 65 FDGEDILELSPDE-RARAGIFLAFQYPVEIPGV--TNSDFLRAAMNARRGARGILPEFIK 121
Query: 1366 EVRKKEGKL--DSKVTENG--ENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDN 1421
E+++K L D + E E +S G+++ + ++LL K+ +LDE + +D D
Sbjct: 122 ELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLD--IDA 179
Query: 1422 LIQ-----QSLRQHFSDCTVITIAH--RITSVIDSDMVLLLSHGLI 1460
L +LR+ V+ I H R+ I D V +L G I
Sbjct: 180 LKIVAEGINALRE--EGRGVLIITHYQRLLDYIKPDKVHVLYDGRI 223
|
Length = 251 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 2e-06
Identities = 55/222 (24%), Positives = 94/222 (42%), Gaps = 45/222 (20%)
Query: 637 KDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGT----------LKLCGT---- 682
+D++ ++ G + + G GSGK++LL CI G + +GT L
Sbjct: 23 RDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAE 82
Query: 683 KAYVAQSPWIQSGKIEDNILFGKEMD-------RERYNAVLD---------ACSLEKDLE 726
+ + ++ W G + N G M ER A+ A +++E
Sbjct: 83 RRRLLRTEW---GFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVE 139
Query: 727 ILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVL 786
I D + + SGG +QR+QIAR L + D+P +D + L ++L
Sbjct: 140 I----DLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLL-DLL 194
Query: 787 LGLLNSK--TVLYVTHQ---VEFLPAADLVLVIKDGKITQAG 823
GL+ V+ VTH L AD ++V+K G++ ++G
Sbjct: 195 RGLVRELGLAVVIVTHDLAVARLL--ADRLMVMKQGQVVESG 234
|
Length = 258 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 2e-06
Identities = 47/186 (25%), Positives = 76/186 (40%), Gaps = 24/186 (12%)
Query: 649 VAVCGTVGSGKSSLLSCILGEV-PKISGTLKLCGTKAYVAQSPWI---QSGKIEDNILFG 704
+ + G G GK++ + + G + P T +Y Q +I G + D +L
Sbjct: 28 IGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQ--YIKADYEGTVRD-LLSS 84
Query: 705 KEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIY 764
++ Y + K L+I D+ V LSGG+ QR+ IA L +DADIY
Sbjct: 85 I--TKDFYTHPYFKTEIAKPLQIEQILDREVP-----ELSGGELQRVAIAACLSKDADIY 137
Query: 765 LFDDPFSAVDAHTGSHLFKEV-LLGLLNSKTVLYVTHQVEFLPA---ADLVLVIKDGKIT 820
L D+P + +D K + N KT V H + + AD ++V +G
Sbjct: 138 LLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEH--DIIMIDYLADRLIVF-EG--- 191
Query: 821 QAGKYT 826
+
Sbjct: 192 EPSVNG 197
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 2e-06
Identities = 56/213 (26%), Positives = 97/213 (45%), Gaps = 40/213 (18%)
Query: 646 GMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKI-EDNILFG 704
G +AV G GSGKS+LL+ + G + + T + + ++G + +D+IL+
Sbjct: 94 GEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYP 153
Query: 705 KEMDRERYNAVLDACSLEKDLEILSFGDQTVVGE---------------------RGINL 743
RE L CSL + + L+ ++ +V E RGI
Sbjct: 154 HLTVRE----TLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGI-- 207
Query: 744 SGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNS-KTVLYVTHQV 802
SGG+++R+ IA + + + + D+P S +DA T ++ L L KT++ HQ
Sbjct: 208 SGGERKRVSIAHEMLINPSLLILDEPTSGLDA-TAAYRLVLTLGSLAQKGKTIVTSMHQ- 265
Query: 803 EFLPAA------DLVLVIKDGKITQAGKYTDVI 829
P++ D VLV+ +G+ GK +D +
Sbjct: 266 ---PSSRVYQMFDSVLVLSEGRCLFFGKGSDAM 295
|
Length = 659 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 2e-06
Identities = 52/208 (25%), Positives = 97/208 (46%), Gaps = 35/208 (16%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG-TKAYVAQSPWIQS 694
L DI+ G A+ G G+GKS+LL + G +G++ + G + + + + +
Sbjct: 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAA 79
Query: 695 G--------------KIEDNILFGK------EMDRERYNAVLDACSLEKDLEILSFGD-Q 733
G + +N+ G+ ++R N ++I D
Sbjct: 80 GVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDI----DPD 135
Query: 734 TVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNS- 792
T + LS GQ+Q ++IA+AL ++A + FD+P S++ A LF+ ++ L +
Sbjct: 136 TPLKY----LSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFR--VIRELRAE 189
Query: 793 -KTVLYVTHQVEFLPA-ADLVLVIKDGK 818
+ +LYV+H++E + A D + V KDG+
Sbjct: 190 GRVILYVSHRMEEIFALCDAITVFKDGR 217
|
Length = 501 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 3e-06
Identities = 43/166 (25%), Positives = 69/166 (41%), Gaps = 17/166 (10%)
Query: 646 GMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGK 705
G + V G GSGK++LL + G P ++G + L G + Q I +L+
Sbjct: 26 GEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGP--LDF----QRDSIARGLLYLG 79
Query: 706 EMD--------RERYNAVLDACSLEKDLEILSFGDQTVVGERGIN-LSGGQKQRIQIARA 756
E S E+ E L+ +R + LS GQ++R+ +AR
Sbjct: 80 HAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARL 139
Query: 757 LYQDADIYLFDDPFSAVDAHTGSHLFKEVLLG-LLNSKTVLYVTHQ 801
L +++ D+P +A+D G F E + G V+ THQ
Sbjct: 140 LLSGRPLWILDEPTTALDK-AGVARFAEAMAGHCARGGMVVLTTHQ 184
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 48.5 bits (115), Expect = 3e-06
Identities = 31/170 (18%), Positives = 55/170 (32%), Gaps = 44/170 (25%)
Query: 649 VAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMD 708
+ + G GSGK++L + E+ G + + + + I
Sbjct: 5 ILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLII----------- 53
Query: 709 RERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDD 768
VG + + SG + R+ +A A D+ + D+
Sbjct: 54 ---------------------------VGGKKASGSGELRLRLALALARKLKPDVLILDE 86
Query: 769 PFSAVDAHTGSHLFKEVLLGLL------NSKTVLYVTHQVEFLPAADLVL 812
S +DA + L L LL + TV+ T+ + L A L
Sbjct: 87 ITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR 136
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 4e-06
Identities = 47/220 (21%), Positives = 84/220 (38%), Gaps = 38/220 (17%)
Query: 628 DISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVA 687
D+ + ++ V G + G G+GK++ L + G + +G + G V
Sbjct: 13 DVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFD--VV 70
Query: 688 QSPWIQSGKIEDNILFGKE--------------------MDRERYNAVLDACSLEKDLEI 727
+ P + + + + A L+ L L +
Sbjct: 71 KEP--AEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLE--ELADRLGM 126
Query: 728 LSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLL 787
D+ V G S G +Q++ IARAL D + L D+P + +D + +E +
Sbjct: 127 EELLDRRVGG-----FSTGMRQKVAIARALVHDPPVLLLDEPTTGLDV-MATRALREFIR 180
Query: 788 GLLNS-KTVLYVTH---QVEFLPAADLVLVIKDGKITQAG 823
L K +L+ TH +VE L D V+V+ G++ G
Sbjct: 181 QLRALGKCILFSTHIMQEVERL--CDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (118), Expect = 4e-06
Identities = 56/223 (25%), Positives = 96/223 (43%), Gaps = 33/223 (14%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAY---------- 685
LKDI +K+ + + G GSGKS+LL + + +K+ G Y
Sbjct: 26 LKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDA 85
Query: 686 ---------VAQSP-WIQSGKIEDNILFGKEMDRERYNAVLDACSLEKDLE--ILSFGDQ 733
V Q P I DNI + + + + + ++K +E + G
Sbjct: 86 IKLRKEVGMVFQQPNPFPHLSIYDNIAYPL-----KSHGIKEKREIKKIVEECLRKVGLW 140
Query: 734 TVVGER----GINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL 789
V +R LSGGQ+QR+ IARAL + L D+P S +D S ++++ L
Sbjct: 141 KEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDI-VNSQAIEKLITEL 199
Query: 790 LNSKTVLYVTHQVEFLP-AADLVLVIKDGKITQAGKYTDVINS 831
N ++ V+H + + AD V + +G++ + G ++ S
Sbjct: 200 KNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTS 242
|
Length = 257 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 4e-06
Identities = 59/218 (27%), Positives = 89/218 (40%), Gaps = 40/218 (18%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILG----EVPKISGTLKLCGT--------- 682
LK +NL V G A+ G GSGKS+L I+G EV G + G
Sbjct: 20 LKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEV--TEGEILFDGEDILELSPDE 77
Query: 683 KA----YVA-QSPW-IQSGKIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQTVV 736
+A ++A Q P I D + R NA A + + ++
Sbjct: 78 RARAGIFLAFQYPVEIPGVTNSDFL-------RAAMNARRGARGILPEFIKELKEKAELL 130
Query: 737 G------ERGIN--LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLG 788
G ER +N SGG+K+R +I + L + + + D+P S +D + E +
Sbjct: 131 GLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALK-IVAEGINA 189
Query: 789 LLNSKT-VLYVTHQVEFLPA--ADLVLVIKDGKITQAG 823
L VL +TH L D V V+ DG+I ++G
Sbjct: 190 LREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSG 227
|
Length = 251 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 4e-06
Identities = 31/92 (33%), Positives = 41/92 (44%), Gaps = 13/92 (14%)
Query: 1251 RDLQVRYAPHMPFVLRGISCT-FPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILID 1309
R L Y P R +S +PGE GIVG +GSGK+TL+ L + P AG++
Sbjct: 10 RGLTKLYGPRKGC--RDVSFDLYPGEV-LGIVGESGSGKTTLLNALSARLAPDAGEVHYR 66
Query: 1310 GIDISLIGLHDL---------RTRLSIIPQDP 1332
D L L+ L RT + Q P
Sbjct: 67 MRDGQLRDLYALSEAERRRLLRTEWGFVHQHP 98
|
Length = 258 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 5e-06
Identities = 44/176 (25%), Positives = 69/176 (39%), Gaps = 35/176 (19%)
Query: 646 GMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK------------AYVAQSPWIQ 693
G + V G G GK++LL + G + SG ++ GT Y+ P ++
Sbjct: 26 GEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLK 85
Query: 694 SG-KIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGIN------LSGG 746
+N+ F + + DA L VG G LS G
Sbjct: 86 PELSALENLHFWAAIHGGAQRTIEDA--LAA------------VGLTGFEDLPAAQLSAG 131
Query: 747 QKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSK-TVLYVTHQ 801
Q++R+ +AR A +++ D+P +A+D G L +L L VL THQ
Sbjct: 132 QQRRLALARLWLSRAPLWILDEPTTALDK-AGVALLAGLLRAHLARGGIVLLTTHQ 186
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 5e-06
Identities = 52/236 (22%), Positives = 97/236 (41%), Gaps = 44/236 (18%)
Query: 626 SWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLK------L 679
+K ++ + G +A+ G GSGKS+L + G + SG +
Sbjct: 19 GLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLH 78
Query: 680 CGTKAYVAQ-------------SPWIQSGKIEDNIL-FGKEMDRERYNAVLDACSLEKDL 725
G ++ ++ +P ++ G+I D L +++ E+ ++
Sbjct: 79 FGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRR--------KQIF 130
Query: 726 EILS----FGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHL 781
E L D L+ GQKQR+ +ARAL I + D+ +++D S L
Sbjct: 131 ETLRMVGLLPDHANYYPH--MLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQL 188
Query: 782 FKEVL-----LGLLNSKTVLYVTHQVEFLP-AADLVLVIKDGKITQAGKYTDVINS 831
+L G+ + +YVT + + +D VLV+ +G++ + G DV+ S
Sbjct: 189 INLMLELQEKQGI----SYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVLAS 240
|
Length = 267 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 5e-06
Identities = 42/142 (29%), Positives = 61/142 (42%), Gaps = 27/142 (19%)
Query: 1279 GIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSIIPQDPVMFEGT 1338
GI+G G GK+T I+ L +++P G I I+ +S I +EGT
Sbjct: 29 GILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSY-------KPQYIKAD----YEGT 77
Query: 1339 VR---SNVDPLEEYTDEQ-IWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVC 1394
VR S++ + YT E Q+ E LD +V E S G+ Q V
Sbjct: 78 VRDLLSSITK-DFYTHPYFKTEIAKPLQI-------EQILDREVPE----LSGGELQRVA 125
Query: 1395 LGRVLLKRRKILMLDEATASVD 1416
+ L K I +LDE +A +D
Sbjct: 126 IAACLSKDADIYLLDEPSAYLD 147
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 50.5 bits (122), Expect = 6e-06
Identities = 58/223 (26%), Positives = 95/223 (42%), Gaps = 71/223 (31%)
Query: 1264 VLRGISCTF-PGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLR 1322
+L+ IS +F PG K G++G G+GKSTL+ RI + G+D G
Sbjct: 22 ILKDISLSFFPG-AKIGVLGLNGAGKSTLL----RI---------MAGVDKEFEG----E 63
Query: 1323 TRLS------IIPQDPVMFEG-TVRSNV--------DPLEEYTDEQIWEAL-DKCQLGDE 1366
R + +PQ+P + TVR NV L+ + +I+ A + D
Sbjct: 64 ARPAPGIKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRF--NEIYAAYAEPDADFDA 121
Query: 1367 VRKKEGKL----------------------------DSKVTENGENWSMGQRQLVCLGRV 1398
+ ++G+L D+KVT S G+R+ V L R+
Sbjct: 122 LAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVT----KLSGGERRRVALCRL 177
Query: 1399 LLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAH 1441
LL++ +L+LDE T +D + ++Q L + TV+ + H
Sbjct: 178 LLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY--PGTVVAVTH 218
|
Length = 556 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 6e-06
Identities = 43/155 (27%), Positives = 66/155 (42%), Gaps = 15/155 (9%)
Query: 1280 IVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSIIPQDPVMFEGTV 1339
I G G+GK++L++ L + P AG++L G I + L + Q + E T
Sbjct: 32 IEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTA 91
Query: 1340 RSNVDPL----EEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCL 1395
N+ DE +WEAL + L G D V S GQ++ V L
Sbjct: 92 LENLRFYQRLHGPGDDEALWEALAQVGLA-------GFEDVPV----RQLSAGQQRRVAL 140
Query: 1396 GRVLLKRRKILMLDEATASVDTATDNLIQQSLRQH 1430
R+ L R + +LDE ++D ++ L QH
Sbjct: 141 ARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQH 175
|
Length = 204 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 6e-06
Identities = 43/188 (22%), Positives = 86/188 (45%), Gaps = 36/188 (19%)
Query: 628 DISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVA 687
+ HN L+++++ + + V V G GSGKS+L++ L SG +L +
Sbjct: 5 GANVHN--LQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLYA----SGKARLISFLPKFS 58
Query: 688 QSPWIQSGKIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQ 747
++ I +++ I G L L+ G + LSGG+
Sbjct: 59 RNKLIFIDQLQFLIDVG--------------------LGYLTLGQKLS------TLSGGE 92
Query: 748 KQRIQIARALYQDAD--IYLFDDPFSAVDAHTGSHLFKEVLLGLLNSK-TVLYVTHQVEF 804
QR+++A L+ + +++ D+P + + + L EV+ GL++ TV+ + H ++
Sbjct: 93 LQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLL-EVIKGLIDLGNTVILIEHNLDV 151
Query: 805 LPAADLVL 812
L +AD ++
Sbjct: 152 LSSADWII 159
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 7e-06
Identities = 56/216 (25%), Positives = 88/216 (40%), Gaps = 21/216 (9%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQS- 694
+ +I+L V + G G+GKS+LL I G + SG + G PW +
Sbjct: 16 VNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDG-------HPWTRKD 68
Query: 695 -----GKIEDNILFGKEMDRERYNAVLDACSLEKD--LEILSFGDQTVVGERGI-NLSGG 746
IE L+ RE L E+L+ D T G++ S G
Sbjct: 69 LHKIGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLG 128
Query: 747 QKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTH---QVE 803
KQR+ IA AL + + D+P + +D L + + TV+ +H +V+
Sbjct: 129 MKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQ 188
Query: 804 FLPAADLVLVIKDGKITQAGKYTDVINSGTDFMELV 839
L AD + +I +G + GK N F+E+V
Sbjct: 189 QL--ADHIGIISEGVLGYQGKINKSENLEKLFVEVV 222
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (117), Expect = 7e-06
Identities = 55/226 (24%), Positives = 101/226 (44%), Gaps = 32/226 (14%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKL---------------- 679
L DI+L+V G A+ G GSGKS+LL + G + G + +
Sbjct: 22 LFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81
Query: 680 ----CGTKAYVAQSPWIQSGKIEDNILFGKE---MDRERYNAVLDACSLEKDLEILSFGD 732
G +S + ++D + FG + + +E+ + + EK LE++ D
Sbjct: 82 VRKKVGVVFQFPESQLFEETVLKD-VAFGPQNFGIPKEKAEKI----AAEK-LEMVGLAD 135
Query: 733 QTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNS 792
+ + LSGGQ +R+ IA L + ++ + D+P + +D + + +
Sbjct: 136 E-FWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSG 194
Query: 793 KTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYTDVINSGTDFME 837
+TV+ VTH ++ + AD V +++ G I G +DV DF++
Sbjct: 195 QTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQE-VDFLK 239
|
Length = 288 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 7e-06
Identities = 55/214 (25%), Positives = 89/214 (41%), Gaps = 42/214 (19%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQ 693
LK I+ + G V G G+GK++ L + G + SG +++ G V PW +
Sbjct: 35 EALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAG---LV---PWKR 88
Query: 694 SGKIEDNI--LFGK---------------------EMDRERYNAVLDACSLEKDLEILSF 730
K I +FG+ ++ R+ LD S + L++
Sbjct: 89 RKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELS--ELLDLEEL 146
Query: 731 GDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL 790
D V R LS GQ+ R +IA AL + +I D+P +D ++ L
Sbjct: 147 LDTPV---R--QLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRN--FLKEY 199
Query: 791 NSK---TVLYVTHQVEFLPA-ADLVLVIKDGKIT 820
N + TVL +H ++ + A A VLVI G++
Sbjct: 200 NRERGTTVLLTSHYMKDIEALARRVLVIDKGRLL 233
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 7e-06
Identities = 65/244 (26%), Positives = 101/244 (41%), Gaps = 59/244 (24%)
Query: 632 HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVP--------KISGTLKLCGTK 683
H L+D++L++ G A+ G G+GKS+LL + G++ +++G + L G
Sbjct: 13 HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEP 72
Query: 684 AYVAQSPWI--------QSGK------IEDNILFGKEMDRERYNAVLDACSLE-KDLEIL 728
+P + Q+ + + +L G RY A +L +D EI
Sbjct: 73 LAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLG------RYPHARRAGALTHRDGEIA 126
Query: 729 S-----FGDQTVVGERGINLSGGQKQRIQIARALYQ---------DADIYLFDDPFSAVD 774
G +VG LSGG+ R+Q AR L Q L D+P +A+D
Sbjct: 127 WQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALD 186
Query: 775 -AH------TGSHLFKEVLLGLLNSKTVLYVTHQVEFLPA--ADLVLVIKDGKITQAGKY 825
AH T L ++ LG VL + H L A AD + ++ DG I G
Sbjct: 187 LAHQHRLLDTVRRLARDWNLG------VLAIVHDPN-LAARHADRIAMLADGAIVAHGAP 239
Query: 826 TDVI 829
DV+
Sbjct: 240 ADVL 243
|
Length = 272 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 8e-06
Identities = 61/257 (23%), Positives = 114/257 (44%), Gaps = 40/257 (15%)
Query: 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1307
I+ +++ + P VL I + I+G +GSGKSTL++ + ++ E +G ++
Sbjct: 2 IEFKNVSKHFGPTQ--VLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLI 59
Query: 1308 IDGIDI--SLIGLHDLR-------TRLSIIPQ----DPVMFEGTVRSNVDPLEEYTDEQI 1354
+DG+ + + +R + + P + VMF G +R EE ++Q
Sbjct: 60 VDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMF-GPLRVRGASKEE-AEKQA 117
Query: 1355 WEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATAS 1414
E L K L + +L S GQ+Q V + R L + K+++ DE T++
Sbjct: 118 RELLAKVGLAERAHHYPSEL-----------SGGQQQRVAIARALAVKPKLMLFDEPTSA 166
Query: 1415 VDTATDNLIQQSLR--QHFSD--CTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKL 1469
+D L + L+ Q ++ T++ + H I + ++ + G I E P+ L
Sbjct: 167 LDP---ELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVL 223
Query: 1470 LENKSS----SFSQLVA 1482
++N S F Q V+
Sbjct: 224 IKNPPSQRLQEFLQHVS 240
|
Length = 240 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 9e-06
Identities = 55/210 (26%), Positives = 93/210 (44%), Gaps = 24/210 (11%)
Query: 633 NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK--------- 683
L ++L++ G V V G+ G+GKS+LL+ I G++ SG + + G
Sbjct: 19 KRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKR 78
Query: 684 ----AYVAQSPWIQSG---KIEDNILFGKEMDRER-----YNAVLDACSLEKDLEILSFG 731
A V Q P + IE+N+ + ++R N + S + L L G
Sbjct: 79 ANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRS-SFRERLARLGLG 137
Query: 732 DQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLN 791
+ + +R LSGGQ+Q + + A I L D+ +A+D T + + +
Sbjct: 138 LENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEE 197
Query: 792 SK-TVLYVTHQVE-FLPAADLVLVIKDGKI 819
K T L VTH +E L + ++++ GKI
Sbjct: 198 HKLTTLMVTHNMEDALDYGNRLIMLHSGKI 227
|
Length = 263 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 1e-05
Identities = 52/193 (26%), Positives = 98/193 (50%), Gaps = 31/193 (16%)
Query: 1272 FPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRL--SIIP 1329
+PGE ++G G+GKSTL++ L I EP G I I+ I+ + + H L +L II
Sbjct: 29 YPGEIHA-LLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLD-HKLAAQLGIGIIY 86
Query: 1330 QD-PVMFEGTVRSNV------------DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDS 1376
Q+ V+ E TV N+ + ++ + ++ A+ ++G +V LD
Sbjct: 87 QELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKV-----DLDE 141
Query: 1377 KVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASV-DTATDNL--IQQSLRQHFSD 1433
KV N S+ +Q++ + + L+ K++++DE T+S+ + D L I LR+ +
Sbjct: 142 KV----ANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGT- 196
Query: 1434 CTVITIAHRITSV 1446
++ I+H++ +
Sbjct: 197 -AIVYISHKLAEI 208
|
Length = 510 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 1e-05
Identities = 70/291 (24%), Positives = 124/291 (42%), Gaps = 39/291 (13%)
Query: 542 TFGTCIL-LKVPLESGKVLSAIATFRLLQILIYKLPAIISMTIQTKVSLQRIASFFCLDE 600
T+ +L L+ PL LSA+ P ++S +V+ ++ L
Sbjct: 267 TYSLTLLFLRTPL-----LSAVGAL----------PTLLS----AQVAFNKLNKL-ALAP 306
Query: 601 LQPDLVEKQPRGSSETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKS 660
+ + + +E+ + F++ + ++ INL + G + + G GSGKS
Sbjct: 307 YKAEF-PRPQAFPDWQTLELRNVTFAYQDNGF--SVGPINLTIKRGELLFLIGGNGSGKS 363
Query: 661 SLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQ-----SGKIEDNILFGKEMDRERYNAV 715
+L + G SG + L G V S D LF + + E A
Sbjct: 364 TLAMLLTGLYQPQSGEILLDGKP--VTAEQPEDYRKLFSAVFTDFHLFDQLLGPEGKPA- 420
Query: 716 LDACSLEKDLEILSFGDQ-TVVGER--GINLSGGQKQRIQIARALYQDADIYLFDDPFSA 772
+ +EK LE L + + R + LS GQK+R+ + AL ++ DI L D+ +
Sbjct: 421 -NPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAAD 479
Query: 773 VDAHTGSHLFKEVLLGLLNS--KTVLYVTHQVEFLPAADLVLVIKDGKITQ 821
D H F +VLL LL KT+ ++H + AD +L +++G++++
Sbjct: 480 QDPHF-RREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSE 529
|
Length = 547 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 1e-05
Identities = 40/171 (23%), Positives = 79/171 (46%), Gaps = 23/171 (13%)
Query: 1280 IVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSIIPQDPVMFEGTV 1339
I G G GKS+L + L + G++ + +L +PQ P M GT+
Sbjct: 483 ICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTL 531
Query: 1340 RSNV---DPLEE-----YTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQ 1391
R + D E+ +D+ + + LD QL + ++EG + V + + S G++Q
Sbjct: 532 RDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHIL-EREGGWSA-VQDWMDVLSGGEKQ 589
Query: 1392 LVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHR 1442
+ + R+ + + +LDE T++V + + + R+ T+ +++HR
Sbjct: 590 RIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREF--GITLFSVSHR 638
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 1e-05
Identities = 43/171 (25%), Positives = 69/171 (40%), Gaps = 39/171 (22%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGE---------VPKISGTLKLCG--- 681
P L++++L V G V + G GSGKS+LL + V + L
Sbjct: 25 PVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEP 84
Query: 682 ---------TKAYVAQ----SPWIQSGKIEDNILFGKEMDRE----RYNAVLDACSLEKD 724
T YV+Q P + + + L + + RE + +L +L +
Sbjct: 85 REVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPER 144
Query: 725 LEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDA 775
L L+ SGG++QR+ IAR D I L D+P +++DA
Sbjct: 145 LWSLAPA----------TFSGGEQQRVNIARGFIVDYPILLLDEPTASLDA 185
|
Length = 235 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 47.9 bits (115), Expect = 1e-05
Identities = 45/180 (25%), Positives = 77/180 (42%), Gaps = 30/180 (16%)
Query: 1280 IVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSIIP--QDPVMFEG 1337
I+G G+GK+T++ + P G +L G D++ + H + R I Q P +FE
Sbjct: 33 IIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQI-ARAGIGRKFQKPTVFEN 91
Query: 1338 -TVRSNVD---------------PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTEN 1381
TV N++ L ++I E L+ L DE + G L
Sbjct: 92 LTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLL------- 144
Query: 1382 GENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAH 1441
S GQ+Q + +G +L++ K+L+LDE A + + L+ +V+ + H
Sbjct: 145 ----SHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEH 200
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 2e-05
Identities = 64/238 (26%), Positives = 110/238 (46%), Gaps = 50/238 (21%)
Query: 1264 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRT 1323
V+ ++ T ++G +G GK+T+++ + + +P GQI IDG D+ T
Sbjct: 21 VIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDV---------T 71
Query: 1324 RLSIIPQDPVM-FEG-------TVRSNVD--------PLEEYTDEQIWEALDKCQLGDEV 1367
SI +D M F+ ++ NV P EE +++ EAL+ L
Sbjct: 72 HRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEE-RKQRVKEALELVDL---- 126
Query: 1368 RKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSL 1427
G D V + S GQ+Q V L R L+ + K+L+ DE +++D NL ++S+
Sbjct: 127 ---AGFEDRYV----DQISGGQQQRVALARALILKPKVLLFDEPLSNLDA---NL-RRSM 175
Query: 1428 R-------QHFSDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLENKSSSF 1477
R Q F + T + + H + SD V++++ G I + SP++L +S F
Sbjct: 176 REKIRELQQQF-NITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPASRF 232
|
Length = 351 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 2e-05
Identities = 51/205 (24%), Positives = 84/205 (40%), Gaps = 44/205 (21%)
Query: 1264 VLRGISCTF-PGEKKTGIVGRTGSGKSTLIQTL--FRIVEPAAGQILIDGIDISLIGLHD 1320
+L+G++ T GE ++G GSGKSTL +T+ E G+IL G DI+ + +
Sbjct: 15 ILKGVNLTIKKGEVHA-LMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEE 73
Query: 1321 LRTRLSII--PQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKV 1378
R RL I Q P G V+ D +R
Sbjct: 74 -RARLGIFLAFQYPPEIPG-VK----------------------NADFLR---------- 99
Query: 1379 TENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQ-HFSDCTVI 1437
E +S G+++ + ++LL + +LDE + +D L+ + + + +V+
Sbjct: 100 -YVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVL 158
Query: 1438 TIAH--RITSVIDSDMVLLLSHGLI 1460
I H R+ I D V +L G I
Sbjct: 159 IITHYQRLLDYIKPDRVHVLYDGRI 183
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 2e-05
Identities = 43/154 (27%), Positives = 73/154 (47%), Gaps = 12/154 (7%)
Query: 1279 GIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSIIPQ-DPVMFEG 1337
G++G G+GKST+ + L ++ P G+I + G + R + ++PQ D + E
Sbjct: 34 GLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVP-SRARLARVAIGVVPQFDNLDPEF 92
Query: 1338 TVRSNVDPLEEY---TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVC 1394
TVR N+ Y + +I + E + E K D +V S G ++ +
Sbjct: 93 TVRENLLVFGRYFGMSTREIEAVIPSLL---EFARLESKADVRVAL----LSGGMKRRLT 145
Query: 1395 LGRVLLKRRKILMLDEATASVDTATDNLIQQSLR 1428
L R L+ ++L+LDE T +D +LI + LR
Sbjct: 146 LARALINDPQLLILDEPTTGLDPHARHLIWERLR 179
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 2e-05
Identities = 57/215 (26%), Positives = 93/215 (43%), Gaps = 44/215 (20%)
Query: 639 INLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSP--WIQSG- 695
I+ V G V + G VG+G+S L+ + G + +G + L G K +SP I++G
Sbjct: 272 ISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDG-KPIDIRSPRDAIRAGI 330
Query: 696 ----------------KIEDNI---------LFGKEMD--RERYNAVLDACSLEKDLEIL 728
+ DNI G ++ E NA D I
Sbjct: 331 MLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENA---------DRFIR 381
Query: 729 SFGDQTVVGERGI-NLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLL 787
S +T E+ I NLSGG +Q+ + R L +D + L D+P +D ++ V+
Sbjct: 382 SLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIY-NVIY 440
Query: 788 GLLNSK-TVLYVTHQV-EFLPAADLVLVIKDGKIT 820
L VL+V+ + E L AD ++V+++G+I
Sbjct: 441 ELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIA 475
|
Length = 501 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 2e-05
Identities = 55/215 (25%), Positives = 95/215 (44%), Gaps = 50/215 (23%)
Query: 1261 MPFV-LRGISCTFPGEKKT-------------GIVGRTGSGKSTLIQTLFRIVEPAAGQI 1306
P++ GI TFPG K ++G G+GKSTL++ L +P AG I
Sbjct: 2 SPYLSFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSI 61
Query: 1307 LIDGIDISLIGLHD-LRTRLSIIPQD----PVMFEGTVRSNVDPLEEYTDEQIWEA---- 1357
LIDG ++ L ++II Q+ P M TV N ++
Sbjct: 62 LIDGQEMRFASTTAALAAGVAIIYQELHLVPEM---TVAEN-----------LYLGQLPH 107
Query: 1358 ----LDKCQLGDEVRKKEGKLDSKVTENG--ENWSMGQRQLVCLGRVLLKRRKILMLDEA 1411
+++ L E R++ L + + + S+GQRQ+V + + L + +++ DE
Sbjct: 108 KGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEP 167
Query: 1412 TASVDT-ATDNL--IQQSLRQHFSDCTVIT-IAHR 1442
T+S+ + L + + LR ++ VI ++HR
Sbjct: 168 TSSLSAREIEQLFRVIRELR---AEGRVILYVSHR 199
|
Length = 501 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 49.0 bits (118), Expect = 2e-05
Identities = 54/215 (25%), Positives = 86/215 (40%), Gaps = 59/215 (27%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLC-GTK-AYVAQSPWIQ 693
LKDI+L F G ++ V G G+GKS+LL + G + G + G K Y+ Q P +
Sbjct: 23 LKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLD 82
Query: 694 SGK-----IED---------------NILFGKEMD--------RERYNAVLDACS---LE 722
K +E+ + + + ++DA L+
Sbjct: 83 PEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLD 142
Query: 723 KDLEI------LSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAH 776
LEI D V LSGG+++R+ + R L + D+ L D+P + +DA
Sbjct: 143 SQLEIAMDALRCPPWDAKVT-----KLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAE 197
Query: 777 TGS----HL--FKEVLLGLLNSKTVLYVTHQVEFL 805
+ + L + G TV+ VTH FL
Sbjct: 198 SVAWLEQFLHDYP----G-----TVVAVTHDRYFL 223
|
Length = 556 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 2e-05
Identities = 44/177 (24%), Positives = 75/177 (42%), Gaps = 38/177 (21%)
Query: 1264 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILI--DGIDISLIGLH-- 1319
VLR +S + + + G +GSGKSTL+++L+ P GQIL+ +G + L+
Sbjct: 26 VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPR 85
Query: 1320 ---DLRTR--------LSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVR 1368
++R L +IP+ + D + E + + R
Sbjct: 86 EVLEVRRTTIGYVSQFLRVIPRVSAL---------DVVAEPLLARGVPR-------EVAR 129
Query: 1369 KKEGKLDSKVTENGENWSM-------GQRQLVCLGRVLLKRRKILMLDEATASVDTA 1418
K L +++ WS+ G++Q V + R + IL+LDE TAS+D
Sbjct: 130 AKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDAT 186
|
Length = 235 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 2e-05
Identities = 45/135 (33%), Positives = 63/135 (46%), Gaps = 23/135 (17%)
Query: 685 YVAQSPWIQSGKIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGI-NL 743
YV P + GK+ + L K +R + + V++ LE L+ R I L
Sbjct: 168 YVDLIPKVFKGKVRE--LLKKVDERGKLDEVVERLGLENILD------------RDISEL 213
Query: 744 SGGQKQRIQIARALYQDADIYLFDDPFSAVDAH---TGSHLFKEVLLGLLNSKTVLYVTH 800
SGG+ QR+ IA AL +DAD Y FD+P S +D + L +E L K VL V H
Sbjct: 214 SGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRE----LAEGKYVLVVEH 269
Query: 801 QVEFLPA-ADLVLVI 814
+ L AD V +
Sbjct: 270 DLAVLDYLADNVHIA 284
|
Length = 590 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 3e-05
Identities = 60/250 (24%), Positives = 103/250 (41%), Gaps = 43/250 (17%)
Query: 1264 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDL-- 1321
VL+GIS + IVG +GSGKSTL+ L + +P +G + G D++ + L
Sbjct: 23 VLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQ 82
Query: 1322 --RTRLSIIPQD-PVMFEGTVRSNVDPLEEYTD-------EQIWEALDKCQLGDEVRKKE 1371
R I Q ++ T NV+ Y + E L + L D V +
Sbjct: 83 LRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQP 142
Query: 1372 GKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQ-- 1429
+L S GQ+Q V + R L+ ++++ DE T ++D+ + + L Q
Sbjct: 143 SQL-----------SGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLR 191
Query: 1430 ---HFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKL----------LENKSSS 1476
H TVI + H ++ V+ + G I + P + + N +S
Sbjct: 192 DRGH----TVIIVTHDPQVAAQAERVIEIRDGEIVR-NPPAQEKVNVAGGTEPVVNTASG 246
Query: 1477 FSQLVAEYTQ 1486
+ Q V+ + +
Sbjct: 247 WRQFVSGFRE 256
|
Length = 648 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 3e-05
Identities = 54/201 (26%), Positives = 88/201 (43%), Gaps = 68/201 (33%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK---AYVAQSPWI 692
+KD + +V G ++A+ G G GK++LL +LG++ SG + CGTK AY Q
Sbjct: 335 VKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIH-CGTKLEVAYFDQ---- 389
Query: 693 QSGKIEDNILFGKEMDRERYNAVLDACSLEKD-LEILSFGDQTVVGERGIN--------- 742
+ A LD EK ++ L+ G Q V+ +N
Sbjct: 390 -------------------HRAELD---PEKTVMDNLAEGKQEVM----VNGRPRHVLGY 423
Query: 743 -----------------LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEV 785
LSGG++ R+ +AR + +++ + D+P + +D T E+
Sbjct: 424 LQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVET-----LEL 478
Query: 786 LLGLLNS--KTVLYVTHQVEF 804
L LL+S TVL V+H +F
Sbjct: 479 LEELLDSYQGTVLLVSHDRQF 499
|
Length = 635 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 3e-05
Identities = 46/167 (27%), Positives = 76/167 (45%), Gaps = 31/167 (18%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQ 693
P + D++ + G + V G +G+G++ L+ + G +P+ SG + L G V +SP Q
Sbjct: 266 PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDG-HEVVTRSP--Q 322
Query: 694 SGKIEDNILFGKEMDRERYNAVL------------------DACSLEKDLEILSFGD--- 732
G + + I++ E DR+R VL SL+ E + D
Sbjct: 323 DG-LANGIVYISE-DRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIR 380
Query: 733 ----QTVVGERGI-NLSGGQKQRIQIARALYQDADIYLFDDPFSAVD 774
+T E+ I LSGG +Q++ IAR L + + D+P VD
Sbjct: 381 LFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVD 427
|
Length = 501 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 3e-05
Identities = 56/238 (23%), Positives = 94/238 (39%), Gaps = 29/238 (12%)
Query: 1268 ISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGID-----------ISLI 1316
IS P + G +G G+GKST ++ L ++ P +G++ ++G D I L+
Sbjct: 43 ISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLV 102
Query: 1317 GLHDLRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDS 1376
L+ + D + + D + + E LD L ++ KL
Sbjct: 103 MGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILD---LEGFLKWPVRKL-- 157
Query: 1377 KVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFS--DC 1434
S+GQR L LL K+L LDE T +D I++ L+++
Sbjct: 158 ---------SLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQA 208
Query: 1435 TVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLENKSSSFSQLVAEYTQRSSSS 1491
TV+ H + D VLL+ G + +D L+ + + + E Q S S
Sbjct: 209 TVLLTTHIFDDIATLCDRVLLIDQGQL-VFDGTLAQLQEQFGPYKEFSVELKQAKSLS 265
|
Length = 325 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 3e-05
Identities = 58/212 (27%), Positives = 88/212 (41%), Gaps = 41/212 (19%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK------------ 683
L + L V G +A+ G GSGKS+LL+ + G SG + L G
Sbjct: 26 LTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85
Query: 684 -----AYVAQS----PWIQS-GKIEDNILFGKEMD---RERYNAVLDACSLEKDLEILSF 730
+V QS P + + +E L E R A+L+ L K L+ L
Sbjct: 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLP- 144
Query: 731 GDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL 790
LSGG++QR+ +ARA D+ D+P +D TG + LL L
Sbjct: 145 ----------AQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIAD--LLFSL 192
Query: 791 N---SKTVLYVTHQVEFLPAADLVLVIKDGKI 819
N T++ VTH ++ D L + +G++
Sbjct: 193 NREHGTTLILVTHDLQLAARCDRRLRLVNGQL 224
|
Length = 228 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (111), Expect = 4e-05
Identities = 59/247 (23%), Positives = 100/247 (40%), Gaps = 51/247 (20%)
Query: 628 DISSHNPTLKDINLKV-FHGMRV--------------AVCGTVGSGKSSLLSCILGEVPK 672
D+ + P + +NL + F G V ++ G GSGK++ L + K
Sbjct: 14 DVDAAAPAMAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDK 73
Query: 673 ISG-------------------TLKLCGTKAYVAQSPWIQSGKIEDNILFG----KEMDR 709
+SG L+ + Q P I DN+L G K + R
Sbjct: 74 VSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPR 133
Query: 710 ERYNAVLDACSLEKDLEILSFGDQTVVGER----GINLSGGQKQRIQIARALYQDADIYL 765
+ + V A + G V +R LSGGQ+Q + +AR L + ++ L
Sbjct: 134 KEFRGVAQA-------RLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLL 186
Query: 766 FDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQV-EFLPAADLVLVIKDGKITQAGK 824
D+P SA+D T + +E + L + TV+ VTH + + +D + DG++ + G
Sbjct: 187 LDEPTSALDPTTTEKI-EEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGP 245
Query: 825 YTDVINS 831
+ +S
Sbjct: 246 TEQLFSS 252
|
Length = 276 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 4e-05
Identities = 57/237 (24%), Positives = 103/237 (43%), Gaps = 34/237 (14%)
Query: 1250 LRDLQVRYAPHMPFV--LRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQI- 1306
+ +L + + + +R +S + + IVG +GSGKS L R++E A G +
Sbjct: 15 VENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQ 74
Query: 1307 ------------LIDGIDISLIGLHDLR-TRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQ 1353
+I+ + S + +R +++I Q+P+ T + V + E E
Sbjct: 75 CDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPM----TSLNPVFTVGEQIAES 130
Query: 1354 IW--------EALDKCQ-LGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRK 1404
I EA+ + + + D+VR E + + ++ S G RQ V + L R
Sbjct: 131 IRLHQGASREEAMVEAKRMLDQVRIPEAQ--TILSRYPHQLSGGMRQRVMIAMALSCRPA 188
Query: 1405 ILMLDEATASVDTATDNLIQQSLR--QHFSDCTVITIAHRITSVID-SDMVLLLSHG 1458
+L+ DE T ++D I Q ++ Q VI I H + V + +D VL++ G
Sbjct: 189 VLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQG 245
|
Length = 623 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 4e-05
Identities = 59/232 (25%), Positives = 104/232 (44%), Gaps = 40/232 (17%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK---------- 683
L D+NL + G A G GSGKS+++ + G G++++ T
Sbjct: 21 RALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDI 80
Query: 684 -------AYVAQSPWIQSGKIEDNIL----FGKE---MDRERYNAVLDACSLEKDLEILS 729
V Q P +S E+ +L FG + + +E +A +L ++ L
Sbjct: 81 KQIRKKVGLVFQFP--ESQLFEETVLKDVAFGPQNFGVSQE------EAEALAREKLALV 132
Query: 730 FGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHL---FKEVL 786
+++ + LSGGQ +R+ IA L + I + D+P + +D L FK++
Sbjct: 133 GISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKL- 191
Query: 787 LGLLNSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYTDVINSGTDFME 837
+ T++ VTH ++ + AD V V++ GK+ +GK D+ DF+E
Sbjct: 192 --HQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQD-VDFLE 240
|
Length = 280 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 4e-05
Identities = 51/194 (26%), Positives = 87/194 (44%), Gaps = 7/194 (3%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQ 693
L+++NL++ G VAV G G+GK++LL ILG K G K V
Sbjct: 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQ-KGRGEEKYRPDSGKVEVPKNTV 455
Query: 694 SGKI--EDNILFGKEMDRERYNAVL-DACSLEKDLEILSFGDQTVVGERGINLSGGQKQR 750
S I E FG+ E + D + + L D + + LS GQK+R
Sbjct: 456 SALIPGEYEPEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKER 515
Query: 751 IQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVL-LGLLNSKTVLYVTHQVEFLPA-- 807
++A+ L + ++ L D+ + +D T + +++ L T++ VTH+ E A
Sbjct: 516 AKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALR 575
Query: 808 ADLVLVIKDGKITQ 821
D ++++ GK+
Sbjct: 576 PDTLILVGYGKVPV 589
|
Length = 593 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 4e-05
Identities = 65/231 (28%), Positives = 96/231 (41%), Gaps = 47/231 (20%)
Query: 1279 GIVGRTGSGKSTLIQTLFRIVEPAA------GQILIDGIDISLIGLHDL-RTR---LSII 1328
GIVG +GSGKS QT F ++ A G +G +I + +L + R +S+I
Sbjct: 46 GIVGESGSGKS---QTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMI 102
Query: 1329 PQDPVMFEGTVRSNVDPLEEY--TDEQIWEALDKCQLGDEVRKKEGKLDS-------KVT 1379
QDP+ L Y EQ+ E L L + K E +S K+
Sbjct: 103 FQDPMT----------SLNPYMRVGEQLMEVL---MLHKGMSKAEAFEESVRMLDAVKMP 149
Query: 1380 ENGENWSM-------GQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQ---SLRQ 1429
E + M G RQ V + LL R K+L+ DE T ++D I L++
Sbjct: 150 EARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKR 209
Query: 1430 HFSDCTVITIAHRITSVIDS-DMVLLLSHGLIEEYDSPRKLLENKSSSFSQ 1479
F + +I I H + V D VL++ G EY + R + S +S
Sbjct: 210 EF-NTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARDVFYQPSHPYSI 259
|
Length = 330 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 5e-05
Identities = 76/329 (23%), Positives = 126/329 (38%), Gaps = 81/329 (24%)
Query: 567 LLQILI--YKLPAIISMTIQTKVSLQRIASFFCLDELQPDLVEKQPRGSSE---TAIEIA 621
LL +LI + L I+ + SL+ S + + +P LVE G I+
Sbjct: 328 LLGVLISMFMLTIILPNITEYMKSLEATNSLYEIINRKP-LVENNDDGKKLKDIKKIQFK 386
Query: 622 DGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCIL-------GEV-PKI 673
+ F +D KD+N + G A G G GKS++L I G++
Sbjct: 387 NVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIIND 446
Query: 674 SGTLKLCGTKAY------VAQSPWIQSGKIEDNILFG----------------------- 704
S LK K + V+Q P + S I++NI +
Sbjct: 447 SHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQE 506
Query: 705 --------------------KEMD-------RERYNAVLDA--CSLEKDLEILSFGD--- 732
D R+ Y + D+ + K + I F
Sbjct: 507 NKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALP 566
Query: 733 ---QTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEV--LL 787
+T+VG LSGGQKQRI IARA+ ++ I + D+ S++D + + K + L
Sbjct: 567 DKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLK 626
Query: 788 GLLNSKTVLYVTHQVEFLPAADLVLVIKD 816
G N T++ + H++ + A+ + V+ +
Sbjct: 627 GNENRITII-IAHRLSTIRYANTIFVLSN 654
|
Length = 1466 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 5e-05
Identities = 19/31 (61%), Positives = 24/31 (77%)
Query: 744 SGGQKQRIQIARALYQDADIYLFDDPFSAVD 774
SGGQ+QRI IARAL D D+ + D+P SA+D
Sbjct: 156 SGGQRQRIAIARALMLDPDVVVADEPVSALD 186
|
Length = 327 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 6e-05
Identities = 47/197 (23%), Positives = 91/197 (46%), Gaps = 24/197 (12%)
Query: 1279 GIVGRTGSGKSTLIQTLFRIVEPA-AGQILIDGIDISLIGLHD-LRTRLSIIPQD----- 1331
G+ G G+G++ L+Q LF G + I+G + + +R ++++P+D
Sbjct: 290 GVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHG 349
Query: 1332 --PVMFEGTVRSNV--DPLEEYTDE-QIWEALDKCQLGDEVRKKEGKLDSKVTENGENWS 1386
P++ V N+ L+ + + +I A + +G +++ + K S G S
Sbjct: 350 IVPIL---GVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIG-RLS 405
Query: 1387 MGQRQLVCLGRVLLKRRKILMLDEATASVDTATD----NLIQQSLRQHFSDCTVITIAHR 1442
G +Q L ++LL ++L+LDE T VD LI Q ++ + +I ++
Sbjct: 406 GGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVA---IIVVSSE 462
Query: 1443 ITSVID-SDMVLLLSHG 1458
+ V+ SD VL++ G
Sbjct: 463 LAEVLGLSDRVLVIGEG 479
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 7e-05
Identities = 29/85 (34%), Positives = 50/85 (58%), Gaps = 6/85 (7%)
Query: 743 LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSK---TVLYVT 799
LSGGQ+QR+ IA AL + D+ + D+P +A+D + + LL L ++ +L++T
Sbjct: 158 LSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILD--LLKELQAELGMAILFIT 215
Query: 800 HQVEFLPA-ADLVLVIKDGKITQAG 823
H + + AD V V++ G+I + G
Sbjct: 216 HDLGIVRKFADRVYVMQHGEIVETG 240
|
Length = 534 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 9e-05
Identities = 54/226 (23%), Positives = 102/226 (45%), Gaps = 48/226 (21%)
Query: 1265 LRGISCTFPGEKKT-------------GIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGI 1311
+ IS +FPG K ++G G+GKSTL++ LF I + +G IL G
Sbjct: 1 MSNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGK 60
Query: 1312 DISL-IGLHDLRTRLSIIPQD-PVMFEGTVRSN------------VDPLEEYTD-EQIWE 1356
+I L +S++ Q+ ++ + +V N VD + Y D + I++
Sbjct: 61 EIDFKSSKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFD 120
Query: 1357 ALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASV- 1415
LD + + R K L S+ Q Q++ + + KI+++DE T+S+
Sbjct: 121 ELD---IDIDPRAKVATL-----------SVSQMQMIEIAKAFSYNAKIVIMDEPTSSLT 166
Query: 1416 DTATDNL--IQQSLRQHFSDCTVITIAHRITSVID-SDMVLLLSHG 1458
+ ++L I + L++ C ++ I+H++ + D + +L G
Sbjct: 167 EKEVNHLFTIIRKLKE--RGCGIVYISHKMEEIFQLCDEITILRDG 210
|
Length = 491 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 9e-05
Identities = 41/145 (28%), Positives = 70/145 (48%), Gaps = 20/145 (13%)
Query: 1273 PGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQI-LIDGIDISLIGLHDLRTRLSIIPQD 1331
PG + G++GR G+GKSTLI+ L + P +G+I L GI + H L
Sbjct: 337 PGSR-IGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLE--------- 386
Query: 1332 PVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQ 1391
+R++ PL+ ++ + +L D + + D KVTE +S G++
Sbjct: 387 ------FLRADESPLQHLA--RLAPQELEQKLRDYLGGFGFQGD-KVTEETRRFSGGEKA 437
Query: 1392 LVCLGRVLLKRRKILMLDEATASVD 1416
+ L ++ +R +L+LDE T +D
Sbjct: 438 RLVLALIVWQRPNLLLLDEPTNHLD 462
|
Length = 638 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 1e-04
Identities = 36/171 (21%), Positives = 61/171 (35%), Gaps = 33/171 (19%)
Query: 1279 GIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHD-----------LRTRLSI 1327
GI G G+G++ L + LF ++G+IL+DG + + D R +
Sbjct: 289 GIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGL 348
Query: 1328 IPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSM 1387
+ + N+ L +D+ + + +L K S
Sbjct: 349 VLDMS------IAENIT-LASLRRFSRRGLIDRRKERALAERYIRRLRIKTP------SP 395
Query: 1388 GQR---------QLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQ 1429
Q Q V L R L K+L+LDE T +D I + +R+
Sbjct: 396 EQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRE 446
|
Length = 500 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 1e-04
Identities = 17/33 (51%), Positives = 25/33 (75%)
Query: 742 NLSGGQKQRIQIARALYQDADIYLFDDPFSAVD 774
LSGG+ QR+ IA AL ++AD+YL D+P + +D
Sbjct: 455 ELSGGELQRVAIAAALSREADLYLLDEPSAYLD 487
|
Length = 591 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 1e-04
Identities = 46/215 (21%), Positives = 93/215 (43%), Gaps = 36/215 (16%)
Query: 1264 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRT 1323
L+GIS T + G +G G+GK+T ++ L +++P +G ++ + GL +
Sbjct: 36 ALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSG-------EVRVAGLVPWKR 88
Query: 1324 RLSIIPQDPVMF--EGTVRSNVDPLEEYT---------DEQIWEALDKC----QLGDEVR 1368
R + + V+F + + ++ ++ + + + LD+ L +
Sbjct: 89 RKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEEL-- 146
Query: 1369 KKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLR 1428
LD+ V S+GQR + LL +IL LDE T +D I+ L+
Sbjct: 147 -----LDTPV----RQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLK 197
Query: 1429 QHFSD--CTVITIAHRITSVID-SDMVLLLSHGLI 1460
++ + TV+ +H + + + VL++ G +
Sbjct: 198 EYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRL 232
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (111), Expect = 1e-04
Identities = 18/31 (58%), Positives = 24/31 (77%), Gaps = 1/31 (3%)
Query: 742 NLSGGQKQRIQIARALYQDADIYLFDDPFSA 772
+LSGG+ QR+ IA L +DAD+YL D+P SA
Sbjct: 453 DLSGGELQRVAIAACLSRDADLYLLDEP-SA 482
|
Length = 590 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 2e-04
Identities = 54/242 (22%), Positives = 94/242 (38%), Gaps = 42/242 (17%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQ 693
++DI+ ++ G V G G+GKS+ L + G + SG +++ G + P+ +
Sbjct: 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNG------KDPFRR 91
Query: 694 SGKIEDNI--LFGKEMDRERYNAVLDACSLEKDL----------------EILSFGDQTV 735
+ +I + G+++ LD+ + K + EIL
Sbjct: 92 REEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLK 151
Query: 736 VGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL---NS 792
R LS GQ+ R ++A AL + D+P +D + + + L N
Sbjct: 152 WPVR--KLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNA-----QANIREFLKEYNE 204
Query: 793 K---TVLYVTH---QVEFLPAADLVLVIKDGKITQAGKYTDVINSGTDFMELVDAHKQAL 846
+ TVL TH + L D VL+I G++ G + + E KQA
Sbjct: 205 ERQATVLLTTHIFDDIATLC--DRVLLIDQGQLVFDGTLAQLQEQFGPYKEFSVELKQAK 262
Query: 847 ST 848
S
Sbjct: 263 SL 264
|
Length = 325 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 2e-04
Identities = 55/244 (22%), Positives = 103/244 (42%), Gaps = 42/244 (17%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------- 682
L ++ +V G + + G G+GKS+LL+ + G SG+++ G
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG-SGSIQFAGQPLEAWSATELARH 73
Query: 683 KAYVAQSPWIQSGKIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGIN 742
+AY++Q + L + D+ R + D L+ D+ R N
Sbjct: 74 RAYLSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGA------LALDDKL---GRSTN 124
Query: 743 -LSGGQKQRIQIARALYQ-------DADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNS-K 793
LSGG+ QR+++A + Q + L D+P +++D S L + +L L
Sbjct: 125 QLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDR-LLSALCQQGL 183
Query: 794 TVLYVTHQVEF-LPAADLVLVIKDGKITQAGKYTDVINS-------GTDFMEL-VDAHKQ 844
++ +H + L A ++K GK+ +G+ +V+ G +F L ++ H
Sbjct: 184 AIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTPPVLAQAYGMNFRRLDIEGHPM 243
Query: 845 ALST 848
+ST
Sbjct: 244 LIST 247
|
Length = 248 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 2e-04
Identities = 56/213 (26%), Positives = 94/213 (44%), Gaps = 28/213 (13%)
Query: 618 IEIADGNFSWDISSHNPTL-KDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGT 676
I +D +F + P L K++N + R+A+ G G GKS++L I GE+ SGT
Sbjct: 509 ISFSDASFGY---PGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGT 565
Query: 677 LKLCGTKAYVAQSPWIQSGKIEDNILFGKEMDRER--YNAVLDACSLEKDLE--ILSFGD 732
V +S ++ + + G ++ Y E+ L + SFG
Sbjct: 566 ---------VFRSAKVRMAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFG- 615
Query: 733 QTVVGERGIN----LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLG 788
V G + LSGGQK R+ A+ ++ I L D+P + +D L + +
Sbjct: 616 --VTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGL--- 670
Query: 789 LLNSKTVLYVTHQVEFLPAA-DLVLVIKDGKIT 820
+L VL V+H + + D + V+ +GK+T
Sbjct: 671 VLFQGGVLMVSHDEHLISGSVDELWVVSEGKVT 703
|
Length = 718 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 3e-04
Identities = 22/54 (40%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
Query: 1246 GKIDLRDLQVRYA--PHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFR 1297
GKI++ D+ RY P++P + + ++ + +K T IVG TGSGKST++ L R
Sbjct: 1164 GKIEIMDVNFRYISRPNVP-IYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMR 1216
|
Length = 1466 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 3e-04
Identities = 49/161 (30%), Positives = 70/161 (43%), Gaps = 39/161 (24%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK--AYVAQSP--- 690
+ D++ K+ G V V G G+GKS+L I G+ SGT+K+ T AYV QS
Sbjct: 338 IDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSRDAL 397
Query: 691 ------W--IQSGKIEDNILFGK-EMDRERYNAVLDACSLEKDLEILSF----GDQT-VV 736
W I G D I GK E+ Y F DQ V
Sbjct: 398 DPNKTVWEEISGG--LDIIQLGKREVPSRAY------VG--------RFNFKGSDQQKKV 441
Query: 737 GERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHT 777
G+ LSGG++ R+ +A+ L ++ L D+P + +D T
Sbjct: 442 GQ----LSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVET 478
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 3e-04
Identities = 64/242 (26%), Positives = 105/242 (43%), Gaps = 69/242 (28%)
Query: 632 HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKA------- 684
+N LK+I++ + G+ V G GSGKSSL++ L P ++ L L +
Sbjct: 9 NN--LKNIDVDIPLGVLTCVTGVSGSGKSSLINDTL--YPALARRLHLKKEQPGNHDRIE 64
Query: 685 ---------YVAQSPWIQS--------GKIEDNI--LF-----GKEMDRE----RYNA-- 714
+ QSP ++ + D I LF GK +RE RY
Sbjct: 65 GLEHIDKVIVIDQSPIGRTPRSNPATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKS 124
Query: 715 ---VLDACSLEKDLEILSFGD--------QTVV---------GERGINLSGGQKQRIQIA 754
VLD ++E+ LE F + QT+ G+ LSGG+ QRI++A
Sbjct: 125 IADVLDM-TVEEALEF--FENIPKIARKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLA 181
Query: 755 RALYQDAD---IYLFDDPFSAVDAHTGSHLFKEVLLGLL-NSKTVLYVTHQVEFLPAADL 810
+ L + + +Y+ D+P + + H L EVL L+ TV+ + H ++ + AD
Sbjct: 182 KELSKRSTGKTLYILDEPTTGLHFHDVKKLL-EVLQRLVDKGNTVVVIEHNLDVIKCADW 240
Query: 811 VL 812
++
Sbjct: 241 II 242
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 261 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 4e-04
Identities = 50/199 (25%), Positives = 85/199 (42%), Gaps = 20/199 (10%)
Query: 1264 VLRGISCTF-PGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLR 1322
L I+ T GE ++G +G GK+TL+ + V G I +DG + G
Sbjct: 16 ALEDINLTLESGELLV-VLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAE--- 71
Query: 1323 TRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTEN 1381
R + + ++ V+ NV L+ ++K Q + + K+ + E
Sbjct: 72 -RGVVFQNEGLLPWRNVQDNVAFGLQ-------LAGVEKMQRLEIAHQMLKKVGLEGAEK 123
Query: 1382 GENW--SMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQ--HFSDCTVI 1437
W S GQRQ V + R L ++L+LDE ++D T +Q L + + V+
Sbjct: 124 RYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVL 183
Query: 1438 TIAHRITSVI--DSDMVLL 1454
I H I + +++VLL
Sbjct: 184 LITHDIEEAVFMATELVLL 202
|
Length = 255 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 4e-04
Identities = 54/213 (25%), Positives = 89/213 (41%), Gaps = 41/213 (19%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK------------ 683
L +I+ ++ G VA+ G GSGKS+L+ + SGT+ + G
Sbjct: 23 LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKK 82
Query: 684 -----AYVAQSPWIQSGKIEDNIL---------FGKEMDRERYNAV--LDACSLEKDLEI 727
+ V Q P Q E+ +L FG D + A+ L L +DL
Sbjct: 83 LRKKVSLVFQFPEAQL--FENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDL-- 138
Query: 728 LSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLL 787
+ + LSGGQ +R+ IA + + +I D+P + +D + +
Sbjct: 139 --------ISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKD 190
Query: 788 GLLNSKTVLYVTHQVEFLPA-ADLVLVIKDGKI 819
TV+ VTH ++ + AD VLV++ GK+
Sbjct: 191 YQKAGHTVILVTHNMDDVAEYADDVLVLEHGKL 223
|
Length = 287 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 4e-04
Identities = 44/209 (21%), Positives = 90/209 (43%), Gaps = 33/209 (15%)
Query: 1264 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLI------- 1316
+ IS P + G++G G+GK+T + + ++EP G+I +G +S
Sbjct: 17 AVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGY 76
Query: 1317 -----GLHDLRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKE 1371
GL+ T +D + + ++ + E Q W L++ ++
Sbjct: 77 LPEERGLYPKMT-----VEDQLKYLAELK-GMPKAEIQKKLQAW--LERLEIV------- 121
Query: 1372 GKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQ-H 1430
GK K+ + S G +Q + ++ ++L+LDE + +D L++ ++ +
Sbjct: 122 GKKTKKI----KELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELK 177
Query: 1431 FSDCTVITIAHRITSVID-SDMVLLLSHG 1458
T+I +HR+ V + D +L+L G
Sbjct: 178 EEGATIIFSSHRMEHVEELCDRLLMLKKG 206
|
Length = 300 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 4e-04
Identities = 54/210 (25%), Positives = 92/210 (43%), Gaps = 33/210 (15%)
Query: 636 LKDINLKVFHG-MRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK------AYVA- 687
L D++L V G +RV + G G+GK++++ I G+ G++ GT +A
Sbjct: 18 LNDLSLYVDPGELRV-IIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIAR 76
Query: 688 -------QSPWI-QSGKIEDNILFGKEMDR--------ERYNAVLDACSLEKDLEILSFG 731
Q P + ++ + +N+ D+ D +E+ LE +
Sbjct: 77 AGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKD--RIEEVLETIGLA 134
Query: 732 DQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAV-DAHTGSHLFKEVLLGLL 790
D+ LS GQKQ ++I L QD + L D+P + + D T E+L L
Sbjct: 135 DE--ADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEET--EKTAELLKSLA 190
Query: 791 NSKTVLYVTHQVEFLPA-ADLVLVIKDGKI 819
+V+ V H +EF+ + AD V V+ G +
Sbjct: 191 GKHSVVVVEHDMEFVRSIADKVTVLHQGSV 220
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 4e-04
Identities = 45/205 (21%), Positives = 79/205 (38%), Gaps = 32/205 (15%)
Query: 1272 FPGEKKTG----IVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDL-RTRLS 1326
GE + G +VG G+GKSTL+ + + +G I G + +L R R
Sbjct: 18 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAY 76
Query: 1327 IIPQDPVMFEGTV---RSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGE 1383
+ Q F V + P + T E + + L D++ + +L
Sbjct: 77 LSQQQTPPFAMPVWHYLTLHQPDKTRT-ELLNDVAGALALDDKLGRSTNQL--------- 126
Query: 1384 NWSMGQRQLVCLGRVLLK-------RRKILMLDEATASVDTATDNLIQQSLRQHF--SDC 1434
S G+ Q V L V+L+ ++L+LDE S+D A + + + L
Sbjct: 127 --SGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLL-SALCQQGL 183
Query: 1435 TVITIAHRITSVI-DSDMVLLLSHG 1458
++ +H + + + LL G
Sbjct: 184 AIVMSSHDLNHTLRHAHRAWLLKRG 208
|
Length = 248 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 4e-04
Identities = 26/62 (41%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 744 SGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVE 803
SGG + RI +ARAL+ + D+ L D+P + +D H + L+ E L L KT + V+H E
Sbjct: 346 SGGWRMRIALARALFIEPDLLLLDEPTNHLDLH--AVLWLETYL-LKWPKTFIVVSHARE 402
Query: 804 FL 805
FL
Sbjct: 403 FL 404
|
Length = 718 |
| >gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 4e-04
Identities = 46/202 (22%), Positives = 88/202 (43%), Gaps = 32/202 (15%)
Query: 1264 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDI--------SL 1315
L +S TF T I G G GKS+L++ + I++P++G I +I +
Sbjct: 15 NLFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTY 74
Query: 1316 IGLHDLRTRLSIIPQDPVMFEGTVRSNVDPLEEYTD--EQIWEALDKCQLGDEVRKKEGK 1373
IG H+L +L E TV N+ E + E ++ A+ +L D + +K
Sbjct: 75 IG-HNLGLKL----------EMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKCYS 123
Query: 1374 LDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSD 1433
L S G +++V + R++ + + +LDE ++ +L+ + +
Sbjct: 124 LSS-----------GMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANS 172
Query: 1434 CTVITIAHRITSVIDSDMVLLL 1455
++ ++ + S I S +L L
Sbjct: 173 GGIVLLSSHLESSIKSAQILQL 194
|
Length = 195 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 5e-04
Identities = 51/225 (22%), Positives = 87/225 (38%), Gaps = 41/225 (18%)
Query: 627 WD-ISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAY 685
WD I+ H + D++ + G + V G VG+G++ L+ + G P +
Sbjct: 266 WDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPG------KFEGNVF 319
Query: 686 VAQSPWIQSGKIEDNILFGKEM---DRERYNAVLD-ACSLEKDLEIL-SFGDQTVVGE-- 738
+ P + I G M DR+R+ V L +L SF + +
Sbjct: 320 INGKP-VDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAA 378
Query: 739 ------RGIN---------------LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHT 777
I LSGG +Q+ +A+ L + + + D+P VD
Sbjct: 379 ELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGA 438
Query: 778 GSHLFKEVLLGLLNSKTVLYV---THQVEFLPAADLVLVIKDGKI 819
++K L+ L + V + + E L +D VLVI +GK+
Sbjct: 439 KYEIYK--LINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKL 481
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 5e-04
Identities = 47/247 (19%), Positives = 102/247 (41%), Gaps = 38/247 (15%)
Query: 1247 KIDLRDLQVRYAPHMPF---VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAA 1303
+I ++++ + +P L +S + I+G+TGSGK+T I+ L ++ P
Sbjct: 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDT 61
Query: 1304 GQI--------------LIDGIDISLI----------GLHDLRTRLSIIPQ--DPVMFEG 1337
G I + + L+ + ++R R+ ++ Q + +FE
Sbjct: 62 GTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQ 121
Query: 1338 TVRSNV--DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCL 1395
T+ ++ P+ ++ EA + + + G +S + + S GQ++ V L
Sbjct: 122 TIEKDIIFGPVSMGVSKE--EAK---KRAAKYIELVGLDESYLQRSPFELSGGQKRRVAL 176
Query: 1396 GRVLLKRRKILMLDEATASVDTA-TDNLIQQSLRQHFSDCTVITIAHRITSVID-SDMVL 1453
+L L+ DE TA +D +++ + T+I + H + +V++ + +
Sbjct: 177 AGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTI 236
Query: 1454 LLSHGLI 1460
G I
Sbjct: 237 FFKDGKI 243
|
Length = 305 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 5e-04
Identities = 56/223 (25%), Positives = 89/223 (39%), Gaps = 47/223 (21%)
Query: 630 SSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILG-EVP---KIS------GTLKL 679
H L +++L + G VA+ G G GKS+L ++G E P +S L
Sbjct: 22 HQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNR 81
Query: 680 CGTKAY------VAQSP-----------WIQSGKIEDNILFGKEMDRERYNAVLDACSLE 722
KA+ V Q I + + K R + +L A L
Sbjct: 82 AQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDL- 140
Query: 723 KDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLF 782
D +L +R LSGGQ QR+ +ARAL + + + D+ S +D + +
Sbjct: 141 -DDSVLD--------KRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVI 191
Query: 783 KEVLLGLLNSKT---VLYVTHQ---VEFLPAADLVLVIKDGKI 819
+ LL L + L++TH VE V+V+ +G+I
Sbjct: 192 R--LLKKLQQQFGTACLFITHDLRLVERF--CQRVMVMDNGQI 230
|
Length = 268 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 5e-04
Identities = 33/133 (24%), Positives = 68/133 (51%), Gaps = 7/133 (5%)
Query: 1280 IVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDIS-LIGLHDLRTRLSIIPQDPVMFEG- 1337
++G G+GK+TL+ TL +G+I+ DG DI+ +R ++I+P+ +F
Sbjct: 36 LIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRM 95
Query: 1338 TVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGR 1397
TV N+ + + ++ + V + +L + + S G++Q++ +GR
Sbjct: 96 TVEENLAMGGFFAERDQFQ-----ERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGR 150
Query: 1398 VLLKRRKILMLDE 1410
L+ + ++L+LDE
Sbjct: 151 ALMSQPRLLLLDE 163
|
Length = 237 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 6e-04
Identities = 49/200 (24%), Positives = 76/200 (38%), Gaps = 58/200 (29%)
Query: 618 IEIADGNFSWDISSHN-------PTLK---DINLKVFHGMRVAVCGTVGSGKSSLLSCIL 667
+E+AD +DI TLK + L+++ G + V G G GKS+ I+
Sbjct: 9 LEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAII 68
Query: 668 GEVPKISGTLKLCG---TKAYVAQ-------------------SPWIQSGKI--EDNILF 703
G V G + G + +P + G+I E +
Sbjct: 69 GLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTY 128
Query: 704 GKEMDR----ERYNAVLDACSLEKDLEILSFGDQTVVGERGIN-----LSGGQKQRIQIA 754
++ R +R A++ L +L IN SGGQ QRI IA
Sbjct: 129 HPKLSRQEVKDRVKAMMLKVGLLPNL---------------INRYPHEFSGGQCQRIGIA 173
Query: 755 RALYQDADIYLFDDPFSAVD 774
RAL + + + D+P SA+D
Sbjct: 174 RALILEPKLIICDEPVSALD 193
|
Length = 331 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 41.6 bits (97), Expect = 6e-04
Identities = 27/189 (14%), Positives = 54/189 (28%), Gaps = 58/189 (30%)
Query: 1276 KKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSIIPQDPVMF 1335
+ IVG GSGK+TL + L A ++ G + I
Sbjct: 3 EVILIVGPPGSGKTTLARAL-------ARELGPPGGGVIYI------------------- 36
Query: 1336 EGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCL 1395
+ + + E +Q+ + + + R L
Sbjct: 37 ------DGEDILEEVLDQLLLIIVGGKKASGSGELR-----------------LRLA--L 71
Query: 1396 GRVLLKRRKILMLDEATASVDTATDNLIQQSLR-------QHFSDCTVITIAHRITSVID 1448
+ +L+LDE T+ +D + L+ + + TVI + +
Sbjct: 72 ALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGP 131
Query: 1449 SDMVLLLSH 1457
+ +
Sbjct: 132 ALLRRRFDR 140
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 6e-04
Identities = 51/174 (29%), Positives = 75/174 (43%), Gaps = 50/174 (28%)
Query: 1280 IVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLR-TRLSIIPQDPVM-FEG 1337
+VGR G+GKSTL++ L G++L+D D +I DL RL QDP EG
Sbjct: 34 LVGRNGAGKSTLMKIL-------NGEVLLD--DGRIIYEQDLIVARL---QQDPPRNVEG 81
Query: 1338 TVRSNV--------DPLEEY--------TD---------EQIWEALDKC---QLGDEVRK 1369
TV V + L+ Y TD ++ E LD QL + + +
Sbjct: 82 TVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINE 141
Query: 1370 KEGKL----DSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTAT 1419
+L D+ ++ W R+ LGR L+ +L+LDE T +D T
Sbjct: 142 VLAQLGLDPDAALSSLSGGW---LRK-AALGRALVSNPDVLLLDEPTNHLDIET 191
|
Length = 635 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 6e-04
Identities = 56/209 (26%), Positives = 95/209 (45%), Gaps = 36/209 (17%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSP----- 690
L L V+ G +A+ G G+GKS+++ + G + +G++ G K P
Sbjct: 20 LSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLG-KEVTFNGPKSSQE 78
Query: 691 -----------WIQSGKIEDNILFGKEM-------DRERYNAVLDACSLEKDLEILSFGD 732
I I +NI G+E D ++ A D L L L F
Sbjct: 79 AGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADK--LLARLN-LRFSS 135
Query: 733 QTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAV-DAHTGSHLFKEVLLGLLN 791
+VGE LS G++Q ++IA+ L ++ + + D+P A+ D T S LF+ V+ L +
Sbjct: 136 DKLVGE----LSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETES-LFR-VIRELKS 189
Query: 792 SKT-VLYVTHQV-EFLPAADLVLVIKDGK 818
++Y++H++ E D V V +DG+
Sbjct: 190 QGRGIVYISHRLKEIFEICDDVTVFRDGQ 218
|
Length = 501 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 6e-04
Identities = 54/200 (27%), Positives = 98/200 (49%), Gaps = 26/200 (13%)
Query: 1265 LRGISCTFPGEKK-------------TGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGI 1311
L+GI FPG K +VG G+GKST+++ L I AG IL G
Sbjct: 7 LKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGK 66
Query: 1312 DISLIGLHDLRTR-LSIIPQD-PVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRK 1369
+++ G + + II Q+ ++ + T+ N+ E+ + + +D ++ E K
Sbjct: 67 EVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVN--RFGRIDWKKMYAEADK 124
Query: 1370 KEGKLD---SKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEAT-ASVDTATDNLIQ- 1424
+L+ S GE S+G++Q+V + +VL K++++DE T A DT T++L +
Sbjct: 125 LLARLNLRFSSDKLVGE-LSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRV 183
Query: 1425 -QSLRQHFSDCTVITIAHRI 1443
+ L+ ++ I+HR+
Sbjct: 184 IRELKSQ--GRGIVYISHRL 201
|
Length = 501 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 6e-04
Identities = 51/220 (23%), Positives = 82/220 (37%), Gaps = 38/220 (17%)
Query: 1280 IVGRTGSGKSTLIQTLFRI--VEPAAGQILIDGIDISLIGLHDL-RTRLSIIPQDPVMFE 1336
+VG G+GKSTL L R+ + P +G I G + +L R R + Q F
Sbjct: 27 LVGPNGAGKSTL---LARMAGLLPGSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFA 83
Query: 1337 GTV-----RSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQ 1391
V D + + LD K+ + S G+ Q
Sbjct: 84 MPVFQYLTLHQPDKTRTEAVASALNEV--AEA--------LGLDDKLGRSVNQLSGGEWQ 133
Query: 1392 LVCLGRVLLK-------RRKILMLDEATASVDTATDNLIQQSLRQHFSDC----TVITIA 1440
V L V+L+ ++L+LDE S+D A + + L + C V+ +
Sbjct: 134 RVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSEL---CQQGIAVVMSS 190
Query: 1441 HRITSVID-SDMVLLLSHGLIEEYDSPRKLL--ENKSSSF 1477
H + + +D V LL G + ++L EN + F
Sbjct: 191 HDLNHTLRHADRVWLLKQGKLLASGRRDEVLTPENLAQVF 230
|
Length = 248 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 8e-04
Identities = 57/230 (24%), Positives = 93/230 (40%), Gaps = 49/230 (21%)
Query: 1278 TGIVGRTGSGKSTLIQTLFRIVEP----AAGQILIDGIDI---SLIGLHDLRTRLSIIPQ 1330
+VG +GSGKS + ++ P +G+IL+DG + S+ G H ++ I Q
Sbjct: 15 LALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRH-----IATIMQ 69
Query: 1331 DPV------------MFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKV 1378
+P E T+RS ++ I EAL+ L E L
Sbjct: 70 NPRTAFNPLFTMGNHAIE-TLRSLGKLSKQARA-LILEALEAVGL----PDPEEVLKKYP 123
Query: 1379 TE-NGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQ-------QSLRQH 1430
+ +G M QR ++ L LL L+ DE T T D + Q + LRQ
Sbjct: 124 FQLSG---GMLQRVMIALA--LLLEPPFLIADEPT----TDLDVVNQARVLKLLRELRQL 174
Query: 1431 FSDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLENKSSSFSQ 1479
F ++ I H + V +D V ++ G I E + +++ N ++
Sbjct: 175 F-GTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETTR 223
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 9e-04
Identities = 58/231 (25%), Positives = 99/231 (42%), Gaps = 46/231 (19%)
Query: 632 HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTL-----KLC-GTKAY 685
+K ++ + G +A+ G GSGKS+L + G + SG L L G +Y
Sbjct: 25 TVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSY 84
Query: 686 VAQ-------------SPWIQSGKIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGD 732
+Q +P + +I D L R N L+ EK +
Sbjct: 85 RSQRIRMIFQDPSTSLNPRQRISQILDFPL--------RLNTDLEPEQREKQI------I 130
Query: 733 QTV--VGERGIN-------LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFK 783
+T+ VG + L+ GQKQR+ +ARAL + + D+ +++D S L
Sbjct: 131 ETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLIN 190
Query: 784 EVLLGLLNSKTV--LYVTHQVEFLP-AADLVLVIKDGKITQAGKYTDVINS 831
++L L + + +YVT + + +D VLV+ G++ + G DV+ S
Sbjct: 191 -LMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVLAS 240
|
Length = 267 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 9e-04
Identities = 54/220 (24%), Positives = 93/220 (42%), Gaps = 49/220 (22%)
Query: 637 KDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG---TKAYVAQSPWIQ 693
++I+L+V G + + G VG+G++ L + G P G + L G AQ
Sbjct: 280 RNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQ----- 334
Query: 694 SGKIEDNILFGKEMDRERYNAVLDA------CSLEKDLEILSF----GDQTVVGER---- 739
++ +++ E DR+ LDA C+L + F + V ER
Sbjct: 335 --RLARGLVYLPE-DRQSSGLYLDAPLAWNVCALTHNR--RGFWIKPARENAVLERYRRA 389
Query: 740 -GI----------NLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLG 788
I LSGG +Q++ IA+ L + + D+P VD + +++
Sbjct: 390 LNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQ----- 444
Query: 789 LLNS-----KTVLYVTHQV-EFLPAADLVLVIKDGKITQA 822
L+ S VL+++ + E AD VLV+ G+I+ A
Sbjct: 445 LIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGA 484
|
Length = 510 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.001
Identities = 54/232 (23%), Positives = 100/232 (43%), Gaps = 32/232 (13%)
Query: 1272 FPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQI---LIDGIDISLIGLHD------LR 1322
+PGE GIVG +GSGKSTL+ L + P G + G ++ L L + +R
Sbjct: 27 YPGEV-LGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMR 85
Query: 1323 TRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGD----------EVRKKEG 1372
T + Q+P +G +R V + + A+ G+ EV
Sbjct: 86 TEWGFVHQNPR--DG-LRMRVSAGANIGERLM--AIGARHYGNIRATAQDWLEEVEIDPT 140
Query: 1373 KLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFS 1432
++D +S G +Q + + R L+ R +++ +DE T +D + + LR
Sbjct: 141 RIDDLPRA----FSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVR 196
Query: 1433 D--CTVITIAHRITSV-IDSDMVLLLSHGLIEEYDSPRKLLENKSSSFSQLV 1481
D VI + H + + + +L++ G + E ++L++ ++QL+
Sbjct: 197 DLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVLDDPQHPYTQLL 248
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 0.001
Identities = 54/224 (24%), Positives = 91/224 (40%), Gaps = 42/224 (18%)
Query: 637 KDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK------------- 683
+++ +++ G A+ G G GKS+LL + + G + L G
Sbjct: 24 ENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRI 83
Query: 684 ---AYVAQSP-------WIQSGKIEDNILFGK--EMDRERYNAVLDACSLEKDLEILSFG 731
A A +P + G+ LF + + D E + A I
Sbjct: 84 GLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATG------ITHLA 137
Query: 732 DQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLN 791
DQ+V LSGGQ+QR IA L Q+ I L D+P + +D L + LL LN
Sbjct: 138 DQSV-----DTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLE--LLSELN 190
Query: 792 SK---TVLYVTHQV-EFLPAADLVLVIKDGKITQAGKYTDVINS 831
+ T+ V H + + A ++ +++GKI G +++ +
Sbjct: 191 REKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVTA 234
|
Length = 265 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.001
Identities = 62/229 (27%), Positives = 91/229 (39%), Gaps = 52/229 (22%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKI---SGTLKLCGT-------- 682
LK +NL V G A+ G GSGKS+L I G P SGT+ G
Sbjct: 14 EILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGH-PSYEVTSGTILFKGQDLLELEPD 72
Query: 683 -KA----YVA-QSPWIQSGKIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQ--- 733
+A ++A Q P G L R NA A E+ L++L F
Sbjct: 73 ERARAGLFLAFQYPEEIPGVSNLEFL------RSALNARRSARG-EEPLDLLDFLKLLKA 125
Query: 734 --TVVG------ERGIN--LSGGQKQRIQIARALYQDADIYLFDDPFSA--VDAHTGSHL 781
++G R +N SGG+K+R +I + + + + D+ S +DA
Sbjct: 126 KLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDA------ 179
Query: 782 FKEVLLGLLNSKT----VLYVTHQVEFLP--AADLVLVIKDGKITQAGK 824
K V G+ + L +TH L D V V+ DG+I ++G
Sbjct: 180 LKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGD 228
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.001
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 743 LSGGQKQRIQIARAL----YQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYV 798
LSGG+K+ +A L + +Y+ D+ +D G L + +L L+ V+ +
Sbjct: 78 LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVI 137
Query: 799 THQVEFLPAADLVLVIK 815
TH E AD ++ IK
Sbjct: 138 THLPELAELADKLIHIK 154
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.002
Identities = 46/170 (27%), Positives = 79/170 (46%), Gaps = 11/170 (6%)
Query: 1264 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLI---GLHD 1320
VL +S + + IVG +GSGKSTL+ L + P +G ++ +G +S + +
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83
Query: 1321 LRTR-LSIIPQ-DPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSK 1377
LR + L I Q ++ + T NV PL ++ E + E+ G L+ +
Sbjct: 84 LRNQKLGFIYQFHHLLPDFTALENVAMPL-LIGKKKPAEINSRAL---EMLAAVG-LEHR 138
Query: 1378 VTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSL 1427
S G+RQ V + R L+ ++++ DE T ++D + I Q L
Sbjct: 139 ANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLL 188
|
Length = 233 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.002
Identities = 44/218 (20%), Positives = 93/218 (42%), Gaps = 32/218 (14%)
Query: 630 SSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQS 689
S P+++D++ + G + + G VG+ ++ ++ + G K +GT+ L G K +
Sbjct: 258 SLRQPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHG-KKINNHN 316
Query: 690 PW--IQSG-----------------KIEDNILFGKEMDRERYNAVLDACSLEKD------ 724
I G I N L + + +LD ++ D
Sbjct: 317 ANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVID 376
Query: 725 -LEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFK 783
+ + + G +T +G +LSGG +Q++ I R L +I + D+P +D +++
Sbjct: 377 SMRVKTPGHRTQIG----SLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQ 432
Query: 784 EVLLGLLNSKTVLYVTHQV-EFLPAADLVLVIKDGKIT 820
+ K ++ ++ ++ E L D +LV+ +G +
Sbjct: 433 LIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVA 470
|
Length = 491 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.003
Identities = 54/200 (27%), Positives = 93/200 (46%), Gaps = 26/200 (13%)
Query: 1279 GIVGRTGSGKSTLIQTLFRIVEPAA--GQILIDGIDISLIGLHD-LRTRLSIIPQD---- 1331
GI G G+G++ L+Q LF P G+I IDG + + + ++++P+D
Sbjct: 292 GIAGLVGAGRTELVQCLFG-AYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRD 350
Query: 1332 ---PVMFEGTVRSNVD--PLEEYTD-EQIWEALDKCQLGDEVRKKEGKLDSKVTENGENW 1385
PVM V N+ L+ +T +I +A + + + +++ + K S
Sbjct: 351 GIVPVM---GVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIA-RL 406
Query: 1386 SMGQRQLVCLGRVLLKRRKILMLDEATASVDTATD----NLIQQSLRQHFSDCTVITIAH 1441
S G +Q L + LL KIL+LDE T +D LI Q ++Q + +I I+
Sbjct: 407 SGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVA---IIVISS 463
Query: 1442 RITSVID-SDMVLLLSHGLI 1460
+ V+ SD VL++ G +
Sbjct: 464 ELPEVLGLSDRVLVMHEGKL 483
|
Length = 506 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.003
Identities = 57/234 (24%), Positives = 96/234 (41%), Gaps = 38/234 (16%)
Query: 1248 IDLRDLQVRYAPHMPFVLRGISCT-FPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQI 1306
+ + L Y P R +S +PGE GIVG +GSGK+TL++ + + P AG +
Sbjct: 7 LSVSGLSKLYGPGKGC--RDVSFDLYPGEV-LGIVGESGSGKTTLLKCISGRLTPDAGTV 63
Query: 1307 ---LIDGIDISLIGLHD------LRTRLSIIPQDP-------VMFEGTV--RSNVDPLEE 1348
+ DG L + + LRT + Q+P V G + R
Sbjct: 64 TYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARH 123
Query: 1349 YTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILML 1408
Y + + EA D + EV ++D +S G +Q + + R L+ R +++ +
Sbjct: 124 YGNIRA-EAQDWLE---EVEIDLDRIDDLPRT----FSGGMQQRLQIARNLVTRPRLVFM 175
Query: 1409 DEATASVDTATDNLIQQSLRQ--HFSDCTVITIAHRITSVIDSDMVLLLSHGLI 1460
DE T +D + + LR V+ + H D + LL+ L+
Sbjct: 176 DEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTH------DLAVARLLADRLM 223
|
Length = 258 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.004
Identities = 45/187 (24%), Positives = 80/187 (42%), Gaps = 34/187 (18%)
Query: 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1307
I L + Y H L I+ P + ++G +G+GKS+L++ L + P +G +
Sbjct: 3 IQLNGINCFYGAHQ--ALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLN 60
Query: 1308 IDG--IDISLI----GLHDLRTRLSIIPQD----PVMFEGTVRSNV--DPL------EEY 1349
I G D S + DLR + ++ Q P + TV+ N+ P ++
Sbjct: 61 IAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHL---TVQENLIEAPCRVLGLSKDQ 117
Query: 1350 TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLD 1409
+ + L + +L + L S GQ+Q V + R L+ ++L+ D
Sbjct: 118 ALARAEKLLKRLRLKPYADRYPLHL-----------SGGQQQRVAIARALMMEPQVLLFD 166
Query: 1410 EATASVD 1416
E TA++D
Sbjct: 167 EPTAALD 173
|
Length = 242 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.004
Identities = 58/241 (24%), Positives = 97/241 (40%), Gaps = 47/241 (19%)
Query: 1264 VLRGISCTF-PGEKKTGIVGRTGSGKSTLIQTLF-RIVEPAA-------GQILIDGIDIS 1314
+LR +S PG T ++GR G+GKSTL++ L + A G + ++G ++
Sbjct: 16 ILRDLSLRIEPGRV-TALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLA 74
Query: 1315 LIGLHDLRTRLSIIPQ--DPVMFEGTVRSNV-----------DPLEEYTDEQIWEALDKC 1361
I L +++PQ P F + R V L E W+AL
Sbjct: 75 AIDAPRLARLRAVLPQAAQPA-FAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALA 133
Query: 1362 QLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLK---------RRKILMLDEAT 1412
V + L S G+ V RVL + + L+LDE T
Sbjct: 134 GATALVGRDVTTL-----------SGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPT 182
Query: 1413 ASVDTATDNLIQQSLRQHFSD--CTVITIAHRIT-SVIDSDMVLLLSHGLIEEYDSPRKL 1469
A++D A + + ++R+ D V+ I H + +D + +L+ G I + +P +
Sbjct: 183 AALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAPADV 242
Query: 1470 L 1470
L
Sbjct: 243 L 243
|
Length = 272 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.004
Identities = 62/230 (26%), Positives = 98/230 (42%), Gaps = 37/230 (16%)
Query: 602 QPDLVEKQPRGSSETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSS 661
+ L +PR I + +G S++ P L +++ +V G + G G+GKS+
Sbjct: 251 RHALPANEPR------IVLNNGVVSYN---DRPILHNLSWQVNPGEHWQIVGPNGAGKST 301
Query: 662 LLSCILGEVPK-ISGTLKLCGTK--------------AYVAQSPWIQ---SGKIEDNILF 703
LLS I G+ P+ S L L G + YV+ S + S + + IL
Sbjct: 302 LLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILS 361
Query: 704 GKEMDRERYNAVLDACSLEKD--LEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDA 761
G Y AV D L+IL +T +LS GQ++ I RAL +
Sbjct: 362 GFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFH-SLSWGQQRLALIVRALVKHP 420
Query: 762 DIYLFDDPFSAVDAHTGSHL---FKEVLLGLLNSKT-VLYVTHQVEFLPA 807
+ + D+P +D L F +VL+ +T +L+V+H E PA
Sbjct: 421 TLLILDEPLQGLDP-LNRQLVRRFVDVLIS--EGETQLLFVSHHAEDAPA 467
|
Length = 490 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1495 | |||
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-277 Score=2638.18 Aligned_cols=1254 Identities=47% Similarity=0.786 Sum_probs=1167.4
Q ss_pred CCCCcccch--hHHHHHHhHHHHHHccccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHH
Q 000452 222 VTPYSNAGL--FSVLTYTWINSLIALGNKKTLDLEDVPQLDSGNSVVGVFATFKNKLETEAGLGSGLTTLKLIKAMFRSV 299 (1495)
Q Consensus 222 ~~p~~~a~~--~s~~~f~W~~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~al~~~~ 299 (1495)
++|.+.++. +|++||||++|++++|||++|+.+|+|+++++|+++.+.++|++.|+++.+ ++.++|+++++++++|
T Consensus 122 ~~~~~~~~~~~~S~~~f~W~~~l~~~g~k~~L~~~Dl~~l~~~d~s~~l~~~~~~~w~~~~~--~~~~~psl~~al~~~f 199 (1381)
T KOG0054|consen 122 PNPLPEASAGFLSRLTFSWMTPLLRKGYKKPLELKDLWSLSPEDSSETLVKRLESLWEKELG--RSGKKPSLLRALLRTF 199 (1381)
T ss_pred CCcccccchhHHHHHHHHHHHHHHHhhccCCCChhhcccCChhhhhhHHHHHHHHHHHHHhc--cccCCcHHHHHHHHHH
Confidence 344555555 999999999999999999999999999999999999999999999999862 2226789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 300 WKDVLLTALVAIVCTLATYVGPYLIDTLVQYLSGKRDFENEGYALVSAFCVAKLVECLCQRFFVFRLEQLGIRLRAALIA 379 (1495)
Q Consensus 300 ~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~g~rir~~L~~ 379 (1495)
|+++++.+++..+.+.+.+++|.+++.+++|+++++...+.||+++++++++.++++++.+||+|..+++|+|+|++|++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~P~lL~~li~~~~~~~~~~~~g~~~a~~lf~~~~l~~l~~~~~~~~~~~~g~r~R~al~~ 279 (1381)
T KOG0054|consen 200 GRTFLLSGIFLFLRDLAGFVGPLLLKKLILFFSEKRLPLNNGYLLAVLLFLASLLQSLLLHQYFFVSFRVGMRLRSALIS 279 (1381)
T ss_pred HHHHHHHHHHHHHHHHHccccHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHH
Confidence 99999999999999999999999999999999988656678999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcchhcCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 380 MIYNKGLKLSSQAKQGNTSGEIINFMTVDAERVAELSWYIHDPWLFLFEVALSFLILYKSLGIASVAAFFGTVIFMLVNV 459 (1495)
Q Consensus 380 ~iy~K~L~ls~~~~~~~~~G~i~nl~s~D~~~i~~~~~~~~~~w~~pl~i~~~~~lL~~~lG~~~l~gl~~~i~~~~~~~ 459 (1495)
+||+|+|++++.++++++.|+|+|+|++|++|+.++++++|.+|..|+|+++++++||.++|+++++|++++++++|+|.
T Consensus 280 ~IY~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~~~~h~~w~~Plqi~~~l~lLy~~LG~sa~~G~~~~il~~p~n~ 359 (1381)
T KOG0054|consen 280 AIYRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAACFLHLLWSAPLQIILALYLLYGLLGPSALAGVAVMVLLIPLNS 359 (1381)
T ss_pred HHHHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 460 PLSTVQEKFQNELMKSKDERMKATSEILRNMRILKLQGWELKFLSKTIDLRKSESGWLKRCLYTSSITSFVFWCAPTFVS 539 (1495)
Q Consensus 460 ~~~~~~~~~~~~~m~~~D~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~~~~~p~~v~ 539 (1495)
+++++++++|++.|+.+|+|++.|+|+|+|||+|||||||++|.++|++.|++|+++++|..+..+++.++++++|++++
T Consensus 360 ~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~~~~~~~~~~~p~lv~ 439 (1381)
T KOG0054|consen 360 FLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSALNSFLNFFSPVLVS 439 (1381)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-HhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCCCCCCcccE
Q 000452 540 VITFGTCI-LLKVPLESGKVLSAIATFRLLQILIYKLPAIISMTIQTKVSLQRIASFFCLDELQPDLVEKQPRGSSETAI 618 (1495)
Q Consensus 540 ~~~f~~~~-~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~~~~~~~~~~~~~i 618 (1495)
++||++|+ ..|+.+++.++|+++++||+|+.|+.++|..++.+.|++||++|+++||..+|.+++..+..+....+..+
T Consensus 440 ~~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~~~~~~~~~~i 519 (1381)
T KOG0054|consen 440 VVTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPDSVERSPDEAGENAI 519 (1381)
T ss_pred HHHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCccccccCCCCCCCceE
Confidence 99999999 77889999999999999999999999999999999999999999999999999988766544445566789
Q ss_pred EEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCeEEEEccCCcccCccHH
Q 000452 619 EIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIE 698 (1495)
Q Consensus 619 ~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~~ayv~Q~~~l~~~ti~ 698 (1495)
+++|++|+|+.++..++|+||||+|++|+++||||++||||||||++|+||+++.+|+|.++|.+|||||+|||+|||||
T Consensus 520 ~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI~ngTvr 599 (1381)
T KOG0054|consen 520 EIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWIQNGTVR 599 (1381)
T ss_pred EEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEeccccHhhCCcHH
Confidence 99999999997666679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCHHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHHHHHhccCCCEeEecCcCCccCHHHH
Q 000452 699 DNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTG 778 (1495)
Q Consensus 699 enI~fg~~~~~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~ 778 (1495)
|||+||.+||++||++|+++|+|++|++.||.||+|+|||||.||||||||||+||||+|+|+||||||||+||||+|++
T Consensus 600 eNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg 679 (1381)
T KOG0054|consen 600 ENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVG 679 (1381)
T ss_pred HhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCEEEEEecCCCccccCCEEEEEeCCEEEEecChHHHHhcCCchhHHHHHHHhhhcccccccCCCCC
Q 000452 779 SHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVINSGTDFMELVDAHKQALSTLDSIEGRPLS 858 (1495)
Q Consensus 779 ~~i~~~~~~~~~~~~tvIlvTH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 858 (1495)
+|||++|+++.+++||+|+|||++++++.||+|++|+||+|.+.|+|+|+++.+..+.++... ...+..+. ...+..
T Consensus 680 ~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~~~~~~~~l~~~--~~~~~~~~-~~~~~~ 756 (1381)
T KOG0054|consen 680 KHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLKSGGDFAELAHE--EESEQEEE-ASEKDL 756 (1381)
T ss_pred HHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHhcchhHHHHhhc--cchhhccc-cccccc
Confidence 999999999999999999999999999999999999999999999999999988888887322 21111110 000000
Q ss_pred CCCCCCCCCCCCCcccccccccccccccccccccccchhhhhhHHHHHhhcCchHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 000452 859 EKGSANGENDGTSATDGVVKEVENKEVQNDREDKVAEPQRQLVQEEEREKGKVEFSVYWKYITAAYGGVLVPFILLAQTL 938 (1495)
Q Consensus 859 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~~~~~~~~~~~~~~~~ 938 (1495)
+..+.... ... ......+...++....+....+..++|+++.|.|+|++|+.|+++++|+...++++++.++
T Consensus 757 ~~~~~~~~-------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~G~v~~~vY~~Y~~a~~g~~~~~~~~~~~v~ 828 (1381)
T KOG0054|consen 757 ESGESSRE-------SES-RSLESLSSEEEKSKDEKEEEDKLVQEEERETGKVSWSVYKKYIKAAGGFLLVLLILLLFVL 828 (1381)
T ss_pred cccccccc-------hhh-hhhhhhcccccccccccchhhHHHHHHHHhcCEeeHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 00000000 000 0000000000011112223567788899999999999999999998888878888888999
Q ss_pred HHHHHHhhHHHHHhhcccCCCCCCC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccc
Q 000452 939 FQILQIASNYWIAWATPASKDIKPR-VTGSMLLIVFVALAFGSSFCILARSTLLATAGYKTATLLFNKMHYCIFRAPMSF 1017 (1495)
Q Consensus 939 ~~~~~~~~~~wl~~~~~~~~~~~~~-~~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~ll~ap~~f 1017 (1495)
.+++.++++||+++|++........ .+..+|+++|.+++++++++.++|++++..+++++|+.+|++|+++++|+||+|
T Consensus 829 ~~~~~~~~~~WLs~W~~~~~~~~~~~~~~~~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~F 908 (1381)
T KOG0054|consen 829 TQVLQIASNYWLSYWTDDGEDNGTTTVSTSFYLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSF 908 (1381)
T ss_pred HHHHHHHHHHHHHHhcCCcccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchh
Confidence 9999999999999998654322211 467789999999999999999999999999999999999999999999999999
Q ss_pred ccccccccchhHHhcchhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 1018 FDATPSGRIINRASTDQSAVDLSIPALIGSFAFSIIRVLGVIGVMSLVAWQVFIVFIPVIATCIWYQQYYISSARELSRL 1097 (1495)
Q Consensus 1018 fd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~ip~~~~~~~~~~~y~~~~r~l~rl 1097 (1495)
||+||+|||+||||+|++.+|..+|..+..++.++++++++++++++++|+++++++|+.++|+++++||++++||++|+
T Consensus 909 FdtTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRL 988 (1381)
T KOG0054|consen 909 FDTTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRL 988 (1381)
T ss_pred cCCCCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhHHHHHHHhhcchHHHHhhccHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000452 1098 VGVCKAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGYSRPTFHVAAAMEWLGFRLDMLSNITFAFSLVFLISIPK 1177 (1495)
Q Consensus 1098 ~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~~~~~~~~~~~~~~~~ 1177 (1495)
++.+|||+++||+||++|+.|||||++|++|.+++.+++|.+++++|+..+++||+++|+|+++++++++++++.+..+.
T Consensus 989 esitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~vl~~~ 1068 (1381)
T KOG0054|consen 989 ESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLSISANRWLAVRLELLGNLVVLIAALFAVLLPS 1068 (1381)
T ss_pred hhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998887776
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCCCCCccccCCCCCCCCCcceEEEeeeeEEe
Q 000452 1178 GFIDPAIAGLAVTYGLTLNNLQAMLIWLACQMENKIISVERIFQYTCIPSEPPLEIEESRPNHSWPSHGKIDLRDLQVRY 1257 (1495)
Q Consensus 1178 ~~~~~~~~gl~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nv~~~Y 1257 (1495)
+..+||.+|++++|++++++.++|++++.+++|++|+|||||.||+++|+|+|+..+..+||++||++|+|+|+|+++||
T Consensus 1069 ~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RY 1148 (1381)
T KOG0054|consen 1069 GLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRY 1148 (1381)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEe
Confidence 65889999999999999999999999999999999999999999999999988877777799999999999999999999
Q ss_pred CCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccEEEcccCcCCCC
Q 000452 1258 APHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSIIPQDPVMFEG 1337 (1495)
Q Consensus 1258 ~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~isiIpQdp~LF~G 1337 (1495)
+|+.|+|||||||+|+||||||||||||||||||+++|||+.||.+|+|.|||+||+++++||||++++||||||+||+|
T Consensus 1149 rp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsG 1228 (1381)
T KOG0054|consen 1149 RPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSG 1228 (1381)
T ss_pred CCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHhcCCCCCCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCeEEEEcCCCCCCH
Q 000452 1338 TVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDT 1417 (1495)
Q Consensus 1338 TIR~NLdp~~~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALLr~~~ILiLDEaTsslD~ 1417 (1495)
|||+||||+++|+|+|||+|||+|+|+++|+++|+|||++|.|+|+|||+||||++||||||||++|||||||||||||+
T Consensus 1229 TvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~ 1308 (1381)
T KOG0054|consen 1229 TVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDP 1308 (1381)
T ss_pred ccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEecCchhhhccCEEEEEeCcEEEEecChhHHhhcCCChHHHHHHHHhhcc
Q 000452 1418 ATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSFSQLVAEYTQRS 1488 (1495)
Q Consensus 1418 ~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~ivE~gsp~~Ll~~~~s~f~~lv~~~~~~~ 1488 (1495)
+||+.||++||++|+|||||+||||++||+|||||+|||+|+|+|+|+|++|+++++|.|++++.++..++
T Consensus 1309 ~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~G~v~EfdsP~~Ll~~~~S~f~~~l~~~~~~~ 1379 (1381)
T KOG0054|consen 1309 ETDALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFDSPAELLSDKDSLFSSLLKEAALSS 1379 (1381)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeCCeEeecCChHHHHhCCcchHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999988764
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-214 Score=2176.20 Aligned_cols=1438 Identities=32% Similarity=0.531 Sum_probs=1190.7
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000452 7 FLLKQAFLRGASGSLHLFLLLGLFGLWVWKKLKVGEGDHSGGSKERFKNKKALWYKLTLVCCFVVSLSSLVLCLLSYFYW 86 (1495)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (1495)
|.||+++.+..++..++++++.....+..++..+. ...............+.++++....+++...+... ...
T Consensus 29 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 101 (1622)
T PLN03130 29 YTPCATDSLVINISHLVLLGLCLYRIWLIKKDHKV------QRFCLRSKWYNYFLALLAAYCTAEPLFRLVMGISV-LNL 101 (1622)
T ss_pred CCccHHhhHHHHHHHHHHHHHHHHHHHHhcccccc------CCccccchHHHHHHHHHHHHHHHHHHHHHHHHhhh-hcc
Confidence 78999998888877777544444333333221111 00001011122234445555555555443333332 222
Q ss_pred cCC-CcccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHH---HHHHHHHhhhhh-hhhccccccc
Q 000452 87 YGN-GRSYDQLVILFDFGVRTLGWGAICVYLRTVFLNLRQPKLPMLLKIWWGFY---VFISCYCLIVDI-VLYQKQVNLP 161 (1495)
Q Consensus 87 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~ 161 (1495)
.+. .+.......+...++..+++++.......++.++. .+++.+++||++. .++.++ ... ..+... ...
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~ 175 (1622)
T PLN03130 102 DGQTSLPPFEIVSLIVEALTWCSMLVMIGVETKIYIREF--RWYVRFAVIYVLVGDAVMLNLV---LSVKEYYSSF-VLY 175 (1622)
T ss_pred ccccccccchhHHhHHHHHHHHHHHHHHHHHHHHHHhcC--CCcceeehhHHHhhHHHHHHHH---HHHHHHHhcc-ccc
Confidence 221 12222333244445555555555553324443333 5789999999887 555555 222 222221 011
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhcccccCccccccccCCCcCCCCCCcCccccccCCCCCCCCCCcccchhHHHHHHhHHH
Q 000452 162 IQYLVSDVVSVITGLFPCFVGFMSKIEGEDTLILQEPLLKVDSGESEGTVASIKSRGADTVTPYSNAGLFSVLTYTWINS 241 (1495)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~~~s~~~f~W~~p 241 (1495)
.......+++..+++++ +.+...++. +...|... +.. .+.+.++.+...+++||++||+|||++|+|++|
T Consensus 176 -~~~~~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~-~~~---~~~~~~~~~~~~~~~pe~~a~~~s~~~F~W~~p 245 (1622)
T PLN03130 176 -LYISEVAAQVLFGILLL-VYFPNLDPY----PGYTPIGS-ESV---DDYEYEELPGGEQICPERHANIFSRIFFGWMTP 245 (1622)
T ss_pred -eehhHHHHHHHHHHHHH-HHHhcCCCC----cccccccc-ccc---ccccccCCcccCCCCcccccCHHHHHHHHHHHH
Confidence 12223333433333331 111111110 01111110 000 000111223346779999999999999999999
Q ss_pred HHHccccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 242 LIALGNKKTLDLEDVPQLDSGNSVVGVFATFKNKLETEAGLGSGLTTLKLIKAMFRSVWKDVLLTALVAIVCTLATYVGP 321 (1495)
Q Consensus 242 l~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~l~~~~~~~~~P 321 (1495)
++++||+++|+.+|||+|+++|+++.++++|++.|+++. ++++++++++++++||+.+++.++++++..++.+++|
T Consensus 246 l~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~----~~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~P 321 (1622)
T PLN03130 246 LMQLGYKRPLTEKDVWKLDTWDQTETLYRSFQKCWDEEL----KKPKPWLLRALNNSLGGRFWLGGFFKIGNDLSQFVGP 321 (1622)
T ss_pred HHHHHhcCCCChhhccCCChhhhHHHHHHHHHHHHHHHh----ccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999765 2345789999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhcCCCHHHH
Q 000452 322 YLIDTLVQYLSGKRDFENEGYALVSAFCVAKLVECLCQRFFVFRLEQLGIRLRAALIAMIYNKGLKLSSQAKQGNTSGEI 401 (1495)
Q Consensus 322 ~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~g~rir~~L~~~iy~K~L~ls~~~~~~~~~G~i 401 (1495)
++++.+++++.+++ ....++.++++++++.++.+++.++|.+...++++++|+.++..+|+|+++++...+++.++|++
T Consensus 322 ~ll~~li~~v~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~i~~k~L~l~~~~~~~~~~G~i 400 (1622)
T PLN03130 322 LLLNLLLESMQNGE-PAWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRLTHEGRKKFTSGKI 400 (1622)
T ss_pred HHHHHHHHHHhcCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHH
Confidence 99999999997543 23457777777777777777888888888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 402 INFMTVDAERVAELSWYIHDPWLFLFEVALSFLILYKSLGIASVAAFFGTVIFMLVNVPLSTVQEKFQNELMKSKDERMK 481 (1495)
Q Consensus 402 ~nl~s~D~~~i~~~~~~~~~~w~~pl~i~~~~~lL~~~lG~~~l~gl~~~i~~~~~~~~~~~~~~~~~~~~m~~~D~R~~ 481 (1495)
+|+|++|++++.+++..+|.+|..|+++++++++||..+|+++++|++++++++|++.++.++.++.+++.|+.+|+|.+
T Consensus 401 vnl~s~Dv~~i~~~~~~l~~l~~~pl~ii~~~~lL~~~lg~~~l~g~~v~~l~~~l~~~~~~~~~~~~~~~~~~~d~r~~ 480 (1622)
T PLN03130 401 TNLMTTDAEALQQICQQLHTLWSAPFRIIIAMVLLYQQLGVASLIGSLMLVLMFPIQTFIISKMQKLTKEGLQRTDKRIG 480 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHH
Q 000452 482 ATSEILRNMRILKLQGWELKFLSKTIDLRKSESGWLKRCLYTSSITSFVFWCAPTFVSVITFGTCILLKVPLESGKVLSA 561 (1495)
Q Consensus 482 ~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~~~~~p~~v~~~~f~~~~~~~~~L~~~~vft~ 561 (1495)
.++|+++|||+||+|+||+.|.+++++.|++|+++.++..+..++..++....|.++++++|++|.+.++++|++.+|++
T Consensus 481 ~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fg~~~~~~g~Lt~g~vf~~ 560 (1622)
T PLN03130 481 LMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNSFILNSIPVLVTVVSFGVFTLLGGDLTPARAFTS 560 (1622)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999888888887888888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCCCCCCcccEEEEeeEEEecCCCCCCccccceE
Q 000452 562 IATFRLLQILIYKLPAIISMTIQTKVSLQRIASFFCLDELQPDLVEKQPRGSSETAIEIADGNFSWDISSHNPTLKDINL 641 (1495)
Q Consensus 562 lalf~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~L~~i~l 641 (1495)
+++++.+..|+..+|..+..+.++++|++||++|+..+|....... +.......|+++|++|+|+..+++++|+|+||
T Consensus 561 l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~~~~--~~~~~~~~I~~~nvsf~y~~~~~~~vL~~inl 638 (1622)
T PLN03130 561 LSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLLPNP--PLEPGLPAISIKNGYFSWDSKAERPTLSNINL 638 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCC--cccCCCCceEEEeeEEEccCCCCCceeeceeE
Confidence 9999999999999999999999999999999999987765321111 11111246999999999975445689999999
Q ss_pred EeeCCcEEEEEecCCccHHHHHHHHhCCCCCCC-cEEEEcCeEEEEccCCcccCccHHHHHhcCCCCCHHHHHHHHHHhC
Q 000452 642 KVFHGMRVAVCGTVGSGKSSLLSCILGEVPKIS-GTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMDRERYNAVLDACS 720 (1495)
Q Consensus 642 ~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~-G~v~~~g~~ayv~Q~~~l~~~ti~enI~fg~~~~~~~~~~vl~~~~ 720 (1495)
++++|++++|+||+|||||||+++|+|+++|.+ |+|.+.|+++||+|+||++++||||||+||.++|+++|++++++|+
T Consensus 639 ~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~y~~vl~a~~ 718 (1622)
T PLN03130 639 DVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTA 718 (1622)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCccccCCCCHHHHHhCCCcccHHHHHHHHHHhC
Confidence 999999999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred cHHHHhhcCCCCcccccCCCCccchHHHHHHHHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEec
Q 000452 721 LEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTH 800 (1495)
Q Consensus 721 l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH 800 (1495)
|++|++.+|+||+|+|||+|.+|||||||||+||||+|++||||||||||||||++++++++++|+.+.+++||+|+|||
T Consensus 719 L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH 798 (1622)
T PLN03130 719 LQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTN 798 (1622)
T ss_pred cHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999988889999999999
Q ss_pred CCCccccCCEEEEEeCCEEEEecChHHHHhcCCchhHHHHHHHhhhcccccccCCCCCCCCCCCCCCCCCCccccccccc
Q 000452 801 QVEFLPAADLVLVIKDGKITQAGKYTDVINSGTDFMELVDAHKQALSTLDSIEGRPLSEKGSANGENDGTSATDGVVKEV 880 (1495)
Q Consensus 801 ~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 880 (1495)
+++.++.||+|++|++|+|++.|+++|+.+.+..|.++...+....+.. . .....+.................
T Consensus 799 ~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~~~~~~~~l~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~---- 871 (1622)
T PLN03130 799 QLHFLSQVDRIILVHEGMIKEEGTYEELSNNGPLFQKLMENAGKMEEYV-E--ENGEEEDDQTSSKPVANGNANNL---- 871 (1622)
T ss_pred CHhHHHhCCEEEEEeCCEEEEeCCHHHHHhcchhHHHHHHhcccccccc-c--ccccccccccccccccccccccc----
Confidence 9999999999999999999999999999988777777765432110000 0 00000000000000000000000
Q ss_pred ccccccccccccccchhhhhhHHHHHhhcCchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhcccCCCC
Q 000452 881 ENKEVQNDREDKVAEPQRQLVQEEEREKGKVEFSVYWKYITAAYGGVLVPFILLAQTLFQILQIASNYWIAWATPASKDI 960 (1495)
Q Consensus 881 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~ 960 (1495)
.+... ...........+.++|+++.|.+++++|+.|+++.++.+++.+++++.++.+++.+++++|+++|++....
T Consensus 872 --~~~~~-~~~~~~~~~~~~~~~e~~~~g~v~~~vy~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~- 947 (1622)
T PLN03130 872 --KKDSS-SKKKSKEGKSVLIKQEERETGVVSWKVLERYKNALGGAWVVMILFLCYVLTEVFRVSSSTWLSEWTDQGTP- 947 (1622)
T ss_pred --ccccc-ccccccccchhhhhHHHHhcCccCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-
Confidence 00000 00000111223556788899999999999999997766666666666778888999999999998853211
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccccccccccchhHHhcchhHHHhh
Q 000452 961 KPRVTGSMLLIVFVALAFGSSFCILARSTLLATAGYKTATLLFNKMHYCIFRAPMSFFDATPSGRIINRASTDQSAVDLS 1040 (1495)
Q Consensus 961 ~~~~~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~ll~ap~~ffd~tp~G~ilnR~s~D~~~vd~~ 1040 (1495)
.......|+++|++++++..++.+++.++....+.++++++|++++++++++|++|||++|+|+|+|||++|++.+|..
T Consensus 948 -~~~~~~~~~~i~~~l~~~~~i~~~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~ 1026 (1622)
T PLN03130 948 -KTHGPLFYNLIYALLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRN 1026 (1622)
T ss_pred -CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHHHHHHHHHH
Confidence 1223456788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcchHHHH
Q 000452 1041 IPALIGSFAFSIIRVLGVIGVMSLVAWQVFIVFIPVIATCIWYQQYYISSARELSRLVGVCKAPLIQHFAETVSGSTTIR 1120 (1495)
Q Consensus 1041 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~ip~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIR 1120 (1495)
+|..+..++..++.+++.++++++++|..+++++|+++++++++++|.+++|+++|++..+++|+++|++|+++|+.|||
T Consensus 1027 l~~~~~~~~~~~~~~i~~~i~i~~~~~~~~~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIr 1106 (1622)
T PLN03130 1027 VAVFVNMFLGQIFQLLSTFVLIGIVSTISLWAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIR 1106 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHH
Confidence 99999999999999999999999999888888888888888899999999999999999999999999999999999999
Q ss_pred hhccHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----CCHHHHHHHHHHHHHH
Q 000452 1121 SFDQESRFIDTNMELMDGYSRPTFHVAAAMEWLGFRLDMLSNITFAFSLVFLISIPKGF-----IDPAIAGLAVTYGLTL 1195 (1495)
Q Consensus 1121 af~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~gl~l~~~~~l 1195 (1495)
+|+++++|.+++.+..|.+.+..+.....++|++.++++++.+++.+.+.+.+.. .+. ..++.+|++++|++.+
T Consensus 1107 af~~~~~f~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~i~~~~~~~v~~-~~~~~~~~~~~~~~G~~ls~~~~~ 1185 (1622)
T PLN03130 1107 AYKAYDRMAEINGRSMDNNIRFTLVNMSSNRWLAIRLETLGGLMIWLTASFAVMQ-NGRAENQAAFASTMGLLLSYALNI 1185 (1622)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-ccccccchhhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999887666555443332 221 1268899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCCCCCccccCCCCCCCCCcceEEEeeeeEEeCCCCCcceeeeeEEeeCC
Q 000452 1196 NNLQAMLIWLACQMENKIISVERIFQYTCIPSEPPLEIEESRPNHSWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGE 1275 (1495)
Q Consensus 1196 ~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nv~~~Y~~~~~~vL~~Is~~I~~G 1275 (1495)
...+.++.+.+..+|+.++|+||+.+|++.|+|++...++..+++.||.+|.|+|+||+|+|+++.++||+||||+|+||
T Consensus 1186 ~~~l~~l~~~~~~~e~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~VL~~is~~I~~G 1265 (1622)
T PLN03130 1186 TSLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFEISPS 1265 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCCceecceeEEEcCC
Confidence 99999999999999999999999999999998876544445567789999999999999999988888999999999999
Q ss_pred cEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccEEEcccCcCCCCcHHHhcCCCCCCCHHHHH
Q 000452 1276 KKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIW 1355 (1495)
Q Consensus 1276 ekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~isiIpQdp~LF~GTIR~NLdp~~~~sd~ei~ 1355 (1495)
||||||||||||||||+++|+|+++|++|+|.|||+||+++++++||++|++|||||+||+||||+||||+++++|+|+|
T Consensus 1266 ekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~ 1345 (1622)
T PLN03130 1266 EKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLW 1345 (1622)
T ss_pred CEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcCCcE
Q 000452 1356 EALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCT 1435 (1495)
Q Consensus 1356 ~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~~~T 1435 (1495)
+||++|+++++|.++|+||||+|+|+|.||||||||||||||||||+|+|||||||||+||.+||+.||++|++.+++||
T Consensus 1346 ~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~T 1425 (1622)
T PLN03130 1346 ESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCT 1425 (1622)
T ss_pred HHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCchhhhccCEEEEEeCcEEEEecChhHHhhcCCChHHHHHHHHhhc
Q 000452 1436 VITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSFSQLVAEYTQR 1487 (1495)
Q Consensus 1436 VI~IAHRl~ti~~~DrIlVL~~G~ivE~gsp~~Ll~~~~s~f~~lv~~~~~~ 1487 (1495)
||+||||++|+++||||+|||+|+|+|+|+|++|+++++|.|++|+++.+..
T Consensus 1426 vI~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~~eLl~~~~g~f~~L~~~~~~~ 1477 (1622)
T PLN03130 1426 MLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGSAFSKMVQSTGAA 1477 (1622)
T ss_pred EEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCCHHHHHHHHcChh
Confidence 9999999999999999999999999999999999988789999999987753
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-210 Score=2134.84 Aligned_cols=1433 Identities=30% Similarity=0.508 Sum_probs=1184.7
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHh-hccCCCCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000452 7 FLLKQAFLRGASGSLHLFLLLGLFGLWVWK-KLKVGEGDHSGGSKERFKNKKALWYKLTLVCCFVVSLSSLVLCLLSYFY 85 (1495)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (1495)
|.||+++.+..++..++++++.....+... +.+.+ + .. ...........+.++++....+++...+... ..
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 100 (1495)
T PLN03232 29 YTPCAIDSLVMIVSHSVLLGLCFYRIWIILDNAKAQ-I----YV--LRKKYYNCVLGILACYCVVEPVLRLVMGISL-FD 100 (1495)
T ss_pred CCccHHhhHHHHHHHHHHHHHHHHHHHHHhhccccC-C----cc--ccchHHHHHHHHHHHHHHHHHHHHHHHHhhh-hc
Confidence 789999988877777774444433333221 11111 0 11 1011112233444455554444443333222 22
Q ss_pred hcCC-CcccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHH---HHHHHHHhhhhh-hhhcccccc
Q 000452 86 WYGN-GRSYDQLVILFDFGVRTLGWGAICVYLRTVFLNLRQPKLPMLLKIWWGFY---VFISCYCLIVDI-VLYQKQVNL 160 (1495)
Q Consensus 86 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~ 160 (1495)
+.+. .+.......+...++..++++++......++.++. .+++.+++||++. .++.+. ... ...... ..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~ 174 (1495)
T PLN03232 101 MDEETDLPPFEVASLMVEAFAWFSMLVLIGLETKQYVKEF--RWYVRFGVVYVLVADAVLLDLV---LPLKNSINRT-AL 174 (1495)
T ss_pred cccccccccchhHHhHHHHHHHHHHHHHHHHHHHHHHhcC--CCCceeeehhHhhhhHHHHHHH---HHHHHHHhcc-cc
Confidence 2221 12122223244456666666655553334443333 4789999999887 555555 222 222221 01
Q ss_pred chhhhHHHHHHHHHHHHH-HHHhhcccccCccccccccCCCcCCCCCCcCccccccCCCCCCCCCCcccchhHHHHHHhH
Q 000452 161 PIQYLVSDVVSVITGLFP-CFVGFMSKIEGEDTLILQEPLLKVDSGESEGTVASIKSRGADTVTPYSNAGLFSVLTYTWI 239 (1495)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~~~s~~~f~W~ 239 (1495)
. ......++.+..+++. ++.-+..+. + ...+... +. ..|.+.+..|.....+||++||+|||+||+|+
T Consensus 175 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~-~~---~~~~~~~~~~~~~~~~pe~~a~~~s~~~f~w~ 243 (1495)
T PLN03232 175 Y-LCISSRCCQALFGILLLVYIPELDPY--P----GYHILNN-ES---LDNVEYDALRGGENICPERYASIFSRIYFSWM 243 (1495)
T ss_pred c-eehhHHHHHHHHHHHHHHhcccCCCC--C----ccccccc-cc---ccccccccccccCCCCccccCCHHHHHHHHHH
Confidence 1 1122222333333222 111111110 0 0100000 00 00011223344567899999999999999999
Q ss_pred HHHHHccccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 240 NSLIALGNKKTLDLEDVPQLDSGNSVVGVFATFKNKLETEAGLGSGLTTLKLIKAMFRSVWKDVLLTALVAIVCTLATYV 319 (1495)
Q Consensus 240 ~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~l~~~~~~~~ 319 (1495)
+|++++||+++|+.+|||+|+++|+++.++++|++.|+++. +.++++++++++++||+.++..++++++.+++.++
T Consensus 244 ~pl~~~g~~~~L~~~dl~~l~~~~~~~~~~~~~~~~w~~~~----~~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~ 319 (1495)
T PLN03232 244 TPLMQLGYRKPITEKDVWQLDQWDQTETLIKRFQRCWTEES----RRPKPWLLRALNNSLGGRFWLGGIFKIGHDLSQFV 319 (1495)
T ss_pred HHHHHHHhcCCCChhhccCCChhhhHHHHHHHHHHHHHHhh----ccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999765 22457999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhcCCCHH
Q 000452 320 GPYLIDTLVQYLSGKRDFENEGYALVSAFCVAKLVECLCQRFFVFRLEQLGIRLRAALIAMIYNKGLKLSSQAKQGNTSG 399 (1495)
Q Consensus 320 ~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~g~rir~~L~~~iy~K~L~ls~~~~~~~~~G 399 (1495)
+|++++.+++++++++. ...++.++++++++.++.+++.++|.+...+++.++|+.++..+|+|.++++...++++++|
T Consensus 320 ~P~ll~~li~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~l~~~i~~k~l~l~~~~~~~~~~G 398 (1495)
T PLN03232 320 GPVILSHLLQSMQEGDP-AWVGYVYAFLIFFGVTFGVLCESQYFQNVGRVGFRLRSTLVAAIFHKSLRLTHEARKNFASG 398 (1495)
T ss_pred HHHHHHHHHHHHhcCCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHH
Confidence 99999999999976442 34578888888888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 400 EIINFMTVDAERVAELSWYIHDPWLFLFEVALSFLILYKSLGIASVAAFFGTVIFMLVNVPLSTVQEKFQNELMKSKDER 479 (1495)
Q Consensus 400 ~i~nl~s~D~~~i~~~~~~~~~~w~~pl~i~~~~~lL~~~lG~~~l~gl~~~i~~~~~~~~~~~~~~~~~~~~m~~~D~R 479 (1495)
+++|+|++|++++.+++..+|.+|..|++++++++++|..+|++++++++++++++|++.++++..++.+++.++.+|+|
T Consensus 399 ~i~n~ls~Dv~~i~~~~~~l~~l~~~p~~ii~~~~~l~~~lg~~~l~~~~v~~l~~pl~~~~~~~~~~~~~~~~~~~d~r 478 (1495)
T PLN03232 399 KVTNMITTDANALQQIAEQLHGLWSAPFRIIVSMVLLYQQLGVASLFGSLILFLLIPLQTLIVRKMRKLTKEGLQWTDKR 478 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999989999999999999999999999999999
Q ss_pred HHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHH
Q 000452 480 MKATSEILRNMRILKLQGWELKFLSKTIDLRKSESGWLKRCLYTSSITSFVFWCAPTFVSVITFGTCILLKVPLESGKVL 559 (1495)
Q Consensus 480 ~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~~~~~p~~v~~~~f~~~~~~~~~L~~~~vf 559 (1495)
.+.++|+++|||+||+|+||+.+.+++++.|++|++..++..+..+...++....|.++++++|++|.+.++++|++.+|
T Consensus 479 ~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~~~v~~~~lt~g~vf 558 (1495)
T PLN03232 479 VGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNSIPVVVTLVSFGVFVLLGGDLTPARAF 558 (1495)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999888887777777788888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCCCCCCcccEEEEeeEEEecCCCCCCccccc
Q 000452 560 SAIATFRLLQILIYKLPAIISMTIQTKVSLQRIASFFCLDELQPDLVEKQPRGSSETAIEIADGNFSWDISSHNPTLKDI 639 (1495)
Q Consensus 560 t~lalf~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~L~~i 639 (1495)
+++++++.+..|+..+|..+..+.++++|++||++|++.+|...+... +.......|+++|++|+|+...++++|+|+
T Consensus 559 ~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~~~--~~~~~~~~I~~~~vsF~y~~~~~~~vL~~i 636 (1495)
T PLN03232 559 TSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQNP--PLQPGAPAISIKNGYFSWDSKTSKPTLSDI 636 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccC--CcCCCCCcEEEEeeEEEcCCCCCCceeeee
Confidence 999999999999999999999999999999999999987653221111 111122469999999999754456899999
Q ss_pred eEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcE-EEEcCeEEEEccCCcccCccHHHHHhcCCCCCHHHHHHHHHH
Q 000452 640 NLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGT-LKLCGTKAYVAQSPWIQSGKIEDNILFGKEMDRERYNAVLDA 718 (1495)
Q Consensus 640 ~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~-v~~~g~~ayv~Q~~~l~~~ti~enI~fg~~~~~~~~~~vl~~ 718 (1495)
||++++||+++|+||+|||||||+++|+|+++|++|. +.+.+.+|||+|+||+|++||||||+||.++++++|++++++
T Consensus 637 nl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~~~~vl~~ 716 (1495)
T PLN03232 637 NLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDV 716 (1495)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccccccHHHHhhcCCccCHHHHHHHHHH
Confidence 9999999999999999999999999999999999974 577899999999999999999999999999999999999999
Q ss_pred hCcHHHHhhcCCCCcccccCCCCccchHHHHHHHHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEE
Q 000452 719 CSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYV 798 (1495)
Q Consensus 719 ~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlv 798 (1495)
|+|++|++.+|+||+|+|||+|.+|||||||||+||||+|++||||||||||||||++++++++++|+.+.+++||+|+|
T Consensus 717 ~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~Ilv 796 (1495)
T PLN03232 717 TALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLV 796 (1495)
T ss_pred hCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888889999999
Q ss_pred ecCCCccccCCEEEEEeCCEEEEecChHHHHhcCCchhHHHHHHHhhhcccccccCCCCCCCCCCCCCCCCCCccccccc
Q 000452 799 THQVEFLPAADLVLVIKDGKITQAGKYTDVINSGTDFMELVDAHKQALSTLDSIEGRPLSEKGSANGENDGTSATDGVVK 878 (1495)
Q Consensus 799 TH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 878 (1495)
||+++.++.||+|++|++|+|++.|+++|+.+.+..+.++...+....... +..+ ..+....... .....
T Consensus 797 TH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~~~~~~~~l~~~~~~~~~~~---~~~~-~~~~~~~~~~-----~~~~~- 866 (1495)
T PLN03232 797 TNQLHFLPLMDRIILVSEGMIKEEGTFAELSKSGSLFKKLMENAGKMDATQ---EVNT-NDENILKLGP-----TVTID- 866 (1495)
T ss_pred ECChhhHHhCCEEEEEeCCEEEEecCHHHHHhcchhHHHHHHhcccccccc---cccc-cccccccccc-----ccccc-
Confidence 999999999999999999999999999999988777777765432210000 0000 0000000000 00000
Q ss_pred ccccccccccccccccchhhhhhHHHHHhhcCchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhcccCC
Q 000452 879 EVENKEVQNDREDKVAEPQRQLVQEEEREKGKVEFSVYWKYITAAYGGVLVPFILLAQTLFQILQIASNYWIAWATPASK 958 (1495)
Q Consensus 879 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~ 958 (1495)
.. .+.. ....+.+.....+.++|++++|.+++++|++|+++.++.+++.+++++.++.++..+++++|+++|++...
T Consensus 867 ~~--~~~~-~~~~~~~~~~~~~~~~e~~~~g~v~~~vy~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~ 943 (1495)
T PLN03232 867 VS--ERNL-GSTKQGKRGRSVLVKQEERETGIISWNVLMRYNKAVGGLWVVMILLVCYLTTEVLRVSSSTWLSIWTDQST 943 (1495)
T ss_pred cc--cccc-ccccccccchhhhhhHHHHhcCcccHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 00 0000 00000011122356778899999999999999999776666666666677788889999999998885321
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccccccccccchhHHhcchhHHH
Q 000452 959 DIKPRVTGSMLLIVFVALAFGSSFCILARSTLLATAGYKTATLLFNKMHYCIFRAPMSFFDATPSGRIINRASTDQSAVD 1038 (1495)
Q Consensus 959 ~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~ll~ap~~ffd~tp~G~ilnR~s~D~~~vd 1038 (1495)
. .......|+++|++++++..++.+++.+++...+.++++++|++++++++++|++|||++|+|+++||+++|++.+|
T Consensus 944 ~--~~~~~~~~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~id 1021 (1495)
T PLN03232 944 P--KSYSPGFYIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDID 1021 (1495)
T ss_pred C--CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCcCCchHHHHHhHhhHHHHH
Confidence 1 12234678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcchHH
Q 000452 1039 LSIPALIGSFAFSIIRVLGVIGVMSLVAWQVFIVFIPVIATCIWYQQYYISSARELSRLVGVCKAPLIQHFAETVSGSTT 1118 (1495)
Q Consensus 1039 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~ip~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~t 1118 (1495)
..++..+..++..++.+++.+++++++++..+++++|+.++++.++.+|.+++|+++|.+..+++|+++|++|+++|+.|
T Consensus 1022 ~~l~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~t 1101 (1495)
T PLN03232 1022 RNVANLMNMFMNQLWQLLSTFALIGTVSTISLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSS 1101 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHH
Confidence 99999999999999999999988888888777778888888888899999999999999999999999999999999999
Q ss_pred HHhhccHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-----CHHHHHHHHHHHH
Q 000452 1119 IRSFDQESRFIDTNMELMDGYSRPTFHVAAAMEWLGFRLDMLSNITFAFSLVFLISIPKGFI-----DPAIAGLAVTYGL 1193 (1495)
Q Consensus 1119 IRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~gl~l~~~~ 1193 (1495)
||+|+++++|.+++.+..|.+.+..+.....++|+..++++++.+++.+.+.+.+.. .+.+ .++.+|++++|+.
T Consensus 1102 Iraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~g~~~~~~~ 1180 (1495)
T PLN03232 1102 IRAYKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGVMIWLTATFAVLR-NGNAENQAGFASTMGLLLSYTL 1180 (1495)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cccccccccchHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988876555544443322 2222 2567889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCCCCCccccCCCCCCCCCcceEEEeeeeEEeCCCCCcceeeeeEEee
Q 000452 1194 TLNNLQAMLIWLACQMENKIISVERIFQYTCIPSEPPLEIEESRPNHSWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFP 1273 (1495)
Q Consensus 1194 ~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nv~~~Y~~~~~~vL~~Is~~I~ 1273 (1495)
.+...+.++++.+.++|+.++|+||+.+|.+.|+|++...+...+++.||..|.|+|+||+|+|+++.++||+|+||+|+
T Consensus 1181 ~~~~~l~~l~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~~~~vL~~isl~I~ 1260 (1495)
T PLN03232 1181 NITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPGLPPVLHGLSFFVS 1260 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCCCCcccccceEEEc
Confidence 99999999999999999999999999999999888654333344667899999999999999999887889999999999
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccEEEcccCcCCCCcHHHhcCCCCCCCHHH
Q 000452 1274 GEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQ 1353 (1495)
Q Consensus 1274 ~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~isiIpQdp~LF~GTIR~NLdp~~~~sd~e 1353 (1495)
||||||||||||||||||+++|+|+++|++|+|.|||+||++++++++|++|++|||||+||+||||+||||+++++|+|
T Consensus 1261 ~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~~sdee 1340 (1495)
T PLN03232 1261 PSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDAD 1340 (1495)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcCC
Q 000452 1354 IWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSD 1433 (1495)
Q Consensus 1354 i~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~~ 1433 (1495)
+|+||++|+++++|+++|+||||+|+|+|.|||||||||+||||||||+|+|||||||||+||++||+.||++|++.+++
T Consensus 1341 i~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~ 1420 (1495)
T PLN03232 1341 LWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKS 1420 (1495)
T ss_pred HHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEecCchhhhccCEEEEEeCcEEEEecChhHHhhcCCChHHHHHHHHhhc
Q 000452 1434 CTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSFSQLVAEYTQR 1487 (1495)
Q Consensus 1434 ~TVI~IAHRl~ti~~~DrIlVL~~G~ivE~gsp~~Ll~~~~s~f~~lv~~~~~~ 1487 (1495)
||||+||||++|+++||||+|||+|+|+|+|+|+||+++++|.|++|+++.+..
T Consensus 1421 ~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~eLl~~~~~~f~~l~~~~~~~ 1474 (1495)
T PLN03232 1421 CTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFRMVHSTGPA 1474 (1495)
T ss_pred CEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhChh
Confidence 999999999999999999999999999999999999998778999999987753
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-208 Score=2117.20 Aligned_cols=1358 Identities=33% Similarity=0.572 Sum_probs=1150.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHhhhhhhhhcccc-ccchhhhHHHHHHHHHHHH
Q 000452 99 LFDFGVRTLGWGAICVYLRTVFLNLRQPKLPMLLKIWWGFYVFISCYCLIVDIVLYQKQV-NLPIQYLVSDVVSVITGLF 177 (1495)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 177 (1495)
...+++..++|+++.+....++.++.+ .+..+.+||++..++.+..+++.......+. ...........+.+.+.++
T Consensus 101 ~~~~~~~~~~~~~~~~l~~~e~~~~~~--~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (1522)
T TIGR00957 101 LVSPTLLGITMLLATFLIQLERRKGVQ--SSGIMLTFWLVALVCALAILRSKILLALKEDAIVDPFRDTTFYIYFALVLS 178 (1522)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhcccC--CCcchhHHHHHHHHHHHHHHHHHHHHhhcccccccceehhhHHHHHHHHHH
Confidence 334456666776555544455544443 4678999998888776666654431100000 0000001111111111111
Q ss_pred HHHHhhcccccCccccccccCCCcCCCCCCcCccccccCCCCCCCCCCcccchhHHHHHHhHHHHHHccccCCCCCCCCC
Q 000452 178 PCFVGFMSKIEGEDTLILQEPLLKVDSGESEGTVASIKSRGADTVTPYSNAGLFSVLTYTWINSLIALGNKKTLDLEDVP 257 (1495)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~~~s~~~f~W~~pl~~~g~~~~L~~~Dl~ 257 (1495)
+++.. .. . + ..|++.++. .....+||++||++||++|||+||++++||+++|+.+|||
T Consensus 179 ~~~~~--~~--~----~-~~~~~~~~~-------------~~~~~~~e~~a~~~s~~~f~W~~pl~~~g~~~~L~~~dl~ 236 (1522)
T TIGR00957 179 QLVLS--CF--S----D-KSPLFSETN-------------HDPNPCPESSASFLSRITFWWITGMAVYGYRQPLEESDLW 236 (1522)
T ss_pred HHHHH--hh--c----C-CCCcccccc-------------ccCCCCCcccCCHHHHHHHHHhHHHHHHHhcCCCChhhcc
Confidence 11111 00 0 0 123332101 1124589999999999999999999999999999999999
Q ss_pred CCCCCCchHHHHHHHHHHHHhhhccC-------------------------------------CCCChhHHHHHHHHHHH
Q 000452 258 QLDSGNSVVGVFATFKNKLETEAGLG-------------------------------------SGLTTLKLIKAMFRSVW 300 (1495)
Q Consensus 258 ~l~~~~~~~~~~~~f~~~~~~~~~~~-------------------------------------~~~~~~~l~~al~~~~~ 300 (1495)
+++++++++.++++|++.|+++..+. ++.++++|+++++++||
T Consensus 237 ~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~l~~~~~ 316 (1522)
T TIGR00957 237 SLNKEDTSEMVVPVLVENWKKECKKTRKQPVSAVYGKKDPSKPKGSSQLDANEEVEALIVKSPHKPRKPSLFKVLYKTFG 316 (1522)
T ss_pred CCCHhHhHHHHHHHHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccCCccHHHHHHHHHh
Confidence 99999999999999999998752100 11234789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 301 KDVLLTALVAIVCTLATYVGPYLIDTLVQYLSGKRDFENEGYALVSAFCVAKLVECLCQRFFVFRLEQLGIRLRAALIAM 380 (1495)
Q Consensus 301 ~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~g~rir~~L~~~ 380 (1495)
+.++..++++++..++.+++|++++.+++++.++......||.++++++++.++.+++.++|.|...++++++|++|+..
T Consensus 317 ~~~l~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~ 396 (1522)
T TIGR00957 317 PYFLMSFCFKAIHDLMMFIGPQILSLLIRFVNDPMAPDWQGYFYTGLLFVCACLQTLILHQYFHICFVSGMRIKTAVMGA 396 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999997654334568999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCcchhcCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 381 IYNKGLKLSSQAKQGNTSGEIINFMTVDAERVAELSWYIHDPWLFLFEVALSFLILYKSLGIASVAAFFGTVIFMLVNVP 460 (1495)
Q Consensus 381 iy~K~L~ls~~~~~~~~~G~i~nl~s~D~~~i~~~~~~~~~~w~~pl~i~~~~~lL~~~lG~~~l~gl~~~i~~~~~~~~ 460 (1495)
||+|+|+++...++++++|+++|+|++|++++.++..++|.+|..|++++++++++|..+|+++++|++++++++|++..
T Consensus 397 iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~~~~~~~~~~~~i~~~~~ll~~~~g~~~l~~l~~~~~~~~~~~~ 476 (1522)
T TIGR00957 397 VYRKALVITNSARKSSTVGEIVNLMSVDAQRFMDLATYINMIWSAPLQVILALYFLWLNLGPSVLAGVAVMVLMVPLNAV 476 (1522)
T ss_pred HHHHHHhCChhhcCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 461 LSTVQEKFQNELMKSKDERMKATSEILRNMRILKLQGWELKFLSKTIDLRKSESGWLKRCLYTSSITSFVFWCAPTFVSV 540 (1495)
Q Consensus 461 ~~~~~~~~~~~~m~~~D~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~~~~~p~~v~~ 540 (1495)
+++..+++++++|+.+|+|++.++|+++|||.||+|+||+.|.+++++.|++|++..++..+......+.++..|.++.+
T Consensus 477 ~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (1522)
T TIGR00957 477 MAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAVGTFTWVCTPFLVAL 556 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988888877777789999999
Q ss_pred HHHHHHHHh--cCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCCC-CCCccc
Q 000452 541 ITFGTCILL--KVPLESGKVLSAIATFRLLQILIYKLPAIISMTIQTKVSLQRIASFFCLDELQPDLVEKQPR-GSSETA 617 (1495)
Q Consensus 541 ~~f~~~~~~--~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~~~~~~~-~~~~~~ 617 (1495)
++|++|.+. ++.|+++.+|++++++++++.|+..+|..+..+.++++|++||++||+.+|.++........ ......
T Consensus 557 ~~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~ 636 (1522)
T TIGR00957 557 ITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSIERRTIKPGEGNS 636 (1522)
T ss_pred HHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccccccccCCCCCCc
Confidence 999998876 46799999999999999999999999999999999999999999999877654322111111 111236
Q ss_pred EEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCeEEEEccCCcccCccH
Q 000452 618 IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKI 697 (1495)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~~ayv~Q~~~l~~~ti 697 (1495)
++++|++|+|+. +++++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|+++||||+||++++||
T Consensus 637 i~~~~~~~~~~~-~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~~~l~~~Ti 715 (1522)
T TIGR00957 637 ITVHNATFTWAR-DLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWIQNDSL 715 (1522)
T ss_pred EEEEEeEEEcCC-CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEEEEEcCCccccCCcH
Confidence 999999999963 2357999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHHHHHhccCCCEeEecCcCCccCHHH
Q 000452 698 EDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHT 777 (1495)
Q Consensus 698 ~enI~fg~~~~~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~ 777 (1495)
+|||.||.++++++|++++++|++.+|++.+|+||+|.+|++|.+|||||||||+||||+|++||||||||||||||+++
T Consensus 716 ~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~ 795 (1522)
T TIGR00957 716 RENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHV 795 (1522)
T ss_pred HHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH--HHhCCCEEEEEecCCCccccCCEEEEEeCCEEEEecChHHHHhcCCchhHHHHHHHhhhcccccccC-
Q 000452 778 GSHLFKEVLL--GLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVINSGTDFMELVDAHKQALSTLDSIEG- 854 (1495)
Q Consensus 778 ~~~i~~~~~~--~~~~~~tvIlvTH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~- 854 (1495)
++++++.++. +.++++|+|+|||+++.++.||+|++|++|++++.|+++++.++...+.++...+..........+.
T Consensus 796 ~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~ 875 (1522)
T TIGR00957 796 GKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRDGAFAEFLRTYAPDEQQGHLEDSW 875 (1522)
T ss_pred HHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHhcchhHHHHHHhhccccccccccccc
Confidence 9999998873 4567899999999999999999999999999999999999998777777766533221100000000
Q ss_pred CCC--CCCCCC-C-CC------CCCCCccccc---ccccccc--c--cccc-ccccccchhhhhhHHHHHhhcCchHHHH
Q 000452 855 RPL--SEKGSA-N-GE------NDGTSATDGV---VKEVENK--E--VQND-REDKVAEPQRQLVQEEEREKGKVEFSVY 916 (1495)
Q Consensus 855 ~~~--~~~~~~-~-~~------~~~~~~~~~~---~~~~~~~--~--~~~~-~~~~~~~~~~~~~~~e~~~~g~v~~~~y 916 (1495)
.+. .+..+. . .+ .......... ....... . .... +..+..+...+..++|+++.|.+++++|
T Consensus 876 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y 955 (1522)
T TIGR00957 876 TALVSGEGKEAKLIENGMLVTDVVGKQLQRQLSASSSDSGDQSRHHGSSAELQKAEAKEETWKLMEADKAQTGQVELSVY 955 (1522)
T ss_pred cccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccchhhhHHHHHHhcCcccHHHH
Confidence 000 000000 0 00 0000000000 0000000 0 0000 0000011123456778888999999999
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhcccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 917 WKYITAAYGGVLVPFILLAQTLFQILQIASNYWIAWATPASKDIKPRVTGSMLLIVFVALAFGSSFCILARSTLLATAGY 996 (1495)
Q Consensus 917 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~ 996 (1495)
+.|+++.+. ..+++++++.++.+++.+++++|+++|++......+......|+++|++++++..++.+++.++....+.
T Consensus 956 ~~Y~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~~~~~iy~~l~i~~~~~~~~~~~~~~~~~~ 1034 (1522)
T TIGR00957 956 WDYMKAIGL-FITFLSIFLFVCNHVSALASNYWLSLWTDDPMVNGTQNNTSLRLSVYGALGILQGFAVFGYSMAVSIGGI 1034 (1522)
T ss_pred HHHHHHcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998754 4444455556777888899999999988532111122234567789999999999999999888899999
Q ss_pred HHHHHHHHHHHHHHccCCcccccccccccchhHHhcchhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 997 KTATLLFNKMHYCIFRAPMSFFDATPSGRIINRASTDQSAVDLSIPALIGSFAFSIIRVLGVIGVMSLVAWQVFIVFIPV 1076 (1495)
Q Consensus 997 ~~s~~l~~~ll~~ll~ap~~ffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~ip~ 1076 (1495)
++++++|++++++++++|++|||++|+|+|+|||++|++.+|..+|..+..++..++.+++.++++++.+|+++++++|+
T Consensus 1035 ~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~~~~~~ 1114 (1522)
T TIGR00957 1035 QASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVIIPPL 1114 (1522)
T ss_pred HHHHHHHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888888898
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcchHHHHhhccHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 000452 1077 IATCIWYQQYYISSARELSRLVGVCKAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGYSRPTFHVAAAMEWLGFR 1156 (1495)
Q Consensus 1077 ~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~r 1156 (1495)
++++++++++|.+++|+++|++..+++|+++|+.|+++|+.|||+|++|++|.+++.+..|.++++.+.....++|+..+
T Consensus 1115 ~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1194 (1522)
T TIGR00957 1115 GLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVR 1194 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCCCCCccccC
Q 000452 1157 LDMLSNITFAFSLVFLISIPKGFIDPAIAGLAVTYGLTLNNLQAMLIWLACQMENKIISVERIFQYTCIPSEPPLEIEES 1236 (1495)
Q Consensus 1157 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~gl~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~ 1236 (1495)
+++++.+++.++..+.+ ...+.+++|.+|++++|++.+...+.++++.+.++|+.++|+||+.+|.+.|+|++...+..
T Consensus 1195 ~~~~~~~~~~~~~~~~v-~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~ 1273 (1522)
T TIGR00957 1195 LECVGNCIVLFAALFAV-ISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQET 1273 (1522)
T ss_pred HHHHHHHHHHHHHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCC
Confidence 99998765555444433 23567899999999999999999999999999999999999999999999888765433444
Q ss_pred CCCCCCCCcceEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCC
Q 000452 1237 RPNHSWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLI 1316 (1495)
Q Consensus 1237 ~~~~~wp~~g~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i 1316 (1495)
.+++.||.+|.|+|+||+|+|+++.++||+||||+|+||||||||||||||||||+++|+|+++|++|+|.|||+||+++
T Consensus 1274 ~~~~~wp~~g~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i 1353 (1522)
T TIGR00957 1274 APPSGWPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKI 1353 (1522)
T ss_pred CCCCCCCCCCcEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEcccc
Confidence 56678999999999999999998877899999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHhcccEEEcccCcCCCCcHHHhcCCCCCCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHH
Q 000452 1317 GLHDLRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLG 1396 (1495)
Q Consensus 1317 ~l~~LR~~isiIpQdp~LF~GTIR~NLdp~~~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LA 1396 (1495)
++++||++|++|||||+||+||||+||||+++++|+|||+||++|+++++|.++|+||||+|+|+|.|||||||||+|||
T Consensus 1354 ~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LA 1433 (1522)
T TIGR00957 1354 GLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLA 1433 (1522)
T ss_pred CHHHHHhcCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhccCEEEEEeCcEEEEecChhHHhhcCCCh
Q 000452 1397 RVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSS 1476 (1495)
Q Consensus 1397 RALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~ivE~gsp~~Ll~~~~s~ 1476 (1495)
|||||+|+|||||||||+||.+||+.||++|++.|++||||+||||++|+++||||+|||+|+|+|+|+|++|+++ +|.
T Consensus 1434 RALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~~eLl~~-~~~ 1512 (1522)
T TIGR00957 1434 RALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQ-RGI 1512 (1522)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CCH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999986 699
Q ss_pred HHHHHHHH
Q 000452 1477 FSQLVAEY 1484 (1495)
Q Consensus 1477 f~~lv~~~ 1484 (1495)
|++|+++.
T Consensus 1513 f~~l~~~~ 1520 (1522)
T TIGR00957 1513 FYSMAKDA 1520 (1522)
T ss_pred HHHHHHHc
Confidence 99999984
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-200 Score=2033.82 Aligned_cols=1253 Identities=27% Similarity=0.465 Sum_probs=1095.0
Q ss_pred CCCCcccchhHHHHHHhHHHHHHccccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHHHH
Q 000452 222 VTPYSNAGLFSVLTYTWINSLIALGNKKTLDLEDVPQLDSGNSVVGVFATFKNKLETEAGLGSGLTTLKLIKAMFRSVWK 301 (1495)
Q Consensus 222 ~~p~~~a~~~s~~~f~W~~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~al~~~~~~ 301 (1495)
.+||++||+|||++|||++|++++||+++|+.+|||+|+++++++.++++|++.|+++.. ++.++++|+++++++|++
T Consensus 3 ~~pe~~a~~~s~~~F~W~~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~~--~~~~~~~L~~~l~~~~~~ 80 (1490)
T TIGR01271 3 RSPVEKANFLSKLFFWWTRPILRKGYRQKLELSDIYQIPSFDSADNLSERLEREWDRELA--SAKKNPKLLNALRRCFFW 80 (1490)
T ss_pred CCccccCCHHHHHHHHHHHHHHHHHhcCCCChhhccCCChHHhHHHHHHHHHHHHHHHHh--ccCCCChHHHHHHHHHHH
Confidence 468999999999999999999999999999999999999999999999999999987641 123467999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 302 DVLLTALVAIVCTLATYVGPYLIDTLVQYLSGKRDF-ENEGYALVSAFCVAKLVECLCQRFFVFRLEQLGIRLRAALIAM 380 (1495)
Q Consensus 302 ~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~-~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~g~rir~~L~~~ 380 (1495)
.+++.++++++.+++.+++|++++.+++|+++.+.. ...+|.++++++++.++..++.++++|...++++++|++|+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~L~~~ 160 (1490)
T TIGR01271 81 RFVFYGILLYFGEATKAVQPLLLGRIIASYDPFNAPEREIAYYLALGLCLLFIVRTLLLHPAIFGLHHLGMQMRIALFSL 160 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999543322 2468899999999999999999999999999999999999999
Q ss_pred HHHHHhcCCcchhcCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 381 IYNKGLKLSSQAKQGNTSGEIINFMTVDAERVAELSWYIHDPWLFLFEVALSFLILYKSLGIASVAAFFGTVIFMLVNVP 460 (1495)
Q Consensus 381 iy~K~L~ls~~~~~~~~~G~i~nl~s~D~~~i~~~~~~~~~~w~~pl~i~~~~~lL~~~lG~~~l~gl~~~i~~~~~~~~ 460 (1495)
||+|+|+++....++.++|+++|+|++|++++.+++.++|.+|..|+++++++++||.++|+++++|++++++++|++.+
T Consensus 161 iy~K~L~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~~~~~~~~pi~i~~~~~lL~~~~G~~~l~~l~v~~~~~~~~~~ 240 (1490)
T TIGR01271 161 IYKKTLKLSSRVLDKISTGQLVSLLSNNLNKFDEGLALAHFVWIAPLQVILLMGLIWELLEVNGFCGLGFLILLALFQAC 240 (1490)
T ss_pred HHHHHHhCCHHHhcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 461 LSTVQEKFQNELMKSKDERMKATSEILRNMRILKLQGWELKFLSKTIDLRKSESGWLKRCLYTSSITSFVFWCAPTFVSV 540 (1495)
Q Consensus 461 ~~~~~~~~~~~~m~~~D~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~~~~~p~~v~~ 540 (1495)
+++...++++++|+++|+|++.++|+|+|||+||+|+||+.|.+++++.|++|++.+++..+......++++..|.++++
T Consensus 241 ~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (1490)
T TIGR01271 241 LGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLRYFYSSAFFFSGFFVVF 320 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888888888899999999
Q ss_pred HHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCCCCCCcccEE
Q 000452 541 ITFGTCILLKVPLESGKVLSAIATFRLLQILIY-KLPAIISMTIQTKVSLQRIASFFCLDELQPDLVEKQPRGSSETAIE 619 (1495)
Q Consensus 541 ~~f~~~~~~~~~L~~~~vft~lalf~~l~~pl~-~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~~~~~~~~~~~~~i~ 619 (1495)
++|++|.+.++ ++++++||++++|++++.|+. .+|..+..+.++++|++||++||..+|.++.... .....++
T Consensus 321 ~~f~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~~~~~-----~~~~~i~ 394 (1490)
T TIGR01271 321 LSVVPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKTLEYN-----LTTTEVE 394 (1490)
T ss_pred HHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccc-----CCCCceE
Confidence 99999988754 789999999999999999985 7999999999999999999999998776432111 1123599
Q ss_pred EEeeEEEecCC-------------------------------CCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhC
Q 000452 620 IADGNFSWDIS-------------------------------SHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILG 668 (1495)
Q Consensus 620 ~~~~~~~~~~~-------------------------------~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG 668 (1495)
++|++|+|+.. ..+++|+|+||+|++|++++|+|||||||||||++|+|
T Consensus 395 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G 474 (1490)
T TIGR01271 395 MVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMG 474 (1490)
T ss_pred EecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 99999999531 01468999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEcCeEEEEccCCcccCccHHHHHhcCCCCCHHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHH
Q 000452 669 EVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQK 748 (1495)
Q Consensus 669 ~~~~~~G~v~~~g~~ayv~Q~~~l~~~ti~enI~fg~~~~~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 748 (1495)
+++|++|+|.++|.++||+|+||++++||+|||+||.++++++|++++++|+|++|++.+|.||+|.+|++|.+||||||
T Consensus 475 ~~~~~~G~i~~~g~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqk 554 (1490)
T TIGR01271 475 ELEPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQR 554 (1490)
T ss_pred CCCCCCceEEECCEEEEEeCCCccCCccHHHHHHhccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEecCCCccccCCEEEEEeCCEEEEecChHHH
Q 000452 749 QRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDV 828 (1495)
Q Consensus 749 qRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~~~d~i~~l~~G~i~~~g~~~~l 828 (1495)
|||+||||+|++|+||||||||||||++++++++++|+.+.++++|+|+|||+++.++.||+|++|++|++++.|+++++
T Consensus 555 qRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~~l 634 (1490)
T TIGR01271 555 ARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSEL 634 (1490)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 99999999999999999999999999999999999888877789999999999999989999999999999999999999
Q ss_pred HhcCCchhHHHHHHHhhhc---c--------------cc--c-----ccC------CCCCC--CCC--------------
Q 000452 829 INSGTDFMELVDAHKQALS---T--------------LD--S-----IEG------RPLSE--KGS-------------- 862 (1495)
Q Consensus 829 ~~~~~~~~~l~~~~~~~~~---~--------------~~--~-----~~~------~~~~~--~~~-------------- 862 (1495)
.+.+..+.+.........+ . .+ . .+. .+..+ +..
T Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (1490)
T TIGR01271 635 QAKRPDFSSLLLGLEAFDNFSAERRNSILTETLRRVSIDGDSTVFSGPETIKQSFKQPPPEFAEKRKQSIILNPIASARK 714 (1490)
T ss_pred HhcChHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 8765556555431110000 0 00 0 000 00000 000
Q ss_pred ---------C---CCCCCCCCccc---------------------c----------c--------ccc--c-ccc-c---
Q 000452 863 ---------A---NGENDGTSATD---------------------G----------V--------VKE--V-ENK-E--- 884 (1495)
Q Consensus 863 ---------~---~~~~~~~~~~~---------------------~----------~--------~~~--~-~~~-~--- 884 (1495)
. ........... . . ... . ... .
T Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 (1490)
T TIGR01271 715 FSFVQMGPQKAQATTIEDAVREPSERKFSLVPEDEQGEESLPRGNQYHHGLQHQAQRRQSVLQLMTHSNRGENRREQLQT 794 (1490)
T ss_pred cccccccccccccccccchhcccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccc
Confidence 0 00000000000 0 0 000 0 000 0
Q ss_pred ---------c-----cc--------cccc----c----ccchhhhhhHHHHHhhcCchHHHHHHHHHHhhhhhHHHHHHH
Q 000452 885 ---------V-----QN--------DRED----K----VAEPQRQLVQEEEREKGKVEFSVYWKYITAAYGGVLVPFILL 934 (1495)
Q Consensus 885 ---------~-----~~--------~~~~----~----~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~~~~~~~~~~~~ 934 (1495)
. .. ..+. . .+.....+.++|+++.|.++|++|+.|+++.+++.++.++++
T Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vY~~Y~~~~g~~~~~~~~~~ 874 (1490)
T TIGR01271 795 SFRKKSSITQQNELASELDIYSRRLSKDSVYEISEEINEEDLKECFADERENVFETTTWNTYLRYITTNRNLVFVLIFCL 874 (1490)
T ss_pred ccccccccccccccccccccccccccccccccccccchhhhhhhhhhHHHHhhcCcccHHHHHHHHHhcCcHHHHHHHHH
Confidence 0 00 0000 0 000112346678889999999999999998866555555566
Q ss_pred HHHHHHHHHHhhHHHHHhhcccC------CCC---C-----CC--c-chhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 935 AQTLFQILQIASNYWIAWATPAS------KDI---K-----PR--V-TGSML-LIVFVALAFGSSFCILARSTLLATAGY 996 (1495)
Q Consensus 935 ~~~~~~~~~~~~~~wl~~~~~~~------~~~---~-----~~--~-~~~~~-~~~y~~l~~~~~~~~~~~~~~~~~~~~ 996 (1495)
+.++.+++..++++|+++|.... ... . |. . ...+| +++|++++++..++.+++.+++...+.
T Consensus 875 ~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 954 (1490)
T TIGR01271 875 VIFLAEVAASLLGLWLITDNPSAPNYVDQQHANASSPDVQKPVIITPTSAYYIFYIYVGTADSVLALGFFRGLPLVHTLL 954 (1490)
T ss_pred HHHHHHHHHHHhhHHHHhcccccccccccccccCCCccccccccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66788999999999998765311 000 0 00 0 11223 566666666677788889999999999
Q ss_pred HHHHHHHHHHHHHHccCCcccccccccccchhHHhcchhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 997 KTATLLFNKMHYCIFRAPMSFFDATPSGRIINRASTDQSAVDLSIPALIGSFAFSIIRVLGVIGVMSLVAWQVFIVFIPV 1076 (1495)
Q Consensus 997 ~~s~~l~~~ll~~ll~ap~~ffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~ip~ 1076 (1495)
++++++|.+++++++++|++|||++|+|+|+|||++|++.+|..+|..+..++..++.+++.++++++.+|+++++++|+
T Consensus 955 ~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~p~l~l~~~~l 1034 (1490)
T TIGR01271 955 TVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIFIAAIPV 1034 (1490)
T ss_pred HHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcchHHHHhhccHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 000452 1077 IATCIWYQQYYISSARELSRLVGVCKAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGYSRPTFHVAAAMEWLGFR 1156 (1495)
Q Consensus 1077 ~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~r 1156 (1495)
++++++++++|.+++|+++|++..+++|+++|+.|+++|+.|||+|+++++|.+++.+..|.+++.++.....++|+..+
T Consensus 1035 ~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~ 1114 (1490)
T TIGR01271 1035 AVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLSTLRWFQMR 1114 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCCCCCccc--
Q 000452 1157 LDMLSNITFAFSLVFLISIPKGFIDPAIAGLAVTYGLTLNNLQAMLIWLACQMENKIISVERIFQYTCIPSEPPLEIE-- 1234 (1495)
Q Consensus 1157 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~gl~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~E~~~~~~-- 1234 (1495)
+++++.+.+..++++.+. ...+++|.+|++++|++.+...+.++++.+.++|+.+.|+||+.+|.+.|+|++...+
T Consensus 1115 ~~~i~~~~~~~~~~l~~~--~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e~~~~~~~~ 1192 (1490)
T TIGR01271 1115 IDIIFVFFFIAVTFIAIG--TNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRPSGGG 1192 (1490)
T ss_pred HHHHHHHHHHHHHHHHHH--HhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccc
Confidence 999877654443333222 2235788899999999999999999999999999999999999999998887542211
Q ss_pred ------------cCCCCCCCCCcceEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCC
Q 000452 1235 ------------ESRPNHSWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPA 1302 (1495)
Q Consensus 1235 ------------~~~~~~~wp~~g~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~ 1302 (1495)
...+|+.||..|.|+|+||+|+|+++.++||+||||+|+||||||||||||||||||+++|+|+++ +
T Consensus 1193 ~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~ 1271 (1490)
T TIGR01271 1193 GKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-T 1271 (1490)
T ss_pred cccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-C
Confidence 123456799999999999999999888899999999999999999999999999999999999998 7
Q ss_pred ccEEEEcCEeCCCCCHHHHhcccEEEcccCcCCCCcHHHhcCCCCCCCHHHHHHHHHHcCCcHHHHhccCCcccccccCC
Q 000452 1303 AGQILIDGIDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENG 1382 (1495)
Q Consensus 1303 ~G~I~IDG~dI~~i~l~~LR~~isiIpQdp~LF~GTIR~NLdp~~~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G 1382 (1495)
+|+|.|||+||++++++++|++|+||||||+||+||||+||||+++++|+++|+||++|+++++|.++|+||||+|+|+|
T Consensus 1272 ~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G 1351 (1490)
T TIGR01271 1272 EGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGG 1351 (1490)
T ss_pred CcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhccCEEEEEeCcEEEE
Q 000452 1383 ENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 1462 (1495)
Q Consensus 1383 ~nLS~GQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~ivE 1462 (1495)
.||||||||||||||||||+|+|||||||||+||.+||+.||++|++.|++||||+||||++|+.+||||+|||+|+|+|
T Consensus 1352 ~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~~DrIlvL~~G~ivE 1431 (1490)
T TIGR01271 1352 YVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLECQQFLVIEGSSVKQ 1431 (1490)
T ss_pred CcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecChhHHhhcCCChHHHHHHHHhh
Q 000452 1463 YDSPRKLLENKSSSFSQLVAEYTQ 1486 (1495)
Q Consensus 1463 ~gsp~~Ll~~~~s~f~~lv~~~~~ 1486 (1495)
+|+|++|++ ++|.|++|+++...
T Consensus 1432 ~g~p~~Ll~-~~~~f~~l~~~~~~ 1454 (1490)
T TIGR01271 1432 YDSIQKLLN-ETSLFKQAMSAADR 1454 (1490)
T ss_pred eCCHHHHHc-CCcHHHHHHHHhCh
Confidence 999999997 57999999998875
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-190 Score=1938.96 Aligned_cols=1258 Identities=30% Similarity=0.484 Sum_probs=1086.5
Q ss_pred CCCCCCcccchhHHHHHHhHHHHHHccccCCCCCCCCCCCCCCCchHHHHHHHHHH----------HHhhhcc-------
Q 000452 220 DTVTPYSNAGLFSVLTYTWINSLIALGNKKTLDLEDVPQLDSGNSVVGVFATFKNK----------LETEAGL------- 282 (1495)
Q Consensus 220 ~~~~p~~~a~~~s~~~f~W~~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~f~~~----------~~~~~~~------- 282 (1495)
..+.||++||||.++++.|++|++.+..|..|+.+|+|+...+.++-++.-++.+. |+-..|.
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (1560)
T PTZ00243 57 YTPVPEETASWFQRYYYGWVYEYVLLASKEQLTEEDLPPPTRDVRAHECGLRLSRAVQAAMYERNAWNCMVGAEVVSTLD 136 (1560)
T ss_pred CCCCccchhhHHHHHHHHHHHHHHHHHHHhhcccccCCCCcchhhHHHHhHHHHHHHHHHHHhhcccccccccEEEeecc
Confidence 45679999999999999999999999999999999999999999886665554443 3210000
Q ss_pred --------------------------------------------------------------------------------
Q 000452 283 -------------------------------------------------------------------------------- 282 (1495)
Q Consensus 283 -------------------------------------------------------------------------------- 282 (1495)
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (1560)
T PTZ00243 137 ASSRGVLRWVGVPQQGGYTRMMAGVEWSVPPALRTAARSDDSGASPFFNGVAHGEHLFTPEQSNMSTLEEPTDVRLYLSS 216 (1560)
T ss_pred ccccceEEeecccccCCCcceeeeeeeccCchhhhcccCCCCCCccccccccccccccCcccCCceeeeeeheeeEeecc
Confidence
Q ss_pred ---------CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcchhHHHHHHHHHHHHH
Q 000452 283 ---------GSGLTTLKLIKAMFRSVWKDVLLTALVAIVCTLATYVGPYLIDTLVQYLSGKRDFENEGYALVSAFCVAKL 353 (1495)
Q Consensus 283 ---------~~~~~~~~l~~al~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~ 353 (1495)
...++..+|+++++++||+.+++.++++++.+++.+++|++++.+++++++++.....|+.++++++++.+
T Consensus 217 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~l~~P~ll~~~v~~l~~~~~~~~~g~~l~~~l~~~~~ 296 (1560)
T PTZ00243 217 TGSVVRPGPPPTPKRLSLLRTLFAALPYYVWWQIPFKLLSDVCTLTLPVLLKYFVKFLDADNATWGRGLGLVLTLFLTQL 296 (1560)
T ss_pred cccccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHH
Confidence 00123458999999999999999999999999999999999999999997654333457888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhc--CCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 000452 354 VECLCQRFFVFRLEQLGIRLRAALIAMIYNKGLKLSSQAKQ--GNTSGEIINFMTVDAERVAELSWYIHDPWLFLFEVAL 431 (1495)
Q Consensus 354 ~~~~~~~~~~~~~~~~g~rir~~L~~~iy~K~L~ls~~~~~--~~~~G~i~nl~s~D~~~i~~~~~~~~~~w~~pl~i~~ 431 (1495)
+.+++.+++.|...+.++++|++|.+.+|+|+++++..+.. +.++|+++|+|++|++++.+++.++|.+|..|+++++
T Consensus 297 ~~~~~~~~~~~~~~r~~~~~r~~L~~~if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~~~~~l~~~Pl~li~ 376 (1560)
T PTZ00243 297 IQSVCLHRFYYISIRCGLQYRSALNALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQYCMYLWSSPMVLLL 376 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987665 5689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHH
Q 000452 432 SFLILYKSLGIASVAAFFGTVIFMLVNVPLSTVQEKFQNELMKSKDERMKATSEILRNMRILKLQGWELKFLSKTIDLRK 511 (1495)
Q Consensus 432 ~~~lL~~~lG~~~l~gl~~~i~~~~~~~~~~~~~~~~~~~~m~~~D~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~ 511 (1495)
++++||.++|+++++|++++++++|++.++++.+.++++++|+++|+|++.++|+++|||+||+||||+.|.+++++.|+
T Consensus 377 ~~~lL~~~lG~~al~gv~vl~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~ 456 (1560)
T PTZ00243 377 SILLLSRLVGWCALMAVAVLLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRA 456 (1560)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 512 SESGWLKRCLYTSSITSFVFWCAPTFVSVITFGTCILLKVPLESGKVLSAIATFRLLQILIYKLPAIISMTIQTKVSLQR 591 (1495)
Q Consensus 512 ~E~~~l~~~~~~~~~~~~~~~~~p~~v~~~~f~~~~~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vs~~R 591 (1495)
+|++.+++..+..++..++.+.+|.++.+++|++|++.|++||++++|+++++|++++.|+.++|..++.+.++++|++|
T Consensus 457 ~El~~l~~~~~~~~~~~~~~~~~p~l~~~~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~R 536 (1560)
T PTZ00243 457 RELRYLRDVQLARVATSFVNNATPTLMIAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKR 536 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999989999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCcccc----c-----------------------------CCC-------------------------CCC
Q 000452 592 IASFFCLDELQPDLV----E-----------------------------KQP-------------------------RGS 613 (1495)
Q Consensus 592 I~~fL~~~e~~~~~~----~-----------------------------~~~-------------------------~~~ 613 (1495)
|++||..+|...... + +.| ...
T Consensus 537 I~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (1560)
T PTZ00243 537 ISTFLECDNATCSTVQDMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRH 616 (1560)
T ss_pred HHHHHcCccccccccccchhhcccccccccccccccccccccccccccccccccccccccccccchhhcccccccccccc
Confidence 999998776311000 0 000 000
Q ss_pred CcccEEEEeeEEEecCC-------------------------------------CCCCccccceEEeeCCcEEEEEecCC
Q 000452 614 SETAIEIADGNFSWDIS-------------------------------------SHNPTLKDINLKVFHGMRVAVCGTVG 656 (1495)
Q Consensus 614 ~~~~i~~~~~~~~~~~~-------------------------------------~~~~~L~~i~l~i~~G~~~~i~G~~G 656 (1495)
....+.++|++++|+.+ +++++|+|+||+|++|++++|+||||
T Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nG 696 (1560)
T PTZ00243 617 PSPSVVVEDTDYGSPSSASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATG 696 (1560)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCC
Confidence 01235666666654310 13468999999999999999999999
Q ss_pred ccHHHHHHHHhCCCCCCCcEEEEcCeEEEEccCCcccCccHHHHHhcCCCCCHHHHHHHHHHhCcHHHHhhcCCCCcccc
Q 000452 657 SGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQTVV 736 (1495)
Q Consensus 657 sGKSTLl~~llG~~~~~~G~v~~~g~~ayv~Q~~~l~~~ti~enI~fg~~~~~~~~~~vl~~~~l~~dl~~l~~gd~t~i 736 (1495)
|||||||++|+|+++|++|+|.+++.++||||+||++++|++|||.|+.++++++|++++++|++++|++.+|+|++|.+
T Consensus 697 sGKSTLL~~i~G~~~~~~G~i~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i 776 (1560)
T PTZ00243 697 SGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEI 776 (1560)
T ss_pred CcHHHHHHHHhcCCCCCCcEEEECCeEEEEeCCCccCCCcHHHHHHcCChhhHHHHHHHHHHhhhHHHHHHhhccchHHh
Confidence 99999999999999999999999999999999999999999999999998888999999999999999999999999999
Q ss_pred cCCCCccchHHHHHHHHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEecCCCccccCCEEEEEeC
Q 000452 737 GERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKD 816 (1495)
Q Consensus 737 g~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~~~d~i~~l~~ 816 (1495)
|++|.+|||||||||+||||+|++|+|||||||||+||++++++++++++.+.++|+|+|+|||+++.++.||+|++|++
T Consensus 777 ~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~ 856 (1560)
T PTZ00243 777 GEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGD 856 (1560)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999999888777789999999999999989999999999
Q ss_pred CEEEEecChHHHHhcCCchhHHHHHHHhhhcccccccCCCCCCCCCCCCCCCCCCcccccccccccccc-cccccccccc
Q 000452 817 GKITQAGKYTDVINSGTDFMELVDAHKQALSTLDSIEGRPLSEKGSANGENDGTSATDGVVKEVENKEV-QNDREDKVAE 895 (1495)
Q Consensus 817 G~i~~~g~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 895 (1495)
|++.+.|+++++.+.+ .+.++........+.. +.....+.......+....... ......... ...+......
T Consensus 857 G~i~~~G~~~~l~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 930 (1560)
T PTZ00243 857 GRVEFSGSSADFMRTS-LYATLAAELKENKDSK---EGDADAEVAEVDAAPGGAVDHE--PPVAKQEGNAEGGDGAALDA 930 (1560)
T ss_pred CEEEEecCHHHHHhCh-HHHHHHHhhccccccc---cccccccccccccccccccccc--cccccccccccccccccccc
Confidence 9999999999998653 3554443211110000 0000000000000000000000 000000000 0000000111
Q ss_pred hhhhhhHHHHHhhcCchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhcccCCCCCCCcchhHHHHHHHH
Q 000452 896 PQRQLVQEEEREKGKVEFSVYWKYITAAYGGVLVPFILLAQTLFQILQIASNYWIAWATPASKDIKPRVTGSMLLIVFVA 975 (1495)
Q Consensus 896 ~~~~~~~~e~~~~g~v~~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~y~~ 975 (1495)
...++.++|+++.|.++|++|+.|++..++..++.+++++.++.+++..++++|+++|++.. ...+...|+.+|++
T Consensus 931 ~~~~l~~~e~~~~g~v~~~~y~~Y~~~~g~~~~~~~~l~~~~~~~~~~~~~~~wl~~w~~~~----~~~~~~~~l~~y~~ 1006 (1560)
T PTZ00243 931 AAGRLMTREEKASGSVPWSTYVAYLRFCGGLHAAGFVLATFAVTELVTVSSGVWLSMWSTRS----FKLSAATYLYVYLG 1006 (1560)
T ss_pred ccchhhhHHHHhcCcccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc----cCCCcccHHHHHHH
Confidence 22356677888899999999999999987666555555556677888899999999887521 12234567888998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccccccccccchhHHhcchhHHHhhhHHHHHHHHHHHHHH
Q 000452 976 LAFGSSFCILARSTLLATAGYKTATLLFNKMHYCIFRAPMSFFDATPSGRIINRASTDQSAVDLSIPALIGSFAFSIIRV 1055 (1495)
Q Consensus 976 l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~ll~ap~~ffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~ 1055 (1495)
+.++..++.+++.+.....+.++++.+|++++++++++|++|||++|+|+|+|||++|++.+|..++..+..++..++.+
T Consensus 1007 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~ 1086 (1560)
T PTZ00243 1007 IVLLGTFSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSI 1086 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcchHHHHhhccHHHHHHHHHHH
Q 000452 1056 LGVIGVMSLVAWQVFIVFIPVIATCIWYQQYYISSARELSRLVGVCKAPLIQHFAETVSGSTTIRSFDQESRFIDTNMEL 1135 (1495)
Q Consensus 1056 ~~~~~~~~~~~~~~~~v~ip~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~ 1135 (1495)
++.++++++.+|.++++++|++++++++.++|.+..|+++|+...+++|++++++|+++|+.|||+|++|+.|.+++.+.
T Consensus 1087 i~~li~~~~~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~ 1166 (1560)
T PTZ00243 1087 CSSILVTSASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRR 1166 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHH
Confidence 99999999999988888888888888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 1136 MDGYSRPTFHVAAAMEWLGFRLDMLSNITFAFSLVFLI---SIPKGFIDPAIAGLAVTYGLTLNNLQAMLIWLACQMENK 1212 (1495)
Q Consensus 1136 ~d~~~~~~~~~~~~~~wl~~rl~~l~~~~~~~~~~~~~---~~~~~~~~~~~~gl~l~~~~~l~~~~~~~~~~~~~le~~ 1212 (1495)
.|.+.+..+.....++|+..++++++.+++++++++.+ ....+.+++|.++++++|+..+...+.++++.+.++|+.
T Consensus 1167 ~d~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~ 1246 (1560)
T PTZ00243 1167 LDVVYSCSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEAD 1246 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998776554433322 223445789999999999999999999999999999999
Q ss_pred hhHHHHHHHHhc-CCCCCCCc-----------------------cccCCCC---CCCCCcceEEEeeeeEEeCCCCCcce
Q 000452 1213 IISVERIFQYTC-IPSEPPLE-----------------------IEESRPN---HSWPSHGKIDLRDLQVRYAPHMPFVL 1265 (1495)
Q Consensus 1213 ~~sveRi~~~~~-~~~E~~~~-----------------------~~~~~~~---~~wp~~g~I~f~nv~~~Y~~~~~~vL 1265 (1495)
|+|+||+.+|++ .|+|+... .+...++ +.||..|.|+|+||+|+|+++.|+||
T Consensus 1247 ~~s~eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~vL 1326 (1560)
T PTZ00243 1247 MNSVERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREGLPLVL 1326 (1560)
T ss_pred HHHHHHHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCCCCcee
Confidence 999999999996 44442110 0011122 23567799999999999998888899
Q ss_pred eeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccEEEcccCcCCCCcHHHhcCC
Q 000452 1266 RGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNVDP 1345 (1495)
Q Consensus 1266 ~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~isiIpQdp~LF~GTIR~NLdp 1345 (1495)
+||||+|+||||||||||||||||||+++|+|+++|++|+|.|||+||+++++++||++|++|||||+||+||||+||||
T Consensus 1327 ~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp 1406 (1560)
T PTZ00243 1327 RGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDP 1406 (1560)
T ss_pred ecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccC-CCeEEEEcCCCCCCHHHHHHHH
Q 000452 1346 LEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKR-RKILMLDEATASVDTATDNLIQ 1424 (1495)
Q Consensus 1346 ~~~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALLr~-~~ILiLDEaTsslD~~Td~~Iq 1424 (1495)
+++++|+|||+||++|+++++|.++|+||||.|+|+|.|||||||||||||||||++ |+|||||||||+||++||+.||
T Consensus 1407 ~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq 1486 (1560)
T PTZ00243 1407 FLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQ 1486 (1560)
T ss_pred ccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999996 8999999999999999999999
Q ss_pred HHHHHhcCCcEEEEEecCchhhhccCEEEEEeCcEEEEecChhHHhhcCCChHHHHHHHHhhc
Q 000452 1425 QSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSFSQLVAEYTQR 1487 (1495)
Q Consensus 1425 ~~Ir~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~ivE~gsp~~Ll~~~~s~f~~lv~~~~~~ 1487 (1495)
++|++.|++||||+||||++|+.+||+|+|||+|+|+|+|+|+||+++++|.|++|+++.+..
T Consensus 1487 ~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~~~~ 1549 (1560)
T PTZ00243 1487 ATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEALGRS 1549 (1560)
T ss_pred HHHHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhChh
Confidence 999999999999999999999999999999999999999999999988789999999887643
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-143 Score=1356.34 Aligned_cols=1154 Identities=22% Similarity=0.287 Sum_probs=849.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhCCC--Ccc----hhHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q 000452 297 RSVWKDVLLTALVAIVCTLATYVGPYLI---DTLVQYLSGKR--DFE----NEGYALVSAFCVAKLVECLCQ-RFFVFRL 366 (1495)
Q Consensus 297 ~~~~~~~~~~~~~~l~~~~~~~~~P~ll---~~li~~~~~~~--~~~----~~g~~l~~~l~~~~~~~~~~~-~~~~~~~ 366 (1495)
.+-+.++++..+-.+...+....+|++. ..+.+.+.... ... ..++.+ +.+.+..++.++++ ..|.+..
T Consensus 21 ~a~~~D~~Lm~~G~i~a~~~G~~~P~~~ii~g~~~~~~~~~~~~~~~~~~~~~~l~~-~~lg~~~~~~~~~q~~c~~~~g 99 (1228)
T KOG0055|consen 21 FADRFDYLLMILGSIGAIAHGLGLPLMSIIFGKLTDVLGDNTNKIASSEVSKVALYF-VYLGVGVFISGFIQVSCWMRTG 99 (1228)
T ss_pred ccchhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhccchhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555555556666543 44444443222 100 111111 11222223333333 4566667
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcchhcCCCHHHHHHHHHHHHHHHHHHHH-----HhhHHHHHHHHHHHHHHHHHHHHH
Q 000452 367 EQLGIRLRAALIAMIYNKGLKLSSQAKQGNTSGEIINFMTVDAERVAELSW-----YIHDPWLFLFEVALSFLILYKSLG 441 (1495)
Q Consensus 367 ~~~g~rir~~L~~~iy~K~L~ls~~~~~~~~~G~i~nl~s~D~~~i~~~~~-----~~~~~w~~pl~i~~~~~lL~~~lG 441 (1495)
.|...|+|......+ ||.....++.+.+|++.+.|+.|+++|++.+. .+|.+-.....++++++..|+
T Consensus 100 eRq~~riR~~yl~~i----LrQdi~~fD~~~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~ii~F~~~W~--- 172 (1228)
T KOG0055|consen 100 ERQTARIRSKYLKAI----LRQDIGWFDTNSTGELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIGFYYGWK--- 172 (1228)
T ss_pred HHHHHHHHHHHHHHH----HhCccceeecccccceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 777777777665555 55566777778889999999999999998653 444444444444455444442
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 442 IASVAAFFGTVIFMLVNVPLSTVQEKFQNELMKSKDERMKATSEILRNMRILKLQGWELKFLSKTIDLRKSESGWLKRCL 521 (1495)
Q Consensus 442 ~~~l~gl~~~i~~~~~~~~~~~~~~~~~~~~m~~~D~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~ 521 (1495)
.+++++....++......+++.+.+...+.+++..+--....|.+.+||++-.++-|+.-.++-.+ +++..+|..
T Consensus 173 -Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~----~L~~~~k~g 247 (1228)
T KOG0055|consen 173 -LTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSK----ALENALKFG 247 (1228)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHH----HHHHHHHHH
Confidence 345556666666666777788888888888888888889999999999999999999887666433 333333333
Q ss_pred HHHHHHHHHH------HHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 522 YTSSITSFVF------WCAPTFVSVITFGTCILLKVPLESGKVLSAIATFRLLQILIYKLPAIISMTIQTKVSLQRIASF 595 (1495)
Q Consensus 522 ~~~~~~~~~~------~~~p~~v~~~~f~~~~~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vs~~RI~~f 595 (1495)
....+...+. +........++||..++..+..++|.+|+++...-+-...+......+..+..|+++..+|.+-
T Consensus 248 i~~g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~ 327 (1228)
T KOG0055|consen 248 IKKGLFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFET 327 (1228)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHHH
Confidence 3333222222 1222233455677667777789999998888665566677778888899999999999999998
Q ss_pred hcCC-CCCcccccCCCCCCCcccEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCC
Q 000452 596 FCLD-ELQPDLVEKQPRGSSETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKIS 674 (1495)
Q Consensus 596 L~~~-e~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~ 674 (1495)
++.. +.++............+.|+++|++|+|+..++.++|+|+||+|++|+.+|+||||||||||++++|.+.++|++
T Consensus 328 i~~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~ 407 (1228)
T KOG0055|consen 328 IDRKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTS 407 (1228)
T ss_pred hcCCCCCCcccccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCC
Confidence 7653 333322122223334578999999999997777789999999999999999999999999999999999999999
Q ss_pred cEEEEcCe-------------EEEEccCCcccCccHHHHHhcCCC-CCHHHHHHHHHHhCcHHHHhhcCCCCcccccCCC
Q 000452 675 GTLKLCGT-------------KAYVAQSPWIQSGKIEDNILFGKE-MDRERYNAVLDACSLEKDLEILSFGDQTVVGERG 740 (1495)
Q Consensus 675 G~v~~~g~-------------~ayv~Q~~~l~~~ti~enI~fg~~-~~~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g 740 (1495)
|+|.++|. +|.|+|+|-+|++||+|||.||+| ..+++..++.+.....+.+..+|+|++|.+||+|
T Consensus 408 G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g 487 (1228)
T KOG0055|consen 408 GEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERG 487 (1228)
T ss_pred ceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCC
Confidence 99999983 599999999999999999999986 4678888999999999999999999999999999
Q ss_pred CccchHHHHHHHHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEecCCCccccCCEEEEEeCCEEE
Q 000452 741 INLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKIT 820 (1495)
Q Consensus 741 ~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~~~d~i~~l~~G~i~ 820 (1495)
.+|||||||||||||||.+||+||||||||||||++.++ +.++.+....+|+|.|+|+|+++.+.+||+|++|++|+|+
T Consensus 488 ~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~-~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~Iv 566 (1228)
T KOG0055|consen 488 VQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESER-VVQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIV 566 (1228)
T ss_pred CCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHH-HHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEEE
Confidence 999999999999999999999999999999999998755 5577888888999999999999999999999999999999
Q ss_pred EecChHHHHhcCCchhHHHHHHHhhhcccccccCCCCCCCCCCCCCCCCCCcccccccccccccccccccccccchhhhh
Q 000452 821 QAGKYTDVINSGTDFMELVDAHKQALSTLDSIEGRPLSEKGSANGENDGTSATDGVVKEVENKEVQNDREDKVAEPQRQL 900 (1495)
Q Consensus 821 ~~g~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 900 (1495)
+.|+++||++.++.|.++++.++......+..+..+..+......... . ......+.. ..........+.++.....
T Consensus 567 E~G~h~ELi~~~G~Y~~lv~~Q~~~~~~~~~~~~~~~~~~~~~s~~~s-~-~~~~~~~~~-~~~~~~~~~~~~e~~~~~~ 643 (1228)
T KOG0055|consen 567 EQGTHDELIALGGIYSSLVRLQELEKAAEDEEEEESLKEERSRSLKSS-S-SSPSLSRGS-NRSNLLSVKPEGEDPEEPV 643 (1228)
T ss_pred EecCHHHHHhccchHHHHHHHHhhhhhhhccccccchhhhhhhccccc-c-ccccccCCc-ccccccccccccccccccc
Confidence 999999999999999999988754432111000000000000000000 0 000000000 0000000000000000000
Q ss_pred hHHHHHhhcCchHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHhhHHHHHhhcccCCCCCC---CcchhHHHHHHHHH
Q 000452 901 VQEEEREKGKVEFSVYWKYITAAYG-GVLVPFILLAQTLFQILQIASNYWIAWATPASKDIKP---RVTGSMLLIVFVAL 976 (1495)
Q Consensus 901 ~~~e~~~~g~v~~~~y~~y~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~---~~~~~~~~~~y~~l 976 (1495)
.+++ -.++ +++-++.... |.++.+..++.++..+..-...+.+++........++ ......|..+|+++
T Consensus 644 -~~~~---~~~s---~~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~~l 716 (1228)
T KOG0055|consen 644 -SEED---EKVS---FWRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALIFLGL 716 (1228)
T ss_pred -cccc---cccc---HHHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH
Confidence 1111 1222 3333333322 2222222222222222211112222221111100111 11233488999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccccc--cccccchhHHhcchhHHHhhhHHHHHHHHHHHHH
Q 000452 977 AFGSSFCILARSTLLATAGYKTATLLFNKMHYCIFRAPMSFFDA--TPSGRIINRASTDQSAVDLSIPALIGSFAFSIIR 1054 (1495)
Q Consensus 977 ~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~ll~ap~~ffd~--tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~ 1054 (1495)
++++.++.++..+++.+.|.+..++++.++++++++.++.|||. +. |+|.+|+.+|...+...+...+..++.++..
T Consensus 717 ~~~~~i~~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~ns-g~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~ 795 (1228)
T KOG0055|consen 717 GIVSGITNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENS-GALSSRLATDASNVRAAVGDRLSLVVQNIAA 795 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccc-hHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999996 45 9999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcchHHHHhhccHHHHHHH
Q 000452 1055 VLGVIGVMSLVAWQVFIVFI---PVIATCIWYQQYYISSARELSRLVGVCKAPLIQHFAETVSGSTTIRSFDQESRFIDT 1131 (1495)
Q Consensus 1055 ~~~~~~~~~~~~~~~~~v~i---p~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~ 1131 (1495)
++..+++.++++|.++++.+ |++++..+.+.+++.. ..+..............|+++.++||++|+.|++|.+.
T Consensus 796 ~~~~iiiaf~~~W~lalv~la~~Pll~~~~~~~~~~~~~---~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~ 872 (1228)
T KOG0055|consen 796 VIIGIIIAFIYGWRLALVVLATFPLLILSGYLQKKFLKG---FSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMEL 872 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHH
Confidence 99999999999999988765 4444444444444433 22333333444556788999999999999999999999
Q ss_pred HHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH-HHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 1132 NMELMDGYSRPTFHVAAAMEWLGFRLDMLSNITFA---FSLVF-LISIPKGFIDPAIAGLAVTYGLTLNNLQAMLIWLAC 1207 (1495)
Q Consensus 1132 ~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~~~~~---~~~~~-~~~~~~~~~~~~~~gl~l~~~~~l~~~~~~~~~~~~ 1207 (1495)
+.+..+...+..+... .|-++...+-..++++ ++..+ ..+...|.+++..+-..+.-...-...+........
T Consensus 873 y~~~l~~p~~~~~~~~---~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~P 949 (1228)
T KOG0055|consen 873 YKEELEKPRKSSFKRG---LISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAP 949 (1228)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 9998887776655443 2333333333333222 22222 233456777776655444433333344555666667
Q ss_pred HHHHHhhHHHHHHHHhcCCCCCCCccccCCCCCCCCCcceEEEeeeeEEeCCC-CCcceeeeeEEeeCCcEEEEEcCCCC
Q 000452 1208 QMENKIISVERIFQYTCIPSEPPLEIEESRPNHSWPSHGKIDLRDLQVRYAPH-MPFVLRGISCTFPGEKKTGIVGRTGS 1286 (1495)
Q Consensus 1208 ~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nv~~~Y~~~-~~~vL~~Is~~I~~GekvgIVGrTGS 1286 (1495)
++-....|+.++++.++-+++-+...+. ....-+-+|+|+|+||+|+|+.. ..+||+|+|++|++|+.+|+||+|||
T Consensus 950 d~~ka~~Aa~~iF~i~dr~~~i~~~~~~--~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGs 1027 (1228)
T KOG0055|consen 950 DISKAKIAAGSIFEILDRKPTIDPDSTS--GGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGS 1027 (1228)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCCC--CCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCC
Confidence 7888899999999999866532211111 11111358999999999999733 13699999999999999999999999
Q ss_pred CHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccEEEcccCcCCCCcHHHhcCCC-CCCCHHHHHHHHHHcCCcH
Q 000452 1287 GKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNVDPL-EEYTDEQIWEALDKCQLGD 1365 (1495)
Q Consensus 1287 GKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~isiIpQdp~LF~GTIR~NLdp~-~~~sd~ei~~aL~~~~L~~ 1365 (1495)
||||++.+|.|+|+|.+|.|.|||.||++++++.||++|++|.|||+||++||||||... .+.+.+||.+|++.++.++
T Consensus 1028 GKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~ 1107 (1228)
T KOG0055|consen 1028 GKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHN 1107 (1228)
T ss_pred CHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHH
Confidence 999999999999999999999999999999999999999999999999999999999977 4589999999999999999
Q ss_pred HHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchh
Q 000452 1366 EVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITS 1445 (1495)
Q Consensus 1366 ~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~t 1445 (1495)
||.++|+||||.|||+|.+||||||||+|||||++||||||+||||||+||.++|+.+|++|++...+||.|+|||||+|
T Consensus 1108 FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLST 1187 (1228)
T KOG0055|consen 1108 FISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLST 1187 (1228)
T ss_pred HHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCEEEEEeCcEEEEecChhHHhhcCCChHHHHHHHH
Q 000452 1446 VIDSDMVLLLSHGLIEEYDSPRKLLENKSSSFSQLVAEY 1484 (1495)
Q Consensus 1446 i~~~DrIlVL~~G~ivE~gsp~~Ll~~~~s~f~~lv~~~ 1484 (1495)
|++||.|.|+++|+|+|.|+|++|++ ++|.|++|++..
T Consensus 1188 IqnaD~I~Vi~~G~VvE~GtH~~L~~-~~G~Y~~Lv~~q 1225 (1228)
T KOG0055|consen 1188 IQNADVIAVLKNGKVVEQGTHDELLA-KRGIYFRLVQLQ 1225 (1228)
T ss_pred hhcCCEEEEEECCEEEecccHHHHHh-CCCchHHHhhhc
Confidence 99999999999999999999999998 679999998754
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-135 Score=1380.34 Aligned_cols=1187 Identities=18% Similarity=0.196 Sum_probs=863.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 290 KLIKAMFRSVWKDVLLTALVAIVCTLATYVGPYLIDTLVQYLSGKRDFENEGYALVSAFCVAKLVECLCQRFFVFRLEQL 369 (1495)
Q Consensus 290 ~l~~al~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 369 (1495)
.+++..-+.+++.++++.++.++..++..+.|+++..+++.+...+. ...+++.+++..++..++.....+...++
T Consensus 49 ~~~~~~~~~~~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 124 (1466)
T PTZ00265 49 LPFKCLPASHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLGEN----VNDIIFSLVLIGIFQFILSFISSFCMDVV 124 (1466)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555677778888888889998888999999999987642211 11222333333444455555666777788
Q ss_pred HHHHHHHHHHHHHHHHhcCCcchhcCCCHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 370 GIRLRAALIAMIYNKGLKLSSQAKQGNTSGEIINFMTVDAERVAELS-WYIHDPWLFLFEVALSFLILYKSLGIASVAAF 448 (1495)
Q Consensus 370 g~rir~~L~~~iy~K~L~ls~~~~~~~~~G~i~nl~s~D~~~i~~~~-~~~~~~w~~pl~i~~~~~lL~~~lG~~~l~gl 448 (1495)
+.++...+...+|+|.++++....++.+.|++.|.++.|++.+.+.+ ..+..+...++.++.++++++..--..+++.+
T Consensus 125 ~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~~sw~Lalv~l 204 (1466)
T PTZ00265 125 TTKILKTLKLEFLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLFKNARLTLCIT 204 (1466)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 99999999999999999999998888999999999999999998865 34555556666666666655543333445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 449 FGTVIFMLVNVPLSTVQEKFQNELMKSKDERMKATSEILRNMRILKLQGWELKFLSKTIDLRKSESGWLKRCLYTSSITS 528 (1495)
Q Consensus 449 ~~~i~~~~~~~~~~~~~~~~~~~~m~~~D~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~~ 528 (1495)
+++.+++.+..++.+..++..++..+..++..+.+.|.++|||+||.|+-|+.+.++..+..+.-.+...+.....+...
T Consensus 205 ~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~~~~~~~ 284 (1466)
T PTZ00265 205 CVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESLHI 284 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555556666777888888888888889999999999999999999999999988887654444443333333333322
Q ss_pred HHHHHH--HHHHHHHHHHHHHHhcC--------CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000452 529 FVFWCA--PTFVSVITFGTCILLKV--------PLESGKVLSAIATFRLLQILIYKLPAIISMTIQTKVSLQRIASFFCL 598 (1495)
Q Consensus 529 ~~~~~~--p~~v~~~~f~~~~~~~~--------~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~ 598 (1495)
.+.... -..+.+++||.+.+..+ .++++.+++++...-+...++..+...+..+..+++|.+||.+.++.
T Consensus 285 ~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri~~ii~~ 364 (1466)
T PTZ00265 285 GMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEIINR 364 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 222211 12233456677666543 57888888766544444445555556688899999999999999976
Q ss_pred CCCCcccccCCCCCCCcccEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEE
Q 000452 599 DELQPDLVEKQPRGSSETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLK 678 (1495)
Q Consensus 599 ~e~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~ 678 (1495)
++..+......... ....|+++|++|+|+...+.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.
T Consensus 365 ~~~~~~~~~~~~~~-~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~ 443 (1466)
T PTZ00265 365 KPLVENNDDGKKLK-DIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDII 443 (1466)
T ss_pred CCCCCCCCCCccCC-CCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEE
Confidence 54322111111111 11369999999999743345799999999999999999999999999999999999999999999
Q ss_pred Ec-C-------------eEEEEccCCcccCccHHHHHhcCCC--------------------------------------
Q 000452 679 LC-G-------------TKAYVAQSPWIQSGKIEDNILFGKE-------------------------------------- 706 (1495)
Q Consensus 679 ~~-g-------------~~ayv~Q~~~l~~~ti~enI~fg~~-------------------------------------- 706 (1495)
++ | .++||+|+|.+|++||+|||.+|..
T Consensus 444 i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (1466)
T PTZ00265 444 INDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLN 523 (1466)
T ss_pred EeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhh
Confidence 95 4 2599999999999999999999741
Q ss_pred --------------------CCHHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHHHHHhccCCCEeEe
Q 000452 707 --------------------MDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLF 766 (1495)
Q Consensus 707 --------------------~~~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illL 766 (1495)
.++++..++++.++++++++.+|+|.+|.+|++|.+|||||||||+||||++++|+|+||
T Consensus 524 ~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlL 603 (1466)
T PTZ00265 524 DMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILIL 603 (1466)
T ss_pred hcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 234567788888999999999999999999999999999999999999999999999999
Q ss_pred cCcCCccCHHHHHHHHHHHHHHHh--CCCEEEEEecCCCccccCCEEEEEeCC---------------------------
Q 000452 767 DDPFSAVDAHTGSHLFKEVLLGLL--NSKTVLYVTHQVEFLPAADLVLVIKDG--------------------------- 817 (1495)
Q Consensus 767 Dep~saLD~~~~~~i~~~~~~~~~--~~~tvIlvTH~~~~l~~~d~i~~l~~G--------------------------- 817 (1495)
|||||+||+++++.+.+ .+.... +|+|+|+|||+++.+..||+|++|++|
T Consensus 604 DEpTSaLD~~se~~i~~-~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~ 682 (1466)
T PTZ00265 604 DEATSSLDNKSEYLVQK-TINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTKDNKENNNKNN 682 (1466)
T ss_pred eCcccccCHHHHHHHHH-HHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCccccccccccccccccccccccccccc
Confidence 99999999999888865 455443 489999999999999889999999986
Q ss_pred --------------------EEEEecChHHHHh-cCCchhHHHHHHHhhhcccc-c-ccCCCCCCCCCCCCCCCCC--Cc
Q 000452 818 --------------------KITQAGKYTDVIN-SGTDFMELVDAHKQALSTLD-S-IEGRPLSEKGSANGENDGT--SA 872 (1495)
Q Consensus 818 --------------------~i~~~g~~~~l~~-~~~~~~~l~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~--~~ 872 (1495)
+|+++|+++|+++ ..+.|..++..+........ . .+................. ..
T Consensus 683 ~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 762 (1466)
T PTZ00265 683 KDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQKVSSKKSSNNDNDKDSDMKSSAYKDSERGYDPDE 762 (1466)
T ss_pred cccccccccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhhcccccccccccccccccccccccccccccccccc
Confidence 5999999999997 57788888866432211100 0 0000000000000000000 00
Q ss_pred ccc-ccccccccc--ccccc--cc-cccchhhhhhHHHHH----hhcCchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 000452 873 TDG-VVKEVENKE--VQNDR--ED-KVAEPQRQLVQEEER----EKGKVEFSVYWKYITAAYGGVLVPFILLAQTLFQIL 942 (1495)
Q Consensus 873 ~~~-~~~~~~~~~--~~~~~--~~-~~~~~~~~~~~~e~~----~~g~v~~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~ 942 (1495)
... ......... ..... +. .......+....++. .+....+..+++++.......+ +.+++.++..++
T Consensus 763 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 840 (1466)
T PTZ00265 763 MNGNSKHENESASNKKSCKMSDENASENNAGGKLPFLRNLFKRKPKAPNNLRIVYREIFSYKKDVT--IIALSILVAGGL 840 (1466)
T ss_pred ccccccccccccccccccccccccccchhccccchhhhhccccccccchhHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 000 000000000 00000 00 000000000000000 0011122333444433222211 122222233333
Q ss_pred HHhhHHHHHhhcccCCC-CCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccccc-
Q 000452 943 QIASNYWIAWATPASKD-IKPRVTGSMLLIVFVALAFGSSFCILARSTLLATAGYKTATLLFNKMHYCIFRAPMSFFDA- 1020 (1495)
Q Consensus 943 ~~~~~~wl~~~~~~~~~-~~~~~~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~ll~ap~~ffd~- 1020 (1495)
....++.++.+.+..-. .........|..++++++++..++.+++.++....+.+...+++.++++++++.|++|||+
T Consensus 841 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~lR~~lf~~ll~~~~~~fd~~ 920 (1466)
T PTZ00265 841 YPVFALLYAKYVSTLFDFANLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKTMKRRLFENILYQEISFFDQD 920 (1466)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCC
Confidence 33334444333221000 0001123356667777788888889999999999999999999999999999999999996
Q ss_pred -cccccchhHHhcchhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Q 000452 1021 -TPSGRIINRASTDQSAVDLSIPALIGSFAFSIIRVLGVIGVMSLVAWQVFIVFIPVIATCIWYQQYYIS--SARELSRL 1097 (1495)
Q Consensus 1021 -tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~ip~~~~~~~~~~~y~~--~~r~l~rl 1097 (1495)
+++|++++|+++|++.+...+...+..++..++.+++.++++++.+|.++++++|++++.........+ ..++.++.
T Consensus 921 ~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1000 (1466)
T PTZ00265 921 KHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTYFIFMRVFAIRARLTANKDVEKK 1000 (1466)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 889999999999999999999999999999999999999999999999887776654443322211111 11122111
Q ss_pred -------------HHHhhhhHHHHHHHhhcchHHHHhhccHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHH
Q 000452 1098 -------------VGVCKAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGYSRPTFHVAAAMEWLGFRLDMLSNIT 1164 (1495)
Q Consensus 1098 -------------~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~~~ 1164 (1495)
+....+.....++|+++|++|||+|+.|+++.+++.+..+...+..........++....+.+..+.
T Consensus 1001 ~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1080 (1466)
T PTZ00265 1001 EINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFI 1080 (1466)
T ss_pred hccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233456788999999999999999999999999999988877766655444444433344443333
Q ss_pred HHHHHHH-HHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCCCCCccccCCC-CCCC
Q 000452 1165 FAFSLVF-LISIPKGFIDPAIAGLAVTYGLTLNNLQAMLIWLACQMENKIISVERIFQYTCIPSEPPLEIEESRP-NHSW 1242 (1495)
Q Consensus 1165 ~~~~~~~-~~~~~~~~~~~~~~gl~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~-~~~w 1242 (1495)
.+++.++ ...+..|.++.|.+..++.+.+........+...+.+++....|.+|+.++++.+++.+.......+ +...
T Consensus 1081 ~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~ 1160 (1466)
T PTZ00265 1081 NSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKN 1160 (1466)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCC
Confidence 3332222 2334578888887666555544444455667778888999999999999999876543211111110 0112
Q ss_pred CCcceEEEeeeeEEeCCC-CCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccC--------------------
Q 000452 1243 PSHGKIDLRDLQVRYAPH-MPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEP-------------------- 1301 (1495)
Q Consensus 1243 p~~g~I~f~nv~~~Y~~~-~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep-------------------- 1301 (1495)
+..|.|+|+||+|+|+.+ ..+||+|+||+|+|||+|||||+||||||||+++|+|+|+|
T Consensus 1161 ~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~ 1240 (1466)
T PTZ00265 1161 DIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQ 1240 (1466)
T ss_pred CCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccc
Confidence 346889999999999743 23699999999999999999999999999999999999999
Q ss_pred ----------------------------------CccEEEEcCEeCCCCCHHHHhcccEEEcccCcCCCCcHHHhcCCC-
Q 000452 1302 ----------------------------------AAGQILIDGIDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNVDPL- 1346 (1495)
Q Consensus 1302 ----------------------------------~~G~I~IDG~dI~~i~l~~LR~~isiIpQdp~LF~GTIR~NLdp~- 1346 (1495)
++|+|+|||+||+++++++||++|+||||||+||+|||||||...
T Consensus 1241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~ 1320 (1466)
T PTZ00265 1241 DYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGK 1320 (1466)
T ss_pred ccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCC
Confidence 699999999999999999999999999999999999999999876
Q ss_pred CCCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHH
Q 000452 1347 EEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQS 1426 (1495)
Q Consensus 1347 ~~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~ 1426 (1495)
++++|+||++|++.++++|+|.++|+||||.|||+|.+|||||||||||||||+|+|+|||||||||+||++||+.|+++
T Consensus 1321 ~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~ 1400 (1466)
T PTZ00265 1321 EDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKT 1400 (1466)
T ss_pred CCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHH
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhc--CCcEEEEEecCchhhhccCEEEEEeC----cEE-EEecChhHHhhcCCChHHHHHHHH
Q 000452 1427 LRQHF--SDCTVITIAHRITSVIDSDMVLLLSH----GLI-EEYDSPRKLLENKSSSFSQLVAEY 1484 (1495)
Q Consensus 1427 Ir~~f--~~~TVI~IAHRl~ti~~~DrIlVL~~----G~i-vE~gsp~~Ll~~~~s~f~~lv~~~ 1484 (1495)
|++.. +++|+|+||||++++.+||+|+||++ |++ +|.|+|+||+++++|.|++|++..
T Consensus 1401 L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~~~~g~Y~~l~~~~ 1465 (1466)
T PTZ00265 1401 IVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQDGVYKKYVKLA 1465 (1466)
T ss_pred HHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHhcCCChHHHHHhhc
Confidence 99884 69999999999999999999999999 995 599999999975679999998753
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-91 Score=843.81 Aligned_cols=548 Identities=23% Similarity=0.348 Sum_probs=475.2
Q ss_pred HHHHHHHHhhHHHHHhhcccCCC-CCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCc
Q 000452 937 TLFQILQIASNYWIAWATPASKD-IKPRVTGSMLLIVFVALAFGSSFCILARSTLLATAGYKTATLLFNKMHYCIFRAPM 1015 (1495)
Q Consensus 937 ~~~~~~~~~~~~wl~~~~~~~~~-~~~~~~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~ll~ap~ 1015 (1495)
++.....++.|+.+....+.... .+..........+..++.++++++.++|.+++.+.+.+...+++..++++++|..+
T Consensus 157 ~vss~~~~~iP~~~G~~id~~~~~~~~~~~~~~~~~~l~~l~~~~a~~~~~r~~~~~~a~~rv~~rlR~~lF~sil~Qdi 236 (716)
T KOG0058|consen 157 LVSSLINMFIPYYLGKLIDTISEGDDSADALKRACTILLGLFLIGALANAIRGGLLQYAGERVVARLRTDLFRSLLRQDI 236 (716)
T ss_pred HHHHhhcchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34444556666655422221111 11112233456677888899999999999999999999999999999999999999
Q ss_pred ccccccccccchhHHhcchhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 1016 SFFDATPSGRIINRASTDQSAVDLSIPALIGSFAFSIIRVLGVIGVMSLVAWQVFIVFIPVIATCIWYQQYYISSARELS 1095 (1495)
Q Consensus 1016 ~ffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~ip~~~~~~~~~~~y~~~~r~l~ 1095 (1495)
.|||.+.+|++++|+++|...+...++..+...+.+.++.++.+++|++++|.+.++.+..+++...+.++|.+..|++.
T Consensus 237 aFFD~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~Ltlv~~i~~P~v~~~~~~yG~~~rklS 316 (716)
T KOG0058|consen 237 AFFDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRLTLVTLIVVPIVALVAKIYGKYLRKLS 316 (716)
T ss_pred hhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999888777888888888888888888
Q ss_pred HHHHHhhhhHHHHHHHhhcchHHHHhhccHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 000452 1096 RLVGVCKAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGYSRPTFHVAAAMEWLGFRLDMLSNITFAFSLVF-LIS 1174 (1495)
Q Consensus 1096 rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~~~~~~~~~~-~~~ 1174 (1495)
+...++-+...+...|.+++++|+|+|+.|++..+++.+.++.-.+.......+...+....++.+.+....++.+ ..+
T Consensus 317 ~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a~~~f~~~~~~~~~~~~~siL~~Gg~L 396 (716)
T KOG0058|consen 317 KQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVAYGIFFGSTNLLGNLAVLSILFYGGHL 396 (716)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHhHhHHHHHHhHHHHHHHHhccch
Confidence 8889999999999999999999999999999888888888777665554443333333333444444333333332 334
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCCCCCccccCCCCCCCCCcceEEEeeee
Q 000452 1175 IPKGFIDPAIAGLAVTYGLTLNNLQAMLIWLACQMENKIISVERIFQYTCIPSEPPLEIEESRPNHSWPSHGKIDLRDLQ 1254 (1495)
Q Consensus 1175 ~~~~~~~~~~~gl~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nv~ 1254 (1495)
...|.+++|..-..+.|...+...+..+...+.++-+...|.+|++||++.++.-+.. ....| . +-+|.|+|+||+
T Consensus 397 v~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~~--G~~~p-~-~~~G~IeF~~Vs 472 (716)
T KOG0058|consen 397 VLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPLT--GTLAP-D-HLQGVIEFEDVS 472 (716)
T ss_pred hhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCCCC--Ccccc-c-cccceEEEEEee
Confidence 4578899999999999999999999999999999999999999999999876654332 11111 2 468999999999
Q ss_pred EEeCCC-CCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccEEEcccCc
Q 000452 1255 VRYAPH-MPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSIIPQDPV 1333 (1495)
Q Consensus 1255 ~~Y~~~-~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~isiIpQdp~ 1333 (1495)
|.|+.. ..+||||+||+|+|||.||+||||||||||++++|.|+|+|++|+|++||+||++++.+.||++||+|.|||+
T Consensus 473 FaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPv 552 (716)
T KOG0058|consen 473 FAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPV 552 (716)
T ss_pred eecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccce
Confidence 999754 2369999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcHHHhcCCC-CCCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCeEEEEcCC
Q 000452 1334 MFEGTVRSNVDPL-EEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEAT 1412 (1495)
Q Consensus 1334 LF~GTIR~NLdp~-~~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALLr~~~ILiLDEaT 1412 (1495)
||+|||||||.+. .+.+||||.+|+++++.+|||.++|+||||.|||+|..|||||||||+|||||+|||+||||||||
T Consensus 553 LFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEAT 632 (716)
T KOG0058|consen 553 LFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEAT 632 (716)
T ss_pred eecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechh
Confidence 9999999999754 479999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhccCEEEEEeCcEEEEecChhHHhhcCCChHHHHHHHHhhcc
Q 000452 1413 ASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSFSQLVAEYTQRS 1488 (1495)
Q Consensus 1413 sslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~ivE~gsp~~Ll~~~~s~f~~lv~~~~~~~ 1488 (1495)
|+||.++|..+|++|.+..+++|||+|||||+||+.+|+|+|+|+|+|+|.|+|+||+++++|.|++|+++.....
T Consensus 633 SALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h~eLl~~~~gly~~Lv~~q~~~~ 708 (716)
T KOG0058|consen 633 SALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHDELLSKPNGLYAKLVQRQLDSG 708 (716)
T ss_pred hhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecccHHHHhhCcccHHHHHHHHhcccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999876543
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-84 Score=818.79 Aligned_cols=565 Identities=27% Similarity=0.366 Sum_probs=502.8
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhcccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 913 FSVYWKYITAAYGGVLVPFILLAQTLFQILQIASNYWIAWATPASKDIKPRVTGSMLLIVFVALAFGSSFCILARSTLLA 992 (1495)
Q Consensus 913 ~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~~~~~ 992 (1495)
+..++.++... +..+.-+++..++.+++.+++++...+..+..-.............+++++++...++.++|.+++.
T Consensus 142 ~~~f~~~~~~~--~~~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~ 219 (709)
T COG2274 142 LSWFIPLLFKY--RRLLFEVLLASLLLQLLALATPLFSQIVIDKVLPDASRSTLTVLAIGLLLAALFEALLRLLRTYLIA 219 (709)
T ss_pred hHhHHHHHHhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445444433 2233345556778889999999999877754321111122334455666777888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHccCCcccccccccccchhHHhcchhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 993 TAGYKTATLLFNKMHYCIFRAPMSFFDATPSGRIINRASTDQSAVDLSIPALIGSFAFSIIRVLGVIGVMSLVAWQVFIV 1072 (1495)
Q Consensus 993 ~~~~~~s~~l~~~ll~~ll~ap~~ffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v 1072 (1495)
..+.+....+-.++++++++.|++||+++++|++++|++ |++.|-..+...+...+..++.++..+++|++++|+++++
T Consensus 220 ~~~~rld~~l~~~~~~hll~Lpl~~f~~r~~Ge~~sR~~-el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L~li 298 (709)
T COG2274 220 HLGKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLI 298 (709)
T ss_pred HHHHHHhHHHHHHHHHHHHcCcHHHccCCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999996 7888888888888888888888899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcchHHHHhhccHHHHHHHHHHHHHHhhchHHHHHHHHHH
Q 000452 1073 FIPVIATCIWYQQYYISSARELSRLVGVCKAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGYSRPTFHVAAAMEW 1152 (1495)
Q Consensus 1073 ~ip~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~w 1152 (1495)
.+..++++..+.-+..+..|+..+......+...++..|++.|+.|||+.+.|++|..++.+..+++.+..+.......|
T Consensus 299 ~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~ 378 (709)
T COG2274 299 VLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALI 378 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 88888888888778888888888888888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCCCCC
Q 000452 1153 LGFRLDMLSNITFAFSLVF-LISIPKGFIDPAIAGLAVTYGLTLNNLQAMLIWLACQMENKIISVERIFQYTCIPSEPPL 1231 (1495)
Q Consensus 1153 l~~rl~~l~~~~~~~~~~~-~~~~~~~~~~~~~~gl~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~E~~~ 1231 (1495)
.+....++..+....++++ ...+..|.++.|..-...+.+..+.+++..++..+.+++....+.+|+.+.++.|+|.+.
T Consensus 379 ~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~ 458 (709)
T COG2274 379 LNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEG 458 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence 8888888887776666665 344567889999988888888999999999999999999999999999999999988643
Q ss_pred ccccCCCCCCCCCcceEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCE
Q 000452 1232 EIEESRPNHSWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGI 1311 (1495)
Q Consensus 1232 ~~~~~~~~~~wp~~g~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~ 1311 (1495)
+..+...|+.+|+|+|+||+|+|+++.|++|+|+|++|+|||+|||||+||||||||+++|.|+|+|++|+|.+||+
T Consensus 459 ---~~~~~~~~~~~g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~ 535 (709)
T COG2274 459 ---DKTLIHLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGV 535 (709)
T ss_pred ---ccccccccccCceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE
Confidence 22244566778999999999999999889999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCHHHHhcccEEEcccCcCCCCcHHHhcCCCC-CCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHH
Q 000452 1312 DISLIGLHDLRTRLSIIPQDPVMFEGTVRSNVDPLE-EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQR 1390 (1495)
Q Consensus 1312 dI~~i~l~~LR~~isiIpQdp~LF~GTIR~NLdp~~-~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQr 1390 (1495)
|++++++++||++|+|||||++||+|||||||...+ +.+|||+++|++.++++|+|.++|.||||+|+|+|.|||||||
T Consensus 536 dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQr 615 (709)
T COG2274 536 DLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQR 615 (709)
T ss_pred eHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHH
Confidence 999999999999999999999999999999998654 6889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhccCEEEEEeCcEEEEecChhHHh
Q 000452 1391 QLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLL 1470 (1495)
Q Consensus 1391 Qrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~ivE~gsp~~Ll 1470 (1495)
|||+|||||+++|+|||||||||+||++||+.|.+.|.+...+||+|+||||++|+++||||+|||+|+|+|+|+|+||+
T Consensus 616 QrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell 695 (709)
T COG2274 616 QRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELL 695 (709)
T ss_pred HHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCChHHHHHHHH
Q 000452 1471 ENKSSSFSQLVAEY 1484 (1495)
Q Consensus 1471 ~~~~s~f~~lv~~~ 1484 (1495)
+. +|.|+++++..
T Consensus 696 ~~-~g~y~~l~~~q 708 (709)
T COG2274 696 AQ-GGLYARLYQQQ 708 (709)
T ss_pred Hh-cChHHHHHhcc
Confidence 87 79999998753
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-80 Score=788.17 Aligned_cols=545 Identities=28% Similarity=0.379 Sum_probs=458.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHhhcccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 000452 932 ILLAQTLFQILQIASNYWIAWATPASKDIKPRVTGSMLLIVFVALAFGSSFCILARSTLLATAGYKTATLLFNKMHYCIF 1011 (1495)
Q Consensus 932 ~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~ll 1011 (1495)
..++.++...+....++++.+..+... ........+...++++.++..++.+...++....+.+....++.+++++++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~lr~~~~~~l~ 96 (567)
T COG1132 19 AILLLLLSALLSLLLPLLIGRIIDALL--ADLGELLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLL 96 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445556677777777775543211 011112334445555555667777777777788889999999999999999
Q ss_pred cCCcccccccccccchhHHhcchhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 1012 RAPMSFFDATPSGRIINRASTDQSAVDLSIPALIGSFAFSIIRVLGVIGVMSLVAWQVFIVFIPVIATCIWYQQYYISSA 1091 (1495)
Q Consensus 1012 ~ap~~ffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~ip~~~~~~~~~~~y~~~~ 1091 (1495)
+.|+++|+++++|++++|+++|++.++..+......+...++.+++.+++++..+|.+.++++...+++.....++.+..
T Consensus 97 ~~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~ 176 (567)
T COG1132 97 RLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKS 176 (567)
T ss_pred hCCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999888866666678888999999999999988887776666666666666666
Q ss_pred HHHHHHHHHhhhhHHHHHHHhhcchHHHHhhccHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 1092 RELSRLVGVCKAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGYSRPTFHVAAAMEWLGFRLDMLSNITFAFSLVF 1171 (1495)
Q Consensus 1092 r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~~~~~~~~~~ 1171 (1495)
++..+......+.+.+.+.|+++|+++||+|+.++...+++.+..+...+...........+.....++..+.......+
T Consensus 177 ~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (567)
T COG1132 177 RKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSLGTVLVLAL 256 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888899999999999999999999999999887777776666665554444444444333334433333322222
Q ss_pred -HHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCCCCCccccCCCCCCCCCcceEEE
Q 000452 1172 -LISIPKGFIDPAIAGLAVTYGLTLNNLQAMLIWLACQMENKIISVERIFQYTCIPSEPPLEIEESRPNHSWPSHGKIDL 1250 (1495)
Q Consensus 1172 -~~~~~~~~~~~~~~gl~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~f 1250 (1495)
......+.++.|.....+.|...+...+..+...+..++....|.||+.++.+.+++... ... ..++..|+|+|
T Consensus 257 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~---~~~--~~~~~~~~I~f 331 (567)
T COG1132 257 GGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVED---PPD--PLKDTIGSIEF 331 (567)
T ss_pred HHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccC---CCC--CCCCCCCeEEE
Confidence 223445678899999999999999999999999999999999999999999987554221 111 13456788999
Q ss_pred eeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccEEEcc
Q 000452 1251 RDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSIIPQ 1330 (1495)
Q Consensus 1251 ~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~isiIpQ 1330 (1495)
+||+|+|+++ +++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|.|||+||+++++.+||++|++|||
T Consensus 332 ~~vsf~y~~~-~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Q 410 (567)
T COG1132 332 ENVSFSYPGK-KPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQ 410 (567)
T ss_pred EEEEEEcCCC-CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcc
Confidence 9999999864 469999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcCCCCcHHHhcCCCCC-CCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCeEEEE
Q 000452 1331 DPVMFEGTVRSNVDPLEE-YTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLD 1409 (1495)
Q Consensus 1331 dp~LF~GTIR~NLdp~~~-~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALLr~~~ILiLD 1409 (1495)
||+||+||||+||+++.+ ++|||+++|+++++++|+|.++|+||||.|||+|.+||||||||+|||||++|+|+|||||
T Consensus 411 d~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILD 490 (567)
T COG1132 411 DPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILD 490 (567)
T ss_pred cceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 999999999999998864 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhccCEEEEEeCcEEEEecChhHHhhcCCChHHHHHHHHh
Q 000452 1410 EATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSFSQLVAEYT 1485 (1495)
Q Consensus 1410 EaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~ivE~gsp~~Ll~~~~s~f~~lv~~~~ 1485 (1495)
||||++|++||+.|++.+++..+++|+|+||||++|+.+||+|+|||+|+|+|+|+|+||+++ +|.|++|+++..
T Consensus 491 EaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~-~g~y~~l~~~~~ 565 (567)
T COG1132 491 EATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAK-GGLYARLYQAQG 565 (567)
T ss_pred ccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHc-CCHHHHHHHHhh
Confidence 999999999999999999988889999999999999999999999999999999999999986 799999998764
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-78 Score=777.80 Aligned_cols=564 Identities=18% Similarity=0.221 Sum_probs=454.4
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhcccCCCCCCCc-chhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 914 SVYWKYITAAYGGVLVPFILLAQTLFQILQIASNYWIAWATPASKDIKPRV-TGSMLLIVFVALAFGSSFCILARSTLLA 992 (1495)
Q Consensus 914 ~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~-~~~~~~~~y~~l~~~~~~~~~~~~~~~~ 992 (1495)
+.++.|++...+.. .+.+++.++..++.+..++.+.+..+......... ....++.+++++.++..++.+.+.++..
T Consensus 11 ~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (588)
T PRK11174 11 RWLKQQSKPAKRWL--NLSILLGFLSGLLLIAQAWLLATILQALIIENIPREALLPPFILLILLFVLRALLAWLRERVGF 88 (588)
T ss_pred HHHHHHhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666543322 23334445666666777777665543211001111 1223344555566667778888888888
Q ss_pred HHHHHHHHHHHHHHHHHHccCCcccccccccccchhHHhcchhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 993 TAGYKTATLLFNKMHYCIFRAPMSFFDATPSGRIINRASTDQSAVDLSIPALIGSFAFSIIRVLGVIGVMSLVAWQVFIV 1072 (1495)
Q Consensus 993 ~~~~~~s~~l~~~ll~~ll~ap~~ffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v 1072 (1495)
..+.+....++.++++++++.|+++|+..++|++++|+++|++.++..+...+..++..++.+++.++++++++|++.++
T Consensus 89 ~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~ 168 (588)
T PRK11174 89 KAGQHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAAGLI 168 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998888899888888888899999999998877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcchHHHHhhccHHHHHHHHHHHHHHhhchHHHHHHHHHH
Q 000452 1073 FIPVIATCIWYQQYYISSARELSRLVGVCKAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGYSRPTFHVAAAMEW 1152 (1495)
Q Consensus 1073 ~ip~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~w 1152 (1495)
++..+++..++..++.+..++..+......+.+.+++.|+++|+.+||+|++|+++.+++.+..++..+..........+
T Consensus 169 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (588)
T PRK11174 169 LLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAFL 248 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76666666666667777777777777788899999999999999999999999999999988888877766555444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Q 000452 1153 LGFRLDMLSNITFAFSLVFLISIPKGFIDPAIA---------GLAVTYGLTLNNLQAMLIWLACQMENKIISVERIFQYT 1223 (1495)
Q Consensus 1153 l~~rl~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------gl~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~ 1223 (1495)
......++..+...+++++......|.++.|.. -.++.+...+..++..+...+..+.....+.+|+.+++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l 328 (588)
T PRK11174 249 SSAVLEFFASISIALVAVYFGFSYLGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVTFL 328 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444443332222211211111244444432 22234555566777888888889999999999999999
Q ss_pred cCCCCCCCccccCCCCCCCCCcceEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCc
Q 000452 1224 CIPSEPPLEIEESRPNHSWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAA 1303 (1495)
Q Consensus 1224 ~~~~E~~~~~~~~~~~~~wp~~g~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~ 1303 (1495)
+.|++++.. ...+ ...+..+.|+|+||+|.|.++ +++|+|+||+|+|||++||||+||||||||+++|+|++ |++
T Consensus 329 ~~~~~~~~~--~~~~-~~~~~~~~i~~~~vsf~~~~~-~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~ 403 (588)
T PRK11174 329 ETPLAHPQQ--GEKE-LASNDPVTIEAEDLEILSPDG-KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQ 403 (588)
T ss_pred cCCCcccCC--Cccc-cCCCCCceEEEEeeEEeccCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCC
Confidence 876543211 1101 111234679999999988655 56999999999999999999999999999999999999 999
Q ss_pred cEEEEcCEeCCCCCHHHHhcccEEEcccCcCCCCcHHHhcCCC-CCCCHHHHHHHHHHcCCcHHHHhccCCcccccccCC
Q 000452 1304 GQILIDGIDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNVDPL-EEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENG 1382 (1495)
Q Consensus 1304 G~I~IDG~dI~~i~l~~LR~~isiIpQdp~LF~GTIR~NLdp~-~~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G 1382 (1495)
|+|.+||+|+++++.+++|++|+||||||+||+|||||||... ++++|||+++|+++|+++++|+++|+||||.|||+|
T Consensus 404 G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G 483 (588)
T PRK11174 404 GSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQA 483 (588)
T ss_pred cEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCC
Confidence 9999999999999999999999999999999999999999876 469999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhccCEEEEEeCcEEEE
Q 000452 1383 ENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 1462 (1495)
Q Consensus 1383 ~nLS~GQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~ivE 1462 (1495)
.||||||||||+||||++++|+|||||||||+||++|++.|++.|++..+++|+|+||||++++.+||+|+||++|+|+|
T Consensus 484 ~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e 563 (588)
T PRK11174 484 AGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQ 563 (588)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeCCeEee
Confidence 99999999999999999999999999999999999999999999999989999999999999999999999999999999
Q ss_pred ecChhHHhhcCCChHHHHHHHHh
Q 000452 1463 YDSPRKLLENKSSSFSQLVAEYT 1485 (1495)
Q Consensus 1463 ~gsp~~Ll~~~~s~f~~lv~~~~ 1485 (1495)
.|+|+||+++ ++.|+++++...
T Consensus 564 ~G~~~eL~~~-~~~y~~l~~~q~ 585 (588)
T PRK11174 564 QGDYAELSQA-GGLFATLLAHRQ 585 (588)
T ss_pred cCCHHHHHhc-chHHHHHHHHhh
Confidence 9999999975 689999987643
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-78 Score=788.49 Aligned_cols=556 Identities=22% Similarity=0.318 Sum_probs=462.6
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhcccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 915 VYWKYITAAYGGVLVPFILLAQTLFQILQIASNYWIAWATPASKDIKPRVTGSMLLIVFVALAFGSSFCILARSTLLATA 994 (1495)
Q Consensus 915 ~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~ 994 (1495)
.+++|++.... .+...+++.++..+..++.++++....+..............+.+++++.++..++..++..+....
T Consensus 151 ~l~~~~~~~~~--~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 228 (711)
T TIGR00958 151 RLLGLSGRDWP--WLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPALASAIFFMCLLSIASSVSAGLRGGSFNYT 228 (711)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555554322 2333444456667777778887775554221111111112234555566677778888899999999
Q ss_pred HHHHHHHHHHHHHHHHccCCcccccccccccchhHHhcchhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 995 GYKTATLLFNKMHYCIFRAPMSFFDATPSGRIINRASTDQSAVDLSIPALIGSFAFSIIRVLGVIGVMSLVAWQVFIVFI 1074 (1495)
Q Consensus 995 ~~~~s~~l~~~ll~~ll~ap~~ffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~i 1074 (1495)
+.+...+++.++++++++.|+.||+++++|+++||+++|++.++..+...+..++..++.+++.+++++..+|++.++++
T Consensus 229 ~~~~~~~lr~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l~l~~l 308 (711)
T TIGR00958 229 MARINLRIREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTL 308 (711)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcchHHHHhhccHHHHHHHHHHHHHHhhchHHHHHHH---HH
Q 000452 1075 PVIATCIWYQQYYISSARELSRLVGVCKAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGYSRPTFHVAAA---ME 1151 (1495)
Q Consensus 1075 p~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~---~~ 1151 (1495)
..+++..++..++.+..++..+......+...+++.|+++|+.+||+|+.|+++.+++.+..++..+........ ..
T Consensus 309 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (711)
T TIGR00958 309 INLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYL 388 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666667777777777777777788888999999999999999999999999999988888776665443332 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCCCCC
Q 000452 1152 WLGFRLDMLSNITFAFSLVFLISIPKGFIDPAIAGLAVTYGLTLNNLQAMLIWLACQMENKIISVERIFQYTCIPSEPPL 1231 (1495)
Q Consensus 1152 wl~~rl~~l~~~~~~~~~~~~~~~~~~~~~~~~~gl~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~E~~~ 1231 (1495)
|....+..+..+.+... .......|.+++|.+..++.|...+...+..+...+.++++...+.+|+.++++.+++.+.
T Consensus 389 ~~~~~~~~~~~~~il~~--g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~ 466 (711)
T TIGR00958 389 WTTSVLGMLIQVLVLYY--GGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPL 466 (711)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 33322222222221111 1223447889999999999999999999999999999999999999999999987655432
Q ss_pred ccccCCCCCCCCCcceEEEeeeeEEeCCC-CCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcC
Q 000452 1232 EIEESRPNHSWPSHGKIDLRDLQVRYAPH-MPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDG 1310 (1495)
Q Consensus 1232 ~~~~~~~~~~wp~~g~I~f~nv~~~Y~~~-~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG 1310 (1495)
. .....++..|.|+|+||+|+|+.+ .+++|+|+||+|+|||++||||+||||||||+++|+|+++|++|+|.+||
T Consensus 467 ~----~~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg 542 (711)
T TIGR00958 467 T----GTLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDG 542 (711)
T ss_pred C----CCCCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECC
Confidence 1 111223557889999999999753 35799999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCHHHHhcccEEEcccCcCCCCcHHHhcCCC-CCCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchH
Q 000452 1311 IDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNVDPL-EEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQ 1389 (1495)
Q Consensus 1311 ~dI~~i~l~~LR~~isiIpQdp~LF~GTIR~NLdp~-~~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQ 1389 (1495)
+|+++++.+++|++|+||||||++|+|||||||... ++.+|+++++|+++++++++++++|+|+||.+||+|.+|||||
T Consensus 543 ~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQ 622 (711)
T TIGR00958 543 VPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQ 622 (711)
T ss_pred EEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHH
Confidence 999999999999999999999999999999999855 5689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhccCEEEEEeCcEEEEecChhHH
Q 000452 1390 RQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKL 1469 (1495)
Q Consensus 1390 rQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~ivE~gsp~~L 1469 (1495)
|||++||||++++|+|||||||||+||++|++.|++ ....+++|+|+||||++++..||+|+||++|+|+|.|+|+||
T Consensus 623 kQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~--~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL 700 (711)
T TIGR00958 623 KQRIAIARALVRKPRVLILDEATSALDAECEQLLQE--SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQL 700 (711)
T ss_pred HHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH--hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHH
Confidence 999999999999999999999999999999999999 344579999999999999999999999999999999999999
Q ss_pred hhcCCChHHHHH
Q 000452 1470 LENKSSSFSQLV 1481 (1495)
Q Consensus 1470 l~~~~s~f~~lv 1481 (1495)
+++ ++.|++|+
T Consensus 701 ~~~-~~~y~~lv 711 (711)
T TIGR00958 701 MED-QGCYKHLV 711 (711)
T ss_pred HhC-CCchHhcC
Confidence 976 58898874
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-77 Score=779.40 Aligned_cols=544 Identities=21% Similarity=0.245 Sum_probs=462.5
Q ss_pred HHHHHHHHHHHHHHhhHHHHHhhcccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 931 FILLAQTLFQILQIASNYWIAWATPASKDIKPRVTGSMLLIVFVALAFGSSFCILARSTLLATAGYKTATLLFNKMHYCI 1010 (1495)
Q Consensus 931 ~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~l 1010 (1495)
.++++.++..++.++.++.+....+.............+..+++++.++..++.+++.++....+.+....++.++++++
T Consensus 140 ~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l 219 (686)
T TIGR03797 140 AILAMGLLGTLLGMLVPIATGILIGTAIPDADRSLLVQIALALLAAAVGAAAFQLAQSLAVLRLETRMDASLQAAVWDRL 219 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666777777888777655532211111111222344556666677888889999999999999999999999999
Q ss_pred ccCCcccccccccccchhHHhcchhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 1011 FRAPMSFFDATPSGRIINRASTDQSAVDLSIPALIGSFAFSIIRVLGVIGVMSLVAWQVFIVFIPVIATCIWYQQYYISS 1090 (1495)
Q Consensus 1011 l~ap~~ffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~ip~~~~~~~~~~~y~~~ 1090 (1495)
++.|++||++.++|++++|++ |.+.+...+...+...+..++..++.++++++++|+++++.+.++++++.+..++.+.
T Consensus 220 l~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~ 298 (686)
T TIGR03797 220 LRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAVALALVAIAVTLVLGLL 298 (686)
T ss_pred HcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999997 7888888888777777777777778888899999998887776666655555555555
Q ss_pred HHHHHHHHHHhhhhHHHHHHHhhcchHHHHhhccHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 1091 ARELSRLVGVCKAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGYSRPTFHVAAAMEWLGFRLDMLSNITFAFSLV 1170 (1495)
Q Consensus 1091 ~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~~~~~~~~~ 1170 (1495)
.+...+......+...+++.|+++|+.+||+|+.|+++.+++.+..+...+..+.......|.......+..+...++.+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~ 378 (686)
T TIGR03797 299 QVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLTVFNAVLPVLTSAALFA 378 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666667778999999999999999999999999999999999988888888777777776666655444333333
Q ss_pred H-HHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCCCCCccccCCCCCCCCCcceEE
Q 000452 1171 F-LISIPKGFIDPAIAGLAVTYGLTLNNLQAMLIWLACQMENKIISVERIFQYTCIPSEPPLEIEESRPNHSWPSHGKID 1249 (1495)
Q Consensus 1171 ~-~~~~~~~~~~~~~~gl~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~ 1249 (1495)
+ ......|.++.|.+-.+.++...+..++..+...+.++.....+.+|+.++++.|+|.+.. ..+ ..+..|.|+
T Consensus 379 ~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~---~~~--~~~~~~~I~ 453 (686)
T TIGR03797 379 AAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEA---KTD--PGKLSGAIE 453 (686)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccC---cCC--CCCCCceEE
Confidence 3 2333578899998888888888899999999999999999999999999999877664311 111 123457899
Q ss_pred EeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccEEEc
Q 000452 1250 LRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSIIP 1329 (1495)
Q Consensus 1250 f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~isiIp 1329 (1495)
|+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|+|+++|++|+|.+||+|+++++.+++|++++|||
T Consensus 454 ~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~ 533 (686)
T TIGR03797 454 VDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVL 533 (686)
T ss_pred EEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEc
Confidence 99999999876678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcCCCCcHHHhcCCCCCCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCeEEEE
Q 000452 1330 QDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLD 1409 (1495)
Q Consensus 1330 Qdp~LF~GTIR~NLdp~~~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALLr~~~ILiLD 1409 (1495)
|||.+|+|||||||...+.++|+|+++|++.++++++++++|+|+||.++|+|.|||||||||++||||++++|+|||||
T Consensus 534 Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLD 613 (686)
T TIGR03797 534 QNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFD 613 (686)
T ss_pred cCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99999999999999977669999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhccCEEEEEeCcEEEEecChhHHhhcCCChHHHHHHH
Q 000452 1410 EATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSFSQLVAE 1483 (1495)
Q Consensus 1410 EaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~ivE~gsp~~Ll~~~~s~f~~lv~~ 1483 (1495)
||||+||++||+.|++.|++. ++|+|+||||++++.+||+|+|||+|+|+|.|+|++|+++ ++.|++|+++
T Consensus 614 EpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~~-~~~y~~l~~~ 684 (686)
T TIGR03797 614 EATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAR-EGLFAQLARR 684 (686)
T ss_pred CCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHhC-CcHHHHHHHh
Confidence 999999999999999999986 6899999999999999999999999999999999999975 6999999874
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-77 Score=782.56 Aligned_cols=563 Identities=22% Similarity=0.302 Sum_probs=473.7
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhcccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 913 FSVYWKYITAAYGGVLVPFILLAQTLFQILQIASNYWIAWATPASKDIKPRVTGSMLLIVFVALAFGSSFCILARSTLLA 992 (1495)
Q Consensus 913 ~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~~~~~ 992 (1495)
++.++.+++...+. ...++++.++.+++.++.++.+....+.............+..+++++.++..++.+++.++..
T Consensus 142 ~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (710)
T TIGR03796 142 LRALWRRLRGSRGA--LLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGRQDWLRPLLLGMGLTALLQGVLTWLQLYYLR 219 (710)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666654322 2334444566677777778877765542211111111223344555566677788899999999
Q ss_pred HHHHHHHHHHHHHHHHHHccCCcccccccccccchhHHhcchhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 993 TAGYKTATLLFNKMHYCIFRAPMSFFDATPSGRIINRASTDQSAVDLSIPALIGSFAFSIIRVLGVIGVMSLVAWQVFIV 1072 (1495)
Q Consensus 993 ~~~~~~s~~l~~~ll~~ll~ap~~ffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v 1072 (1495)
..+.+....++.++++++++.|++||++.++|++++|++.| +.+...+...+..++..++.+++.++++++++|+++++
T Consensus 220 ~~~~~~~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li 298 (710)
T TIGR03796 220 RLQIKLAVGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLI 298 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998 56787788788888888888888999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcchHHHHhhccHHHHHHHHHHHHHHhhchHHHHHHHHHH
Q 000452 1073 FIPVIATCIWYQQYYISSARELSRLVGVCKAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGYSRPTFHVAAAMEW 1152 (1495)
Q Consensus 1073 ~ip~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~w 1152 (1495)
.+..++++.++..++.+..++..+......+...+++.|+++|+.+||+++.|+.+.+++.+..++..+..........|
T Consensus 299 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (710)
T TIGR03796 299 GIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQI 378 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87777777777777777777777777788889999999999999999999999999999998888888777776666666
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCCCCC
Q 000452 1153 LGFRLDMLSNITFAFSLVF-LISIPKGFIDPAIAGLAVTYGLTLNNLQAMLIWLACQMENKIISVERIFQYTCIPSEPPL 1231 (1495)
Q Consensus 1153 l~~rl~~l~~~~~~~~~~~-~~~~~~~~~~~~~~gl~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~E~~~ 1231 (1495)
.......+..+...++.++ ......|.++.|.+..++++...+...+..+...+.++.....+.+|+.++++.|+|.+.
T Consensus 379 ~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~ 458 (710)
T TIGR03796 379 LGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLL 458 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccc
Confidence 6665555554433333332 233457889999998899999999999999999999999999999999999988776532
Q ss_pred cccc--C-CCCCCCCCcceEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEE
Q 000452 1232 EIEE--S-RPNHSWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILI 1308 (1495)
Q Consensus 1232 ~~~~--~-~~~~~wp~~g~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~I 1308 (1495)
.... . ...+.++..|.|+|+||+|+|+++.+++|+|+||+|+|||+|||||+||||||||+++|+|+++|++|+|.+
T Consensus 459 ~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~i 538 (710)
T TIGR03796 459 EEEEAPAAGSEPSPRLSGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILF 538 (710)
T ss_pred ccccccccccccCCCCCCeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 2100 0 011113456899999999999876677999999999999999999999999999999999999999999999
Q ss_pred cCEeCCCCCHHHHhcccEEEcccCcCCCCcHHHhcCCCC-CCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCc
Q 000452 1309 DGIDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNVDPLE-EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSM 1387 (1495)
Q Consensus 1309 DG~dI~~i~l~~LR~~isiIpQdp~LF~GTIR~NLdp~~-~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~ 1387 (1495)
||+|+++++.+++|++++||||||++|+|||||||..++ +++|+++++|++.+++++++.++|+|+||.++|+|.||||
T Consensus 539 dg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSG 618 (710)
T TIGR03796 539 DGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSG 618 (710)
T ss_pred CCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCH
Confidence 999999999999999999999999999999999998764 6899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhccCEEEEEeCcEEEEecChh
Q 000452 1388 GQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPR 1467 (1495)
Q Consensus 1388 GQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~ivE~gsp~ 1467 (1495)
||||||+||||++++|+|||||||||+||++||+.|.+.|++ .++|+|+||||++++.+||||+|||+|+|+|.|+|+
T Consensus 619 GQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~ 696 (710)
T TIGR03796 619 GQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHE 696 (710)
T ss_pred HHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHH
Confidence 999999999999999999999999999999999999999987 489999999999999999999999999999999999
Q ss_pred HHhhcCCChHHHHH
Q 000452 1468 KLLENKSSSFSQLV 1481 (1495)
Q Consensus 1468 ~Ll~~~~s~f~~lv 1481 (1495)
+|+++ ++.|++|+
T Consensus 697 ~Ll~~-~~~y~~l~ 709 (710)
T TIGR03796 697 ELWAV-GGAYARLI 709 (710)
T ss_pred HHHHc-CCcHHHHh
Confidence 99975 68899986
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-77 Score=779.97 Aligned_cols=560 Identities=22% Similarity=0.277 Sum_probs=464.5
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhcccCCCCCCCcc-hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 913 FSVYWKYITAAYGGVLVPFILLAQTLFQILQIASNYWIAWATPASKDIKPRVT-GSMLLIVFVALAFGSSFCILARSTLL 991 (1495)
Q Consensus 913 ~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~-~~~~~~~y~~l~~~~~~~~~~~~~~~ 991 (1495)
++.++.|++...+. +..++++.++..++.++.++++....+..... .... ...+..+++++.++..++.+++.++.
T Consensus 144 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (708)
T TIGR01193 144 LLKFIPLITRQKKL--IVNIVIAAIIVTLISIAGSYYLQKIIDTYIPH-KMMGTLGIISIGLIIAYIIQQILSYIQIFLL 220 (708)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666654332 23344455667777888888888665432111 1111 12233344555566777888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHccCCcccccccccccchhHHhcchhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 992 ATAGYKTATLLFNKMHYCIFRAPMSFFDATPSGRIINRASTDQSAVDLSIPALIGSFAFSIIRVLGVIGVMSLVAWQVFI 1071 (1495)
Q Consensus 992 ~~~~~~~s~~l~~~ll~~ll~ap~~ffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 1071 (1495)
...+.+....++.++++++++.|+.||+++++|++++|++ |.+.+...+...+..++..++.+++.++++++++|++++
T Consensus 221 ~~~~~~~~~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l 299 (708)
T TIGR01193 221 NVLGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLFL 299 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 9999999999999999999999999999999999999998 788777777666666667777777777888889999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcchHHHHhhccHHHHHHHHHHHHHHhhchHHHHHHHHH
Q 000452 1072 VFIPVIATCIWYQQYYISSARELSRLVGVCKAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGYSRPTFHVAAAME 1151 (1495)
Q Consensus 1072 v~ip~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~ 1151 (1495)
+++..++++..+...+.+..++..+......+...+++.|+++|+.|||+|+.|+++.+++.+..+...+..+.......
T Consensus 300 i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (708)
T TIGR01193 300 LSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQ 379 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766666666667777777888888888889999999999999999999999999999998888877776666554444
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCCCC
Q 000452 1152 WLGFRLDMLSNITFAFSLVF-LISIPKGFIDPAIAGLAVTYGLTLNNLQAMLIWLACQMENKIISVERIFQYTCIPSEPP 1230 (1495)
Q Consensus 1152 wl~~rl~~l~~~~~~~~~~~-~~~~~~~~~~~~~~gl~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~E~~ 1230 (1495)
+......++..+...+++++ ......|.++.|.+..+.++...+...+..+...+.+++....+++|+.++++.|+|.+
T Consensus 380 ~~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~ 459 (708)
T TIGR01193 380 GQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFI 459 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 43333333332222222211 23334788999999888999999999999999999999999999999999998887653
Q ss_pred CccccCCCCCCCCCcceEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcC
Q 000452 1231 LEIEESRPNHSWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDG 1310 (1495)
Q Consensus 1231 ~~~~~~~~~~~wp~~g~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG 1310 (1495)
... .....++..|.|+|+||+|+|+++ +++|+|+||+|+|||+|||||+||||||||+++|+|+++|++|+|+|||
T Consensus 460 ~~~---~~~~~~~~~~~I~~~~vsf~y~~~-~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg 535 (708)
T TIGR01193 460 NKK---KRTELNNLNGDIVINDVSYSYGYG-SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNG 535 (708)
T ss_pred ccc---cccCCCCCCCcEEEEEEEEEcCCC-CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECC
Confidence 211 111234457899999999999744 5699999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCHHHHhcccEEEcccCcCCCCcHHHhcCCC--CCCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCch
Q 000452 1311 IDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNVDPL--EEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMG 1388 (1495)
Q Consensus 1311 ~dI~~i~l~~LR~~isiIpQdp~LF~GTIR~NLdp~--~~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~G 1388 (1495)
+|+++++.+++|++|+||||||+||+|||||||... .+++|+++++|++.+++++++.++|+||||.++|+|.+||||
T Consensus 536 ~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgG 615 (708)
T TIGR01193 536 FSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGG 615 (708)
T ss_pred EEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHH
Confidence 999999999999999999999999999999999875 468999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhccCEEEEEeCcEEEEecChhH
Q 000452 1389 QRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRK 1468 (1495)
Q Consensus 1389 QrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~ivE~gsp~~ 1468 (1495)
||||++||||++++|+|||||||||+||++|++.|++.|++. +++|+|+||||++++..||+|+||++|+++|.|+|++
T Consensus 616 QrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~ 694 (708)
T TIGR01193 616 QKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDE 694 (708)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999999999999999974 7899999999999999999999999999999999999
Q ss_pred HhhcCCChHHHHHH
Q 000452 1469 LLENKSSSFSQLVA 1482 (1495)
Q Consensus 1469 Ll~~~~s~f~~lv~ 1482 (1495)
|+++ +|.|++|++
T Consensus 695 L~~~-~~~y~~l~~ 707 (708)
T TIGR01193 695 LLDR-NGFYASLIH 707 (708)
T ss_pred HHhc-CCcHHHHhh
Confidence 9975 689999875
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-76 Score=758.23 Aligned_cols=546 Identities=24% Similarity=0.346 Sum_probs=452.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHhhcccCCCCCCCcchh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 932 ILLAQTLFQILQIASNYWIAWATPASKDIKPRVTGS---MLLIVFVALAFGSSFCILARSTLLATAGYKTATLLFNKMHY 1008 (1495)
Q Consensus 932 ~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~---~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~ 1008 (1495)
.+++.++..++.++.++++.+..+...... ..... .++.+++++.++..++.+.+.++....+.+...+++.++++
T Consensus 28 ~~~~~~~~~~~~~~~p~~~~~iid~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~ 106 (592)
T PRK10790 28 AVLMLWVAAAAEVSGPLLISYFIDNMVAKG-NLPLGLVAGLAAAYVGLQLLAAGLHYAQSLLFNRAAVGVVQQLRTDVMD 106 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456667777777887776554211101 11111 12233444455666677788888888999999999999999
Q ss_pred HHccCCcccccccccccchhHHhcchhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 1009 CIFRAPMSFFDATPSGRIINRASTDQSAVDLSIPALIGSFAFSIIRVLGVIGVMSLVAWQVFIVFIPVIATCIWYQQYYI 1088 (1495)
Q Consensus 1009 ~ll~ap~~ffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~ip~~~~~~~~~~~y~ 1088 (1495)
+++++|+++|+..+.|++++|+++|++.++..+...+..++..++.+++.++++++.+|++.++++..+++.+.+...+.
T Consensus 107 ~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~i~~~~~~~~~ 186 (592)
T PRK10790 107 AALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMALVAIMIFPAVLVVMVIYQ 186 (592)
T ss_pred HHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888888899999999887665544444444444445
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHhhcchHHHHhhccHHHHHHHHHHHHHHhhchHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 000452 1089 SSARELSRLVGVCKAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGYSRPTFHVAAAMEWL-GFRLDMLSNITFAF 1167 (1495)
Q Consensus 1089 ~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl-~~rl~~l~~~~~~~ 1167 (1495)
+..+...+......+...+++.|+++|+.+||+|+.|+++.+++.+..+...+..+.......+. .....++..+...+
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (592)
T PRK10790 187 RYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLLRPLLSLFSALILCG 266 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666666677888999999999999999999999999999888777666555444333332 22233333322222
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCCCCCccccCCCCCCCCCcce
Q 000452 1168 SLVFLISIPKGFIDPAIAGLAVTYGLTLNNLQAMLIWLACQMENKIISVERIFQYTCIPSEPPLEIEESRPNHSWPSHGK 1247 (1495)
Q Consensus 1168 ~~~~~~~~~~~~~~~~~~gl~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~ 1247 (1495)
+.++......|.++.|.+..++.|...+..++..+...+.++++...+.+|+.++++.+++++.. ...++..+.
T Consensus 267 ~~~~~~~~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~------~~~~~~~~~ 340 (592)
T PRK10790 267 LLMLFGFSASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYGN------DDRPLQSGR 340 (592)
T ss_pred HHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCC------CccCCCCCe
Confidence 11111123578899999999999999999999999999999999999999999999866543211 112334578
Q ss_pred EEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccEE
Q 000452 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSI 1327 (1495)
Q Consensus 1248 I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~isi 1327 (1495)
|+|+||+|+|+++ +++|+|+||+|+|||++||||+||||||||+++|+|+++|++|+|.+||.|+++++.+++|++|+|
T Consensus 341 i~~~~v~f~y~~~-~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~ 419 (592)
T PRK10790 341 IDIDNVSFAYRDD-NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAM 419 (592)
T ss_pred EEEEEEEEEeCCC-CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEE
Confidence 9999999999754 569999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcccCcCCCCcHHHhcCCCCCCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCeEE
Q 000452 1328 IPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILM 1407 (1495)
Q Consensus 1328 IpQdp~LF~GTIR~NLdp~~~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALLr~~~ILi 1407 (1495)
|||||.+|+||||+||.++++++|+++++|+++++++++++++|+||||.++|+|.|||||||||++|||||+++|+|||
T Consensus 420 v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~ill 499 (592)
T PRK10790 420 VQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILI 499 (592)
T ss_pred EccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEE
Confidence 99999999999999999888899999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhccCEEEEEeCcEEEEecChhHHhhcCCChHHHHHHHHhh
Q 000452 1408 LDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSFSQLVAEYTQ 1486 (1495)
Q Consensus 1408 LDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~ivE~gsp~~Ll~~~~s~f~~lv~~~~~ 1486 (1495)
||||||+||++|++.|++.|++..++||+|+||||++++..||+|++|++|+++|.|+|++|+++ ++.|++|+++...
T Consensus 500 lDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~~~-~~~y~~l~~~~~~ 577 (592)
T PRK10790 500 LDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAA-QGRYWQMYQLQLA 577 (592)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHHhC-CCHHHHHHHHHhh
Confidence 99999999999999999999999889999999999999999999999999999999999999976 5999999986644
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-76 Score=751.57 Aligned_cols=544 Identities=21% Similarity=0.287 Sum_probs=463.2
Q ss_pred HHHHHHHHHHhhHHHHHhhcccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 000452 935 AQTLFQILQIASNYWIAWATPASKDIKPRVTGSMLLIVFVALAFGSSFCILARSTLLATAGYKTATLLFNKMHYCIFRAP 1014 (1495)
Q Consensus 935 ~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~ll~ap 1014 (1495)
+.++..+...+.+++++...+.............+...++++.++..++.+++.++....+.+....++..+++++++.|
T Consensus 33 ~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~ 112 (582)
T PRK11176 33 ALILNAASDTFMLSLLKPLLDDGFGKADRSVLKWMPLVVIGLMILRGITSFISSYCISWVSGKVVMTMRRRLFGHMMGMP 112 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 33444445555666666443321111110011122233444566677777888888888899999999999999999999
Q ss_pred cccccccccccchhHHhcchhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 1015 MSFFDATPSGRIINRASTDQSAVDLSIPALIGSFAFSIIRVLGVIGVMSLVAWQVFIVFIPVIATCIWYQQYYISSAREL 1094 (1495)
Q Consensus 1015 ~~ffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~ip~~~~~~~~~~~y~~~~r~l 1094 (1495)
..+|++...|++++|+++|++.+...+...+..++..++.+++.++++++.+|+++++++..+++.+++..++.+..++.
T Consensus 113 ~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~ 192 (582)
T PRK11176 113 VSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSLILIVIAPIVSIAIRVVSKRFRNI 192 (582)
T ss_pred HHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988899999999999999999999999988877766666666666666666777
Q ss_pred HHHHHHhhhhHHHHHHHhhcchHHHHhhccHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 000452 1095 SRLVGVCKAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGYSRPTFHVAAAMEWLGFRLDMLSNITFAFSLVF-LI 1173 (1495)
Q Consensus 1095 ~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~~~~~~~~~~-~~ 1173 (1495)
.+......+...+++.|.++|+.+||+|+.|+++.+++.+..+...+..........|.....+.++.+...+++.+ ..
T Consensus 193 ~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~ 272 (582)
T PRK11176 193 SKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISDPIIQLIASLALAFVLYAASF 272 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777788899999999999999999999999999999999999888888777777777776666665444333332 23
Q ss_pred HhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCCCCCccccCCCCCCCCCcceEEEeee
Q 000452 1174 SIPKGFIDPAIAGLAVTYGLTLNNLQAMLIWLACQMENKIISVERIFQYTCIPSEPPLEIEESRPNHSWPSHGKIDLRDL 1253 (1495)
Q Consensus 1174 ~~~~~~~~~~~~gl~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nv 1253 (1495)
....|.+++|.+.+++++...+...+..+...+..++....+.+|+.++++.++|.+.. . ....|..+.|+|+||
T Consensus 273 ~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~---~--~~~~~~~~~i~~~~v 347 (582)
T PRK11176 273 PSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEG---K--RVIERAKGDIEFRNV 347 (582)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCC---C--cCCCCCCCeEEEEEE
Confidence 34568899999999999999999999999999999999999999999999877653311 1 111234568999999
Q ss_pred eEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccEEEcccCc
Q 000452 1254 QVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSIIPQDPV 1333 (1495)
Q Consensus 1254 ~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~isiIpQdp~ 1333 (1495)
+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|+|+++|++|+|.+||+|+++++.+++|++|+||||||+
T Consensus 348 sf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~ 427 (582)
T PRK11176 348 TFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVH 427 (582)
T ss_pred EEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCce
Confidence 99998766779999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcHHHhcCCC--CCCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCeEEEEcC
Q 000452 1334 MFEGTVRSNVDPL--EEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEA 1411 (1495)
Q Consensus 1334 LF~GTIR~NLdp~--~~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALLr~~~ILiLDEa 1411 (1495)
+|+||||+||... ++++|+|+++++++++++++++++|+||||.+||+|.+||||||||++|||||+++|+|||||||
T Consensus 428 lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEp 507 (582)
T PRK11176 428 LFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEA 507 (582)
T ss_pred eecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECc
Confidence 9999999999854 35899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhccCEEEEEeCcEEEEecChhHHhhcCCChHHHHHHHH
Q 000452 1412 TASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSFSQLVAEY 1484 (1495)
Q Consensus 1412 TsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~ivE~gsp~~Ll~~~~s~f~~lv~~~ 1484 (1495)
||+||++|++.|.+.|++..+++|+|+||||++++.+||+|++|++|+|+|.|+|++|+++ ++.|++|+++.
T Consensus 508 tsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~~-~~~y~~l~~~~ 579 (582)
T PRK11176 508 TSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQ-NGVYAQLHKMQ 579 (582)
T ss_pred cccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHHHhC-CChHHHHHHHH
Confidence 9999999999999999998889999999999999999999999999999999999999976 58999998764
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-76 Score=765.63 Aligned_cols=553 Identities=22% Similarity=0.276 Sum_probs=460.7
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhcccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 913 FSVYWKYITAAYGGVLVPFILLAQTLFQILQIASNYWIAWATPASKDIKPRVTGSMLLIVFVALAFGSSFCILARSTLLA 992 (1495)
Q Consensus 913 ~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~~~~~ 992 (1495)
++.++.+++...+ .+..++++.++.+++.++.++.++...+.............+..+++++.++..++.+++.++..
T Consensus 135 ~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (694)
T TIGR03375 135 KHWFWSTLKESWP--LYRDVLIASLLINLLALASPLFVMNVYDRVVPNQAFETLWVLAIGVALAIVFDFVLKTLRSYFLD 212 (694)
T ss_pred chHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666654332 23334445566777778888887765542211111011122333444455667788888999999
Q ss_pred HHHHHHHHHHHHHHHHHHccCCcccccccccccchhHHhcchhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 993 TAGYKTATLLFNKMHYCIFRAPMSFFDATPSGRIINRASTDQSAVDLSIPALIGSFAFSIIRVLGVIGVMSLVAWQVFIV 1072 (1495)
Q Consensus 993 ~~~~~~s~~l~~~ll~~ll~ap~~ffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v 1072 (1495)
..+.+....++..+++++++.|++| ++.++|++++|+ +|++.+...+...+...+..++.+++.++++++++|+++++
T Consensus 213 ~~~~~~~~~l~~~~~~~ll~l~~~~-~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li 290 (694)
T TIGR03375 213 VAGKKADLILSAKLFERVLGLRMEA-RPASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPLVWV 290 (694)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCccc-CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 9999999999999999999999998 789999999999 79999999888887777777777878888889999998887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcchHHHHhhccHHHHHHHHHHHHHHhhchHHHHHHHHHH
Q 000452 1073 FIPVIATCIWYQQYYISSARELSRLVGVCKAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGYSRPTFHVAAAMEW 1152 (1495)
Q Consensus 1073 ~ip~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~w 1152 (1495)
.+..+++++.+..++.+..++..+......+...+++.|+++|+.+||+|+.|+.+.+++.+..++..+..+.......+
T Consensus 291 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (694)
T TIGR03375 291 PLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNL 370 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76666666666666677777777777788889999999999999999999999999999999888887777766665555
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCCCCC
Q 000452 1153 LGFRLDMLSNITFAFSLVF-LISIPKGFIDPAIAGLAVTYGLTLNNLQAMLIWLACQMENKIISVERIFQYTCIPSEPPL 1231 (1495)
Q Consensus 1153 l~~rl~~l~~~~~~~~~~~-~~~~~~~~~~~~~~gl~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~E~~~ 1231 (1495)
......++..+...++.++ ......|.++.|.+-.++++...+...+..+...+.+++....+.+|+.++++.|+|.+.
T Consensus 371 ~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~ 450 (694)
T TIGR03375 371 ATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPE 450 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 5444444443332222222 233447889999988889999999999999999999999999999999999988776432
Q ss_pred ccccCCCCCCCCCcceEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCE
Q 000452 1232 EIEESRPNHSWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGI 1311 (1495)
Q Consensus 1232 ~~~~~~~~~~wp~~g~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~ 1311 (1495)
.. ......+..|.|+|+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.+||+
T Consensus 451 ~~---~~~~~~~~~~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~ 527 (694)
T TIGR03375 451 GT---RFLHRPRLQGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGV 527 (694)
T ss_pred CC---CCCCCCCccceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE
Confidence 11 111112346789999999999866667999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCHHHHhcccEEEcccCcCCCCcHHHhcCCCC-CCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHH
Q 000452 1312 DISLIGLHDLRTRLSIIPQDPVMFEGTVRSNVDPLE-EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQR 1390 (1495)
Q Consensus 1312 dI~~i~l~~LR~~isiIpQdp~LF~GTIR~NLdp~~-~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQr 1390 (1495)
|+++++++++|++++||||||++|+|||||||...+ +++|+|+++|++++++++++.++|+|+||.++|+|.|||||||
T Consensus 528 ~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQr 607 (694)
T TIGR03375 528 DIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQR 607 (694)
T ss_pred EhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHH
Confidence 999999999999999999999999999999998765 5899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhccCEEEEEeCcEEEEecChhHHh
Q 000452 1391 QLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLL 1470 (1495)
Q Consensus 1391 Qrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~ivE~gsp~~Ll 1470 (1495)
||++||||++++|+|||||||||+||++|++.|++.|++..+++|+|+||||++++.+||+|+||++|+++|.|+|+||+
T Consensus 608 QRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl 687 (694)
T TIGR03375 608 QAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVL 687 (694)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 99999999999999999999999999999999999999998999999999999999999999999999999999999998
Q ss_pred hc
Q 000452 1471 EN 1472 (1495)
Q Consensus 1471 ~~ 1472 (1495)
++
T Consensus 688 ~~ 689 (694)
T TIGR03375 688 EA 689 (694)
T ss_pred HH
Confidence 65
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-75 Score=741.78 Aligned_cols=560 Identities=19% Similarity=0.232 Sum_probs=452.9
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhcccCC-CCCC---CcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 915 VYWKYITAAYGGVLVPFILLAQTLFQILQIASNYWIAWATPASK-DIKP---RVTGSMLLIVFVALAFGSSFCILARSTL 990 (1495)
Q Consensus 915 ~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~-~~~~---~~~~~~~~~~y~~l~~~~~~~~~~~~~~ 990 (1495)
.+++|++...+. +.+.+++.++..++.++.++.+.|..+... ...+ ..........+.++.++..++.++..++
T Consensus 6 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (574)
T PRK11160 6 PFLKLYKRHWFM--LSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYGERLV 83 (574)
T ss_pred HHHHHHhhhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555543322 223333445556666666766666554210 0110 0001111223444556667777778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHccCCcccccccccccchhHHhcchhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 991 LATAGYKTATLLFNKMHYCIFRAPMSFFDATPSGRIINRASTDQSAVDLSIPALIGSFAFSIIRVLGVIGVMSLVAWQVF 1070 (1495)
Q Consensus 991 ~~~~~~~~s~~l~~~ll~~ll~ap~~ffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 1070 (1495)
....+.+....++.++++++++.|+.+|++.++|++++|+++|++.++..+...+..++..++.+++.++++++.+|++.
T Consensus 84 ~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 163 (574)
T PRK11160 84 SHDATFRVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTLA 163 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcchHHHHhhccHHHHHHHHHHHHHHhhchHHHHHHH
Q 000452 1071 IVFIPVIATC-IWYQQYYISSARELSRLVGVCKAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGYSRPTFHVAAA 1149 (1495)
Q Consensus 1071 ~v~ip~~~~~-~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~ 1149 (1495)
++++..+++. ..+..++.+..+...+......+.+.+.+.|+++|+.+||+|+.|+++.+++.+..+++.+........
T Consensus 164 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 243 (574)
T PRK11160 164 LTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANL 243 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7664444333 334455666667777777788889999999999999999999999999999999998888877776666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCC
Q 000452 1150 MEWLGFRLDMLSNITFAFSLVFLISIPKGFIDPAIAGLAVTYG-LTLNNLQAMLIWLACQMENKIISVERIFQYTCIPSE 1228 (1495)
Q Consensus 1150 ~~wl~~rl~~l~~~~~~~~~~~~~~~~~~~~~~~~~gl~l~~~-~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~E 1228 (1495)
..+.....+++..+..+.+..+......|.++.|....++.|. +.....+..+...+..+.....|.+|+.++++.|+|
T Consensus 244 ~~~~~~~~~~~~~~~~~~i~~~g~~~~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~ 323 (574)
T PRK11160 244 TGLSQALMILANGLTVVLMLWLAAGGVGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPE 323 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 6666555555554443333333222235666776655555554 333445566677788888899999999999987665
Q ss_pred CCCccccCCCCCCCCCcceEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEE
Q 000452 1229 PPLEIEESRPNHSWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILI 1308 (1495)
Q Consensus 1229 ~~~~~~~~~~~~~wp~~g~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~I 1308 (1495)
.+.. ...+ ..+..|.|+|+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|.|+++|++|+|.+
T Consensus 324 ~~~~--~~~~--~~~~~~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i 399 (574)
T PRK11160 324 VTFP--TTST--AAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILL 399 (574)
T ss_pred CCCC--cccC--CCCCCCeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence 3211 0111 11345789999999999765557999999999999999999999999999999999999999999999
Q ss_pred cCEeCCCCCHHHHhcccEEEcccCcCCCCcHHHhcCCC-CCCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCc
Q 000452 1309 DGIDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNVDPL-EEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSM 1387 (1495)
Q Consensus 1309 DG~dI~~i~l~~LR~~isiIpQdp~LF~GTIR~NLdp~-~~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~ 1387 (1495)
||+|+++++.+++|++|++|||||++|+|||||||... .+.+|+++++|++++++++++.+ |+||||.+||+|.+|||
T Consensus 400 ~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSg 478 (574)
T PRK11160 400 NGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSG 478 (574)
T ss_pred CCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCH
Confidence 99999999999999999999999999999999999865 46899999999999999999999 99999999999999999
Q ss_pred hHHHHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhccCEEEEEeCcEEEEecChh
Q 000452 1388 GQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPR 1467 (1495)
Q Consensus 1388 GQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~ivE~gsp~ 1467 (1495)
|||||++||||++++|+|||||||||++|++|++.|++.|++..+++|+|+||||++++.+||+|++|++|+++|.|+|+
T Consensus 479 GqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~~ 558 (574)
T PRK11160 479 GEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQ 558 (574)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCHH
Confidence 99999999999999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred HHhhcCCChHHHHHH
Q 000452 1468 KLLENKSSSFSQLVA 1482 (1495)
Q Consensus 1468 ~Ll~~~~s~f~~lv~ 1482 (1495)
||+++ ++.|++|++
T Consensus 559 ~l~~~-~g~y~~l~~ 572 (574)
T PRK11160 559 ELLAQ-QGRYYQLKQ 572 (574)
T ss_pred HHHhc-CcHHHHHHh
Confidence 99975 689999986
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-74 Score=737.45 Aligned_cols=547 Identities=23% Similarity=0.319 Sum_probs=475.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHhhcccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 000452 932 ILLAQTLFQILQIASNYWIAWATPASKDIKPRVTGSMLLIVFVALAFGSSFCILARSTLLATAGYKTATLLFNKMHYCIF 1011 (1495)
Q Consensus 932 ~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~ll 1011 (1495)
.+++.++..++....+++++...+.............+...++++.++..++.+++.++....+.+....++..++++++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~~~ 98 (571)
T TIGR02203 19 AGVAMILVAATESTLAALLKPLLDDGFGGRDRSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVSNKVVRDIRVRMFEKLL 98 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555666666677665433211111111112223445667777778888899999999999999999999999999
Q ss_pred cCCcccccccccccchhHHhcchhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 1012 RAPMSFFDATPSGRIINRASTDQSAVDLSIPALIGSFAFSIIRVLGVIGVMSLVAWQVFIVFIPVIATCIWYQQYYISSA 1091 (1495)
Q Consensus 1012 ~ap~~ffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~ip~~~~~~~~~~~y~~~~ 1091 (1495)
+.|.++|++.+.|++++|+++|++.++..+...+..++..++.+++.++++++++|+++++++..+++..++..++.+..
T Consensus 99 ~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~l~~~~l~~~~~~~~~~~~ 178 (571)
T TIGR02203 99 GLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRVSKRL 178 (571)
T ss_pred cCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988888888888888888888
Q ss_pred HHHHHHHHHhhhhHHHHHHHhhcchHHHHhhccHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 1092 RELSRLVGVCKAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGYSRPTFHVAAAMEWLGFRLDMLSNITFAFSLVF 1171 (1495)
Q Consensus 1092 r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~~~~~~~~~~ 1171 (1495)
++..+......++..+.+.|+++|+.+||+++.++++.+++.+..+...+..........+.....+++..+...+.+++
T Consensus 179 ~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (571)
T TIGR02203 179 RRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQLIASLALAVVLFI 258 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888999999999999999999999999999999999999999888887777777777666666655443333332
Q ss_pred -HHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCCCCCccccCCCCCCCCCcceEEE
Q 000452 1172 -LISIPKGFIDPAIAGLAVTYGLTLNNLQAMLIWLACQMENKIISVERIFQYTCIPSEPPLEIEESRPNHSWPSHGKIDL 1250 (1495)
Q Consensus 1172 -~~~~~~~~~~~~~~gl~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~f 1250 (1495)
......|.+++|.+..++++...+..++..+...+.++.....+.+|+.++.+.++|.+.. ..+.. +..+.|++
T Consensus 259 g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~---~~~~~--~~~~~i~~ 333 (571)
T TIGR02203 259 ALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTG---TRAIE--RARGDVEF 333 (571)
T ss_pred HHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC---CCCCC--CCCCeEEE
Confidence 2334578899999999999999999999999999999999999999999999876654321 11111 23568999
Q ss_pred eeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccEEEcc
Q 000452 1251 RDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSIIPQ 1330 (1495)
Q Consensus 1251 ~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~isiIpQ 1330 (1495)
+||+|+|+++.+++|+|+||+|++||+|+|+|+||||||||+++|.|+++|++|+|.+||+|+++++.+++|++++|+||
T Consensus 334 ~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q 413 (571)
T TIGR02203 334 RNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQ 413 (571)
T ss_pred EEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEcc
Confidence 99999998765679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcCCCCcHHHhcCCCC--CCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCeEEE
Q 000452 1331 DPVMFEGTVRSNVDPLE--EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILML 1408 (1495)
Q Consensus 1331 dp~LF~GTIR~NLdp~~--~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALLr~~~ILiL 1408 (1495)
||++|+||||+||..+. +++|++++++++++++++++.++|+||||.++|+|.+||||||||+|||||++++|+||+|
T Consensus 414 ~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illL 493 (571)
T TIGR02203 414 DVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILIL 493 (571)
T ss_pred CcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999999998663 6999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhccCEEEEEeCcEEEEecChhHHhhcCCChHHHHHHHH
Q 000452 1409 DEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSFSQLVAEY 1484 (1495)
Q Consensus 1409 DEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~ivE~gsp~~Ll~~~~s~f~~lv~~~ 1484 (1495)
|||||+||.+|++.|.+.|++..+++|+|+||||++.+..||+|++|++|+++|.|+|++++++ ++.|++++.+.
T Consensus 494 DEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~~~-~~~~~~~~~~~ 568 (571)
T TIGR02203 494 DEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLAR-NGLYAQLHNMQ 568 (571)
T ss_pred eCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHHHc-CCHHHHHHHHh
Confidence 9999999999999999999999899999999999999999999999999999999999999976 58999987754
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-74 Score=747.82 Aligned_cols=564 Identities=23% Similarity=0.293 Sum_probs=471.2
Q ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhcccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 912 EFSVYWKYITAAYGGVLVPFILLAQTLFQILQIASNYWIAWATPASKDIKPRVTGSMLLIVFVALAFGSSFCILARSTLL 991 (1495)
Q Consensus 912 ~~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~~~~ 991 (1495)
+++.++.+++...+. +..++++.++..++.++.++.+....+.............+..+++++.++..++.+++.++.
T Consensus 126 ~~~~~~~~~~~~~~~--~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~ 203 (694)
T TIGR01846 126 GFSWFIPAIIRYRKQ--FREVLLISLALQLFALVTPLLFQVVIDKVLVHRGLSTLSVLALAMLAVAIFEPALGGLRTYLF 203 (694)
T ss_pred cHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666543322 223344456666777778887776554221111111122334455666667788888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHccCCcccccccccccchhHHhcchhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 992 ATAGYKTATLLFNKMHYCIFRAPMSFFDATPSGRIINRASTDQSAVDLSIPALIGSFAFSIIRVLGVIGVMSLVAWQVFI 1071 (1495)
Q Consensus 992 ~~~~~~~s~~l~~~ll~~ll~ap~~ffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 1071 (1495)
...+.+....++.++++++++.|+.||++.++|++++|+ +|++.+...+...+..++..++.+++.++++++++|++++
T Consensus 204 ~~~~~~~~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l 282 (694)
T TIGR01846 204 AHLTSRIDVELGARLYRHLLGLPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTG 282 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999 6999999988877777777777677778888999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcchHHHHhhccHHHHHHHHHHHHHHhhchHHHHHHHHH
Q 000452 1072 VFIPVIATCIWYQQYYISSARELSRLVGVCKAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGYSRPTFHVAAAME 1151 (1495)
Q Consensus 1072 v~ip~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~ 1151 (1495)
+++..++++..+..+..+..+...+......+...+++.|+++|+.+||+|+.|+.+.+++.+..+...+..+.......
T Consensus 283 i~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (694)
T TIGR01846 283 VVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGN 362 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77666666655555555555555555666778889999999999999999999999999999999988888877777777
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCCCC
Q 000452 1152 WLGFRLDMLSNITFAFSLVF-LISIPKGFIDPAIAGLAVTYGLTLNNLQAMLIWLACQMENKIISVERIFQYTCIPSEPP 1230 (1495)
Q Consensus 1152 wl~~rl~~l~~~~~~~~~~~-~~~~~~~~~~~~~~gl~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~E~~ 1230 (1495)
+......++..+..++..++ ......|.++.|.+..+.++...+..++..+...+.+++....+.+|+.++++.|+|.+
T Consensus 363 ~~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~ 442 (694)
T TIGR01846 363 IAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPR 442 (694)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcc
Confidence 76666666655444333333 23344788999998888899999999999999999999999999999999998877643
Q ss_pred CccccCCCCCCCCCcceEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcC
Q 000452 1231 LEIEESRPNHSWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDG 1310 (1495)
Q Consensus 1231 ~~~~~~~~~~~wp~~g~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG 1310 (1495)
.. ...+. -+..|.|+|+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|.|+++|++|+|.|||
T Consensus 443 ~~--~~~~~--~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg 518 (694)
T TIGR01846 443 SA--GLAAL--PELRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDG 518 (694)
T ss_pred CC--CCCCC--CCCCCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC
Confidence 21 11111 123578999999999987767799999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCHHHHhcccEEEcccCcCCCCcHHHhcCCC-CCCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchH
Q 000452 1311 IDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNVDPL-EEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQ 1389 (1495)
Q Consensus 1311 ~dI~~i~l~~LR~~isiIpQdp~LF~GTIR~NLdp~-~~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQ 1389 (1495)
+|+++++.+++|++++||||||.+|+|||||||... .+++|+++++|++++++++++.++|+||||.++|+|.||||||
T Consensus 519 ~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq 598 (694)
T TIGR01846 519 VDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQ 598 (694)
T ss_pred EehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHH
Confidence 999999999999999999999999999999999865 4789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhccCEEEEEeCcEEEEecChhHH
Q 000452 1390 RQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKL 1469 (1495)
Q Consensus 1390 rQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~ivE~gsp~~L 1469 (1495)
|||++||||++++|+|||||||||+||++|++.+.+.|++..+++|+|+||||++++..||+|++|++|+|+|.|+|++|
T Consensus 599 ~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l 678 (694)
T TIGR01846 599 RQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEEL 678 (694)
T ss_pred HHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred hhcCCChHHHHHHH
Q 000452 1470 LENKSSSFSQLVAE 1483 (1495)
Q Consensus 1470 l~~~~s~f~~lv~~ 1483 (1495)
+++ ++.|++|+++
T Consensus 679 ~~~-~~~y~~l~~~ 691 (694)
T TIGR01846 679 LAL-QGLYARLWQQ 691 (694)
T ss_pred HHc-CChHHHHHHh
Confidence 985 5999999875
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-74 Score=680.80 Aligned_cols=513 Identities=23% Similarity=0.301 Sum_probs=444.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccccccccccchhHHhcchhHHHhhhHHHH
Q 000452 966 GSMLLIVFVALAFGSSFCILARSTLLATAGYKTATLLFNKMHYCIFRAPMSFFDATPSGRIINRASTDQSAVDLSIPALI 1045 (1495)
Q Consensus 966 ~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~ll~ap~~ffd~tp~G~ilnR~s~D~~~vd~~l~~~l 1045 (1495)
...++..++++.++..++.+.+..+....+.++...++.++++++.+.+..+-...|+|.+.+.++.-++.++..+...+
T Consensus 39 l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryL 118 (559)
T COG4988 39 LLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYL 118 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 34456666677777788888888888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcchHHHHhh
Q 000452 1046 GSFAFSIIRVLGVIGVMSLVAWQVFIV---FIPVIATCIWYQQYYISSARELSRLVGVCKAPLIQHFAETVSGSTTIRSF 1122 (1495)
Q Consensus 1046 ~~~~~~~~~~~~~~~~~~~~~~~~~~v---~ip~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf 1122 (1495)
..++.+.+..+.+++.+++.+|...++ ..|++++++++. ...++...+....+...+.+||-+.++|+.|+|+|
T Consensus 119 Pq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMilv---g~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f 195 (559)
T COG4988 119 PQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMILV---GLAAKDASEKQFSALARLSGHFLDRLRGLETLRAF 195 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHh
Confidence 999999999999999999999986654 456666665543 33445555566677788999999999999999999
Q ss_pred ccHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcC-CCCCHHHHHHHHHHHHHHHHHHH
Q 000452 1123 DQESRFIDTNMELMDGYSRPTFHVAAAMEWLGFRLDMLSNITFAFSLVFLIS-IPK-GFIDPAIAGLAVTYGLTLNNLQA 1200 (1495)
Q Consensus 1123 ~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~~~~~~~~~~~~~-~~~-~~~~~~~~gl~l~~~~~l~~~~~ 1200 (1495)
+..+...++..+...++.+..+......---+..+|++..+.++.++++... +.. |.++-...-+++..+--+..++.
T Consensus 196 ~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAlvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR 275 (559)
T COG4988 196 GRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLR 275 (559)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHH
Confidence 9999999999999998888888777776666778888888877776666432 333 55665555556666666777777
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHhcCCCCCCCccccCCCCCCCCCcceEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEE
Q 000452 1201 MLIWLACQMENKIISVERIFQYTCIPSEPPLEIEESRPNHSWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGI 1280 (1495)
Q Consensus 1201 ~~~~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgI 1280 (1495)
.+...+..-.+...+.+.+..+.+.|.+.+...+ .....|....+|+.+|++++|+++. ++++|+||+++||+++||
T Consensus 276 ~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~--~~~~~~~~~~ei~~~~l~~~y~~g~-~~l~~l~~t~~~g~~tal 352 (559)
T COG4988 276 DLGSFFHAAAAGEAAADKLFTLLESPVATPGSGE--KAEVANEPPIEISLENLSFRYPDGK-PALSDLNLTIKAGQLTAL 352 (559)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCcc--ccccccCCCceeeecceEEecCCCC-cccCCceeEecCCcEEEE
Confidence 7877888777788889999999987766443211 1123343445677779999998765 799999999999999999
Q ss_pred EcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccEEEcccCcCCCCcHHHhcCCCC-CCCHHHHHHHHH
Q 000452 1281 VGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNVDPLE-EYTDEQIWEALD 1359 (1495)
Q Consensus 1281 VGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~isiIpQdp~LF~GTIR~NLdp~~-~~sd~ei~~aL~ 1359 (1495)
||+||||||||+++|+|+.+|++|+|.+||+|..+++.+++|+++++|||+|++|+|||||||...+ +.+||||++|++
T Consensus 353 vG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~ 432 (559)
T COG4988 353 VGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALD 432 (559)
T ss_pred ECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998765 589999999999
Q ss_pred HcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Q 000452 1360 KCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITI 1439 (1495)
Q Consensus 1360 ~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~I 1439 (1495)
++++.++++. |+||||.+||+|.+|||||+|||+||||++++++++++|||||+||.|||+.|++.|.+.++++|||+|
T Consensus 433 ~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~i 511 (559)
T COG4988 433 QAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVI 511 (559)
T ss_pred HhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEE
Confidence 9999999999 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCchhhhccCEEEEEeCcEEEEecChhHHhhcCCChHHHHHHHHhh
Q 000452 1440 AHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSFSQLVAEYTQ 1486 (1495)
Q Consensus 1440 AHRl~ti~~~DrIlVL~~G~ivE~gsp~~Ll~~~~s~f~~lv~~~~~ 1486 (1495)
|||++.+.++|+|+|||+|+++|.|+|++|.++ ++.|++|+++...
T Consensus 512 tHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~-~~~y~~l~~~q~~ 557 (559)
T COG4988 512 THRLEDAADADRIVVLDNGRLVEQGTHEELSEK-QGLYANLLKQQEG 557 (559)
T ss_pred EcChHHHhcCCEEEEecCCceeccCCHHHHhhc-CcHHHHHHHHHhc
Confidence 999999999999999999999999999999975 6899999987543
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-75 Score=740.12 Aligned_cols=514 Identities=23% Similarity=0.314 Sum_probs=433.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccccccccccchhHHhcchhHHHhhhHHHH
Q 000452 966 GSMLLIVFVALAFGSSFCILARSTLLATAGYKTATLLFNKMHYCIFRAPMSFFDATPSGRIINRASTDQSAVDLSIPALI 1045 (1495)
Q Consensus 966 ~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~ll~ap~~ffd~tp~G~ilnR~s~D~~~vd~~l~~~l 1045 (1495)
...+.+.|+.++++..++.++....+.+.|.|...+++.+.++++||.+++|||++..|++..|+++|++.+.+.+...+
T Consensus 70 ~~~~~l~~~~lg~~~~~~~~~q~~c~~~~geRq~~riR~~yl~~iLrQdi~~fD~~~~g~~~~~l~~d~~~I~d~~geKv 149 (1228)
T KOG0055|consen 70 VSKVALYFVYLGVGVFISGFIQVSCWMRTGERQTARIRSKYLKAILRQDIGWFDTNSTGELVTRLSDDIELIQDAIGEKV 149 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccceeecccccceEEEecCcHHHHHHHHHHHH
Confidence 44567778888888888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcchHHHHhhccH
Q 000452 1046 GSFAFSIIRVLGVIGVMSLVAWQVFIVFIPVIATCIWYQQYYISSARELSRLVGVCKAPLIQHFAETVSGSTTIRSFDQE 1125 (1495)
Q Consensus 1046 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~ip~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e 1125 (1495)
..++..+..+++.+++.++..|+++++.+++.++.......+.+..-.+...+....+..-+...|++.+++|+.||+.|
T Consensus 150 g~~i~~~~~fi~g~ii~F~~~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq 229 (1228)
T KOG0055|consen 150 GNFIQLLATFIAGFVIGFYYGWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGE 229 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCc
Confidence 99999999999999999999999999988887777766666666666666666777778888999999999999999999
Q ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH-HHhcCCCCCHHHHHHHHHHHHHHHHHHHH
Q 000452 1126 SRFIDTNMELMDGYSRPTFHVAAAMEWLGFRLDMLSNIT---FAFSLVFL-ISIPKGFIDPAIAGLAVTYGLTLNNLQAM 1201 (1495)
Q Consensus 1126 ~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~~~---~~~~~~~~-~~~~~~~~~~~~~gl~l~~~~~l~~~~~~ 1201 (1495)
++..+++.+.++...+....... |.++-....-.++ .+...++. ..+..+..++|.+..++.+.+.-...+..
T Consensus 230 ~~e~~ry~~~L~~~~k~gi~~g~---~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgq 306 (1228)
T KOG0055|consen 230 KKEIERYSKALENALKFGIKKGL---FKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQ 306 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhc
Confidence 99999999988877766544322 2222222221111 11222222 22234456666554444444444444444
Q ss_pred HHHHHHHHHHHhhHHHHHHHHhcCCCCCCCccccCCCCCCCCCcceEEEeeeeEEeCCCC-CcceeeeeEEeeCCcEEEE
Q 000452 1202 LIWLACQMENKIISVERIFQYTCIPSEPPLEIEESRPNHSWPSHGKIDLRDLQVRYAPHM-PFVLRGISCTFPGEKKTGI 1280 (1495)
Q Consensus 1202 ~~~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nv~~~Y~~~~-~~vL~~Is~~I~~GekvgI 1280 (1495)
..-.+..+.+...|..+|.+.++..++-....+..++ .--.+|.|||+||+|+|+... .++|+|+||+|++||.||+
T Consensus 307 a~p~l~~f~~a~~aa~~I~~~i~~~~~i~~~~~~~~~--~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~val 384 (1228)
T KOG0055|consen 307 ASPHLSAFAKARAAAYRIFETIDRKPSIDPYSKGGRV--LSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVAL 384 (1228)
T ss_pred cccchHHHhccccchHHHHHHhcCCCCCCcccccCCc--ccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEE
Confidence 4555666777888999999987644332111111111 122479999999999997543 3699999999999999999
Q ss_pred EcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccEEEcccCcCCCCcHHHhcCCCC-CCCHHHHHHHHH
Q 000452 1281 VGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNVDPLE-EYTDEQIWEALD 1359 (1495)
Q Consensus 1281 VGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~isiIpQdp~LF~GTIR~NLdp~~-~~sd~ei~~aL~ 1359 (1495)
||+|||||||++++|.|+|+|++|+|+|||.||.+++.++||++||+|.|||+||++||+|||.... +.|++|+.+|++
T Consensus 385 VG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k 464 (1228)
T KOG0055|consen 385 VGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAK 464 (1228)
T ss_pred ECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998765 799999999999
Q ss_pred HcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Q 000452 1360 KCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITI 1439 (1495)
Q Consensus 1360 ~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~I 1439 (1495)
.++.++||.++|+|+||.|||+|..||||||||+||||||+|+|+||+||||||+||+++|+.+|++|++..+++|.|+|
T Consensus 465 ~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivV 544 (1228)
T KOG0055|consen 465 AANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVV 544 (1228)
T ss_pred HccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCchhhhccCEEEEEeCcEEEEecChhHHhhcCCChHHHHHHHHh
Q 000452 1440 AHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSFSQLVAEYT 1485 (1495)
Q Consensus 1440 AHRl~ti~~~DrIlVL~~G~ivE~gsp~~Ll~~~~s~f~~lv~~~~ 1485 (1495)
||||+||+++|+|+||++|+|+|.|+|+||++++ |.|++||+...
T Consensus 545 aHRLStIrnaD~I~v~~~G~IvE~G~h~ELi~~~-G~Y~~lv~~Q~ 589 (1228)
T KOG0055|consen 545 AHRLSTIRNADKIAVMEEGKIVEQGTHDELIALG-GIYSSLVRLQE 589 (1228)
T ss_pred eeehhhhhccCEEEEEECCEEEEecCHHHHHhcc-chHHHHHHHHh
Confidence 9999999999999999999999999999999986 99999997654
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-73 Score=720.50 Aligned_cols=507 Identities=22% Similarity=0.276 Sum_probs=416.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHhhcccCCCCCCCcchhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 932 ILLAQTLFQILQIASNYWIAWATPASKDIKPRVTGSML--LIVFVALAFGSSFCILARSTLLATAGYKTATLLFNKMHYC 1009 (1495)
Q Consensus 932 ~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~--~~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~ 1009 (1495)
.+++.++..++.++.++.+++..+..... .. ....+ +..++++.++..++.+++.++....+.+...+++.+++++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~id~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ 95 (529)
T TIGR02868 18 AILLGALALGSAVALLGVSAWLISRAAEM-PP-VLYLSVAAVAVRAFGIGRAVFRYLERLVGHDAALRSLGRLRVRVYDR 95 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556666777777777665422111 11 11111 1112234455566677777788888899999999999999
Q ss_pred HccCCcccccccccccchhHHhcchhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 000452 1010 IFRAPMSFFDATPSGRIINRASTDQSAVDLSIPALIGSFAFSIIRVLGVIGVMSLVAWQVFIVFIPVIATCIW-YQQYYI 1088 (1495)
Q Consensus 1010 ll~ap~~ffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~ip~~~~~~~-~~~~y~ 1088 (1495)
+++.|.+||++.++|++++|+++|++.++..+...+..++..++.+++.++++++.+|++.++++..++++.+ ...++.
T Consensus 96 ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~ 175 (529)
T TIGR02868 96 LARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAALVLAAGLLLAGFVAPLVSL 175 (529)
T ss_pred hhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998877655444433 334445
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHhhcchHHHHhhccHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 1089 SSARELSRLVGVCKAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGYSRPTFHVAAAMEWLGFRLDMLSNITFAFS 1168 (1495)
Q Consensus 1089 ~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~~~~~~~ 1168 (1495)
+..+...+......+.+.+++.|+++|+++||+|+.|+++.+++.+..+...+..........+......++..+...++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (529)
T TIGR02868 176 RAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLGAAAQLLAAGLAVLGA 255 (529)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666667778999999999999999999999999999999998888877776665555554444444443333322
Q ss_pred HHH-HHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCCCCCccccCCCCCCCCCcce
Q 000452 1169 LVF-LISIPKGFIDPAIAGLAVTYGLTLNNLQAMLIWLACQMENKIISVERIFQYTCIPSEPPLEIEESRPNHSWPSHGK 1247 (1495)
Q Consensus 1169 ~~~-~~~~~~~~~~~~~~gl~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~ 1247 (1495)
.++ ......|.++.|.+...+.|...+...+..+...+.++.....+.+|+.++++.++|.+... ...+...+|..+.
T Consensus 256 ~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~-~~~~~~~~~~~~~ 334 (529)
T TIGR02868 256 LWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEGV-VPAAGALGLGKPT 334 (529)
T ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCC-CCCCcccCCCCce
Confidence 222 22345678899998888899989999999999999999999999999999998776533211 1111123445678
Q ss_pred EEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccEE
Q 000452 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSI 1327 (1495)
Q Consensus 1248 I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~isi 1327 (1495)
|+|+||+|+|+++. ++|+|+||+|+|||++||||+||||||||+++|+|+++|++|+|.+||+|++++ .+++|++++|
T Consensus 335 I~~~~vsf~Y~~~~-~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~-~~~lr~~i~~ 412 (529)
T TIGR02868 335 LELRDLSFGYPGSP-PVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL-QDELRRRISV 412 (529)
T ss_pred EEEEEEEEecCCCC-ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH-HHHHHhheEE
Confidence 99999999997654 599999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred EcccCcCCCCcHHHhcCCC-CCCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCeE
Q 000452 1328 IPQDPVMFEGTVRSNVDPL-EEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKIL 1406 (1495)
Q Consensus 1328 IpQdp~LF~GTIR~NLdp~-~~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALLr~~~IL 1406 (1495)
|||||+||+|||||||... ++++|||+++|+++|+++|+|.++|+||||.|||+|.|||||||||+|||||++++|+||
T Consensus 413 V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~il 492 (529)
T TIGR02868 413 FAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPIL 492 (529)
T ss_pred EccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999999999999975 478999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCc
Q 000452 1407 MLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRI 1443 (1495)
Q Consensus 1407 iLDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl 1443 (1495)
|||||||+||++||+.|++.|++..+++|+|+||||+
T Consensus 493 iLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 493 LLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 9999999999999999999999998999999999996
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-72 Score=719.35 Aligned_cols=565 Identities=21% Similarity=0.283 Sum_probs=466.5
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhcccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 914 SVYWKYITAAYGGVLVPFILLAQTLFQILQIASNYWIAWATPASKDIKPRVTGSMLLIVFVALAFGSSFCILARSTLLAT 993 (1495)
Q Consensus 914 ~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~~~~~~ 993 (1495)
+.++.|++...+.. .+.+++.++..++.++.++.+....+..-..........++.+++++.++..++.+.+.++...
T Consensus 7 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (576)
T TIGR02204 7 AALWPFVRPYRGRV--LAALVALLITAAATLSLPYAVRLMIDHGFSKDSSGLLNRYFAFLLVVALVLALGTAARFYLVTW 84 (576)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555655433222 2333345566677777777666544321100111112223444555555666677788888888
Q ss_pred HHHHHHHHHHHHHHHHHccCCcccccccccccchhHHhcchhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 994 AGYKTATLLFNKMHYCIFRAPMSFFDATPSGRIINRASTDQSAVDLSIPALIGSFAFSIIRVLGVIGVMSLVAWQVFIVF 1073 (1495)
Q Consensus 994 ~~~~~s~~l~~~ll~~ll~ap~~ffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 1073 (1495)
.+.+....++..+++++++.|.++|+....|++++|+++|++.++..+...+..++..++.+++.+++++.++|++.+++
T Consensus 85 ~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 164 (576)
T TIGR02204 85 LGERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLV 164 (576)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888888888899999999999999999988776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcchHHHHhhccHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 000452 1074 IPVIATCIWYQQYYISSARELSRLVGVCKAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGYSRPTFHVAAAMEWL 1153 (1495)
Q Consensus 1074 ip~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl 1153 (1495)
+..+++.+.+..++.+..+...+.....++...+++.|.++|+.+||+|+.|+.+.+++.+..+...+..........|+
T Consensus 165 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (576)
T TIGR02204 165 LLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALL 244 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66555555566666677777777778888899999999999999999999999999999998888777766665555555
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCCCCCc
Q 000452 1154 GFRLDMLSNITFAFSLVF-LISIPKGFIDPAIAGLAVTYGLTLNNLQAMLIWLACQMENKIISVERIFQYTCIPSEPPLE 1232 (1495)
Q Consensus 1154 ~~rl~~l~~~~~~~~~~~-~~~~~~~~~~~~~~gl~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~E~~~~ 1232 (1495)
......+..+..++...+ ......|.++.|.+..+..|...+...+..+...+.++.+...+.+|+.++++.++|.+..
T Consensus 245 ~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~ 324 (576)
T TIGR02204 245 TAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAP 324 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCC
Confidence 554444433222222222 2234578899999999999999999999999999999999999999999999876553211
Q ss_pred cccCCCCCCCCCcceEEEeeeeEEeCCCC-CcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCE
Q 000452 1233 IEESRPNHSWPSHGKIDLRDLQVRYAPHM-PFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGI 1311 (1495)
Q Consensus 1233 ~~~~~~~~~wp~~g~I~f~nv~~~Y~~~~-~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~ 1311 (1495)
. ...+..+|..+.|+|+||+|+|+++. +++|+|+||+|+|||+++|+|+||||||||+++|+|+++|++|+|.+||+
T Consensus 325 ~--~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~ 402 (576)
T TIGR02204 325 A--HPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGV 402 (576)
T ss_pred C--CCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCE
Confidence 1 11112234457899999999997543 57999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCHHHHhcccEEEcccCcCCCCcHHHhcCCC-CCCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHH
Q 000452 1312 DISLIGLHDLRTRLSIIPQDPVMFEGTVRSNVDPL-EEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQR 1390 (1495)
Q Consensus 1312 dI~~i~l~~LR~~isiIpQdp~LF~GTIR~NLdp~-~~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQr 1390 (1495)
|+++++.+++|++++|+||||++|+|||||||.+. ++.+|++++++++++++.+++.++|+|+||+++|+|.+||||||
T Consensus 403 ~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~ 482 (576)
T TIGR02204 403 DLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQR 482 (576)
T ss_pred EHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHH
Confidence 99999999999999999999999999999999864 46789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhccCEEEEEeCcEEEEecChhHHh
Q 000452 1391 QLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLL 1470 (1495)
Q Consensus 1391 Qrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~ivE~gsp~~Ll 1470 (1495)
||++||||++++|+|||||||||++|.+|++.|.+.|++..+++|+|+||||++.+..||+|++|++|+++|.|+|++|+
T Consensus 483 Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~ 562 (576)
T TIGR02204 483 QRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELI 562 (576)
T ss_pred HHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHH
Confidence 99999999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred hcCCChHHHHHHH
Q 000452 1471 ENKSSSFSQLVAE 1483 (1495)
Q Consensus 1471 ~~~~s~f~~lv~~ 1483 (1495)
+ +++.|++|++.
T Consensus 563 ~-~~~~~~~l~~~ 574 (576)
T TIGR02204 563 A-KGGLYARLARL 574 (576)
T ss_pred H-cCChHHHHHhh
Confidence 7 46899998864
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-72 Score=717.92 Aligned_cols=549 Identities=19% Similarity=0.264 Sum_probs=453.9
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHhhcccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 929 VPFILLAQTLFQILQIASNYWIAWATPASKDIKPRVTGSMLLIVFVALAFGSSFCILARSTLLATAGYKTATLLFNKMHY 1008 (1495)
Q Consensus 929 ~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~ 1008 (1495)
+.+++++.++..++.++.++++.+..+... +......++..++++.++..+..+....+......+....+..++++
T Consensus 21 ~~~~~~~~i~~~~~~~~~~~~~~~iid~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 97 (588)
T PRK13657 21 GILLAVANVLLAAATFAEPILFGRIIDAIS---GKGDIFPLLAAWAGFGLFNIIAGVLVARHADRLAHRRRLAVLTEYFE 97 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555567777788888888876654321 11122223334444444444444444444455556666667779999
Q ss_pred HHccCCcccccccccccchhHHhcchhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 1009 CIFRAPMSFFDATPSGRIINRASTDQSAVDLSIPALIGSFAFSIIRVLGVIGVMSLVAWQVFIVFIPVIATCIWYQQYYI 1088 (1495)
Q Consensus 1009 ~ll~ap~~ffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~ip~~~~~~~~~~~y~ 1088 (1495)
++++.|..+|++.+.|++++|+++|++.+...+...+..++..++..++.+++++..+|+++++++.+++++..+..++.
T Consensus 98 ~l~~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~l~~~i~~~~~ 177 (588)
T PRK13657 98 RIIQLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSLVLVVLGIVYTLITTLVM 177 (588)
T ss_pred HHHhCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999888777777777777778888888889999988887777777777788888
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHhhcchHHHHhhccHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 1089 SSARELSRLVGVCKAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGYSRPTFHVAAAMEWLGFRLDMLSNITFAFS 1168 (1495)
Q Consensus 1089 ~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~~~~~~~ 1168 (1495)
+..++..+......+...+++.|+++|+.+||+|+.++.+.+++.+..+...+..........+.....+++..+...++
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (588)
T PRK13657 178 RKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLNRAASTITMLAI 257 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888889999999999999999999999999999999888888777666555544454444444333332222
Q ss_pred HHH-HHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCCCCCccccCCCCCCC-CCcc
Q 000452 1169 LVF-LISIPKGFIDPAIAGLAVTYGLTLNNLQAMLIWLACQMENKIISVERIFQYTCIPSEPPLEIEESRPNHSW-PSHG 1246 (1495)
Q Consensus 1169 ~~~-~~~~~~~~~~~~~~gl~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~w-p~~g 1246 (1495)
.++ ......|.+++|.+..++.+...+...+..+...+..+.....+.+|+.++.+.+++.+.. + ..+ .+ +..+
T Consensus 258 ~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~-~-~~~--~~~~~~~ 333 (588)
T PRK13657 258 LVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDP-P-GAI--DLGRVKG 333 (588)
T ss_pred HHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC-C-CCC--CcCCCCC
Confidence 222 2334578899999988999998898888899998999999999999999998765432211 1 111 11 2346
Q ss_pred eEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccE
Q 000452 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLS 1326 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~is 1326 (1495)
.|+++||+|+|+++ +++|+|+||+|+|||++||||+||||||||+++|+|+++|++|+|.+||.|+++++.+++|++|+
T Consensus 334 ~I~~~~vsf~y~~~-~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 412 (588)
T PRK13657 334 AVEFDDVSFSYDNS-RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIA 412 (588)
T ss_pred eEEEEEEEEEeCCC-CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheE
Confidence 89999999999744 56999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcccCcCCCCcHHHhcCCC-CCCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCe
Q 000452 1327 IIPQDPVMFEGTVRSNVDPL-EEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKI 1405 (1495)
Q Consensus 1327 iIpQdp~LF~GTIR~NLdp~-~~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALLr~~~I 1405 (1495)
|+||||.+|+||||+||... ++.+|++++++++++++++++.++|+|+||.++|+|.+||||||||+|||||++++|+|
T Consensus 413 ~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~i 492 (588)
T PRK13657 413 VVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPI 492 (588)
T ss_pred EEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999865 46899999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhccCEEEEEeCcEEEEecChhHHhhcCCChHHHHHHHHh
Q 000452 1406 LMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSFSQLVAEYT 1485 (1495)
Q Consensus 1406 LiLDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~ivE~gsp~~Ll~~~~s~f~~lv~~~~ 1485 (1495)
||||||||+||++|++.|.+.|++..+++|+|+||||++++..||+|++|++|+++|.|+|++|+++ ++.|++|+++..
T Consensus 493 liLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~~~-~~~y~~l~~~~~ 571 (588)
T PRK13657 493 LILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVAR-GGRFAALLRAQG 571 (588)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHHHC-CChHHHHHHHhh
Confidence 9999999999999999999999998889999999999999999999999999999999999999975 689999998664
Q ss_pred h
Q 000452 1486 Q 1486 (1495)
Q Consensus 1486 ~ 1486 (1495)
.
T Consensus 572 ~ 572 (588)
T PRK13657 572 M 572 (588)
T ss_pred c
Confidence 3
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-75 Score=658.74 Aligned_cols=535 Identities=20% Similarity=0.329 Sum_probs=426.1
Q ss_pred HHHHHhhHHHHHhhcccCCCCCCCcchhHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 000452 940 QILQIASNYWIAWATPASKDIKPRVTGSMLLIVFVALAF------GSSFCILARSTLLATAGYKTATLLFNKMHYCIFRA 1013 (1495)
Q Consensus 940 ~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~y~~l~~------~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~ll~a 1013 (1495)
.+....-+...+|..+... .|..........|+.+.+ ++.++.-+|+++......-+.+.+-.++++|+...
T Consensus 228 rli~~~~pi~~k~iv~~lt--ap~~~~~~~~~~~v~L~flqg~gtgsG~~~nlRtfLWi~VqQyttR~ie~~lfrHlh~L 305 (790)
T KOG0056|consen 228 RLINVSLPILSKWIVDELT--APDTFQYSLVFLYVFLKFLQGGGTGSGFLNNLRTFLWIPVQQYTTREIETELFRHLHNL 305 (790)
T ss_pred HHHhhhhHHhHHHHHHhhc--CcchhhHHHHHHHHHHHHHhcCCccccchhhhheeEEEEhhHhHHHHHHHHHHHHHHhh
Confidence 3444444555554443211 222223333444554443 34567777888887888888999999999999999
Q ss_pred CcccccccccccchhHHhcchhHHHhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH----HHHHH
Q 000452 1014 PMSFFDATPSGRIINRASTDQSAVDLSIPALIGSFAFSIIRVLGVIGVMS-LVAWQVFIVFIPVIATCIWY----QQYYI 1088 (1495)
Q Consensus 1014 p~~ffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~v~ip~~~~~~~~----~~~y~ 1088 (1495)
.++|.-...+|+++.-+.+-.+.+. .+...+.+..-.++.+...++..+ ..+||+.+++..++.+|... ..+-.
T Consensus 306 SlrwHL~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~vYF~~~Fn~wFgLIVfl~m~lY~~~Ti~iTeWRT 384 (790)
T KOG0056|consen 306 SLRWHLNRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAMVYFFIKFNIWFGLIVFLMMLLYCYVTIKITEWRT 384 (790)
T ss_pred ceeeeecccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhhhhhhhhHhHHHHHHHHHHHHHHhheeeeeehhhH
Confidence 9999999999998888877776665 444433344444444443333332 35677777666666555432 33333
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHhhcchHHHHhhccHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 1089 SSARELSRLVGVCKAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGYSRPTFHVAAAMEWLGFRLDMLSNITFAFS 1168 (1495)
Q Consensus 1089 ~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~~~~~~~ 1168 (1495)
+..|.+...+.+++ +.-.+++-...|+|-|++|+...+++.+.++.+++..+........+...-+.+..+.....
T Consensus 385 k~rR~Mn~~~nesr----Ar~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~Ii~lgll~g 460 (790)
T KOG0056|consen 385 KARRKMNNSWNESR----ARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNGIIGLGLLAG 460 (790)
T ss_pred HHHHHhhhhhhhhh----hhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhh
Confidence 33344433333333 44568889999999999999999999999999999888776666555554444433322222
Q ss_pred HH-HHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCCCCCccccCCCCCCCCCcce
Q 000452 1169 LV-FLISIPKGFIDPAIAGLAVTYGLTLNNLQAMLIWLACQMENKIISVERIFQYTCIPSEPPLEIEESRPNHSWPSHGK 1247 (1495)
Q Consensus 1169 ~~-~~~~~~~~~~~~~~~gl~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~ 1247 (1495)
.+ ....+..+..+.|-.-+..+|.+++.++++|+-..+-.++++.+-.||+.+.++.++|-. +....++---.+|.
T Consensus 461 sll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVv---d~P~a~pl~~~~G~ 537 (790)
T KOG0056|consen 461 SLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVV---DLPGAPPLKVTQGK 537 (790)
T ss_pred hheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhh---cCCCCCCccccCCe
Confidence 22 222233567788888899999999999999999999999999999999999987555432 21112222235799
Q ss_pred EEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccEE
Q 000452 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSI 1327 (1495)
Q Consensus 1248 I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~isi 1327 (1495)
|+|+||+|.|+|+.| ||+||||+++||+.||+|||||+||||++++|||+++.++|+|.|||+||+++..+.||+.||+
T Consensus 538 i~fsnvtF~Y~p~k~-vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGV 616 (790)
T KOG0056|consen 538 IEFSNVTFAYDPGKP-VLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGV 616 (790)
T ss_pred EEEEEeEEecCCCCc-eeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCc
Confidence 999999999999865 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcccCcCCCCcHHHhcCCCC-CCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCeE
Q 000452 1328 IPQDPVMFEGTVRSNVDPLE-EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKIL 1406 (1495)
Q Consensus 1328 IpQdp~LF~GTIR~NLdp~~-~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALLr~~~IL 1406 (1495)
||||.+||+.||-+||.... .++|||+.+|.+.++++|.|...|+|++|.|||+|-.||||||||+++||++||+|.|+
T Consensus 617 VPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iI 696 (790)
T KOG0056|consen 617 VPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSII 696 (790)
T ss_pred ccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEE
Confidence 99999999999999998654 79999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhccCEEEEEeCcEEEEecChhHHhhcCCChHHHHHHHHh
Q 000452 1407 MLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSFSQLVAEYT 1485 (1495)
Q Consensus 1407 iLDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~ivE~gsp~~Ll~~~~s~f~~lv~~~~ 1485 (1495)
+||||||+||..||+.||.++.+..+++|.|+||||++||.++|.|+|+++|+|+|.|+|+||+++++|.|++|++...
T Consensus 697 lLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~rdgG~Ya~MWq~qq 775 (790)
T KOG0056|consen 697 LLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKRDGGAYADMWQAQQ 775 (790)
T ss_pred EEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhccCCcHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998999999996443
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-72 Score=656.44 Aligned_cols=495 Identities=20% Similarity=0.286 Sum_probs=424.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccccccccccchhHHhcchhHHHhhhHHHHHHHHHHHHHHHHHHH
Q 000452 981 SFCILARSTLLATAGYKTATLLFNKMHYCIFRAPMSFFDATPSGRIINRASTDQSAVDLSIPALIGSFAFSIIRVLGVIG 1060 (1495)
Q Consensus 981 ~~~~~~~~~~~~~~~~~~s~~l~~~ll~~ll~ap~~ffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~~~~~~ 1060 (1495)
.+..++-.+......++.-.+++.++++++...+..-...-..|+++||+..|++.+|..+-..+...+..+....+..+
T Consensus 72 t~~RY~ERlvsH~AtfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i 151 (573)
T COG4987 72 TAARYVERLVSHDATFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTI 151 (573)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHH
Confidence 33333434444566778888999999999999888888999999999999999999999999999999998888888888
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcchHHHHhhccHHHHHHHHHHHHHHh
Q 000452 1061 VMSLVAWQVFIVFI-PVIATCIWYQQYYISSARELSRLVGVCKAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGY 1139 (1495)
Q Consensus 1061 ~~~~~~~~~~~v~i-p~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~ 1139 (1495)
.+++.+|++++.+. .++++.+.+.-.+.+..|...+--...++.+.++|.|.+.|....+.||.+++|.+.+....+..
T Consensus 152 ~L~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~ 231 (573)
T COG4987 152 GLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASW 231 (573)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHH
Confidence 88888988876544 34444555666677777888787888899999999999999999999999999999999999999
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHH
Q 000452 1140 SRPTFHVAAAMEWLGFRLDMLSNITFAFS-LVFLISIPKGFIDPAIAGLAVTYGLTLNNLQAMLI-WLACQMENKIISVE 1217 (1495)
Q Consensus 1140 ~~~~~~~~~~~~wl~~rl~~l~~~~~~~~-~~~~~~~~~~~~~~~~~gl~l~~~~~l~~~~~~~~-~~~~~le~~~~sve 1217 (1495)
.+..........|-.+.+.++..+.++.. ++.......|..+...+.+++.-.+.....+..+. ..+.++....-|.+
T Consensus 232 ~~~q~k~~~~~~~~~a~~~l~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~ 311 (573)
T COG4987 232 LKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASAR 311 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHH
Confidence 99999999999999999999888776633 33333345555553333333333233333333333 56678888899999
Q ss_pred HHHHHhcCCCCCCCccccCCCCCCCCCcc-eEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHh
Q 000452 1218 RIFQYTCIPSEPPLEIEESRPNHSWPSHG-KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLF 1296 (1495)
Q Consensus 1218 Ri~~~~~~~~E~~~~~~~~~~~~~wp~~g-~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~ 1296 (1495)
|+.+..+.++|..... +.-|..+ .++++||+|+|+.+.++||+|+||++++||||||+||||||||||+++|.
T Consensus 312 Rl~~i~~q~~e~~~~~------~~~~~~~~~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~ 385 (573)
T COG4987 312 RLNDILDQKPEVTFPD------EQTATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLA 385 (573)
T ss_pred HHhhhccCCcccCCCc------cccCCccceeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHH
Confidence 9999887766654321 1112222 79999999999998889999999999999999999999999999999999
Q ss_pred ccccCCccEEEEcCEeCCCCCHHHHhcccEEEcccCcCCCCcHHHhcCCC-CCCCHHHHHHHHHHcCCcHHHHhccCCcc
Q 000452 1297 RIVEPAAGQILIDGIDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNVDPL-EEYTDEQIWEALDKCQLGDEVRKKEGKLD 1375 (1495)
Q Consensus 1297 rl~ep~~G~I~IDG~dI~~i~l~~LR~~isiIpQdp~LF~GTIR~NLdp~-~~~sd~ei~~aL~~~~L~~~v~~lp~gLd 1375 (1495)
|.++|++|+|..+|.+++.++.+++|+.|++++|.+++|+||+|+||... .+.||||+|+||++++|.+.+++.|+||+
T Consensus 386 ~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~ 465 (573)
T COG4987 386 GAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLN 465 (573)
T ss_pred hccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhh
Confidence 99999999999999999999999999999999999999999999999743 47999999999999999999999999999
Q ss_pred cccccCCCCCCchHHHHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhccCEEEEE
Q 000452 1376 SKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLL 1455 (1495)
Q Consensus 1376 t~v~e~G~nLS~GQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~~~DrIlVL 1455 (1495)
|.+||+|.+||||||||++|||+||++.++++|||||.+||++||+.|.+.|.+..+|+|+|+||||+.-+..||||+||
T Consensus 466 t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~drIivl 545 (573)
T COG4987 466 TWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVL 545 (573)
T ss_pred chhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhcCEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCcEEEEecChhHHhhcCCChHHHHHH
Q 000452 1456 SHGLIEEYDSPRKLLENKSSSFSQLVA 1482 (1495)
Q Consensus 1456 ~~G~ivE~gsp~~Ll~~~~s~f~~lv~ 1482 (1495)
|+|+++|+|+|++|+++ +|.|++|.+
T Consensus 546 ~~Gkiie~G~~~~Ll~~-~g~~~~l~q 571 (573)
T COG4987 546 DNGKIIEEGTHAELLAN-NGRYKRLYQ 571 (573)
T ss_pred ECCeeeecCCHHhhhcc-ccHHHHHhc
Confidence 99999999999999984 799999865
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-71 Score=701.96 Aligned_cols=561 Identities=20% Similarity=0.270 Sum_probs=453.2
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhcccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 916 YWKYITAAYGGVLVPFILLAQTLFQILQIASNYWIAWATPASKDIKPRVTGSMLLIVFVALAFGSSFCILARSTLLATAG 995 (1495)
Q Consensus 916 y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~ 995 (1495)
+++|++...+ .+.+.+++.++..++.++.++.+++..+.... ......++..++++.++..+..+.+..+....+
T Consensus 10 l~~~l~~~k~--~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (585)
T TIGR01192 10 ALSYLNVHKN--RVLLIVIANITLAAITIAEPILFGRIIDAISS---KSDVLPTLALWAGFGVFNTIAYVLVAREADRLA 84 (585)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455554322 22334444566677777788877765542211 111112222223333333444444444455556
Q ss_pred HHHHHHHHHHHHHHHccCCcccccccccccchhHHhcchhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 996 YKTATLLFNKMHYCIFRAPMSFFDATPSGRIINRASTDQSAVDLSIPALIGSFAFSIIRVLGVIGVMSLVAWQVFIVFIP 1075 (1495)
Q Consensus 996 ~~~s~~l~~~ll~~ll~ap~~ffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~ip 1075 (1495)
.+....++.++++++++.|++||+++++|++++|+++|++.+...+...+..++..++.+++.+++++.++|.++++++.
T Consensus 85 ~~~~~~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~ 164 (585)
T TIGR01192 85 HGRRATLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIVLMV 164 (585)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666777799999999999999999999999999999999998888888888888888888888899999999988887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcchHHHHhhccHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 000452 1076 VIATCIWYQQYYISSARELSRLVGVCKAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGYSRPTFHVAAAMEWLGF 1155 (1495)
Q Consensus 1076 ~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~ 1155 (1495)
+++++.++..++.+..++..+......+...+++.|+++|+.+||+|+.|+.+.+++.+..+...+..+.......+...
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (585)
T TIGR01192 165 LGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASG 244 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777778888888888888888888899999999999999999999999999999888887766665544333333322
Q ss_pred HHHHHHHHHHHHHHHH-HHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCCCCCccc
Q 000452 1156 RLDMLSNITFAFSLVF-LISIPKGFIDPAIAGLAVTYGLTLNNLQAMLIWLACQMENKIISVERIFQYTCIPSEPPLEIE 1234 (1495)
Q Consensus 1156 rl~~l~~~~~~~~~~~-~~~~~~~~~~~~~~gl~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~E~~~~~~ 1234 (1495)
...++..+...++.++ ......|.++.|.+..++.|...+...+..+...+.++.....+.+|+.+..+.+++.+..
T Consensus 245 ~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~-- 322 (585)
T TIGR01192 245 LNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEP-- 322 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCC--
Confidence 2233332222222222 2234578899999888888988888888888889999999999999999998765442211
Q ss_pred cCCCCCCCC-CcceEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeC
Q 000452 1235 ESRPNHSWP-SHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDI 1313 (1495)
Q Consensus 1235 ~~~~~~~wp-~~g~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI 1313 (1495)
..+ ..++ ..+.|+++||+|+|+++ .++|+|+||+|++||++||||+||||||||+++|+|+++|++|+|.+||+|+
T Consensus 323 -~~~-~~~~~~~~~i~~~~v~~~y~~~-~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~ 399 (585)
T TIGR01192 323 -ADA-PELPNVKGAVEFRHITFEFANS-SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDI 399 (585)
T ss_pred -ccC-CCCCCCCCeEEEEEEEEECCCC-CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEh
Confidence 111 1122 35689999999999754 3589999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHhcccEEEcccCcCCCCcHHHhcCCC-CCCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHH
Q 000452 1314 SLIGLHDLRTRLSIIPQDPVMFEGTVRSNVDPL-EEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQL 1392 (1495)
Q Consensus 1314 ~~i~l~~LR~~isiIpQdp~LF~GTIR~NLdp~-~~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQr 1392 (1495)
.+++.+++|++++++||||.+|+||||+||... .+.+|+|++++++.+++++++.++|+|+||.++|+|.+||||||||
T Consensus 400 ~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qr 479 (585)
T TIGR01192 400 NTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQR 479 (585)
T ss_pred hhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHH
Confidence 999999999999999999999999999999865 4689999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhccCEEEEEeCcEEEEecChhHHhhc
Q 000452 1393 VCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLEN 1472 (1495)
Q Consensus 1393 l~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~ivE~gsp~~Ll~~ 1472 (1495)
++|||||+++|+|||||||||+||.+|++.|++.|++..+++|+|+||||++++..||+|++|++|+++|.|+|++++++
T Consensus 480 l~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 559 (585)
T TIGR01192 480 LAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQK 559 (585)
T ss_pred HHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHHC
Confidence 99999999999999999999999999999999999998889999999999999999999999999999999999999975
Q ss_pred CCChHHHHHHHHhhc
Q 000452 1473 KSSSFSQLVAEYTQR 1487 (1495)
Q Consensus 1473 ~~s~f~~lv~~~~~~ 1487 (1495)
++.|+++++.....
T Consensus 560 -~~~y~~l~~~~~~~ 573 (585)
T TIGR01192 560 -DGRFYKLLRRSGLL 573 (585)
T ss_pred -CChHHHHHHhCccc
Confidence 68999999877654
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-71 Score=704.94 Aligned_cols=511 Identities=21% Similarity=0.255 Sum_probs=430.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccccccccccchhHHhcchhHHHhhhHHHHHHH
Q 000452 969 LLIVFVALAFGSSFCILARSTLLATAGYKTATLLFNKMHYCIFRAPMSFFDATPSGRIINRASTDQSAVDLSIPALIGSF 1048 (1495)
Q Consensus 969 ~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~ll~ap~~ffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~ 1048 (1495)
++.+++++.++..++.+++.++....+.+...+++.++++++++.|+++|++.++|++++|+++|++.+...+...+..+
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~ 117 (569)
T PRK10789 38 WIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTL 117 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34445555556666677777777788899999999999999999999999999999999999999999987777777777
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcchHHHHhhccHHH
Q 000452 1049 AFSIIRVLGVIGVM-SLVAWQVFIVFIPVIATCIWYQQYYISSARELSRLVGVCKAPLIQHFAETVSGSTTIRSFDQESR 1127 (1495)
Q Consensus 1049 ~~~~~~~~~~~~~~-~~~~~~~~~v~ip~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~ 1127 (1495)
+..++..++.++++ ++++|+++++++..+++..++...+.+..++..+......+.+.+++.|+++|+.+||+|+.|++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~ 197 (569)
T PRK10789 118 VDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDR 197 (569)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHH
Confidence 77766655555555 47889887776666666666666666666666666777788999999999999999999999999
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 1128 FIDTNMELMDGYSRPTFHVAAAMEWLGFRLDMLSNITFAFSLVF-LISIPKGFIDPAIAGLAVTYGLTLNNLQAMLIWLA 1206 (1495)
Q Consensus 1128 f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~~~~~~~~~~-~~~~~~~~~~~~~~gl~l~~~~~l~~~~~~~~~~~ 1206 (1495)
+.+++.+..+...+..+.......+..........+...+...+ ......|.++.|.+..++.|...+..++..+...+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~ 277 (569)
T PRK10789 198 QSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMF 277 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988887776666554444443333333222222221111 22344788899998888888888888888889999
Q ss_pred HHHHHHhhHHHHHHHHhcCCCCCCCccccCCCCCCCCCcceEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCC
Q 000452 1207 CQMENKIISVERIFQYTCIPSEPPLEIEESRPNHSWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGS 1286 (1495)
Q Consensus 1207 ~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGS 1286 (1495)
.++.....+.+|+.++.+.++|.+.. ....+ +..|.|+++||+|+|+.+.+++|+|+||+|+|||++||||+|||
T Consensus 278 ~~~~~~~~a~~ri~~ll~~~~~~~~~--~~~~~---~~~~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGs 352 (569)
T PRK10789 278 NIVERGSAAYSRIRAMLAEAPVVKDG--SEPVP---EGRGELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGS 352 (569)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccCC--CCCCC---CCCCcEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCC
Confidence 99999999999999999876543211 11111 23568999999999986556799999999999999999999999
Q ss_pred CHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccEEEcccCcCCCCcHHHhcCCC-CCCCHHHHHHHHHHcCCcH
Q 000452 1287 GKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNVDPL-EEYTDEQIWEALDKCQLGD 1365 (1495)
Q Consensus 1287 GKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~isiIpQdp~LF~GTIR~NLdp~-~~~sd~ei~~aL~~~~L~~ 1365 (1495)
|||||+++|+|+++|++|+|.+||+|+++++.+++|++++++||+|++|+||||+||... .+++|++++++++.+++++
T Consensus 353 GKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~ 432 (569)
T PRK10789 353 GKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHD 432 (569)
T ss_pred CHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHH
Confidence 999999999999999999999999999999999999999999999999999999999865 4689999999999999999
Q ss_pred HHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchh
Q 000452 1366 EVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITS 1445 (1495)
Q Consensus 1366 ~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~t 1445 (1495)
++.++|+|+||.++|+|.+||||||||++||||++++|+|||||||||+||+++++.|.+.|++..+++|+|+||||+++
T Consensus 433 ~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~ 512 (569)
T PRK10789 433 DILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSA 512 (569)
T ss_pred HHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999998889999999999999
Q ss_pred hhccCEEEEEeCcEEEEecChhHHhhcCCChHHHHHHHHh
Q 000452 1446 VIDSDMVLLLSHGLIEEYDSPRKLLENKSSSFSQLVAEYT 1485 (1495)
Q Consensus 1446 i~~~DrIlVL~~G~ivE~gsp~~Ll~~~~s~f~~lv~~~~ 1485 (1495)
+..||+|++|++|+++|.|+|++|+++ ++.|++|++...
T Consensus 513 ~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~y~~l~~~~~ 551 (569)
T PRK10789 513 LTEASEILVMQHGHIAQRGNHDQLAQQ-SGWYRDMYRYQQ 551 (569)
T ss_pred HHcCCEEEEEeCCEEEEecCHHHHHHc-CChHHHHHHHhh
Confidence 999999999999999999999999975 589999987543
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-71 Score=696.62 Aligned_cols=518 Identities=20% Similarity=0.261 Sum_probs=430.4
Q ss_pred HHHHHHHHHHHHhhHHHHHhhcccCCCCCCCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 000452 933 LLAQTLFQILQIASNYWIAWATPASKDIKPRV-TGSMLLIVFVALAFGSSFCILARSTLLATAGYKTATLLFNKMHYCIF 1011 (1495)
Q Consensus 933 ~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~-~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~ll 1011 (1495)
+++.++..++.++.++.+++..+......... ....++..++++.++..++.+++.++....+.+...+++.+++++++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~ 88 (529)
T TIGR02857 9 GLLGALGALLIIAQAWLLARVIDGLISAGEPLAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLRERLLAAVA 88 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566666777777766654321011111 12234455666667777888888999999999999999999999999
Q ss_pred cCCcccccccccccchhHHhcchhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 1012 RAPMSFFDATPSGRIINRASTDQSAVDLSIPALIGSFAFSIIRVLGVIGVMSLVAWQVFIVFIPVIATCIWYQQYYISSA 1091 (1495)
Q Consensus 1012 ~ap~~ffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~ip~~~~~~~~~~~y~~~~ 1091 (1495)
+.|..+|++.++|++++|+++|++.++..+...+..++..++.+++.+++++..+|+++++++..+++..++...+.+..
T Consensus 89 ~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~~~~~~~~~~ 168 (529)
T TIGR02857 89 ALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPIFMILIGWAA 168 (529)
T ss_pred hCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999888888888888888888888999999877766555544444444455555
Q ss_pred HHHHHHHHHhhhhHHHHHHHhhcchHHHHhhccHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q 000452 1092 RELSRLVGVCKAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGYSRPTFHVAAAMEWLGFRLDMLSNITFAFSL-V 1170 (1495)
Q Consensus 1092 r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~~~~~~~~-~ 1170 (1495)
+...+......+...+++.|+++|+.+||+|+.|+++.+++.+..+...+..........+......++..+...++. +
T Consensus 169 ~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (529)
T TIGR02857 169 QAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFATLSVALVAVY 248 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566666777889999999999999999999999999999888887777666666566665555555544333221 2
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCCCCCccccCCCCCCCCCcceEEE
Q 000452 1171 FLISIPKGFIDPAIAGLAVTYGLTLNNLQAMLIWLACQMENKIISVERIFQYTCIPSEPPLEIEESRPNHSWPSHGKIDL 1250 (1495)
Q Consensus 1171 ~~~~~~~~~~~~~~~gl~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~f 1250 (1495)
.......|.++.|....++.|+..+...+..+...+..+.....+.+|+.++++.+++... . .+...+..+.|+|
T Consensus 249 ~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~----~-~~~~~~~~~~i~~ 323 (529)
T TIGR02857 249 IGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAG----K-APVTAAPAPSLEF 323 (529)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC----C-cCCCCCCCCeEEE
Confidence 2222336788998888888888888888888889999999999999999999975533221 1 1111233468999
Q ss_pred eeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccEEEcc
Q 000452 1251 RDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSIIPQ 1330 (1495)
Q Consensus 1251 ~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~isiIpQ 1330 (1495)
+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|+|+++|++|+|.+||+|+++++.+++|++++||||
T Consensus 324 ~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q 403 (529)
T TIGR02857 324 SGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQ 403 (529)
T ss_pred EEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcC
Confidence 99999998665579999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcCCCCcHHHhcCCC-CCCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCeEEEE
Q 000452 1331 DPVMFEGTVRSNVDPL-EEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLD 1409 (1495)
Q Consensus 1331 dp~LF~GTIR~NLdp~-~~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALLr~~~ILiLD 1409 (1495)
||.+|+|||||||... ++++|+++++|+++++++++++++|+||||.++|+|.+||||||||++||||++++|+|+|||
T Consensus 404 ~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililD 483 (529)
T TIGR02857 404 HPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLD 483 (529)
T ss_pred CCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9999999999999865 468999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhccCEEEEE
Q 000452 1410 EATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLL 1455 (1495)
Q Consensus 1410 EaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~~~DrIlVL 1455 (1495)
||||+||++|++.|++.|++..+++|+|+||||++++..||+|+||
T Consensus 484 E~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 484 EPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred CcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 9999999999999999999988899999999999999999999986
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-70 Score=696.89 Aligned_cols=546 Identities=21% Similarity=0.246 Sum_probs=433.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 290 KLIKAMFRSVWKDVLLTALVAIVCTLATYVGPYLIDTLVQYLSGKRDFENEGYALVSAFCVAKLVECLCQRFFVFRLEQL 369 (1495)
Q Consensus 290 ~l~~al~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 369 (1495)
+.++.+.+.+++.+++..++.++..++..+.|++++.+++.+..++......+.+++++++..++..++.....+...+.
T Consensus 11 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (588)
T PRK11174 11 RWLKQQSKPAKRWLNLSILLGFLSGLLLIAQAWLLATILQALIIENIPREALLPPFILLILLFVLRALLAWLRERVGFKA 90 (588)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556678888889999999999999999999999999997642211112223344455556666777777777788889
Q ss_pred HHHHHHHHHHHHHHHHhcCCcchhcCCCHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 370 GIRLRAALIAMIYNKGLKLSSQAKQGNTSGEIINFMTVDAERVAELSW-YIHDPWLFLFEVALSFLILYKSLGIASVAAF 448 (1495)
Q Consensus 370 g~rir~~L~~~iy~K~L~ls~~~~~~~~~G~i~nl~s~D~~~i~~~~~-~~~~~w~~pl~i~~~~~lL~~~lG~~~l~gl 448 (1495)
+.++...+...+|+|.++++....+++++|+++|++++|++++.+++. .+..++...+..++++++++..-...+++.+
T Consensus 91 ~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l 170 (588)
T PRK11174 91 GQHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAAGLILL 170 (588)
T ss_pred HHHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998764 5566666666666555555433333334444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q 000452 449 FGTVIFMLVNVPLSTVQEKFQNELMKSKDERMKATSEILRNMRILKLQGWELKFLSKT----IDLRKSESGWLKRCLYTS 524 (1495)
Q Consensus 449 ~~~i~~~~~~~~~~~~~~~~~~~~m~~~D~R~~~~~E~L~~ir~IK~~~wE~~f~~~i----~~~R~~E~~~l~~~~~~~ 524 (1495)
+++.+...+...+.+..++.+++.++..++..+.+.|.++|+++||.|+||+.+.+++ ++.|+.+.+..+......
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (588)
T PRK11174 171 GTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAFLSS 250 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455667788888889999999999999999999999999999999887776 444555554444333332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcCH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 525 SITSFVFWCAPTFVSVITFGTCILLKVPLES---------GKVLSAIATFRLLQILIYKLPAIISMTIQTKVSLQRIASF 595 (1495)
Q Consensus 525 ~~~~~~~~~~p~~v~~~~f~~~~~~~~~L~~---------~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vs~~RI~~f 595 (1495)
....++.. .+.+ .++.++.+.+.| .++. ..++.++.+...+..|+..++..+..+.+++++.+||.++
T Consensus 251 ~~~~~~~~-~~~~-~~~~~~~~~~~g-~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~ 327 (588)
T PRK11174 251 AVLEFFAS-ISIA-LVAVYFGFSYLG-ELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVTF 327 (588)
T ss_pred HHHHHHHH-HHHH-HHHHHHHHHHhc-ccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222221 1211 122233333333 3443 3455556677788899999999999999999999999999
Q ss_pred hcCCCCCcccccCCCCCCCcccEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCc
Q 000452 596 FCLDELQPDLVEKQPRGSSETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISG 675 (1495)
Q Consensus 596 L~~~e~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G 675 (1495)
++.++.++..............|+++|++|.|.. ++++|+|+||++++|+++||+||||||||||+++|+|++ |++|
T Consensus 328 l~~~~~~~~~~~~~~~~~~~~~i~~~~vsf~~~~--~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G 404 (588)
T PRK11174 328 LETPLAHPQQGEKELASNDPVTIEAEDLEILSPD--GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQG 404 (588)
T ss_pred HcCCCcccCCCccccCCCCCceEEEEeeEEeccC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCc
Confidence 9876533211110001112235999999987752 367999999999999999999999999999999999999 8999
Q ss_pred EEEEcC-------------eEEEEccCCcccCccHHHHHhcCCC-CCHHHHHHHHHHhCcHHHHhhcCCCCcccccCCCC
Q 000452 676 TLKLCG-------------TKAYVAQSPWIQSGKIEDNILFGKE-MDRERYNAVLDACSLEKDLEILSFGDQTVVGERGI 741 (1495)
Q Consensus 676 ~v~~~g-------------~~ayv~Q~~~l~~~ti~enI~fg~~-~~~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~ 741 (1495)
+|.++| .++||||+|++|++||+|||.+|++ .++++++++++.|+++++++.+|+|++|.+||+|.
T Consensus 405 ~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~ 484 (588)
T PRK11174 405 SLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAA 484 (588)
T ss_pred EEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCC
Confidence 999998 4799999999999999999999965 89999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEecCCCccccCCEEEEEeCCEEEE
Q 000452 742 NLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQ 821 (1495)
Q Consensus 742 ~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~~~d~i~~l~~G~i~~ 821 (1495)
+|||||||||+||||+++||+|+||||||||||+++++++.+ .+....+++|+|+|||+++.+..||+|++|++|++++
T Consensus 485 ~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~-~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e 563 (588)
T PRK11174 485 GLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQ-ALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQ 563 (588)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHH-HHHHHhCCCEEEEEecChHHHHhCCEEEEEeCCeEee
Confidence 999999999999999999999999999999999999999975 5666678999999999999999999999999999999
Q ss_pred ecChHHHHhcCCchhHHHHHH
Q 000452 822 AGKYTDVINSGTDFMELVDAH 842 (1495)
Q Consensus 822 ~g~~~~l~~~~~~~~~l~~~~ 842 (1495)
.|+++|++++++.|.+++..+
T Consensus 564 ~G~~~eL~~~~~~y~~l~~~q 584 (588)
T PRK11174 564 QGDYAELSQAGGLFATLLAHR 584 (588)
T ss_pred cCCHHHHHhcchHHHHHHHHh
Confidence 999999999888888877554
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-71 Score=643.28 Aligned_cols=506 Identities=23% Similarity=0.349 Sum_probs=398.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccccccccccchhHHhcchhHHHhhhHHHHH
Q 000452 967 SMLLIVFVALAFGSSFCILARSTLLATAGYKTATLLFNKMHYCIFRAPMSFFDATPSGRIINRASTDQSAVDLSIPALIG 1046 (1495)
Q Consensus 967 ~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~ll~ap~~ffd~tp~G~ilnR~s~D~~~vd~~l~~~l~ 1046 (1495)
...+..|.+..+++.+|..++.+.++....++-+....+.+++.++..+++|.+..+|.+-+++..-...+...+...+.
T Consensus 74 ~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~ 153 (591)
T KOG0057|consen 74 TALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDLSFFLSRGTGALNRIIDRGSRAISFVLSAMVF 153 (591)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCcchHHHHHHhhhhHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999998877777766666665555555
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcchHHHHh
Q 000452 1047 SFAFSIIRVLGVIGVMSL-VAWQVFIVFIPVIATCIW----YQQYYISSARELSRLVGVCKAPLIQHFAETVSGSTTIRS 1121 (1495)
Q Consensus 1047 ~~~~~~~~~~~~~~~~~~-~~~~~~~v~ip~~~~~~~----~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRa 1121 (1495)
.++..++.+......+.+ ..+.+.++++..+..|.. +.++=-+ .++....+........-|++..-.+||+
T Consensus 154 ~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~----fR~~~N~Adn~as~~~~dsL~Nye~VKs 229 (591)
T KOG0057|consen 154 NIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWRNR----FRKAMNNADNSASRRAYDSLINYEIVKS 229 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhHHHH----HHHHHHhhhhHHHHHHHHHHhhHHHHHH
Confidence 544444443333322222 223333333333333321 1222111 2222233344455566789999999999
Q ss_pred hccHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCCHHHHHHHHHHHHHHHHHHH
Q 000452 1122 FDQESRFIDTNMELMDGYSRPTFHVAAAMEWLGFRLDMLSNITFAFSLVFLI-SIPKGFIDPAIAGLAVTYGLTLNNLQA 1200 (1495)
Q Consensus 1122 f~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~~~~~~~~~~~~-~~~~~~~~~~~~gl~l~~~~~l~~~~~ 1200 (1495)
|+.|++..+++...+.++.+...........+.+--..+.+....+...+.. ....+.++.+-.-+..+...++...+.
T Consensus 230 fNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~ 309 (591)
T KOG0057|consen 230 FNNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLN 309 (591)
T ss_pred cccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhhHHHHHHHHHhHHH
Confidence 9999999999999998888877766665555554444443332222222211 123445666666677777778888888
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHhcCCCCCCCccccCCCCCCCCCcceEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEE
Q 000452 1201 MLIWLACQMENKIISVERIFQYTCIPSEPPLEIEESRPNHSWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGI 1280 (1495)
Q Consensus 1201 ~~~~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgI 1280 (1495)
.+-..++++-..+.-.+-+....+.... +.+. +++.-+..|.|+|+||+|.|.|+ ++||+|+||+|++||||||
T Consensus 310 ~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~----i~~~-~~~i~~~~~~I~F~dV~f~y~~k-~~iL~gvsf~I~kGekVaI 383 (591)
T KOG0057|consen 310 FLGSVYRELRQALTDMRTLFILLEVDED----IQEA-ALPIELFGGSIEFDDVHFSYGPK-RKVLKGVSFTIPKGEKVAI 383 (591)
T ss_pred HHHHHHHHHHHHHHhHHHHHhhhhhhhh----hhhc-cCCcccCCCcEEEEeeEEEeCCC-CceecceeEEecCCCEEEE
Confidence 8888888777776666555443221110 1111 11222345789999999999876 4599999999999999999
Q ss_pred EcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccEEEcccCcCCCCcHHHhcCCCC-CCCHHHHHHHHH
Q 000452 1281 VGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNVDPLE-EYTDEQIWEALD 1359 (1495)
Q Consensus 1281 VGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~isiIpQdp~LF~GTIR~NLdp~~-~~sd~ei~~aL~ 1359 (1495)
||++||||||++++|+|+++ .+|+|+|||+||+++.++.+|+.||+||||..||++||-+||...+ ..+|||+.++++
T Consensus 384 vG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k 462 (591)
T KOG0057|consen 384 VGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACK 462 (591)
T ss_pred ECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHH
Confidence 99999999999999999999 9999999999999999999999999999999999999999997654 799999999999
Q ss_pred HcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Q 000452 1360 KCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITI 1439 (1495)
Q Consensus 1360 ~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~I 1439 (1495)
+++++|.+.++|+|++|.|||+|..||||||||++||||+||+|+|+++|||||+||.+||+.|.+.|+...+++|+|+|
T Consensus 463 ~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~I 542 (591)
T KOG0057|consen 463 RAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMI 542 (591)
T ss_pred HcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998999999999
Q ss_pred ecCchhhhccCEEEEEeCcEEEEecChhHHhhcCCChHHHHHHHH
Q 000452 1440 AHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSFSQLVAEY 1484 (1495)
Q Consensus 1440 AHRl~ti~~~DrIlVL~~G~ivE~gsp~~Ll~~~~s~f~~lv~~~ 1484 (1495)
+||++++++||+|+|||+|+|+|+|+|+||++ +++.|+.++...
T Consensus 543 vH~l~ll~~~DkI~~l~nG~v~e~gth~ell~-~s~~~~~~w~~~ 586 (591)
T KOG0057|consen 543 VHRLDLLKDFDKIIVLDNGTVKEYGTHSELLA-PSELYADLWTTQ 586 (591)
T ss_pred EecchhHhcCCEEEEEECCeeEEeccHHHHhh-hhhHHHHHhccc
Confidence 99999999999999999999999999999998 778888887643
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-68 Score=675.85 Aligned_cols=527 Identities=17% Similarity=0.149 Sum_probs=425.5
Q ss_pred HHHHHHHHHHHHhhHHHHHhhcccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 000452 933 LLAQTLFQILQIASNYWIAWATPASKDIKPRVTGSMLLIVFVALAFGSSFCILARSTLLATAGYKTATLLFNKMHYCIFR 1012 (1495)
Q Consensus 933 ~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~ll~ 1012 (1495)
+++.++..++.++.++.+....+.............++.+++++.++..++.+++.++....+.+....++.++++++++
T Consensus 12 ~~~~~~~~~~~l~~p~~~~~iid~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~ 91 (544)
T TIGR01842 12 GLFSFVINILMLAPPLYMLQVYDRVLTSGSVPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALNQPIFAASFS 91 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34445666677777777775554221111111122344455556666778888888889999999999999999999999
Q ss_pred CCcccccccccccchhHHhcchhHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 1013 APMSFFDATPSGRIINRASTDQSAVDLSIPA-LIGSFAFSIIRVLGVIGVMSLVAWQVFIVFIPVIATCIWYQQYYISSA 1091 (1495)
Q Consensus 1013 ap~~ffd~tp~G~ilnR~s~D~~~vd~~l~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~ip~~~~~~~~~~~y~~~~ 1091 (1495)
.|+. ..|..++++++|++.+...+.. .+..++..++.++ .++++++.+|++.++++..+++.+.+..++.+..
T Consensus 92 ~~~~-----~~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~l~li~l~~~~l~~~i~~~~~~~~ 165 (544)
T TIGR01842 92 ATLR-----RGKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPI-YLLVCFLLHPWIGILALGGAVVLVGLALLNNRAT 165 (544)
T ss_pred Cccc-----CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 9984 2367789999999999987766 4444444444444 3466788888887765544444444555555555
Q ss_pred HHHHHHHHHhhhhHHHHHHHhhcchHHHHhhccHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 1092 RELSRLVGVCKAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGYSRPTFHVAAAMEWLGFRLDMLSNITFAFSLVF 1171 (1495)
Q Consensus 1092 r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~~~~~~~~~~ 1171 (1495)
+...+......+...+++.|+++|+++||+|+.|+.+.+++.+..++..+..........+......++..+...++..+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (544)
T TIGR01842 166 KKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRIVLQSLVLGL 245 (544)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666667788889999999999999999999999999999888887776665544444433333333333222222222
Q ss_pred -HHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCCCCCccccCCCCCCCCCcceEEE
Q 000452 1172 -LISIPKGFIDPAIAGLAVTYGLTLNNLQAMLIWLACQMENKIISVERIFQYTCIPSEPPLEIEESRPNHSWPSHGKIDL 1250 (1495)
Q Consensus 1172 -~~~~~~~~~~~~~~gl~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~f 1250 (1495)
......|.+++|.+..++.|...+...+..+...+..+.....+.+|+.++.+.++|.+.. ...+ +..+.|++
T Consensus 246 g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~---~~~~---~~~~~i~~ 319 (544)
T TIGR01842 246 GAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPA---MPLP---EPEGHLSV 319 (544)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCC---CCCC---CCCCeEEE
Confidence 2334478899999988999999999999999999999999999999999999876553211 1111 23468999
Q ss_pred eeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccEEEcc
Q 000452 1251 RDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSIIPQ 1330 (1495)
Q Consensus 1251 ~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~isiIpQ 1330 (1495)
+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|+|+++|++|+|.+||+|+.+++.+.+|++++|+||
T Consensus 320 ~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q 399 (544)
T TIGR01842 320 ENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQ 399 (544)
T ss_pred EEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecC
Confidence 99999997655679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcCCCCcHHHhcCCCC-CCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCeEEEE
Q 000452 1331 DPVMFEGTVRSNVDPLE-EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLD 1409 (1495)
Q Consensus 1331 dp~LF~GTIR~NLdp~~-~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALLr~~~ILiLD 1409 (1495)
||++|+||+|+|+..++ +++|++++++++.++++++++++|+|+||.++|+|.+||||||||++||||++++|+|||||
T Consensus 400 ~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililD 479 (544)
T TIGR01842 400 DVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLD 479 (544)
T ss_pred CcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99999999999998554 58999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhccCEEEEEeCcEEEEecChhHHhh
Q 000452 1410 EATASVDTATDNLIQQSLRQHF-SDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLE 1471 (1495)
Q Consensus 1410 EaTsslD~~Td~~Iq~~Ir~~f-~~~TVI~IAHRl~ti~~~DrIlVL~~G~ivE~gsp~~Ll~ 1471 (1495)
||||+||++|++.+.+.|++.. +++|+|+||||++++..||+|++|++|+++|.|+|++|++
T Consensus 480 Epts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 480 EPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred CCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 9999999999999999999875 6899999999999999999999999999999999999975
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-71 Score=621.94 Aligned_cols=490 Identities=22% Similarity=0.361 Sum_probs=410.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCcccccccccccchhHHhcchhHHHhhhHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 000452 988 STLLATAGYKTATLLFNKMHYCIFRAPMSFFDATPSGRIINRASTDQSAVDLSIPALIGSFAFSIIRVLGVIGVMS-LVA 1066 (1495)
Q Consensus 988 ~~~~~~~~~~~s~~l~~~ll~~ll~ap~~ffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~~~~~~~~~-~~~ 1066 (1495)
..++...+..+-+.+--+.+.++.+..+.|.-+..+|-+..-...-..-++..+...+...+-.++.+....+++. .++
T Consensus 3 ~~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~ 82 (497)
T COG5265 3 DRLFSPVGQIAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYG 82 (497)
T ss_pred hHhhhHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcc
Confidence 3455566677777788888999999999999888777554444444444444444455555555555444444433 457
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcchHHHHhhccHHHHHHHHHHHHHHhhchHHHH
Q 000452 1067 WQVFIVFIPVIATCIWYQQYYISSARELSRLVGVCKAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGYSRPTFHV 1146 (1495)
Q Consensus 1067 ~~~~~v~ip~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~ 1146 (1495)
|+++.+.+..+++|.++.-.-..-.-+.+|.-..+-+...+.-.+++-.-.|+|.|+.|+.+..++.+.++.+.++....
T Consensus 83 ~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~ 162 (497)
T COG5265 83 WWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKV 162 (497)
T ss_pred cHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHH
Confidence 88887777766666554433333333445555555666667778899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcC
Q 000452 1147 AAAMEWLGFRLDMLSNITFAFSLVF-LISIPKGFIDPAIAGLAVTYGLTLNNLQAMLIWLACQMENKIISVERIFQYTCI 1225 (1495)
Q Consensus 1147 ~~~~~wl~~rl~~l~~~~~~~~~~~-~~~~~~~~~~~~~~gl~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~ 1225 (1495)
+....||++--..+........... ...+..|.++.|...+.-.|..++..+++.+...+.++.+.....|++.+..+.
T Consensus 163 ~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~ 242 (497)
T COG5265 163 HVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDV 242 (497)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhcc
Confidence 8888898887666554433322222 223456788999999999999999999999999999999999999999999887
Q ss_pred CCCCCCccccCCCCCCCC-CcceEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCcc
Q 000452 1226 PSEPPLEIEESRPNHSWP-SHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAG 1304 (1495)
Q Consensus 1226 ~~E~~~~~~~~~~~~~wp-~~g~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G 1304 (1495)
+.|.. +....++-|| ..|.|.|+||+|.|.|+.| +|+|+||++++|+++||||++|+||||+.++|+|+|++++|
T Consensus 243 ~~~v~---d~pda~~L~~~~~g~v~F~~V~F~y~~~r~-iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG 318 (497)
T COG5265 243 EAEVS---DAPDAPPLWPVRLGAVAFINVSFAYDPRRP-ILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSG 318 (497)
T ss_pred chhhc---cCCCCccccccccceEEEEEEEeeccccch-hhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCc
Confidence 76643 2223445675 4688999999999998865 99999999999999999999999999999999999999999
Q ss_pred EEEEcCEeCCCCCHHHHhcccEEEcccCcCCCCcHHHhcCCCC-CCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCC
Q 000452 1305 QILIDGIDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNVDPLE-EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGE 1383 (1495)
Q Consensus 1305 ~I~IDG~dI~~i~l~~LR~~isiIpQdp~LF~GTIR~NLdp~~-~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~ 1383 (1495)
.|.|||+||..+..+.||+.||+||||.+||+.|+..|+...+ +.+++|++.|++.++++++|+++|+|+||.|||.|-
T Consensus 319 ~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vgergl 398 (497)
T COG5265 319 SITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGL 398 (497)
T ss_pred eEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchhee
Confidence 9999999999999999999999999999999999999998654 799999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhccCEEEEEeCcEEEEe
Q 000452 1384 NWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEY 1463 (1495)
Q Consensus 1384 nLS~GQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~ivE~ 1463 (1495)
.||||||||+++||++||+|+||+||||||+||..||+.||.+|++..+++|.++|||||+||.|+|.|+||++|+|+|.
T Consensus 399 klSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~er 478 (497)
T COG5265 399 KLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVER 478 (497)
T ss_pred eccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhHHhhcCCChHHHHHH
Q 000452 1464 DSPRKLLENKSSSFSQLVA 1482 (1495)
Q Consensus 1464 gsp~~Ll~~~~s~f~~lv~ 1482 (1495)
|+|++|+++ +|.|++|+.
T Consensus 479 g~h~~ll~~-~g~ya~mw~ 496 (497)
T COG5265 479 GTHEELLAA-GGLYAEMWR 496 (497)
T ss_pred CcHHHHHHc-CChHHHHhc
Confidence 999999986 799999975
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-68 Score=642.82 Aligned_cols=549 Identities=23% Similarity=0.284 Sum_probs=449.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 292 IKAMFRSVWKDVLLTALVAIVCTLATYVGPYLIDTLVQYLSG-KRDFENEGYALVSAFCVAKLVECLCQRFFVFRLEQLG 370 (1495)
Q Consensus 292 ~~al~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~-~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~g 370 (1495)
++.+.+..|+.+..+.++.++........|+++.++++.+.. .+.. ..-.-....+....++.+++.....+..+..+
T Consensus 138 l~~l~~~~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~~~-~~~~~~~~~l~~l~~~~a~~~~~r~~~~~~a~ 216 (716)
T KOG0058|consen 138 LLGLLKPEWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDDSA-DALKRACTILLGLFLIGALANAIRGGLLQYAG 216 (716)
T ss_pred HHHHhchhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566678889999999999999999999999999998876 2221 11112233344455566777766666677778
Q ss_pred HHHHHHHHHHHHHHHhcCCcchhcCCCHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 371 IRLRAALIAMIYNKGLKLSSQAKQGNTSGEIINFMTVDAERVAEL-SWYIHDPWLFLFEVALSFLILYKSLGIASVAAFF 449 (1495)
Q Consensus 371 ~rir~~L~~~iy~K~L~ls~~~~~~~~~G~i~nl~s~D~~~i~~~-~~~~~~~w~~pl~i~~~~~lL~~~lG~~~l~gl~ 449 (1495)
.|+-..++..+|++.++.....++++.+||++++++.|++.+.+. ..++.+..-..+|.+.++.+++..----+++.++
T Consensus 217 ~rv~~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~Ltlv~~i 296 (716)
T KOG0058|consen 217 ERVVARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRLTLVTLI 296 (716)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHH
Confidence 888888888999999999999999999999999999999999875 5577777778888888887776544334455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 450 GTVIFMLVNVPLSTVQEKFQNELMKSKDERMKATSEILRNMRILKLQGWELKFLSKTIDLRKSESGWLKRCLYTSSITSF 529 (1495)
Q Consensus 450 ~~i~~~~~~~~~~~~~~~~~~~~m~~~D~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~ 529 (1495)
.+-+++.+..++++++++..++..++..+-.+...|.|++||++|.|+-|+.-.++-.+.=++-++..+|......+...
T Consensus 297 ~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a~~~f~~ 376 (716)
T KOG0058|consen 297 VVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVAYGIFFG 376 (716)
T ss_pred HhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHhHh
Confidence 55556666777788888888888888888889999999999999999999865444332222222222222222111111
Q ss_pred H--HHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccc
Q 000452 530 V--FWCAPTFVSVITFGTCILLKVPLESGKVLSAIATFRLLQILIYKLPAIISMTIQTKVSLQRIASFFCLDELQPDLVE 607 (1495)
Q Consensus 530 ~--~~~~p~~v~~~~f~~~~~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~~~ 607 (1495)
. +...-..++++.+|.+.+.++.+|+|...+++.+-..+..++..+....+.++++..+.+|+.+|++.+..-+..-.
T Consensus 377 ~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~~G~ 456 (716)
T KOG0058|consen 377 STNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPLTGT 456 (716)
T ss_pred HHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCCCCCc
Confidence 1 11223456777888899999999999999999999999999999999999999999999999999986543222111
Q ss_pred CCCCCCCcccEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe-----
Q 000452 608 KQPRGSSETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT----- 682 (1495)
Q Consensus 608 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~----- 682 (1495)
..|. .-.+.|+++|++|+|+..++.++|+|+||+|+|||.||+||||||||||+.++|+.+|+|++|+|.+||.
T Consensus 457 ~~p~-~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~ 535 (716)
T KOG0058|consen 457 LAPD-HLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDI 535 (716)
T ss_pred cccc-cccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhc
Confidence 1232 3456899999999999888889999999999999999999999999999999999999999999999994
Q ss_pred --------EEEEccCCcccCccHHHHHhcCCC-CCHHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHH
Q 000452 683 --------KAYVAQSPWIQSGKIEDNILFGKE-MDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQI 753 (1495)
Q Consensus 683 --------~ayv~Q~~~l~~~ti~enI~fg~~-~~~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 753 (1495)
+|+|.|+|-+|++||+|||.+|.+ .++|+.+++.+.+..++++..+|+|++|.+||+|..|||||||||||
T Consensus 536 ~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAI 615 (716)
T KOG0058|consen 536 NHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAI 615 (716)
T ss_pred CHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHH
Confidence 699999999999999999999986 57788999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEecCCCccccCCEEEEEeCCEEEEecChHHHHhcC-
Q 000452 754 ARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVINSG- 832 (1495)
Q Consensus 754 ARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~- 832 (1495)
||||++||.|+||||.|||||++. +++.++.+....+++|||+|.|+++.++.||+|+++++|++++.|+++|+++..
T Consensus 616 ARALlr~P~VLILDEATSALDaeS-E~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h~eLl~~~~ 694 (716)
T KOG0058|consen 616 ARALLRNPRVLILDEATSALDAES-EYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHDELLSKPN 694 (716)
T ss_pred HHHHhcCCCEEEEechhhhcchhh-HHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecccHHHHhhCcc
Confidence 999999999999999999999987 556678888888899999999999999999999999999999999999999887
Q ss_pred CchhHHHHHHH
Q 000452 833 TDFMELVDAHK 843 (1495)
Q Consensus 833 ~~~~~l~~~~~ 843 (1495)
+.|.++++.+.
T Consensus 695 gly~~Lv~~q~ 705 (716)
T KOG0058|consen 695 GLYAKLVQRQL 705 (716)
T ss_pred cHHHHHHHHhc
Confidence 57888887543
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-67 Score=665.95 Aligned_cols=549 Identities=22% Similarity=0.313 Sum_probs=475.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 288 TLKLIKAMFRSVWKDVLLTALVAIVCTLATYVGPYLIDTLVQYLSGKRDFENEGYALVSAFCVAKLVECLCQRFFVFRLE 367 (1495)
Q Consensus 288 ~~~l~~al~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~ 367 (1495)
..+.++..++-+|+.+.-.++..++..++.++.|++.+.++|.+-...+ ...-..+++++.+..+++.++.....|...
T Consensus 141 ~~~~f~~~~~~~~~~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~-~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~ 219 (709)
T COG2274 141 GLSWFIPLLFKYRRLLFEVLLASLLLQLLALATPLFSQIVIDKVLPDAS-RSTLTVLAIGLLLAALFEALLRLLRTYLIA 219 (709)
T ss_pred chHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777788888888899999999999999999999998865443 334566777788888889898888888999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcchhcCCCHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 368 QLGIRLRAALIAMIYNKGLKLSSQAKQGNTSGEIINFMTVDAERVAELSW-YIHDPWLFLFEVALSFLILYKSLGIASVA 446 (1495)
Q Consensus 368 ~~g~rir~~L~~~iy~K~L~ls~~~~~~~~~G~i~nl~s~D~~~i~~~~~-~~~~~w~~pl~i~~~~~lL~~~lG~~~l~ 446 (1495)
+++.|+...+...+|+|.|+++...++++++|+++++++ |.+.|.++.. .+.......+-.++.+.+++.+-+.-+++
T Consensus 220 ~~~~rld~~l~~~~~~hll~Lpl~~f~~r~~Ge~~sR~~-el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L~li 298 (709)
T COG2274 220 HLGKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLI 298 (709)
T ss_pred HHHHHHhHHHHHHHHHHHHcCcHHHccCCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999995 9999998754 33444444444555666677777778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 447 AFFGTVIFMLVNVPLSTVQEKFQNELMKSKDERMKATSEILRNMRILKLQGWELKFLSKTIDLRKSESGWLKRCLYTSSI 526 (1495)
Q Consensus 447 gl~~~i~~~~~~~~~~~~~~~~~~~~m~~~D~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~ 526 (1495)
+++.+++.+.+..++.+..++..++.++...++-+.+.|.++||++||..+-|+.+..++++.-.+..+.-.+.......
T Consensus 299 ~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~ 378 (709)
T COG2274 299 VLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALI 378 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 88888888888899999999999999999999999999999999999999999999999988887777776666665554
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc
Q 000452 527 TSFVFWCAPTF--VSVITFGTCILLKVPLESGKVLSAIATFRLLQILIYKLPAIISMTIQTKVSLQRIASFFCLDELQPD 604 (1495)
Q Consensus 527 ~~~~~~~~p~~--v~~~~f~~~~~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~ 604 (1495)
........+.+ +.+++||++.++.+.+|.|..+++.++...+..|+..+.+....+.+++++.+|+.+.++.|..++.
T Consensus 379 ~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~ 458 (709)
T COG2274 379 LNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEG 458 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence 44433333322 4567899999999999999999999999999999999999999999999999999999988755332
Q ss_pred cccCCCCCCCcccEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe--
Q 000452 605 LVEKQPRGSSETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-- 682 (1495)
Q Consensus 605 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~-- 682 (1495)
...........+.|+++|++|.|..++ .++|+|+||+|++||++||+|+||||||||+|+|+|.++|++|+|.+||.
T Consensus 459 ~~~~~~~~~~~g~I~~~nvsf~y~~~~-~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl 537 (709)
T COG2274 459 DKTLIHLPKLQGEIEFENVSFRYGPDD-PPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDL 537 (709)
T ss_pred ccccccccccCceEEEEEEEEEeCCCC-cchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeH
Confidence 211111223346799999999998543 47999999999999999999999999999999999999999999999993
Q ss_pred -----------EEEEccCCcccCccHHHHHhcCCCC-CHHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHH
Q 000452 683 -----------KAYVAQSPWIQSGKIEDNILFGKEM-DRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQR 750 (1495)
Q Consensus 683 -----------~ayv~Q~~~l~~~ti~enI~fg~~~-~~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqR 750 (1495)
++||+|++.+|+|||+|||.++.|. +.|+..++++..+.++++..+|.|++|.+||+|.+||||||||
T Consensus 538 ~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQr 617 (709)
T COG2274 538 NDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQR 617 (709)
T ss_pred HhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHH
Confidence 6999999999999999999999875 4478888888899999999999999999999999999999999
Q ss_pred HHHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEecCCCccccCCEEEEEeCCEEEEecChHHHHh
Q 000452 751 IQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVIN 830 (1495)
Q Consensus 751 v~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~ 830 (1495)
++||||++++|+|+||||||||||+++++.+.++ +.....|+|+|+|||++..+..||+|+||++|+|+++|+++|+++
T Consensus 618 lalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~-L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~ 696 (709)
T COG2274 618 LALARALLSKPKILLLDEATSALDPETEAIILQN-LLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLA 696 (709)
T ss_pred HHHHHHhccCCCEEEEeCcccccCHhHHHHHHHH-HHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHH
Confidence 9999999999999999999999999999999876 455667899999999999999999999999999999999999999
Q ss_pred cCCchhHHHH
Q 000452 831 SGTDFMELVD 840 (1495)
Q Consensus 831 ~~~~~~~l~~ 840 (1495)
.++.|.++..
T Consensus 697 ~~g~y~~l~~ 706 (709)
T COG2274 697 QGGLYARLYQ 706 (709)
T ss_pred hcChHHHHHh
Confidence 8887777654
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-68 Score=726.33 Aligned_cols=568 Identities=16% Similarity=0.194 Sum_probs=448.6
Q ss_pred cCchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhcccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 000452 909 GKVEFSVYWKYITAAYGGVLVPFILLAQTLFQILQIASNYWIAWATPASKDIKPRVTGSMLLIVFVALAFGSSFCILARS 988 (1495)
Q Consensus 909 g~v~~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~ 988 (1495)
..+++...++|........ +.+.+++.++..+.....++.+....+... .......+...+++++++..++.+++.
T Consensus 43 ~~~~~~~~~~~~~~~~~~~-~~i~~i~~~~~~~~~p~~~~i~g~iid~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~~ 118 (1466)
T PTZ00265 43 QKIPFFLPFKCLPASHRKL-LGVSFVCATISGGTLPFFVSVFGVIMKNMN---LGENVNDIIFSLVLIGIFQFILSFISS 118 (1466)
T ss_pred ccccHHHHHhcCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455554455544333222 222233333333444444444443332110 111223445566677788888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCcccccccccccchhHHhcchhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 989 TLLATAGYKTATLLFNKMHYCIFRAPMSFFDATPSGRIINRASTDQSAVDLSIPALIGSFAFSIIRVLGVIGVMSLVAWQ 1068 (1495)
Q Consensus 989 ~~~~~~~~~~s~~l~~~ll~~ll~ap~~ffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 1068 (1495)
++....+.+...+++.++++++++.|++|||..+.|++.+|++.|++.+...+...+..++..++.+++.++++++.+|.
T Consensus 119 ~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~~sw~ 198 (1466)
T PTZ00265 119 FCMDVVTTKILKTLKLEFLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLFKNAR 198 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcchHHHHhhccHHHHHHHHHHHHHHhhchHHHHHH
Q 000452 1069 VFIVFIPVIATCIWYQQYYISSARELSRLVGVCKAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGYSRPTFHVAA 1148 (1495)
Q Consensus 1069 ~~~v~ip~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~ 1148 (1495)
++++++.++++++++..++.+..+...+......+...+.+.|+++|++|||+|+.|+++.+++.+..+.+.+.......
T Consensus 199 Lalv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~ 278 (1466)
T PTZ00265 199 LTLCITCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANF 278 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888777777777777777777777777777778899999999999999999999999999999888877776655544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HhcC--------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 000452 1149 AMEWLGFRLDMLSNITFAFSLVFLI-SIPK--------GFIDPAIAGLAVTYGLTLNNLQAMLIWLACQMENKIISVERI 1219 (1495)
Q Consensus 1149 ~~~wl~~rl~~l~~~~~~~~~~~~~-~~~~--------~~~~~~~~gl~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi 1219 (1495)
...+......++..+..+++.++.. .... +.+++|.+...+.+.+.....+..+...+..+.....|.+|+
T Consensus 279 ~~~~~~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri 358 (1466)
T PTZ00265 279 MESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSL 358 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444333333332222222222211 1112 234555443333333332333344556677888999999999
Q ss_pred HHHhcCCCCCCCccccCCCCCCCCCcceEEEeeeeEEeCCCC-CcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcc
Q 000452 1220 FQYTCIPSEPPLEIEESRPNHSWPSHGKIDLRDLQVRYAPHM-PFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRI 1298 (1495)
Q Consensus 1220 ~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nv~~~Y~~~~-~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl 1298 (1495)
.+.++.+++.+.. . .....|..+.|+|+||+|+|+... .+||+|+||+|++||++||||+||||||||+++|.|+
T Consensus 359 ~~ii~~~~~~~~~-~---~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl 434 (1466)
T PTZ00265 359 YEIINRKPLVENN-D---DGKKLKDIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERL 434 (1466)
T ss_pred HHHHcCCCCCCCC-C---CCccCCCCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 9999876553211 1 111123345899999999997532 3699999999999999999999999999999999999
Q ss_pred ccCCccEEEE-cCEeCCCCCHHHHhcccEEEcccCcCCCCcHHHhcCCC-------------------------------
Q 000452 1299 VEPAAGQILI-DGIDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNVDPL------------------------------- 1346 (1495)
Q Consensus 1299 ~ep~~G~I~I-DG~dI~~i~l~~LR~~isiIpQdp~LF~GTIR~NLdp~------------------------------- 1346 (1495)
|+|++|+|.| ||.|+++++.+++|++|++|||+|.||++||++||...
T Consensus 435 ~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (1466)
T PTZ00265 435 YDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSC 514 (1466)
T ss_pred ccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccc
Confidence 9999999999 57999999999999999999999999999999999642
Q ss_pred ---------------------------CCCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHH
Q 000452 1347 ---------------------------EEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVL 1399 (1495)
Q Consensus 1347 ---------------------------~~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAL 1399 (1495)
.+.+|+++++|++++++++++.++|+|+||.++++|.+||||||||++|||||
T Consensus 515 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAl 594 (1466)
T PTZ00265 515 RAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAI 594 (1466)
T ss_pred cccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHH
Confidence 13578999999999999999999999999999999999999999999999999
Q ss_pred ccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCchhhhccCEEEEEeCc-------------------
Q 000452 1400 LKRRKILMLDEATASVDTATDNLIQQSLRQHF--SDCTVITIAHRITSVIDSDMVLLLSHG------------------- 1458 (1495)
Q Consensus 1400 Lr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f--~~~TVI~IAHRl~ti~~~DrIlVL~~G------------------- 1458 (1495)
+++|+|||||||||+||++++..|++.|++.. +++|+|+||||++++..||+|+||++|
T Consensus 595 l~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~~~~ 674 (1466)
T PTZ00265 595 IRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTKDN 674 (1466)
T ss_pred hcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCccccccccccccccccccc
Confidence 99999999999999999999999999999885 489999999999999999999999986
Q ss_pred ----------------------------EEEEecChhHHhhcCCChHHHHHHHH
Q 000452 1459 ----------------------------LIEEYDSPRKLLENKSSSFSQLVAEY 1484 (1495)
Q Consensus 1459 ----------------------------~ivE~gsp~~Ll~~~~s~f~~lv~~~ 1484 (1495)
+|+|+|+|+||+++++|.|+.|++..
T Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q 728 (1466)
T PTZ00265 675 KENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQ 728 (1466)
T ss_pred cccccccccccccccccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhh
Confidence 59999999999986789999999654
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-67 Score=681.67 Aligned_cols=544 Identities=18% Similarity=0.222 Sum_probs=454.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 290 KLIKAMFRSVWKDVLLTALVAIVCTLATYVGPYLIDTLVQYLSGKRDFENEGYALVSAFCVAKLVECLCQRFFVFRLEQL 369 (1495)
Q Consensus 290 ~l~~al~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 369 (1495)
..++..++.+++.+....+..++..++.++.|++++.++|.+..... ....+.++++++++.++..++.....+...++
T Consensus 143 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (710)
T TIGR03796 143 RALWRRLRGSRGALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGR-QDWLRPLLLGMGLTALLQGVLTWLQLYYLRRL 221 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667778888888888999999999999999999997754332 22234455555566666777777778888899
Q ss_pred HHHHHHHHHHHHHHHHhcCCcchhcCCCHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 370 GIRLRAALIAMIYNKGLKLSSQAKQGNTSGEIINFMTVDAERVAELSW-YIHDPWLFLFEVALSFLILYKSLGIASVAAF 448 (1495)
Q Consensus 370 g~rir~~L~~~iy~K~L~ls~~~~~~~~~G~i~nl~s~D~~~i~~~~~-~~~~~w~~pl~i~~~~~lL~~~lG~~~l~gl 448 (1495)
+.++...+...+|+|.++++.....++++|+++|+++.| +.+.+++. .+..+....+.+++.+++++..-++.+++.+
T Consensus 222 ~~~~~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l 300 (710)
T TIGR03796 222 QIKLAVGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLIGI 300 (710)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998999999999999988 67887653 4455556666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 449 FGTVIFMLVNVPLSTVQEKFQNELMKSKDERMKATSEILRNMRILKLQGWELKFLSKTIDLRKSESGWLKRCLYTSSITS 528 (1495)
Q Consensus 449 ~~~i~~~~~~~~~~~~~~~~~~~~m~~~D~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~~ 528 (1495)
+.+++.+.+...+.+...+..++.++..+++.+.+.|.++|+++||.+++|+.+.+++.+.+.++.+...+.........
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (710)
T TIGR03796 301 AFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILG 380 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666677777788888888899999999999999999999999999999999999999888877776665555444333
Q ss_pred HHHHHHHH--HHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccc
Q 000452 529 FVFWCAPT--FVSVITFGTCILLKVPLESGKVLSAIATFRLLQILIYKLPAIISMTIQTKVSLQRIASFFCLDELQPDLV 606 (1495)
Q Consensus 529 ~~~~~~p~--~v~~~~f~~~~~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~~ 606 (1495)
.+...... .+.++.++.+.+.++.+|.|.+++++.++..+..|+..++..+..+.+++++++|+.++++.++..+...
T Consensus 381 ~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~ 460 (710)
T TIGR03796 381 VLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEE 460 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccc
Confidence 32222222 2334567778888899999999999999999999999999999999999999999999998764332211
Q ss_pred ----c--CCCCCCCcccEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEc
Q 000452 607 ----E--KQPRGSSETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLC 680 (1495)
Q Consensus 607 ----~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~ 680 (1495)
. ..+.......|+++|++|+|+.. ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+|
T Consensus 461 ~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~id 539 (710)
T TIGR03796 461 EEAPAAGSEPSPRLSGYVELRNITFGYSPL-EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFD 539 (710)
T ss_pred ccccccccccCCCCCCeEEEEEEEEecCCC-CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEC
Confidence 0 01101123479999999999743 4689999999999999999999999999999999999999999999999
Q ss_pred Ce-------------EEEEccCCcccCccHHHHHhcCC-CCCHHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchH
Q 000452 681 GT-------------KAYVAQSPWIQSGKIEDNILFGK-EMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGG 746 (1495)
Q Consensus 681 g~-------------~ayv~Q~~~l~~~ti~enI~fg~-~~~~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGG 746 (1495)
|. ++||||+|++|++||+|||.++. +.+++++.++++.++++++++.+|+|++|.+||+|.+||||
T Consensus 540 g~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGG 619 (710)
T TIGR03796 540 GIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGG 619 (710)
T ss_pred CEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHH
Confidence 83 69999999999999999999876 47899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEecCCCccccCCEEEEEeCCEEEEecChH
Q 000452 747 QKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYT 826 (1495)
Q Consensus 747 QkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~~~d~i~~l~~G~i~~~g~~~ 826 (1495)
|||||+||||++++|+|+||||||||||+++++++++.+.. .++|+|+|||+++.+..||+|++|++|++++.|+++
T Consensus 620 QrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~ 696 (710)
T TIGR03796 620 QRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHE 696 (710)
T ss_pred HHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHH
Confidence 99999999999999999999999999999999999876543 589999999999999999999999999999999999
Q ss_pred HHHhcCCchhHHH
Q 000452 827 DVINSGTDFMELV 839 (1495)
Q Consensus 827 ~l~~~~~~~~~l~ 839 (1495)
|+++.++.|.+++
T Consensus 697 ~Ll~~~~~y~~l~ 709 (710)
T TIGR03796 697 ELWAVGGAYARLI 709 (710)
T ss_pred HHHHcCCcHHHHh
Confidence 9998877777654
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-69 Score=644.73 Aligned_cols=465 Identities=27% Similarity=0.401 Sum_probs=360.6
Q ss_pred cEEEEeeEEEecCCCC-CCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCC----CcEEEEcCe---------
Q 000452 617 AIEIADGNFSWDISSH-NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKI----SGTLKLCGT--------- 682 (1495)
Q Consensus 617 ~i~~~~~~~~~~~~~~-~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~----~G~v~~~g~--------- 682 (1495)
.++++|++..|...+. .++++||||++.+||.+||+|++||||||+.++|+|..++. +|+|.++|+
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 6899999999975532 25999999999999999999999999999999999999987 899998883
Q ss_pred --------EEEEccCCcc-cC--ccHHHHH----hcCCCCC----HHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCcc
Q 000452 683 --------KAYVAQSPWI-QS--GKIEDNI----LFGKEMD----RERYNAVLDACSLEKDLEILSFGDQTVVGERGINL 743 (1495)
Q Consensus 683 --------~ayv~Q~~~l-~~--~ti~enI----~fg~~~~----~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~L 743 (1495)
+||++|+|+- +| .||.+-| ......+ +++..+.++..+|.+... . +.....|
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~-------~--~~yPheL 155 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPER-------R--DRYPHQL 155 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhh-------h--ccCCccc
Confidence 6999999852 33 3554444 3333222 223344455555543222 1 5678999
Q ss_pred chHHHHHHHHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHh--CCCEEEEEecCCCcccc-CCEEEEEeCCEEE
Q 000452 744 SGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL--NSKTVLYVTHQVEFLPA-ADLVLVIKDGKIT 820 (1495)
Q Consensus 744 SGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~--~~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~ 820 (1495)
||||||||.||+||..+|+++|+||||+|||+.++.+|.+. ++.+. .|.++|+||||++.+.+ ||+|+||++|+++
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~l-lk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iV 234 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDL-LKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIV 234 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHH-HHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEE
Confidence 99999999999999999999999999999999999999864 44443 48999999999999876 9999999999999
Q ss_pred EecChHHHHhcCC-chhHHHHHHHhhhcccccccCCCCCCCCCCCCCCCCCCcccccccccccccccccccccccchhhh
Q 000452 821 QAGKYTDVINSGT-DFMELVDAHKQALSTLDSIEGRPLSEKGSANGENDGTSATDGVVKEVENKEVQNDREDKVAEPQRQ 899 (1495)
Q Consensus 821 ~~g~~~~l~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 899 (1495)
+.|+.++++++.. .|..-+
T Consensus 235 E~G~~~~i~~~p~hpYT~~L------------------------------------------------------------ 254 (539)
T COG1123 235 ETGPTEEILSNPQHPYTRGL------------------------------------------------------------ 254 (539)
T ss_pred EecCHHHHHhccCCcccHHH------------------------------------------------------------
Confidence 9999999875321 000000
Q ss_pred hhHHHHHhhcCchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhcccCCCCCCCcchhHHHHHHHHHHHH
Q 000452 900 LVQEEEREKGKVEFSVYWKYITAAYGGVLVPFILLAQTLFQILQIASNYWIAWATPASKDIKPRVTGSMLLIVFVALAFG 979 (1495)
Q Consensus 900 ~~~~e~~~~g~v~~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~y~~l~~~ 979 (1495)
. .+ .|.....
T Consensus 255 -l-------------------~a--------------------------------------~p~~~~~------------ 264 (539)
T COG1123 255 -L-------------------AA--------------------------------------VPRLGDE------------ 264 (539)
T ss_pred -H-------------------hh--------------------------------------CCCcccc------------
Confidence 0 00 0000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccccccccccchhHHhcchhHHHhhhHHHHHHHHHHHHHHHHHH
Q 000452 980 SSFCILARSTLLATAGYKTATLLFNKMHYCIFRAPMSFFDATPSGRIINRASTDQSAVDLSIPALIGSFAFSIIRVLGVI 1059 (1495)
Q Consensus 980 ~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~ll~ap~~ffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~~~~~ 1059 (1495)
T Consensus 265 -------------------------------------------------------------------------------- 264 (539)
T COG1123 265 -------------------------------------------------------------------------------- 264 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcchHHHHhhccHHHHHHHHHHHHHHh
Q 000452 1060 GVMSLVAWQVFIVFIPVIATCIWYQQYYISSARELSRLVGVCKAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGY 1139 (1495)
Q Consensus 1060 ~~~~~~~~~~~~v~ip~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~ 1139 (1495)
T Consensus 265 -------------------------------------------------------------------------------- 264 (539)
T COG1123 265 -------------------------------------------------------------------------------- 264 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 000452 1140 SRPTFHVAAAMEWLGFRLDMLSNITFAFSLVFLISIPKGFIDPAIAGLAVTYGLTLNNLQAMLIWLACQMENKIISVERI 1219 (1495)
Q Consensus 1140 ~~~~~~~~~~~~wl~~rl~~l~~~~~~~~~~~~~~~~~~~~~~~~~gl~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi 1219 (1495)
..
T Consensus 265 -------------------------------------~~----------------------------------------- 266 (539)
T COG1123 265 -------------------------------------KI----------------------------------------- 266 (539)
T ss_pred -------------------------------------cc-----------------------------------------
Confidence 00
Q ss_pred HHHhcCCCCCCCccccCCCCCCCCCcceEEEeeeeEEeCC---------CCCcceeeeeEEeeCCcEEEEEcCCCCCHHH
Q 000452 1220 FQYTCIPSEPPLEIEESRPNHSWPSHGKIDLRDLQVRYAP---------HMPFVLRGISCTFPGEKKTGIVGRTGSGKST 1290 (1495)
Q Consensus 1220 ~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nv~~~Y~~---------~~~~vL~~Is~~I~~GekvgIVGrTGSGKST 1290 (1495)
...+.+.+ . +...-++++|++.+|.. +...+++||||++++||.+||||.|||||||
T Consensus 267 ---~~~~~~~~--------~---~~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKST 332 (539)
T COG1123 267 ---IRLPRRGP--------L---RAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKST 332 (539)
T ss_pred ---cccccccc--------c---ccCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHH
Confidence 00000000 0 01225789999999974 1246899999999999999999999999999
Q ss_pred HHHHHhccccCCccEEEEcCEe--CCCCCHHHHhcccEEEcccCcC--C-CCcHHHhcC-CCCC-------CCHHHHHHH
Q 000452 1291 LIQTLFRIVEPAAGQILIDGID--ISLIGLHDLRTRLSIIPQDPVM--F-EGTVRSNVD-PLEE-------YTDEQIWEA 1357 (1495)
Q Consensus 1291 Ll~~L~rl~ep~~G~I~IDG~d--I~~i~l~~LR~~isiIpQdp~L--F-~GTIR~NLd-p~~~-------~sd~ei~~a 1357 (1495)
|.++|+|+++|++|+|.++|.| .+.-....+|+++-+|.|||+- - ..||+++|. |... ..++.+-+.
T Consensus 333 lar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~l 412 (539)
T COG1123 333 LARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAEL 412 (539)
T ss_pred HHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHH
Confidence 9999999999999999999977 3333356688899999999963 2 459999985 4431 122357788
Q ss_pred HHHcCCcH-HHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcC--Cc
Q 000452 1358 LDKCQLGD-EVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFS--DC 1434 (1495)
Q Consensus 1358 L~~~~L~~-~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~--~~ 1434 (1495)
|++++|.+ +..+.| ..||||||||+||||||..+|++||+|||||+||+-+.+.|.+.|.+.-+ +.
T Consensus 413 l~~VgL~~~~l~ryP-----------~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~ 481 (539)
T COG1123 413 LELVGLPPEFLDRYP-----------HELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGL 481 (539)
T ss_pred HHHcCCCHHHHhcCc-----------hhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCC
Confidence 99999986 344444 46899999999999999999999999999999999999999998876543 69
Q ss_pred EEEEEecCchhhhc-cCEEEEEeCcEEEEecChhHHhhcCCChHHHHHHHH
Q 000452 1435 TVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLENKSSSFSQLVAEY 1484 (1495)
Q Consensus 1435 TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~Ll~~~~s~f~~lv~~~ 1484 (1495)
|.|+|+|+++.+.. ||||.||++|+|||.|+.++..+++...|.+..-+.
T Consensus 482 t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~~~~v~~~p~h~Ytr~L~~a 532 (539)
T COG1123 482 TYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFENPQHPYTRKLLAA 532 (539)
T ss_pred EEEEEeCCHHHHHhhCceEEEEECCeEEEeCCHHHHhcCCCChHHHHHHHh
Confidence 99999999999987 999999999999999999999998877777665443
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-66 Score=676.13 Aligned_cols=543 Identities=21% Similarity=0.256 Sum_probs=448.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 290 KLIKAMFRSVWKDVLLTALVAIVCTLATYVGPYLIDTLVQYLSGKRDFENEGYALVSAFCVAKLVECLCQRFFVFRLEQL 369 (1495)
Q Consensus 290 ~l~~al~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 369 (1495)
.+++..++.+++.++...++.++..++.++.|++++.++|.+..... ....+.++++++++.++..++.....+...++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (686)
T TIGR03797 125 DLLRFALRGARRDLLAILAMGLLGTLLGMLVPIATGILIGTAIPDAD-RSLLVQIALALLAAAVGAAAFQLAQSLAVLRL 203 (686)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666567788888888999999999999999999999998754322 22234445555666666777777777788899
Q ss_pred HHHHHHHHHHHHHHHHhcCCcchhcCCCHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 370 GIRLRAALIAMIYNKGLKLSSQAKQGNTSGEIINFMTVDAERVAELSWY-IHDPWLFLFEVALSFLILYKSLGIASVAAF 448 (1495)
Q Consensus 370 g~rir~~L~~~iy~K~L~ls~~~~~~~~~G~i~nl~s~D~~~i~~~~~~-~~~~w~~pl~i~~~~~lL~~~lG~~~l~gl 448 (1495)
+.++...+...+|+|.++++....+++++|+++|+++ |++.+.+++.. +.......+.+++++++++..-++.+++.+
T Consensus 204 ~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l 282 (686)
T TIGR03797 204 ETRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAV 282 (686)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999889999999999997 89999876543 223333333344555556655566666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 449 FGTVIFMLVNVPLSTVQEKFQNELMKSKDERMKATSEILRNMRILKLQGWELKFLSKTIDLRKSESGWLKRCLYTSSITS 528 (1495)
Q Consensus 449 ~~~i~~~~~~~~~~~~~~~~~~~~m~~~D~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~~ 528 (1495)
+++++..++...+.+...+..++.++..+++.+...|.++|+++||.++.|+.+.+++++..++..+...+.........
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (686)
T TIGR03797 283 ALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLT 362 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666777788888899999999999999999999999999999999999988887766655554444444443333
Q ss_pred HHHHHHHHH--HHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccc
Q 000452 529 FVFWCAPTF--VSVITFGTCILLKVPLESGKVLSAIATFRLLQILIYKLPAIISMTIQTKVSLQRIASFFCLDELQPDLV 606 (1495)
Q Consensus 529 ~~~~~~p~~--v~~~~f~~~~~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~~ 606 (1495)
.+......+ +.++.++.+.+.++.+|.|.++++.+++..+..|+..++..+..+.+++++++|+.++++.++..+...
T Consensus 363 ~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~ 442 (686)
T TIGR03797 363 VFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEAK 442 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCc
Confidence 332222222 233456677777889999999999999999999999999999999999999999999998754322111
Q ss_pred cCCCCCCCcccEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe----
Q 000452 607 EKQPRGSSETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT---- 682 (1495)
Q Consensus 607 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~---- 682 (1495)
. .+ ......|+++|++|+|+.+ ++++|+|+||++++||++||+|+||||||||+++|+|+++|++|+|.+||.
T Consensus 443 ~-~~-~~~~~~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~ 519 (686)
T TIGR03797 443 T-DP-GKLSGAIEVDRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAG 519 (686)
T ss_pred C-CC-CCCCceEEEEEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCc
Confidence 1 11 1123469999999999643 468999999999999999999999999999999999999999999999983
Q ss_pred ---------EEEEccCCcccCccHHHHHhcCCCCCHHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHH
Q 000452 683 ---------KAYVAQSPWIQSGKIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQI 753 (1495)
Q Consensus 683 ---------~ayv~Q~~~l~~~ti~enI~fg~~~~~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 753 (1495)
++||||+|++|++||+|||.+|.+.+++++.++++.|+++++++.+|+|++|.+||+|.+||||||||++|
T Consensus 520 ~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRial 599 (686)
T TIGR03797 520 LDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLI 599 (686)
T ss_pred CCHHHHHhccEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHH
Confidence 69999999999999999999998889999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEecCCCccccCCEEEEEeCCEEEEecChHHHHhcCC
Q 000452 754 ARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVINSGT 833 (1495)
Q Consensus 754 ARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 833 (1495)
|||++++|+|+|||||||+||+++++++.+.+ ... ++|+|+|||+++.+..||+|++|++|+|++.|+++|+++.++
T Consensus 600 ARAll~~p~iLiLDEpTS~LD~~te~~i~~~L-~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~~~~ 676 (686)
T TIGR03797 600 ARALVRKPRILLFDEATSALDNRTQAIVSESL-ERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAREG 676 (686)
T ss_pred HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHH-HHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHhCCc
Confidence 99999999999999999999999999998764 333 689999999999999999999999999999999999998887
Q ss_pred chhHHHH
Q 000452 834 DFMELVD 840 (1495)
Q Consensus 834 ~~~~l~~ 840 (1495)
.|.++..
T Consensus 677 ~y~~l~~ 683 (686)
T TIGR03797 677 LFAQLAR 683 (686)
T ss_pred HHHHHHH
Confidence 7887664
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-66 Score=671.69 Aligned_cols=538 Identities=21% Similarity=0.298 Sum_probs=446.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 289 LKLIKAMFRSVWKDVLLTALVAIVCTLATYVGPYLIDTLVQYLSGKRDFENEGYALVSAFCVAKLVECLCQRFFVFRLEQ 368 (1495)
Q Consensus 289 ~~l~~al~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~ 368 (1495)
.+.++..++.+++.+....++.++..++.++.|++++.++|.+..... ....+.+++++++..++..++.....+...+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (694)
T TIGR03375 135 KHWFWSTLKESWPLYRDVLIASLLINLLALASPLFVMNVYDRVVPNQA-FETLWVLAIGVALAIVFDFVLKTLRSYFLDV 213 (694)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677888888888899999999999999999999998754322 1223344444555556666777777778888
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcchhcCCCHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 369 LGIRLRAALIAMIYNKGLKLSSQAKQGNTSGEIINFMTVDAERVAELSWY-IHDPWLFLFEVALSFLILYKSLGIASVAA 447 (1495)
Q Consensus 369 ~g~rir~~L~~~iy~K~L~ls~~~~~~~~~G~i~nl~s~D~~~i~~~~~~-~~~~w~~pl~i~~~~~lL~~~lG~~~l~g 447 (1495)
++.++...+...+|+|.++++... .+.++|++++++ +|++.+.+++.. +.......+.+++.+++++..-++.+++.
T Consensus 214 ~~~~~~~~l~~~~~~~ll~l~~~~-~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~ 291 (694)
T TIGR03375 214 AGKKADLILSAKLFERVLGLRMEA-RPASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPLVWVP 291 (694)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccc-CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 999999999999999999999877 678999999999 799999987543 22333333334444555555556666667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 448 FFGTVIFMLVNVPLSTVQEKFQNELMKSKDERMKATSEILRNMRILKLQGWELKFLSKTIDLRKSESGWLKRCLYTSSIT 527 (1495)
Q Consensus 448 l~~~i~~~~~~~~~~~~~~~~~~~~m~~~D~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~ 527 (1495)
++++.+.+++..++.+..++..++.++..+++.+.+.|.++|+++||.+++|+.+.+++.+..++..+...+........
T Consensus 292 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (694)
T TIGR03375 292 LVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLA 371 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777888888899999999999999999999999999999999999999999888877776666655555443
Q ss_pred HHHHHHHHH--HHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc
Q 000452 528 SFVFWCAPT--FVSVITFGTCILLKVPLESGKVLSAIATFRLLQILIYKLPAIISMTIQTKVSLQRIASFFCLDELQPDL 605 (1495)
Q Consensus 528 ~~~~~~~p~--~v~~~~f~~~~~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~ 605 (1495)
..+...... .+.++.++.+.+.++.+|.|.+++++.++..+..|+..++..+..+.+++++++|+.++++.++..+..
T Consensus 372 ~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~ 451 (694)
T TIGR03375 372 TNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEG 451 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Confidence 333222222 233456777888888999999999999999999999999999999999999999999999876543221
Q ss_pred ccCCCCCCCcccEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcC----
Q 000452 606 VEKQPRGSSETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG---- 681 (1495)
Q Consensus 606 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g---- 681 (1495)
....+.......|+++|++|+|+. .++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||
T Consensus 452 ~~~~~~~~~~~~I~~~~vsf~Y~~-~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~ 530 (694)
T TIGR03375 452 TRFLHRPRLQGEIEFRNVSFAYPG-QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIR 530 (694)
T ss_pred CCCCCCCCccceEEEEEEEEEeCC-CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhh
Confidence 111111112346999999999963 346799999999999999999999999999999999999999999999998
Q ss_pred ---------eEEEEccCCcccCccHHHHHhcCCC-CCHHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHH
Q 000452 682 ---------TKAYVAQSPWIQSGKIEDNILFGKE-MDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRI 751 (1495)
Q Consensus 682 ---------~~ayv~Q~~~l~~~ti~enI~fg~~-~~~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv 751 (1495)
.++||||+|++|++||+|||.++.+ .+++++.++++.++++++++.+|+|++|.+||+|.+||||||||+
T Consensus 531 ~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRl 610 (694)
T TIGR03375 531 QIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAV 610 (694)
T ss_pred hCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHH
Confidence 4699999999999999999999986 789999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEecCCCccccCCEEEEEeCCEEEEecChHHHHhc
Q 000452 752 QIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVINS 831 (1495)
Q Consensus 752 ~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 831 (1495)
+||||++++|+|+|||||||+||+++++++.+. +....+++|+|+|||+++.+..||+|++|++|++++.|+++|+++.
T Consensus 611 alARall~~p~iliLDE~Ts~LD~~te~~i~~~-l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 611 ALARALLRDPPILLLDEPTSAMDNRSEERFKDR-LKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 999999999999999999999999999999764 5666678999999999999999999999999999999999998754
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-66 Score=669.53 Aligned_cols=539 Identities=20% Similarity=0.236 Sum_probs=427.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 295 MFRSVWKDVLLTALVAIVCTLATYVGPYLIDTLVQYLSGKRDFENEGYALVSAFCVAKLVECLCQRFFVFRLEQLGIRLR 374 (1495)
Q Consensus 295 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~g~rir 374 (1495)
+++.+|+.++...++.++..++..+.|+++..++|.+........ -...+..+++..++..++.....+.....+.++.
T Consensus 155 ~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 233 (711)
T TIGR00958 155 LSGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPA-LASAIFFMCLLSIASSVSAGLRGGSFNYTMARIN 233 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667778888889999999999999999999998864332111 1111222223333334444333444455667777
Q ss_pred HHHHHHHHHHHhcCCcchhcCCCHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 375 AALIAMIYNKGLKLSSQAKQGNTSGEIINFMTVDAERVAELSW-YIHDPWLFLFEVALSFLILYKSLGIASVAAFFGTVI 453 (1495)
Q Consensus 375 ~~L~~~iy~K~L~ls~~~~~~~~~G~i~nl~s~D~~~i~~~~~-~~~~~w~~pl~i~~~~~lL~~~lG~~~l~gl~~~i~ 453 (1495)
..+...+|+|.++.+....++.++|+++|+++.|++.+.+.+. .+..++...+++++++++++..-...+++.++.+.+
T Consensus 234 ~~lr~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l~l~~l~~~~l 313 (711)
T TIGR00958 234 LRIREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLPL 313 (711)
T ss_pred HHHHHHHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 7788899999999999988999999999999999999987653 556666777777777776665544445555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 454 FMLVNVPLSTVQEKFQNELMKSKDERMKATSEILRNMRILKLQGWELKFLSKTIDLRKSESGWLKRCLYTSSITSFVFWC 533 (1495)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~m~~~D~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~~~~ 533 (1495)
...+...+.+..++..++.++..++......|.++|+++||.|++|+.+.++..+..++-.+...+.....+....+...
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (711)
T TIGR00958 314 VFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWTTSV 393 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566677777888888888899999999999999999999999999877776655443333222222222221111111
Q ss_pred --HHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCCC
Q 000452 534 --APTFVSVITFGTCILLKVPLESGKVLSAIATFRLLQILIYKLPAIISMTIQTKVSLQRIASFFCLDELQPDLVEKQPR 611 (1495)
Q Consensus 534 --~p~~v~~~~f~~~~~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~~~~~~~ 611 (1495)
.-..+.++.++.+.+..+.+++|.+++++.++..+..|+..++..+..+.+++++.+||.++++.++..+......+.
T Consensus 394 ~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~ 473 (711)
T TIGR00958 394 LGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGTLAPL 473 (711)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 112233455677777888999999999999999999999999999999999999999999999875443221111111
Q ss_pred CCCcccEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcC----------
Q 000452 612 GSSETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG---------- 681 (1495)
Q Consensus 612 ~~~~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g---------- 681 (1495)
.....|+++|++|+|+..+++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||
T Consensus 474 -~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~ 552 (711)
T TIGR00958 474 -NLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHY 552 (711)
T ss_pred -CCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHH
Confidence 123469999999999754446899999999999999999999999999999999999999999999998
Q ss_pred ---eEEEEccCCcccCccHHHHHhcCCC-CCHHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHHHHHh
Q 000452 682 ---TKAYVAQSPWIQSGKIEDNILFGKE-MDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARAL 757 (1495)
Q Consensus 682 ---~~ayv~Q~~~l~~~ti~enI~fg~~-~~~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl 757 (1495)
.++||||+|++|++||||||.+|.+ .++++..++++.++++++++.+|+|++|.+||+|.+||||||||++||||+
T Consensus 553 lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARAL 632 (711)
T TIGR00958 553 LHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARAL 632 (711)
T ss_pred HHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHH
Confidence 3699999999999999999999965 678899999999999999999999999999999999999999999999999
Q ss_pred ccCCCEeEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEecCCCccccCCEEEEEeCCEEEEecChHHHHhcCCchhH
Q 000452 758 YQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVINSGTDFME 837 (1495)
Q Consensus 758 ~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 837 (1495)
+++|+|+|||||||+||+++++.+.+ ....+++|+|+|||+++.+..||+|++|++|+|++.|+++|++++++.|.+
T Consensus 633 l~~p~ILILDEpTSaLD~~te~~i~~---~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~~~~~~y~~ 709 (711)
T TIGR00958 633 VRKPRVLILDEATSALDAECEQLLQE---SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQGCYKH 709 (711)
T ss_pred hcCCCEEEEEccccccCHHHHHHHHH---hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHHhCCCchHh
Confidence 99999999999999999999888876 223468999999999999999999999999999999999999987766665
Q ss_pred H
Q 000452 838 L 838 (1495)
Q Consensus 838 l 838 (1495)
+
T Consensus 710 l 710 (711)
T TIGR00958 710 L 710 (711)
T ss_pred c
Confidence 4
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-68 Score=676.62 Aligned_cols=484 Identities=23% Similarity=0.363 Sum_probs=359.6
Q ss_pred ccEEEEeeEEEecCCC-CCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcC-------------
Q 000452 616 TAIEIADGNFSWDISS-HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG------------- 681 (1495)
Q Consensus 616 ~~i~~~~~~~~~~~~~-~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g------------- 681 (1495)
..++++|++++|.... ..++|+||||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 11 ~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~ 90 (623)
T PRK10261 11 DVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIEL 90 (623)
T ss_pred ceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEecccccccccc
Confidence 3699999999996322 34799999999999999999999999999999999999999999998754
Q ss_pred --------------eEEEEccCC--ccc-CccHHHHHhcCCC----CCH----HHHHHHHHHhCcHHHHhhcCCCCcccc
Q 000452 682 --------------TKAYVAQSP--WIQ-SGKIEDNILFGKE----MDR----ERYNAVLDACSLEKDLEILSFGDQTVV 736 (1495)
Q Consensus 682 --------------~~ayv~Q~~--~l~-~~ti~enI~fg~~----~~~----~~~~~vl~~~~l~~dl~~l~~gd~t~i 736 (1495)
.++||+|+| .++ ..||+|||.++.. .+. ++..++++..+|.+. ....
T Consensus 91 ~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~--------~~~~ 162 (623)
T PRK10261 91 SEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEA--------QTIL 162 (623)
T ss_pred ccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh--------hhHH
Confidence 379999998 344 4699999987531 222 234444555544210 1123
Q ss_pred cCCCCccchHHHHHHHHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHh-C-CCEEEEEecCCCcccc-CCEEEE
Q 000452 737 GERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL-N-SKTVLYVTHQVEFLPA-ADLVLV 813 (1495)
Q Consensus 737 g~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~-~~tvIlvTH~~~~l~~-~d~i~~ 813 (1495)
.+...+|||||||||+|||||+.+|+++||||||++||+.+.+.+.+ ++..+. + |+|+|+|||+++.+.. ||+|++
T Consensus 163 ~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~-ll~~l~~~~g~tvi~itHdl~~~~~~adri~v 241 (623)
T PRK10261 163 SRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQ-LIKVLQKEMSMGVIFITHDMGVVAEIADRVLV 241 (623)
T ss_pred hCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHH-HHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEE
Confidence 56788999999999999999999999999999999999999888875 454443 3 8999999999999865 999999
Q ss_pred EeCCEEEEecChHHHHhcCC-chhHHHHHHHhhhcccccccCCCCCCCCCCCCCCCCCCccccccccccccccccccccc
Q 000452 814 IKDGKITQAGKYTDVINSGT-DFMELVDAHKQALSTLDSIEGRPLSEKGSANGENDGTSATDGVVKEVENKEVQNDREDK 892 (1495)
Q Consensus 814 l~~G~i~~~g~~~~l~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 892 (1495)
|++|++++.|+++++..... .+..
T Consensus 242 l~~G~i~~~g~~~~~~~~~~~~~~~------------------------------------------------------- 266 (623)
T PRK10261 242 MYQGEAVETGSVEQIFHAPQHPYTR------------------------------------------------------- 266 (623)
T ss_pred eeCCeecccCCHHHhhcCCCChhhh-------------------------------------------------------
Confidence 99999999999877643210 0000
Q ss_pred ccchhhhhhHHHHHhhcCchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhcccCCCCCCCcchhHHHHH
Q 000452 893 VAEPQRQLVQEEEREKGKVEFSVYWKYITAAYGGVLVPFILLAQTLFQILQIASNYWIAWATPASKDIKPRVTGSMLLIV 972 (1495)
Q Consensus 893 ~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~ 972 (1495)
. ++.. .+....
T Consensus 267 ------~-------------------l~~~--------------------------------------~~~~~~------ 277 (623)
T PRK10261 267 ------A-------------------LLAA--------------------------------------VPQLGA------ 277 (623)
T ss_pred ------h-------------------hhhc--------------------------------------cCcccc------
Confidence 0 0000 000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccccccccccchhHHhcchhHHHhhhHHHHHHHHHHH
Q 000452 973 FVALAFGSSFCILARSTLLATAGYKTATLLFNKMHYCIFRAPMSFFDATPSGRIINRASTDQSAVDLSIPALIGSFAFSI 1052 (1495)
Q Consensus 973 y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~ll~ap~~ffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~ 1052 (1495)
+..+ ..| ++ .+.
T Consensus 278 ---------------------------------~~~~--~~~---------~~---------------~~~--------- 289 (623)
T PRK10261 278 ---------------------------------MKGL--DYP---------RR---------------FPL--------- 289 (623)
T ss_pred ---------------------------------cccc--cCC---------cc---------------ccc---------
Confidence 0000 000 00 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcchHHHHhhccHHHHHHHH
Q 000452 1053 IRVLGVIGVMSLVAWQVFIVFIPVIATCIWYQQYYISSARELSRLVGVCKAPLIQHFAETVSGSTTIRSFDQESRFIDTN 1132 (1495)
Q Consensus 1053 ~~~~~~~~~~~~~~~~~~~v~ip~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~ 1132 (1495)
T Consensus 290 -------------------------------------------------------------------------------- 289 (623)
T PRK10261 290 -------------------------------------------------------------------------------- 289 (623)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 1133 MELMDGYSRPTFHVAAAMEWLGFRLDMLSNITFAFSLVFLISIPKGFIDPAIAGLAVTYGLTLNNLQAMLIWLACQMENK 1212 (1495)
Q Consensus 1133 ~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~~~~~~~~~~~~~~~~~~~~~~~~gl~l~~~~~l~~~~~~~~~~~~~le~~ 1212 (1495)
..
T Consensus 290 -----------------------------------------------~~------------------------------- 291 (623)
T PRK10261 290 -----------------------------------------------IS------------------------------- 291 (623)
T ss_pred -----------------------------------------------cc-------------------------------
Confidence 00
Q ss_pred hhHHHHHHHHhcCCC-CCCCccccCCCCCCCCCcceEEEeeeeEEeCCC---------CCcceeeeeEEeeCCcEEEEEc
Q 000452 1213 IISVERIFQYTCIPS-EPPLEIEESRPNHSWPSHGKIDLRDLQVRYAPH---------MPFVLRGISCTFPGEKKTGIVG 1282 (1495)
Q Consensus 1213 ~~sveRi~~~~~~~~-E~~~~~~~~~~~~~wp~~g~I~f~nv~~~Y~~~---------~~~vL~~Is~~I~~GekvgIVG 1282 (1495)
...+. +++..... ..+ +...-++++|++++|+.. ...+|+||||+|++||++||+|
T Consensus 292 ----------~~~~~~~~~~~~~~-~~~---~~~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG 357 (623)
T PRK10261 292 ----------LEHPAKQEPPIEQD-TVV---DGEPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVG 357 (623)
T ss_pred ----------cccccccCcccccc-ccc---CCCceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEEC
Confidence 00000 00000000 000 011259999999999621 1359999999999999999999
Q ss_pred CCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHH---HHhcccEEEcccC--cCCCC-cHHHhcCC-C---CCCC--
Q 000452 1283 RTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLH---DLRTRLSIIPQDP--VMFEG-TVRSNVDP-L---EEYT-- 1350 (1495)
Q Consensus 1283 rTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~---~LR~~isiIpQdp--~LF~G-TIR~NLdp-~---~~~s-- 1350 (1495)
+||||||||+++|.|+.+|++|+|.++|.++...+.. .+|++++||||+| .++.. ||++|+.. . +..+
T Consensus 358 ~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~ 437 (623)
T PRK10261 358 ESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGK 437 (623)
T ss_pred CCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHH
Confidence 9999999999999999999999999999999877643 4678899999998 47654 99999852 1 1111
Q ss_pred --HHHHHHHHHHcCCc-HHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHH
Q 000452 1351 --DEQIWEALDKCQLG-DEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSL 1427 (1495)
Q Consensus 1351 --d~ei~~aL~~~~L~-~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I 1427 (1495)
++++.++|+.+++. +...+.| ..||||||||++|||||+.+|+||||||||++||..+.+.|.+.|
T Consensus 438 ~~~~~~~~~L~~~gL~~~~~~~~~-----------~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll 506 (623)
T PRK10261 438 AAAARVAWLLERVGLLPEHAWRYP-----------HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLL 506 (623)
T ss_pred HHHHHHHHHHHHcCCCHHHhhCCc-----------ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 24577888888885 3333332 469999999999999999999999999999999999999999999
Q ss_pred HHhcC--CcEEEEEecCchhhhc-cCEEEEEeCcEEEEecChhHHhhcCCChHH-HHHHH
Q 000452 1428 RQHFS--DCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLENKSSSFS-QLVAE 1483 (1495)
Q Consensus 1428 r~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~Ll~~~~s~f~-~lv~~ 1483 (1495)
++..+ +.|||+|||+++.+.. ||||++|++|+|+|.|++++++.++...|. .++..
T Consensus 507 ~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~g~~~~i~~~p~~~~~~~l~~~ 566 (623)
T PRK10261 507 LDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFENPQHPYTRKLMAA 566 (623)
T ss_pred HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhcCCCCHHHHHHHhh
Confidence 88643 6899999999999876 999999999999999999999876554454 45443
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-65 Score=661.21 Aligned_cols=542 Identities=20% Similarity=0.299 Sum_probs=437.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 292 IKAMFRSVWKDVLLTALVAIVCTLATYVGPYLIDTLVQYLSGKRDFENEGYALVSAFCVAKLVECLCQRFFVFRLEQLGI 371 (1495)
Q Consensus 292 ~~al~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~g~ 371 (1495)
+...++.+++.++...++.++..++.++.|++++.++|.+..... ....+.++++++++.++..++.....+...+++.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (708)
T TIGR01193 147 FIPLITRQKKLIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKM-MGTLGIISIGLIIAYIIQQILSYIQIFLLNVLGQ 225 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566677888888888999999999999999999997754321 1222334444455556666666666777888999
Q ss_pred HHHHHHHHHHHHHHhcCCcchhcCCCHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 372 RLRAALIAMIYNKGLKLSSQAKQGNTSGEIINFMTVDAERVAELSWYI-HDPWLFLFEVALSFLILYKSLGIASVAAFFG 450 (1495)
Q Consensus 372 rir~~L~~~iy~K~L~ls~~~~~~~~~G~i~nl~s~D~~~i~~~~~~~-~~~w~~pl~i~~~~~lL~~~lG~~~l~gl~~ 450 (1495)
++...+...+|+|.++++....++.++|+++|+++ |++.+.+++... .......+.+++.+++++..-++.+++.+++
T Consensus 226 ~~~~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~ 304 (708)
T TIGR01193 226 RLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLFLLSLLS 304 (708)
T ss_pred HHHHHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 99999999999999999999999999999999998 999998865432 2233333344444444554444445555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 451 TVIFMLVNVPLSTVQEKFQNELMKSKDERMKATSEILRNMRILKLQGWELKFLSKTIDLRKSESGWLKRCLYTSSITSFV 530 (1495)
Q Consensus 451 ~i~~~~~~~~~~~~~~~~~~~~m~~~D~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~ 530 (1495)
+++.+.+...+.+..++..++.++..+++.....|.++|+++||.+++|+.+.+++++..++..+...+..........+
T Consensus 305 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (708)
T TIGR01193 305 IPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQAI 384 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666777888888999999999999999999999999999999999998887766554444333333222222211
Q ss_pred HHHH--HHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccC
Q 000452 531 FWCA--PTFVSVITFGTCILLKVPLESGKVLSAIATFRLLQILIYKLPAIISMTIQTKVSLQRIASFFCLDELQPDLVEK 608 (1495)
Q Consensus 531 ~~~~--p~~v~~~~f~~~~~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~~~~ 608 (1495)
.... -..+.++.++.+.+..+.+|.|.++++..++..+..|+..+...+..+.+++++++|+.++++.++..+.....
T Consensus 385 ~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~ 464 (708)
T TIGR01193 385 KAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKKKR 464 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccc
Confidence 1111 11234556788888899999999999999999999999999999999999999999999999876433221110
Q ss_pred CCCCCCcccEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe------
Q 000452 609 QPRGSSETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------ 682 (1495)
Q Consensus 609 ~~~~~~~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~------ 682 (1495)
.+.....+.|+++|++|+|+. ++++|+|+||+|++|+.++|+|+||||||||+++|+|+++|++|+|.+||.
T Consensus 465 ~~~~~~~~~I~~~~vsf~y~~--~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~ 542 (708)
T TIGR01193 465 TELNNLNGDIVINDVSYSYGY--GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDID 542 (708)
T ss_pred cCCCCCCCcEEEEEEEEEcCC--CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcC
Confidence 111122347999999999962 358999999999999999999999999999999999999999999999983
Q ss_pred -------EEEEccCCcccCccHHHHHhcCC--CCCHHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHH
Q 000452 683 -------KAYVAQSPWIQSGKIEDNILFGK--EMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQI 753 (1495)
Q Consensus 683 -------~ayv~Q~~~l~~~ti~enI~fg~--~~~~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 753 (1495)
++||||+|++|++||+|||.+|. ..+++++.++++.++++++++.+|+|.+|.+||+|.+||||||||++|
T Consensus 543 ~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRial 622 (708)
T TIGR01193 543 RHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIAL 622 (708)
T ss_pred HHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHH
Confidence 69999999999999999999983 478889999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEecCCCccccCCEEEEEeCCEEEEecChHHHHhcCC
Q 000452 754 ARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVINSGT 833 (1495)
Q Consensus 754 ARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 833 (1495)
|||++++|+|+|||||||+||+++++++.+.+. . .+++|+|+|||+++.+..||+|++|++|++++.|+++|+++.++
T Consensus 623 ARall~~p~iliLDE~Ts~LD~~te~~i~~~L~-~-~~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L~~~~~ 700 (708)
T TIGR01193 623 ARALLTDSKVLILDESTSNLDTITEKKIVNNLL-N-LQDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDRNG 700 (708)
T ss_pred HHHHhhCCCEEEEeCccccCCHHHHHHHHHHHH-H-hcCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHHHhcCC
Confidence 999999999999999999999999999887654 3 36899999999999999999999999999999999999998877
Q ss_pred chhHHH
Q 000452 834 DFMELV 839 (1495)
Q Consensus 834 ~~~~l~ 839 (1495)
.|.+++
T Consensus 701 ~y~~l~ 706 (708)
T TIGR01193 701 FYASLI 706 (708)
T ss_pred cHHHHh
Confidence 777664
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-65 Score=648.35 Aligned_cols=514 Identities=19% Similarity=0.166 Sum_probs=403.6
Q ss_pred HHHHHHHHHHhhHHHHHhhcccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 000452 935 AQTLFQILQIASNYWIAWATPASKDIKPRVTGSMLLIVFVALAFGSSFCILARSTLLATAGYKTATLLFNKMHYCIFRAP 1014 (1495)
Q Consensus 935 ~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~ll~ap 1014 (1495)
+.++..+..++.++.++.+.+.. . ......+..++++.++..++.++..++....+.+....++.++++++++.|
T Consensus 26 ~~~~~~~~~~~~~~~i~~~i~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~ 100 (555)
T TIGR01194 26 LGLAGGLAIIALLASINNAIHEE---N--FLGQGSLFSFGGLCLLALLFRIGADIFPAYAGMHIIANLRIALCEKILGAP 100 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC---C--cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34455556666667776554311 0 000012233445556666777888888889999999999999999999999
Q ss_pred cccccccccccchhHHhcchhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 1015 MSFFDATPSGRIINRASTDQSAVDLSIPALIGSFAFSIIRVLGVIGVMSLVAWQVFIVFIPVIATCIWYQQYYISSAREL 1094 (1495)
Q Consensus 1015 ~~ffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~ip~~~~~~~~~~~y~~~~r~l 1094 (1495)
+.||++.++|++++|+++|++.++..+. .+..++..++.+++.++++++.+|.++++++.++++.+.+..+..+..++.
T Consensus 101 ~~~~~~~~~G~l~srl~~Dv~~i~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~L~li~l~~~~~~~~~~~~~~~~~~~~ 179 (555)
T TIGR01194 101 IEEIDRRGAHNLIPLLTHDIDQINAFLF-IFPPIAIALAIFFFCIAYLAYLSVPMFAITISAIIIGTAAQLLAFMGGFKF 179 (555)
T ss_pred HHHHHhcCcchhhHHHhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998875 467777888888888899999999998877666555555555555555555
Q ss_pred HHHHHHhhhhHHHHHHHhhcchHHHHhhccHH--HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 1095 SRLVGVCKAPLIQHFAETVSGSTTIRSFDQES--RFIDTNMELMDGYSRPTFHVAAAMEWLGFRLDMLSNITFAFSLVFL 1172 (1495)
Q Consensus 1095 ~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~--~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~~~~~~~~~~~ 1172 (1495)
.+......+.+.+++.|.+.|+.+||+|+.++ ...+++.+..++..+................+++..+...+.+ .
T Consensus 180 ~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 257 (555)
T TIGR01194 180 FHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILIFIAAENFGQLLFFLLIGCAL--F 257 (555)
T ss_pred HHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Confidence 55666677889999999999999999999854 4455666666655554443322222222212222221111111 1
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCCCCCccc--c-CCC--CCCCCCcce
Q 000452 1173 ISIPKGFIDPAIAGLAVTYGLTLNNLQAMLIWLACQMENKIISVERIFQYTCIPSEPPLEIE--E-SRP--NHSWPSHGK 1247 (1495)
Q Consensus 1173 ~~~~~~~~~~~~~gl~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~E~~~~~~--~-~~~--~~~wp~~g~ 1247 (1495)
+....+.++.|.+...+.|...+..++..+...+.+++....|.+|+.++.+.+.+++...+ + ... .+.....+.
T Consensus 258 ~~~~~~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (555)
T TIGR01194 258 AAAMFASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDS 337 (555)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccCCCCce
Confidence 11123678888888888888888999999999999999999999999999764322211100 0 000 011123468
Q ss_pred EEEeeeeEEeCCC---CCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcc
Q 000452 1248 IDLRDLQVRYAPH---MPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTR 1324 (1495)
Q Consensus 1248 I~f~nv~~~Y~~~---~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~ 1324 (1495)
|+|+||+|+|++. .+++|+|+||+|++||++||||+||||||||+++|.|+++|++|+|.+||+|+++++.+++|++
T Consensus 338 i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~ 417 (555)
T TIGR01194 338 IELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDL 417 (555)
T ss_pred EEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhh
Confidence 9999999999753 2469999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEcccCcCCCCcHHHhcCCCCCCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCC
Q 000452 1325 LSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRK 1404 (1495)
Q Consensus 1325 isiIpQdp~LF~GTIR~NLdp~~~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALLr~~~ 1404 (1495)
++++||||++|++|+|+|+. .+.+|+++++++++++++++++.+|+|+||. .+||||||||++||||++++|+
T Consensus 418 i~~v~q~~~lf~~ti~~n~~--~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~-----~~LSgGq~qRlalaRall~~~~ 490 (555)
T TIGR01194 418 FSAIFADFHLFDDLIGPDEG--EHASLDNAQQYLQRLEIADKVKIEDGGFSTT-----TALSTGQQKRLALICAWLEDRP 490 (555)
T ss_pred CcEEccChhhhhhhhhcccc--cchhHHHHHHHHHHcCCchhhcccccccCCc-----ccCCHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999974 3678999999999999999999999999994 7899999999999999999999
Q ss_pred eEEEEcCCCCCCHHHHHHHHHHHHH-h-cCCcEEEEEecCchhhhccCEEEEEeCcEEEEe
Q 000452 1405 ILMLDEATASVDTATDNLIQQSLRQ-H-FSDCTVITIAHRITSVIDSDMVLLLSHGLIEEY 1463 (1495)
Q Consensus 1405 ILiLDEaTsslD~~Td~~Iq~~Ir~-~-f~~~TVI~IAHRl~ti~~~DrIlVL~~G~ivE~ 1463 (1495)
|||||||||+||++|++.|++.+.+ . .+++|+|+||||++++..||+|+||++|+++|.
T Consensus 491 ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 491 ILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVKD 551 (555)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999887643 3 368999999999999999999999999999985
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-64 Score=645.02 Aligned_cols=545 Identities=18% Similarity=0.211 Sum_probs=438.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 292 IKAMFRSVWKDVLLTALVAIVCTLATYVGPYLIDTLVQYLSGKRDFENEGYALVSAFCVAKLVECLCQRFFVFRLEQLGI 371 (1495)
Q Consensus 292 ~~al~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~g~ 371 (1495)
++.+++.+++.++..++..++..++..+.|++++.+++.+.+... ......++.++++..++..++.....+...+++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 94 (582)
T PRK11176 16 LWPTIAPFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKAD-RSVLKWMPLVVIGLMILRGITSFISSYCISWVSG 94 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677777777777888888888899999999987764321 1111222223333444555555555566778888
Q ss_pred HHHHHHHHHHHHHHhcCCcchhcCCCHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 372 RLRAALIAMIYNKGLKLSSQAKQGNTSGEIINFMTVDAERVAELS-WYIHDPWLFLFEVALSFLILYKSLGIASVAAFFG 450 (1495)
Q Consensus 372 rir~~L~~~iy~K~L~ls~~~~~~~~~G~i~nl~s~D~~~i~~~~-~~~~~~w~~pl~i~~~~~lL~~~lG~~~l~gl~~ 450 (1495)
++...+...+|+|.++++.....+.+.|++++++++|++++.+.. ..+..++..++.+++.+++++..-++.+++.+++
T Consensus 95 ~~~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~ 174 (582)
T PRK11176 95 KVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSLILIVI 174 (582)
T ss_pred HHHHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998754 3455566777777777777666555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 451 TVIFMLVNVPLSTVQEKFQNELMKSKDERMKATSEILRNMRILKLQGWELKFLSKTIDLRKSESGWLKRCLYTSSITSFV 530 (1495)
Q Consensus 451 ~i~~~~~~~~~~~~~~~~~~~~m~~~D~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~ 530 (1495)
+++..++...+.+..++..++.++..++......|.++|+++||.+++|+.+.++.++.-++-.+...+..........+
T Consensus 175 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (582)
T PRK11176 175 APIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISDPI 254 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555556677777888888899999999999999999999999999999888877665444333333333322222222
Q ss_pred HHHHH--HHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccC
Q 000452 531 FWCAP--TFVSVITFGTCILLKVPLESGKVLSAIATFRLLQILIYKLPAIISMTIQTKVSLQRIASFFCLDELQPDLVEK 608 (1495)
Q Consensus 531 ~~~~p--~~v~~~~f~~~~~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~~~~ 608 (1495)
..... ..+.++.++.+....+.+++|.+.++.+++..+..|+..+...+..+.+++.+++|+.++++.++.++.....
T Consensus 255 ~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~ 334 (582)
T PRK11176 255 IQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEGKRV 334 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCcC
Confidence 11111 2233445666767778899999999999999999999999999999999999999999999866543211111
Q ss_pred CCCCCCcccEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe------
Q 000452 609 QPRGSSETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------ 682 (1495)
Q Consensus 609 ~~~~~~~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~------ 682 (1495)
.......|+++|++|+|+. .++++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.
T Consensus 335 --~~~~~~~i~~~~vsf~y~~-~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~ 411 (582)
T PRK11176 335 --IERAKGDIEFRNVTFTYPG-KEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYT 411 (582)
T ss_pred --CCCCCCeEEEEEEEEecCC-CCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcC
Confidence 1112235999999999964 3468999999999999999999999999999999999999999999999984
Q ss_pred -------EEEEccCCcccCccHHHHHhcCCC--CCHHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHH
Q 000452 683 -------KAYVAQSPWIQSGKIEDNILFGKE--MDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQI 753 (1495)
Q Consensus 683 -------~ayv~Q~~~l~~~ti~enI~fg~~--~~~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 753 (1495)
++||||+|.+|++|++|||.+|.+ +++++++++++.++++++++.+|+|.+|.+|++|.+||||||||++|
T Consensus 412 ~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~L 491 (582)
T PRK11176 412 LASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAI 491 (582)
T ss_pred HHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHH
Confidence 489999999999999999999853 78999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEecCCCccccCCEEEEEeCCEEEEecChHHHHhcCC
Q 000452 754 ARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVINSGT 833 (1495)
Q Consensus 754 ARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 833 (1495)
|||++++|+|+||||||||||+.+++.+++. +....+++|+|+|||+++.++.||+|++|++|++++.|+++++++.++
T Consensus 492 ARall~~~~ililDEptsaLD~~t~~~i~~~-l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~~~~ 570 (582)
T PRK11176 492 ARALLRDSPILILDEATSALDTESERAIQAA-LDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQNG 570 (582)
T ss_pred HHHHHhCCCEEEEECccccCCHHHHHHHHHH-HHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHHHhCCC
Confidence 9999999999999999999999999998764 455557899999999999999999999999999999999999999888
Q ss_pred chhHHHHH
Q 000452 834 DFMELVDA 841 (1495)
Q Consensus 834 ~~~~l~~~ 841 (1495)
.|.++...
T Consensus 571 ~y~~l~~~ 578 (582)
T PRK11176 571 VYAQLHKM 578 (582)
T ss_pred hHHHHHHH
Confidence 88887653
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-67 Score=661.41 Aligned_cols=449 Identities=24% Similarity=0.393 Sum_probs=348.0
Q ss_pred cEEEEeeEEEecCCC-CCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCC-----CCcEEEEcC---------
Q 000452 617 AIEIADGNFSWDISS-HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPK-----ISGTLKLCG--------- 681 (1495)
Q Consensus 617 ~i~~~~~~~~~~~~~-~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~-----~~G~v~~~g--------- 681 (1495)
.++++|++++|+..+ .+++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 589999999996321 25799999999999999999999999999999999999986 799998876
Q ss_pred --------eEEEEccCCc--cc-CccHHHHHhcCC----CCC----HHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCc
Q 000452 682 --------TKAYVAQSPW--IQ-SGKIEDNILFGK----EMD----RERYNAVLDACSLEKDLEILSFGDQTVVGERGIN 742 (1495)
Q Consensus 682 --------~~ayv~Q~~~--l~-~~ti~enI~fg~----~~~----~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~ 742 (1495)
.++|++|+|. ++ ..|+++|+.++. ..+ .++.+++++.+++.+.. ....++..+
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~--------~~~~~~~~~ 156 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAA--------KRLTDYPHQ 156 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChH--------HHHhhCCcc
Confidence 2699999985 33 358999986421 122 23445556655553211 012467889
Q ss_pred cchHHHHHHHHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHH-h-CCCEEEEEecCCCcccc-CCEEEEEeCCEE
Q 000452 743 LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL-L-NSKTVLYVTHQVEFLPA-ADLVLVIKDGKI 819 (1495)
Q Consensus 743 LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~-~~~tvIlvTH~~~~l~~-~d~i~~l~~G~i 819 (1495)
|||||||||+|||||+.+|+++||||||++||+...+.+.+ ++..+ . .++|+|+|||+++.+.. ||+|++|++|++
T Consensus 157 LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~-~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i 235 (529)
T PRK15134 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQ-LLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRC 235 (529)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHH-HHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEE
Confidence 99999999999999999999999999999999999988876 44443 3 37999999999999865 999999999999
Q ss_pred EEecChHHHHhcCCchhHHHHHHHhhhcccccccCCCCCCCCCCCCCCCCCCcccccccccccccccccccccccchhhh
Q 000452 820 TQAGKYTDVINSGTDFMELVDAHKQALSTLDSIEGRPLSEKGSANGENDGTSATDGVVKEVENKEVQNDREDKVAEPQRQ 899 (1495)
Q Consensus 820 ~~~g~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 899 (1495)
++.|+++++..... . .
T Consensus 236 ~~~g~~~~~~~~~~--------------------------------------------------------~--------~ 251 (529)
T PRK15134 236 VEQNRAATLFSAPT--------------------------------------------------------H--------P 251 (529)
T ss_pred EEeCCHHHHhhCCC--------------------------------------------------------C--------H
Confidence 98887765421000 0 0
Q ss_pred hhHHHHHhhcCchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhcccCCCCCCCcchhHHHHHHHHHHHH
Q 000452 900 LVQEEEREKGKVEFSVYWKYITAAYGGVLVPFILLAQTLFQILQIASNYWIAWATPASKDIKPRVTGSMLLIVFVALAFG 979 (1495)
Q Consensus 900 ~~~~e~~~~g~v~~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~y~~l~~~ 979 (1495)
.. + .++.
T Consensus 252 ~~----~-----------~~~~---------------------------------------------------------- 258 (529)
T PRK15134 252 YT----Q-----------KLLN---------------------------------------------------------- 258 (529)
T ss_pred HH----H-----------HHHH----------------------------------------------------------
Confidence 00 0 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccccccccccchhHHhcchhHHHhhhHHHHHHHHHHHHHHHHHH
Q 000452 980 SSFCILARSTLLATAGYKTATLLFNKMHYCIFRAPMSFFDATPSGRIINRASTDQSAVDLSIPALIGSFAFSIIRVLGVI 1059 (1495)
Q Consensus 980 ~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~ll~ap~~ffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~~~~~ 1059 (1495)
.+
T Consensus 259 ---------------------------------~~--------------------------------------------- 260 (529)
T PRK15134 259 ---------------------------------SE--------------------------------------------- 260 (529)
T ss_pred ---------------------------------hC---------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcchHHHHhhccHHHHHHHHHHHHHHh
Q 000452 1060 GVMSLVAWQVFIVFIPVIATCIWYQQYYISSARELSRLVGVCKAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGY 1139 (1495)
Q Consensus 1060 ~~~~~~~~~~~~v~ip~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~ 1139 (1495)
T Consensus 261 -------------------------------------------------------------------------------- 260 (529)
T PRK15134 261 -------------------------------------------------------------------------------- 260 (529)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 000452 1140 SRPTFHVAAAMEWLGFRLDMLSNITFAFSLVFLISIPKGFIDPAIAGLAVTYGLTLNNLQAMLIWLACQMENKIISVERI 1219 (1495)
Q Consensus 1140 ~~~~~~~~~~~~wl~~rl~~l~~~~~~~~~~~~~~~~~~~~~~~~~gl~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi 1219 (1495)
+.
T Consensus 261 ------------------------------------~~------------------------------------------ 262 (529)
T PRK15134 261 ------------------------------------PS------------------------------------------ 262 (529)
T ss_pred ------------------------------------cc------------------------------------------
Confidence 00
Q ss_pred HHHhcCCCCCCCccccCCCCCCCCCcceEEEeeeeEEeCC---------CCCcceeeeeEEeeCCcEEEEEcCCCCCHHH
Q 000452 1220 FQYTCIPSEPPLEIEESRPNHSWPSHGKIDLRDLQVRYAP---------HMPFVLRGISCTFPGEKKTGIVGRTGSGKST 1290 (1495)
Q Consensus 1220 ~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nv~~~Y~~---------~~~~vL~~Is~~I~~GekvgIVGrTGSGKST 1290 (1495)
.++..+ .++ ....|+++|++++|.. +...+|+||||+|++||++||+|+|||||||
T Consensus 263 -----~~~~~~------~~~----~~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKST 327 (529)
T PRK15134 263 -----GDPVPL------PEP----ASPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKST 327 (529)
T ss_pred -----cccccc------CCC----CCCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHH
Confidence 000000 000 0114899999999952 1246999999999999999999999999999
Q ss_pred HHHHHhccccCCccEEEEcCEeCCCCCHHH---HhcccEEEcccC--cCCCC-cHHHhcCCC---C--CCC----HHHHH
Q 000452 1291 LIQTLFRIVEPAAGQILIDGIDISLIGLHD---LRTRLSIIPQDP--VMFEG-TVRSNVDPL---E--EYT----DEQIW 1355 (1495)
Q Consensus 1291 Ll~~L~rl~ep~~G~I~IDG~dI~~i~l~~---LR~~isiIpQdp--~LF~G-TIR~NLdp~---~--~~s----d~ei~ 1355 (1495)
|+++|.|++ |++|+|.+||.++...+..+ +|++++|+||+| .+|.. |+++|+... . ..+ ++++.
T Consensus 328 Llk~l~Gl~-~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~ 406 (529)
T PRK15134 328 TGLALLRLI-NSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVI 406 (529)
T ss_pred HHHHHhCcC-CCCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHH
Confidence 999999998 48999999999998776544 478899999998 36664 999999521 1 111 34567
Q ss_pred HHHHHcCCcH-HHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcC--
Q 000452 1356 EALDKCQLGD-EVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFS-- 1432 (1495)
Q Consensus 1356 ~aL~~~~L~~-~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~-- 1432 (1495)
++++..++.+ ...+ ...+||||||||++|||||+.+|+||||||||++||+.+...+.+.|++..+
T Consensus 407 ~~l~~~~l~~~~~~~-----------~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~ 475 (529)
T PRK15134 407 AVMEEVGLDPETRHR-----------YPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKH 475 (529)
T ss_pred HHHHHcCCCHHHHhc-----------CCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhh
Confidence 7888888753 3322 2346999999999999999999999999999999999999999999998642
Q ss_pred CcEEEEEecCchhhhc-cCEEEEEeCcEEEEecChhHHhhcCC
Q 000452 1433 DCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLENKS 1474 (1495)
Q Consensus 1433 ~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~Ll~~~~ 1474 (1495)
++|||+|+|+++.+.. ||+|++|++|++++.|+++++++++.
T Consensus 476 ~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~ 518 (529)
T PRK15134 476 QLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCERVFAAPQ 518 (529)
T ss_pred CCEEEEEeCCHHHHHHhcCeEEEEECCEEEEEcCHHHHhcCCC
Confidence 7899999999999875 99999999999999999999986543
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-64 Score=641.27 Aligned_cols=544 Identities=20% Similarity=0.249 Sum_probs=448.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 292 IKAMFRSVWKDVLLTALVAIVCTLATYVGPYLIDTLVQYLSGKRDFENEGYALVSAFCVAKLVECLCQRFFVFRLEQLGI 371 (1495)
Q Consensus 292 ~~al~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~g~ 371 (1495)
+..+++.+++.+++..++.++..++....|++++.+++....... ...-+.++++++++.++..++.....+...+.+.
T Consensus 5 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 83 (571)
T TIGR02203 5 LWSYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRD-RSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVSN 83 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344667788889999999999999999999999999986543321 1222233333444555556666666677788899
Q ss_pred HHHHHHHHHHHHHHhcCCcchhcCCCHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 372 RLRAALIAMIYNKGLKLSSQAKQGNTSGEIINFMTVDAERVAELSW-YIHDPWLFLFEVALSFLILYKSLGIASVAAFFG 450 (1495)
Q Consensus 372 rir~~L~~~iy~K~L~ls~~~~~~~~~G~i~nl~s~D~~~i~~~~~-~~~~~w~~pl~i~~~~~lL~~~lG~~~l~gl~~ 450 (1495)
++...+...+|+|.++.+.....+.+.|+++|+++.|++++.+++. .+..++...+.+++++++++..-++.+++.+++
T Consensus 84 ~~~~~lr~~l~~~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~l~~ 163 (571)
T TIGR02203 84 KVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVM 163 (571)
T ss_pred HHHHHHHHHHHHHHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 9999999999999999999988999999999999999999998654 455666666677777776666555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 451 TVIFMLVNVPLSTVQEKFQNELMKSKDERMKATSEILRNMRILKLQGWELKFLSKTIDLRKSESGWLKRCLYTSSITSFV 530 (1495)
Q Consensus 451 ~i~~~~~~~~~~~~~~~~~~~~m~~~D~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~ 530 (1495)
+++.+.+...+.+..++..++..+..+++.+.++|.++|+++||.++.|+.+.++.++..++..+...+..........+
T Consensus 164 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (571)
T TIGR02203 164 LPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPI 243 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666667778888888999999999999999999999999999999999988888777666555444443333333332
Q ss_pred HHHHHH--HHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccC
Q 000452 531 FWCAPT--FVSVITFGTCILLKVPLESGKVLSAIATFRLLQILIYKLPAIISMTIQTKVSLQRIASFFCLDELQPDLVEK 608 (1495)
Q Consensus 531 ~~~~p~--~v~~~~f~~~~~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~~~~ 608 (1495)
...... .+.++.++.+.+..+.+|+|.+++++.++..+..|+..+...+..+.+++++.+|+.++++.++..+....
T Consensus 244 ~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~- 322 (571)
T TIGR02203 244 TQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGTR- 322 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC-
Confidence 222222 23345566777778899999999999999999999999999999999999999999999986654332111
Q ss_pred CCCCCCcccEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe------
Q 000452 609 QPRGSSETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------ 682 (1495)
Q Consensus 609 ~~~~~~~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~------ 682 (1495)
+.......++++|++|+|+.. ++++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.
T Consensus 323 -~~~~~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~ 400 (571)
T TIGR02203 323 -AIERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYT 400 (571)
T ss_pred -CCCCCCCeEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcC
Confidence 111123469999999999743 468999999999999999999999999999999999999999999999983
Q ss_pred -------EEEEccCCcccCccHHHHHhcCC--CCCHHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHH
Q 000452 683 -------KAYVAQSPWIQSGKIEDNILFGK--EMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQI 753 (1495)
Q Consensus 683 -------~ayv~Q~~~l~~~ti~enI~fg~--~~~~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 753 (1495)
++||||+|++|++|++|||.++. +.+++++.++++.|+++++++.+|+|.+|.+|++|.+||||||||++|
T Consensus 401 ~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaL 480 (571)
T TIGR02203 401 LASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAI 480 (571)
T ss_pred HHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHH
Confidence 69999999999999999999986 488999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEecCCCccccCCEEEEEeCCEEEEecChHHHHhcCC
Q 000452 754 ARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVINSGT 833 (1495)
Q Consensus 754 ARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 833 (1495)
|||++++|+|+|||||||+||+++++++.+. +....+++|+|+|||+.+.+..||+|++|++|++++.|+++++++.+.
T Consensus 481 ARall~~~~illLDEpts~LD~~~~~~i~~~-L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~~~~~ 559 (571)
T TIGR02203 481 ARALLKDAPILILDEATSALDNESERLVQAA-LERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLARNG 559 (571)
T ss_pred HHHHhcCCCEEEEeCccccCCHHHHHHHHHH-HHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHHHcCC
Confidence 9999999999999999999999999999765 455567899999999999999999999999999999999999998777
Q ss_pred chhHHHH
Q 000452 834 DFMELVD 840 (1495)
Q Consensus 834 ~~~~l~~ 840 (1495)
.|.++..
T Consensus 560 ~~~~~~~ 566 (571)
T TIGR02203 560 LYAQLHN 566 (571)
T ss_pred HHHHHHH
Confidence 7776654
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-67 Score=655.03 Aligned_cols=439 Identities=23% Similarity=0.358 Sum_probs=340.3
Q ss_pred cEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCC--CCcEEEEcCe------------
Q 000452 617 AIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPK--ISGTLKLCGT------------ 682 (1495)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~--~~G~v~~~g~------------ 682 (1495)
.++++|++++|+ ++++|+|+||++++|++++|+||||||||||+++|+|+++| ++|+|.++|.
T Consensus 5 ~l~~~nl~~~~~---~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (506)
T PRK13549 5 LLEMKNITKTFG---GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTER 81 (506)
T ss_pred eEEEeeeEEEeC---CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHH
Confidence 589999999995 35799999999999999999999999999999999999996 8999999872
Q ss_pred --EEEEccCCcccC-ccHHHHHhcCCCC------CHH----HHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHH
Q 000452 683 --KAYVAQSPWIQS-GKIEDNILFGKEM------DRE----RYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQ 749 (1495)
Q Consensus 683 --~ayv~Q~~~l~~-~ti~enI~fg~~~------~~~----~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkq 749 (1495)
++|++|++.++. .|++||+.++... +.+ +.+++++..++. ........+|||||||
T Consensus 82 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgGqkq 150 (506)
T PRK13549 82 AGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLD-----------INPATPVGNLGLGQQQ 150 (506)
T ss_pred CCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCC-----------CCcccchhhCCHHHHH
Confidence 699999987764 5999999987431 221 223333333321 1234677899999999
Q ss_pred HHHHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEecCCCcccc-CCEEEEEeCCEEEEecChHHH
Q 000452 750 RIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYTDV 828 (1495)
Q Consensus 750 Rv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 828 (1495)
|++||||++.+|+++||||||++||+.....+++.+.....+++|+|++||+++++.. ||++++|++|+++..|+.+++
T Consensus 151 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 230 (506)
T PRK13549 151 LVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGM 230 (506)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccC
Confidence 9999999999999999999999999999888876433333458999999999999865 999999999999876643211
Q ss_pred HhcCCchhHHHHHHHhhhcccccccCCCCCCCCCCCCCCCCCCcccccccccccccccccccccccchhhhhhHHHHHhh
Q 000452 829 INSGTDFMELVDAHKQALSTLDSIEGRPLSEKGSANGENDGTSATDGVVKEVENKEVQNDREDKVAEPQRQLVQEEEREK 908 (1495)
Q Consensus 829 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 908 (1495)
.. .+..
T Consensus 231 ~~-------------------------------------------------------------------~~~~------- 236 (506)
T PRK13549 231 TE-------------------------------------------------------------------DDII------- 236 (506)
T ss_pred CH-------------------------------------------------------------------HHHH-------
Confidence 00 0000
Q ss_pred cCchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhcccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 000452 909 GKVEFSVYWKYITAAYGGVLVPFILLAQTLFQILQIASNYWIAWATPASKDIKPRVTGSMLLIVFVALAFGSSFCILARS 988 (1495)
Q Consensus 909 g~v~~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~ 988 (1495)
... .. .
T Consensus 237 ------------~~~------------------------------~~-----~--------------------------- 242 (506)
T PRK13549 237 ------------TMM------------------------------VG-----R--------------------------- 242 (506)
T ss_pred ------------HHh------------------------------hC-----c---------------------------
Confidence 000 00 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCcccccccccccchhHHhcchhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 989 TLLATAGYKTATLLFNKMHYCIFRAPMSFFDATPSGRIINRASTDQSAVDLSIPALIGSFAFSIIRVLGVIGVMSLVAWQ 1068 (1495)
Q Consensus 989 ~~~~~~~~~~s~~l~~~ll~~ll~ap~~ffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 1068 (1495)
+.
T Consensus 243 -------------------------~~----------------------------------------------------- 244 (506)
T PRK13549 243 -------------------------EL----------------------------------------------------- 244 (506)
T ss_pred -------------------------Cc-----------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcchHHHHhhccHHHHHHHHHHHHHHhhchHHHHHH
Q 000452 1069 VFIVFIPVIATCIWYQQYYISSARELSRLVGVCKAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGYSRPTFHVAA 1148 (1495)
Q Consensus 1069 ~~~v~ip~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~ 1148 (1495)
T Consensus 245 -------------------------------------------------------------------------------- 244 (506)
T PRK13549 245 -------------------------------------------------------------------------------- 244 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCC
Q 000452 1149 AMEWLGFRLDMLSNITFAFSLVFLISIPKGFIDPAIAGLAVTYGLTLNNLQAMLIWLACQMENKIISVERIFQYTCIPSE 1228 (1495)
Q Consensus 1149 ~~~wl~~rl~~l~~~~~~~~~~~~~~~~~~~~~~~~~gl~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~E 1228 (1495)
. + . .|.+
T Consensus 245 --------------------------------~------------------------------------~---~--~~~~ 251 (506)
T PRK13549 245 --------------------------------T------------------------------------A---L--YPRE 251 (506)
T ss_pred --------------------------------c------------------------------------c---c--cccc
Confidence 0 0 0 0000
Q ss_pred CCCccccCCCCCCCCCcceEEEeeeeEEeCC-CCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccc-CCccEE
Q 000452 1229 PPLEIEESRPNHSWPSHGKIDLRDLQVRYAP-HMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVE-PAAGQI 1306 (1495)
Q Consensus 1229 ~~~~~~~~~~~~~wp~~g~I~f~nv~~~Y~~-~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~e-p~~G~I 1306 (1495)
++ + +....|+++|++++|+. +..++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|
T Consensus 252 ~~-------~----~~~~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i 320 (506)
T PRK13549 252 PH-------T----IGEVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEI 320 (506)
T ss_pred cc-------C----CCCceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEE
Confidence 00 0 11125999999999953 22359999999999999999999999999999999999998 599999
Q ss_pred EEcCEeCCCCCH-HHHhcccEEEcccC---cCCC-CcHHHhcCCC--CC------CC----HHHHHHHHHHcCCc-HHHH
Q 000452 1307 LIDGIDISLIGL-HDLRTRLSIIPQDP---VMFE-GTVRSNVDPL--EE------YT----DEQIWEALDKCQLG-DEVR 1368 (1495)
Q Consensus 1307 ~IDG~dI~~i~l-~~LR~~isiIpQdp---~LF~-GTIR~NLdp~--~~------~s----d~ei~~aL~~~~L~-~~v~ 1368 (1495)
.+||.|+...+. +..|.+++|+||+| .+|. -|+.+|+... .. .+ .+++.++++++++. +.
T Consensus 321 ~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-- 398 (506)
T PRK13549 321 FIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTAS-- 398 (506)
T ss_pred EECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCC--
Confidence 999999875543 44678899999997 3665 5999999631 11 12 13466777777763 22
Q ss_pred hccCCcccccccCCCCCCchHHHHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhh
Q 000452 1369 KKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHF-SDCTVITIAHRITSVI 1447 (1495)
Q Consensus 1369 ~lp~gLdt~v~e~G~nLS~GQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f-~~~TVI~IAHRl~ti~ 1447 (1495)
.|.+ ...||||||||++||||++.+|+||||||||++||+.+...+.+.|++.. +++|||+|||+++.+.
T Consensus 399 -----~~~~----~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~ 469 (506)
T PRK13549 399 -----PELA----IARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVL 469 (506)
T ss_pred -----cccc----cccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 2222 34799999999999999999999999999999999999999999998753 4789999999999987
Q ss_pred c-cCEEEEEeCcEEEEecChhHHh
Q 000452 1448 D-SDMVLLLSHGLIEEYDSPRKLL 1470 (1495)
Q Consensus 1448 ~-~DrIlVL~~G~ivE~gsp~~Ll 1470 (1495)
. ||+|++|++|+++..|+++++.
T Consensus 470 ~~~d~v~~l~~G~i~~~~~~~~~~ 493 (506)
T PRK13549 470 GLSDRVLVMHEGKLKGDLINHNLT 493 (506)
T ss_pred HhCCEEEEEECCEEEEEeccccCC
Confidence 5 9999999999999999988764
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-66 Score=654.79 Aligned_cols=437 Identities=22% Similarity=0.336 Sum_probs=338.0
Q ss_pred cEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcC--------------e
Q 000452 617 AIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG--------------T 682 (1495)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g--------------~ 682 (1495)
.++++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++| .
T Consensus 5 ~l~~~~l~~~~~---~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 81 (510)
T PRK09700 5 YISMAGIGKSFG---PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLG 81 (510)
T ss_pred eEEEeeeEEEcC---CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCC
Confidence 589999999995 35799999999999999999999999999999999999999999999987 2
Q ss_pred EEEEccCCcccC-ccHHHHHhcCCC----------CCH----HHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHH
Q 000452 683 KAYVAQSPWIQS-GKIEDNILFGKE----------MDR----ERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQ 747 (1495)
Q Consensus 683 ~ayv~Q~~~l~~-~ti~enI~fg~~----------~~~----~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQ 747 (1495)
++|++|++.++. .|++||+.++.. .+. ++..++++.+++.+ .......+|||||
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LSgG~ 150 (510)
T PRK09700 82 IGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKV-----------DLDEKVANLSISH 150 (510)
T ss_pred eEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCC-----------CcccchhhCCHHH
Confidence 699999987765 599999987632 011 12233344443321 2346778999999
Q ss_pred HHHHHHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEecCCCcccc-CCEEEEEeCCEEEEecChH
Q 000452 748 KQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYT 826 (1495)
Q Consensus 748 kqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 826 (1495)
||||+|||||+.+|+++||||||++||+.+...+.+.+.....+|+|+|++||+++++.. ||++++|++|++++.|+++
T Consensus 151 ~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 230 (510)
T PRK09700 151 KQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVS 230 (510)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchh
Confidence 999999999999999999999999999999988876443333458999999999999875 9999999999998877654
Q ss_pred HHHhcCCchhHHHHHHHhhhcccccccCCCCCCCCCCCCCCCCCCcccccccccccccccccccccccchhhhhhHHHHH
Q 000452 827 DVINSGTDFMELVDAHKQALSTLDSIEGRPLSEKGSANGENDGTSATDGVVKEVENKEVQNDREDKVAEPQRQLVQEEER 906 (1495)
Q Consensus 827 ~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 906 (1495)
++... +..+
T Consensus 231 ~~~~~-------------------------------------------------------------------~~~~---- 239 (510)
T PRK09700 231 DVSND-------------------------------------------------------------------DIVR---- 239 (510)
T ss_pred hCCHH-------------------------------------------------------------------HHHH----
Confidence 32100 0000
Q ss_pred hhcCchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhcccCCCCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 000452 907 EKGKVEFSVYWKYITAAYGGVLVPFILLAQTLFQILQIASNYWIAWATPASKDIKPRVTGSMLLIVFVALAFGSSFCILA 986 (1495)
Q Consensus 907 ~~g~v~~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~ 986 (1495)
...+. . ..
T Consensus 240 ---------------~~~~~----------------------------~----~~------------------------- 247 (510)
T PRK09700 240 ---------------LMVGR----------------------------E----LQ------------------------- 247 (510)
T ss_pred ---------------HhcCC----------------------------C----cc-------------------------
Confidence 00000 0 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCcccccccccccchhHHhcchhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 987 RSTLLATAGYKTATLLFNKMHYCIFRAPMSFFDATPSGRIINRASTDQSAVDLSIPALIGSFAFSIIRVLGVIGVMSLVA 1066 (1495)
Q Consensus 987 ~~~~~~~~~~~~s~~l~~~ll~~ll~ap~~ffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 1066 (1495)
T Consensus 248 -------------------------------------------------------------------------------- 247 (510)
T PRK09700 248 -------------------------------------------------------------------------------- 247 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcchHHHHhhccHHHHHHHHHHHHHHhhchHHHH
Q 000452 1067 WQVFIVFIPVIATCIWYQQYYISSARELSRLVGVCKAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGYSRPTFHV 1146 (1495)
Q Consensus 1067 ~~~~~v~ip~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~ 1146 (1495)
T Consensus 248 -------------------------------------------------------------------------------- 247 (510)
T PRK09700 248 -------------------------------------------------------------------------------- 247 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCC
Q 000452 1147 AAAMEWLGFRLDMLSNITFAFSLVFLISIPKGFIDPAIAGLAVTYGLTLNNLQAMLIWLACQMENKIISVERIFQYTCIP 1226 (1495)
Q Consensus 1147 ~~~~~wl~~rl~~l~~~~~~~~~~~~~~~~~~~~~~~~~gl~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~ 1226 (1495)
. + +...+
T Consensus 248 ------------------------------~----------------------------------------~---~~~~~ 254 (510)
T PRK09700 248 ------------------------------N----------------------------------------R---FNAMK 254 (510)
T ss_pred ------------------------------c----------------------------------------c---ccccc
Confidence 0 0 00000
Q ss_pred CCCCCccccCCCCCCCCCcceEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEE
Q 000452 1227 SEPPLEIEESRPNHSWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQI 1306 (1495)
Q Consensus 1227 ~E~~~~~~~~~~~~~wp~~g~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I 1306 (1495)
...+ ++ +....|+++|++++|. .+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|
T Consensus 255 ~~~~-------~~---~~~~~l~~~~l~~~~~----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I 320 (510)
T PRK09700 255 ENVS-------NL---AHETVFEVRNVTSRDR----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEI 320 (510)
T ss_pred cccc-------cC---CCCcEEEEeCccccCC----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeE
Confidence 0000 00 0112599999998763 28999999999999999999999999999999999999999999
Q ss_pred EEcCEeCCCCCH-HHHhcccEEEcccC---cCCCC-cHHHhcCCCCC------------CC----HHHHHHHHHHcCCc-
Q 000452 1307 LIDGIDISLIGL-HDLRTRLSIIPQDP---VMFEG-TVRSNVDPLEE------------YT----DEQIWEALDKCQLG- 1364 (1495)
Q Consensus 1307 ~IDG~dI~~i~l-~~LR~~isiIpQdp---~LF~G-TIR~NLdp~~~------------~s----d~ei~~aL~~~~L~- 1364 (1495)
.+||.++...+. ..+|++++|+||+| .+|.+ |+++|+..... .+ .+++.+++++.++.
T Consensus 321 ~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 400 (510)
T PRK09700 321 RLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKC 400 (510)
T ss_pred EECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCC
Confidence 999999876543 45788999999984 57765 99999863211 01 12356677777663
Q ss_pred HHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCc
Q 000452 1365 DEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHF-SDCTVITIAHRI 1443 (1495)
Q Consensus 1365 ~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f-~~~TVI~IAHRl 1443 (1495)
+. .+.++ ..||||||||++|||||+++|+||||||||++||..+...+.+.|++.. .+.|||+|+|++
T Consensus 401 ~~-------~~~~~----~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~ 469 (510)
T PRK09700 401 HS-------VNQNI----TELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSEL 469 (510)
T ss_pred CC-------ccCcc----ccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 22 23333 4699999999999999999999999999999999999999999998753 478999999999
Q ss_pred hhhh-ccCEEEEEeCcEEEEecChhH
Q 000452 1444 TSVI-DSDMVLLLSHGLIEEYDSPRK 1468 (1495)
Q Consensus 1444 ~ti~-~~DrIlVL~~G~ivE~gsp~~ 1468 (1495)
+.+. .||+|++|++|++++.+++.+
T Consensus 470 ~~~~~~~d~i~~l~~G~i~~~~~~~~ 495 (510)
T PRK09700 470 PEIITVCDRIAVFCEGRLTQILTNRD 495 (510)
T ss_pred HHHHhhCCEEEEEECCEEEEEecCcc
Confidence 9876 499999999999999887733
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-66 Score=702.44 Aligned_cols=249 Identities=19% Similarity=0.257 Sum_probs=203.7
Q ss_pred HHHHHHHhhHHHHHHHHh--cCCCCCCCccccCCCCCCCCCcc--eEEEeeeeEEeC--CCCCcceeeeeEEeeCCcEEE
Q 000452 1206 ACQMENKIISVERIFQYT--CIPSEPPLEIEESRPNHSWPSHG--KIDLRDLQVRYA--PHMPFVLRGISCTFPGEKKTG 1279 (1495)
Q Consensus 1206 ~~~le~~~~sveRi~~~~--~~~~E~~~~~~~~~~~~~wp~~g--~I~f~nv~~~Y~--~~~~~vL~~Is~~I~~Gekvg 1279 (1495)
..+.|+++.++||..+|. +.+.|.+.......++. ..| .++++||+++|+ ++.+.+|+|||++|+|||++|
T Consensus 717 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~a 793 (1394)
T TIGR00956 717 GETSASNKNDIEAGEVLGSTDLTDESDDVNDEKDMEK---ESGEDIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTA 793 (1394)
T ss_pred ccccccccccccccccCCCCccccccccccccccccc---cCCCceEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEE
Confidence 356777888999998873 34444433222221221 134 479999999995 334579999999999999999
Q ss_pred EEcCCCCCHHHHHHHHhcccc---CCccEEEEcCEeCCCCCHHHHhcccEEEcccCcC-CCCcHHHhcCCC------CCC
Q 000452 1280 IVGRTGSGKSTLIQTLFRIVE---PAAGQILIDGIDISLIGLHDLRTRLSIIPQDPVM-FEGTVRSNVDPL------EEY 1349 (1495)
Q Consensus 1280 IVGrTGSGKSTLl~~L~rl~e---p~~G~I~IDG~dI~~i~l~~LR~~isiIpQdp~L-F~GTIR~NLdp~------~~~ 1349 (1495)
|+||||||||||+++|.|+.+ |++|+|.+||.++. .++|++++||||++.+ +..||||||+.. .+.
T Consensus 794 I~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~ 869 (1394)
T TIGR00956 794 LMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSV 869 (1394)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCC
Confidence 999999999999999999998 78899999999985 3578999999999764 567999999731 134
Q ss_pred CHH----HHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCC-eEEEEcCCCCCCHHHHHHHH
Q 000452 1350 TDE----QIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRK-ILMLDEATASVDTATDNLIQ 1424 (1495)
Q Consensus 1350 sd~----ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALLr~~~-ILiLDEaTsslD~~Td~~Iq 1424 (1495)
+++ .+.++++..++.+ ..|+.+++.|.+||||||||++|||||+.+|+ ||+||||||+||+.+...|+
T Consensus 870 ~~~~~~~~v~~~l~~l~L~~-------~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~ 942 (1394)
T TIGR00956 870 SKSEKMEYVEEVIKLLEMES-------YADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSIC 942 (1394)
T ss_pred CHHHHHHHHHHHHHHcCChh-------hCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHH
Confidence 443 3567788777643 46889999889999999999999999999997 99999999999999999999
Q ss_pred HHHHHh-cCCcEEEEEecCchhh--hccCEEEEEeCc-EEEEecChhH
Q 000452 1425 QSLRQH-FSDCTVITIAHRITSV--IDSDMVLLLSHG-LIEEYDSPRK 1468 (1495)
Q Consensus 1425 ~~Ir~~-f~~~TVI~IAHRl~ti--~~~DrIlVL~~G-~ivE~gsp~~ 1468 (1495)
+.|++. .+++|||+++|++++. ..||+|++|++| +++++|++.+
T Consensus 943 ~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~ 990 (1394)
T TIGR00956 943 KLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGE 990 (1394)
T ss_pred HHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCccc
Confidence 999987 4689999999999974 569999999997 9999999743
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-63 Score=634.25 Aligned_cols=543 Identities=20% Similarity=0.229 Sum_probs=426.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 292 IKAMFRSVWKDVLLTALVAIVCTLATYVGPYLIDTLVQYLSGKRDFENE-GYALVSAFCVAKLVECLCQRFFVFRLEQLG 370 (1495)
Q Consensus 292 ~~al~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~-g~~l~~~l~~~~~~~~~~~~~~~~~~~~~g 370 (1495)
+..+++.+++.++...++.++..++..+.|+++..+++.+......... ...+++++++..++..++.....+...+.+
T Consensus 14 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (592)
T PRK10790 14 LLAYGSPWRKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPLGLVAGLAAAYVGLQLLAAGLHYAQSLLFNRAA 93 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566777788888889999999999999999999976543221111 122233344444556666666677778889
Q ss_pred HHHHHHHHHHHHHHHhcCCcchhcCCCHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 371 IRLRAALIAMIYNKGLKLSSQAKQGNTSGEIINFMTVDAERVAELSWYI-HDPWLFLFEVALSFLILYKSLGIASVAAFF 449 (1495)
Q Consensus 371 ~rir~~L~~~iy~K~L~ls~~~~~~~~~G~i~nl~s~D~~~i~~~~~~~-~~~w~~pl~i~~~~~lL~~~lG~~~l~gl~ 449 (1495)
.++...+...+|+|.++++.....+.+.|+++|++++|++.+.+++... ..+....+.+++++.+++..-.+.+++.++
T Consensus 94 ~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~ 173 (592)
T PRK10790 94 VGVVQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMALVAIM 173 (592)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999899999999999999999999865543 333334343444444443332233333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 000452 450 GTVIFMLVNVPLSTVQEKFQNELMKSKDERMKATSEILRNMRILKLQGWELKFLSKTIDLRKSESGWLKRCLYTSSIT-- 527 (1495)
Q Consensus 450 ~~i~~~~~~~~~~~~~~~~~~~~m~~~D~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~-- 527 (1495)
++.+.+.+..+..+..++..++..+..++..+...|.++|+++||.|+.|+.+.+++.+..++..+...+........
T Consensus 174 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (592)
T PRK10790 174 IFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLLR 253 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444555666677777777888888899999999999999999999999888776554333322222211110
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc
Q 000452 528 --SFVFWCAPTFVSVITFGTCILLKVPLESGKVLSAIATFRLLQILIYKLPAIISMTIQTKVSLQRIASFFCLDELQPDL 605 (1495)
Q Consensus 528 --~~~~~~~p~~v~~~~f~~~~~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~ 605 (1495)
..+......++ ++..+.+ ...+.++.+.+++++.++..+..|+..++.....+.+++.+.+||.++++.++.+...
T Consensus 254 ~~~~~~~~~~~~~-~~~~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~ 331 (592)
T PRK10790 254 PLLSLFSALILCG-LLMLFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYGN 331 (592)
T ss_pred HHHHHHHHHHHHH-HHHHHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCC
Confidence 11111111111 1122223 3567799999999999999999999999999999999999999999999865432221
Q ss_pred ccCCCCCCCcccEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe---
Q 000452 606 VEKQPRGSSETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT--- 682 (1495)
Q Consensus 606 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~--- 682 (1495)
. ..+ .....|+++|++|+|+. ++++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.+||.
T Consensus 332 ~-~~~--~~~~~i~~~~v~f~y~~--~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~ 406 (592)
T PRK10790 332 D-DRP--LQSGRIDIDNVSFAYRD--DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLS 406 (592)
T ss_pred C-ccC--CCCCeEEEEEEEEEeCC--CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhh
Confidence 1 111 12246999999999973 357999999999999999999999999999999999999999999999984
Q ss_pred ----------EEEEccCCcccCccHHHHHhcCCCCCHHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHH
Q 000452 683 ----------KAYVAQSPWIQSGKIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQ 752 (1495)
Q Consensus 683 ----------~ayv~Q~~~l~~~ti~enI~fg~~~~~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~ 752 (1495)
++||||+|++|++|++|||.+|.+.++++..++++.++++++++.+|+|.+|.+|++|.+||||||||++
T Consensus 407 ~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRia 486 (592)
T PRK10790 407 SLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLA 486 (592)
T ss_pred hCCHHHHHhheEEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHH
Confidence 6999999999999999999999988999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEecCCCccccCCEEEEEeCCEEEEecChHHHHhcC
Q 000452 753 IARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVINSG 832 (1495)
Q Consensus 753 LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~ 832 (1495)
||||++++|+|+|||||||+||+++++++.+. +....+++|+|+|||+++.++.||+|++|++|++++.|+++|+++.+
T Consensus 487 lARaLl~~~~illlDEpts~LD~~t~~~i~~~-l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~~~~ 565 (592)
T PRK10790 487 LARVLVQTPQILILDEATANIDSGTEQAIQQA-LAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAAQ 565 (592)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHH-HHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 99999999999999999999999999988654 55556789999999999999999999999999999999999999988
Q ss_pred CchhHHHHHH
Q 000452 833 TDFMELVDAH 842 (1495)
Q Consensus 833 ~~~~~l~~~~ 842 (1495)
+.|.++....
T Consensus 566 ~~y~~l~~~~ 575 (592)
T PRK10790 566 GRYWQMYQLQ 575 (592)
T ss_pred CHHHHHHHHH
Confidence 8898887654
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-66 Score=652.64 Aligned_cols=437 Identities=25% Similarity=0.402 Sum_probs=341.6
Q ss_pred EEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCC--CCCCcEEEEc---------------
Q 000452 618 IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEV--PKISGTLKLC--------------- 680 (1495)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~--~~~~G~v~~~--------------- 680 (1495)
++++|++++|. ++++|+|+||++++|++++|+||||||||||+++|+|+. +|++|+|.++
T Consensus 1 l~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~ 77 (520)
T TIGR03269 1 IEVKNLTKKFD---GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSK 77 (520)
T ss_pred CEEEEEEEEEC---CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccc
Confidence 46899999995 357999999999999999999999999999999999997 7999999885
Q ss_pred --------C-----------------------eEEEEccC-CcccC-ccHHHHHhcCCC---CC----HHHHHHHHHHhC
Q 000452 681 --------G-----------------------TKAYVAQS-PWIQS-GKIEDNILFGKE---MD----RERYNAVLDACS 720 (1495)
Q Consensus 681 --------g-----------------------~~ayv~Q~-~~l~~-~ti~enI~fg~~---~~----~~~~~~vl~~~~ 720 (1495)
| .++|++|+ +.++. .|++||+.++.. .+ +++..++++.++
T Consensus 78 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g 157 (520)
T TIGR03269 78 VGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQ 157 (520)
T ss_pred cccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 1 26899997 55554 699999987531 22 234555666666
Q ss_pred cHHHHhhcCCCCcccccCCCCccchHHHHHHHHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHH-h-CCCEEEEE
Q 000452 721 LEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL-L-NSKTVLYV 798 (1495)
Q Consensus 721 l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~-~~~tvIlv 798 (1495)
+++.. .+...+|||||||||+|||||+.+|+++||||||++||+.+.+.+.+. +..+ . .|+|||+|
T Consensus 158 l~~~~-----------~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~l~~~~g~tviiv 225 (520)
T TIGR03269 158 LSHRI-----------THIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNA-LEEAVKASGISMVLT 225 (520)
T ss_pred Chhhh-----------hcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHH-HHHHHHhcCcEEEEE
Confidence 64332 356789999999999999999999999999999999999999988764 4443 3 37999999
Q ss_pred ecCCCcccc-CCEEEEEeCCEEEEecChHHHHhcCCchhHHHHHHHhhhcccccccCCCCCCCCCCCCCCCCCCcccccc
Q 000452 799 THQVEFLPA-ADLVLVIKDGKITQAGKYTDVINSGTDFMELVDAHKQALSTLDSIEGRPLSEKGSANGENDGTSATDGVV 877 (1495)
Q Consensus 799 TH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 877 (1495)
||+++++.. ||+|++|++|+++..|+++++...
T Consensus 226 tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~---------------------------------------------- 259 (520)
T TIGR03269 226 SHWPEVIEDLSDKAIWLENGEIKEEGTPDEVVAV---------------------------------------------- 259 (520)
T ss_pred eCCHHHHHHhcCEEEEEeCCEEeeecCHHHHHHH----------------------------------------------
Confidence 999999865 999999999999876654332100
Q ss_pred cccccccccccccccccchhhhhhHHHHHhhcCchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhcccC
Q 000452 878 KEVENKEVQNDREDKVAEPQRQLVQEEEREKGKVEFSVYWKYITAAYGGVLVPFILLAQTLFQILQIASNYWIAWATPAS 957 (1495)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~ 957 (1495)
|.. . +.
T Consensus 260 -----------------------------------------~~~---~---------------------------~~--- 265 (520)
T TIGR03269 260 -----------------------------------------FME---G---------------------------VS--- 265 (520)
T ss_pred -----------------------------------------HHh---h---------------------------ch---
Confidence 000 0 00
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccccccccccchhHHhcchhHH
Q 000452 958 KDIKPRVTGSMLLIVFVALAFGSSFCILARSTLLATAGYKTATLLFNKMHYCIFRAPMSFFDATPSGRIINRASTDQSAV 1037 (1495)
Q Consensus 958 ~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~ll~ap~~ffd~tp~G~ilnR~s~D~~~v 1037 (1495)
T Consensus 266 -------------------------------------------------------------------------------- 265 (520)
T TIGR03269 266 -------------------------------------------------------------------------------- 265 (520)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcchH
Q 000452 1038 DLSIPALIGSFAFSIIRVLGVIGVMSLVAWQVFIVFIPVIATCIWYQQYYISSARELSRLVGVCKAPLIQHFAETVSGST 1117 (1495)
Q Consensus 1038 d~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~ip~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~ 1117 (1495)
T Consensus 266 -------------------------------------------------------------------------------- 265 (520)
T TIGR03269 266 -------------------------------------------------------------------------------- 265 (520)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhccHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 000452 1118 TIRSFDQESRFIDTNMELMDGYSRPTFHVAAAMEWLGFRLDMLSNITFAFSLVFLISIPKGFIDPAIAGLAVTYGLTLNN 1197 (1495)
Q Consensus 1118 tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~~~~~~~~~~~~~~~~~~~~~~~~gl~l~~~~~l~~ 1197 (1495)
T Consensus 266 -------------------------------------------------------------------------------- 265 (520)
T TIGR03269 266 -------------------------------------------------------------------------------- 265 (520)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhcCCCCCCCccccCCCCCCCCCcceEEEeeeeEEeCC---CCCcceeeeeEEeeC
Q 000452 1198 LQAMLIWLACQMENKIISVERIFQYTCIPSEPPLEIEESRPNHSWPSHGKIDLRDLQVRYAP---HMPFVLRGISCTFPG 1274 (1495)
Q Consensus 1198 ~~~~~~~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nv~~~Y~~---~~~~vL~~Is~~I~~ 1274 (1495)
.++ . +... +. ....++++|++++|.. +..++|+|+||+|++
T Consensus 266 ----------~~~-------~-------~~~~--------~~----~~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~ 309 (520)
T TIGR03269 266 ----------EVE-------K-------ECEV--------EV----GEPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKE 309 (520)
T ss_pred ----------hhc-------c-------cccc--------CC----CCceEEEeccEEEeccCCCCCceEEeeEEEEEcC
Confidence 000 0 0000 00 1125999999999953 234699999999999
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEc-CE---eCCCCC---HHHHhcccEEEcccCcCCCC-cHHHhcCC-
Q 000452 1275 EKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILID-GI---DISLIG---LHDLRTRLSIIPQDPVMFEG-TVRSNVDP- 1345 (1495)
Q Consensus 1275 GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~ID-G~---dI~~i~---l~~LR~~isiIpQdp~LF~G-TIR~NLdp- 1345 (1495)
||++||+|+||||||||+++|.|+++|++|+|.++ |. ++...+ ...+|++++|+||+|.+|.. |+++|+..
T Consensus 310 Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~ 389 (520)
T TIGR03269 310 GEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEA 389 (520)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHH
Confidence 99999999999999999999999999999999996 64 344433 23567889999999988875 99999952
Q ss_pred CC-CC----CHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCeEEEEcCCCCCCHHHH
Q 000452 1346 LE-EY----TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATD 1420 (1495)
Q Consensus 1346 ~~-~~----sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALLr~~~ILiLDEaTsslD~~Td 1420 (1495)
.. .. .++++.++++.+++.+.- .++-++.+ ...||||||||++|||||+.+|+||||||||++||+.+.
T Consensus 390 ~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~----~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~ 463 (520)
T TIGR03269 390 IGLELPDELARMKAVITLKMVGFDEEK--AEEILDKY----PDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITK 463 (520)
T ss_pred HHcCCCHHHHHHHHHHHHHhCCCCCcc--chhhhhCC----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 11 11 224567788888875310 00011222 346999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcC--CcEEEEEecCchhhhc-cCEEEEEeCcEEEEecChhHHhh
Q 000452 1421 NLIQQSLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLE 1471 (1495)
Q Consensus 1421 ~~Iq~~Ir~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~Ll~ 1471 (1495)
..+.+.|++..+ +.|||+|+|+++.+.. ||+|++|++|++++.|+|+++.+
T Consensus 464 ~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 517 (520)
T TIGR03269 464 VDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEIVE 517 (520)
T ss_pred HHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999988642 7899999999999875 99999999999999999988764
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-63 Score=634.66 Aligned_cols=549 Identities=21% Similarity=0.258 Sum_probs=434.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 290 KLIKAMFRSVWKDVLLTALVAIVCTLATYVGPYLIDTLVQYLSGKRDFENEGYALVSAFCVAKLVECLCQRFFVFRLEQL 369 (1495)
Q Consensus 290 ~l~~al~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 369 (1495)
+.++.+++.+++.+.+..++.++..++.++.|++++.+++.+-...... ....+++.+++..++..+......+...++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (576)
T TIGR02204 7 AALWPFVRPYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKDSSG-LLNRYFAFLLVVALVLALGTAARFYLVTWL 85 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566777888888888999999999999999999999743222111 112222223333344455556666777889
Q ss_pred HHHHHHHHHHHHHHHHhcCCcchhcCCCHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 370 GIRLRAALIAMIYNKGLKLSSQAKQGNTSGEIINFMTVDAERVAELSW-YIHDPWLFLFEVALSFLILYKSLGIASVAAF 448 (1495)
Q Consensus 370 g~rir~~L~~~iy~K~L~ls~~~~~~~~~G~i~nl~s~D~~~i~~~~~-~~~~~w~~pl~i~~~~~lL~~~lG~~~l~gl 448 (1495)
+.++...+...+|+|.++++....++.+.|+++|++++|++.+.+++. .+..++...+.+++++++++..-.+.+++.+
T Consensus 86 ~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 165 (576)
T TIGR02204 86 GERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVL 165 (576)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 999999999999999999999888889999999999999999988753 3444455555555555555443333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 449 FGTVIFMLVNVPLSTVQEKFQNELMKSKDERMKATSEILRNMRILKLQGWELKFLSKTIDLRKSESGWLKRCLYTSSITS 528 (1495)
Q Consensus 449 ~~~i~~~~~~~~~~~~~~~~~~~~m~~~D~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~~ 528 (1495)
+.+++...+..++.+..++..++.++..+++.+...|.++|+++||.+++|+.+.+++.+..++..+...+.........
T Consensus 166 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (576)
T TIGR02204 166 LAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLT 245 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334445577777888889999999999999999999999999999999888887766654444333333222222
Q ss_pred HHHH--HHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccc
Q 000452 529 FVFW--CAPTFVSVITFGTCILLKVPLESGKVLSAIATFRLLQILIYKLPAIISMTIQTKVSLQRIASFFCLDELQPDLV 606 (1495)
Q Consensus 529 ~~~~--~~p~~v~~~~f~~~~~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~~ 606 (1495)
.+.. .....+..+.++.+.+..+.++.+.++++..++..+..|+..++..+..+.+++++++||.++++.++..+...
T Consensus 246 ~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~ 325 (576)
T TIGR02204 246 AIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPA 325 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCC
Confidence 2111 11223344456777777889999999999999999999999999999999999999999999998654321111
Q ss_pred cC-CCCCCCcccEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcC----
Q 000452 607 EK-QPRGSSETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG---- 681 (1495)
Q Consensus 607 ~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g---- 681 (1495)
.. .+.......|+++|++|+|+..+++++|+|+||++++||+++|+|+||||||||+++|+|+++|.+|+|.+||
T Consensus 326 ~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~ 405 (576)
T TIGR02204 326 HPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLR 405 (576)
T ss_pred CCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHH
Confidence 11 0111122469999999999753336899999999999999999999999999999999999999999999998
Q ss_pred ---------eEEEEccCCcccCccHHHHHhcCCC-CCHHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHH
Q 000452 682 ---------TKAYVAQSPWIQSGKIEDNILFGKE-MDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRI 751 (1495)
Q Consensus 682 ---------~~ayv~Q~~~l~~~ti~enI~fg~~-~~~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv 751 (1495)
.++|+||+|+++++|++|||.+|.+ .++++..++++.+++.++++.+|.|++|.+|++|.+||||||||+
T Consensus 406 ~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl 485 (576)
T TIGR02204 406 QLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRI 485 (576)
T ss_pred hcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHH
Confidence 3699999999999999999999875 578889999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEecCCCccccCCEEEEEeCCEEEEecChHHHHhc
Q 000452 752 QIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVINS 831 (1495)
Q Consensus 752 ~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 831 (1495)
+||||++++|+++|||||||+||+++++.+++. +....+++|+|+|||+++.++.||+|++|++|++++.|+++++.+.
T Consensus 486 ~laRal~~~~~ililDEpts~lD~~~~~~i~~~-l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~~ 564 (576)
T TIGR02204 486 AIARAILKDAPILLLDEATSALDAESEQLVQQA-LETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAK 564 (576)
T ss_pred HHHHHHHhCCCeEEEeCcccccCHHHHHHHHHH-HHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHHc
Confidence 999999999999999999999999998887654 5555678999999999999999999999999999999999999888
Q ss_pred CCchhHHHH
Q 000452 832 GTDFMELVD 840 (1495)
Q Consensus 832 ~~~~~~l~~ 840 (1495)
+..|.++..
T Consensus 565 ~~~~~~l~~ 573 (576)
T TIGR02204 565 GGLYARLAR 573 (576)
T ss_pred CChHHHHHh
Confidence 777777653
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-65 Score=643.66 Aligned_cols=447 Identities=23% Similarity=0.355 Sum_probs=344.4
Q ss_pred cEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe--------------
Q 000452 617 AIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------- 682 (1495)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~-------------- 682 (1495)
.++++|++++|+ ++++|+|+||++++|++++|+||||||||||+++|.|+++|++|+|.++|.
T Consensus 11 ~l~~~~l~~~~~---~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 87 (510)
T PRK15439 11 LLCARSISKQYS---GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG 87 (510)
T ss_pred eEEEEeEEEEeC---CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence 599999999995 357999999999999999999999999999999999999999999999872
Q ss_pred EEEEccCCcccC-ccHHHHHhcCCCCC---HHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHHHHHhc
Q 000452 683 KAYVAQSPWIQS-GKIEDNILFGKEMD---RERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALY 758 (1495)
Q Consensus 683 ~ayv~Q~~~l~~-~ti~enI~fg~~~~---~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~ 758 (1495)
++|++|++.++. .|++||+.++.... +++.+++++.+++... ...+..+|||||||||+|||||+
T Consensus 88 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~la~aL~ 156 (510)
T PRK15439 88 IYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLD-----------LDSSAGSLEVADRQIVEILRGLM 156 (510)
T ss_pred EEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCcc-----------ccCChhhCCHHHHHHHHHHHHHH
Confidence 689999987765 59999999875322 2344555555555321 24667899999999999999999
Q ss_pred cCCCEeEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEecCCCcccc-CCEEEEEeCCEEEEecChHHHHhcCCchhH
Q 000452 759 QDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYTDVINSGTDFME 837 (1495)
Q Consensus 759 ~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 837 (1495)
.+|+++||||||++||+...+.+.+.+.....+|+|+|++||+++++.. ||+|++|++|++++.|+++++... +
T Consensus 157 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~-----~ 231 (510)
T PRK15439 157 RDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLSTD-----D 231 (510)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCHH-----H
Confidence 9999999999999999999988876443333458999999999999865 999999999999988877654211 0
Q ss_pred HHHHHHhhhcccccccCCCCCCCCCCCCCCCCCCcccccccccccccccccccccccchhhhhhHHHHHhhcCchHHHHH
Q 000452 838 LVDAHKQALSTLDSIEGRPLSEKGSANGENDGTSATDGVVKEVENKEVQNDREDKVAEPQRQLVQEEEREKGKVEFSVYW 917 (1495)
Q Consensus 838 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~ 917 (1495)
....
T Consensus 232 ~~~~---------------------------------------------------------------------------- 235 (510)
T PRK15439 232 IIQA---------------------------------------------------------------------------- 235 (510)
T ss_pred HHHH----------------------------------------------------------------------------
Confidence 0000
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhcccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 918 KYITAAYGGVLVPFILLAQTLFQILQIASNYWIAWATPASKDIKPRVTGSMLLIVFVALAFGSSFCILARSTLLATAGYK 997 (1495)
Q Consensus 918 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~ 997 (1495)
+..... ... ..+.
T Consensus 236 -~~~~~~----------------------------~~~----~~~~---------------------------------- 248 (510)
T PRK15439 236 -ITPAAR----------------------------EKS----LSAS---------------------------------- 248 (510)
T ss_pred -HhCccc----------------------------ccc----cccc----------------------------------
Confidence 000000 000 0000
Q ss_pred HHHHHHHHHHHHHccCCcccccccccccchhHHhcchhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 998 TATLLFNKMHYCIFRAPMSFFDATPSGRIINRASTDQSAVDLSIPALIGSFAFSIIRVLGVIGVMSLVAWQVFIVFIPVI 1077 (1495)
Q Consensus 998 ~s~~l~~~ll~~ll~ap~~ffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~ip~~ 1077 (1495)
T Consensus 249 -------------------------------------------------------------------------------- 248 (510)
T PRK15439 249 -------------------------------------------------------------------------------- 248 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcchHHHHhhccHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 000452 1078 ATCIWYQQYYISSARELSRLVGVCKAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGYSRPTFHVAAAMEWLGFRL 1157 (1495)
Q Consensus 1078 ~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl 1157 (1495)
T Consensus 249 -------------------------------------------------------------------------------- 248 (510)
T PRK15439 249 -------------------------------------------------------------------------------- 248 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCCCCCccccCC
Q 000452 1158 DMLSNITFAFSLVFLISIPKGFIDPAIAGLAVTYGLTLNNLQAMLIWLACQMENKIISVERIFQYTCIPSEPPLEIEESR 1237 (1495)
Q Consensus 1158 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~gl~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~ 1237 (1495)
.+. . ...|...+ .
T Consensus 249 -----------------------------------------------------------~~~-~-~~~~~~~~------~ 261 (510)
T PRK15439 249 -----------------------------------------------------------QKL-W-LELPGNRR------Q 261 (510)
T ss_pred -----------------------------------------------------------ccc-c-cccccccc------c
Confidence 000 0 00000000 0
Q ss_pred CCCCCCCcceEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCC
Q 000452 1238 PNHSWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIG 1317 (1495)
Q Consensus 1238 ~~~~wp~~g~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~ 1317 (1495)
++ +..-.|+++|++. .+|+|+||+|++||++||+|+||||||||+++|.|+.+|++|+|.+||.++...+
T Consensus 262 ~~---~~~~~l~~~~l~~-------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~ 331 (510)
T PRK15439 262 QA---AGAPVLTVEDLTG-------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALS 331 (510)
T ss_pred cC---CCCceEEEeCCCC-------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCC
Confidence 00 0112589999983 1699999999999999999999999999999999999999999999999998877
Q ss_pred HHH-HhcccEEEcccC---cCCCC-cHHHhcCCC-----C---CC--CHHHHHHHHHHcCCcHHHHhccCCcccccccCC
Q 000452 1318 LHD-LRTRLSIIPQDP---VMFEG-TVRSNVDPL-----E---EY--TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENG 1382 (1495)
Q Consensus 1318 l~~-LR~~isiIpQdp---~LF~G-TIR~NLdp~-----~---~~--sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G 1382 (1495)
... .|.+++|+||+| .+|.. |+++|+... . .. .++++.++++..++.. ...+.+ .
T Consensus 332 ~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~----~ 401 (510)
T PRK15439 332 TAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKF------NHAEQA----A 401 (510)
T ss_pred HHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCC------CCccCc----c
Confidence 654 467899999996 36655 999998421 1 00 1223556677766531 123333 3
Q ss_pred CCCCchHHHHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-cCEEEEEeCcEE
Q 000452 1383 ENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGLI 1460 (1495)
Q Consensus 1383 ~nLS~GQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~i 1460 (1495)
..||||||||++|||||+.+|+||||||||++||+.+...+.+.|++.. .++|||+|+|+++.+.+ ||+|++|++|++
T Consensus 402 ~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i 481 (510)
T PRK15439 402 RTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEI 481 (510)
T ss_pred ccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEE
Confidence 4699999999999999999999999999999999999999999998864 47999999999999976 999999999999
Q ss_pred EEecChhHHhhc
Q 000452 1461 EEYDSPRKLLEN 1472 (1495)
Q Consensus 1461 vE~gsp~~Ll~~ 1472 (1495)
+..|+++++.++
T Consensus 482 ~~~~~~~~~~~~ 493 (510)
T PRK15439 482 SGALTGAAINVD 493 (510)
T ss_pred EEEEccccCCHH
Confidence 999999887643
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-66 Score=646.15 Aligned_cols=433 Identities=20% Similarity=0.315 Sum_probs=336.5
Q ss_pred cEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe--------------
Q 000452 617 AIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------- 682 (1495)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~-------------- 682 (1495)
.++++|++++|+ ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 4 ~i~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (501)
T PRK10762 4 LLQLKGIDKAFP---GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAG 80 (501)
T ss_pred eEEEeeeEEEeC---CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 589999999995 357999999999999999999999999999999999999999999999872
Q ss_pred EEEEccCCcccC-ccHHHHHhcCCC-------CCHH----HHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHH
Q 000452 683 KAYVAQSPWIQS-GKIEDNILFGKE-------MDRE----RYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQR 750 (1495)
Q Consensus 683 ~ayv~Q~~~l~~-~ti~enI~fg~~-------~~~~----~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqR 750 (1495)
++|++|++.++. .|++||+.++.. ++.. +..++++.+++. + .......+||||||||
T Consensus 81 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~---------~--~~~~~~~~LSgG~~qr 149 (501)
T PRK10762 81 IGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLR---------F--SSDKLVGELSIGEQQM 149 (501)
T ss_pred EEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCC---------C--CccCchhhCCHHHHHH
Confidence 689999987664 599999998643 1221 223334433332 1 1246678999999999
Q ss_pred HHHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEecCCCcccc-CCEEEEEeCCEEEEecChHHHH
Q 000452 751 IQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYTDVI 829 (1495)
Q Consensus 751 v~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~ 829 (1495)
++|||||+.+|+++||||||++||+.+...+.+.+.....+++|+|++||+++++.. ||+|++|++|+++..|+.+++.
T Consensus 150 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (501)
T PRK10762 150 VEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLT 229 (501)
T ss_pred HHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCC
Confidence 999999999999999999999999999888875433323357899999999999865 9999999999998765432110
Q ss_pred hcCCchhHHHHHHHhhhcccccccCCCCCCCCCCCCCCCCCCcccccccccccccccccccccccchhhhhhHHHHHhhc
Q 000452 830 NSGTDFMELVDAHKQALSTLDSIEGRPLSEKGSANGENDGTSATDGVVKEVENKEVQNDREDKVAEPQRQLVQEEEREKG 909 (1495)
Q Consensus 830 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g 909 (1495)
. ++..
T Consensus 230 ~------------------------------------------------------------------------~~~~--- 234 (501)
T PRK10762 230 E------------------------------------------------------------------------DSLI--- 234 (501)
T ss_pred H------------------------------------------------------------------------HHHH---
Confidence 0 0000
Q ss_pred CchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhcccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 000452 910 KVEFSVYWKYITAAYGGVLVPFILLAQTLFQILQIASNYWIAWATPASKDIKPRVTGSMLLIVFVALAFGSSFCILARST 989 (1495)
Q Consensus 910 ~v~~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~~ 989 (1495)
... +.. .
T Consensus 235 -----------~~~-----------------------------~~~-----~---------------------------- 241 (501)
T PRK10762 235 -----------EMM-----------------------------VGR-----K---------------------------- 241 (501)
T ss_pred -----------HHh-----------------------------cCC-----C----------------------------
Confidence 000 000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHccCCcccccccccccchhHHhcchhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 990 LLATAGYKTATLLFNKMHYCIFRAPMSFFDATPSGRIINRASTDQSAVDLSIPALIGSFAFSIIRVLGVIGVMSLVAWQV 1069 (1495)
Q Consensus 990 ~~~~~~~~~s~~l~~~ll~~ll~ap~~ffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 1069 (1495)
T Consensus 242 -------------------------------------------------------------------------------- 241 (501)
T PRK10762 242 -------------------------------------------------------------------------------- 241 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcchHHHHhhccHHHHHHHHHHHHHHhhchHHHHHHH
Q 000452 1070 FIVFIPVIATCIWYQQYYISSARELSRLVGVCKAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGYSRPTFHVAAA 1149 (1495)
Q Consensus 1070 ~~v~ip~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~ 1149 (1495)
T Consensus 242 -------------------------------------------------------------------------------- 241 (501)
T PRK10762 242 -------------------------------------------------------------------------------- 241 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCCC
Q 000452 1150 MEWLGFRLDMLSNITFAFSLVFLISIPKGFIDPAIAGLAVTYGLTLNNLQAMLIWLACQMENKIISVERIFQYTCIPSEP 1229 (1495)
Q Consensus 1150 ~~wl~~rl~~l~~~~~~~~~~~~~~~~~~~~~~~~~gl~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~E~ 1229 (1495)
. + ..++..
T Consensus 242 ------------------------------~------------------------------------~------~~~~~~ 249 (501)
T PRK10762 242 ------------------------------L------------------------------------E------DQYPRL 249 (501)
T ss_pred ------------------------------c------------------------------------c------cccccc
Confidence 0 0 000000
Q ss_pred CCccccCCCCCCCCCcceEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEc
Q 000452 1230 PLEIEESRPNHSWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILID 1309 (1495)
Q Consensus 1230 ~~~~~~~~~~~~wp~~g~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~ID 1309 (1495)
+ ++ |..-.|+++|++. .+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+|
T Consensus 250 ~-------~~---~~~~~l~~~~l~~-------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~ 312 (501)
T PRK10762 250 D-------KA---PGEVRLKVDNLSG-------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLD 312 (501)
T ss_pred c-------cC---CCCcEEEEeCccc-------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEEC
Confidence 0 00 0112589999984 27999999999999999999999999999999999999999999999
Q ss_pred CEeCCCCCH-HHHhcccEEEcccC---cCCC-CcHHHhcCCCC-----C----CC----HHHHHHHHHHcCCcHHHHhcc
Q 000452 1310 GIDISLIGL-HDLRTRLSIIPQDP---VMFE-GTVRSNVDPLE-----E----YT----DEQIWEALDKCQLGDEVRKKE 1371 (1495)
Q Consensus 1310 G~dI~~i~l-~~LR~~isiIpQdp---~LF~-GTIR~NLdp~~-----~----~s----d~ei~~aL~~~~L~~~v~~lp 1371 (1495)
|.++...+. +.+|++++|+||+| .+|. -|+++|+.... . .+ ++++.++++++++.+
T Consensus 313 g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------ 386 (501)
T PRK10762 313 GHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKT------ 386 (501)
T ss_pred CEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCC------
Confidence 999987664 34678899999997 3554 59999996310 0 11 234667777776631
Q ss_pred CCcccccccCCCCCCchHHHHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-c
Q 000452 1372 GKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHF-SDCTVITIAHRITSVID-S 1449 (1495)
Q Consensus 1372 ~gLdt~v~e~G~nLS~GQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f-~~~TVI~IAHRl~ti~~-~ 1449 (1495)
...|. ....||||||||++|||||+.+|+||||||||++||+.+...+.+.|++.. +++|||+|+|+++.+.. |
T Consensus 387 ~~~~~----~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~ 462 (501)
T PRK10762 387 PSMEQ----AIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMS 462 (501)
T ss_pred CCccC----chhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhC
Confidence 11222 334699999999999999999999999999999999999999999999864 47899999999998865 9
Q ss_pred CEEEEEeCcEEEEecChhHHh
Q 000452 1450 DMVLLLSHGLIEEYDSPRKLL 1470 (1495)
Q Consensus 1450 DrIlVL~~G~ivE~gsp~~Ll 1470 (1495)
|+|++|++|++++.|+++++.
T Consensus 463 d~v~~l~~G~i~~~~~~~~~~ 483 (501)
T PRK10762 463 DRILVMHEGRISGEFTREQAT 483 (501)
T ss_pred CEEEEEECCEEEEEeccccCC
Confidence 999999999999999988764
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-63 Score=687.71 Aligned_cols=531 Identities=17% Similarity=0.201 Sum_probs=399.5
Q ss_pred HHHHHHHHHHhhHHHHHhhcccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 000452 935 AQTLFQILQIASNYWIAWATPASKDIKPRVTGSMLLIVFVALAFGSSFCILARSTLLATAGYKTATLLFNKMHYCIFRAP 1014 (1495)
Q Consensus 935 ~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~ll~ap 1014 (1495)
..++..+++++.++.+....+...+..+......+..++++..++..++...........+.+....+...+++++++.|
T Consensus 309 ~~i~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~l~~~i~~k~l~l~ 388 (1495)
T PLN03232 309 FKIGHDLSQFVGPVILSHLLQSMQEGDPAWVGYVYAFLIFFGVTFGVLCESQYFQNVGRVGFRLRSTLVAAIFHKSLRLT 388 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34667777778888777554322111111111111111111111222221112222356777888888889999999999
Q ss_pred cccccccccccchhHHhcchhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 1015 MSFFDATPSGRIINRASTDQSAVDLSIPALIGSFAFSIIRVLGVIGVMSLVAWQVFIVFIPVIATCIWYQQYYISSAREL 1094 (1495)
Q Consensus 1015 ~~ffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~ip~~~~~~~~~~~y~~~~r~l 1094 (1495)
..+++...+|+++||+++|++.++... ..+..+....+.++..++++...-....++.++++++++.+..++.+..+..
T Consensus 389 ~~~~~~~~~G~i~n~ls~Dv~~i~~~~-~~l~~l~~~p~~ii~~~~~l~~~lg~~~l~~~~v~~l~~pl~~~~~~~~~~~ 467 (1495)
T PLN03232 389 HEARKNFASGKVTNMITTDANALQQIA-EQLHGLWSAPFRIIVSMVLLYQQLGVASLFGSLILFLLIPLQTLIVRKMRKL 467 (1495)
T ss_pred hhhcCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999875 3444454444444444333322111111112222223333444555666666
Q ss_pred HHHHHHhhhhHHHHHHHhhcchHHHHhhccHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 1095 SRLVGVCKAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGYSRPTFHVAAAMEWLGFRLDMLSNITFAFSLVFLIS 1174 (1495)
Q Consensus 1095 ~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~~~~~~~~~~~~~ 1174 (1495)
++.....++...+.++|.++|+++||+|++|+.|.+++.+..+...+..........+..........++ .++.+....
T Consensus 468 ~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~fg~~~ 546 (1495)
T PLN03232 468 TKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNSIPVVV-TLVSFGVFV 546 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 7777778888999999999999999999999999999988777666555444333333322221111111 111111222
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCCCCCccccCCCCCCCCCcceEEEeeee
Q 000452 1175 IPKGFIDPAIAGLAVTYGLTLNNLQAMLIWLACQMENKIISVERIFQYTCIPSEPPLEIEESRPNHSWPSHGKIDLRDLQ 1254 (1495)
Q Consensus 1175 ~~~~~~~~~~~gl~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nv~ 1254 (1495)
...+.++++.+-.++++...+...+..+...+..+.+..+|.+|+.++++.+++.+.. .++ ..+..+.|+|+|++
T Consensus 547 v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~----~~~-~~~~~~~I~~~~vs 621 (1495)
T PLN03232 547 LLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQ----NPP-LQPGAPAISIKNGY 621 (1495)
T ss_pred HhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccc----cCC-cCCCCCcEEEEeeE
Confidence 3367789999888888888888888899999999999999999999999766542211 111 11234579999999
Q ss_pred EEeCCC-CCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccEEEcccCc
Q 000452 1255 VRYAPH-MPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSIIPQDPV 1333 (1495)
Q Consensus 1255 ~~Y~~~-~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~isiIpQdp~ 1333 (1495)
|+|+++ .+++|+|+||+|++||+++|||+||||||||+++|+|+++|++|.+. .+|++|+||||+|+
T Consensus 622 F~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~------------~~~~~Iayv~Q~p~ 689 (1495)
T PLN03232 622 FSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV------------VIRGSVAYVPQVSW 689 (1495)
T ss_pred EEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE------------EecCcEEEEcCccc
Confidence 999753 35799999999999999999999999999999999999999999763 46889999999999
Q ss_pred CCCCcHHHhcCCCCCCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCeEEEEcCCC
Q 000452 1334 MFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATA 1413 (1495)
Q Consensus 1334 LF~GTIR~NLdp~~~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALLr~~~ILiLDEaTs 1413 (1495)
||+|||||||....+++++++++|++.|++.++++.+|+|+||.|||+|.|||||||||++||||++++|+|+|||||||
T Consensus 690 Lf~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptS 769 (1495)
T PLN03232 690 IFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLS 769 (1495)
T ss_pred cccccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 99999999999888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHH-HHHHHHhcCCcEEEEEecCchhhhccCEEEEEeCcEEEEecChhHHhhcCCChHHHHHHHHh
Q 000452 1414 SVDTATDNLI-QQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSFSQLVAEYT 1485 (1495)
Q Consensus 1414 slD~~Td~~I-q~~Ir~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~ivE~gsp~~Ll~~~~s~f~~lv~~~~ 1485 (1495)
+||++|++.| ++.++...+++|+|+||||++++..||+|++|++|+|+|.|+|++|+++ ++.|++++++..
T Consensus 770 aLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~~-~~~~~~l~~~~~ 841 (1495)
T PLN03232 770 ALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKS-GSLFKKLMENAG 841 (1495)
T ss_pred ccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHHHhc-chhHHHHHHhcc
Confidence 9999999976 5667777789999999999999999999999999999999999999974 688999987654
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-63 Score=685.10 Aligned_cols=473 Identities=18% Similarity=0.224 Sum_probs=380.9
Q ss_pred HHHHHHHHHHHHHHHHHHHccCCcccccccccccchhHHhcchhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 992 ATAGYKTATLLFNKMHYCIFRAPMSFFDATPSGRIINRASTDQSAVDLSIPALIGSFAFSIIRVLGVIGVMSLVAWQVFI 1071 (1495)
Q Consensus 992 ~~~~~~~s~~l~~~ll~~ll~ap~~ffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 1071 (1495)
...+.+....+...+++++++.|..+++..++|+++|++++|++.++... ..+..++...+.++..++++.....+..+
T Consensus 366 ~~~~~~ir~~L~~~i~~k~L~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~-~~l~~l~~~pl~ii~~~~lL~~~lg~~~l 444 (1622)
T PLN03130 366 MRVGFRLRSTLVAAVFRKSLRLTHEGRKKFTSGKITNLMTTDAEALQQIC-QQLHTLWSAPFRIIIAMVLLYQQLGVASL 444 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888888889999999999999999999999999999999999876 34555555555555544444332222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcchHHHHhhccHHHHHHHHHHHHHHhhchHHHHHHHHH
Q 000452 1072 VFIPVIATCIWYQQYYISSARELSRLVGVCKAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGYSRPTFHVAAAME 1151 (1495)
Q Consensus 1072 v~ip~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~ 1151 (1495)
+.++++++++.++.++.+..+..++.....+....+.++|.++|+++||+|++|+.|.+++.+..+...+..........
T Consensus 445 ~g~~v~~l~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~ 524 (1622)
T PLN03130 445 IGSLMLVLMFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSA 524 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333344444555566666677777777888999999999999999999999999999998877765544333332222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCCCCC
Q 000452 1152 WLGFRLDMLSNITFAFSLVFLISIPKGFIDPAIAGLAVTYGLTLNNLQAMLIWLACQMENKIISVERIFQYTCIPSEPPL 1231 (1495)
Q Consensus 1152 wl~~rl~~l~~~~~~~~~~~~~~~~~~~~~~~~~gl~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~E~~~ 1231 (1495)
+..+.......+ +.++.+.......+.++++.+-.++++...+...+..+...+..+....+|.+|+.+|++.+++.+.
T Consensus 525 ~~~~~~~~~~~~-v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~ 603 (1622)
T PLN03130 525 FNSFILNSIPVL-VTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLL 603 (1622)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccc
Confidence 222221111111 1111111222346789999988888888888888888999999999999999999999976543211
Q ss_pred ccccCCCCCCCCCcceEEEeeeeEEeCCC-CCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCc-cEEEEc
Q 000452 1232 EIEESRPNHSWPSHGKIDLRDLQVRYAPH-MPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAA-GQILID 1309 (1495)
Q Consensus 1232 ~~~~~~~~~~wp~~g~I~f~nv~~~Y~~~-~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~-G~I~ID 1309 (1495)
. . ++ .-+..+.|+|+|++|+|+++ .+++|+|+||+|++||+++|||+||||||||+++|+|+++|.+ |+|.
T Consensus 604 ~---~-~~-~~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~-- 676 (1622)
T PLN03130 604 P---N-PP-LEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVV-- 676 (1622)
T ss_pred c---C-Cc-ccCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEE--
Confidence 0 0 11 11224579999999999753 3569999999999999999999999999999999999999999 9997
Q ss_pred CEeCCCCCHHHHhcccEEEcccCcCCCCcHHHhcCCCCCCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchH
Q 000452 1310 GIDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQ 1389 (1495)
Q Consensus 1310 G~dI~~i~l~~LR~~isiIpQdp~LF~GTIR~NLdp~~~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQ 1389 (1495)
+|++|+||||+|+||+|||||||....+++++++++|++.|+|.++++.+|+|+||.|||+|.||||||
T Consensus 677 -----------l~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQ 745 (1622)
T PLN03130 677 -----------IRGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQ 745 (1622)
T ss_pred -----------EcCeEEEEcCccccCCCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHH
Confidence 467899999999999999999999888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHH-HHHHHHhcCCcEEEEEecCchhhhccCEEEEEeCcEEEEecChhH
Q 000452 1390 RQLVCLGRVLLKRRKILMLDEATASVDTATDNLI-QQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRK 1468 (1495)
Q Consensus 1390 rQrl~LARALLr~~~ILiLDEaTsslD~~Td~~I-q~~Ir~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~ivE~gsp~~ 1468 (1495)
||||+||||++++|+|+|||||||+||+++++.| +++++...+++|+|+||||++.+..||+|++|++|+|+|.|+|++
T Consensus 746 KQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~e 825 (1622)
T PLN03130 746 KQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEE 825 (1622)
T ss_pred HHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHH
Confidence 9999999999999999999999999999999866 678887788999999999999999999999999999999999999
Q ss_pred HhhcCCChHHHHHHHHh
Q 000452 1469 LLENKSSSFSQLVAEYT 1485 (1495)
Q Consensus 1469 Ll~~~~s~f~~lv~~~~ 1485 (1495)
|+++ ++.|++++++..
T Consensus 826 L~~~-~~~~~~l~~~~~ 841 (1622)
T PLN03130 826 LSNN-GPLFQKLMENAG 841 (1622)
T ss_pred HHhc-chhHHHHHHhcc
Confidence 9964 688999987654
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-65 Score=640.81 Aligned_cols=201 Identities=16% Similarity=0.311 Sum_probs=174.1
Q ss_pred ceEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhccc
Q 000452 1246 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRL 1325 (1495)
Q Consensus 1246 g~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i 1325 (1495)
..|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++| +.++
T Consensus 318 ~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i 384 (530)
T PRK15064 318 NALEVENLTKGFDN--GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSE-----------NANI 384 (530)
T ss_pred ceEEEEeeEEeeCC--ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-----------ceEE
Confidence 36999999999964 3599999999999999999999999999999999999999999999998 3579
Q ss_pred EEEcccCc--CCC-CcHHHhcCCCC--CCCHHHHHHHHHHcCCc-HHHHhccCCcccccccCCCCCCchHHHHHHHHHHH
Q 000452 1326 SIIPQDPV--MFE-GTVRSNVDPLE--EYTDEQIWEALDKCQLG-DEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVL 1399 (1495)
Q Consensus 1326 siIpQdp~--LF~-GTIR~NLdp~~--~~sd~ei~~aL~~~~L~-~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAL 1399 (1495)
+|+||+|. ++. .|+++|+..+. ...++++.++|+..++. +.... ...+||||||||++||||+
T Consensus 385 ~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~~LSgGq~qrv~la~al 453 (530)
T PRK15064 385 GYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKK-----------SVKVLSGGEKGRMLFGKLM 453 (530)
T ss_pred EEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcC-----------cccccCHHHHHHHHHHHHH
Confidence 99999984 443 59999986322 23456788899998874 33222 2357999999999999999
Q ss_pred ccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-cCEEEEEeCcEEE-EecChhHHhhc
Q 000452 1400 LKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGLIE-EYDSPRKLLEN 1472 (1495)
Q Consensus 1400 Lr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~~-~DrIlVL~~G~iv-E~gsp~~Ll~~ 1472 (1495)
+++|+||||||||++||+.+...+.+.|++. +.|||+|||+++.+.. ||+|++|++|+++ +.|++.++++.
T Consensus 454 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~ 526 (530)
T PRK15064 454 MQKPNVLVMDEPTNHMDMESIESLNMALEKY--EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRS 526 (530)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHH
Confidence 9999999999999999999999999999886 4699999999999875 9999999999998 77999988754
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-62 Score=636.62 Aligned_cols=547 Identities=19% Similarity=0.225 Sum_probs=446.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 289 LKLIKAMFRSVWKDVLLTALVAIVCTLATYVGPYLIDTLVQYLSGKRDFENEGYALVSAFCVAKLVECLCQRFFVFRLEQ 368 (1495)
Q Consensus 289 ~~l~~al~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~ 368 (1495)
.+.++..++.+++.+....+..++..++.++.|++++.++|.+..... ....+.++++++++.++..++.....+...+
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~-~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~~ 205 (694)
T TIGR01846 127 FSWFIPAIIRYRKQFREVLLISLALQLFALVTPLLFQVVIDKVLVHRG-LSTLSVLALAMLAVAIFEPALGGLRTYLFAH 205 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666778888888888999999999999999999998753322 1223344455555556667777777778888
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcchhcCCCHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 369 LGIRLRAALIAMIYNKGLKLSSQAKQGNTSGEIINFMTVDAERVAELSW-YIHDPWLFLFEVALSFLILYKSLGIASVAA 447 (1495)
Q Consensus 369 ~g~rir~~L~~~iy~K~L~ls~~~~~~~~~G~i~nl~s~D~~~i~~~~~-~~~~~w~~pl~i~~~~~lL~~~lG~~~l~g 447 (1495)
++.++...+...+|+|.++++....++.++|++++++ +|++.+.++.. .+.......+.+++.+++++..-++.+++.
T Consensus 206 ~~~~~~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~ 284 (694)
T TIGR01846 206 LTSRIDVELGARLYRHLLGLPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGVV 284 (694)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999 69999998753 333444344444445555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 448 FFGTVIFMLVNVPLSTVQEKFQNELMKSKDERMKATSEILRNMRILKLQGWELKFLSKTIDLRKSESGWLKRCLYTSSIT 527 (1495)
Q Consensus 448 l~~~i~~~~~~~~~~~~~~~~~~~~m~~~D~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~ 527 (1495)
++++++...+...+.+..++..++.++..+++...+.|.++|+++||.++.|+.+.+++.+..++..+...+........
T Consensus 285 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (694)
T TIGR01846 285 IGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIA 364 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666777777888888889999999999999999999999999999998888776655554444444433333
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc
Q 000452 528 SFVFWCAP--TFVSVITFGTCILLKVPLESGKVLSAIATFRLLQILIYKLPAIISMTIQTKVSLQRIASFFCLDELQPDL 605 (1495)
Q Consensus 528 ~~~~~~~p--~~v~~~~f~~~~~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~ 605 (1495)
..+..... ..+.++.++.+.+..+.+|.|.++++..+...+..|+..+...+..+.+++++++|+.++++.++..+..
T Consensus 365 ~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~ 444 (694)
T TIGR01846 365 GQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSA 444 (694)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCC
Confidence 22222222 1233456777877888999999999999999999999999999999999999999999999876543221
Q ss_pred ccCCCCCCCcccEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe---
Q 000452 606 VEKQPRGSSETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT--- 682 (1495)
Q Consensus 606 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~--- 682 (1495)
...+.......|+++|++|+|+.+ ++++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.
T Consensus 445 -~~~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~ 522 (694)
T TIGR01846 445 -GLAALPELRGAITFENIRFRYAPD-SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLA 522 (694)
T ss_pred -CCCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehh
Confidence 111111223469999999999743 457999999999999999999999999999999999999999999999984
Q ss_pred ----------EEEEccCCcccCccHHHHHhcCCC-CCHHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHH
Q 000452 683 ----------KAYVAQSPWIQSGKIEDNILFGKE-MDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRI 751 (1495)
Q Consensus 683 ----------~ayv~Q~~~l~~~ti~enI~fg~~-~~~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv 751 (1495)
++||||+|+++++|++|||.++.+ .++++..++++.++++++++.+|+|.+|.+|++|.+||||||||+
T Consensus 523 ~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri 602 (694)
T TIGR01846 523 IADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRI 602 (694)
T ss_pred hCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHH
Confidence 589999999999999999999864 678899999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEecCCCccccCCEEEEEeCCEEEEecChHHHHhc
Q 000452 752 QIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVINS 831 (1495)
Q Consensus 752 ~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 831 (1495)
+||||++++|+|+|||||||+||+++++.+.+. +....+++|+|++||+++.++.||+|++|++|++++.|+++++++.
T Consensus 603 ~lARall~~~~ililDEpts~LD~~~~~~i~~~-l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~~ 681 (694)
T TIGR01846 603 AIARALVGNPRILIFDEATSALDYESEALIMRN-MREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLAL 681 (694)
T ss_pred HHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHH-HHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHHc
Confidence 999999999999999999999999999988765 4555678999999999999999999999999999999999999988
Q ss_pred CCchhHHHH
Q 000452 832 GTDFMELVD 840 (1495)
Q Consensus 832 ~~~~~~l~~ 840 (1495)
++.|.++..
T Consensus 682 ~~~y~~l~~ 690 (694)
T TIGR01846 682 QGLYARLWQ 690 (694)
T ss_pred CChHHHHHH
Confidence 888888765
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-62 Score=622.84 Aligned_cols=504 Identities=20% Similarity=0.219 Sum_probs=392.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcchhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 294 AMFRSVWKDVLLTALVAIVCTLATYVGPYLIDTLVQYLSGKRDFENEGYA-LVSAFCVAKLVECLCQRFFVFRLEQLGIR 372 (1495)
Q Consensus 294 al~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~-l~~~l~~~~~~~~~~~~~~~~~~~~~g~r 372 (1495)
.+++.+++.++...++.++..++..+.|++++.+++.+..... ...+. +..++++..++..++.....+...+.+.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (529)
T TIGR02868 6 PLLQPRTRRLVVAILLGALALGSAVALLGVSAWLISRAAEMPP--VLYLSVAAVAVRAFGIGRAVFRYLERLVGHDAALR 83 (529)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777788888899999999999999999987653221 11111 11112223344455555555666778889
Q ss_pred HHHHHHHHHHHHHhcCCcchhcCCCHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 373 LRAALIAMIYNKGLKLSSQAKQGNTSGEIINFMTVDAERVAELSWY-IHDPWLFLFEVALSFLILYKSLGIASVAAFFGT 451 (1495)
Q Consensus 373 ir~~L~~~iy~K~L~ls~~~~~~~~~G~i~nl~s~D~~~i~~~~~~-~~~~w~~pl~i~~~~~lL~~~lG~~~l~gl~~~ 451 (1495)
+...++..+|+|.++++....+++++|+++|++++|++++.+.+.. +..+....+.+++++++++..-...+++.++.+
T Consensus 84 ~~~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~ 163 (529)
T TIGR02868 84 SLGRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAALVLAAGL 163 (529)
T ss_pred HHHHHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999987654 334444555555555555443333334333333
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 452 VIFMLVN-VPLSTVQEKFQNELMKSKDERMKATSEILRNMRILKLQGWELKFLSKTIDLRKSESGWLKRCLYTSSITSFV 530 (1495)
Q Consensus 452 i~~~~~~-~~~~~~~~~~~~~~m~~~D~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~ 530 (1495)
.++.++. ....+..++..++..+..++..+...|.++|+++||.+++|+.+.+++.+..++..+...+.....+....+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (529)
T TIGR02868 164 LLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLGAAA 243 (529)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333332 223334455667777888999999999999999999999999999998887665555554444444433333
Q ss_pred HHHHHH--HHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccC
Q 000452 531 FWCAPT--FVSVITFGTCILLKVPLESGKVLSAIATFRLLQILIYKLPAIISMTIQTKVSLQRIASFFCLDELQPDLVEK 608 (1495)
Q Consensus 531 ~~~~p~--~v~~~~f~~~~~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~~~~ 608 (1495)
...... .+.++.++.+.+.++.++.+.+.+++.+...+..|+..++..+..+.+++++.+|+.++++.++..++....
T Consensus 244 ~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~ 323 (529)
T TIGR02868 244 QLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEGVVP 323 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCCC
Confidence 222222 223345566777788899999999999999999999999999999999999999999999776532211110
Q ss_pred CC--CCCCcccEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcC-----
Q 000452 609 QP--RGSSETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG----- 681 (1495)
Q Consensus 609 ~~--~~~~~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g----- 681 (1495)
.+ .......|+++|++|+|+. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 324 ~~~~~~~~~~~I~~~~vsf~Y~~--~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~ 401 (529)
T TIGR02868 324 AAGALGLGKPTLELRDLSFGYPG--SPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSS 401 (529)
T ss_pred CCcccCCCCceEEEEEEEEecCC--CCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhh
Confidence 00 1112246999999999963 34699999999999999999999999999999999999999999999999
Q ss_pred -------eEEEEccCCcccCccHHHHHhcCCC-CCHHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHH
Q 000452 682 -------TKAYVAQSPWIQSGKIEDNILFGKE-MDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQI 753 (1495)
Q Consensus 682 -------~~ayv~Q~~~l~~~ti~enI~fg~~-~~~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 753 (1495)
.++||||+|++|++||+|||.+|.+ .++++++++++.++++++++.+|+|++|.+||+|.+||||||||++|
T Consensus 402 ~~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiai 481 (529)
T TIGR02868 402 LQDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLAL 481 (529)
T ss_pred HHHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHH
Confidence 6899999999999999999999865 68899999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q 000452 754 ARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQV 802 (1495)
Q Consensus 754 ARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~ 802 (1495)
|||++++|+|+||||||||||+++++.|.+.+ ....+++|+|+|||++
T Consensus 482 ARall~~~~iliLDE~TSaLD~~te~~I~~~l-~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 482 ARALLADAPILLLDEPTEHLDAGTESELLEDL-LAALSGKTVVVITHHL 529 (529)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH-HHhcCCCEEEEEecCC
Confidence 99999999999999999999999999998654 4556789999999985
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-62 Score=624.04 Aligned_cols=541 Identities=21% Similarity=0.280 Sum_probs=422.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 295 MFRSVWKDVLLTALVAIVCTLATYVGPYLIDTLVQYLSGKRDFENEGYALVSAFCVAKLVECLCQRFFVFRLEQLGIRLR 374 (1495)
Q Consensus 295 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~g~rir 374 (1495)
+++.+++.+.+.+++.++..++.++.|+++..++|.+.... ... .+++.+++..++..+......+...++..+++
T Consensus 13 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (588)
T PRK13657 13 YLGAEKRLGILLAVANVLLAAATFAEPILFGRIIDAISGKG---DIF-PLLAAWAGFGLFNIIAGVLVARHADRLAHRRR 88 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---cHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777888888899999999999999999999875432 111 11112222222223333334555677788889
Q ss_pred HHHHHHHHHHHhcCCcchhcCCCHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 375 AALIAMIYNKGLKLSSQAKQGNTSGEIINFMTVDAERVAELSW-YIHDPWLFLFEVALSFLILYKSLGIASVAAFFGTVI 453 (1495)
Q Consensus 375 ~~L~~~iy~K~L~ls~~~~~~~~~G~i~nl~s~D~~~i~~~~~-~~~~~w~~pl~i~~~~~lL~~~lG~~~l~gl~~~i~ 453 (1495)
..+...+|+|.++++.....+.+.|+++++++.|++.+.+... .+.......+..++.+++++..-.+.+++.++++++
T Consensus 89 ~~l~~~l~~~l~~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~l 168 (588)
T PRK13657 89 LAVLTEYFERIIQLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSLVLVVLGIV 168 (588)
T ss_pred HHHHHHHHHHHHhCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999876532 333333333333333333333333334444444455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Q 000452 454 FMLVNVPLSTVQEKFQNELMKSKDERMKATSEILRNMRILKLQGWELKFLSKTIDLRKSESGWLKRCLYTSSITSFV--F 531 (1495)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~m~~~D~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~--~ 531 (1495)
...+...+.+..++.+++.++..++......|.++|+++||.|+.|+.+.+++.+.-++-.+...+..........+ .
T Consensus 169 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (588)
T PRK13657 169 YTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLNRA 248 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566677788888888999999999999999999999999999999877776554433322222221111111111 1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCCC
Q 000452 532 WCAPTFVSVITFGTCILLKVPLESGKVLSAIATFRLLQILIYKLPAIISMTIQTKVSLQRIASFFCLDELQPDLVEKQPR 611 (1495)
Q Consensus 532 ~~~p~~v~~~~f~~~~~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~~~~~~~ 611 (1495)
......+.++.++.+.+..+.+|.|.+++++.++..+..|+..+...+..+.+++.+++|+.++++.++..+......+.
T Consensus 249 ~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~ 328 (588)
T PRK13657 249 ASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDPPGAIDL 328 (588)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCCCc
Confidence 11122344556777888888999999999999999999999999999999999999999999998764432211111111
Q ss_pred CCCcccEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcC----------
Q 000452 612 GSSETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG---------- 681 (1495)
Q Consensus 612 ~~~~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g---------- 681 (1495)
......|+++|++|+|+. ++++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 329 ~~~~~~I~~~~vsf~y~~--~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~ 406 (588)
T PRK13657 329 GRVKGAVEFDDVSFSYDN--SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRAS 406 (588)
T ss_pred CCCCCeEEEEEEEEEeCC--CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHH
Confidence 112246999999999963 35799999999999999999999999999999999999999999999998
Q ss_pred ---eEEEEccCCcccCccHHHHHhcCCC-CCHHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHHHHHh
Q 000452 682 ---TKAYVAQSPWIQSGKIEDNILFGKE-MDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARAL 757 (1495)
Q Consensus 682 ---~~ayv~Q~~~l~~~ti~enI~fg~~-~~~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl 757 (1495)
.++||||+|++|++|++|||.++.+ .++++..++++.++++++++.+|.|.+|.+|++|.+||||||||++||||+
T Consensus 407 ~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARal 486 (588)
T PRK13657 407 LRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARAL 486 (588)
T ss_pred HHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHH
Confidence 3699999999999999999999964 678889999999999999999999999999999999999999999999999
Q ss_pred ccCCCEeEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEecCCCccccCCEEEEEeCCEEEEecChHHHHhcCCchhH
Q 000452 758 YQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVINSGTDFME 837 (1495)
Q Consensus 758 ~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 837 (1495)
+++|+|+|||||||+||+++++.+++.+ ....+++|+|+|||+++.++.||+|++|++|++.+.|+++++++.++.|.+
T Consensus 487 l~~~~iliLDEpts~LD~~t~~~i~~~l-~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~~~~~~y~~ 565 (588)
T PRK13657 487 LKDPPILILDEATSALDVETEAKVKAAL-DELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVARGGRFAA 565 (588)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHH-HHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHHHCCChHHH
Confidence 9999999999999999999999997654 445578999999999999999999999999999999999999988888888
Q ss_pred HHHHH
Q 000452 838 LVDAH 842 (1495)
Q Consensus 838 l~~~~ 842 (1495)
+....
T Consensus 566 l~~~~ 570 (588)
T PRK13657 566 LLRAQ 570 (588)
T ss_pred HHHHh
Confidence 77643
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-62 Score=621.33 Aligned_cols=541 Identities=21% Similarity=0.220 Sum_probs=417.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCCc-chhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 295 MFRSVWKDVLLTALVAIVCTLATYVGPYLIDTLVQYLS-GKRDF-ENEGYA-LVSAFCVAKLVECLCQRFFVFRLEQLGI 371 (1495)
Q Consensus 295 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~-~~~~~-~~~g~~-l~~~l~~~~~~~~~~~~~~~~~~~~~g~ 371 (1495)
+.+.+++.+++..++.++..++..+.|++++.+++... ..... ....+. .++++++..++..++.....+...+.+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (574)
T PRK11160 10 LYKRHWFMLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYGERLVSHDATF 89 (574)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677788888889999999999999999999998642 21100 011111 2223333444555666666667778899
Q ss_pred HHHHHHHHHHHHHHhcCCcchhcCCCHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 372 RLRAALIAMIYNKGLKLSSQAKQGNTSGEIINFMTVDAERVAELSWY-IHDPWLFLFEVALSFLILYKSLGIASVAAFFG 450 (1495)
Q Consensus 372 rir~~L~~~iy~K~L~ls~~~~~~~~~G~i~nl~s~D~~~i~~~~~~-~~~~w~~pl~i~~~~~lL~~~lG~~~l~gl~~ 450 (1495)
++...+...+|+|.++++....++.++|++++++++|++++.+++.. +..+....+.+++++++++..-...+++.+++
T Consensus 90 ~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~ 169 (574)
T PRK11160 90 RVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTLALTLGGI 169 (574)
T ss_pred HHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999987643 44444555555555555543332223322222
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 451 TVIF-MLVNVPLSTVQEKFQNELMKSKDERMKATSEILRNMRILKLQGWELKFLSKTIDLRKSESGWLKRCLYTSSITSF 529 (1495)
Q Consensus 451 ~i~~-~~~~~~~~~~~~~~~~~~m~~~D~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~ 529 (1495)
+.+. ..+...+.+..++..++..+..++....+.|.++|+++||.|+.|+.+.+++.+..++-.+...+.....+....
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (574)
T PRK11160 170 LLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANLTGLSQA 249 (574)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 223345566667778888888899999999999999999999999998888777655444433333333332222
Q ss_pred HHHHHH--HHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccc
Q 000452 530 VFWCAP--TFVSVITFGTCILLKVPLESGKVLSAIATFRL-LQILIYKLPAIISMTIQTKVSLQRIASFFCLDELQPDLV 606 (1495)
Q Consensus 530 ~~~~~p--~~v~~~~f~~~~~~~~~L~~~~vft~lalf~~-l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~~ 606 (1495)
+..... ..+.++.++.+. .++.++.|..++++.+... ...|+..++..+..+.+++.|.+||.++++.++..++..
T Consensus 250 ~~~~~~~~~~~~i~~~g~~~-~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~~~~ 328 (574)
T PRK11160 250 LMILANGLTVVLMLWLAAGG-VGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPEVTFPT 328 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHH-hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCc
Confidence 221111 122233445554 4667888988776665433 356888899999999999999999999998654321111
Q ss_pred cCCCCCCCcccEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe----
Q 000452 607 EKQPRGSSETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT---- 682 (1495)
Q Consensus 607 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~---- 682 (1495)
.. +.......|+++|++|+|+.+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 329 ~~-~~~~~~~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~ 406 (574)
T PRK11160 329 TS-TAAADQVSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIAD 406 (574)
T ss_pred cc-CCCCCCCeEEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhh
Confidence 11 111123469999999999632 357999999999999999999999999999999999999999999999984
Q ss_pred ---------EEEEccCCcccCccHHHHHhcCCC-CCHHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHH
Q 000452 683 ---------KAYVAQSPWIQSGKIEDNILFGKE-MDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQ 752 (1495)
Q Consensus 683 ---------~ayv~Q~~~l~~~ti~enI~fg~~-~~~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~ 752 (1495)
++||||+|++|++|++|||.++.+ .++++..++++.++++++++. |+|.+|.+||+|.+||||||||++
T Consensus 407 ~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSgGqrqRia 485 (574)
T PRK11160 407 YSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQRRLG 485 (574)
T ss_pred CCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCHHHHHHHH
Confidence 699999999999999999999875 688899999999999999999 999999999999999999999999
Q ss_pred HHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEecCCCccccCCEEEEEeCCEEEEecChHHHHhcC
Q 000452 753 IARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVINSG 832 (1495)
Q Consensus 753 LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~ 832 (1495)
||||++++|+|+|||||||+||+++++.+.+. +....+++|+|+|||+++.++.||+|++|++|++++.|+++|+++++
T Consensus 486 lARall~~~~ililDE~ts~lD~~t~~~i~~~-l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 564 (574)
T PRK11160 486 IARALLHDAPLLLLDEPTEGLDAETERQILEL-LAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLAQQ 564 (574)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCHHHHHhcC
Confidence 99999999999999999999999999988754 55556789999999999999999999999999999999999999988
Q ss_pred CchhHHHH
Q 000452 833 TDFMELVD 840 (1495)
Q Consensus 833 ~~~~~l~~ 840 (1495)
+.|.++.+
T Consensus 565 g~y~~l~~ 572 (574)
T PRK11160 565 GRYYQLKQ 572 (574)
T ss_pred cHHHHHHh
Confidence 88877653
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-65 Score=641.55 Aligned_cols=439 Identities=22% Similarity=0.346 Sum_probs=334.9
Q ss_pred EEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCC--CCcEEEEcC--------------
Q 000452 618 IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPK--ISGTLKLCG-------------- 681 (1495)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~--~~G~v~~~g-------------- 681 (1495)
++++|++++|+ ++++|+|+||++++|++++|+||||||||||+++|+|+.+| ++|+|.++|
T Consensus 2 l~i~~l~~~~~---~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (500)
T TIGR02633 2 LEMKGIVKTFG---GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERA 78 (500)
T ss_pred EEEEeEEEEeC---CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 78999999995 35799999999999999999999999999999999999987 799999987
Q ss_pred eEEEEccCCcccC-ccHHHHHhcCCCC-------CHH----HHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHH
Q 000452 682 TKAYVAQSPWIQS-GKIEDNILFGKEM-------DRE----RYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQ 749 (1495)
Q Consensus 682 ~~ayv~Q~~~l~~-~ti~enI~fg~~~-------~~~----~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkq 749 (1495)
.++|++|++.++. .|++||+.++... +.+ +.+++++.+++.... ......+|||||||
T Consensus 79 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgG~~q 148 (500)
T TIGR02633 79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADN----------VTRPVGDYGGGQQQ 148 (500)
T ss_pred CEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCc----------ccCchhhCCHHHHH
Confidence 2799999987764 5999999886431 111 223333333332100 12446789999999
Q ss_pred HHHHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEecCCCcccc-CCEEEEEeCCEEEEecChHHH
Q 000452 750 RIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYTDV 828 (1495)
Q Consensus 750 Rv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 828 (1495)
||+||||++.+|+++||||||++||+...+.+.+.+.....+|+|+|++||+++++.. ||+|++|++|+++..|+.+++
T Consensus 149 rv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 149 LVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTM 228 (500)
T ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccC
Confidence 9999999999999999999999999999988876433333458899999999999875 999999999998764421100
Q ss_pred HhcCCchhHHHHHHHhhhcccccccCCCCCCCCCCCCCCCCCCcccccccccccccccccccccccchhhhhhHHHHHhh
Q 000452 829 INSGTDFMELVDAHKQALSTLDSIEGRPLSEKGSANGENDGTSATDGVVKEVENKEVQNDREDKVAEPQRQLVQEEEREK 908 (1495)
Q Consensus 829 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 908 (1495)
. . +.
T Consensus 229 ~------------------------------------------------------------------------~-~~--- 232 (500)
T TIGR02633 229 S------------------------------------------------------------------------E-DD--- 232 (500)
T ss_pred C------------------------------------------------------------------------H-HH---
Confidence 0 0 00
Q ss_pred cCchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhcccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 000452 909 GKVEFSVYWKYITAAYGGVLVPFILLAQTLFQILQIASNYWIAWATPASKDIKPRVTGSMLLIVFVALAFGSSFCILARS 988 (1495)
Q Consensus 909 g~v~~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~ 988 (1495)
.. .. .. ..
T Consensus 233 ------~~----~~------------------------------~~-----~~--------------------------- 240 (500)
T TIGR02633 233 ------II----TM------------------------------MV-----GR--------------------------- 240 (500)
T ss_pred ------HH----HH------------------------------Hh-----Cc---------------------------
Confidence 00 00 00 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCcccccccccccchhHHhcchhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 989 TLLATAGYKTATLLFNKMHYCIFRAPMSFFDATPSGRIINRASTDQSAVDLSIPALIGSFAFSIIRVLGVIGVMSLVAWQ 1068 (1495)
Q Consensus 989 ~~~~~~~~~~s~~l~~~ll~~ll~ap~~ffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 1068 (1495)
+
T Consensus 241 -------------------------~------------------------------------------------------ 241 (500)
T TIGR02633 241 -------------------------E------------------------------------------------------ 241 (500)
T ss_pred -------------------------c------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcchHHHHhhccHHHHHHHHHHHHHHhhchHHHHHH
Q 000452 1069 VFIVFIPVIATCIWYQQYYISSARELSRLVGVCKAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGYSRPTFHVAA 1148 (1495)
Q Consensus 1069 ~~~v~ip~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~ 1148 (1495)
T Consensus 242 -------------------------------------------------------------------------------- 241 (500)
T TIGR02633 242 -------------------------------------------------------------------------------- 241 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCC
Q 000452 1149 AMEWLGFRLDMLSNITFAFSLVFLISIPKGFIDPAIAGLAVTYGLTLNNLQAMLIWLACQMENKIISVERIFQYTCIPSE 1228 (1495)
Q Consensus 1149 ~~~wl~~rl~~l~~~~~~~~~~~~~~~~~~~~~~~~~gl~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~E 1228 (1495)
.. + ..+.+
T Consensus 242 -------------------------------~~------------------------------------~-----~~~~~ 249 (500)
T TIGR02633 242 -------------------------------IT------------------------------------S-----LYPHE 249 (500)
T ss_pred -------------------------------cc------------------------------------c-----ccccc
Confidence 00 0 00000
Q ss_pred CCCccccCCCCCCCCCcceEEEeeeeEEeCCC-CCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccC-CccEE
Q 000452 1229 PPLEIEESRPNHSWPSHGKIDLRDLQVRYAPH-MPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEP-AAGQI 1306 (1495)
Q Consensus 1229 ~~~~~~~~~~~~~wp~~g~I~f~nv~~~Y~~~-~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep-~~G~I 1306 (1495)
+. + +..-.|+++|++++|+.+ ...+|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|
T Consensus 250 ~~-------~----~~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i 318 (500)
T TIGR02633 250 PH-------E----IGDVILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNV 318 (500)
T ss_pred cc-------C----CCCceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEE
Confidence 00 0 011259999999999432 23599999999999999999999999999999999999995 89999
Q ss_pred EEcCEeCCCCCH-HHHhcccEEEcccC---cCCC-CcHHHhcCCC-----CC---CC----HHHHHHHHHHcCCcHHHHh
Q 000452 1307 LIDGIDISLIGL-HDLRTRLSIIPQDP---VMFE-GTVRSNVDPL-----EE---YT----DEQIWEALDKCQLGDEVRK 1369 (1495)
Q Consensus 1307 ~IDG~dI~~i~l-~~LR~~isiIpQdp---~LF~-GTIR~NLdp~-----~~---~s----d~ei~~aL~~~~L~~~v~~ 1369 (1495)
.++|.++...+. ..+|++++|+||++ .+|. -|+++|+... .. .. .+++.++++++++.+.
T Consensus 319 ~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--- 395 (500)
T TIGR02633 319 FINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTA--- 395 (500)
T ss_pred EECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCC---
Confidence 999999875443 56788999999997 3665 4999999642 11 11 2346677777766311
Q ss_pred ccCCcccccccCCCCCCchHHHHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc
Q 000452 1370 KEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHF-SDCTVITIAHRITSVID 1448 (1495)
Q Consensus 1370 lp~gLdt~v~e~G~nLS~GQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f-~~~TVI~IAHRl~ti~~ 1448 (1495)
-.|.++ ..||||||||++|||||+++|++|||||||++||+.+...+.+.|++.. .+.|||+|+|+++.+..
T Consensus 396 ---~~~~~~----~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~ 468 (500)
T TIGR02633 396 ---SPFLPI----GRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLG 468 (500)
T ss_pred ---CccCcc----ccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHH
Confidence 123333 4699999999999999999999999999999999999999999988754 47899999999999875
Q ss_pred -cCEEEEEeCcEEEEecChhHH
Q 000452 1449 -SDMVLLLSHGLIEEYDSPRKL 1469 (1495)
Q Consensus 1449 -~DrIlVL~~G~ivE~gsp~~L 1469 (1495)
||+|++|++|+++..++..++
T Consensus 469 ~~d~v~~l~~G~i~~~~~~~~~ 490 (500)
T TIGR02633 469 LSDRVLVIGEGKLKGDFVNHAL 490 (500)
T ss_pred hCCEEEEEECCEEEEEEccccC
Confidence 999999999999988765543
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-62 Score=621.78 Aligned_cols=529 Identities=20% Similarity=0.275 Sum_probs=416.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 000452 310 AIVCTLATYVGPYLIDTLVQYLSGKRDFENEGYALVSAFCVAKLVECLCQRFFVFRLEQLGIRLRAALIAMIYNKGLKLS 389 (1495)
Q Consensus 310 ~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~g~rir~~L~~~iy~K~L~ls 389 (1495)
.++..++..+.|++++.+++.+..........+.+++.++++.++..++.....+...+.+.++...+...+|+|.++++
T Consensus 4 ~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~ 83 (569)
T PRK10789 4 LIIIAMLQLIPPKVVGIIVDGVTEQHMTTGQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQH 83 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34556667788999999999775432111223333444445555555666555666677889999999999999999999
Q ss_pred cchhcCCCHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 390 SQAKQGNTSGEIINFMTVDAERVAELSW-YIHDPWLFLFEVALSFLILYKSLGI-ASVAAFFGTVIFMLVNVPLSTVQEK 467 (1495)
Q Consensus 390 ~~~~~~~~~G~i~nl~s~D~~~i~~~~~-~~~~~w~~pl~i~~~~~lL~~~lG~-~~l~gl~~~i~~~~~~~~~~~~~~~ 467 (1495)
.....++++|+++|++++|++.+..... .+..++..++..++++++++..+++ .+++.++++.+.+.+...+.+...+
T Consensus 84 ~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~ 163 (569)
T PRK10789 84 PEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHE 163 (569)
T ss_pred HHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998899999999999999999986543 3455555555555555544334444 3344444444444555566677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Q 000452 468 FQNELMKSKDERMKATSEILRNMRILKLQGWELKFLSKTIDLRKSESGWLKRCLYTSSITSFVFWCAP--TFVSVITFGT 545 (1495)
Q Consensus 468 ~~~~~m~~~D~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~~~~~p--~~v~~~~f~~ 545 (1495)
..++.++..++..+.+.|.++|+++||.+++|+.+.++..+..++..+...+.....+....+..... ..+.++.++.
T Consensus 164 ~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~ 243 (569)
T PRK10789 164 RFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGS 243 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777888888889999999999999999999998877766543333322222222222211111111 1233445667
Q ss_pred HHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCCCCCCcccEEEEeeEE
Q 000452 546 CILLKVPLESGKVLSAIATFRLLQILIYKLPAIISMTIQTKVSLQRIASFFCLDELQPDLVEKQPRGSSETAIEIADGNF 625 (1495)
Q Consensus 546 ~~~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~~~~~~~~~~~~~i~~~~~~~ 625 (1495)
+.+.++.++.|.+++++.++..+..|+..++..+..+.+++++.+||.++++.++..+..... ....+..|+++|++|
T Consensus 244 ~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~~~--~~~~~~~I~~~~v~~ 321 (569)
T PRK10789 244 WMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGSEP--VPEGRGELDVNIRQF 321 (569)
T ss_pred HHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCC--CCCCCCcEEEEEEEE
Confidence 777888999999999999999999999999999999999999999999999865432211111 111234699999999
Q ss_pred EecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe-------------EEEEccCCcc
Q 000452 626 SWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------KAYVAQSPWI 692 (1495)
Q Consensus 626 ~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~-------------~ayv~Q~~~l 692 (1495)
+|+.. ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|. ++||+|+|++
T Consensus 322 ~y~~~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l 400 (569)
T PRK10789 322 TYPQT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFL 400 (569)
T ss_pred ECCCC-CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCee
Confidence 99743 457999999999999999999999999999999999999999999999984 5999999999
Q ss_pred cCccHHHHHhcCC-CCCHHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHHHHHhccCCCEeEecCcCC
Q 000452 693 QSGKIEDNILFGK-EMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFS 771 (1495)
Q Consensus 693 ~~~ti~enI~fg~-~~~~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~s 771 (1495)
+++|++|||.++. +.++++++++++.+++++++..+|+|.+|.+|++|.+||||||||++||||++++|+|+|||||||
T Consensus 401 f~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts 480 (569)
T PRK10789 401 FSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALS 480 (569)
T ss_pred ccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccc
Confidence 9999999999985 478889999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHHHHhCCCEEEEEecCCCccccCCEEEEEeCCEEEEecChHHHHhcCCchhHHHHHH
Q 000452 772 AVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVINSGTDFMELVDAH 842 (1495)
Q Consensus 772 aLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~l~~~~ 842 (1495)
+||+++++++.+. +....+++|+|++||+++.++.||+|++|++|++++.|+++++++..+.|.++...+
T Consensus 481 ~LD~~~~~~i~~~-l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~ 550 (569)
T PRK10789 481 AVDGRTEHQILHN-LRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQSGWYRDMYRYQ 550 (569)
T ss_pred cCCHHHHHHHHHH-HHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHcCChHHHHHHHh
Confidence 9999999999765 455567999999999999999999999999999999999999998888888877544
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-62 Score=657.48 Aligned_cols=216 Identities=14% Similarity=0.203 Sum_probs=188.2
Q ss_pred cceEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcc
Q 000452 1245 HGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTR 1324 (1495)
Q Consensus 1245 ~g~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~ 1324 (1495)
...|+++|++++|+.+...+|+||||+|++||++||+|++|||||||+++|.|+.+|++|+|.++|.|+.+ ..++.|++
T Consensus 1935 ~~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~ 2013 (2272)
T TIGR01257 1935 TDILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQN 2013 (2272)
T ss_pred CceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhh
Confidence 34699999999997543569999999999999999999999999999999999999999999999999975 46678899
Q ss_pred cEEEcccCcCCCC-cHHHhcCCC---CCCCH----HHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHH
Q 000452 1325 LSIIPQDPVMFEG-TVRSNVDPL---EEYTD----EQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLG 1396 (1495)
Q Consensus 1325 isiIpQdp~LF~G-TIR~NLdp~---~~~sd----~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LA 1396 (1495)
|||+||++.+++. |+||||... ...+. +.+.++++.++|.+...+.+ ..||||||||++||
T Consensus 2014 IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~-----------~~LSGGqKqRLslA 2082 (2272)
T TIGR01257 2014 MGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLA-----------GTYSGGNKRKLSTA 2082 (2272)
T ss_pred EEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCCh-----------hhCCHHHHHHHHHH
Confidence 9999999998875 999999632 11222 34556788888876544433 36899999999999
Q ss_pred HHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-cCEEEEEeCcEEEEecChhHHhhc
Q 000452 1397 RVLLKRRKILMLDEATASVDTATDNLIQQSLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLEN 1472 (1495)
Q Consensus 1397 RALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~Ll~~ 1472 (1495)
|||+.+|+||+|||||++||+.+.+.+.+.|++.. +++|||+++|+++.+.. ||||++|++|++++.|++++|.++
T Consensus 2083 ~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~ 2160 (2272)
T TIGR01257 2083 IALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSK 2160 (2272)
T ss_pred HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHH
Confidence 99999999999999999999999999999998863 57999999999999875 999999999999999999999654
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-65 Score=637.74 Aligned_cols=435 Identities=22% Similarity=0.325 Sum_probs=335.5
Q ss_pred cEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcC--------------e
Q 000452 617 AIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG--------------T 682 (1495)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g--------------~ 682 (1495)
.++++|++++|+ ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 4 ~l~~~~l~~~~~---~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 80 (501)
T PRK11288 4 YLSFDGIGKTFP---GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAG 80 (501)
T ss_pred eEEEeeeEEEEC---CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCC
Confidence 589999999995 24699999999999999999999999999999999999999999999876 2
Q ss_pred EEEEccCCcccC-ccHHHHHhcCCC------CCH----HHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHH
Q 000452 683 KAYVAQSPWIQS-GKIEDNILFGKE------MDR----ERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRI 751 (1495)
Q Consensus 683 ~ayv~Q~~~l~~-~ti~enI~fg~~------~~~----~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv 751 (1495)
++|++|++.++. .|++||+.++.. .+. ++.+++++.+++.. .......+||||||||+
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGq~qrv 149 (501)
T PRK11288 81 VAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDI-----------DPDTPLKYLSIGQRQMV 149 (501)
T ss_pred EEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCC-----------CcCCchhhCCHHHHHHH
Confidence 689999988775 599999998631 122 23334444444321 12456789999999999
Q ss_pred HHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEecCCCcccc-CCEEEEEeCCEEEEecChHHHHh
Q 000452 752 QIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYTDVIN 830 (1495)
Q Consensus 752 ~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 830 (1495)
+||||++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++++.. ||+|++|++|+++..++..+
T Consensus 150 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~--- 226 (501)
T PRK11288 150 EIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDDMA--- 226 (501)
T ss_pred HHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCccc---
Confidence 99999999999999999999999999988876443333358999999999999865 99999999999875331000
Q ss_pred cCCchhHHHHHHHhhhcccccccCCCCCCCCCCCCCCCCCCcccccccccccccccccccccccchhhhhhHHHHHhhcC
Q 000452 831 SGTDFMELVDAHKQALSTLDSIEGRPLSEKGSANGENDGTSATDGVVKEVENKEVQNDREDKVAEPQRQLVQEEEREKGK 910 (1495)
Q Consensus 831 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~ 910 (1495)
. .. .++
T Consensus 227 ------------------------------------~---------------------~~------------~~~----- 232 (501)
T PRK11288 227 ------------------------------------Q---------------------VD------------RDQ----- 232 (501)
T ss_pred ------------------------------------c---------------------CC------------HHH-----
Confidence 0 00 000
Q ss_pred chHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhcccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 911 VEFSVYWKYITAAYGGVLVPFILLAQTLFQILQIASNYWIAWATPASKDIKPRVTGSMLLIVFVALAFGSSFCILARSTL 990 (1495)
Q Consensus 911 v~~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~~~ 990 (1495)
+... ... .
T Consensus 233 --------~~~~------------------------------~~~-----~----------------------------- 240 (501)
T PRK11288 233 --------LVQA------------------------------MVG-----R----------------------------- 240 (501)
T ss_pred --------HHHH------------------------------hcC-----C-----------------------------
Confidence 0000 000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHccCCcccccccccccchhHHhcchhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 991 LATAGYKTATLLFNKMHYCIFRAPMSFFDATPSGRIINRASTDQSAVDLSIPALIGSFAFSIIRVLGVIGVMSLVAWQVF 1070 (1495)
Q Consensus 991 ~~~~~~~~s~~l~~~ll~~ll~ap~~ffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 1070 (1495)
+
T Consensus 241 -----------------------~-------------------------------------------------------- 241 (501)
T PRK11288 241 -----------------------E-------------------------------------------------------- 241 (501)
T ss_pred -----------------------C--------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcchHHHHhhccHHHHHHHHHHHHHHhhchHHHHHHHH
Q 000452 1071 IVFIPVIATCIWYQQYYISSARELSRLVGVCKAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGYSRPTFHVAAAM 1150 (1495)
Q Consensus 1071 ~v~ip~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~ 1150 (1495)
T Consensus 242 -------------------------------------------------------------------------------- 241 (501)
T PRK11288 242 -------------------------------------------------------------------------------- 241 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCCCC
Q 000452 1151 EWLGFRLDMLSNITFAFSLVFLISIPKGFIDPAIAGLAVTYGLTLNNLQAMLIWLACQMENKIISVERIFQYTCIPSEPP 1230 (1495)
Q Consensus 1151 ~wl~~rl~~l~~~~~~~~~~~~~~~~~~~~~~~~~gl~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~E~~ 1230 (1495)
.. +. .+.++.
T Consensus 242 -----------------------------~~------------------------------------~~-----~~~~~~ 251 (501)
T PRK11288 242 -----------------------------IG------------------------------------DI-----YGYRPR 251 (501)
T ss_pred -----------------------------cc------------------------------------cc-----cccccc
Confidence 00 00 000000
Q ss_pred CccccCCCCCCCCCcceEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcC
Q 000452 1231 LEIEESRPNHSWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDG 1310 (1495)
Q Consensus 1231 ~~~~~~~~~~~wp~~g~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG 1310 (1495)
+ +....++++|++++ .+++|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||
T Consensus 252 -------~----~~~~~l~~~~~~~~------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g 314 (501)
T PRK11288 252 -------P----LGEVRLRLDGLKGP------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDG 314 (501)
T ss_pred -------C----CCCcEEEEeccccC------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECC
Confidence 0 01125889999842 389999999999999999999999999999999999999999999999
Q ss_pred EeCCCCC-HHHHhcccEEEcccCc---CCC-CcHHHhcCCCC--C-------CC----HHHHHHHHHHcCCcHHHHhccC
Q 000452 1311 IDISLIG-LHDLRTRLSIIPQDPV---MFE-GTVRSNVDPLE--E-------YT----DEQIWEALDKCQLGDEVRKKEG 1372 (1495)
Q Consensus 1311 ~dI~~i~-l~~LR~~isiIpQdp~---LF~-GTIR~NLdp~~--~-------~s----d~ei~~aL~~~~L~~~v~~lp~ 1372 (1495)
.++...+ .+..|++++|+||+|. +|. .|+.+|+.... . .. ++++.++++.+++.+ +
T Consensus 315 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~ 388 (501)
T PRK11288 315 KPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKT------P 388 (501)
T ss_pred EECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCccc------C
Confidence 9987543 3456789999999983 554 69999986321 0 01 234666777776621 1
Q ss_pred CcccccccCCCCCCchHHHHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-cC
Q 000452 1373 KLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHF-SDCTVITIAHRITSVID-SD 1450 (1495)
Q Consensus 1373 gLdt~v~e~G~nLS~GQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f-~~~TVI~IAHRl~ti~~-~D 1450 (1495)
..+++ ..+||||||||++|||||+.+|++|||||||++||..+...+.+.|++.. .+.|||+|||+++.+.. ||
T Consensus 389 ~~~~~----~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d 464 (501)
T PRK11288 389 SREQL----IMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVAD 464 (501)
T ss_pred CccCc----cccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCC
Confidence 12333 34799999999999999999999999999999999999999999998764 37899999999999865 99
Q ss_pred EEEEEeCcEEEEecChhHHh
Q 000452 1451 MVLLLSHGLIEEYDSPRKLL 1470 (1495)
Q Consensus 1451 rIlVL~~G~ivE~gsp~~Ll 1470 (1495)
+|++|++|++++.|++++..
T Consensus 465 ~i~~l~~g~i~~~~~~~~~~ 484 (501)
T PRK11288 465 RIVVMREGRIAGELAREQAT 484 (501)
T ss_pred EEEEEECCEEEEEEccccCC
Confidence 99999999999999988765
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-62 Score=615.90 Aligned_cols=521 Identities=19% Similarity=0.206 Sum_probs=414.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 298 SVWKDVLLTALVAIVCTLATYVGPYLIDTLVQYLSGKRDFENEGYALVSAFCVAKLVECLCQRFFVFRLEQLGIRLRAAL 377 (1495)
Q Consensus 298 ~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~g~rir~~L 377 (1495)
.+++.++...++.++..++..+.|++++.++|.+..... ....+.++++++++.++..++.....+...+++.++...+
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (544)
T TIGR01842 3 KNKSTFIIVGLFSFVINILMLAPPLYMLQVYDRVLTSGS-VPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGAL 81 (544)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667778888899999999999999999997643221 1223344555566666777777777888889999999999
Q ss_pred HHHHHHHHhcCCcchhcCCCHHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 378 IAMIYNKGLKLSSQAKQGNTSGEIINFMTVDAERVAELSWY--IHDPWLFLFEVALSFLILYKSLGIASVAAFFGTVIFM 455 (1495)
Q Consensus 378 ~~~iy~K~L~ls~~~~~~~~~G~i~nl~s~D~~~i~~~~~~--~~~~w~~pl~i~~~~~lL~~~lG~~~l~gl~~~i~~~ 455 (1495)
...+|+|.++++.. ..+...+.+++|++++.+++.. +..+...++.++.. ++++..-++.+++.++++++.+
T Consensus 82 r~~~~~~ll~~~~~-----~~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~l~li~l~~~~l~~ 155 (544)
T TIGR01842 82 NQPIFAASFSATLR-----RGKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPIYL-LVCFLLHPWIGILALGGAVVLV 155 (544)
T ss_pred HHHHHHHHhcCccc-----CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999999873 2345678889999999986543 33334444433333 2333333333333333333334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 456 LVNVPLSTVQEKFQNELMKSKDERMKATSEILRNMRILKLQGWELKFLSKTIDLRKSESGWLKRCLYTSSITSFVFWCAP 535 (1495)
Q Consensus 456 ~~~~~~~~~~~~~~~~~m~~~D~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~~~~~p 535 (1495)
.+.....+..++..++.++..+++.+.+.|.++|+++||.+++|+.+.+++.+..++..+...+.....+....+.....
T Consensus 156 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (544)
T TIGR01842 156 GLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFR 235 (544)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455667777788889999999999999999999999999999999998887766655544444333333322222221
Q ss_pred --HHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCCCCC
Q 000452 536 --TFVSVITFGTCILLKVPLESGKVLSAIATFRLLQILIYKLPAIISMTIQTKVSLQRIASFFCLDELQPDLVEKQPRGS 613 (1495)
Q Consensus 536 --~~v~~~~f~~~~~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~~~~~~~~~ 613 (1495)
..+.++.++.+...++.+|+|.+++++.++..+..|+..++..+..+.+++.+.+||.++++.++..++.. .. ..
T Consensus 236 ~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~-~~--~~ 312 (544)
T TIGR01842 236 IVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPAM-PL--PE 312 (544)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCCC-CC--CC
Confidence 22344567778788889999999999999999999999999999999999999999999997655432111 11 11
Q ss_pred CcccEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe-----------
Q 000452 614 SETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT----------- 682 (1495)
Q Consensus 614 ~~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~----------- 682 (1495)
.+..++++|++|+|+. +++++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 313 ~~~~i~~~~v~~~y~~-~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~ 391 (544)
T TIGR01842 313 PEGHLSVENVTIVPPG-GKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFG 391 (544)
T ss_pred CCCeEEEEEEEEEcCC-CCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHh
Confidence 2346999999999963 2358999999999999999999999999999999999999999999999983
Q ss_pred --EEEEccCCcccCccHHHHHhcCCC-CCHHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHHHHHhcc
Q 000452 683 --KAYVAQSPWIQSGKIEDNILFGKE-MDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQ 759 (1495)
Q Consensus 683 --~ayv~Q~~~l~~~ti~enI~fg~~-~~~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~ 759 (1495)
++||||+|+++++|++|||.++.+ .+++++.++++.++++++++.+|+|++|.+|++|.+||||||||++||||+++
T Consensus 392 ~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~ 471 (544)
T TIGR01842 392 KHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYG 471 (544)
T ss_pred hheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhc
Confidence 699999999999999999986654 78889999999999999999999999999999999999999999999999999
Q ss_pred CCCEeEecCcCCccCHHHHHHHHHHHHHHH-hCCCEEEEEecCCCccccCCEEEEEeCCEEEEecChHHHHh
Q 000452 760 DADIYLFDDPFSAVDAHTGSHLFKEVLLGL-LNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVIN 830 (1495)
Q Consensus 760 ~~~illLDep~saLD~~~~~~i~~~~~~~~-~~~~tvIlvTH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~ 830 (1495)
+|+++|||||||+||+++++.+.+. +... .+++|+|++||+++.+..||+|++|++|++++.|+++++.+
T Consensus 472 ~~~ililDEpts~LD~~~~~~i~~~-l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 472 DPKLVVLDEPNSNLDEEGEQALANA-IKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred CCCEEEEeCCccccCHHHHHHHHHH-HHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 9999999999999999999888764 4444 36899999999999888899999999999999999998754
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-64 Score=632.20 Aligned_cols=440 Identities=20% Similarity=0.286 Sum_probs=337.0
Q ss_pred cEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe-------------E
Q 000452 617 AIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------K 683 (1495)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~-------------~ 683 (1495)
.++++|++++|+ ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|. +
T Consensus 3 ~l~~~~l~~~~~---~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i 79 (490)
T PRK10938 3 SLQISQGTFRLS---DTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLV 79 (490)
T ss_pred eEEEEeEEEEcC---CeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHh
Confidence 488999999995 246999999999999999999999999999999999999999999998762 5
Q ss_pred EEEccCCcc---------cCccHHHHHhcCCCCCHHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHHH
Q 000452 684 AYVAQSPWI---------QSGKIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIA 754 (1495)
Q Consensus 684 ayv~Q~~~l---------~~~ti~enI~fg~~~~~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LA 754 (1495)
+|++|++.. +..|++||+.++.. ++++.+++++..++.+.. .....+||||||||++||
T Consensus 80 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~la 147 (490)
T PRK10938 80 SDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVK-DPARCEQLAQQFGITALL-----------DRRFKYLSTGETRKTLLC 147 (490)
T ss_pred ceeccCcchhhcccchhhccccHHHhcccchh-HHHHHHHHHHHcCCHhhh-----------hCCcccCCHHHHHHHHHH
Confidence 899998643 14589999876532 245566777777765432 366789999999999999
Q ss_pred HHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEecCCCcccc-CCEEEEEeCCEEEEecChHHHHhcCC
Q 000452 755 RALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYTDVINSGT 833 (1495)
Q Consensus 755 RAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 833 (1495)
||++.+|+++||||||++||+...+.+.+.+.....+|+|+|++||+++.+.. ||++++|++|+++..|+++++.....
T Consensus 148 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~ 227 (490)
T PRK10938 148 QALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQAL 227 (490)
T ss_pred HHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhcchh
Confidence 99999999999999999999999988876543333358899999999999865 99999999999998887665431100
Q ss_pred chhHHHHHHHhhhcccccccCCCCCCCCCCCCCCCCCCcccccccccccccccccccccccchhhhhhHHHHHhhcCchH
Q 000452 834 DFMELVDAHKQALSTLDSIEGRPLSEKGSANGENDGTSATDGVVKEVENKEVQNDREDKVAEPQRQLVQEEEREKGKVEF 913 (1495)
Q Consensus 834 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~ 913 (1495)
..+ ....+ .
T Consensus 228 -~~~--------------------------------------------------------------~~~~~-~------- 236 (490)
T PRK10938 228 -VAQ--------------------------------------------------------------LAHSE-Q------- 236 (490)
T ss_pred -hhh--------------------------------------------------------------hhhhh-c-------
Confidence 000 00000 0
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhcccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 914 SVYWKYITAAYGGVLVPFILLAQTLFQILQIASNYWIAWATPASKDIKPRVTGSMLLIVFVALAFGSSFCILARSTLLAT 993 (1495)
Q Consensus 914 ~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~~~~~~ 993 (1495)
+... ..+
T Consensus 237 ---------------------------------------~~~~---~~~------------------------------- 243 (490)
T PRK10938 237 ---------------------------------------LEGV---QLP------------------------------- 243 (490)
T ss_pred ---------------------------------------cCcc---ccC-------------------------------
Confidence 0000 000
Q ss_pred HHHHHHHHHHHHHHHHHccCCcccccccccccchhHHhcchhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 994 AGYKTATLLFNKMHYCIFRAPMSFFDATPSGRIINRASTDQSAVDLSIPALIGSFAFSIIRVLGVIGVMSLVAWQVFIVF 1073 (1495)
Q Consensus 994 ~~~~~s~~l~~~ll~~ll~ap~~ffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 1073 (1495)
T Consensus 244 -------------------------------------------------------------------------------- 243 (490)
T PRK10938 244 -------------------------------------------------------------------------------- 243 (490)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcchHHHHhhccHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 000452 1074 IPVIATCIWYQQYYISSARELSRLVGVCKAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGYSRPTFHVAAAMEWL 1153 (1495)
Q Consensus 1074 ip~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl 1153 (1495)
T Consensus 244 -------------------------------------------------------------------------------- 243 (490)
T PRK10938 244 -------------------------------------------------------------------------------- 243 (490)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCCCCCcc
Q 000452 1154 GFRLDMLSNITFAFSLVFLISIPKGFIDPAIAGLAVTYGLTLNNLQAMLIWLACQMENKIISVERIFQYTCIPSEPPLEI 1233 (1495)
Q Consensus 1154 ~~rl~~l~~~~~~~~~~~~~~~~~~~~~~~~~gl~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~E~~~~~ 1233 (1495)
. ..++..
T Consensus 244 -----------------------~------------------------------------------------~~~~~~-- 250 (490)
T PRK10938 244 -----------------------E------------------------------------------------PDEPSA-- 250 (490)
T ss_pred -----------------------c------------------------------------------------cccccc--
Confidence 0 000000
Q ss_pred ccCCCCCCCCCcceEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccC-CccEEEEcCEe
Q 000452 1234 EESRPNHSWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEP-AAGQILIDGID 1312 (1495)
Q Consensus 1234 ~~~~~~~~wp~~g~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep-~~G~I~IDG~d 1312 (1495)
+. ..+ +....|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+.+| ++|+|.+||.+
T Consensus 251 ~~-~~~---~~~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~ 324 (490)
T PRK10938 251 RH-ALP---ANEPRIVLNNGVVSYND--RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRR 324 (490)
T ss_pred cc-ccC---CCCceEEEeceEEEECC--eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEeccc
Confidence 00 000 01225999999999964 3499999999999999999999999999999999998876 69999999987
Q ss_pred CCC-CCHHHHhcccEEEcccCcCCC---CcHHHhcCC-C-------CCCC---HHHHHHHHHHcCCcH-HHHhccCCccc
Q 000452 1313 ISL-IGLHDLRTRLSIIPQDPVMFE---GTVRSNVDP-L-------EEYT---DEQIWEALDKCQLGD-EVRKKEGKLDS 1376 (1495)
Q Consensus 1313 I~~-i~l~~LR~~isiIpQdp~LF~---GTIR~NLdp-~-------~~~s---d~ei~~aL~~~~L~~-~v~~lp~gLdt 1376 (1495)
+.. ......|++++|+||++.++. -|+++++.+ . .... ++++.++++.+++.+ .. |.
T Consensus 325 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~ 397 (490)
T PRK10938 325 RGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTA-------DA 397 (490)
T ss_pred CCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhc-------cC
Confidence 632 234457889999999987642 477777642 1 1111 245778888888764 32 22
Q ss_pred ccccCCCCCCchHHHHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcC-C-cEEEEEecCchhhhc--cCEE
Q 000452 1377 KVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFS-D-CTVITIAHRITSVID--SDMV 1452 (1495)
Q Consensus 1377 ~v~e~G~nLS~GQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~-~-~TVI~IAHRl~ti~~--~DrI 1452 (1495)
+ ...||||||||++|||||+++|+||||||||++||+++...+.+.|++..+ + +|||+|+|+++.+.. ||+|
T Consensus 398 ~----~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v 473 (490)
T PRK10938 398 P----FHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRL 473 (490)
T ss_pred c----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeE
Confidence 2 246999999999999999999999999999999999999999999998753 3 479999999999974 7999
Q ss_pred EEEeCcEEEEecC
Q 000452 1453 LLLSHGLIEEYDS 1465 (1495)
Q Consensus 1453 lVL~~G~ivE~gs 1465 (1495)
++|++|++++.-+
T Consensus 474 ~~l~~G~i~~~~~ 486 (490)
T PRK10938 474 EFVPDGDIYRYVQ 486 (490)
T ss_pred EEecCCceEEeec
Confidence 9999999988643
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-64 Score=631.74 Aligned_cols=432 Identities=23% Similarity=0.354 Sum_probs=329.7
Q ss_pred EeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe--------------EEEE
Q 000452 621 ADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT--------------KAYV 686 (1495)
Q Consensus 621 ~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~--------------~ayv 686 (1495)
+|++++|+ ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|+
T Consensus 2 ~nl~~~~~---~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 78 (491)
T PRK10982 2 SNISKSFP---GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMV 78 (491)
T ss_pred CceEEEeC---CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEE
Confidence 57888885 357999999999999999999999999999999999999999999999873 6899
Q ss_pred ccCCccc-CccHHHHHhcCCC------CCHH----HHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHHHH
Q 000452 687 AQSPWIQ-SGKIEDNILFGKE------MDRE----RYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIAR 755 (1495)
Q Consensus 687 ~Q~~~l~-~~ti~enI~fg~~------~~~~----~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LAR 755 (1495)
+|++.++ +.|++||+.++.. .+.+ +.+++++.+++. .....+..+|||||||||+|||
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgGq~qrv~lA~ 147 (491)
T PRK10982 79 HQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDID-----------IDPRAKVATLSVSQMQMIEIAK 147 (491)
T ss_pred ecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCC-----------CCccCchhhCCHHHHHHHHHHH
Confidence 9998765 5699999987642 1222 222333333322 1234677899999999999999
Q ss_pred HhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEecCCCcccc-CCEEEEEeCCEEEEecChHHHHhcCCc
Q 000452 756 ALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYTDVINSGTD 834 (1495)
Q Consensus 756 Al~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~ 834 (1495)
|++.+|+++||||||++||+.+.+.+++.+.....+|+|+|++||+++++.. ||++++|++|+++..|+.+++..
T Consensus 148 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~---- 223 (491)
T PRK10982 148 AFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLTM---- 223 (491)
T ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCCH----
Confidence 9999999999999999999999998876433333458999999999999865 99999999999987665322100
Q ss_pred hhHHHHHHHhhhcccccccCCCCCCCCCCCCCCCCCCcccccccccccccccccccccccchhhhhhHHHHHhhcCchHH
Q 000452 835 FMELVDAHKQALSTLDSIEGRPLSEKGSANGENDGTSATDGVVKEVENKEVQNDREDKVAEPQRQLVQEEEREKGKVEFS 914 (1495)
Q Consensus 835 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~ 914 (1495)
....
T Consensus 224 ---------------------------------------------------------------~~~~------------- 227 (491)
T PRK10982 224 ---------------------------------------------------------------DKII------------- 227 (491)
T ss_pred ---------------------------------------------------------------HHHH-------------
Confidence 0000
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhcccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 915 VYWKYITAAYGGVLVPFILLAQTLFQILQIASNYWIAWATPASKDIKPRVTGSMLLIVFVALAFGSSFCILARSTLLATA 994 (1495)
Q Consensus 915 ~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~ 994 (1495)
... .. .
T Consensus 228 ------~~~------------------------------~~-----~--------------------------------- 233 (491)
T PRK10982 228 ------AMM------------------------------VG-----R--------------------------------- 233 (491)
T ss_pred ------HHH------------------------------hC-----C---------------------------------
Confidence 000 00 0
Q ss_pred HHHHHHHHHHHHHHHHccCCcccccccccccchhHHhcchhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 995 GYKTATLLFNKMHYCIFRAPMSFFDATPSGRIINRASTDQSAVDLSIPALIGSFAFSIIRVLGVIGVMSLVAWQVFIVFI 1074 (1495)
Q Consensus 995 ~~~~s~~l~~~ll~~ll~ap~~ffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~i 1074 (1495)
++
T Consensus 234 -------------------~~----------------------------------------------------------- 235 (491)
T PRK10982 234 -------------------SL----------------------------------------------------------- 235 (491)
T ss_pred -------------------Cc-----------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcchHHHHhhccHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 000452 1075 PVIATCIWYQQYYISSARELSRLVGVCKAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGYSRPTFHVAAAMEWLG 1154 (1495)
Q Consensus 1075 p~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~ 1154 (1495)
T Consensus 236 -------------------------------------------------------------------------------- 235 (491)
T PRK10982 236 -------------------------------------------------------------------------------- 235 (491)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCCCCCccc
Q 000452 1155 FRLDMLSNITFAFSLVFLISIPKGFIDPAIAGLAVTYGLTLNNLQAMLIWLACQMENKIISVERIFQYTCIPSEPPLEIE 1234 (1495)
Q Consensus 1155 ~rl~~l~~~~~~~~~~~~~~~~~~~~~~~~~gl~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~E~~~~~~ 1234 (1495)
.+ ..+.++
T Consensus 236 --------------------------------------------------------------~~-----~~~~~~----- 243 (491)
T PRK10982 236 --------------------------------------------------------------TQ-----RFPDKE----- 243 (491)
T ss_pred --------------------------------------------------------------cc-----cccccc-----
Confidence 00 000000
Q ss_pred cCCCCCCCCCcceEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCC
Q 000452 1235 ESRPNHSWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDIS 1314 (1495)
Q Consensus 1235 ~~~~~~~wp~~g~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~ 1314 (1495)
.+ |....|+++|++++| +.+|+|+||+|++||++||+|++|||||||+++|+|+.+|++|+|.+||.++.
T Consensus 244 --~~----~~~~~i~~~~l~~~~----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~ 313 (491)
T PRK10982 244 --NK----PGEVILEVRNLTSLR----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKIN 313 (491)
T ss_pred --CC----CCCcEEEEeCccccc----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECC
Confidence 00 111259999999985 24999999999999999999999999999999999999999999999999998
Q ss_pred CCCHH-HHhcccEEEcccCc---CCC-CcHHHh-----cCCC----CCCC----HHHHHHHHHHcCCcHHHHhccCCccc
Q 000452 1315 LIGLH-DLRTRLSIIPQDPV---MFE-GTVRSN-----VDPL----EEYT----DEQIWEALDKCQLGDEVRKKEGKLDS 1376 (1495)
Q Consensus 1315 ~i~l~-~LR~~isiIpQdp~---LF~-GTIR~N-----Ldp~----~~~s----d~ei~~aL~~~~L~~~v~~lp~gLdt 1376 (1495)
..+.. .+|+.++|+||++. +|. .|+++| +... +..+ ++++.++++..++.+ +.+|.
T Consensus 314 ~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~ 387 (491)
T PRK10982 314 NHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKT------PGHRT 387 (491)
T ss_pred CCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccC------CCccc
Confidence 77654 35778999999963 565 477666 3211 1112 223455555555521 11233
Q ss_pred ccccCCCCCCchHHHHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-cCEEEE
Q 000452 1377 KVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHF-SDCTVITIAHRITSVID-SDMVLL 1454 (1495)
Q Consensus 1377 ~v~e~G~nLS~GQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f-~~~TVI~IAHRl~ti~~-~DrIlV 1454 (1495)
+ ...||||||||++||||++++|+||||||||++||+.+...+.+.|++.. .+.|||+|||+++.+.. ||||++
T Consensus 388 ~----~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~ 463 (491)
T PRK10982 388 Q----IGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILV 463 (491)
T ss_pred c----cccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEE
Confidence 3 35799999999999999999999999999999999999999999997753 47999999999999865 999999
Q ss_pred EeCcEEEEecChhHHh
Q 000452 1455 LSHGLIEEYDSPRKLL 1470 (1495)
Q Consensus 1455 L~~G~ivE~gsp~~Ll 1470 (1495)
|++|+++..++++++.
T Consensus 464 l~~g~i~~~~~~~~~~ 479 (491)
T PRK10982 464 MSNGLVAGIVDTKTTT 479 (491)
T ss_pred EECCEEEEEEccccCC
Confidence 9999999888775443
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-62 Score=616.83 Aligned_cols=472 Identities=18% Similarity=0.213 Sum_probs=368.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccccccccccchhHHhcchhHHHhhhHHHHHHHHHHHHHHH
Q 000452 977 AFGSSFCILARSTLLATAGYKTATLLFNKMHYCIFRAPMSFFDATPSGRIINRASTDQSAVDLSIPALIGSFAFSIIRVL 1056 (1495)
Q Consensus 977 ~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~ll~ap~~ffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~~ 1056 (1495)
.++..++.+++.++....+.+...+++.++++++++.|++||++.++|++++|+++|++.+...+. .+..++..++.++
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i 136 (547)
T PRK10522 58 LLLLMAVTLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFV-RLPELVQGIILTL 136 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHH
Confidence 333345666778888889999999999999999999999999999999999999999999987654 4667788888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcchHHHHhhccH---HHHHHHHH
Q 000452 1057 GVIGVMSLVAWQVFIVFIPVIATCIWYQQYYISSARELSRLVGVCKAPLIQHFAETVSGSTTIRSFDQE---SRFIDTNM 1133 (1495)
Q Consensus 1057 ~~~~~~~~~~~~~~~v~ip~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e---~~f~~~~~ 1133 (1495)
+.++++++++|+++++++..+++.+++..++.+..+...+......+.+.+++.|.++|+.+|+ ++.+ +.+.+++.
T Consensus 137 ~~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~ 215 (547)
T PRK10522 137 GSAAYLAWLSPKMLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYE 215 (547)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHh
Confidence 8999999999999988777766666666666666666666667788899999999999999996 4433 45666776
Q ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 1134 ELMDGYSRPTFHVAAAMEWLGFRLDMLSNITF-AFSLVFLISIP-KGFIDPAIAGLAVTYGLTLNNLQAMLIWLACQMEN 1211 (1495)
Q Consensus 1134 ~~~d~~~~~~~~~~~~~~wl~~rl~~l~~~~~-~~~~~~~~~~~-~~~~~~~~~gl~l~~~~~l~~~~~~~~~~~~~le~ 1211 (1495)
+..+...+....... +......+..+.. ...+++++... .+..+.+.++....+.+.+...+..+...+.++..
T Consensus 216 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~ 291 (547)
T PRK10522 216 PDAQEYRHHIIRADT----FHLSAVNWSNIMMLGAIGLVFYMANSLGWADTNVAATYSLTLLFLRTPLLSAVGALPTLLS 291 (547)
T ss_pred HHHHHHHhhhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666655544333221 1111111111111 11111111110 11123333344444444555677788888889999
Q ss_pred HhhHHHHHHHHhcCCCCCCCccccCCCCCCCCCcceEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHH
Q 000452 1212 KIISVERIFQYTCIPSEPPLEIEESRPNHSWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTL 1291 (1495)
Q Consensus 1212 ~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTL 1291 (1495)
...+.+|+.++.+.|.|++. ++..+. |..+.|+++||+|+|+.+ +++|+|+||+|+|||++||||+||||||||
T Consensus 292 ~~~a~~ri~~l~~~~~~~~~--~~~~~~---~~~~~i~~~~v~f~y~~~-~~~l~~i~~~i~~G~~~aivG~sGsGKSTL 365 (547)
T PRK10522 292 AQVAFNKLNKLALAPYKAEF--PRPQAF---PDWQTLELRNVTFAYQDN-GFSVGPINLTIKRGELLFLIGGNGSGKSTL 365 (547)
T ss_pred HHHHHHHHHHHhcccccccc--cccccc---CcCceEEEEEEEEEeCCC-CeEEecceEEEcCCCEEEEECCCCCCHHHH
Confidence 99999999999765543221 111111 223679999999999743 469999999999999999999999999999
Q ss_pred HHHHhccccCCccEEEEcCEeCCCCCHHHHhcccEEEcccCcCCCCcHHHhcCCCCCCCHHHHHHHHHHcCCcHHHHhcc
Q 000452 1292 IQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKE 1371 (1495)
Q Consensus 1292 l~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~isiIpQdp~LF~GTIR~NLdp~~~~sd~ei~~aL~~~~L~~~v~~lp 1371 (1495)
+++|+|+++|++|+|.+||+|+++++.+++|+++++|||||.+|+||+++| ..+.+|++++++++++++.+.+.. +
T Consensus 366 ~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~~~~~~~~~~~~~~~~~l~~~~~~-~ 441 (547)
T PRK10522 366 AMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---GKPANPALVEKWLERLKMAHKLEL-E 441 (547)
T ss_pred HHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---cCchHHHHHHHHHHHcCCchhhhc-c
Confidence 999999999999999999999999999999999999999999999999999 246789999999999999877653 4
Q ss_pred CCcccccccCCCCCCchHHHHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCchhhhcc
Q 000452 1372 GKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHF--SDCTVITIAHRITSVIDS 1449 (1495)
Q Consensus 1372 ~gLdt~v~e~G~nLS~GQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f--~~~TVI~IAHRl~ti~~~ 1449 (1495)
+|. .+|.+||||||||++||||++++|+|||||||||+||+++++.|.+.+++.. +++|+|+||||++++..|
T Consensus 442 ~~~-----~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~ 516 (547)
T PRK10522 442 DGR-----ISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHA 516 (547)
T ss_pred ccC-----CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhC
Confidence 442 2588999999999999999999999999999999999999999999998665 489999999999999999
Q ss_pred CEEEEEeCcEEEEe-cChhHH
Q 000452 1450 DMVLLLSHGLIEEY-DSPRKL 1469 (1495)
Q Consensus 1450 DrIlVL~~G~ivE~-gsp~~L 1469 (1495)
|+|++|++|+++|. |++.+-
T Consensus 517 d~i~~l~~G~i~e~~~~~~~~ 537 (547)
T PRK10522 517 DRLLEMRNGQLSELTGEERDA 537 (547)
T ss_pred CEEEEEECCEEEEecCCchhh
Confidence 99999999999998 444433
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-60 Score=608.10 Aligned_cols=540 Identities=19% Similarity=0.254 Sum_probs=422.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 295 MFRSVWKDVLLTALVAIVCTLATYVGPYLIDTLVQYLSGKRDFENEGYALVSAFCVAKLVECLCQRFFVFRLEQLGIRLR 374 (1495)
Q Consensus 295 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~g~rir 374 (1495)
+++.+++.+++..++.++..++..+.|++++.++|.+...+. . ..+++.+++..++..+......+...++..+++
T Consensus 13 ~l~~~k~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (585)
T TIGR01192 13 YLNVHKNRVLLIVIANITLAAITIAEPILFGRIIDAISSKSD--V--LPTLALWAGFGVFNTIAYVLVAREADRLAHGRR 88 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888999999999999999999999997754321 1 111111222233344444445566778888899
Q ss_pred HHHHHHHHHHHhcCCcchhcCCCHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 375 AALIAMIYNKGLKLSSQAKQGNTSGEIINFMTVDAERVAELSW-YIHDPWLFLFEVALSFLILYKSLGIASVAAFFGTVI 453 (1495)
Q Consensus 375 ~~L~~~iy~K~L~ls~~~~~~~~~G~i~nl~s~D~~~i~~~~~-~~~~~w~~pl~i~~~~~lL~~~lG~~~l~gl~~~i~ 453 (1495)
..+...+|+|.++++....+++++|+++++++.|++.+.+++. .+..+....+.+++++++++..-...+++.++++.+
T Consensus 89 ~~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~ 168 (585)
T TIGR01192 89 ATLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIVLMVLGIL 168 (585)
T ss_pred HHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999987653 333444455555544444443333333444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 454 FMLVNVPLSTVQEKFQNELMKSKDERMKATSEILRNMRILKLQGWELKFLSKTIDLRKSESGWLKRCLYTSSITSFVFWC 533 (1495)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~m~~~D~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~~~~ 533 (1495)
...+...+.+..++.+++..+..++..+.+.|.++|+++||.++.|+.+.+++.+..++-.+...+..........+...
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (585)
T TIGR01192 169 YILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLNRM 248 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666777777788888888889999999999999999999999888777665443222222222211211111111
Q ss_pred HH--HHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCCC
Q 000452 534 AP--TFVSVITFGTCILLKVPLESGKVLSAIATFRLLQILIYKLPAIISMTIQTKVSLQRIASFFCLDELQPDLVEKQPR 611 (1495)
Q Consensus 534 ~p--~~v~~~~f~~~~~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~~~~~~~ 611 (1495)
.. ..+.++.++.+.+.++.++.|.+++++.++..+..|+..+...+..+.+++.+++|+.++++.++..++.....+.
T Consensus 249 ~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~ 328 (585)
T TIGR01192 249 ASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPADAPEL 328 (585)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCccCCCC
Confidence 11 1233456677778888999999999999999999999999999999999999999999998765332111110011
Q ss_pred CCCcccEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe---------
Q 000452 612 GSSETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT--------- 682 (1495)
Q Consensus 612 ~~~~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~--------- 682 (1495)
......++++|++|+|+. ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 329 ~~~~~~i~~~~v~~~y~~--~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~ 406 (585)
T TIGR01192 329 PNVKGAVEFRHITFEFAN--SSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRES 406 (585)
T ss_pred CCCCCeEEEEEEEEECCC--CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHH
Confidence 112246999999999963 246899999999999999999999999999999999999999999999883
Q ss_pred ----EEEEccCCcccCccHHHHHhcCCC-CCHHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHHHHHh
Q 000452 683 ----KAYVAQSPWIQSGKIEDNILFGKE-MDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARAL 757 (1495)
Q Consensus 683 ----~ayv~Q~~~l~~~ti~enI~fg~~-~~~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl 757 (1495)
++||||+|+++++|++|||.++.+ .++++..++++.+++++++..+|+|.+|.+|++|.+||||||||++||||+
T Consensus 407 ~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARal 486 (585)
T TIGR01192 407 LRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAI 486 (585)
T ss_pred HHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999999864 577788888999999999999999999999999999999999999999999
Q ss_pred ccCCCEeEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEecCCCccccCCEEEEEeCCEEEEecChHHHHhcCCchhH
Q 000452 758 YQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVINSGTDFME 837 (1495)
Q Consensus 758 ~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 837 (1495)
+++|+++|||||||+||+++++.+.+ .+....+++|+|+|||+++.++.||+|++|++|++++.|+++++.++++.|.+
T Consensus 487 l~~p~ililDEpts~LD~~~~~~i~~-~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~~ 565 (585)
T TIGR01192 487 LKNAPILVLDEATSALDVETEARVKN-AIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQKDGRFYK 565 (585)
T ss_pred hcCCCEEEEECCccCCCHHHHHHHHH-HHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHHCCChHHH
Confidence 99999999999999999999888865 45555678999999999999988999999999999999999999988888887
Q ss_pred HHHH
Q 000452 838 LVDA 841 (1495)
Q Consensus 838 l~~~ 841 (1495)
+...
T Consensus 566 l~~~ 569 (585)
T TIGR01192 566 LLRR 569 (585)
T ss_pred HHHh
Confidence 7654
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-61 Score=610.76 Aligned_cols=539 Identities=24% Similarity=0.337 Sum_probs=423.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 293 KAMFRSVWKDVLLTALVAIVCTLATYVGPYLIDTLVQYLSGKRDFENEGYALVSAFCVAKLVECLCQRFFVFRLEQLGIR 372 (1495)
Q Consensus 293 ~al~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~g~r 372 (1495)
+.+++ ++ .+....++.++..++....|+++..+++.+... ......+...+++..++..++.....+...+.+.+
T Consensus 8 ~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 82 (567)
T COG1132 8 LKYLK-YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALLAD---LGELLELLLLLLLLALLGGVLRALQSYLGSRLGQK 82 (567)
T ss_pred HHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444 67 788888889999999999999999999987611 11122222223333334445555555666667789
Q ss_pred HHHHHHHHHHHHHhcCCcchhcCCCHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 000452 373 LRAALIAMIYNKGLKLSSQAKQGNTSGEIINFMTVDAERVAELSWYIHDPWL-FLFEVALSFLILYKSLGI-ASVAAFFG 450 (1495)
Q Consensus 373 ir~~L~~~iy~K~L~ls~~~~~~~~~G~i~nl~s~D~~~i~~~~~~~~~~w~-~pl~i~~~~~lL~~~lG~-~~l~gl~~ 450 (1495)
+...+...+|+|.++++....+++.+|++++++++|++.+.+.......+.. .++.++..+++++ .+.| .+++.+++
T Consensus 83 ~~~~lr~~~~~~l~~~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~l~~~~~ 161 (567)
T COG1132 83 IVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLF-SLSWRLALILLLI 161 (567)
T ss_pred HHHHHHHHHHHHHHhCCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988766533333 3343444444443 3333 23333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 451 TVIFMLVNVPLSTVQEKFQNELMKSKDERMKATSEILRNMRILKLQGWELKFLSKTIDLRKSESGWLKRCLYTSSITSFV 530 (1495)
Q Consensus 451 ~i~~~~~~~~~~~~~~~~~~~~m~~~D~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~ 530 (1495)
..++..+...+.++.++..++..+..++..+.+.|.++|++++|.++.|+...++..+..++..+...+..........+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (567)
T COG1132 162 LPLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPL 241 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555678888888888999999999999999999999999876666554443333322222222222211
Q ss_pred -HHH-HHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccC
Q 000452 531 -FWC-APTFVSVITFGTCILLKVPLESGKVLSAIATFRLLQILIYKLPAIISMTIQTKVSLQRIASFFCLDELQPDLVEK 608 (1495)
Q Consensus 531 -~~~-~p~~v~~~~f~~~~~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~~~~ 608 (1495)
... .-..+.++.++.+.+..+.++.|.+.+++.++..+..|+..+...+..+.++..|.+|+.++++.++...+....
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~ 321 (567)
T COG1132 242 MLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDP 321 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCC
Confidence 111 112233444556666777899999999999999999999999999999999999999999999985532221111
Q ss_pred CCCCCCcccEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe------
Q 000452 609 QPRGSSETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------ 682 (1495)
Q Consensus 609 ~~~~~~~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~------ 682 (1495)
.......|+++|++|+|+. ++++|+|+||++++||++|||||+|||||||+++|+|+++|++|+|.+||.
T Consensus 322 --~~~~~~~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~ 397 (567)
T COG1132 322 --LKDTIGSIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDIS 397 (567)
T ss_pred --CCCCCCeEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcC
Confidence 1123346999999999973 468999999999999999999999999999999999999999999999883
Q ss_pred -------EEEEccCCcccCccHHHHHhcCCC-CCHHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHHH
Q 000452 683 -------KAYVAQSPWIQSGKIEDNILFGKE-MDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIA 754 (1495)
Q Consensus 683 -------~ayv~Q~~~l~~~ti~enI~fg~~-~~~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LA 754 (1495)
++||||+|++|++||+|||.+|++ .++++..++++.++++++++.+|+|.+|.+||+|.+||||||||++||
T Consensus 398 ~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiA 477 (567)
T COG1132 398 LDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIA 477 (567)
T ss_pred HHHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHH
Confidence 599999999999999999999987 688999999999999999999999999999999999999999999999
Q ss_pred HHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEecCCCccccCCEEEEEeCCEEEEecChHHHHhcCCc
Q 000452 755 RALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVINSGTD 834 (1495)
Q Consensus 755 RAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~ 834 (1495)
||+++||+|++||||||+||+.+++.|.+. +....++||+|+|+|+++.+..||+|++|++|+|++.|+++|+++.++.
T Consensus 478 Rall~~~~ILILDEaTSalD~~tE~~I~~~-l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~~g~ 556 (567)
T COG1132 478 RALLRNPPILILDEATSALDTETEALIQDA-LKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAKGGL 556 (567)
T ss_pred HHHhcCCCEEEEeccccccCHHhHHHHHHH-HHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHcCCH
Confidence 999999999999999999999999988765 4455578999999999999999999999999999999999999999888
Q ss_pred hhHHHHHH
Q 000452 835 FMELVDAH 842 (1495)
Q Consensus 835 ~~~l~~~~ 842 (1495)
|.++...+
T Consensus 557 y~~l~~~~ 564 (567)
T COG1132 557 YARLYQAQ 564 (567)
T ss_pred HHHHHHHh
Confidence 99887654
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-63 Score=624.26 Aligned_cols=481 Identities=22% Similarity=0.313 Sum_probs=335.6
Q ss_pred cEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcC--eEEEEccCCcccC
Q 000452 617 AIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG--TKAYVAQSPWIQS 694 (1495)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g--~~ayv~Q~~~l~~ 694 (1495)
.++++|++++|+. ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ .++||+|+|++++
T Consensus 6 ~l~i~~l~~~y~~--~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~ 83 (556)
T PRK11819 6 IYTMNRVSKVVPP--KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLDP 83 (556)
T ss_pred EEEEeeEEEEeCC--CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCC
Confidence 6899999999952 35799999999999999999999999999999999999999999999864 6899999998875
Q ss_pred -ccHHHHHhcCCC-CC----------------HH-------HHHHH---HHHh-------CcHHHHhhcCCCCcccccCC
Q 000452 695 -GKIEDNILFGKE-MD----------------RE-------RYNAV---LDAC-------SLEKDLEILSFGDQTVVGER 739 (1495)
Q Consensus 695 -~ti~enI~fg~~-~~----------------~~-------~~~~v---l~~~-------~l~~dl~~l~~gd~t~ig~~ 739 (1495)
.|++||+.++.. +. .+ ++.++ ++.+ .+..-++.+... ....+
T Consensus 84 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~---~~~~~ 160 (556)
T PRK11819 84 EKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCP---PWDAK 160 (556)
T ss_pred CCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCC---cccCc
Confidence 499999987631 00 00 00000 1100 011122222221 13567
Q ss_pred CCccchHHHHHHHHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEecCCCcccc-CCEEEEEeCCE
Q 000452 740 GINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPA-ADLVLVIKDGK 818 (1495)
Q Consensus 740 g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~~-~d~i~~l~~G~ 818 (1495)
..+|||||||||+||||++.+|+++|||||||+||+...+++.+ ++... +.|+|+|||+++++.. ||+|++|++|+
T Consensus 161 ~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~-~L~~~--~~tviiisHd~~~~~~~~d~i~~l~~g~ 237 (556)
T PRK11819 161 VTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQ-FLHDY--PGTVVAVTHDRYFLDNVAGWILELDRGR 237 (556)
T ss_pred hhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHH-HHHhC--CCeEEEEeCCHHHHHhhcCeEEEEeCCE
Confidence 78999999999999999999999999999999999999888764 45443 3599999999999876 99999999999
Q ss_pred EE-EecChHHHHhcCCchhHHHHHHHhhhcccccccCCCCCCCCCCCCCCCCCCcccccccccccccccccccccccchh
Q 000452 819 IT-QAGKYTDVINSGTDFMELVDAHKQALSTLDSIEGRPLSEKGSANGENDGTSATDGVVKEVENKEVQNDREDKVAEPQ 897 (1495)
Q Consensus 819 i~-~~g~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 897 (1495)
++ +.|+++++.+... ...+.
T Consensus 238 i~~~~g~~~~~~~~~~-------~~~~~---------------------------------------------------- 258 (556)
T PRK11819 238 GIPWEGNYSSWLEQKA-------KRLAQ---------------------------------------------------- 258 (556)
T ss_pred EEEecCCHHHHHHHHH-------HHHHH----------------------------------------------------
Confidence 86 7898887643210 00000
Q ss_pred hhhhHHHHHhhcCchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhcccCCCCCCCcchhHHHHHHHHHH
Q 000452 898 RQLVQEEEREKGKVEFSVYWKYITAAYGGVLVPFILLAQTLFQILQIASNYWIAWATPASKDIKPRVTGSMLLIVFVALA 977 (1495)
Q Consensus 898 ~~~~~~e~~~~g~v~~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~y~~l~ 977 (1495)
..++.++.+ ..+.... -|+..
T Consensus 259 --~~~~~~~~~---------~~~~~~~-----------------------~~~~~------------------------- 279 (556)
T PRK11819 259 --EEKQEAARQ---------KALKREL-----------------------EWVRQ------------------------- 279 (556)
T ss_pred --HHHHHHHHH---------HHHHHHH-----------------------HHHHH-------------------------
Confidence 000000000 0000000 00000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccccccccccchhHHhcchhHHHhhhHHHHHHHHHHHHHHHH
Q 000452 978 FGSSFCILARSTLLATAGYKTATLLFNKMHYCIFRAPMSFFDATPSGRIINRASTDQSAVDLSIPALIGSFAFSIIRVLG 1057 (1495)
Q Consensus 978 ~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~ll~ap~~ffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~~~ 1057 (1495)
.+ .
T Consensus 280 -----------------------------------~~--------~---------------------------------- 282 (556)
T PRK11819 280 -----------------------------------SP--------K---------------------------------- 282 (556)
T ss_pred -----------------------------------hh--------h----------------------------------
Confidence 00 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcchHHHHhhccHHHHHHHHHHHHH
Q 000452 1058 VIGVMSLVAWQVFIVFIPVIATCIWYQQYYISSARELSRLVGVCKAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMD 1137 (1495)
Q Consensus 1058 ~~~~~~~~~~~~~~v~ip~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d 1137 (1495)
.+.. .
T Consensus 283 ---------------------------------~~~~-----~------------------------------------- 287 (556)
T PRK11819 283 ---------------------------------ARQA-----K------------------------------------- 287 (556)
T ss_pred ---------------------------------hhHH-----H-------------------------------------
Confidence 0000 0
Q ss_pred HhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 000452 1138 GYSRPTFHVAAAMEWLGFRLDMLSNITFAFSLVFLISIPKGFIDPAIAGLAVTYGLTLNNLQAMLIWLACQMENKIISVE 1217 (1495)
Q Consensus 1138 ~~~~~~~~~~~~~~wl~~rl~~l~~~~~~~~~~~~~~~~~~~~~~~~~gl~l~~~~~l~~~~~~~~~~~~~le~~~~sve 1217 (1495)
.+......+
T Consensus 288 -----------------------------------------------------------------------~~~~~~~~~ 296 (556)
T PRK11819 288 -----------------------------------------------------------------------SKARLARYE 296 (556)
T ss_pred -----------------------------------------------------------------------HHHHHHHHH
Confidence 000000000
Q ss_pred HHHHHhcCCCCCCCccccCCCCCCCCCcceEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhc
Q 000452 1218 RIFQYTCIPSEPPLEIEESRPNHSWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFR 1297 (1495)
Q Consensus 1218 Ri~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~r 1297 (1495)
|..+. .+.+.+.......++...+....|+++|++++|.. ..+|+||||+|++||++||+|+||||||||+++|.|
T Consensus 297 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G 372 (556)
T PRK11819 297 ELLSE--EYQKRNETNEIFIPPGPRLGDKVIEAENLSKSFGD--RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITG 372 (556)
T ss_pred Hhhcc--cccccCCCceeecCCCCCCCCeEEEEEeEEEEECC--eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 11000 00000000000001111112336999999999964 359999999999999999999999999999999999
Q ss_pred cccCCccEEEEcCEeCCCCCHHHHhcccEEEcccC-cCCCC-cHHHhcCCCC---C--CCHHHHHHHHHHcCCcHHHHhc
Q 000452 1298 IVEPAAGQILIDGIDISLIGLHDLRTRLSIIPQDP-VMFEG-TVRSNVDPLE---E--YTDEQIWEALDKCQLGDEVRKK 1370 (1495)
Q Consensus 1298 l~ep~~G~I~IDG~dI~~i~l~~LR~~isiIpQdp-~LF~G-TIR~NLdp~~---~--~sd~ei~~aL~~~~L~~~v~~l 1370 (1495)
+.+|++|+|.+++ + .+++|+||++ .++.. |+++|+.... . ..+++..++++..++.+..
T Consensus 373 ~~~p~~G~i~~~~-~----------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--- 438 (556)
T PRK11819 373 QEQPDSGTIKIGE-T----------VKLAYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGD--- 438 (556)
T ss_pred CCCCCCeEEEECC-c----------eEEEEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhH---
Confidence 9999999999964 2 1699999997 56654 9999986321 1 1234456677777764211
Q ss_pred cCCcccccccCCCCCCchHHHHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-c
Q 000452 1371 EGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVID-S 1449 (1495)
Q Consensus 1371 p~gLdt~v~e~G~nLS~GQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~~-~ 1449 (1495)
++.. ...||||||||++||||++.+|++|||||||++||+.+...+.+.|++. + .|||+|||+++.+.. |
T Consensus 439 ---~~~~----~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~-~tvi~vtHd~~~~~~~~ 509 (556)
T PRK11819 439 ---QQKK----VGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEF-P-GCAVVISHDRWFLDRIA 509 (556)
T ss_pred ---hcCc----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC-C-CeEEEEECCHHHHHHhC
Confidence 1222 3469999999999999999999999999999999999999999999986 3 489999999998875 9
Q ss_pred CEEEEEeC-cEEEE-ecChhHHhhcC
Q 000452 1450 DMVLLLSH-GLIEE-YDSPRKLLENK 1473 (1495)
Q Consensus 1450 DrIlVL~~-G~ivE-~gsp~~Ll~~~ 1473 (1495)
|+|++|++ |++.+ .|+++++++++
T Consensus 510 d~i~~l~~~g~~~~~~g~~~~~~~~~ 535 (556)
T PRK11819 510 THILAFEGDSQVEWFEGNFQEYEEDK 535 (556)
T ss_pred CEEEEEECCCeEEEecCCHHHHHHHH
Confidence 99999986 88875 67788777653
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-60 Score=604.31 Aligned_cols=511 Identities=20% Similarity=0.250 Sum_probs=399.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 299 VWKDVLLTALVAIVCTLATYVGPYLIDTLVQYLS-GKRDFENEGYALVSAFCVAKLVECLCQRFFVFRLEQLGIRLRAAL 377 (1495)
Q Consensus 299 ~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~-~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~g~rir~~L 377 (1495)
+|+.++..+++.++..++..+.|++++.++|.+. +... ....+.+++.+++..++..++.....+...+++.++...+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 79 (529)
T TIGR02857 1 ARRALALLGLLGALGALLIIAQAWLLARVIDGLISAGEP-LAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQL 79 (529)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777888899999999999999999999873 3221 1222334444455556666777777778888999999999
Q ss_pred HHHHHHHHhcCCcchhcCCCHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 378 IAMIYNKGLKLSSQAKQGNTSGEIINFMTVDAERVAELSW-YIHDPWLFLFEVALSFLILYKSLGIASVAAFFGTVIFML 456 (1495)
Q Consensus 378 ~~~iy~K~L~ls~~~~~~~~~G~i~nl~s~D~~~i~~~~~-~~~~~w~~pl~i~~~~~lL~~~lG~~~l~gl~~~i~~~~ 456 (1495)
...+|+|.++++....+++++|+++|++++|++.+.+++. .+..+....+..++++++++..-.+.+++.++.+.+...
T Consensus 80 r~~l~~~l~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~ 159 (529)
T TIGR02857 80 RERLLAAVAALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPI 159 (529)
T ss_pred HHHHHHHHHhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998654 355556555555555554443322223333333323333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 457 VNVPLSTVQEKFQNELMKSKDERMKATSEILRNMRILKLQGWELKFLSKTIDLRKSESGWLKRCLYTSSITSFVFWCAPT 536 (1495)
Q Consensus 457 ~~~~~~~~~~~~~~~~m~~~D~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~~~~~p~ 536 (1495)
+...+.+..++..++.++..+++.+.+.|.++|+++||.|++|+.+.+++.+.-++..+...+..........+......
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (529)
T TIGR02857 160 FMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFAT 239 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666777788888999999999999999999999999999988887665433333222222222222221111111
Q ss_pred HH--HHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCCCCCC
Q 000452 537 FV--SVITFGTCILLKVPLESGKVLSAIATFRLLQILIYKLPAIISMTIQTKVSLQRIASFFCLDELQPDLVEKQPRGSS 614 (1495)
Q Consensus 537 ~v--~~~~f~~~~~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~~~~~~~~~~ 614 (1495)
+. .++.++.+.+..+.++.+.+++++.++..+..|+..+...+..+.+++++++|+.++++.++.+.+... .+. ..
T Consensus 240 ~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~~~-~~~-~~ 317 (529)
T TIGR02857 240 LSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGKAP-VTA-AP 317 (529)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcC-CCC-CC
Confidence 11 112334445557789999999999999999999999999999999999999999999975432211111 111 11
Q ss_pred cccEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe------------
Q 000452 615 ETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------ 682 (1495)
Q Consensus 615 ~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~------------ 682 (1495)
...|+++|++|+|+.. ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 318 ~~~i~~~~v~f~y~~~-~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~ 396 (529)
T TIGR02857 318 APSLEFSGLSVAYPGR-RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRD 396 (529)
T ss_pred CCeEEEEEEEEECCCC-CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHh
Confidence 2369999999999742 357999999999999999999999999999999999999999999999984
Q ss_pred -EEEEccCCcccCccHHHHHhcCCC-CCHHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHHHHHhccC
Q 000452 683 -KAYVAQSPWIQSGKIEDNILFGKE-MDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQD 760 (1495)
Q Consensus 683 -~ayv~Q~~~l~~~ti~enI~fg~~-~~~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~ 760 (1495)
++||+|+|++|++||+|||.++.+ .++++..++++.++++++++.+|+|.+|.+||+|.+||||||||++||||++++
T Consensus 397 ~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~ 476 (529)
T TIGR02857 397 QIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRD 476 (529)
T ss_pred heEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcC
Confidence 699999999999999999999865 678899999999999999999999999999999999999999999999999999
Q ss_pred CCEeEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEecCCCccccCCEEEEE
Q 000452 761 ADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVI 814 (1495)
Q Consensus 761 ~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~~~d~i~~l 814 (1495)
|+|+|||||||+||+++++.+++. +....+++|+|+|||+++.+..||+|++|
T Consensus 477 ~~ililDE~ts~lD~~~~~~i~~~-l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 477 APLLLLDEPTAHLDAETEALVTEA-LRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred CCEEEEeCcccccCHHHHHHHHHH-HHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 999999999999999999999765 45555789999999999999899999985
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-60 Score=563.18 Aligned_cols=529 Identities=21% Similarity=0.293 Sum_probs=418.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 305 LTALVAIVCTLATYVGPYLIDTLVQYLSGKRDFENEGYALVSAFCVAKLVECLCQRFFVFRLEQLGIRLRAALIAMIYNK 384 (1495)
Q Consensus 305 ~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~g~rir~~L~~~iy~K 384 (1495)
+.+++.++..++...+.+++-.+++.+-..+. ...-+.++++++++.++.+++...-.....+.+.++|..|+..+++|
T Consensus 4 i~~ll~~l~~i~~i~qa~llA~~l~~l~~~~~-~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~ 82 (559)
T COG4988 4 ISALLAVLSGIAIIAQAALLADILTKLIEGQL-FQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDK 82 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777777777766544332 23344556667777778888887777888899999999999999999
Q ss_pred HhcCCcchhcCCCHHHHHHHHHHHHHHHHHHHH-HhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 385 GLKLSSQAKQGNTSGEIINFMTVDAERVAELSW-YIHD---PWLFLFEVALSFLILYKSLGIASVAAFFGTVIFMLVNVP 460 (1495)
Q Consensus 385 ~L~ls~~~~~~~~~G~i~nl~s~D~~~i~~~~~-~~~~---~w~~pl~i~~~~~lL~~~lG~~~l~gl~~~i~~~~~~~~ 460 (1495)
..+++...-++.++|++.++++.-++.+..++. |++. .-..|+-+.++++...+.-++-.++..- ++.+..+.
T Consensus 83 l~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~P---lIPlfMil 159 (559)
T COG4988 83 LAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAP---LIPLFMIL 159 (559)
T ss_pred HHhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---HHHHHHHH
Confidence 999999988899999999999999999887643 3333 3345555555555554433333222222 22222333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 461 LSTVQEKFQNELMKSKDERMKATSEILRNMRILKLQGWELKFLSK----TIDLRKSESGWLKRCLYTSSITSFVFWCAPT 536 (1495)
Q Consensus 461 ~~~~~~~~~~~~m~~~D~R~~~~~E~L~~ir~IK~~~wE~~f~~~----i~~~R~~E~~~l~~~~~~~~~~~~~~~~~p~ 536 (1495)
+.+..++..++.++.-..--...-+-|+|+.++|.|+-.+...++ -++.|+.-|+.+|-.....++..++...+..
T Consensus 160 vg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiA 239 (559)
T COG4988 160 VGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIA 239 (559)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555556666666666666777899999999999987655554 4667899999888776666655554444333
Q ss_pred HHHHHHHHHHHHhc-CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccC-CCCCCC
Q 000452 537 FVSVITFGTCILLK-VPLESGKVLSAIATFRLLQILIYKLPAIISMTIQTKVSLQRIASFFCLDELQPDLVEK-QPRGSS 614 (1495)
Q Consensus 537 ~v~~~~f~~~~~~~-~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~~~~-~~~~~~ 614 (1495)
++ .+ +...-+.+ ++++....|.++-+---+-.|++.+......-.++..+.+.+..|++.|....+..++ ......
T Consensus 240 lv-Av-~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~ 317 (559)
T COG4988 240 LV-AV-YIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEP 317 (559)
T ss_pred HH-HH-HHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCC
Confidence 32 22 33334455 5899999999998888889999999999999999999999999999988664432221 111112
Q ss_pred cccEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe------------
Q 000452 615 ETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------ 682 (1495)
Q Consensus 615 ~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~------------ 682 (1495)
...+..+|++|.|+. ++++++|+||++++|++++|+|+||||||||+++|+|+.+|++|+|.+||.
T Consensus 318 ~~ei~~~~l~~~y~~--g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k 395 (559)
T COG4988 318 PIEISLENLSFRYPD--GKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRK 395 (559)
T ss_pred CceeeecceEEecCC--CCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHh
Confidence 234555699999974 348999999999999999999999999999999999999999999999983
Q ss_pred -EEEEccCCcccCccHHHHHhcCCC-CCHHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHHHHHhccC
Q 000452 683 -KAYVAQSPWIQSGKIEDNILFGKE-MDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQD 760 (1495)
Q Consensus 683 -~ayv~Q~~~l~~~ti~enI~fg~~-~~~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~ 760 (1495)
++||+|+|.++++|+||||+++++ .+++...++++..+|.+.++. |+|.+|.+||+|.+|||||+|||+||||++++
T Consensus 396 ~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~ 474 (559)
T COG4988 396 QISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSP 474 (559)
T ss_pred HeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCC
Confidence 689999999999999999999987 678899999999999999998 99999999999999999999999999999999
Q ss_pred CCEeEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEecCCCccccCCEEEEEeCCEEEEecChHHHHhcCCchhHHHH
Q 000452 761 ADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVINSGTDFMELVD 840 (1495)
Q Consensus 761 ~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~l~~ 840 (1495)
+++|||||||++||+++++.|.+ .+....++||+|+|||+++.+..+|+|++|++|++++.|+++++.++++.|.+++.
T Consensus 475 ~~l~llDEpTA~LD~etE~~i~~-~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~~~~y~~l~~ 553 (559)
T COG4988 475 ASLLLLDEPTAHLDAETEQIILQ-ALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEKQGLYANLLK 553 (559)
T ss_pred CCEEEecCCccCCCHhHHHHHHH-HHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhcCcHHHHHHH
Confidence 99999999999999999877764 56667788999999999999999999999999999999999999999888998887
Q ss_pred HHH
Q 000452 841 AHK 843 (1495)
Q Consensus 841 ~~~ 843 (1495)
.+.
T Consensus 554 ~q~ 556 (559)
T COG4988 554 QQE 556 (559)
T ss_pred HHh
Confidence 643
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-62 Score=618.61 Aligned_cols=479 Identities=21% Similarity=0.312 Sum_probs=335.9
Q ss_pred cEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcC--eEEEEccCCcccC
Q 000452 617 AIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG--TKAYVAQSPWIQS 694 (1495)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g--~~ayv~Q~~~l~~ 694 (1495)
.++++|++++|+. ++++|+|+||+|++|++++|+||||||||||+++|+|+.+|++|+|.+++ .++|++|+|+++.
T Consensus 4 ~i~~~nls~~~~~--~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~ 81 (552)
T TIGR03719 4 IYTMNRVSKVVPP--KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDP 81 (552)
T ss_pred EEEEeeEEEecCC--CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCCC
Confidence 5899999999952 35799999999999999999999999999999999999999999999974 6899999998874
Q ss_pred -ccHHHHHhcCCCC-------------------C--------HHHHHHHHHHhCcH-------HHHhhcCCCCcccccCC
Q 000452 695 -GKIEDNILFGKEM-------------------D--------RERYNAVLDACSLE-------KDLEILSFGDQTVVGER 739 (1495)
Q Consensus 695 -~ti~enI~fg~~~-------------------~--------~~~~~~vl~~~~l~-------~dl~~l~~gd~t~ig~~ 739 (1495)
.|++|||.++... + .+++.++++.++.. +-++.+... .....
T Consensus 82 ~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~---~~~~~ 158 (552)
T TIGR03719 82 TKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCP---PWDAD 158 (552)
T ss_pred CCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCC---cccCc
Confidence 5999999875310 1 01233444444432 112222221 13567
Q ss_pred CCccchHHHHHHHHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEecCCCcccc-CCEEEEEeCCE
Q 000452 740 GINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPA-ADLVLVIKDGK 818 (1495)
Q Consensus 740 g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~~-~d~i~~l~~G~ 818 (1495)
..+|||||||||+||||++.+|+++||||||++||+.+.+++.+ .+... ++|+|+|||+++++.. ||++++|++|+
T Consensus 159 ~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~-~L~~~--~~tvIiisHd~~~~~~~~d~v~~l~~g~ 235 (552)
T TIGR03719 159 VTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQ-HLQEY--PGTVVAVTHDRYFLDNVAGWILELDRGR 235 (552)
T ss_pred hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHH-HHHhC--CCeEEEEeCCHHHHHhhcCeEEEEECCE
Confidence 88999999999999999999999999999999999999888875 34433 4699999999999876 99999999999
Q ss_pred EE-EecChHHHHhcCCchhHHHHHHHhhhcccccccCCCCCCCCCCCCCCCCCCcccccccccccccccccccccccchh
Q 000452 819 IT-QAGKYTDVINSGTDFMELVDAHKQALSTLDSIEGRPLSEKGSANGENDGTSATDGVVKEVENKEVQNDREDKVAEPQ 897 (1495)
Q Consensus 819 i~-~~g~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 897 (1495)
++ ..|+++++.+... ...+.
T Consensus 236 i~~~~g~~~~~~~~~~-------~~~~~---------------------------------------------------- 256 (552)
T TIGR03719 236 GIPWEGNYSSWLEQKE-------KRLEQ---------------------------------------------------- 256 (552)
T ss_pred EEEecCCHHHHHHHHH-------HHHHH----------------------------------------------------
Confidence 76 7798887653210 00000
Q ss_pred hhhhHHHHHhhcCchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhcccCCCCCCCcchhHHHHHHHHHH
Q 000452 898 RQLVQEEEREKGKVEFSVYWKYITAAYGGVLVPFILLAQTLFQILQIASNYWIAWATPASKDIKPRVTGSMLLIVFVALA 977 (1495)
Q Consensus 898 ~~~~~~e~~~~g~v~~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~y~~l~ 977 (1495)
. ..+.++. ...+.... .|+. . .
T Consensus 257 -~-~~~~~~~---------~~~~~~~~-----------------------~~~~---~-----~---------------- 278 (552)
T TIGR03719 257 -E-EKEESAR---------QKALKREL-----------------------EWVR---S-----S---------------- 278 (552)
T ss_pred -H-HHHHHHH---------HHHHHHHH-----------------------HHHH---h-----h----------------
Confidence 0 0000000 00000000 0000 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccccccccccchhHHhcchhHHHhhhHHHHHHHHHHHHHHHH
Q 000452 978 FGSSFCILARSTLLATAGYKTATLLFNKMHYCIFRAPMSFFDATPSGRIINRASTDQSAVDLSIPALIGSFAFSIIRVLG 1057 (1495)
Q Consensus 978 ~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~ll~ap~~ffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~~~ 1057 (1495)
+
T Consensus 279 ------------------------------------~------------------------------------------- 279 (552)
T TIGR03719 279 ------------------------------------P------------------------------------------- 279 (552)
T ss_pred ------------------------------------h-------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcchHHHHhhccHHHHHHHHHHHHH
Q 000452 1058 VIGVMSLVAWQVFIVFIPVIATCIWYQQYYISSARELSRLVGVCKAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMD 1137 (1495)
Q Consensus 1058 ~~~~~~~~~~~~~~v~ip~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d 1137 (1495)
..++. +. +
T Consensus 280 --------------------------------~~~~~-------~~---------------------~------------ 287 (552)
T TIGR03719 280 --------------------------------KARQA-------KS---------------------K------------ 287 (552)
T ss_pred --------------------------------hhHHH-------HH---------------------H------------
Confidence 00000 00 0
Q ss_pred HhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 000452 1138 GYSRPTFHVAAAMEWLGFRLDMLSNITFAFSLVFLISIPKGFIDPAIAGLAVTYGLTLNNLQAMLIWLACQMENKIISVE 1217 (1495)
Q Consensus 1138 ~~~~~~~~~~~~~~wl~~rl~~l~~~~~~~~~~~~~~~~~~~~~~~~~gl~l~~~~~l~~~~~~~~~~~~~le~~~~sve 1217 (1495)
......+
T Consensus 288 -------------------------------------------------------------------------~~~~~~~ 294 (552)
T TIGR03719 288 -------------------------------------------------------------------------ARLARYE 294 (552)
T ss_pred -------------------------------------------------------------------------HHHHHHH
Confidence 0000000
Q ss_pred HHHHHhcCCCCCCCccccCCCCCCCCCcceEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhc
Q 000452 1218 RIFQYTCIPSEPPLEIEESRPNHSWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFR 1297 (1495)
Q Consensus 1218 Ri~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~r 1297 (1495)
+..+. . ++.++.......+...-+.+..|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|
T Consensus 295 ~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G 370 (552)
T TIGR03719 295 ELLSQ-E-FQKRNETAEIYIPPGPRLGDKVIEAENLSKGFGD--KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITG 370 (552)
T ss_pred hhhhh-c-ccccCCCceeecCCCCCCCCeEEEEeeEEEEECC--eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcC
Confidence 10000 0 0000000000000000011235999999999964 359999999999999999999999999999999999
Q ss_pred cccCCccEEEEcCEeCCCCCHHHHhcccEEEcccCc-CCC-CcHHHhcCCCC---CC--CHHHHHHHHHHcCCcHHHHhc
Q 000452 1298 IVEPAAGQILIDGIDISLIGLHDLRTRLSIIPQDPV-MFE-GTVRSNVDPLE---EY--TDEQIWEALDKCQLGDEVRKK 1370 (1495)
Q Consensus 1298 l~ep~~G~I~IDG~dI~~i~l~~LR~~isiIpQdp~-LF~-GTIR~NLdp~~---~~--sd~ei~~aL~~~~L~~~v~~l 1370 (1495)
+.+|++|+|.+++ + .+++|+||++. ++. -|+++|+.... .. .+.+..++++..++.+..
T Consensus 371 ~~~p~~G~i~~~~-~----------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--- 436 (552)
T TIGR03719 371 QEQPDSGTIKIGE-T----------VKLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSD--- 436 (552)
T ss_pred CCCCCCeEEEECC-c----------eEEEEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhH---
Confidence 9999999999964 2 16999999973 665 49999996321 11 133455677777764221
Q ss_pred cCCcccccccCCCCCCchHHHHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-c
Q 000452 1371 EGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVID-S 1449 (1495)
Q Consensus 1371 p~gLdt~v~e~G~nLS~GQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~~-~ 1449 (1495)
.+. ....||||||||++|||||+.+|+||||||||++||+.+...+.+.|++. . .|||+|+|+++.+.. |
T Consensus 437 ---~~~----~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~-~~viivsHd~~~~~~~~ 507 (552)
T TIGR03719 437 ---QQK----KVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEF-A-GCAVVISHDRWFLDRIA 507 (552)
T ss_pred ---hcC----chhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHC-C-CeEEEEeCCHHHHHHhC
Confidence 122 23469999999999999999999999999999999999999999999986 3 489999999999876 9
Q ss_pred CEEEEEeC-cEEEEe-cChhHHhh
Q 000452 1450 DMVLLLSH-GLIEEY-DSPRKLLE 1471 (1495)
Q Consensus 1450 DrIlVL~~-G~ivE~-gsp~~Ll~ 1471 (1495)
|+|++|++ |+++++ |++.++.+
T Consensus 508 d~i~~l~~~~~~~~~~g~~~~~~~ 531 (552)
T TIGR03719 508 THILAFEGDSHVEWFEGNYSEYEE 531 (552)
T ss_pred CEEEEEECCCeEEEeCCCHHHHHH
Confidence 99999997 688754 66666654
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-62 Score=550.51 Aligned_cols=455 Identities=25% Similarity=0.428 Sum_probs=353.5
Q ss_pred ccEEEEeeEEEecCCC-CCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCC-----CCcEEEEcC--------
Q 000452 616 TAIEIADGNFSWDISS-HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPK-----ISGTLKLCG-------- 681 (1495)
Q Consensus 616 ~~i~~~~~~~~~~~~~-~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~-----~~G~v~~~g-------- 681 (1495)
..++++|++.++...+ ...++++|||++++||.+|+||++|||||-..++++|+++. -+|+|.++|
T Consensus 5 ~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se 84 (534)
T COG4172 5 PLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASE 84 (534)
T ss_pred cceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCH
Confidence 4688999988886432 45689999999999999999999999999999999999975 478999887
Q ss_pred ---------eEEEEccCCcc-cC--cc----HHHHHhcCCCCCH----HHHHHHHHHhCcHHHHhhcCCCCcccccCCCC
Q 000452 682 ---------TKAYVAQSPWI-QS--GK----IEDNILFGKEMDR----ERYNAVLDACSLEKDLEILSFGDQTVVGERGI 741 (1495)
Q Consensus 682 ---------~~ayv~Q~~~l-~~--~t----i~enI~fg~~~~~----~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~ 741 (1495)
+|+.++|+|.- .| -| +.|-|...+.+.. ++..+.++..++.+- ...+...++
T Consensus 85 ~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p--------~~rl~~yPH 156 (534)
T COG4172 85 RQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEP--------EKRLDAYPH 156 (534)
T ss_pred HHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCch--------hhhhhhCCc
Confidence 47999999953 22 24 4555555444433 344445555555321 122456789
Q ss_pred ccchHHHHHHHHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHh--CCCEEEEEecCCCcccc-CCEEEEEeCCE
Q 000452 742 NLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL--NSKTVLYVTHQVEFLPA-ADLVLVIKDGK 818 (1495)
Q Consensus 742 ~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~--~~~tvIlvTH~~~~l~~-~d~i~~l~~G~ 818 (1495)
+|||||||||.||.||..+||++|-||||.|||..+..+|.+ +++.+. .|..++++|||+..+.. ||+|+||.+|+
T Consensus 157 eLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~-Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ 235 (534)
T COG4172 157 ELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILD-LLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGE 235 (534)
T ss_pred ccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHH-HHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccE
Confidence 999999999999999999999999999999999999999986 444443 38899999999999987 99999999999
Q ss_pred EEEecChHHHHhcCC-chhHHHHHHHhhhcccccccCCCCCCCCCCCCCCCCCCcccccccccccccccccccccccchh
Q 000452 819 ITQAGKYTDVINSGT-DFMELVDAHKQALSTLDSIEGRPLSEKGSANGENDGTSATDGVVKEVENKEVQNDREDKVAEPQ 897 (1495)
Q Consensus 819 i~~~g~~~~l~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 897 (1495)
+++.|+.+++..... .|.+.+-
T Consensus 236 ivE~~~t~~lF~~PqHpYTr~Ll--------------------------------------------------------- 258 (534)
T COG4172 236 IVETGTTETLFAAPQHPYTRKLL--------------------------------------------------------- 258 (534)
T ss_pred EeecCcHHHHhhCCCChHHHHHH---------------------------------------------------------
Confidence 999998777653211 0000000
Q ss_pred hhhhHHHHHhhcCchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhcccCCCCCCCcchhHHHHHHHHHH
Q 000452 898 RQLVQEEEREKGKVEFSVYWKYITAAYGGVLVPFILLAQTLFQILQIASNYWIAWATPASKDIKPRVTGSMLLIVFVALA 977 (1495)
Q Consensus 898 ~~~~~~e~~~~g~v~~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~y~~l~ 977 (1495)
T Consensus 259 -------------------------------------------------------------------------------- 258 (534)
T COG4172 259 -------------------------------------------------------------------------------- 258 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccccccccccchhHHhcchhHHHhhhHHHHHHHHHHHHHHHH
Q 000452 978 FGSSFCILARSTLLATAGYKTATLLFNKMHYCIFRAPMSFFDATPSGRIINRASTDQSAVDLSIPALIGSFAFSIIRVLG 1057 (1495)
Q Consensus 978 ~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~ll~ap~~ffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~~~ 1057 (1495)
T Consensus 259 -------------------------------------------------------------------------------- 258 (534)
T COG4172 259 -------------------------------------------------------------------------------- 258 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcchHHHHhhccHHHHHHHHHHHHH
Q 000452 1058 VIGVMSLVAWQVFIVFIPVIATCIWYQQYYISSARELSRLVGVCKAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMD 1137 (1495)
Q Consensus 1058 ~~~~~~~~~~~~~~v~ip~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d 1137 (1495)
T Consensus 259 -------------------------------------------------------------------------------- 258 (534)
T COG4172 259 -------------------------------------------------------------------------------- 258 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 000452 1138 GYSRPTFHVAAAMEWLGFRLDMLSNITFAFSLVFLISIPKGFIDPAIAGLAVTYGLTLNNLQAMLIWLACQMENKIISVE 1217 (1495)
Q Consensus 1138 ~~~~~~~~~~~~~~wl~~rl~~l~~~~~~~~~~~~~~~~~~~~~~~~~gl~l~~~~~l~~~~~~~~~~~~~le~~~~sve 1217 (1495)
T Consensus 259 -------------------------------------------------------------------------------- 258 (534)
T COG4172 259 -------------------------------------------------------------------------------- 258 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhcCCCCCCCccccCCCCCCCCCcceEEEeeeeEEeCCC---------CCcceeeeeEEeeCCcEEEEEcCCCCCH
Q 000452 1218 RIFQYTCIPSEPPLEIEESRPNHSWPSHGKIDLRDLQVRYAPH---------MPFVLRGISCTFPGEKKTGIVGRTGSGK 1288 (1495)
Q Consensus 1218 Ri~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nv~~~Y~~~---------~~~vL~~Is~~I~~GekvgIVGrTGSGK 1288 (1495)
..|+. ...+|..-...--++.+||.+.|+-. .-.+.+||||+.++||.+||||+|||||
T Consensus 259 --------~aeP~----g~~~p~~~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGK 326 (534)
T COG4172 259 --------AAEPS----GDPPPLPEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGK 326 (534)
T ss_pred --------hcCCC----CCCCCCCCCCCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCc
Confidence 00110 00011000111246667777766421 1247999999999999999999999999
Q ss_pred HHHHHHHhccccCCccEEEEcCEeCCCCCHHH---HhcccEEEcccCc--CC-CCcHHHhcC-------CC--CCCCHHH
Q 000452 1289 STLIQTLFRIVEPAAGQILIDGIDISLIGLHD---LRTRLSIIPQDPV--MF-EGTVRSNVD-------PL--EEYTDEQ 1353 (1495)
Q Consensus 1289 STLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~---LR~~isiIpQdp~--LF-~GTIR~NLd-------p~--~~~sd~e 1353 (1495)
|||-++|+|+.++. |+|..+|.||...+.++ +|+++-+|.|||+ |= .-||-+-|. |. ..-.|+.
T Consensus 327 sTlG~allrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~r 405 (534)
T COG4172 327 STLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQR 405 (534)
T ss_pred chHHHHHHhhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHH
Confidence 99999999999876 99999999999998776 6899999999996 22 225555442 11 1123567
Q ss_pred HHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhc--
Q 000452 1354 IWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHF-- 1431 (1495)
Q Consensus 1354 i~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f-- 1431 (1495)
+.+||+.+||+...... | ...||||||||++||||+.-+|++++||||||+||....+.|.+.+|+.-
T Consensus 406 v~~aL~EVGLDp~~r~R---Y-------PhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k 475 (534)
T COG4172 406 VIEALEEVGLDPATRNR---Y-------PHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQK 475 (534)
T ss_pred HHHHHHHcCCChhHhhc---C-------CcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHH
Confidence 99999999998765432 2 34699999999999999999999999999999999999999999998764
Q ss_pred CCcEEEEEecCchhhhc-cCEEEEEeCcEEEEecChhHHhhcCCChHHH
Q 000452 1432 SDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLENKSSSFSQ 1479 (1495)
Q Consensus 1432 ~~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~Ll~~~~s~f~~ 1479 (1495)
.+-+-++|+|++..++. ||+|+||.+|+|||+|+-+++++++...|.+
T Consensus 476 ~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~G~~~~if~~P~~~YT~ 524 (534)
T COG4172 476 HGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFANPQHEYTR 524 (534)
T ss_pred hCCeEEEEeccHHHHHHhhceEEEEeCCEEeeeCCHHHHhcCCCcHHHH
Confidence 36799999999999975 9999999999999999999999998877654
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-61 Score=618.40 Aligned_cols=199 Identities=19% Similarity=0.334 Sum_probs=168.7
Q ss_pred eEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccE
Q 000452 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLS 1326 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~is 1326 (1495)
.|+++||+++|+. ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+++. .+++
T Consensus 312 ~l~~~~l~~~y~~--~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig 378 (638)
T PRK10636 312 LLKMEKVSAGYGD--RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKLG 378 (638)
T ss_pred eEEEEeeEEEeCC--eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEEE
Confidence 6999999999964 35999999999999999999999999999999999999999999999741 2699
Q ss_pred EEcccC--cCCC-CcHHHhcCC-CCCCCHHHHHHHHHHcCCcH-HHHhccCCcccccccCCCCCCchHHHHHHHHHHHcc
Q 000452 1327 IIPQDP--VMFE-GTVRSNVDP-LEEYTDEQIWEALDKCQLGD-EVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLK 1401 (1495)
Q Consensus 1327 iIpQdp--~LF~-GTIR~NLdp-~~~~sd~ei~~aL~~~~L~~-~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALLr 1401 (1495)
|+||++ .+.. .|+.+|+.. .....++++.++|+..++.+ ...+ + ...||||||||++||||+++
T Consensus 379 y~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~-------~----~~~LSgGekqRl~La~~l~~ 447 (638)
T PRK10636 379 YFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTE-------E----TRRFSGGEKARLVLALIVWQ 447 (638)
T ss_pred EecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcC-------c----hhhCCHHHHHHHHHHHHHhc
Confidence 999985 3443 388888642 22334567888888888753 3322 2 24699999999999999999
Q ss_pred CCCeEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-cCEEEEEeCcEEE-EecChhHHhh
Q 000452 1402 RRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGLIE-EYDSPRKLLE 1471 (1495)
Q Consensus 1402 ~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~~-~DrIlVL~~G~iv-E~gsp~~Ll~ 1471 (1495)
+|+||||||||++||..+...+.+.|++. +.|||+|+|++..+.. ||+|++|++|+++ ..|++++..+
T Consensus 448 ~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 517 (638)
T PRK10636 448 RPNLLLLDEPTNHLDLDMRQALTEALIDF--EGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQQ 517 (638)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHHH
Confidence 99999999999999999999999999986 4599999999999875 9999999999998 5788888743
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-58 Score=632.85 Aligned_cols=549 Identities=16% Similarity=0.196 Sum_probs=398.8
Q ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 289 LKLIKAMFRSVWKDV-LLTALVAIVCTLATYVGPYLIDTLVQYLSGKRDFENEGYALVSAFCVAKLVECLCQRFFVFRLE 367 (1495)
Q Consensus 289 ~~l~~al~~~~~~~~-~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~ 367 (1495)
.+.++..++..++.. ++.+++.++..++....|+.++...+............+.+ +.+++..++..++.....+...
T Consensus 952 ~~~y~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~~~~-~iy~~l~i~~~~~~~~~~~~~~ 1030 (1522)
T TIGR00957 952 LSVYWDYMKAIGLFITFLSIFLFVCNHVSALASNYWLSLWTDDPMVNGTQNNTSLRL-SVYGALGILQGFAVFGYSMAVS 1030 (1522)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCcchHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 345555665543322 22233334445556667777776654211111111111111 1222222222232222334445
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcchhcCCCHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 368 QLGIRLRAALIAMIYNKGLKLSSQAKQGNTSGEIINFMTVDAERVAELSW-YIHDPWLFLFEVALSFLILYKSLGIASVA 446 (1495)
Q Consensus 368 ~~g~rir~~L~~~iy~K~L~ls~~~~~~~~~G~i~nl~s~D~~~i~~~~~-~~~~~w~~pl~i~~~~~lL~~~lG~~~l~ 446 (1495)
..+.+.-..+...+|+|.++.+...++++++|+|+|+++.|++.+.+... .+..+...++.++.++++++....+.+++
T Consensus 1031 ~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~~ 1110 (1522)
T TIGR00957 1031 IGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVI 1110 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66788888888999999999999999999999999999999999998654 44555566666666666555433333322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 447 AFFGTVIFMLVNVPLSTVQEKFQNELMKSKDERMKATSEILRNMRILKLQGWELKFLSKTIDLRKSESGWLKRCLYTSSI 526 (1495)
Q Consensus 447 gl~~~i~~~~~~~~~~~~~~~~~~~~m~~~D~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~ 526 (1495)
.+.++++...+..+..+..+..++.....+.......+|.++|+++||.|+||+.|.++..+.-+...+..........+
T Consensus 1111 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 1190 (1522)
T TIGR00957 1111 IPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRW 1190 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222233333334444444555556667778999999999999999999999888766555443332221111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-hcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc
Q 000452 527 TSFVFWCAPTFVSVITFGTCIL-LKVPLESGKVLSAIATFRLLQILIYKLPAIISMTIQTKVSLQRIASFFCLDELQPDL 605 (1495)
Q Consensus 527 ~~~~~~~~p~~v~~~~f~~~~~-~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~ 605 (1495)
..........++ ++..+.+.+ ..+.+++|.+..++.+...+..|+..+......+.++.+|.+||.+|++.++..+..
T Consensus 1191 ~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~ 1269 (1522)
T TIGR00957 1191 LAVRLECVGNCI-VLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQ 1269 (1522)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccc
Confidence 111111111111 112222233 346799999999999999999999999999999999999999999999765432211
Q ss_pred c-cCCCCC--CCcccEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe
Q 000452 606 V-EKQPRG--SSETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT 682 (1495)
Q Consensus 606 ~-~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~ 682 (1495)
. ...+.. +.++.|+++|++|+|+.+ .+++|+|+||+|++||++||||++|||||||+++|+|+++|++|+|.+||.
T Consensus 1270 ~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~ 1348 (1522)
T TIGR00957 1270 IQETAPPSGWPPRGRVEFRNYCLRYRED-LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGL 1348 (1522)
T ss_pred ccCCCCCCCCCCCCcEEEEEEEEEeCCC-CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCE
Confidence 1 111111 234579999999999743 357999999999999999999999999999999999999999999999993
Q ss_pred -------------EEEEccCCcccCccHHHHHhcCCCCCHHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHH
Q 000452 683 -------------KAYVAQSPWIQSGKIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQ 749 (1495)
Q Consensus 683 -------------~ayv~Q~~~l~~~ti~enI~fg~~~~~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkq 749 (1495)
++||||+|.+|+|||||||....++++++..++++.|++.+.++.+|+|.+|.+||+|.+|||||||
T Consensus 1349 dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQ 1428 (1522)
T TIGR00957 1349 NIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQ 1428 (1522)
T ss_pred EccccCHHHHHhcCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHH
Confidence 5999999999999999999833368888999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEecCCCccccCCEEEEEeCCEEEEecChHHHH
Q 000452 750 RIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVI 829 (1495)
Q Consensus 750 Rv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~ 829 (1495)
|++||||++++|+|+|||||||+||+++.+.|. +.++...+++|+|+|+|+++.+..||+|++|++|+|++.|+++|++
T Consensus 1429 rl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq-~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~~eLl 1507 (1522)
T TIGR00957 1429 LVCLARALLRKTKILVLDEATAAVDLETDNLIQ-STIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLL 1507 (1522)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHH-HHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999987775 5566667899999999999999999999999999999999999999
Q ss_pred hcCCchhHHHHH
Q 000452 830 NSGTDFMELVDA 841 (1495)
Q Consensus 830 ~~~~~~~~l~~~ 841 (1495)
++++.|.+++..
T Consensus 1508 ~~~~~f~~l~~~ 1519 (1522)
T TIGR00957 1508 QQRGIFYSMAKD 1519 (1522)
T ss_pred hCCCHHHHHHHH
Confidence 887778887654
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-60 Score=603.89 Aligned_cols=198 Identities=21% Similarity=0.326 Sum_probs=166.3
Q ss_pred eEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccE
Q 000452 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLS 1326 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~is 1326 (1495)
.|+++||+++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+ |.++ +++
T Consensus 319 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i~ 385 (635)
T PRK11147 319 VFEMENVNYQIDG--KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EVA 385 (635)
T ss_pred eEEEeeeEEEECC--eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EEE
Confidence 5999999999964 35999999999999999999999999999999999999999999999 4332 599
Q ss_pred EEcccC-cCCCC-cHHHhcCCC-CCC--C--HHHHHHHHHHcCCcH-HHHhccCCcccccccCCCCCCchHHHHHHHHHH
Q 000452 1327 IIPQDP-VMFEG-TVRSNVDPL-EEY--T--DEQIWEALDKCQLGD-EVRKKEGKLDSKVTENGENWSMGQRQLVCLGRV 1398 (1495)
Q Consensus 1327 iIpQdp-~LF~G-TIR~NLdp~-~~~--s--d~ei~~aL~~~~L~~-~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARA 1398 (1495)
|+||++ .++.. |+++|+... ... + +.++.+.|+..++.+ .. +.++ ..||||||||++||||
T Consensus 386 y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~----~~LSgGekqRl~la~a 454 (635)
T PRK11147 386 YFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRA-------MTPV----KALSGGERNRLLLARL 454 (635)
T ss_pred EEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHH-------hChh----hhCCHHHHHHHHHHHH
Confidence 999986 46655 999999632 111 2 456777787777642 22 2222 4699999999999999
Q ss_pred HccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-cCEEEEEe-CcEEEEe-cChhHHh
Q 000452 1399 LLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVID-SDMVLLLS-HGLIEEY-DSPRKLL 1470 (1495)
Q Consensus 1399 LLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~~-~DrIlVL~-~G~ivE~-gsp~~Ll 1470 (1495)
++.+|++|||||||++||..+...+.+.|++. +.|||+|||+.+.+.. ||+|++|+ +|++.++ |++.+.+
T Consensus 455 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~ 527 (635)
T PRK11147 455 FLKPSNLLILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDAR 527 (635)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHH
Confidence 99999999999999999999999999999876 5699999999998865 99999998 8999986 5666654
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-57 Score=529.48 Aligned_cols=542 Identities=22% Similarity=0.271 Sum_probs=394.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcchhHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 290 KLIKAMFRSVWKDVLLTALVAIVCTLATYVGPYLIDTLVQYLSGKRDFENEGYAL-VSAFCVAKLVECLCQRFFVFRLEQ 368 (1495)
Q Consensus 290 ~l~~al~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l-~~~l~~~~~~~~~~~~~~~~~~~~ 368 (1495)
++++..++ .|+.++++.+++++..++...-=.+-..+|....-.+......+.+ +++.=...+..+.....-...+..
T Consensus 6 p~i~l~~~-~~~~l~Lgi~l~~~t~lasigLl~lSGwfisasAiag~~~~f~~~~p~a~VR~~aI~Rt~~RY~ERlvsH~ 84 (573)
T COG4987 6 PYLRLYKR-HKFGLLLGIVLAILTLLASIGLLTLSGWFISASAIAGLAYIFNVMLPSAGVRGLAILRTAARYVERLVSHD 84 (573)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 34555555 7777777777777665554433233333443211111100111222 222112222222222222222334
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcchhcCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH--HHHHHHHHHH
Q 000452 369 LGIRLRAALIAMIYNKGLKLSSQAKQGNTSGEIINFMTVDAERVAELSWYIHDPWLFLFEVALSFLIL--YKSLGIASVA 446 (1495)
Q Consensus 369 ~g~rir~~L~~~iy~K~L~ls~~~~~~~~~G~i~nl~s~D~~~i~~~~~~~~~~w~~pl~i~~~~~lL--~~~lG~~~l~ 446 (1495)
...|+-+.++-.+|+|...++..-.....+|++.|++..|++.+++.+.....+|...+-++.+..+. |.-++.+.+.
T Consensus 85 AtfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f~~~~~Alll 164 (573)
T COG4987 85 ATFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALLL 164 (573)
T ss_pred HHHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 46688999999999999999998888899999999999999999999999999988776666555443 4455566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 447 AFFGTVIFMLVNVPLSTVQEKFQNELMKSKDERMKATSEILRNMRILKLQGWELKFLSKTIDLRKSESGWLKRCLYTSSI 526 (1495)
Q Consensus 447 gl~~~i~~~~~~~~~~~~~~~~~~~~m~~~D~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~ 526 (1495)
++...++++.+...+.+.-++..++..+.+..-.....+.+.|+.-++++|-++.|.+.++ +.|..|.+..+....+
T Consensus 165 ~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~---~~e~~~~~~q~k~~~~ 241 (573)
T COG4987 165 GLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALE---ATEASWLKAQRKQARF 241 (573)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 6666666666667777777888888888888888889999999999999999999988754 4455444433332222
Q ss_pred ---HHHHHHH-HHHHHHHHHHH-HHHHhcCCcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 000452 527 ---TSFVFWC-APTFVSVITFG-TCILLKVPLE-SGKVLSAIATFRLLQILIYKLPAIISMTIQTKVSLQRIASFFCLDE 600 (1495)
Q Consensus 527 ---~~~~~~~-~p~~v~~~~f~-~~~~~~~~L~-~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e 600 (1495)
..++... .-.++....++ .+..-.+..+ +..+...+..|..+..-....|.++..+.+...|.+|+.+.++.++
T Consensus 242 ~~~~~a~~~l~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~ 321 (573)
T COG4987 242 TGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKP 321 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHHHhhhccCCc
Confidence 2222211 11111111111 1111112233 2222223333333332222334777888899999999999887765
Q ss_pred CCcccccCCCCCCCcccEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEc
Q 000452 601 LQPDLVEKQPRGSSETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLC 680 (1495)
Q Consensus 601 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~ 680 (1495)
......++.+. .+..++++|++|+|+.+ +.++|+|+||++++||++||+|++|||||||++.|.|.++|++|+|..+
T Consensus 322 e~~~~~~~~~~--~~~~l~~~~vsF~y~~~-~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~ 398 (573)
T COG4987 322 EVTFPDEQTAT--TGQALELRNVSFTYPGQ-QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLN 398 (573)
T ss_pred ccCCCccccCC--ccceeeeccceeecCCC-ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeEC
Confidence 43322111111 12279999999999854 4689999999999999999999999999999999999999999999999
Q ss_pred C-------------eEEEEccCCcccCccHHHHHhcCCC-CCHHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchH
Q 000452 681 G-------------TKAYVAQSPWIQSGKIEDNILFGKE-MDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGG 746 (1495)
Q Consensus 681 g-------------~~ayv~Q~~~l~~~ti~enI~fg~~-~~~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGG 746 (1495)
| .+++++|.+.+|++|+|||+.++++ -++|...++++..+|++-++..|+|.+|.+||.|..||||
T Consensus 399 g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGG 478 (573)
T COG4987 399 GVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGG 478 (573)
T ss_pred CcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCch
Confidence 8 3578999999999999999999986 4678889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEecCCCccccCCEEEEEeCCEEEEecChH
Q 000452 747 QKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYT 826 (1495)
Q Consensus 747 QkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~~~d~i~~l~~G~i~~~g~~~ 826 (1495)
||||++|||++.+|++++||||||.+||+.|++++.+. +....+|||+|+|||++..++.+|+|++|++|+++++|+|+
T Consensus 479 E~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~l-l~~~~~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~ 557 (573)
T COG4987 479 ERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLAL-LFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHA 557 (573)
T ss_pred HHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHH-HHHHhcCCeEEEEecccccHhhcCEEEEEECCeeeecCCHH
Confidence 99999999999999999999999999999999999864 44566899999999999999999999999999999999999
Q ss_pred HHHhcCCchhHHH
Q 000452 827 DVINSGTDFMELV 839 (1495)
Q Consensus 827 ~l~~~~~~~~~l~ 839 (1495)
+++.+++.|.++.
T Consensus 558 ~Ll~~~g~~~~l~ 570 (573)
T COG4987 558 ELLANNGRYKRLY 570 (573)
T ss_pred hhhccccHHHHHh
Confidence 9999877777654
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-58 Score=627.65 Aligned_cols=211 Identities=21% Similarity=0.264 Sum_probs=177.7
Q ss_pred eEEEeeeeEEeCC-----------CCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccC--CccEEEEcCEeC
Q 000452 1247 KIDLRDLQVRYAP-----------HMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEP--AAGQILIDGIDI 1313 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~-----------~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep--~~G~I~IDG~dI 1313 (1495)
.+.|+||++.++. +...+|+|||++|+|||.+||+|+||||||||+++|.|..++ .+|+|.+||.++
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 6999999998752 123699999999999999999999999999999999999763 689999999886
Q ss_pred CCCCHHHHhcccEEEcccCcCCCC-cHHHhcCCC------CCCCHH----HHHHHHHHcCCcHHHHhccCCcccccccCC
Q 000452 1314 SLIGLHDLRTRLSIIPQDPVMFEG-TVRSNVDPL------EEYTDE----QIWEALDKCQLGDEVRKKEGKLDSKVTENG 1382 (1495)
Q Consensus 1314 ~~i~l~~LR~~isiIpQdp~LF~G-TIR~NLdp~------~~~sd~----ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G 1382 (1495)
.+ ...|+.++|++|++.++.. ||||||... .+.+++ .+.++++..+|.+. .|+.+|..+
T Consensus 947 ~~---~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~-------~~~~vg~~~ 1016 (1470)
T PLN03140 947 KQ---ETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNL-------KDAIVGLPG 1016 (1470)
T ss_pred Ch---HHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhH-------hCCccCCCC
Confidence 42 4577889999999988765 999999521 123333 36678888887643 366666544
Q ss_pred -CCCCchHHHHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchh--hhccCEEEEEeC-
Q 000452 1383 -ENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHF-SDCTVITIAHRITS--VIDSDMVLLLSH- 1457 (1495)
Q Consensus 1383 -~nLS~GQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f-~~~TVI~IAHRl~t--i~~~DrIlVL~~- 1457 (1495)
..||||||||++|||||+.+|+||+||||||+||+.+...+.+.|++.. .++|||+++|+++. ...||++++|++
T Consensus 1017 ~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~g 1096 (1470)
T PLN03140 1017 VTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1096 (1470)
T ss_pred CCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCC
Confidence 6799999999999999999999999999999999999999999999865 47999999999984 356999999996
Q ss_pred cEEEEecChh
Q 000452 1458 GLIEEYDSPR 1467 (1495)
Q Consensus 1458 G~ivE~gsp~ 1467 (1495)
|+++.+|++.
T Consensus 1097 G~~v~~G~~~ 1106 (1470)
T PLN03140 1097 GQVIYSGPLG 1106 (1470)
T ss_pred CEEEEECCcc
Confidence 8999999874
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-58 Score=534.19 Aligned_cols=485 Identities=19% Similarity=0.209 Sum_probs=364.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccccccccccchhHHhcchhHHHhhhHHHHHHHHHHHH
Q 000452 974 VALAFGSSFCILARSTLLATAGYKTATLLFNKMHYCIFRAPMSFFDATPSGRIINRASTDQSAVDLSIPALIGSFAFSII 1053 (1495)
Q Consensus 974 ~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~ll~ap~~ffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~ 1053 (1495)
.++.++..++..+|+.++...|.+.-.++....+...+++|..--...+..+.+ +|++.+..++...-...++..=
T Consensus 70 l~ly~~~glLd~iR~~~l~Rig~~lD~~L~~~v~~a~~~~~l~~~~~g~~~Q~L----rDL~qvR~Fltg~g~~A~fDaP 145 (580)
T COG4618 70 LGLYAFQGLLDAIRSRVLVRIGERLDRQLNGPVFAASFSAPLLRRGSGDGLQPL----RDLDQVRQFLTGTGLTAFFDAP 145 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHhhcCCCccccch----hhHHHHHHHHcCCCcchhcCCc
Confidence 344556777888999999999999999999999999988877543333333444 3666666555332111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcchHHHHhhccHHHHHHHHH
Q 000452 1054 RVLGVIGVMSLVAWQVFIVFIPVIATCIWYQQYYISSARELSRLVGVCKAPLIQHFAETVSGSTTIRSFDQESRFIDTNM 1133 (1495)
Q Consensus 1054 ~~~~~~~~~~~~~~~~~~v~ip~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~ 1133 (1495)
-.-..+++++...|++.++.+.-.++.+.+.-.--...|+--+..++....-.++..-+.....+|+|.|+..+..+++.
T Consensus 146 W~P~yl~v~fl~Hp~lG~~a~~ga~iLv~la~ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~ 225 (580)
T COG4618 146 WMPLYLAVIFLFHPWLGLIALAGAIILVVLALLNERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWG 225 (580)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHH
Confidence 12334556666777777665544433333322222333444444555666677888899999999999999887776665
Q ss_pred HHHHHhh----chHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 1134 ELMDGYS----RPTFHVAAAMEWL-GFRLDMLSNITFAFSLVFLISIPKGFIDPAIAGLAVTYGLTLNNLQAMLIWLACQ 1208 (1495)
Q Consensus 1134 ~~~d~~~----~~~~~~~~~~~wl-~~rl~~l~~~~~~~~~~~~~~~~~~~~~~~~~gl~l~~~~~l~~~~~~~~~~~~~ 1208 (1495)
+....+. ++.-.......-- .+|+-+- +.+. .+-..+...|.+++|..-..-...-..-..+...+..|.+
T Consensus 226 ~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQ-s~iL---g~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq 301 (580)
T COG4618 226 RFNAAYLSAQERASDRNGAFGALSRALRMALQ-SAVL---GLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQ 301 (580)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHHH---hcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHH
Confidence 5544433 3222221111100 1111111 1111 1112234467788776433222222223445678888999
Q ss_pred HHHHhhHHHHHHHHhcCCCCCCCccccCCCCCCCCCcceEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCH
Q 000452 1209 MENKIISVERIFQYTCIPSEPPLEIEESRPNHSWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGK 1288 (1495)
Q Consensus 1209 le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGK 1288 (1495)
+-....|..|+.+.+...+++....+- | - .+|.+.++++++.=++...++|+||||+++|||-+||||||||||
T Consensus 302 ~~~Ar~s~~Rl~~lL~~~p~~~~~m~L--P---~-P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGK 375 (580)
T COG4618 302 FVAARQSYKRLNELLAELPAAAERMPL--P---A-PQGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGK 375 (580)
T ss_pred HHHHHHHHHHHHHHHHhCccccCCCCC--C---C-CCceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccH
Confidence 999999999999998755443321111 1 1 268999999999666666689999999999999999999999999
Q ss_pred HHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccEEEcccCcCCCCcHHHhcCCCC-CCCHHHHHHHHHHcCCcHHH
Q 000452 1289 STLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNVDPLE-EYTDEQIWEALDKCQLGDEV 1367 (1495)
Q Consensus 1289 STLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~isiIpQdp~LF~GTIR~NLdp~~-~~sd~ei~~aL~~~~L~~~v 1367 (1495)
|||.++|.|...|++|.|.+||-|+.+-+.+++=++|||.|||-.||+|||++||.-|+ +.+++.|.+|.+.++.+|.|
T Consensus 376 STLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelI 455 (580)
T COG4618 376 STLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELI 455 (580)
T ss_pred HHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHH
Confidence 99999999999999999999999999999999999999999999999999999998666 78889999999999999999
Q ss_pred HhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhh
Q 000452 1368 RKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHF-SDCTVITIAHRITSV 1446 (1495)
Q Consensus 1368 ~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f-~~~TVI~IAHRl~ti 1446 (1495)
.++|+||||.|||+|..||||||||++|||||+.+|+++|||||-||||.+-|+.+.++|.+.. +++|+|+||||++.+
T Consensus 456 l~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L 535 (580)
T COG4618 456 LRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSAL 535 (580)
T ss_pred HhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999987764 689999999999999
Q ss_pred hccCEEEEEeCcEEEEecChhHHhhc
Q 000452 1447 IDSDMVLLLSHGLIEEYDSPRKLLEN 1472 (1495)
Q Consensus 1447 ~~~DrIlVL~~G~ivE~gsp~~Ll~~ 1472 (1495)
..+|+|+||++|++..||+-+|.+++
T Consensus 536 ~~~Dkilvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 536 ASVDKILVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred hhcceeeeecCChHHhcCCHHHHHHH
Confidence 99999999999999999999999864
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-57 Score=593.48 Aligned_cols=528 Identities=17% Similarity=0.214 Sum_probs=412.1
Q ss_pred HHHHHhhHHHHHhhcccCCCC-CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccc
Q 000452 940 QILQIASNYWIAWATPASKDI-KPRVTGSMLLIVFVALAFGSSFCILARSTLLATAGYKTATLLFNKMHYCIFRAPMSFF 1018 (1495)
Q Consensus 940 ~~~~~~~~~wl~~~~~~~~~~-~~~~~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~ll~ap~~ff 1018 (1495)
.......|..+........+. .+......|....++..++.+++.-...+.....|.+.-..+-..++++.+|.+-.--
T Consensus 214 ~~~~~~~P~lL~~li~~~~~~~~~~~~g~~~a~~lf~~~~l~~l~~~~~~~~~~~~g~r~R~al~~~IY~K~L~ls~~~~ 293 (1381)
T KOG0054|consen 214 DLAGFVGPLLLKKLILFFSEKRLPLNNGYLLAVLLFLASLLQSLLLHQYFFVSFRVGMRLRSALISAIYRKALRLSNSAR 293 (1381)
T ss_pred HHHccccHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHHHHHHhhhcCchhhc
Confidence 333667777766444332222 1122233344444444555555555555666788889989999999999999988777
Q ss_pred cccccccchhHHhcchhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 1019 DATPSGRIINRASTDQSAVDLSIPALIGSFAFSIIRVLGVIGVMSLVAWQVFIVFIPVIATCIWYQQYYISSARELSRLV 1098 (1495)
Q Consensus 1019 d~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~ip~~~~~~~~~~~y~~~~r~l~rl~ 1098 (1495)
..+..|+|+|-++.|.+.++...++ +..+...-++++..+.++...--+-+++.+.++++++-++.+..+..+..++..
T Consensus 294 ~~~t~G~ivNlms~D~~ri~~~~~~-~h~~w~~Plqi~~~l~lLy~~LG~sa~~G~~~~il~~p~n~~~a~~~~~~q~~~ 372 (1381)
T KOG0054|consen 294 GETTVGEIVNLMSVDAQRLSDAACF-LHLLWSAPLQIILALYLLYGLLGPSALAGVAVMVLLIPLNSFLAKKIAKFQKRL 372 (1381)
T ss_pred cCCCcchhhhhhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888999999999999999986653 344444444444444433332222233444455666667777777788888888
Q ss_pred HHhhhhHHHHHHHhhcchHHHHhhccHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 000452 1099 GVCKAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGYSRPTFHVAAAMEWLGFRLDMLSNITFAFSLVFLISIPKG 1178 (1495)
Q Consensus 1099 ~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~~~~~~~~~~~~~~~~~ 1178 (1495)
...+.......+|.++|+++||.|+||+.|.++..+..+.-.+.............+.......++.+......+....+
T Consensus 373 m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~~~~~~~~~~~p~lv~~~tF~~~v~~~~~ 452 (1381)
T KOG0054|consen 373 MKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSALNSFLNFFSPVLVSVVTFVVFVLLLGN 452 (1381)
T ss_pred hhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCc
Confidence 88999999999999999999999999999999998887766555544444444433333333332222222212213355
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCCCCCccccCCCCCCCCCcceEEEeeeeEEeC
Q 000452 1179 FIDPAIAGLAVTYGLTLNNLQAMLIWLACQMENKIISVERIFQYTCIPSEPPLEIEESRPNHSWPSHGKIDLRDLQVRYA 1258 (1495)
Q Consensus 1179 ~~~~~~~gl~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nv~~~Y~ 1258 (1495)
..+|..+-.++++.-.+...+..+......+-+..+|++|+.+|+..++..+...+. .+.-+.+-.|+++|.+|++.
T Consensus 453 ~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~---~~~~~~~~~i~i~~~sfsW~ 529 (1381)
T KOG0054|consen 453 LLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPDSVER---SPDEAGENAIEIKNGSFSWD 529 (1381)
T ss_pred cccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCcccccc---CCCCCCCceEEEeeeeEecC
Confidence 678878888888888888888888888888888999999999999766544332221 11223445799999999998
Q ss_pred CC-CCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccEEEcccCcCCCC
Q 000452 1259 PH-MPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSIIPQDPVMFEG 1337 (1495)
Q Consensus 1259 ~~-~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~isiIpQdp~LF~G 1337 (1495)
++ .++.|+||||+|++|+.+||||++|||||||+++++|.++..+|++.++|. ++|+||.|++|+|
T Consensus 530 ~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs-------------iaYv~Q~pWI~ng 596 (1381)
T KOG0054|consen 530 SESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS-------------VAYVPQQPWIQNG 596 (1381)
T ss_pred CCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe-------------EEEeccccHhhCC
Confidence 74 445999999999999999999999999999999999999999999999984 9999999999999
Q ss_pred cHHHhcCCCCCCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCeEEEEcCCCCCCH
Q 000452 1338 TVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDT 1417 (1495)
Q Consensus 1338 TIR~NLdp~~~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALLr~~~ILiLDEaTsslD~ 1417 (1495)
||||||.+..+++++...++++.|+|.+.++.+|.|-.|.|||+|.|||||||||++||||++++++|.+||+|-|+||+
T Consensus 597 TvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDa 676 (1381)
T KOG0054|consen 597 TVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDA 676 (1381)
T ss_pred cHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH-HHHHHHHhcCCcEEEEEecCchhhhccCEEEEEeCcEEEEecChhHHhhcCCChHHHHHHHHh
Q 000452 1418 ATDNL-IQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSFSQLVAEYT 1485 (1495)
Q Consensus 1418 ~Td~~-Iq~~Ir~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~ivE~gsp~~Ll~~~~s~f~~lv~~~~ 1485 (1495)
++.+. .+++|+...+++|+|.|||.++.+.+||+|+||++|+|+|.|+++||++ .++.|.++..+..
T Consensus 677 hvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~-~~~~~~~l~~~~~ 744 (1381)
T KOG0054|consen 677 HVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLK-SGGDFAELAHEEE 744 (1381)
T ss_pred hhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHh-cchhHHHHhhccc
Confidence 99774 5678988889999999999999999999999999999999999999996 4678888855433
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-57 Score=527.04 Aligned_cols=520 Identities=20% Similarity=0.292 Sum_probs=412.7
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCcc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 000452 314 TLATYVGPYLIDTLVQYLSGKRDFE---NEGYALVSAFCVAKLVECLCQRFFVFRLEQLGIRLRAALIAMIYNKGLKLSS 390 (1495)
Q Consensus 314 ~~~~~~~P~ll~~li~~~~~~~~~~---~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~g~rir~~L~~~iy~K~L~ls~ 390 (1495)
-.+....|++++..++.+...+..+ ......+.+++++.+..+.+.-...+....+..++--.....+|+..+.++.
T Consensus 43 K~l~v~vp~~~~~~id~l~~~~~~~a~~~~~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~ 122 (591)
T KOG0057|consen 43 KILNVQVPFIFKLIIDGLNDADGNPAVLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDL 122 (591)
T ss_pred hHhheehHHHHHHHHhhhhhcccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 4556678999999999886332211 2234556667777777888877777777788888888888999999999999
Q ss_pred chhcCCCHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 000452 391 QAKQGNTSGEIINFMTVDAERVAELSW-YIHDPWLFLFEVALSFLILYKSLGIASVA-AFFGTVIFMLVNVPLSTVQEKF 468 (1495)
Q Consensus 391 ~~~~~~~~G~i~nl~s~D~~~i~~~~~-~~~~~w~~pl~i~~~~~lL~~~lG~~~l~-gl~~~i~~~~~~~~~~~~~~~~ 468 (1495)
+...+..+|++.+.|..-...|.++.. .+..+....+++.+....+|...|.+..+ .+..+.....+...+.....++
T Consensus 123 ~~~~~~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~f 202 (591)
T KOG0057|consen 123 SFFLSRGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWRNRF 202 (591)
T ss_pred HhhcCCCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhHHHHH
Confidence 999999999999999988888887654 44566667788888888999999976433 3344444555666678888999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-HHH-HHHHHHHHH
Q 000452 469 QNELMKSKDERMKATSEILRNMRILKLQGWELKFLSKTIDL-RKSESGWLKRCLYTSSITSFVFWC-APT-FVSVITFGT 545 (1495)
Q Consensus 469 ~~~~m~~~D~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~-R~~E~~~l~~~~~~~~~~~~~~~~-~p~-~v~~~~f~~ 545 (1495)
++++.++.|+-.+..-+.|.|-.+||.|+-|+.-.++.... ++.|-..++....+ ++.++..-. ..+ ++.++..+.
T Consensus 203 R~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl-~~lnfgQ~~iFsv~~~~im~l~~ 281 (591)
T KOG0057|consen 203 RKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSL-AFLNFGQKAIFSVALTFIMVLGS 281 (591)
T ss_pred HHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHH-HHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999877765432 33343333222222 222221110 111 111112222
Q ss_pred HHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCCCCCCcccEEEEeeEE
Q 000452 546 CILLKVPLESGKVLSAIATFRLLQILIYKLPAIISMTIQTKVSLQRIASFFCLDELQPDLVEKQPRGSSETAIEIADGNF 625 (1495)
Q Consensus 546 ~~~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~~~~~~~~~~~~~i~~~~~~~ 625 (1495)
.-.....+|.+...-.-+++..|..|+..|......+.|+..-+.-....++.++...+ ...|....+..|+++|++|
T Consensus 282 ~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~~--~~~~i~~~~~~I~F~dV~f 359 (591)
T KOG0057|consen 282 NGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQE--AALPIELFGGSIEFDDVHF 359 (591)
T ss_pred hhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhhh--ccCCcccCCCcEEEEeeEE
Confidence 22345679999999999999999999999999999998888877666544333221111 0122223345699999999
Q ss_pred EecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe-------------EEEEccCCcc
Q 000452 626 SWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------KAYVAQSPWI 692 (1495)
Q Consensus 626 ~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~-------------~ayv~Q~~~l 692 (1495)
+|.+ ++++|+++||+|++||++||+|+|||||||++++|++..+ .+|+|.+||. +|||||+..|
T Consensus 360 ~y~~--k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~L 436 (591)
T KOG0057|consen 360 SYGP--KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVL 436 (591)
T ss_pred EeCC--CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccc
Confidence 9973 4579999999999999999999999999999999999999 9999999994 6999999999
Q ss_pred cCccHHHHHhcCCC-CCHHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHHHHHhccCCCEeEecCcCC
Q 000452 693 QSGKIEDNILFGKE-MDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFS 771 (1495)
Q Consensus 693 ~~~ti~enI~fg~~-~~~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~s 771 (1495)
||.||.+||.+|.+ ...++..++++..++++-+..+|+|++|.+||+|..|||||||||+||||+..||+|+++|||||
T Consensus 437 FndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS 516 (591)
T KOG0057|consen 437 FNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATS 516 (591)
T ss_pred cchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCccc
Confidence 99999999999987 46677778888999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHHHHhCCCEEEEEecCCCccccCCEEEEEeCCEEEEecChHHHHhcCCchhHHHH
Q 000452 772 AVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVINSGTDFMELVD 840 (1495)
Q Consensus 772 aLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~l~~ 840 (1495)
+||.++++.+++. +.....+||+|+|-|+++.++.||+|+++++|++.+.|+++|++.+.+.+.++..
T Consensus 517 ~LD~~TE~~i~~~-i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~~s~~~~~~w~ 584 (591)
T KOG0057|consen 517 ALDSETEREILDM-IMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLAPSELYADLWT 584 (591)
T ss_pred ccchhhHHHHHHH-HHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhhhhhHHHHHhc
Confidence 9999999999975 4557789999999999999999999999999999999999999997666666653
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-58 Score=591.38 Aligned_cols=199 Identities=19% Similarity=0.299 Sum_probs=166.3
Q ss_pred ceEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhccc
Q 000452 1246 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRL 1325 (1495)
Q Consensus 1246 g~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i 1325 (1495)
..|+++||+++|+++ +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+++ +.++
T Consensus 507 ~~L~~~~ls~~y~~~-~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~i 574 (718)
T PLN03073 507 PIISFSDASFGYPGG-PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVRM 574 (718)
T ss_pred ceEEEEeeEEEeCCC-CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------ceeE
Confidence 469999999999643 3599999999999999999999999999999999999999999999875 3579
Q ss_pred EEEcccCcCCCCcHHHhcC-----CCCCCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHc
Q 000452 1326 SIIPQDPVMFEGTVRSNVD-----PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLL 1400 (1495)
Q Consensus 1326 siIpQdp~LF~GTIR~NLd-----p~~~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALL 1400 (1495)
+|+||++. ..-++.+|.. .+...+++++.++|+..++.+.... .....||||||||++||||++
T Consensus 575 gyv~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~----------~~~~~LSgGqkqRvaLAraL~ 643 (718)
T PLN03073 575 AVFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL----------QPMYTLSGGQKSRVAFAKITF 643 (718)
T ss_pred EEEecccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhc----------CCccccCHHHHHHHHHHHHHh
Confidence 99999973 2224555421 1224567889999999998642211 123579999999999999999
Q ss_pred cCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-cCEEEEEeCcEEE-EecChhHH
Q 000452 1401 KRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGLIE-EYDSPRKL 1469 (1495)
Q Consensus 1401 r~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~~-~DrIlVL~~G~iv-E~gsp~~L 1469 (1495)
++|++|||||||++||..+...+.+.+++. + .|||+|||+++.+.. ||+|++|++|+++ ..|++++.
T Consensus 644 ~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~-~-gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~ 712 (718)
T PLN03073 644 KKPHILLLDEPSNHLDLDAVEALIQGLVLF-Q-GGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDY 712 (718)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 999999999999999999999999998875 3 599999999999875 9999999999998 45776654
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-55 Score=607.40 Aligned_cols=470 Identities=16% Similarity=0.158 Sum_probs=359.4
Q ss_pred HHHHHHHHHHHHHHHhcCCcchhcCCCHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 371 IRLRAALIAMIYNKGLKLSSQAKQGNTSGEIINFMTVDAERVAELSW-YIHDPWLFLFEVALSFLILYKSLGIASVAAFF 449 (1495)
Q Consensus 371 ~rir~~L~~~iy~K~L~ls~~~~~~~~~G~i~nl~s~D~~~i~~~~~-~~~~~w~~pl~i~~~~~lL~~~lG~~~l~gl~ 449 (1495)
.+....+...+|++.++.+...+++++.|+|+|+++.|++.+.+.+. .+..+....+.++.++++++....+..++.+.
T Consensus 1027 ~~~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~~~~~~p~~~~~~i~ 1106 (1560)
T PTZ00243 1027 RRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVTSASQPFVLVALVP 1106 (1560)
T ss_pred HHHHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445677889999999999999999999999999999999998654 44455555666666555554433322222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 450 GTVIFMLVNVPLSTVQEKFQNELMKSKDERMKATSEILRNMRILKLQGWELKFLSKTIDLRKSESGWLKRCLYTSSITSF 529 (1495)
Q Consensus 450 ~~i~~~~~~~~~~~~~~~~~~~~m~~~D~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~ 529 (1495)
++++...+...+.+..+..++.....++.-...++|.++|+++||.|++|+.|.++..+.-+...+...+......+...
T Consensus 1107 ~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~w~~~ 1186 (1560)
T PTZ00243 1107 CGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSYLENVANRWLGV 1186 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222223333444455555556666777789999999999999999999998888755444333322221111111111
Q ss_pred HH-HHH-HHHHHHHHHHHHH--HhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-c
Q 000452 530 VF-WCA-PTFVSVITFGTCI--LLKVPLESGKVLSAIATFRLLQILIYKLPAIISMTIQTKVSLQRIASFFCLDELQP-D 604 (1495)
Q Consensus 530 ~~-~~~-p~~v~~~~f~~~~--~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~-~ 604 (1495)
.. ... ...+.++.++.+. .....++++.+..++.+...+..|+..+...+..+.++++|++||.+|++..+.++ .
T Consensus 1187 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~~e~~~ 1266 (1560)
T PTZ00243 1187 RVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYYTDEVPHEDMP 1266 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence 11 111 1111122222222 22345788888888888888999999999999999999999999999996322110 0
Q ss_pred c-----------------------c-cCC-----CCCCCcccEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecC
Q 000452 605 L-----------------------V-EKQ-----PRGSSETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTV 655 (1495)
Q Consensus 605 ~-----------------------~-~~~-----~~~~~~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~ 655 (1495)
. . ... |.....+.|+++|++|+|+.+ .+++|+|+||+|++||++||||++
T Consensus 1267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~-~~~vL~~vsf~I~~GekVaIVGrT 1345 (1560)
T PTZ00243 1267 ELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREG-LPLVLRGVSFRIAPREKVGIVGRT 1345 (1560)
T ss_pred cccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCC-CCceeecceEEECCCCEEEEECCC
Confidence 0 0 000 111123569999999999743 356999999999999999999999
Q ss_pred CccHHHHHHHHhCCCCCCCcEEEEcCe-------------EEEEccCCcccCccHHHHHhcCCCCCHHHHHHHHHHhCcH
Q 000452 656 GSGKSSLLSCILGEVPKISGTLKLCGT-------------KAYVAQSPWIQSGKIEDNILFGKEMDRERYNAVLDACSLE 722 (1495)
Q Consensus 656 GsGKSTLl~~llG~~~~~~G~v~~~g~-------------~ayv~Q~~~l~~~ti~enI~fg~~~~~~~~~~vl~~~~l~ 722 (1495)
|||||||+++|+|+++|++|+|.+||. ++||||+|.+|++||||||..+.++++++..++++.|+++
T Consensus 1346 GSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a~l~ 1425 (1560)
T PTZ00243 1346 GSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLR 1425 (1560)
T ss_pred CCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcccCCCHHHHHHHHHHCCCh
Confidence 999999999999999999999999984 5999999999999999999887788899999999999999
Q ss_pred HHHhhcCCCCcccccCCCCccchHHHHHHHHHHHhccC-CCEeEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEecC
Q 000452 723 KDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQD-ADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQ 801 (1495)
Q Consensus 723 ~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~-~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH~ 801 (1495)
+.++.+|+|.+|.+||+|.|||||||||++||||++++ |+|+|||||||+||+++.+.|. +.+....+++|+|+|+|+
T Consensus 1426 ~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq-~~L~~~~~~~TvI~IAHR 1504 (1560)
T PTZ00243 1426 ERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQ-ATVMSAFSAYTVITIAHR 1504 (1560)
T ss_pred HHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHH-HHHHHHCCCCEEEEEecc
Confidence 99999999999999999999999999999999999996 8999999999999999988875 556666789999999999
Q ss_pred CCccccCCEEEEEeCCEEEEecChHHHHhc-CCchhHHHHHH
Q 000452 802 VEFLPAADLVLVIKDGKITQAGKYTDVINS-GTDFMELVDAH 842 (1495)
Q Consensus 802 ~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~l~~~~ 842 (1495)
++.+..||+|++|++|+|++.|+++|++++ ++.|.+++...
T Consensus 1505 l~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~ 1546 (1560)
T PTZ00243 1505 LHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEAL 1546 (1560)
T ss_pred HHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHh
Confidence 999999999999999999999999999974 67788877653
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-57 Score=557.13 Aligned_cols=483 Identities=23% Similarity=0.352 Sum_probs=346.3
Q ss_pred cEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcC--eEEEEccCCcccC
Q 000452 617 AIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG--TKAYVAQSPWIQS 694 (1495)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g--~~ayv~Q~~~l~~ 694 (1495)
.|.++|++++|+ ++++++|+||++.+|++++|||+|||||||||++|.|+..|++|+|...+ +++|++|++....
T Consensus 3 ~i~~~~ls~~~g---~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~ 79 (530)
T COG0488 3 MITLENLSLAYG---DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDP 79 (530)
T ss_pred eEEEeeeEEeeC---CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCC
Confidence 588999999994 57899999999999999999999999999999999999999999999987 6999999998875
Q ss_pred -ccHHHHHhcCCCCC---HHHHHHHH---------------------HHhCcHHH----HhhcCCCCcccccCCCCccch
Q 000452 695 -GKIEDNILFGKEMD---RERYNAVL---------------------DACSLEKD----LEILSFGDQTVVGERGINLSG 745 (1495)
Q Consensus 695 -~ti~enI~fg~~~~---~~~~~~vl---------------------~~~~l~~d----l~~l~~gd~t~ig~~g~~LSG 745 (1495)
.||.|.+..+...- ..++++.. +...++.+ +..+...+ . .....+|||
T Consensus 80 ~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~--~-~~~~~~LSG 156 (530)
T COG0488 80 EKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPD--E-DRPVSSLSG 156 (530)
T ss_pred CccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCc--c-cCchhhcCH
Confidence 49999998774311 01111111 01111122 22232222 2 467789999
Q ss_pred HHHHHHHHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEecCCCcccc-CCEEEEEeCCEEE-Eec
Q 000452 746 GQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPA-ADLVLVIKDGKIT-QAG 823 (1495)
Q Consensus 746 GQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~-~~g 823 (1495)
|||.||+|||||..+||++||||||++||..+..++- +.+. ..+| |+|+||||.+||.. |++|+.+++|++. +.|
T Consensus 157 G~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe-~~L~-~~~g-tviiVSHDR~FLd~V~t~I~~ld~g~l~~y~G 233 (530)
T COG0488 157 GWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLE-DYLK-RYPG-TVIVVSHDRYFLDNVATHILELDRGKLTPYKG 233 (530)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHH-HHHH-hCCC-cEEEEeCCHHHHHHHhhheEEecCCceeEecC
Confidence 9999999999999999999999999999999988874 3343 2356 99999999999987 9999999999876 788
Q ss_pred ChHHHHhcCCchhHHHHHHHhhhcccccccCCCCCCCCCCCCCCCCCCcccccccccccccccccccccccchhhhhhHH
Q 000452 824 KYTDVINSGTDFMELVDAHKQALSTLDSIEGRPLSEKGSANGENDGTSATDGVVKEVENKEVQNDREDKVAEPQRQLVQE 903 (1495)
Q Consensus 824 ~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 903 (1495)
+|+.+.+....-.+.. . .. .+...+..++
T Consensus 234 ny~~~~~~r~~~~~~~--------------------------------------------~----~~---~~~~~~~~~~ 262 (530)
T COG0488 234 NYSSYLEQKAERLRQE--------------------------------------------A----AA---YEKQQKELAK 262 (530)
T ss_pred CHHHHHHHHHHHHHHH--------------------------------------------H----HH---HHHHHHHHHH
Confidence 8888764321000000 0 00 0000000000
Q ss_pred HHHhhcCchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhcccCCCCCCCcchhHHHHHHHHHHHHHHHH
Q 000452 904 EEREKGKVEFSVYWKYITAAYGGVLVPFILLAQTLFQILQIASNYWIAWATPASKDIKPRVTGSMLLIVFVALAFGSSFC 983 (1495)
Q Consensus 904 e~~~~g~v~~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~ 983 (1495)
++ .++.. ...
T Consensus 263 ~~------------~~i~r------------------------------~~~---------------------------- 272 (530)
T COG0488 263 EQ------------EWIRR------------------------------GKA---------------------------- 272 (530)
T ss_pred HH------------HHHHH------------------------------HHh----------------------------
Confidence 00 00000 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccccccccccchhHHhcchhHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 000452 984 ILARSTLLATAGYKTATLLFNKMHYCIFRAPMSFFDATPSGRIINRASTDQSAVDLSIPALIGSFAFSIIRVLGVIGVMS 1063 (1495)
Q Consensus 984 ~~~~~~~~~~~~~~~s~~l~~~ll~~ll~ap~~ffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~~~~~~~~~ 1063 (1495)
T Consensus 273 -------------------------------------------------------------------------------- 272 (530)
T COG0488 273 -------------------------------------------------------------------------------- 272 (530)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcchHHHHhhccHHHHHHHHHHHHHHhhchH
Q 000452 1064 LVAWQVFIVFIPVIATCIWYQQYYISSARELSRLVGVCKAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGYSRPT 1143 (1495)
Q Consensus 1064 ~~~~~~~~v~ip~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~ 1143 (1495)
...+++
T Consensus 273 -----------------------~~~~~k--------------------------------------------------- 278 (530)
T COG0488 273 -----------------------AASKAK--------------------------------------------------- 278 (530)
T ss_pred -----------------------ccchHH---------------------------------------------------
Confidence 000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-
Q 000452 1144 FHVAAAMEWLGFRLDMLSNITFAFSLVFLISIPKGFIDPAIAGLAVTYGLTLNNLQAMLIWLACQMENKIISVERIFQY- 1222 (1495)
Q Consensus 1144 ~~~~~~~~wl~~rl~~l~~~~~~~~~~~~~~~~~~~~~~~~~gl~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~- 1222 (1495)
..+..+...+|+.+-
T Consensus 279 ----------------------------------------------------------------~a~sr~k~l~k~~~~~ 294 (530)
T COG0488 279 ----------------------------------------------------------------KAKSRIKRLEKLEARL 294 (530)
T ss_pred ----------------------------------------------------------------HHHHHHHHHHHHHhhh
Confidence 000000111111110
Q ss_pred -hcCCCCCCCccc-cCCCCCCCCCcceEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccc
Q 000452 1223 -TCIPSEPPLEIE-ESRPNHSWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVE 1300 (1495)
Q Consensus 1223 -~~~~~E~~~~~~-~~~~~~~wp~~g~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~e 1300 (1495)
...|.+...... ...++..-+.+-.++++|+++.|.++ .++++++||.|.+|++||||||+|+|||||+++|.|...
T Consensus 295 ~~~~~~~~~~~~~~~f~~~~~~~g~~vl~~~~~~~~y~~~-~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~ 373 (530)
T COG0488 295 AEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGG-RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELG 373 (530)
T ss_pred hhcccccccccceeeccCCcccCCCeeEEEeccccccCCC-ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcc
Confidence 000111000000 00111111223469999999999766 569999999999999999999999999999999999999
Q ss_pred CCccEEEEcCEeCCCCCHHHHhcccEEEcccC-cCCC-CcHHHhcCCCC-CCCHHHHHHHHHHcCCcHHHHhccCCcccc
Q 000452 1301 PAAGQILIDGIDISLIGLHDLRTRLSIIPQDP-VMFE-GTVRSNVDPLE-EYTDEQIWEALDKCQLGDEVRKKEGKLDSK 1377 (1495)
Q Consensus 1301 p~~G~I~IDG~dI~~i~l~~LR~~isiIpQdp-~LF~-GTIR~NLdp~~-~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~ 1377 (1495)
|.+|+|.+.- .-++||.+|+- .++. .|+-+++.... +..+.++...|.+.++...-. .++
T Consensus 374 ~~~G~v~~g~-----------~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~------~~~ 436 (530)
T COG0488 374 PLSGTVKVGE-----------TVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQ------EKP 436 (530)
T ss_pred cCCceEEeCC-----------ceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHH------hCc
Confidence 9999999863 13599999998 4443 38999986443 444889999999999864432 223
Q ss_pred cccCCCCCCchHHHHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-cCEEEEEe
Q 000452 1378 VTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVID-SDMVLLLS 1456 (1495)
Q Consensus 1378 v~e~G~nLS~GQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~~-~DrIlVL~ 1456 (1495)
| ..||||||-|+.||+.++.+|.+|||||||..||.+|-..+.++|.+. +-|||+|+|+-..+.. |++|++++
T Consensus 437 v----~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f--~Gtvl~VSHDr~Fl~~va~~i~~~~ 510 (530)
T COG0488 437 V----GVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF--EGTVLLVSHDRYFLDRVATRIWLVE 510 (530)
T ss_pred h----hhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhcceEEEEc
Confidence 3 469999999999999999999999999999999999999999999987 6799999999999986 99999999
Q ss_pred CcEEEEe-cChhHHhhc
Q 000452 1457 HGLIEEY-DSPRKLLEN 1472 (1495)
Q Consensus 1457 ~G~ivE~-gsp~~Ll~~ 1472 (1495)
+ ++.++ |.+++..+.
T Consensus 511 ~-~~~~~~g~y~~y~~~ 526 (530)
T COG0488 511 D-KVEEFEGGYEDYLEQ 526 (530)
T ss_pred C-ceeEcCCCHHHHHHh
Confidence 9 88888 788877754
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-55 Score=557.41 Aligned_cols=512 Identities=16% Similarity=0.136 Sum_probs=376.7
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 294 AMFR-SVWKDVLLTALVAIVCTLATYVGPYLIDTLVQYLSGKRDFENEGYALVSAFCVAKLVECLCQRFFVFRLEQLGIR 372 (1495)
Q Consensus 294 al~~-~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~g~r 372 (1495)
.+++ .+|+.+++.+++.++..++..+.|++++.+++...... .. ...+.+++++ +..++.....+...+.+.+
T Consensus 10 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~--~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 83 (555)
T TIGR01194 10 ALLRSPFPAITAFSIALGLAGGLAIIALLASINNAIHEENFLG--QG-SLFSFGGLCL---LALLFRIGADIFPAYAGMH 83 (555)
T ss_pred HHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc--ch-HHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 3667 78888999999999999999999999988876321110 01 1111111222 2233444445556778889
Q ss_pred HHHHHHHHHHHHHhcCCcchhcCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 373 LRAALIAMIYNKGLKLSSQAKQGNTSGEIINFMTVDAERVAELSWYIHDPWLFLFEVALSFLILYKSLGIASVAAFFGTV 452 (1495)
Q Consensus 373 ir~~L~~~iy~K~L~ls~~~~~~~~~G~i~nl~s~D~~~i~~~~~~~~~~w~~pl~i~~~~~lL~~~lG~~~l~gl~~~i 452 (1495)
+...++..+|+|.++++.....++++|++++++++|++.+.++...+..+....+.+++++++++..-...+++.++.+.
T Consensus 84 ~~~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~li~l~~~~ 163 (555)
T TIGR01194 84 IIANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLFIFPPIAIALAIFFFCIAYLAYLSVPMFAITISAII 163 (555)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 99999999999999999999899999999999999999999876555555555555555555554333223333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 453 IFMLVNVPLSTVQEKFQNELMKSKDERMKATSEILRNMRILKLQGWEL--KFLSKTIDLRKSESGWLKRCLYTSSITSFV 530 (1495)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~m~~~D~R~~~~~E~L~~ir~IK~~~wE~--~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~ 530 (1495)
+.+.+..+..++.++...+..+..++..+.+.|.++|++++|.++.++ ...+++.+..++-.+...+..........+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (555)
T TIGR01194 164 IGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILIFIAAENF 243 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445556666777778888888999999999999999999854 333333322221111111111111111111
Q ss_pred HHHHHHHHHHHHHHHHHH---hcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc--
Q 000452 531 FWCAPTFVSVITFGTCIL---LKVPLESGKVLSAIATFRLLQILIYKLPAIISMTIQTKVSLQRIASFFCLDELQPDL-- 605 (1495)
Q Consensus 531 ~~~~p~~v~~~~f~~~~~---~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~-- 605 (1495)
...... +.++.+++ ..+.++.+.+++++.+...+..|+..+...+..+.++++|++||.++++.++.++..
T Consensus 244 ~~~~~~----~~~~~~~~~~~~~~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~~ 319 (555)
T TIGR01194 244 GQLLFF----LLIGCALFAAAMFASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELE 319 (555)
T ss_pred HHHHHH----HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc
Confidence 111111 11111111 124789999999999999999999999999999999999999999998632211100
Q ss_pred -ccCC-----CCCCCcccEEEEeeEEEecCCC--CCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEE
Q 000452 606 -VEKQ-----PRGSSETAIEIADGNFSWDISS--HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTL 677 (1495)
Q Consensus 606 -~~~~-----~~~~~~~~i~~~~~~~~~~~~~--~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v 677 (1495)
.... +.......|+++|++|+|+..+ .+++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|
T Consensus 320 ~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i 399 (555)
T TIGR01194 320 LSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEI 399 (555)
T ss_pred ccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence 0000 1111234699999999997431 2469999999999999999999999999999999999999999999
Q ss_pred EEcCe-------------EEEEccCCcccCccHHHHHhcCCCCCHHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccc
Q 000452 678 KLCGT-------------KAYVAQSPWIQSGKIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLS 744 (1495)
Q Consensus 678 ~~~g~-------------~ayv~Q~~~l~~~ti~enI~fg~~~~~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LS 744 (1495)
.++|. ++||+|+|++|++|+++|+ ..+.++++.+++++.++++++++.+|+|++|. .+||
T Consensus 400 ~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~--~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~-----~~LS 472 (555)
T TIGR01194 400 LLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE--GEHASLDNAQQYLQRLEIADKVKIEDGGFSTT-----TALS 472 (555)
T ss_pred EECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc--ccchhHHHHHHHHHHcCCchhhcccccccCCc-----ccCC
Confidence 99984 4899999999999999995 33456778889999999999999999999983 7999
Q ss_pred hHHHHHHHHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHH-hCCCEEEEEecCCCccccCCEEEEEeCCEEEEe
Q 000452 745 GGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL-LNSKTVLYVTHQVEFLPAADLVLVIKDGKITQA 822 (1495)
Q Consensus 745 GGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~~~~tvIlvTH~~~~l~~~d~i~~l~~G~i~~~ 822 (1495)
||||||++||||++++|+|+|||||||+||+++++.+.+.++... .+++|+|+|||+++.+..||+|++|++|++++.
T Consensus 473 gGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 473 TGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVKD 551 (555)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999999987665443 468999999999998888999999999999863
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-56 Score=569.75 Aligned_cols=511 Identities=14% Similarity=0.088 Sum_probs=402.2
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHhhcccCCCCCCCcch----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 929 VPFILLAQTLFQILQIASNYWIAWATPASKDIKPRVTG----SMLLIVFVALAFGSSFCILARSTLLATAGYKTATLLFN 1004 (1495)
Q Consensus 929 ~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~----~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~ 1004 (1495)
+.+.+++.++...+.+..+++.....+.....+. ... ..++.+++++.++..+..++...+......+..+.+|+
T Consensus 98 l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~-~~f~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~ 176 (659)
T TIGR00954 98 LILIAFLLVSRTYLSVYVATLDGQIESSIVRRSP-RNFAWILFKWFLIAPPASFINSAIKYLLKELKLRFRVRLTRYLYS 176 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455566677788888887755532111110 001 11222333344445555555666666667777788888
Q ss_pred HHHHHHccCCcccccccccccchhHHhcchhHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 000452 1005 KMHYCIFRAPMSFFDATPSGRIINRASTDQSAVDLSIPALIGSFAFSIIRVLGVIGVMSL-VAWQVFIVFIPVIATCIWY 1083 (1495)
Q Consensus 1005 ~ll~~ll~ap~~ffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~v~ip~~~~~~~~ 1083 (1495)
+.+++....++.|||. ++|++++|+++|++.+...+...+..++..++.+++.++++.. .+|.+.++++...++..++
T Consensus 177 ~~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~~~l~l~~l~~~~l~~~i 255 (659)
T TIGR00954 177 KYLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGSVGPAGLFAYLFATGVV 255 (659)
T ss_pred HHhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 8888877888899997 8999999999999999999999999999999999988887776 8898888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcchHHHHhhccHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Q 000452 1084 QQYYISSARELSRLVGVCKAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGYSRPTFHVAAAMEWLGFRLDMLSNI 1163 (1495)
Q Consensus 1084 ~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~~ 1163 (1495)
.+++.+..+++.+......+...+.+.|.++|+.+||+|+.|+.+.+++.+..++..+..........++....+++...
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~ 335 (659)
T TIGR00954 256 LTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNIVAKY 335 (659)
T ss_pred HHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999888888887777777777776666665432
Q ss_pred HHHHH----HHHHHHhcC----CCCCHHH-HHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCCCCC
Q 000452 1164 TFAFS----LVFLISIPK----GFIDPAI-AGLAVTY---GLTLNNLQAMLIWLACQMENKIISVERIFQYTCIPSEPPL 1231 (1495)
Q Consensus 1164 ~~~~~----~~~~~~~~~----~~~~~~~-~gl~l~~---~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~E~~~ 1231 (1495)
..... ....+.... |.++.|. ++..++| ..++...+..+.....++.....+.+|+.++.+.++|...
T Consensus 336 ~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~~~~ 415 (659)
T TIGR00954 336 TWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLDDVKS 415 (659)
T ss_pred HHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 11111 111122212 5677664 3434444 4455777888899999999999999999999875332110
Q ss_pred ------cccc---C-----CCC------CCCCCcceEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHH
Q 000452 1232 ------EIEE---S-----RPN------HSWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTL 1291 (1495)
Q Consensus 1232 ------~~~~---~-----~~~------~~wp~~g~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTL 1291 (1495)
..++ . +++ ......+.|+++||+++|+.+ +++|+|+||+|++||++||+|+||||||||
T Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~-~~il~~isl~i~~Ge~~~IvG~nGsGKSTL 494 (659)
T TIGR00954 416 GNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG-DVLIESLSFEVPSGNHLLICGPNGCGKSSL 494 (659)
T ss_pred ccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC-CeeeecceEEECCCCEEEEECCCCCCHHHH
Confidence 0000 0 000 000134679999999999644 469999999999999999999999999999
Q ss_pred HHHHhccccCCccEEEEcCEeCCCCCHHHHhcccEEEcccCcCCCCcHHHhcCCC--------CCCCHHHHHHHHHHcCC
Q 000452 1292 IQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNVDPL--------EEYTDEQIWEALDKCQL 1363 (1495)
Q Consensus 1292 l~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~isiIpQdp~LF~GTIR~NLdp~--------~~~sd~ei~~aL~~~~L 1363 (1495)
+++|.|+++|++|+|.+|+ |++++++||+|.+|++|+|+|+... .+.++++++++++++++
T Consensus 495 l~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l 563 (659)
T TIGR00954 495 FRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQL 563 (659)
T ss_pred HHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCC
Confidence 9999999999999999874 6789999999999999999999632 34678999999999999
Q ss_pred cHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCc
Q 000452 1364 GDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRI 1443 (1495)
Q Consensus 1364 ~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl 1443 (1495)
.+++.+ |.|+||..+ .+.+||||||||++||||++++|++||||||||+||+++++.+++.+++. ++|+|+||||+
T Consensus 564 ~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~--~~tvI~isH~~ 639 (659)
T TIGR00954 564 THILER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREF--GITLFSVSHRK 639 (659)
T ss_pred HHHHhh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEeCch
Confidence 999877 999999876 56799999999999999999999999999999999999999999999885 89999999999
Q ss_pred hhhhccCEEEEEeC
Q 000452 1444 TSVIDSDMVLLLSH 1457 (1495)
Q Consensus 1444 ~ti~~~DrIlVL~~ 1457 (1495)
+++..||+|++|+.
T Consensus 640 ~~~~~~d~il~l~~ 653 (659)
T TIGR00954 640 SLWKYHEYLLYMDG 653 (659)
T ss_pred HHHHhCCEEEEEeC
Confidence 99999999999973
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-55 Score=506.35 Aligned_cols=529 Identities=21% Similarity=0.263 Sum_probs=427.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 290 KLIKAMFRSVWKDVLLTALVAIVCTLATYVGPYLIDTLVQYLSGKRDFENEGYALVSAFCVAKLVECLCQRFFVFRLEQL 369 (1495)
Q Consensus 290 ~l~~al~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 369 (1495)
....+..-.+++.++..+++..+-.++...+|+++-++-|-+-...+.+ .-..+.++....+++..+++..-.+...|+
T Consensus 12 ~~~~a~l~~~r~a~~~v~lfS~~INiL~L~~~lyMLQVyDRVL~S~s~~-TLv~Ltvlal~ly~~~glLd~iR~~~l~Ri 90 (580)
T COG4618 12 NLLAAVLAANRRAFIGVGLFSAVINLLALTGPLYMLQVYDRVLPSRSVP-TLVMLTVLALGLYAFQGLLDAIRSRVLVRI 90 (580)
T ss_pred chhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhccCCCcc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777888888888888889999999998877777765543322 234455555667778888898899999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCcchhcCCCHHHHHHHHHHHHHHHHHHHH-----HhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 370 GIRLRAALIAMIYNKGLKLSSQAKQGNTSGEIINFMTVDAERVAELSW-----YIHDPWLFLFEVALSFLILYKSLGIAS 444 (1495)
Q Consensus 370 g~rir~~L~~~iy~K~L~ls~~~~~~~~~G~i~nl~s~D~~~i~~~~~-----~~~~~w~~pl~i~~~~~lL~~~lG~~~ 444 (1495)
|.++...|...||.-+++.....+......+.+ .|.+.+..|.. -+.+....|+-+.+++ ++.-.+|+.+
T Consensus 91 g~~lD~~L~~~v~~a~~~~~l~~~~~g~~~Q~L----rDL~qvR~Fltg~g~~A~fDaPW~P~yl~v~f-l~Hp~lG~~a 165 (580)
T COG4618 91 GERLDRQLNGPVFAASFSAPLLRRGSGDGLQPL----RDLDQVRQFLTGTGLTAFFDAPWMPLYLAVIF-LFHPWLGLIA 165 (580)
T ss_pred HHHHHHHhccHHHHHHHhhHHhhcCCCccccch----hhHHHHHHHHcCCCcchhcCCchHHHHHHHHH-HHHHHHHHHH
Confidence 999999999999999976555443322333443 48888888753 2334444576555553 4445789888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 445 VAAFFGTVIFMLVNVPLSTVQEKFQNELMKSKDERMKATSEILRNMRILKLQGWELKFLSKTIDLRKSESGWLKRCLYTS 524 (1495)
Q Consensus 445 l~gl~~~i~~~~~~~~~~~~~~~~~~~~m~~~D~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~ 524 (1495)
++|.++++.+..+|-..++ +--++-.+..-+|.......++|..+|+.+|+.+...+++.+....-+.+..+.....
T Consensus 166 ~~ga~iLv~la~ln~~~t~---~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~ 242 (580)
T COG4618 166 LAGAIILVVLALLNERATR---KPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRN 242 (580)
T ss_pred HHHHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 8888888887777765554 3455667777888899999999999999999999999999888877777666555444
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 000452 525 SITSFVFWCAPTFV--SVITFGTCILLKVPLESGKVLSAIATFRLLQILIYKLPAIISMTIQTKVSLQRIASFFCLDELQ 602 (1495)
Q Consensus 525 ~~~~~~~~~~p~~v--~~~~f~~~~~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~ 602 (1495)
.....+.-..-.+. .++..|.|..+.+++|+|.+++.--+..-.-.|+......+..+..++.|.+|++++|......
T Consensus 243 ~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~ 322 (580)
T COG4618 243 GAFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAA 322 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 33333322223333 3345667888899999999998877777778899999999999999999999999999764332
Q ss_pred cccccCCCCCCCcccEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcC-
Q 000452 603 PDLVEKQPRGSSETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG- 681 (1495)
Q Consensus 603 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g- 681 (1495)
... .+-+..+..+.++++++.-+ +.++|+|+|+||++++||.++|+||+|||||||.++|.|..+|.+|+|++||
T Consensus 323 ~~~---m~LP~P~g~L~Ve~l~~~PP-g~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga 398 (580)
T COG4618 323 AER---MPLPAPQGALSVERLTAAPP-GQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGA 398 (580)
T ss_pred cCC---CCCCCCCceeeEeeeeecCC-CCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecch
Confidence 221 22233456799999999664 4568999999999999999999999999999999999999999999999998
Q ss_pred ------------eEEEEccCCcccCccHHHHHh-cCCCCCHHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHH
Q 000452 682 ------------TKAYVAQSPWIQSGKIEDNIL-FGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQK 748 (1495)
Q Consensus 682 ------------~~ayv~Q~~~l~~~ti~enI~-fg~~~~~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 748 (1495)
.+||.||+-.+|.|||.|||. |+.+.|.++.-++.+..+.++-+-.+|+|++|.||+.|.+||||||
T Consensus 399 ~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQR 478 (580)
T COG4618 399 DLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQR 478 (580)
T ss_pred hhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHH
Confidence 479999999999999999994 8878899998888899999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEecCCCccccCCEEEEEeCCEEEEecChHHH
Q 000452 749 QRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDV 828 (1495)
Q Consensus 749 qRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~~~d~i~~l~~G~i~~~g~~~~l 828 (1495)
|||+||||+|.||.+++||||-|+||...+..+.+.+..-..+|.|+|+|||+++.+..+|+|++|+||++...|+.+|+
T Consensus 479 QRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eV 558 (580)
T COG4618 479 QRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEV 558 (580)
T ss_pred HHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHH
Confidence 99999999999999999999999999998888876555555679999999999999999999999999999999999998
Q ss_pred Hhc
Q 000452 829 INS 831 (1495)
Q Consensus 829 ~~~ 831 (1495)
+++
T Consensus 559 La~ 561 (580)
T COG4618 559 LAK 561 (580)
T ss_pred HHH
Confidence 753
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-57 Score=573.41 Aligned_cols=191 Identities=21% Similarity=0.312 Sum_probs=163.4
Q ss_pred eEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccE
Q 000452 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLS 1326 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~is 1326 (1495)
.++++|++++|.. ..|+++||+|++||++||+|+||||||||+++|.|+.+|++|+|.++ .+++
T Consensus 340 ~l~~~~ls~~~~~---~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------~~i~ 403 (590)
T PRK13409 340 LVEYPDLTKKLGD---FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKIS 403 (590)
T ss_pred EEEEcceEEEECC---EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------------eeEE
Confidence 5999999999964 25999999999999999999999999999999999999999999986 1599
Q ss_pred EEcccCcC-CCCcHHHhcCCC-CCC-CHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCC
Q 000452 1327 IIPQDPVM-FEGTVRSNVDPL-EEY-TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRR 1403 (1495)
Q Consensus 1327 iIpQdp~L-F~GTIR~NLdp~-~~~-sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALLr~~ 1403 (1495)
|+||++.+ ++.|+++|+... ..+ .+..+.++++..++.+...+. ...||||||||++|||||+++|
T Consensus 404 y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-----------~~~LSGGe~QRvaiAraL~~~p 472 (590)
T PRK13409 404 YKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLDKN-----------VKDLSGGELQRVAIAACLSRDA 472 (590)
T ss_pred EecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHhCC-----------cccCCHHHHHHHHHHHHHhcCC
Confidence 99999875 466999999632 222 234567788888886543322 2469999999999999999999
Q ss_pred CeEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecCchhhhc-cCEEEEEeCcEEEEecC
Q 000452 1404 KILMLDEATASVDTATDNLIQQSLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGLIEEYDS 1465 (1495)
Q Consensus 1404 ~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gs 1465 (1495)
+||||||||++||.++...+.+.|++..+ ++|||+|+|+++.+.. ||||++|++ ++...|+
T Consensus 473 ~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~ 536 (590)
T PRK13409 473 DLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKHGH 536 (590)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeee
Confidence 99999999999999999999999998743 7899999999998865 999999964 8877766
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-56 Score=506.48 Aligned_cols=529 Identities=19% Similarity=0.277 Sum_probs=394.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCCcchh-HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 308 LVAIVCTLATYVGPYLIDTLVQYLSGKRDFENE-GYALVSAFCVAK--LVECLCQRFFVFRLEQLGIRLRAALIAMIYNK 384 (1495)
Q Consensus 308 ~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~-g~~l~~~l~~~~--~~~~~~~~~~~~~~~~~g~rir~~L~~~iy~K 384 (1495)
++.++.-++....|.+.+.+++-+..+..+.+. .+.++...++-. ....+......|...++..--.-.+...+|++
T Consensus 222 ~ll~i~rli~~~~pi~~k~iv~~ltap~~~~~~~~~~~v~L~flqg~gtgsG~~~nlRtfLWi~VqQyttR~ie~~lfrH 301 (790)
T KOG0056|consen 222 FLLIIGRLINVSLPILSKWIVDELTAPDTFQYSLVFLYVFLKFLQGGGTGSGFLNNLRTFLWIPVQQYTTREIETELFRH 301 (790)
T ss_pred HHHHHHHHHhhhhHHhHHHHHHhhcCcchhhHHHHHHHHHHHHHhcCCccccchhhhheeEEEEhhHhHHHHHHHHHHHH
Confidence 344455556666799999999988744322221 122222222111 01123344444444455555555677889999
Q ss_pred HhcCCcchhcCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Q 000452 385 GLKLSSQAKQGNTSGEIINFMTVDAERVAELSWYIHDPWLFLFEVALSFLILYKSLGIASVAAFFGTVI---FMLVNVPL 461 (1495)
Q Consensus 385 ~L~ls~~~~~~~~~G~i~nl~s~D~~~i~~~~~~~~~~w~~pl~i~~~~~lL~~~lG~~~l~gl~~~i~---~~~~~~~~ 461 (1495)
.+.||....-++.+||+...|....+.+.-.-.-+.++-...+.++++++.. .+-.-...|+++.+. ..-+.+.+
T Consensus 302 lh~LSlrwHL~rrtGeVLrvmdrGtssvtll~yvVF~i~PtllDl~va~vYF--~~~Fn~wFgLIVfl~m~lY~~~Ti~i 379 (790)
T KOG0056|consen 302 LHNLSLRWHLNRRTGEVLRVMDRGTSSVTLLEYVVFQIGPTLLDLGVAMVYF--FIKFNIWFGLIVFLMMLLYCYVTIKI 379 (790)
T ss_pred HHhhceeeeecccccceeehhccCcchhhHHHHHHhhcccHHHHhhhhhhhh--hhhHhHHHHHHHHHHHHHHhheeeee
Confidence 9999998887888999988887666655522222233333444555554443 333334445544433 33333344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 462 STVQEKFQNELMKSKDERMKATSEILRNMRILKLQGWELK----FLSKTIDLRKSESGWLKRCLYTSSITSFVFWCAPTF 537 (1495)
Q Consensus 462 ~~~~~~~~~~~m~~~D~R~~~~~E~L~~ir~IK~~~wE~~----f~~~i~~~R~~E~~~l~~~~~~~~~~~~~~~~~p~~ 537 (1495)
.....++++++..+-.+-...-.+.|-|..++|.|+-|+. +.+.|.+..++|-+.+.....+......++-. -+
T Consensus 380 TeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~Ii~l--gl 457 (790)
T KOG0056|consen 380 TEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNGIIGL--GL 457 (790)
T ss_pred ehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh--HH
Confidence 5556777777766655555666788999999999998875 45556666666666554444333322222111 11
Q ss_pred HHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCCCCCCccc
Q 000452 538 VSVITFGTCILLKVPLESGKVLSAIATFRLLQILIYKLPAIISMTIQTKVSLQRIASFFCLDELQPDLVEKQPRGSSETA 617 (1495)
Q Consensus 538 v~~~~f~~~~~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~~~~~~~~~~~~~ 617 (1495)
.....+.+|.+..+.+|.|...-...++-.|..|++.+.....++....+-++|+.+.|++++...+.....|-....+.
T Consensus 458 l~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~P~a~pl~~~~G~ 537 (790)
T KOG0056|consen 458 LAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLPGAPPLKVTQGK 537 (790)
T ss_pred hhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcCCCCCCccccCCe
Confidence 22233445666677899999888888999999999999999999999999999999999776543332222233334568
Q ss_pred EEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe-------------EE
Q 000452 618 IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------KA 684 (1495)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~-------------~a 684 (1495)
|+++|++|+|++ .+|+|+||||++++|+.+|+|||+|+||||+++++.+.++..+|+|.+||. +|
T Consensus 538 i~fsnvtF~Y~p--~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IG 615 (790)
T KOG0056|consen 538 IEFSNVTFAYDP--GKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIG 615 (790)
T ss_pred EEEEEeEEecCC--CCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcC
Confidence 999999999974 579999999999999999999999999999999999999999999999994 69
Q ss_pred EEccCCcccCccHHHHHhcCCCC-CHHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHHHHHhccCCCE
Q 000452 685 YVAQSPWIQSGKIEDNILFGKEM-DRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADI 763 (1495)
Q Consensus 685 yv~Q~~~l~~~ti~enI~fg~~~-~~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~i 763 (1495)
.|||+.-+||.||..||.++++- ..|...++.++.++++.+-.+|+|+.|.+||||-.||||+||||++||++.++|.|
T Consensus 616 VVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~i 695 (790)
T KOG0056|consen 616 VVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSI 695 (790)
T ss_pred cccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcE
Confidence 99999999999999999999873 44556667889999999999999999999999999999999999999999999999
Q ss_pred eEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEecCCCccccCCEEEEEeCCEEEEecChHHHHhc-CCchhHHHHHH
Q 000452 764 YLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVINS-GTDFMELVDAH 842 (1495)
Q Consensus 764 llLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~l~~~~ 842 (1495)
++|||.|||||.++++.| +.++....+++|-|+|.|+++.+-+||.|++++||+|++.|+++|++++ ++.|.++.+++
T Consensus 696 IlLDEATSALDT~tER~I-QaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~rdgG~Ya~MWq~q 774 (790)
T KOG0056|consen 696 ILLDEATSALDTNTERAI-QAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKRDGGAYADMWQAQ 774 (790)
T ss_pred EEEcchhhhcCCccHHHH-HHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhccCCcHHHHHHHH
Confidence 999999999999999988 5677778889999999999999999999999999999999999999987 77888888654
Q ss_pred H
Q 000452 843 K 843 (1495)
Q Consensus 843 ~ 843 (1495)
.
T Consensus 775 q 775 (790)
T KOG0056|consen 775 Q 775 (790)
T ss_pred H
Confidence 3
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-53 Score=584.65 Aligned_cols=475 Identities=19% Similarity=0.178 Sum_probs=363.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcchhcCCCHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 365 RLEQLGIRLRAALIAMIYNKGLKLSSQAKQGNTSGEIINFMTVDAERVAELSW-YIHDPWLFLFEVALSFLILYKSLGIA 443 (1495)
Q Consensus 365 ~~~~~g~rir~~L~~~iy~K~L~ls~~~~~~~~~G~i~nl~s~D~~~i~~~~~-~~~~~w~~pl~i~~~~~lL~~~lG~~ 443 (1495)
...+.+.+.-..+...+|++.++.+...++++++|+|+|+++.|++.+.+... .+..+....+.+++.+++++...++.
T Consensus 948 ~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~p~l 1027 (1490)
T TIGR01271 948 PLVHTLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYI 1027 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777888888899999999999999999999999999999999997544 44555556666666666655544443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 444 SVAAFFGTVIFMLVNVPLSTVQEKFQNELMKSKDERMKATSEILRNMRILKLQGWELKFLSKTIDLRKSESGWLKRCLYT 523 (1495)
Q Consensus 444 ~l~gl~~~i~~~~~~~~~~~~~~~~~~~~m~~~D~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~ 523 (1495)
+++.+.++++++.+..+..+..+..++.....+........|.++|+.+||.|++|+.|.++..+.-+...+........
T Consensus 1028 ~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1107 (1490)
T TIGR01271 1028 FIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLST 1107 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33323333333333444444455556666777777889999999999999999999999888766544221111111111
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 000452 524 SSITSFV-FWCAPTFVSVITFGTCILLKVPLESGKVLSAIATFRLLQILIYKLPAIISMTIQTKVSLQRIASFFCLDELQ 602 (1495)
Q Consensus 524 ~~~~~~~-~~~~p~~v~~~~f~~~~~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~ 602 (1495)
..+.... ......++..+.+. .+.....+++.+-.+++++..+..++..+...+..+..+.+|++||.+|++.++..
T Consensus 1108 ~~wl~~~~~~i~~~~~~~~~~l--~~~~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e~ 1185 (1490)
T TIGR01271 1108 LRWFQMRIDIIFVFFFIAVTFI--AIGTNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEE 1185 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 1111111 01011111111111 11112345566666666667778888888888889999999999999999765432
Q ss_pred ccccc--------------C-C-CC-CCCcccEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHH
Q 000452 603 PDLVE--------------K-Q-PR-GSSETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSC 665 (1495)
Q Consensus 603 ~~~~~--------------~-~-~~-~~~~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~ 665 (1495)
+...+ . . |. -+..+.|+++|++|+|+.+ .+++|+|+||+|++||++||||++|||||||+++
T Consensus 1186 ~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~-~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~l 1264 (1490)
T TIGR01271 1186 PRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEA-GRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSA 1264 (1490)
T ss_pred ccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCC-CcceeeccEEEEcCCCEEEEECCCCCCHHHHHHH
Confidence 21000 0 0 10 0123579999999999743 4689999999999999999999999999999999
Q ss_pred HhCCCCCCCcEEEEcCe-------------EEEEccCCcccCccHHHHHhcCCCCCHHHHHHHHHHhCcHHHHhhcCCCC
Q 000452 666 ILGEVPKISGTLKLCGT-------------KAYVAQSPWIQSGKIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGD 732 (1495)
Q Consensus 666 llG~~~~~~G~v~~~g~-------------~ayv~Q~~~l~~~ti~enI~fg~~~~~~~~~~vl~~~~l~~dl~~l~~gd 732 (1495)
|+|+++ .+|+|.+||. ++||||+|.+|+|||||||....++++++..++++.|+|.+.++.+|.|.
T Consensus 1265 L~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GL 1343 (1490)
T TIGR01271 1265 LLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKL 1343 (1490)
T ss_pred HhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCcccc
Confidence 999997 8999999983 59999999999999999998766788999999999999999999999999
Q ss_pred cccccCCCCccchHHHHHHHHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEecCCCccccCCEEE
Q 000452 733 QTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVL 812 (1495)
Q Consensus 733 ~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~~~d~i~ 812 (1495)
+|.+|++|.+||||||||++|||||+++|+|+|||||||+||+.+.+.|.+ .++...+++|||+|||+++.+..||+|+
T Consensus 1344 dt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~-~L~~~~~~~TvI~IaHRl~ti~~~DrIl 1422 (1490)
T TIGR01271 1344 DFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRK-TLKQSFSNCTVILSEHRVEALLECQQFL 1422 (1490)
T ss_pred ccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHH-HHHHHcCCCEEEEEecCHHHHHhCCEEE
Confidence 999999999999999999999999999999999999999999999888864 5666678999999999999999999999
Q ss_pred EEeCCEEEEecChHHHHhcCCchhHHHHHHHh
Q 000452 813 VIKDGKITQAGKYTDVINSGTDFMELVDAHKQ 844 (1495)
Q Consensus 813 ~l~~G~i~~~g~~~~l~~~~~~~~~l~~~~~~ 844 (1495)
+|++|+|++.|+++++++.++.|.++++...+
T Consensus 1423 vL~~G~ivE~g~p~~Ll~~~~~f~~l~~~~~~ 1454 (1490)
T TIGR01271 1423 VIEGSSVKQYDSIQKLLNETSLFKQAMSAADR 1454 (1490)
T ss_pred EEECCEEEEeCCHHHHHcCCcHHHHHHHHhCh
Confidence 99999999999999999877788888765543
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-53 Score=535.22 Aligned_cols=504 Identities=15% Similarity=0.130 Sum_probs=365.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 291 LIKAMFRSVWKDVLLTALVAIVCTLATYVG-PYLIDTLVQYLSGKRDFENEGYALVSAFCVAKLVECLCQRFFVFRLEQL 369 (1495)
Q Consensus 291 l~~al~~~~~~~~~~~~~~~l~~~~~~~~~-P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 369 (1495)
+++.+++.+++.++...++.++..++.++. |++.+.+++.+... ....+.+++.+++.. ++.....+...++
T Consensus 3 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~~---~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 75 (547)
T PRK10522 3 LLRLVWRQYRWPFISVMALSLASAALGIGLIAFINQRLIETADTS---LLVLPEFLGLLLLLM----AVTLGSQLALTTL 75 (547)
T ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc---chHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 567778888888888888889888888874 77878888765321 111111111111111 1223344455667
Q ss_pred HHHHHHHHHHHHHHHHhcCCcchhcCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 370 GIRLRAALIAMIYNKGLKLSSQAKQGNTSGEIINFMTVDAERVAELSWYIHDPWLFLFEVALSFLILYKSLGIASVAAFF 449 (1495)
Q Consensus 370 g~rir~~L~~~iy~K~L~ls~~~~~~~~~G~i~nl~s~D~~~i~~~~~~~~~~w~~pl~i~~~~~lL~~~lG~~~l~gl~ 449 (1495)
+.++...+...+|+|.++++....+++++|+++|+++.|++.+..++..+..++...+.+++++++++..-+..+++.++
T Consensus 76 ~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~~l~~~~~~~~~~i~~~~~l~~~~~~l~li~l~ 155 (547)
T PRK10522 76 GHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFVRLPELVQGIILTLGSAAYLAWLSPKMLLVTAI 155 (547)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 78888889999999999999999999999999999999999999876666677788888888777777655555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhc--cHHHHHHHHHH----HHHHHHHHHHHHHHH
Q 000452 450 GTVIFMLVNVPLSTVQEKFQNELMKSKDERMKATSEILRNMRILKLQG--WELKFLSKTID----LRKSESGWLKRCLYT 523 (1495)
Q Consensus 450 ~~i~~~~~~~~~~~~~~~~~~~~m~~~D~R~~~~~E~L~~ir~IK~~~--wE~~f~~~i~~----~R~~E~~~l~~~~~~ 523 (1495)
++.+.+.+...+.++..+..++.++..+++.+.+.|.++|++++++.+ .++.+.++..+ .++...+.. ..
T Consensus 156 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 231 (547)
T PRK10522 156 WMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELTLNRERAEYVFENEYEPDAQEYRHHIIRAD----TF 231 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhccHHHHHHHHHHHHhHHHHHHHhhhHHHH----HH
Confidence 555555666677788888888899999999999999999999997433 22334444333 333222211 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC---cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 000452 524 SSITSFVFWCAPTFVSVITFGTCILLKVP---LESGKVLSAIATFRLLQILIYKLPAIISMTIQTKVSLQRIASFFCLDE 600 (1495)
Q Consensus 524 ~~~~~~~~~~~p~~v~~~~f~~~~~~~~~---L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e 600 (1495)
....... ..++..+.++.+.+.+.. .+.+.+.....+...+..|+..+...+..+.+++.+++||.+++..++
T Consensus 232 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~ 307 (547)
T PRK10522 232 HLSAVNW----SNIMMLGAIGLVFYMANSLGWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPY 307 (547)
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 1111111 111111122222222211 122222222222334668999999999999999999999999986543
Q ss_pred CCcccccCCCCCCCcccEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEc
Q 000452 601 LQPDLVEKQPRGSSETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLC 680 (1495)
Q Consensus 601 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~ 680 (1495)
.++.. ...+. .....++++|++|+|+. ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++
T Consensus 308 ~~~~~-~~~~~-~~~~~i~~~~v~f~y~~--~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~ 383 (547)
T PRK10522 308 KAEFP-RPQAF-PDWQTLELRNVTFAYQD--NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLD 383 (547)
T ss_pred ccccc-ccccc-CcCceEEEEEEEEEeCC--CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC
Confidence 22111 11111 11236999999999962 3579999999999999999999999999999999999999999999998
Q ss_pred Ce-------------EEEEccCCcccCccHHHHHhcCCCCCHHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHH
Q 000452 681 GT-------------KAYVAQSPWIQSGKIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQ 747 (1495)
Q Consensus 681 g~-------------~ayv~Q~~~l~~~ti~enI~fg~~~~~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQ 747 (1495)
|. ++||+|+|.++++|++|| +...++++.+++++.+++..+++. +.|. .+|.+|||||
T Consensus 384 g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~~~~~~~~~~~~~~~~~l~~~~~~-~~~~-----~~G~~LSgGq 454 (547)
T PRK10522 384 GKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---GKPANPALVEKWLERLKMAHKLEL-EDGR-----ISNLKLSKGQ 454 (547)
T ss_pred CEECCCCCHHHHhhheEEEecChhHHHHhhccc---cCchHHHHHHHHHHHcCCchhhhc-cccC-----CCCCCCCHHH
Confidence 84 589999999999999999 455667777888888877666542 2221 2488999999
Q ss_pred HHHHHHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCccccCCEEEEEeCCEEEEe
Q 000452 748 KQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL-NSKTVLYVTHQVEFLPAADLVLVIKDGKITQA 822 (1495)
Q Consensus 748 kqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvIlvTH~~~~l~~~d~i~~l~~G~i~~~ 822 (1495)
|||++||||++++|+++|||||||+||+++++.+.+.+..... +++|+|+|||+++.+..||+|++|++|++++.
T Consensus 455 ~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 455 KKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999988765543332 48999999999998889999999999999875
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-54 Score=514.37 Aligned_cols=440 Identities=24% Similarity=0.379 Sum_probs=334.8
Q ss_pred ccEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe-------------
Q 000452 616 TAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------- 682 (1495)
Q Consensus 616 ~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~------------- 682 (1495)
..++++|++++|+ ..++|+|+||++.+||++|++|+||+|||||+|.|.|.++|++|+|.++|+
T Consensus 7 ~ll~~~~i~K~Fg---gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~ 83 (500)
T COG1129 7 PLLELRGISKSFG---GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAA 83 (500)
T ss_pred ceeeeecceEEcC---CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhC
Confidence 3689999999996 468999999999999999999999999999999999999999999999995
Q ss_pred -EEEEccCCccc-CccHHHHHhcCCCC-------CHHHH----HHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHH
Q 000452 683 -KAYVAQSPWIQ-SGKIEDNILFGKEM-------DRERY----NAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQ 749 (1495)
Q Consensus 683 -~ayv~Q~~~l~-~~ti~enI~fg~~~-------~~~~~----~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkq 749 (1495)
|+.|.|+..+. +.||.|||.+|++. |..+. +++++..++. .. ......+||+||||
T Consensus 84 GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~---------~~--~~~~v~~LsiaqrQ 152 (500)
T COG1129 84 GIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLD---------ID--PDTLVGDLSIAQRQ 152 (500)
T ss_pred CcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCC---------CC--hhhhhhhCCHHHHH
Confidence 47999998875 67999999998753 32322 2233332222 11 34677899999999
Q ss_pred HHHHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEecCCCcccc-CCEEEEEeCCEEEEecCh-HH
Q 000452 750 RIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKY-TD 827 (1495)
Q Consensus 750 Rv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~~~g~~-~~ 827 (1495)
-|+||||++.+++|+|||||||+|+.+..+++|+.+.....+|.++|+|||+++.+.. ||+|.||+||+.+..++. ++
T Consensus 153 ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~~~~ 232 (500)
T COG1129 153 MVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAE 232 (500)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecccccC
Confidence 9999999999999999999999999999999997544444579999999999998765 999999999998864431 10
Q ss_pred HHhcCCchhHHHHHHHhhhcccccccCCCCCCCCCCCCCCCCCCcccccccccccccccccccccccchhhhhhHHHHHh
Q 000452 828 VINSGTDFMELVDAHKQALSTLDSIEGRPLSEKGSANGENDGTSATDGVVKEVENKEVQNDREDKVAEPQRQLVQEEERE 907 (1495)
Q Consensus 828 l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 907 (1495)
+ . ..++++
T Consensus 233 ~------------------------------------------------------------~-------~~~lv~----- 240 (500)
T COG1129 233 T------------------------------------------------------------S-------EDELVR----- 240 (500)
T ss_pred C------------------------------------------------------------C-------HHHHHH-----
Confidence 0 0 000000
Q ss_pred hcCchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhcccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHH
Q 000452 908 KGKVEFSVYWKYITAAYGGVLVPFILLAQTLFQILQIASNYWIAWATPASKDIKPRVTGSMLLIVFVALAFGSSFCILAR 987 (1495)
Q Consensus 908 ~g~v~~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~ 987 (1495)
. .+
T Consensus 241 --------------~------------------------------Mv--------------------------------- 243 (500)
T COG1129 241 --------------L------------------------------MV--------------------------------- 243 (500)
T ss_pred --------------H------------------------------hh---------------------------------
Confidence 0 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCcccccccccccchhHHhcchhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 988 STLLATAGYKTATLLFNKMHYCIFRAPMSFFDATPSGRIINRASTDQSAVDLSIPALIGSFAFSIIRVLGVIGVMSLVAW 1067 (1495)
Q Consensus 988 ~~~~~~~~~~~s~~l~~~ll~~ll~ap~~ffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 1067 (1495)
||
T Consensus 244 ------------------------------------Gr------------------------------------------ 245 (500)
T COG1129 244 ------------------------------------GR------------------------------------------ 245 (500)
T ss_pred ------------------------------------Cc------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcchHHHHhhccHHHHHHHHHHHHHHhhchHHHHH
Q 000452 1068 QVFIVFIPVIATCIWYQQYYISSARELSRLVGVCKAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGYSRPTFHVA 1147 (1495)
Q Consensus 1068 ~~~~v~ip~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~ 1147 (1495)
++
T Consensus 246 -------------------------~~----------------------------------------------------- 247 (500)
T COG1129 246 -------------------------EL----------------------------------------------------- 247 (500)
T ss_pred -------------------------ch-----------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCC
Q 000452 1148 AAMEWLGFRLDMLSNITFAFSLVFLISIPKGFIDPAIAGLAVTYGLTLNNLQAMLIWLACQMENKIISVERIFQYTCIPS 1227 (1495)
Q Consensus 1148 ~~~~wl~~rl~~l~~~~~~~~~~~~~~~~~~~~~~~~~gl~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~ 1227 (1495)
+. .| |.
T Consensus 248 ---------------------------------------------------------------------~~--~~---~~ 253 (500)
T COG1129 248 ---------------------------------------------------------------------ED--LF---PE 253 (500)
T ss_pred ---------------------------------------------------------------------hh--hc---cc
Confidence 00 00 00
Q ss_pred CCCCccccCCCCCCCCCcceEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEE
Q 000452 1228 EPPLEIEESRPNHSWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1307 (1495)
Q Consensus 1228 E~~~~~~~~~~~~~wp~~g~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~ 1307 (1495)
++ ++ -+....++++|++.. ..++|+||++++||.+||.|--|||+|-|+.+|||.-++.+|+|.
T Consensus 254 -~~-------~~--~~~~~~l~v~~l~~~------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~ 317 (500)
T COG1129 254 -PP-------EE--GIGEPVLEVRNLSGG------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEIL 317 (500)
T ss_pred -cc-------cc--CCCCcEEEEecCCCC------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEE
Confidence 00 00 011224677887642 168999999999999999999999999999999999999999999
Q ss_pred EcCEeCCCCCHH-HHhcccEEEcccCc---CC-CCcHHHhcCCC--CCCCHH-HHHHHHHHcCCcHHHHhc---cCCccc
Q 000452 1308 IDGIDISLIGLH-DLRTRLSIIPQDPV---MF-EGTVRSNVDPL--EEYTDE-QIWEALDKCQLGDEVRKK---EGKLDS 1376 (1495)
Q Consensus 1308 IDG~dI~~i~l~-~LR~~isiIpQdp~---LF-~GTIR~NLdp~--~~~sd~-ei~~aL~~~~L~~~v~~l---p~gLdt 1376 (1495)
+||.++.--+.+ ..+..|+|||-|-- +| .-+|++|+... ..++.. -+...-++.-..++++++ ....+.
T Consensus 318 l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~ 397 (500)
T COG1129 318 LDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQ 397 (500)
T ss_pred ECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccc
Confidence 999988877655 68899999998763 44 55999999532 111100 122222222233444443 223444
Q ss_pred ccccCCCCCCchHHHHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhh-ccCEEEE
Q 000452 1377 KVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHF-SDCTVITIAHRITSVI-DSDMVLL 1454 (1495)
Q Consensus 1377 ~v~e~G~nLS~GQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f-~~~TVI~IAHRl~ti~-~~DrIlV 1454 (1495)
++ .+||||.+|+++|||+|..+|+||||||||.++|..+.+.|.+.|++.. +|.+||+|+-.++.+. .||||+|
T Consensus 398 ~v----~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlV 473 (500)
T COG1129 398 PI----GTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILV 473 (500)
T ss_pred hh----hcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEE
Confidence 44 4799999999999999999999999999999999999999999999876 5799999999999987 6999999
Q ss_pred EeCcEEEEecChhH
Q 000452 1455 LSHGLIEEYDSPRK 1468 (1495)
Q Consensus 1455 L~~G~ivE~gsp~~ 1468 (1495)
|.+|+++..=+.++
T Consensus 474 m~~Gri~~e~~~~~ 487 (500)
T COG1129 474 MREGRIVGELDREE 487 (500)
T ss_pred EECCEEEEEecccc
Confidence 99999997544443
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-54 Score=496.15 Aligned_cols=238 Identities=36% Similarity=0.669 Sum_probs=229.5
Q ss_pred ceEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhccc
Q 000452 1246 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRL 1325 (1495)
Q Consensus 1246 g~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i 1325 (1495)
|.|+|+|++++|+++.+++|+|+||+|++||++||+||||||||||+++|+|+++ .+|+|.|||.|+.+++.+++|+++
T Consensus 1 g~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred CeEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence 5799999999998666679999999999999999999999999999999999998 789999999999999999999999
Q ss_pred EEEcccCcCCCCcHHHhcCCCCCCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCe
Q 000452 1326 SIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKI 1405 (1495)
Q Consensus 1326 siIpQdp~LF~GTIR~NLdp~~~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALLr~~~I 1405 (1495)
+||||+|.+|++|+++|++|+...+++++|++++.+++.+++.++|++||+.++|+|.+||+|||||+|||||++++|+|
T Consensus 80 ~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~i 159 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI 159 (275)
T ss_pred EEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999998887899999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhccCEEEEEeCcEEEEecChhHHhhcCCChHHHHHHHHh
Q 000452 1406 LMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSFSQLVAEYT 1485 (1495)
Q Consensus 1406 LiLDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~ivE~gsp~~Ll~~~~s~f~~lv~~~~ 1485 (1495)
|||||||++||++++..+++.|++.+.+||||+||||++++..||||+||++|+++|+|+|++|+++ .+.|++++.+..
T Consensus 160 lllDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~-~~~~~~~~~~~~ 238 (275)
T cd03289 160 LLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNE-KSHFKQAISPSD 238 (275)
T ss_pred EEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhC-cHHHHHHHhhcc
Confidence 9999999999999999999999998889999999999999999999999999999999999999985 589999998776
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-50 Score=516.72 Aligned_cols=503 Identities=17% Similarity=0.150 Sum_probs=371.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 302 DVLLTALVAIVCTLATYVGPYLIDTLVQYLSGKRD--FENEGYALVSAFCVAKLVECLCQRFFVFRLEQLGIRLRAALIA 379 (1495)
Q Consensus 302 ~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~--~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~g~rir~~L~~ 379 (1495)
.++..+++.++.+++....|++.+.+++.+.+.+. +....+.+++.+++ .+++.....|..+++..++|..+..
T Consensus 97 ~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~----~~~~~~~~~~~~~~~~~~~r~~l~~ 172 (659)
T TIGR00954 97 LLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPP----ASFINSAIKYLLKELKLRFRVRLTR 172 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677788888899999999999999998765431 10011112222222 3333333444455666666666666
Q ss_pred HHHHHHhcC----CcchhcCCCHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 000452 380 MIYNKGLKL----SSQAKQGNTSGEIINFMTVDAERVAELSW-YIHDPWLFLFEVALSFLILYKSLGIAS-VAAFFGTVI 453 (1495)
Q Consensus 380 ~iy~K~L~l----s~~~~~~~~~G~i~nl~s~D~~~i~~~~~-~~~~~w~~pl~i~~~~~lL~~~lG~~~-l~gl~~~i~ 453 (1495)
.++++.++. +....++ .+|++++++++|++.+.+.+. .+..+...++.++.+++.++..+++.. ++.++.+.+
T Consensus 173 ~l~~~~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~~~l~l~~l~~~~l 251 (659)
T TIGR00954 173 YLYSKYLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGSVGPAGLFAYLFA 251 (659)
T ss_pred HHHHHHhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 666666553 2222232 579999999999999988654 455566667777778877887677643 333444455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 454 FMLVNVPLSTVQEKFQNELMKSKDERMKATSEILRNMRILKLQGWELKFLSKTIDLRKSESGWLKRCLYTSSITSFVFWC 533 (1495)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~m~~~D~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~~~~ 533 (1495)
.+.+...+.+...+..++..+..++-....+|.++|++.||+|+-|+...+++.+.-++-.+...+.....+....+...
T Consensus 252 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 331 (659)
T TIGR00954 252 TGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNI 331 (659)
T ss_pred HHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 55666777788888888899999999999999999999999999999988887766555555555544444433333222
Q ss_pred HH----HHHHHHHHHHHHHh--c---CCcCHHHHHH-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 000452 534 AP----TFVSVITFGTCILL--K---VPLESGKVLS-A---IATFRLLQILIYKLPAIISMTIQTKVSLQRIASFFCLDE 600 (1495)
Q Consensus 534 ~p----~~v~~~~f~~~~~~--~---~~L~~~~vft-~---lalf~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e 600 (1495)
.. ..+..+..+..++. | +.+|.+..+. + ..++..+..|+..+...+..+.++.++.+||.++++.++
T Consensus 332 i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~ 411 (659)
T TIGR00954 332 VAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLD 411 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 11222222222232 1 5688876544 2 334667789999999999999999999999999997532
Q ss_pred CCc------ccccC-----------------CCCCCCcccEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCc
Q 000452 601 LQP------DLVEK-----------------QPRGSSETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGS 657 (1495)
Q Consensus 601 ~~~------~~~~~-----------------~~~~~~~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~Gs 657 (1495)
..+ ..... .........++++|++|+|+. ++++|+|+||++++||+++|+|||||
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~--~~~il~~isl~i~~Ge~~~IvG~nGs 489 (659)
T TIGR00954 412 DVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPN--GDVLIESLSFEVPSGNHLLICGPNGC 489 (659)
T ss_pred HHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCC--CCeeeecceEEECCCCEEEEECCCCC
Confidence 100 00000 000012246999999999952 34799999999999999999999999
Q ss_pred cHHHHHHHHhCCCCCCCcEEEEcC--eEEEEccCCcccCccHHHHHhcCC--------CCCHHHHHHHHHHhCcHHHHhh
Q 000452 658 GKSSLLSCILGEVPKISGTLKLCG--TKAYVAQSPWIQSGKIEDNILFGK--------EMDRERYNAVLDACSLEKDLEI 727 (1495)
Q Consensus 658 GKSTLl~~llG~~~~~~G~v~~~g--~~ayv~Q~~~l~~~ti~enI~fg~--------~~~~~~~~~vl~~~~l~~dl~~ 727 (1495)
|||||+++|+|+++|++|+|.+++ .++||||+|+++++|++|||.++. ..++++.+++++.+++++.++.
T Consensus 490 GKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~ 569 (659)
T TIGR00954 490 GKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILER 569 (659)
T ss_pred CHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhh
Confidence 999999999999999999999875 589999999999999999999874 2456778889999999887776
Q ss_pred cCCCCcccccCCCCccchHHHHHHHHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEecCCCcccc
Q 000452 728 LSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPA 807 (1495)
Q Consensus 728 l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~~ 807 (1495)
|.|.+|..+ .+.+||||||||++||||++++|+++|||||||+||+.+.+.+.+. +.. .++|+|+|||+++.+..
T Consensus 570 -~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~-l~~--~~~tvI~isH~~~~~~~ 644 (659)
T TIGR00954 570 -EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRL-CRE--FGITLFSVSHRKSLWKY 644 (659)
T ss_pred -cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHH-HHH--cCCEEEEEeCchHHHHh
Confidence 889899876 5789999999999999999999999999999999999998888754 333 38999999999999988
Q ss_pred CCEEEEEeC
Q 000452 808 ADLVLVIKD 816 (1495)
Q Consensus 808 ~d~i~~l~~ 816 (1495)
||++++|++
T Consensus 645 ~d~il~l~~ 653 (659)
T TIGR00954 645 HEYLLYMDG 653 (659)
T ss_pred CCEEEEEeC
Confidence 999999973
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-52 Score=484.49 Aligned_cols=440 Identities=23% Similarity=0.374 Sum_probs=345.4
Q ss_pred ccEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe-------------
Q 000452 616 TAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------- 682 (1495)
Q Consensus 616 ~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~------------- 682 (1495)
..++++++++.|+ ...+++||||+|++||+.|++|+||+|||||+++|.|.++|++|+|.++|+
T Consensus 3 ~~l~~~~itK~f~---~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~ 79 (501)
T COG3845 3 PALEMRGITKRFP---GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRL 79 (501)
T ss_pred ceEEEeccEEEcC---CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHc
Confidence 4689999999996 467899999999999999999999999999999999999999999999995
Q ss_pred -EEEEccCCccc-CccHHHHHhcCCCC------C----HHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHH
Q 000452 683 -KAYVAQSPWIQ-SGKIEDNILFGKEM------D----RERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQR 750 (1495)
Q Consensus 683 -~ayv~Q~~~l~-~~ti~enI~fg~~~------~----~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqR 750 (1495)
||.|.|++.+. +-|+.|||..|.+- + +++.++..+.++++-|.+ ++..+||=|||||
T Consensus 80 GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~-----------~~V~dLsVG~qQR 148 (501)
T COG3845 80 GIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPD-----------AKVADLSVGEQQR 148 (501)
T ss_pred CCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCcc-----------ceeecCCcchhHH
Confidence 58999999886 56999999999753 2 345556666666655443 6788999999999
Q ss_pred HHHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEecCCCcccc-CCEEEEEeCCEEEEecChHHHH
Q 000452 751 IQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYTDVI 829 (1495)
Q Consensus 751 v~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~ 829 (1495)
|.|-+|||++|+++|||||||.|-|...+++|+.+-.....|+|||+|||.++.+.. ||++-||++|+++.. ++..
T Consensus 149 VEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt--~~~~- 225 (501)
T COG3845 149 VEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGT--VDPV- 225 (501)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEee--ecCC-
Confidence 999999999999999999999999999999997554445579999999999999766 999999999997632 2100
Q ss_pred hcCCchhHHHHHHHhhhcccccccCCCCCCCCCCCCCCCCCCcccccccccccccccccccccccchhhhhhHHHHHhhc
Q 000452 830 NSGTDFMELVDAHKQALSTLDSIEGRPLSEKGSANGENDGTSATDGVVKEVENKEVQNDREDKVAEPQRQLVQEEEREKG 909 (1495)
Q Consensus 830 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g 909 (1495)
.+ . . .+|-.
T Consensus 226 -----------------------------------~~----------------~------t-----------~~ela--- 234 (501)
T COG3845 226 -----------------------------------AE----------------T------T-----------EEELA--- 234 (501)
T ss_pred -----------------------------------CC----------------C------C-----------HHHHH---
Confidence 00 0 0 00000
Q ss_pred CchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhcccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 000452 910 KVEFSVYWKYITAAYGGVLVPFILLAQTLFQILQIASNYWIAWATPASKDIKPRVTGSMLLIVFVALAFGSSFCILARST 989 (1495)
Q Consensus 910 ~v~~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~~ 989 (1495)
. ++ .
T Consensus 235 -----------~----------lM--------------------v----------------------------------- 238 (501)
T COG3845 235 -----------E----------LM--------------------V----------------------------------- 238 (501)
T ss_pred -----------H----------Hh--------------------c-----------------------------------
Confidence 0 00 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHccCCcccccccccccchhHHhcchhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 990 LLATAGYKTATLLFNKMHYCIFRAPMSFFDATPSGRIINRASTDQSAVDLSIPALIGSFAFSIIRVLGVIGVMSLVAWQV 1069 (1495)
Q Consensus 990 ~~~~~~~~~s~~l~~~ll~~ll~ap~~ffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 1069 (1495)
T Consensus 239 -------------------------------------------------------------------------------- 238 (501)
T COG3845 239 -------------------------------------------------------------------------------- 238 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcchHHHHhhccHHHHHHHHHHHHHHhhchHHHHHHH
Q 000452 1070 FIVFIPVIATCIWYQQYYISSARELSRLVGVCKAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGYSRPTFHVAAA 1149 (1495)
Q Consensus 1070 ~~v~ip~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~ 1149 (1495)
T Consensus 239 -------------------------------------------------------------------------------- 238 (501)
T COG3845 239 -------------------------------------------------------------------------------- 238 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCCC
Q 000452 1150 MEWLGFRLDMLSNITFAFSLVFLISIPKGFIDPAIAGLAVTYGLTLNNLQAMLIWLACQMENKIISVERIFQYTCIPSEP 1229 (1495)
Q Consensus 1150 ~~wl~~rl~~l~~~~~~~~~~~~~~~~~~~~~~~~~gl~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~E~ 1229 (1495)
...+. .+.+
T Consensus 239 ---------------------------G~~v~-------------------------------------------~~~~- 247 (501)
T COG3845 239 ---------------------------GREVV-------------------------------------------LRVV- 247 (501)
T ss_pred ---------------------------CCccc-------------------------------------------cccc-
Confidence 00000 0000
Q ss_pred CCccccCCCCCCCCCcceEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEc
Q 000452 1230 PLEIEESRPNHSWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILID 1309 (1495)
Q Consensus 1230 ~~~~~~~~~~~~wp~~g~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~ID 1309 (1495)
. ++.-|..--++++|+++.-+.+ -..+++|||++++||.+||.|-.|.|-|.|+.+|.|+..|.+|+|.++
T Consensus 248 -------~-~~~~pg~~vL~V~~L~v~~~~~-~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~ 318 (501)
T COG3845 248 -------K-PPSTPGEVVLEVEDLSVKDRRG-VTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLN 318 (501)
T ss_pred -------c-CCCCCCCeEEEEeeeEeecCCC-CceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEEC
Confidence 0 1111233468999999875443 358999999999999999999999999999999999999999999999
Q ss_pred CEeC-CCCCHHHHh-cccEEEcccCc----CCCCcHHHhcCCCCC----------CCHHHHHHHHHHcCCcHHHHh---c
Q 000452 1310 GIDI-SLIGLHDLR-TRLSIIPQDPV----MFEGTVRSNVDPLEE----------YTDEQIWEALDKCQLGDEVRK---K 1370 (1495)
Q Consensus 1310 G~dI-~~i~l~~LR-~~isiIpQdp~----LF~GTIR~NLdp~~~----------~sd~ei~~aL~~~~L~~~v~~---l 1370 (1495)
|.|+ ...+....| ..+++||.|.. ..+-|+.+|+-+... .+-.++.+..++ .+++ .
T Consensus 319 G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~-----li~~fdVr 393 (501)
T COG3845 319 GKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARE-----LIEEFDVR 393 (501)
T ss_pred CEeccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHH-----HHHHcCcc
Confidence 9997 677777765 46999999984 566799999853221 122333332221 1221 1
Q ss_pred cCCcccccccCCCCCCchHHHHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-
Q 000452 1371 EGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHF-SDCTVITIAHRITSVID- 1448 (1495)
Q Consensus 1371 p~gLdt~v~e~G~nLS~GQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f-~~~TVI~IAHRl~ti~~- 1448 (1495)
+.+.++++ .+||||+.|++-+||-|.++|++||..+||-+||..+.+.|.+.|.+.. +|+.|++|+-.|+.+..
T Consensus 394 ~~~~~~~a----~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~l 469 (501)
T COG3845 394 APSPDAPA----RSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILEL 469 (501)
T ss_pred CCCCCcch----hhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHh
Confidence 33444444 4799999999999999999999999999999999999999999988765 68999999999999865
Q ss_pred cCEEEEEeCcEEEEecChhH
Q 000452 1449 SDMVLLLSHGLIEEYDSPRK 1468 (1495)
Q Consensus 1449 ~DrIlVL~~G~ivE~gsp~~ 1468 (1495)
||||.||.+|+++....|++
T Consensus 470 sDrIaVi~~Gri~~~~~~~~ 489 (501)
T COG3845 470 SDRIAVIYEGRIVGIVPPEE 489 (501)
T ss_pred hheeeeeeCCceeccccccc
Confidence 99999999999999888776
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-49 Score=443.57 Aligned_cols=464 Identities=22% Similarity=0.294 Sum_probs=357.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCcchhcCCCHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 370 GIRLRAALIAMIYNKGLKLSSQAKQGNTSGEIINFMTVDAERVAELSWYI-HDPWLFLFEVALSFLILYKSLGIASVAAF 448 (1495)
Q Consensus 370 g~rir~~L~~~iy~K~L~ls~~~~~~~~~G~i~nl~s~D~~~i~~~~~~~-~~~w~~pl~i~~~~~lL~~~lG~~~l~gl 448 (1495)
+....-.+....|.+.+.|+.....+..+|.+---+.--..-|+...+++ ..+....+++.+..+++++..||......
T Consensus 10 ~q~a~r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~~~f~~~t 89 (497)
T COG5265 10 GQIAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYGWWFALTT 89 (497)
T ss_pred HHHHHHHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccHHHHHH
Confidence 33444456667788999998877777777766554544455566555443 44556678999999999999997654444
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHhccHHHHHHHHHHH----HHHHHHHHHHHHH
Q 000452 449 F-GTVIFMLVNVPLSTVQEKFQNELMKSKDER-MKATSEILRNMRILKLQGWELKFLSKTIDL----RKSESGWLKRCLY 522 (1495)
Q Consensus 449 ~-~~i~~~~~~~~~~~~~~~~~~~~m~~~D~R-~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~----R~~E~~~l~~~~~ 522 (1495)
+ .+++...+.+........++++ |...|.. -..-.+.|-|..++|.|+-|+.+..+-.+. ++.+++......+
T Consensus 90 ~vtv~lY~~ftv~~s~wr~~~rr~-~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~~Sl~~ 168 (497)
T COG5265 90 LVTVILYLLFTVIVSDWRTDFRRL-MNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVHVSLLV 168 (497)
T ss_pred HHHHHHHHHhheeehhhhHHHHHh-hhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHHHHHHHH
Confidence 4 4444444444444444444444 4444444 455668899999999999998877665443 3333332222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 000452 523 TSSITSFVFWCAPTFVSVITFGTCILLKVPLESGKVLSAIATFRLLQILIYKLPAIISMTIQTKVSLQRIASFFCLDELQ 602 (1495)
Q Consensus 523 ~~~~~~~~~~~~p~~v~~~~f~~~~~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~ 602 (1495)
+......++.. .+....+.+..-+..+.+|.|...-.-++...+..|++.+......+-|+++..+++.+.+..+-..
T Consensus 169 Ln~gQ~~I~~~--~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~~~~v 246 (497)
T COG5265 169 LNFGQTAIFST--GLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVEAEV 246 (497)
T ss_pred HHHhhHHHHHH--HHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhccchhh
Confidence 22111111111 1122223334445577899999999999999999999999999999999999999998887654332
Q ss_pred cccccCCCCC-CCcccEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcC
Q 000452 603 PDLVEKQPRG-SSETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG 681 (1495)
Q Consensus 603 ~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g 681 (1495)
.+...-.+-. ...+.+.+++++|.|++ .+|+|+++||++++|+.++++|++|+||||+++.|.+.+++.+|.|.++|
T Consensus 247 ~d~pda~~L~~~~~g~v~F~~V~F~y~~--~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~ 324 (497)
T COG5265 247 SDAPDAPPLWPVRLGAVAFINVSFAYDP--RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDG 324 (497)
T ss_pred ccCCCCccccccccceEEEEEEEeeccc--cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcc
Confidence 2221111111 23457999999999974 57999999999999999999999999999999999999999999999999
Q ss_pred e-------------EEEEccCCcccCccHHHHHhcCCC-CCHHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHH
Q 000452 682 T-------------KAYVAQSPWIQSGKIEDNILFGKE-MDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQ 747 (1495)
Q Consensus 682 ~-------------~ayv~Q~~~l~~~ti~enI~fg~~-~~~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQ 747 (1495)
+ +|.|||+..+||.|+..||.+|++ ..++...++.++.++.+.++.+|+|.+|.+||+|-.||||+
T Consensus 325 qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSgge 404 (497)
T COG5265 325 QDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGE 404 (497)
T ss_pred hhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCch
Confidence 5 599999999999999999999987 45667778899999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEecCCCccccCCEEEEEeCCEEEEecChHH
Q 000452 748 KQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTD 827 (1495)
Q Consensus 748 kqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~~~d~i~~l~~G~i~~~g~~~~ 827 (1495)
||||++||++..+|+|++|||.|||||.||++.|- ..++...+|+|-+++.|+++.+-.||.|+||+||+|+|.|++++
T Consensus 405 kqrvaiar~ilk~p~il~~deatsaldt~te~~iq-~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~erg~h~~ 483 (497)
T COG5265 405 KQRVAIARTILKNPPILILDEATSALDTHTEQAIQ-AALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEE 483 (497)
T ss_pred HHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHH-HHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEecCcHHH
Confidence 99999999999999999999999999999998885 45666778999999999999999999999999999999999999
Q ss_pred HHhcCCchhHHH
Q 000452 828 VINSGTDFMELV 839 (1495)
Q Consensus 828 l~~~~~~~~~l~ 839 (1495)
+++.++.|.+++
T Consensus 484 ll~~~g~ya~mw 495 (497)
T COG5265 484 LLAAGGLYAEMW 495 (497)
T ss_pred HHHcCChHHHHh
Confidence 999988887764
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-50 Score=476.09 Aligned_cols=257 Identities=23% Similarity=0.429 Sum_probs=222.4
Q ss_pred HHhhHHHHHHHHhcCCCCCCCccc------cCCC---CCCCCCcceEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEE
Q 000452 1211 NKIISVERIFQYTCIPSEPPLEIE------ESRP---NHSWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIV 1281 (1495)
Q Consensus 1211 ~~~~sveRi~~~~~~~~E~~~~~~------~~~~---~~~wp~~g~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIV 1281 (1495)
..+.+++|+.+|...+.|.....+ +..+ +..||..|.|+|+|++++|+++.+++|+|+||+|++||++||+
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~Iv 114 (329)
T PRK14257 35 QKLNKYQRAFAWLKLPKQKKAELKQFLNKKKTQVDLLKEDFNHANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFI 114 (329)
T ss_pred hccccccchhhHHhcccccchhhhhcccccccccccccCCCCcCceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEE
Confidence 446777888888776655432111 1111 3469999999999999999865567999999999999999999
Q ss_pred cCCCCCHHHHHHHHhcccc-----CCccEEEEcCEeCC--CCCHHHHhcccEEEcccCcCCCCcHHHhcC--C-CCCCCH
Q 000452 1282 GRTGSGKSTLIQTLFRIVE-----PAAGQILIDGIDIS--LIGLHDLRTRLSIIPQDPVMFEGTVRSNVD--P-LEEYTD 1351 (1495)
Q Consensus 1282 GrTGSGKSTLl~~L~rl~e-----p~~G~I~IDG~dI~--~i~l~~LR~~isiIpQdp~LF~GTIR~NLd--p-~~~~sd 1351 (1495)
||||||||||+++|+|+++ |.+|+|.|||+|+. ++++.++|++++||||+|++|++||++||+ | +..+++
T Consensus 115 G~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~ 194 (329)
T PRK14257 115 GPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGIND 194 (329)
T ss_pred CCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCCh
Confidence 9999999999999999997 57999999999997 566788999999999999999999999998 3 234555
Q ss_pred HHH-----HHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHH
Q 000452 1352 EQI-----WEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQS 1426 (1495)
Q Consensus 1352 ~ei-----~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~ 1426 (1495)
++. .++++.+++.+ ++++.+++.|.+||||||||+|||||++++|+||||||||++||+++...+++.
T Consensus 195 ~~~~~~~~~~~l~~~~L~~-------~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~ 267 (329)
T PRK14257 195 RKILEKIVEKSLKSAALWD-------EVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEEL 267 (329)
T ss_pred HHHHHHHHHHHHHHcCCcc-------hhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 554 55678887653 456788999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCcEEEEEecCchhhhc-cCEEEEEeCcEEEEecChhHHhhcCC
Q 000452 1427 LRQHFSDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLENKS 1474 (1495)
Q Consensus 1427 Ir~~f~~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~Ll~~~~ 1474 (1495)
|++.++++|+|+||||++++.+ ||||+||++|+|+|.|+|++++.++.
T Consensus 268 i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~~~~~ 316 (329)
T PRK14257 268 ILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFIHPK 316 (329)
T ss_pred HHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCCC
Confidence 9999999999999999999998 99999999999999999999997654
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-45 Score=429.73 Aligned_cols=194 Identities=19% Similarity=0.356 Sum_probs=163.3
Q ss_pred eEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccE
Q 000452 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLS 1326 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~is 1326 (1495)
.|.++||+|+|.++. ..+++++|-|.++++|++|||+|+|||||++++.+.+.|+.|.|.-.- ..+++
T Consensus 389 vi~~~nv~F~y~~~~-~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~-----------H~~~~ 456 (614)
T KOG0927|consen 389 VIMVQNVSFGYSDNP-MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHS-----------HNKLP 456 (614)
T ss_pred eEEEeccccCCCCcc-hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccc-----------cccch
Confidence 599999999998764 799999999999999999999999999999999999999999886432 22344
Q ss_pred EEccc---CcCCCCcHHHhcCC-CC-CCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHcc
Q 000452 1327 IIPQD---PVMFEGTVRSNVDP-LE-EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLK 1401 (1495)
Q Consensus 1327 iIpQd---p~LF~GTIR~NLdp-~~-~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALLr 1401 (1495)
+--|. -.-.+-|.-+|+.| +. +-..+++...|.++||....+.. ++ ++||+|||.||++||++++
T Consensus 457 ~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~------p~----~~LS~Gqr~rVlFa~l~~k 526 (614)
T KOG0927|consen 457 RYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVV------PM----SQLSDGQRRRVLFARLAVK 526 (614)
T ss_pred hhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCcccccc------ch----hhcccccchhHHHHHHHhc
Confidence 44443 34566677777754 33 35667888999999997544333 33 4799999999999999999
Q ss_pred CCCeEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-cCEEEEEeCcEEEEec
Q 000452 1402 RRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGLIEEYD 1464 (1495)
Q Consensus 1402 ~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~g 1464 (1495)
+|.||+|||||++||.+|-..+.++|.+. +.+||+|+|+...|.. +++|++.++|.+..++
T Consensus 527 qP~lLlLDEPtnhLDi~tid~laeaiNe~--~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~ 588 (614)
T KOG0927|consen 527 QPHLLLLDEPTNHLDIETIDALAEAINEF--PGGVVLVSHDFRLISQVAEEIWVCENGTVTKWD 588 (614)
T ss_pred CCcEEEecCCCcCCCchhHHHHHHHHhcc--CCceeeeechhhHHHHHHHHhHhhccCceeecC
Confidence 99999999999999999999999999876 6799999999999987 8999999999987764
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=415.89 Aligned_cols=240 Identities=48% Similarity=0.807 Sum_probs=224.9
Q ss_pred CcceEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhc
Q 000452 1244 SHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRT 1323 (1495)
Q Consensus 1244 ~~g~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~ 1323 (1495)
..|.|+++|++++|+.....+|+|+||+|+|||++||+|++|||||||+++|+|+++|++|+|.+||.++.+.+...+|+
T Consensus 16 ~~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~ 95 (257)
T cd03288 16 LGGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS 95 (257)
T ss_pred CCceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhh
Confidence 35789999999999754356999999999999999999999999999999999999999999999999999999889999
Q ss_pred ccEEEcccCcCCCCcHHHhcCCCCCCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCC
Q 000452 1324 RLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRR 1403 (1495)
Q Consensus 1324 ~isiIpQdp~LF~GTIR~NLdp~~~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALLr~~ 1403 (1495)
+++|+||+|.+|++|+++|+++.....+++++++++.+++.+.+..+|.|+++.+++.+.+||+|||||++||||++++|
T Consensus 96 ~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 175 (257)
T cd03288 96 RLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKS 175 (257)
T ss_pred hEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999876555677889999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhccCEEEEEeCcEEEEecChhHHhhcCCChHHHHHHH
Q 000452 1404 KILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSFSQLVAE 1483 (1495)
Q Consensus 1404 ~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~ivE~gsp~~Ll~~~~s~f~~lv~~ 1483 (1495)
++|||||||++||+++...+.+.|++..+++|+|+++|+++.+..||||++|++|++++.|+++++.+.+++.|+.++.+
T Consensus 176 ~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 255 (257)
T cd03288 176 SILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLVRT 255 (257)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHHHHHhc
Confidence 99999999999999999999999998777899999999999999999999999999999999999998777888887653
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-45 Score=403.89 Aligned_cols=227 Identities=28% Similarity=0.438 Sum_probs=198.1
Q ss_pred EEEeeeeEEeCCC---CCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCC---HHHH
Q 000452 1248 IDLRDLQVRYAPH---MPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIG---LHDL 1321 (1495)
Q Consensus 1248 I~f~nv~~~Y~~~---~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~---l~~L 1321 (1495)
|+++||+..|... ...+|+||||+|++||..||+|+||||||||++++-+|-+|++|+|.+||.|+..++ +..+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 8999999999863 357999999999999999999999999999999999999999999999998888776 5667
Q ss_pred hcccEEEcccCcCCC-CcHHHhcC-CCC--CCCHH----HHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHH
Q 000452 1322 RTRLSIIPQDPVMFE-GTVRSNVD-PLE--EYTDE----QIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLV 1393 (1495)
Q Consensus 1322 R~~isiIpQdp~LF~-GTIR~NLd-p~~--~~sd~----ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl 1393 (1495)
|++||+|+|++-|++ -||.+|+. |+. ..+.+ ++.+.|+.+||.|.-..-| .+||||||||+
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP-----------~qLSGGQKQRV 150 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYP-----------AQLSGGQKQRV 150 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCc-----------hhcCcchhhHH
Confidence 899999999999998 69999996 543 34444 4677888999887765554 57899999999
Q ss_pred HHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCchhhhc-cCEEEEEeCcEEEEecChhHHh
Q 000452 1394 CLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHF--SDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLL 1470 (1495)
Q Consensus 1394 ~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f--~~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~Ll 1470 (1495)
+|||||..+|+||+.|||||+|||+|.+.|.+.|++.- -|-|+++|||.++.|++ ||||.||++|+|+|.|+-.++.
T Consensus 151 aIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 151 AIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 99999999999999999999999999999888887643 37899999999999987 9999999999999999999999
Q ss_pred hcCC-ChHHHHHHHHh
Q 000452 1471 ENKS-SSFSQLVAEYT 1485 (1495)
Q Consensus 1471 ~~~~-s~f~~lv~~~~ 1485 (1495)
.++. ..=++++.+..
T Consensus 231 ~~Pk~~~t~~fi~~~~ 246 (339)
T COG1135 231 ANPKHAITQEFIGETL 246 (339)
T ss_pred cCcchHHHHHHHHhhc
Confidence 8874 34455655443
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-45 Score=382.28 Aligned_cols=216 Identities=29% Similarity=0.465 Sum_probs=193.8
Q ss_pred eEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCC-CCCHHHHhccc
Q 000452 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDIS-LIGLHDLRTRL 1325 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~-~i~l~~LR~~i 1325 (1495)
-|+++||+.+|... .||+|||++|++||.+.|+||||||||||+++|.+|.+|++|+|.|||.++. ..++..+|+++
T Consensus 2 mi~i~~l~K~fg~~--~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~v 79 (240)
T COG1126 2 MIEIKNLSKSFGDK--EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKV 79 (240)
T ss_pred eEEEEeeeEEeCCe--EEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhc
Confidence 48999999999854 4999999999999999999999999999999999999999999999998774 33789999999
Q ss_pred EEEcccCcCCCC-cHHHhcC--CC--CCCC----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHH
Q 000452 1326 SIIPQDPVMFEG-TVRSNVD--PL--EEYT----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLG 1396 (1495)
Q Consensus 1326 siIpQdp~LF~G-TIR~NLd--p~--~~~s----d~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LA 1396 (1495)
|+|+|+..||+- |+-+|+. |- ...+ .+.-.+.|+++||.|.....|. .|||||+||++||
T Consensus 80 GmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~-----------qLSGGQqQRVAIA 148 (240)
T COG1126 80 GMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPA-----------QLSGGQQQRVAIA 148 (240)
T ss_pred CeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCcc-----------ccCcHHHHHHHHH
Confidence 999999999977 9999985 31 1222 2335667999999998887775 5799999999999
Q ss_pred HHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-cCEEEEEeCcEEEEecChhHHhhcCC
Q 000452 1397 RVLLKRRKILMLDEATASVDTATDNLIQQSLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLENKS 1474 (1495)
Q Consensus 1397 RALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~Ll~~~~ 1474 (1495)
|||.-+|+|+++|||||+|||+.-..+.+++++.. .+-|.|+|||.+....+ +|||+.||+|+|+|.|+|+++..++.
T Consensus 149 RALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p~ 228 (240)
T COG1126 149 RALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNPK 228 (240)
T ss_pred HHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCCC
Confidence 99999999999999999999999999999999876 46899999999999988 99999999999999999999998865
Q ss_pred C
Q 000452 1475 S 1475 (1495)
Q Consensus 1475 s 1475 (1495)
.
T Consensus 229 ~ 229 (240)
T COG1126 229 S 229 (240)
T ss_pred C
Confidence 3
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-44 Score=424.85 Aligned_cols=264 Identities=24% Similarity=0.320 Sum_probs=222.8
Q ss_pred cCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCCCCCCcccEEEEeeEEEecC
Q 000452 550 KVPLESGKVLSAIATFRLLQILIYKLPAIISMTIQTKVSLQRIASFFCLDELQPDLVEKQPRGSSETAIEIADGNFSWDI 629 (1495)
Q Consensus 550 ~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 629 (1495)
.+++++.++|+.++.|+.+..|+..+|..... .+|++.|+..+|.+....... ......|+++|++++|..
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~nls~~y~~ 92 (329)
T PRK14257 22 LNELDAKAIYDEFQKLNKYQRAFAWLKLPKQK-------KAELKQFLNKKKTQVDLLKED--FNHANVFEIRNFNFWYMN 92 (329)
T ss_pred cchhHHHHHHHHhhccccccchhhHHhccccc-------chhhhhcccccccccccccCC--CCcCceEEEEeeEEEecC
Confidence 35689999999999999999999988876443 569999988776543211111 123357999999999963
Q ss_pred CCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCC-----CCCcEEEEcC---------------eEEEEccC
Q 000452 630 SSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVP-----KISGTLKLCG---------------TKAYVAQS 689 (1495)
Q Consensus 630 ~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~-----~~~G~v~~~g---------------~~ayv~Q~ 689 (1495)
..+++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++| .++||||+
T Consensus 93 -~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~ 171 (329)
T PRK14257 93 -RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQK 171 (329)
T ss_pred -CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecC
Confidence 23579999999999999999999999999999999999996 5799998765 36899999
Q ss_pred CcccCccHHHHHhcCCCC---C-HH----HHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHHHHHhccCC
Q 000452 690 PWIQSGKIEDNILFGKEM---D-RE----RYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDA 761 (1495)
Q Consensus 690 ~~l~~~ti~enI~fg~~~---~-~~----~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~ 761 (1495)
||++++|++|||.|+..+ + ++ .++++++.|+|.++++ +.+++++.+|||||||||+||||++++|
T Consensus 172 ~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~-------~~~~~~~~~LSgGqkqRl~LARAl~~~p 244 (329)
T PRK14257 172 PTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVK-------DDLDKAGNALSGGQQQRLCIARAIALEP 244 (329)
T ss_pred CccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhh-------hhhhCCcccCCHHHHHHHHHHHHHHhCC
Confidence 999999999999987532 1 22 3677788888765553 5688999999999999999999999999
Q ss_pred CEeEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEecCCCcccc-CCEEEEEeCCEEEEecChHHHHhc
Q 000452 762 DIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYTDVINS 831 (1495)
Q Consensus 762 ~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 831 (1495)
+|+||||||+|||+++.+++ .+++....+++|+|+|||+++++.. ||+|++|++|+|++.|+++++...
T Consensus 245 ~IlLLDEPts~LD~~~~~~i-~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~~~ 314 (329)
T PRK14257 245 EVLLMDEPTSALDPIATAKI-EELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFIH 314 (329)
T ss_pred CEEEEeCCcccCCHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999998885 5677777778999999999999887 999999999999999999998754
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-44 Score=376.71 Aligned_cols=202 Identities=31% Similarity=0.433 Sum_probs=176.9
Q ss_pred cEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe--------------
Q 000452 617 AIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------- 682 (1495)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~-------------- 682 (1495)
.|+++|++++|. +..+|+|||++|++||+++|||||||||||||+||.|+.+|++|+|.++|.
T Consensus 2 mi~i~~l~K~fg---~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 2 MIEIKNLSKSFG---DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred eEEEEeeeEEeC---CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence 489999999996 457999999999999999999999999999999999999999999999993
Q ss_pred EEEEccCCcccC-ccHHHHHhcCCC----CC----HHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHH
Q 000452 683 KAYVAQSPWIQS-GKIEDNILFGKE----MD----RERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQI 753 (1495)
Q Consensus 683 ~ayv~Q~~~l~~-~ti~enI~fg~~----~~----~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 753 (1495)
+|+|+|+..+|+ .|+.|||..+.- .. +++..+.++..+|.+..+ ..+.+|||||||||||
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~-----------~yP~qLSGGQqQRVAI 147 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKAD-----------AYPAQLSGGQQQRVAI 147 (240)
T ss_pred cCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhh-----------hCccccCcHHHHHHHH
Confidence 479999999885 699999998741 22 244556677777766555 4558999999999999
Q ss_pred HHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEecCCCcccc-CCEEEEEeCCEEEEecChHHHHhcC
Q 000452 754 ARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYTDVINSG 832 (1495)
Q Consensus 754 ARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 832 (1495)
||||..+|+++|+|||||||||+...++.+-.......|.|.|+|||++.|... ||||+.|++|+|+++|+++++..+.
T Consensus 148 ARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p 227 (240)
T COG1126 148 ARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNP 227 (240)
T ss_pred HHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCC
Confidence 999999999999999999999999999886544445579999999999999987 9999999999999999999998654
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-43 Score=401.71 Aligned_cols=234 Identities=32% Similarity=0.518 Sum_probs=216.3
Q ss_pred EEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccEE
Q 000452 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSI 1327 (1495)
Q Consensus 1248 I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~isi 1327 (1495)
|+++|++++|+.+..++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.|+...+...+|++++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 57899999997544569999999999999999999999999999999999999999999999999998888889999999
Q ss_pred EcccCcCCCCcHHHhcCCCC-CCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCeE
Q 000452 1328 IPQDPVMFEGTVRSNVDPLE-EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKIL 1406 (1495)
Q Consensus 1328 IpQdp~LF~GTIR~NLdp~~-~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALLr~~~IL 1406 (1495)
+||+|.+|+.|+++||.... ..+.+++.++++..++.+.+..+|.|+++.....+.+||||||||++||||++++|++|
T Consensus 81 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~ll 160 (237)
T cd03252 81 VLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRIL 160 (237)
T ss_pred EcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEE
Confidence 99999999999999997533 35567788889999999999999999999988999999999999999999999999999
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhccCEEEEEeCcEEEEecChhHHhhcCCChHHHHHH
Q 000452 1407 MLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSFSQLVA 1482 (1495)
Q Consensus 1407 iLDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~ivE~gsp~~Ll~~~~s~f~~lv~ 1482 (1495)
||||||++||+.+...+.+.|++..+++|||+++|+++.+..||+|++|++|++++.|++++++++ .+.|+.++.
T Consensus 161 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~~~~ 235 (237)
T cd03252 161 IFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAE-NGLYAYLYQ 235 (237)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhc-cChHHHHHh
Confidence 999999999999999999999998778999999999999988999999999999999999999975 577777654
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-43 Score=396.17 Aligned_cols=221 Identities=58% Similarity=0.995 Sum_probs=210.1
Q ss_pred ceEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhccc
Q 000452 1246 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRL 1325 (1495)
Q Consensus 1246 g~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i 1325 (1495)
|.|+++|++++|+....++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++...+...+|+++
T Consensus 1 ~~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (221)
T cd03244 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRI 80 (221)
T ss_pred CcEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhE
Confidence 56999999999975445699999999999999999999999999999999999999999999999999998988999999
Q ss_pred EEEcccCcCCCCcHHHhcCCCCCCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCe
Q 000452 1326 SIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKI 1405 (1495)
Q Consensus 1326 siIpQdp~LF~GTIR~NLdp~~~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALLr~~~I 1405 (1495)
+|+||+|.+|++|+++|++++...+++++.++++..++.+.+..+|.|+++...+.+.+||+|||||++|||||+++|++
T Consensus 81 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l 160 (221)
T cd03244 81 SIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKI 160 (221)
T ss_pred EEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999998777788899999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhccCEEEEEeCcEEEEecCh
Q 000452 1406 LMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSP 1466 (1495)
Q Consensus 1406 LiLDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~ivE~gsp 1466 (1495)
|+|||||++||+.+...+.+.|++..++.|||+++|+++.+..||+|++|++|++++.|++
T Consensus 161 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~ 221 (221)
T cd03244 161 LVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDSP 221 (221)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCCC
Confidence 9999999999999999999999988778999999999999999999999999999998864
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-44 Score=372.23 Aligned_cols=220 Identities=28% Similarity=0.468 Sum_probs=198.6
Q ss_pred ceEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCc-----cEEEEcCEeCCC--CCH
Q 000452 1246 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAA-----GQILIDGIDISL--IGL 1318 (1495)
Q Consensus 1246 g~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~-----G~I~IDG~dI~~--i~l 1318 (1495)
..++++|+++.|... .+|+|||++|++++.+|++|||||||||++++|-|+.+..+ |+|.+||.||-+ ++.
T Consensus 6 ~~~~~~~l~~yYg~~--~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~ 83 (253)
T COG1117 6 PAIEVRDLNLYYGDK--HALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV 83 (253)
T ss_pred ceeEecceeEEECch--hhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCH
Confidence 368999999999754 59999999999999999999999999999999999999875 999999999986 578
Q ss_pred HHHhcccEEEcccCcCCCCcHHHhcCCCC-------CCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHH
Q 000452 1319 HDLRTRLSIIPQDPVMFEGTVRSNVDPLE-------EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQ 1391 (1495)
Q Consensus 1319 ~~LR~~isiIpQdp~LF~GTIR~NLdp~~-------~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQ 1391 (1495)
-+||+++|+|.|.|.-|+.||+||+.... ..-||-+.++|+++.|||.|... | .+.+..|||||+|
T Consensus 84 ~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDr---L----~~sa~~LSGGQQQ 156 (253)
T COG1117 84 VELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDR---L----HKSALGLSGGQQQ 156 (253)
T ss_pred HHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHH---h----hCCccCCChhHHH
Confidence 99999999999999999999999996431 12245578899999999998753 3 3567789999999
Q ss_pred HHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhh-ccCEEEEEeCcEEEEecChhHHh
Q 000452 1392 LVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVI-DSDMVLLLSHGLIEEYDSPRKLL 1470 (1495)
Q Consensus 1392 rl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~-~~DrIlVL~~G~ivE~gsp~~Ll 1470 (1495)
||||||||.-+|+||+||||||+||+.+...|.+.|.+..++-|||+|||.+.... -+|+...+..|+++|+|..+++.
T Consensus 157 RLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF 236 (253)
T COG1117 157 RLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIF 236 (253)
T ss_pred HHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhh
Confidence 99999999999999999999999999999999999999999999999999998765 49999999999999999999999
Q ss_pred hcCC
Q 000452 1471 ENKS 1474 (1495)
Q Consensus 1471 ~~~~ 1474 (1495)
.++.
T Consensus 237 ~~P~ 240 (253)
T COG1117 237 TNPK 240 (253)
T ss_pred cCcc
Confidence 8763
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-43 Score=375.39 Aligned_cols=218 Identities=28% Similarity=0.444 Sum_probs=195.7
Q ss_pred EEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccEE
Q 000452 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSI 1327 (1495)
Q Consensus 1248 I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~isi 1327 (1495)
|+|+||+++|.+ ..+++|+||+|++||.+.++|+|||||||+++++.|+++|++|+|+|||.||++++..+||++|||
T Consensus 2 I~~~nvsk~y~~--~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGY 79 (309)
T COG1125 2 IEFENVSKRYGN--KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGY 79 (309)
T ss_pred ceeeeeehhcCC--ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhh
Confidence 799999999984 459999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcccCcCCCC-cHHHhcC--CC-CCCC----HHHHHHHHHHcCCcH--HHHhccCCcccccccCCCCCCchHHHHHHHHH
Q 000452 1328 IPQDPVMFEG-TVRSNVD--PL-EEYT----DEQIWEALDKCQLGD--EVRKKEGKLDSKVTENGENWSMGQRQLVCLGR 1397 (1495)
Q Consensus 1328 IpQdp~LF~G-TIR~NLd--p~-~~~s----d~ei~~aL~~~~L~~--~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LAR 1397 (1495)
|-|.--||+. ||.+||. |. ...+ ++++.+.|+.++|.+ +..+.|. .|||||+||+.+||
T Consensus 80 viQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~-----------eLSGGQQQRVGv~R 148 (309)
T COG1125 80 VIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPH-----------ELSGGQQQRVGVAR 148 (309)
T ss_pred hhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCch-----------hcCcchhhHHHHHH
Confidence 9999999976 9999996 31 2333 455778899999964 6655554 68999999999999
Q ss_pred HHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecCchh-hhccCEEEEEeCcEEEEecChhHHhhcCC
Q 000452 1398 VLLKRRKILMLDEATASVDTATDNLIQQSLRQHFS--DCTVITIAHRITS-VIDSDMVLLLSHGLIEEYDSPRKLLENKS 1474 (1495)
Q Consensus 1398 ALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~--~~TVI~IAHRl~t-i~~~DrIlVL~~G~ivE~gsp~~Ll~~~~ 1474 (1495)
||..+|+||+||||.++||+-|...+|+-+.+..+ ++|+|+|||+++. ++-+|||.||++|+|+.+|+|+++++++.
T Consensus 149 ALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~Pa 228 (309)
T COG1125 149 ALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPA 228 (309)
T ss_pred HHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCcc
Confidence 99999999999999999999999999998876543 7999999999976 56799999999999999999999999887
Q ss_pred ChHH
Q 000452 1475 SSFS 1478 (1495)
Q Consensus 1475 s~f~ 1478 (1495)
..|-
T Consensus 229 n~FV 232 (309)
T COG1125 229 NDFV 232 (309)
T ss_pred HHHH
Confidence 6553
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-42 Score=398.74 Aligned_cols=194 Identities=22% Similarity=0.313 Sum_probs=167.9
Q ss_pred CcceEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhc
Q 000452 1244 SHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRT 1323 (1495)
Q Consensus 1244 ~~g~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~ 1323 (1495)
++..+++.+|+|.|.|+.++.++++++.+..-+++++||++|+||||+++++.+-.+|..|.+.+.+ |.
T Consensus 359 ~~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~ 427 (582)
T KOG0062|consen 359 SPPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RL 427 (582)
T ss_pred CCCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------cc
Confidence 3457999999999999987899999999999999999999999999999999999999999998876 78
Q ss_pred ccEEEcccCcCCCCcHHHhc---C----CCCCCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHH
Q 000452 1324 RLSIIPQDPVMFEGTVRSNV---D----PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLG 1396 (1495)
Q Consensus 1324 ~isiIpQdp~LF~GTIR~NL---d----p~~~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LA 1396 (1495)
+|+|-.|.-+=| ..-|. | -+..-+++|+.+.|...|+...+...+ -..||||||=||++|
T Consensus 428 ri~~f~Qhhvd~---l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~s----------i~~LSGGQKsrvafA 494 (582)
T KOG0062|consen 428 RIKYFAQHHVDF---LDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQS----------IASLSGGQKSRVAFA 494 (582)
T ss_pred eecchhHhhhhH---HHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhcc----------ccccCCcchhHHHHH
Confidence 999999987644 22332 2 122338999999999998876554332 145999999999999
Q ss_pred HHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-cCEEEEEeCcEEEEe
Q 000452 1397 RVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGLIEEY 1463 (1495)
Q Consensus 1397 RALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~ 1463 (1495)
-....+|.+|||||||..||.++-..+-++|+.. +.-||+|+|+.+.|.. |+-++|.++|+|.-+
T Consensus 495 ~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F--~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~i 560 (582)
T KOG0062|consen 495 ACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF--NGGVVLVSHDEEFISSLCKELWVVEDGKVTPI 560 (582)
T ss_pred HHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc--CCcEEEEECcHHHHhhcCceeEEEcCCcEEee
Confidence 9999999999999999999999999999999875 4579999999999976 999999999999863
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-42 Score=388.99 Aligned_cols=232 Identities=33% Similarity=0.524 Sum_probs=213.1
Q ss_pred EEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccEE
Q 000452 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSI 1327 (1495)
Q Consensus 1248 I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~isi 1327 (1495)
|+++|++++|+....++|+|+||++++||++||+|++|||||||+++|.|+++|++|+|.+||.++...+...+|+++++
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 57899999997543459999999999999999999999999999999999999999999999999988888888999999
Q ss_pred EcccCcCCCCcHHHhcCCC-CCCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCeE
Q 000452 1328 IPQDPVMFEGTVRSNVDPL-EEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKIL 1406 (1495)
Q Consensus 1328 IpQdp~LF~GTIR~NLdp~-~~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALLr~~~IL 1406 (1495)
+||+|.+|+.|+++|+... ..++.+++.+.++.+++.+.+..+|.|+++.......+||+|||||++|||||+++|+++
T Consensus 81 ~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 160 (234)
T cd03251 81 VSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPIL 160 (234)
T ss_pred eCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999999999999754 345667788888999999999999999999998899999999999999999999999999
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhccCEEEEEeCcEEEEecChhHHhhcCCChHHHH
Q 000452 1407 MLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSFSQL 1480 (1495)
Q Consensus 1407 iLDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~ivE~gsp~~Ll~~~~s~f~~l 1480 (1495)
||||||++||+.+...+.+.|++..++.|+|+++|+++.+..||+|++|++|++++.|+++++.++ .+.|+.+
T Consensus 161 lLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~~ 233 (234)
T cd03251 161 ILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQ-GGVYAKL 233 (234)
T ss_pred EEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHc-Ccchhhh
Confidence 999999999999999999999998788999999999999999999999999999999999999865 4555543
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-42 Score=381.67 Aligned_cols=207 Identities=57% Similarity=0.984 Sum_probs=190.2
Q ss_pred CCCcceEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHH
Q 000452 1242 WPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDL 1321 (1495)
Q Consensus 1242 wp~~g~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~L 1321 (1495)
||..+.++++|++++|+....++|+|+||+|++||.+||+|++|||||||+++|+|+++|.+|+|.+||.++.+.+..++
T Consensus 1 ~~~~~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 80 (207)
T cd03369 1 WPEHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDL 80 (207)
T ss_pred CCCCCeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHH
Confidence 89999999999999997543469999999999999999999999999999999999999999999999999998888889
Q ss_pred hcccEEEcccCcCCCCcHHHhcCCCCCCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHcc
Q 000452 1322 RTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLK 1401 (1495)
Q Consensus 1322 R~~isiIpQdp~LF~GTIR~NLdp~~~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALLr 1401 (1495)
|++++|+||+|.+|++|+++|+..+..++++++.++++ +.+....||+|||||++||||+++
T Consensus 81 ~~~i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~ 142 (207)
T cd03369 81 RSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLK 142 (207)
T ss_pred HhhEEEEecCCcccCccHHHHhcccCCCCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999998665566666666554 234567899999999999999999
Q ss_pred CCCeEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhccCEEEEEeCcEEEEecCh
Q 000452 1402 RRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSP 1466 (1495)
Q Consensus 1402 ~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~ivE~gsp 1466 (1495)
+|+||||||||++||+++...+.+.|++..+++|+|+|+|+++.+..||+|++|++|++++.|+|
T Consensus 143 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 143 RPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 99999999999999999999999999998778999999999999988999999999999999875
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=386.30 Aligned_cols=233 Identities=36% Similarity=0.588 Sum_probs=214.9
Q ss_pred EEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccEE
Q 000452 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSI 1327 (1495)
Q Consensus 1248 I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~isi 1327 (1495)
|+++|++++|+.+ ..+|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.+++..+...+|+.++|
T Consensus 1 l~~~~l~~~~~~~-~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 79 (236)
T cd03253 1 IEFENVTFAYDPG-RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGV 79 (236)
T ss_pred CEEEEEEEEeCCC-CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 5789999999643 359999999999999999999999999999999999999999999999999999888889999999
Q ss_pred EcccCcCCCCcHHHhcCCC-CCCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCeE
Q 000452 1328 IPQDPVMFEGTVRSNVDPL-EEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKIL 1406 (1495)
Q Consensus 1328 IpQdp~LF~GTIR~NLdp~-~~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALLr~~~IL 1406 (1495)
+||+|.+|++|+++|+... ...+++++.++++.+++.+.+..+|.|+++.+.....+||+|||||++|||||+++|++|
T Consensus 80 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~ll 159 (236)
T cd03253 80 VPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPIL 159 (236)
T ss_pred ECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999999999999743 345677888999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhccCEEEEEeCcEEEEecChhHHhhcCCChHHHHHH
Q 000452 1407 MLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSFSQLVA 1482 (1495)
Q Consensus 1407 iLDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~ivE~gsp~~Ll~~~~s~f~~lv~ 1482 (1495)
||||||++||+++...+.+.|++..++.|||+++|+++.+..||++++|++|++++.|+++++.++ .+.|+.++.
T Consensus 160 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~-~~~~~~~~~ 234 (236)
T cd03253 160 LLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAK-GGLYAEMWK 234 (236)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhc-ccHHHHHHh
Confidence 999999999999999999999987668899999999999999999999999999999999999864 566766654
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-42 Score=385.39 Aligned_cols=226 Identities=38% Similarity=0.598 Sum_probs=210.4
Q ss_pred ceEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhccc
Q 000452 1246 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRL 1325 (1495)
Q Consensus 1246 g~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i 1325 (1495)
|.|+++|++++|... .++++|+||+|++||++||+|++|||||||+++|.|+++|.+|+|.+||.++.+.+...+|+++
T Consensus 1 ~~l~~~~l~~~~~~~-~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 79 (229)
T cd03254 1 GEIEFENVNFSYDEK-KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMI 79 (229)
T ss_pred CeEEEEEEEEecCCC-CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhE
Confidence 469999999999643 3599999999999999999999999999999999999999999999999999988888899999
Q ss_pred EEEcccCcCCCCcHHHhcCCCC-CCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCC
Q 000452 1326 SIIPQDPVMFEGTVRSNVDPLE-EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRK 1404 (1495)
Q Consensus 1326 siIpQdp~LF~GTIR~NLdp~~-~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALLr~~~ 1404 (1495)
+|+||+|.+|++|+++|+.... ...++++.++++.+++.+.+..+|.|+++.+.....+||+|||||++|||||+++|+
T Consensus 80 ~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~ 159 (229)
T cd03254 80 GVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPK 159 (229)
T ss_pred EEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999997543 456678889999999999999999999999999999999999999999999999999
Q ss_pred eEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhccCEEEEEeCcEEEEecChhHHhhc
Q 000452 1405 ILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLEN 1472 (1495)
Q Consensus 1405 ILiLDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~ivE~gsp~~Ll~~ 1472 (1495)
+|||||||++||+.+.+.+.+.|++..+++|||+|+|+++.+..||+|++|++|++++.|++++++++
T Consensus 160 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~ 227 (229)
T cd03254 160 ILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK 227 (229)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhh
Confidence 99999999999999999999999987678999999999999988999999999999999999888754
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=401.65 Aligned_cols=224 Identities=27% Similarity=0.436 Sum_probs=194.1
Q ss_pred EEEeeeeEEeCCC--CCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHH---Hh
Q 000452 1248 IDLRDLQVRYAPH--MPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHD---LR 1322 (1495)
Q Consensus 1248 I~f~nv~~~Y~~~--~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~---LR 1322 (1495)
|+++||+++|+.+ ..++|+||||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.|+.+++..+ +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 7899999999632 246999999999999999999999999999999999999999999999999999887654 58
Q ss_pred cccEEEcccCcCCC-CcHHHhcC-CC--CCCC----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHH
Q 000452 1323 TRLSIIPQDPVMFE-GTVRSNVD-PL--EEYT----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVC 1394 (1495)
Q Consensus 1323 ~~isiIpQdp~LF~-GTIR~NLd-p~--~~~s----d~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~ 1394 (1495)
++|++|||++.+|. .|+++|+. |. ...+ ++++.++++.+++.+...+.| ..||||||||++
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~-----------~~LSgGqkQRV~ 150 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYP-----------SNLSGGQKQRVA 150 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHH
Confidence 89999999999995 69999996 22 1223 345778899999987655443 478999999999
Q ss_pred HHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecCchhhhc-cCEEEEEeCcEEEEecChhHHhh
Q 000452 1395 LGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLE 1471 (1495)
Q Consensus 1395 LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~Ll~ 1471 (1495)
|||||+.+|+||+||||||+||++|...|.+.|++..+ +.|||+|||+++.+.. ||+|++|++|+|+|.|++++++.
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 99999999999999999999999999999999998753 7899999999999966 99999999999999999999987
Q ss_pred cCCChH-HHHHH
Q 000452 1472 NKSSSF-SQLVA 1482 (1495)
Q Consensus 1472 ~~~s~f-~~lv~ 1482 (1495)
++...+ ++++.
T Consensus 231 ~p~~~~~~~~~~ 242 (343)
T TIGR02314 231 HPKTPLAQKFIR 242 (343)
T ss_pred CCCcHHHHHHHh
Confidence 654433 44443
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-41 Score=384.00 Aligned_cols=233 Identities=34% Similarity=0.609 Sum_probs=211.9
Q ss_pred EEEeeeeEEeCCC-CCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccE
Q 000452 1248 IDLRDLQVRYAPH-MPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLS 1326 (1495)
Q Consensus 1248 I~f~nv~~~Y~~~-~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~is 1326 (1495)
|+++|++++|+.. ..++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++...+....|++++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 5789999999653 246999999999999999999999999999999999999999999999999998888888888999
Q ss_pred EEcccCcCCCCcHHHhcCCC-CCCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCe
Q 000452 1327 IIPQDPVMFEGTVRSNVDPL-EEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKI 1405 (1495)
Q Consensus 1327 iIpQdp~LF~GTIR~NLdp~-~~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALLr~~~I 1405 (1495)
|+||+|.+|+.|+++|+... .....+++.+.++.+++.+.+..+|.|+++.......+||+|||||++|||||+.+|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999753 34456778888999999999999999999999988999999999999999999999999
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhccCEEEEEeCcEEEEecChhHHhhcCCChHHHHH
Q 000452 1406 LMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSFSQLV 1481 (1495)
Q Consensus 1406 LiLDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~ivE~gsp~~Ll~~~~s~f~~lv 1481 (1495)
|||||||++||+.+...+.+.|++..+++|||+++|+++.+..||+|++|++|++++.|+++++.+. .+..++++
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~~~ 235 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQ-KGVYAKLV 235 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhc-ChhHHHHh
Confidence 9999999999999999999999987678999999999999989999999999999999999998864 44555443
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-41 Score=378.15 Aligned_cols=219 Identities=35% Similarity=0.537 Sum_probs=202.2
Q ss_pred ceEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhccc
Q 000452 1246 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRL 1325 (1495)
Q Consensus 1246 g~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i 1325 (1495)
|+|+++|++++|+....++|+|+||+|++||++||+|++|||||||+++|.|+.+|++|+|.++|.++...+...+|+++
T Consensus 1 ~~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 1 GRIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred CeEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 46899999999965334599999999999999999999999999999999999999999999999999888877888999
Q ss_pred EEEcccCcCCCCcHHHhcCCC-CCCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCC
Q 000452 1326 SIIPQDPVMFEGTVRSNVDPL-EEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRK 1404 (1495)
Q Consensus 1326 siIpQdp~LF~GTIR~NLdp~-~~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALLr~~~ 1404 (1495)
+|+||+|.+|..|+++|+... ...+++++.++++..++.+.+...|.|+++.+.+...+||||||||++||||++.+|+
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 160 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPP 160 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999743 2345667888999999999999999999999999999999999999999999999999
Q ss_pred eEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhccCEEEEEeCcEEEEec
Q 000452 1405 ILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYD 1464 (1495)
Q Consensus 1405 ILiLDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~ivE~g 1464 (1495)
+|||||||++||.++...+.+.|++..+++|||+++|+++.+..||+|++|++|++++.|
T Consensus 161 llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 161 ILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 999999999999999999999999886678999999999988889999999999998764
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-41 Score=362.23 Aligned_cols=226 Identities=28% Similarity=0.426 Sum_probs=191.1
Q ss_pred eEEEeeeeEEeCCCC--CcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCC-HHHHhc
Q 000452 1247 KIDLRDLQVRYAPHM--PFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIG-LHDLRT 1323 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~~--~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~-l~~LR~ 1323 (1495)
.++++|+++.|+.+. -++|+||||+|.+||.+||||+||||||||.++|.|+.+|++|+|.+||.+..... .+..++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 488999999997653 25999999999999999999999999999999999999999999999997766543 446788
Q ss_pred ccEEEcccCc--CC-CCcHHHhcC-CCCC----CCHHHHHHHHHHcCCcHHH-HhccCCcccccccCCCCCCchHHHHHH
Q 000452 1324 RLSIIPQDPV--MF-EGTVRSNVD-PLEE----YTDEQIWEALDKCQLGDEV-RKKEGKLDSKVTENGENWSMGQRQLVC 1394 (1495)
Q Consensus 1324 ~isiIpQdp~--LF-~GTIR~NLd-p~~~----~sd~ei~~aL~~~~L~~~v-~~lp~gLdt~v~e~G~nLS~GQrQrl~ 1394 (1495)
.+.+|+|||. |= .-||++-|. |... -..++++++|+.+||.+.+ ...| ..||||||||+|
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P-----------~eLSGGQ~QRia 151 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRP-----------HELSGGQRQRIA 151 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCc-----------hhcChhHHHHHH
Confidence 9999999995 22 237777764 4432 2345699999999997654 3444 358999999999
Q ss_pred HHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcCCc--EEEEEecCchhhhc-cCEEEEEeCcEEEEecChhHHhh
Q 000452 1395 LGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDC--TVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLE 1471 (1495)
Q Consensus 1395 LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~~~--TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~Ll~ 1471 (1495)
|||||.-+|++||+|||||+||.-..+.|.+.+.+..+++ |.|+|+|++..+.. ||||+||++|+++|.++-+++..
T Consensus 152 IARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 152 IARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLS 231 (252)
T ss_pred HHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhc
Confidence 9999999999999999999999999999999998876654 99999999999987 99999999999999999999997
Q ss_pred cCCChHHHHHHH
Q 000452 1472 NKSSSFSQLVAE 1483 (1495)
Q Consensus 1472 ~~~s~f~~lv~~ 1483 (1495)
.+...|.+..-+
T Consensus 232 ~~~h~ytr~Ll~ 243 (252)
T COG1124 232 HPSHPYTRELLE 243 (252)
T ss_pred CCccHHHHHHHH
Confidence 755555544433
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-40 Score=417.83 Aligned_cols=199 Identities=25% Similarity=0.311 Sum_probs=168.3
Q ss_pred CCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccc--CCccEEEEcCEeCCCCCHHHHhcccEEEcccC-cCCC
Q 000452 1260 HMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVE--PAAGQILIDGIDISLIGLHDLRTRLSIIPQDP-VMFE 1336 (1495)
Q Consensus 1260 ~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~e--p~~G~I~IDG~dI~~i~l~~LR~~isiIpQdp-~LF~ 1336 (1495)
+....|+|||=-++||.-+|++|.||||||||++.|.+-.. ..+|+|+|||.+..+ +..++++|||-|++ ++=+
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~~GYvqQ~DiH~~~ 878 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARVSGYVEQQDIHSPE 878 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccccceeecccccCcc
Confidence 44568999999999999999999999999999999998754 357999999998765 77899999999987 4656
Q ss_pred CcHHHhcCC------CCCCCHHH----HHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCC-Ce
Q 000452 1337 GTVRSNVDP------LEEYTDEQ----IWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRR-KI 1405 (1495)
Q Consensus 1337 GTIR~NLdp------~~~~sd~e----i~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALLr~~-~I 1405 (1495)
-||||-|.. -.+.+++| +.++.+..+|.+. =|..||.-|..||..||.||.||--|+.|| .|
T Consensus 879 ~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~-------~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~i 951 (1391)
T KOG0065|consen 879 LTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEY-------ADALVGLPGSGLSTEQRKRLTIGVELVANPSSI 951 (1391)
T ss_pred cchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhh-------hhhhccCCCCCCCHHHhceeeEEEEEecCCcee
Confidence 699999852 12455554 4556666666543 356788889999999999999999999999 89
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhh--hccCEEEEEeC-cEEEEecChhH
Q 000452 1406 LMLDEATASVDTATDNLIQQSLRQHF-SDCTVITIAHRITSV--IDSDMVLLLSH-GLIEEYDSPRK 1468 (1495)
Q Consensus 1406 LiLDEaTsslD~~Td~~Iq~~Ir~~f-~~~TVI~IAHRl~ti--~~~DrIlVL~~-G~ivE~gsp~~ 1468 (1495)
|.||||||+||+++...|.+++|+.. .|+||++.-|.++.. ..+|+++.|++ |+.|-+|++.+
T Consensus 952 lFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 952 LFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred EEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccc
Confidence 99999999999999999999999876 689999999999863 56999999976 69999988654
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-41 Score=395.51 Aligned_cols=218 Identities=26% Similarity=0.361 Sum_probs=185.7
Q ss_pred cceEEEeeeeEEeCCCC---CcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCC-----
Q 000452 1245 HGKIDLRDLQVRYAPHM---PFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLI----- 1316 (1495)
Q Consensus 1245 ~g~I~f~nv~~~Y~~~~---~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i----- 1316 (1495)
...|+++|++++|+... .++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.
T Consensus 19 ~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~ 98 (320)
T PRK13631 19 DIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHE 98 (320)
T ss_pred CceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccc
Confidence 34699999999997432 3599999999999999999999999999999999999999999999999998753
Q ss_pred -----------CHHHHhcccEEEcccC--cCCCCcHHHhcCCCC---CCCHHH----HHHHHHHcCCcHHHHhccCCccc
Q 000452 1317 -----------GLHDLRTRLSIIPQDP--VMFEGTVRSNVDPLE---EYTDEQ----IWEALDKCQLGDEVRKKEGKLDS 1376 (1495)
Q Consensus 1317 -----------~l~~LR~~isiIpQdp--~LF~GTIR~NLdp~~---~~sd~e----i~~aL~~~~L~~~v~~lp~gLdt 1376 (1495)
....+|++++|+||+| .+|++|+++|+.... ..++++ +.++++.+++.+ .
T Consensus 99 ~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~----------~ 168 (320)
T PRK13631 99 LITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDD----------S 168 (320)
T ss_pred ccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCCh----------h
Confidence 3567899999999998 699999999996321 233333 334455555431 2
Q ss_pred ccccCCCCCCchHHHHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhh-ccCEEEE
Q 000452 1377 KVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHF-SDCTVITIAHRITSVI-DSDMVLL 1454 (1495)
Q Consensus 1377 ~v~e~G~nLS~GQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f-~~~TVI~IAHRl~ti~-~~DrIlV 1454 (1495)
.....+.+||||||||++|||||+++|+||||||||++||+.+...+.+.|++.. +++|||+|||+++.+. .||+|++
T Consensus 169 ~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~v 248 (320)
T PRK13631 169 YLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIV 248 (320)
T ss_pred HhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEE
Confidence 3455677899999999999999999999999999999999999999999998753 4789999999999874 6999999
Q ss_pred EeCcEEEEecChhHHhhc
Q 000452 1455 LSHGLIEEYDSPRKLLEN 1472 (1495)
Q Consensus 1455 L~~G~ivE~gsp~~Ll~~ 1472 (1495)
|++|++++.|+|++++++
T Consensus 249 l~~G~i~~~g~~~~~~~~ 266 (320)
T PRK13631 249 MDKGKILKTGTPYEIFTD 266 (320)
T ss_pred EECCEEEEeCCHHHHhcC
Confidence 999999999999988754
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-41 Score=379.64 Aligned_cols=211 Identities=32% Similarity=0.526 Sum_probs=186.5
Q ss_pred EEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccc-----cCCccEEEEcCEeCCCCC--HHH
Q 000452 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIV-----EPAAGQILIDGIDISLIG--LHD 1320 (1495)
Q Consensus 1248 I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~-----ep~~G~I~IDG~dI~~i~--l~~ 1320 (1495)
|+++||+++|+.. ++|+|+||+|++||++||+|+||||||||+++|+|++ +|.+|+|.+||.++.+.+ ...
T Consensus 1 i~~~~l~~~~~~~--~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 78 (227)
T cd03260 1 IELRDLNVYYGDK--HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLE 78 (227)
T ss_pred CEEEEEEEEcCCc--eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHH
Confidence 5789999999643 5999999999999999999999999999999999999 999999999999998877 667
Q ss_pred HhcccEEEcccCcCCCCcHHHhcCCCC---C-C----CHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHH
Q 000452 1321 LRTRLSIIPQDPVMFEGTVRSNVDPLE---E-Y----TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQL 1392 (1495)
Q Consensus 1321 LR~~isiIpQdp~LF~GTIR~NLdp~~---~-~----sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQr 1392 (1495)
+|++++|+||+|.+|..|+++|+.... . . .++++.++++.+++.+...+.++ +.+||||||||
T Consensus 79 ~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~LSgG~~qr 149 (227)
T cd03260 79 LRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGLSGGQQQR 149 (227)
T ss_pred HHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccCCHHHHHH
Confidence 889999999999999889999996421 1 1 23567888999988766544321 46799999999
Q ss_pred HHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-cCEEEEEeCcEEEEecChhHH
Q 000452 1393 VCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKL 1469 (1495)
Q Consensus 1393 l~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~L 1469 (1495)
++|||||+++|++|||||||++||+++...+.+.|++..+++|||+|+|+++.+.. ||+|++|++|++++.|+|+++
T Consensus 150 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (227)
T cd03260 150 LCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227 (227)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcccC
Confidence 99999999999999999999999999999999999988666899999999998875 999999999999999998764
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=374.61 Aligned_cols=213 Identities=31% Similarity=0.490 Sum_probs=188.8
Q ss_pred eEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccE
Q 000452 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLS 1326 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~is 1326 (1495)
.++++|++++|.. .++|+|+||+|++||.++|+||||||||||+++|.|+.+|.+|+|.+||.||.+++.+++.++++
T Consensus 2 ~L~~~~ls~~y~~--~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia 79 (258)
T COG1120 2 MLEVENLSFGYGG--KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLA 79 (258)
T ss_pred eeEEEEEEEEECC--eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEE
Confidence 4789999999973 46999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcccCcC-CCCcHHHhcC----C----CCCCC--HH-HHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHH
Q 000452 1327 IIPQDPVM-FEGTVRSNVD----P----LEEYT--DE-QIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVC 1394 (1495)
Q Consensus 1327 iIpQdp~L-F~GTIR~NLd----p----~~~~s--d~-ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~ 1394 (1495)
|+||++.. |.-||+|=+. | +...+ |+ .+.+||+.+++.++..+. + ..||||||||++
T Consensus 80 ~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~---~--------~~LSGGerQrv~ 148 (258)
T COG1120 80 YVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRP---V--------DELSGGERQRVL 148 (258)
T ss_pred EeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCc---c--------cccChhHHHHHH
Confidence 99999754 4559988763 2 22223 33 478889999998876442 2 358999999999
Q ss_pred HHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCchh-hhccCEEEEEeCcEEEEecChhHHhh
Q 000452 1395 LGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHF--SDCTVITIAHRITS-VIDSDMVLLLSHGLIEEYDSPRKLLE 1471 (1495)
Q Consensus 1395 LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f--~~~TVI~IAHRl~t-i~~~DrIlVL~~G~ivE~gsp~~Ll~ 1471 (1495)
|||||.++|+||+|||||++||....-.+.+.+++.- ++.|||+|.|+++. .+.||++++|++|+++..|+|++.+.
T Consensus 149 iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT 228 (258)
T COG1120 149 IARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLT 228 (258)
T ss_pred HHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcC
Confidence 9999999999999999999999999999999999876 36999999999976 56799999999999999999999985
Q ss_pred c
Q 000452 1472 N 1472 (1495)
Q Consensus 1472 ~ 1472 (1495)
.
T Consensus 229 ~ 229 (258)
T COG1120 229 E 229 (258)
T ss_pred H
Confidence 4
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-41 Score=357.40 Aligned_cols=224 Identities=29% Similarity=0.474 Sum_probs=197.2
Q ss_pred ceEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHH---HHh
Q 000452 1246 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLH---DLR 1322 (1495)
Q Consensus 1246 g~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~---~LR 1322 (1495)
-.|++++|+++|..+ .||+||||+|++||.+||+|+||||||||++++.|+..|++|+|.|+|.||.+++-+ .+|
T Consensus 7 ~~I~vr~v~~~fG~~--~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir 84 (263)
T COG1127 7 PLIEVRGVTKSFGDR--VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIR 84 (263)
T ss_pred ceEEEeeeeeecCCE--EEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHH
Confidence 369999999999654 599999999999999999999999999999999999999999999999999999864 469
Q ss_pred cccEEEcccCcCCCC-cHHHhcC-CCCCC---CHHHH----HHHHHHcCCcHHH-HhccCCcccccccCCCCCCchHHHH
Q 000452 1323 TRLSIIPQDPVMFEG-TVRSNVD-PLEEY---TDEQI----WEALDKCQLGDEV-RKKEGKLDSKVTENGENWSMGQRQL 1392 (1495)
Q Consensus 1323 ~~isiIpQdp~LF~G-TIR~NLd-p~~~~---sd~ei----~~aL~~~~L~~~v-~~lp~gLdt~v~e~G~nLS~GQrQr 1392 (1495)
+++|++.|.-.||+. ||+||+. |..+| +++++ ..-|+.|||...+ ...| +.||||.|.|
T Consensus 85 ~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P-----------sELSGGM~KR 153 (263)
T COG1127 85 KRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP-----------SELSGGMRKR 153 (263)
T ss_pred hheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc-----------hhhcchHHHH
Confidence 999999999999988 9999997 55544 44444 3457888888774 3333 4689999999
Q ss_pred HHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCchhhhc-cCEEEEEeCcEEEEecChhHH
Q 000452 1393 VCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHF--SDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKL 1469 (1495)
Q Consensus 1393 l~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f--~~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~L 1469 (1495)
++||||+.-+|+||++|||||++|+.+...+-+.|++.- -+.|+|+|||+++++.. ||||+++.+|+|+-+|+|++|
T Consensus 154 vaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el 233 (263)
T COG1127 154 VALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEEL 233 (263)
T ss_pred HHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHH
Confidence 999999999999999999999999999999888887754 37899999999999876 799999999999999999999
Q ss_pred hhcCCChHHHHHH
Q 000452 1470 LENKSSSFSQLVA 1482 (1495)
Q Consensus 1470 l~~~~s~f~~lv~ 1482 (1495)
.+.++...++.+.
T Consensus 234 ~~sd~P~v~qf~~ 246 (263)
T COG1127 234 LASDDPWVRQFFN 246 (263)
T ss_pred HhCCCHHHHHHhc
Confidence 9988766666554
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-41 Score=373.15 Aligned_cols=215 Identities=29% Similarity=0.458 Sum_probs=196.1
Q ss_pred eEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCC-CCCHHHHhccc
Q 000452 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDIS-LIGLHDLRTRL 1325 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~-~i~l~~LR~~i 1325 (1495)
.|+++|++|+|.++ .++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|.|.+||.+++ ..+...+|+++
T Consensus 3 ~i~~~~l~~~y~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~v 81 (235)
T COG1122 3 MIEAENLSFRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKV 81 (235)
T ss_pred eEEEEEEEEEcCCC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcce
Confidence 58999999999887 77999999999999999999999999999999999999999999999999999 48899999999
Q ss_pred EEEcccC--cCCCCcHHHhcCCCC---CCCH----HHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHH
Q 000452 1326 SIIPQDP--VMFEGTVRSNVDPLE---EYTD----EQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLG 1396 (1495)
Q Consensus 1326 siIpQdp--~LF~GTIR~NLdp~~---~~sd----~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LA 1396 (1495)
|+|.|+| .+|..||.+.+.+.. ..+. +.+.++|+.+++.++....| .+||||||||++||
T Consensus 82 G~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p-----------~~LSGGqkqRvaIA 150 (235)
T COG1122 82 GLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPP-----------FNLSGGQKQRVAIA 150 (235)
T ss_pred EEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCc-----------cccCCcceeeHHhh
Confidence 9999999 799999999997432 3444 34788999999987744443 57899999999999
Q ss_pred HHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecCchhhhc-cCEEEEEeCcEEEEecChhHHhhcC
Q 000452 1397 RVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLENK 1473 (1495)
Q Consensus 1397 RALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~Ll~~~ 1473 (1495)
.+|..+|+|||||||||+||+...+.+.+.+++... +.|+|+|+|+++.+.+ ||||+||++|+++.+|+|++++++.
T Consensus 151 ~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~~ 230 (235)
T COG1122 151 GVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDA 230 (235)
T ss_pred HHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhhh
Confidence 999999999999999999999999999999998764 4799999999999998 9999999999999999999999764
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-41 Score=365.73 Aligned_cols=187 Identities=38% Similarity=0.457 Sum_probs=163.7
Q ss_pred cEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe--------EEEEcc
Q 000452 617 AIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT--------KAYVAQ 688 (1495)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~--------~ayv~Q 688 (1495)
.+++++++++|.. ..+|+|+||+|++||+++|+|||||||||||++|.|+.+|++|+|.++|. ++||+|
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ 79 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQ 79 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEec
Confidence 5889999999963 67999999999999999999999999999999999999999999999884 599999
Q ss_pred CCcccC-ccHHHHHhcCCCCC-------HHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHHHHHhccC
Q 000452 689 SPWIQS-GKIEDNILFGKEMD-------RERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQD 760 (1495)
Q Consensus 689 ~~~l~~-~ti~enI~fg~~~~-------~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~ 760 (1495)
++-++. .||+|||.||.+.. +++.++.++.++|...-+ ..+.+|||||||||+|||||..+
T Consensus 80 ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~-----------~~P~qLSGGMrQRVaiARAL~~~ 148 (248)
T COG1116 80 EDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFED-----------KYPHQLSGGMRQRVAIARALATR 148 (248)
T ss_pred cCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhh-----------cCccccChHHHHHHHHHHHHhcC
Confidence 987765 59999999987642 345667777777765443 56789999999999999999999
Q ss_pred CCEeEecCcCCccCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCcccc-CCEEEEEeCC
Q 000452 761 ADIYLFDDPFSAVDAHTGSHLFKEVLLGLL-NSKTVLYVTHQVEFLPA-ADLVLVIKDG 817 (1495)
Q Consensus 761 ~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvIlvTH~~~~l~~-~d~i~~l~~G 817 (1495)
|+|+||||||+|||+.|+.++.+++..-+. .++||++||||+++.-. +|||++|.++
T Consensus 149 P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 149 PKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred CCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 999999999999999999998877665554 37999999999998654 9999999984
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-41 Score=379.15 Aligned_cols=212 Identities=29% Similarity=0.436 Sum_probs=186.0
Q ss_pred EEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCH---HHHhcc
Q 000452 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGL---HDLRTR 1324 (1495)
Q Consensus 1248 I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l---~~LR~~ 1324 (1495)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. ..+|++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 78 (235)
T cd03261 1 IELRGLTKSFGG--RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRR 78 (235)
T ss_pred CeEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcc
Confidence 578999999964 359999999999999999999999999999999999999999999999999988764 567889
Q ss_pred cEEEcccCcCCCC-cHHHhcCCC----CCCC----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHH
Q 000452 1325 LSIIPQDPVMFEG-TVRSNVDPL----EEYT----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCL 1395 (1495)
Q Consensus 1325 isiIpQdp~LF~G-TIR~NLdp~----~~~s----d~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~L 1395 (1495)
++|+||+|.+|.+ |+++|+... ...+ ++++.++++.+++.+...+.+ .+||||||||++|
T Consensus 79 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~i 147 (235)
T cd03261 79 MGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYP-----------AELSGGMKKRVAL 147 (235)
T ss_pred eEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHH
Confidence 9999999999987 999999632 1123 234677888888866543332 4699999999999
Q ss_pred HHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecCchhhhc-cCEEEEEeCcEEEEecChhHHhhc
Q 000452 1396 GRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLEN 1472 (1495)
Q Consensus 1396 ARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~Ll~~ 1472 (1495)
||||+++|+||||||||++||+.+...+.+.|++..+ ++|||+|+|+++.+.. ||+|++|++|++++.|+++++++.
T Consensus 148 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 227 (235)
T cd03261 148 ARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRAS 227 (235)
T ss_pred HHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcCC
Confidence 9999999999999999999999999999999998653 7899999999998875 999999999999999999998754
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-41 Score=360.44 Aligned_cols=203 Identities=29% Similarity=0.421 Sum_probs=176.0
Q ss_pred EEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe-------------EE
Q 000452 618 IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------KA 684 (1495)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~-------------~a 684 (1495)
|+++|+++.|. ++.+++|+||+|++||+++++|||||||||+|+.|.++++|++|+|.++|. +|
T Consensus 2 I~~~nvsk~y~---~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 2 IEFENVSKRYG---NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred ceeeeeehhcC---CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh
Confidence 78999999996 468999999999999999999999999999999999999999999999994 69
Q ss_pred EEccCCccc-CccHHHHHhcCCC---CCH----HHHHHHHHHhCcHH-HHhhcCCCCcccccCCCCccchHHHHHHHHHH
Q 000452 685 YVAQSPWIQ-SGKIEDNILFGKE---MDR----ERYNAVLDACSLEK-DLEILSFGDQTVVGERGINLSGGQKQRIQIAR 755 (1495)
Q Consensus 685 yv~Q~~~l~-~~ti~enI~fg~~---~~~----~~~~~vl~~~~l~~-dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LAR 755 (1495)
||-|+.-+| +.||.|||.+-.. +++ +|.++.++..+|++ +. ..+.+.+|||||+|||.+||
T Consensus 79 YviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~----------~~RyP~eLSGGQQQRVGv~R 148 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEY----------ADRYPHELSGGQQQRVGVAR 148 (309)
T ss_pred hhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHH----------hhcCchhcCcchhhHHHHHH
Confidence 999998887 5799999987543 344 34556666677754 23 24678999999999999999
Q ss_pred HhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCcc-ccCCEEEEEeCCEEEEecChHHHHhcCC
Q 000452 756 ALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL-NSKTVLYVTHQVEFL-PAADLVLVIKDGKITQAGKYTDVINSGT 833 (1495)
Q Consensus 756 Al~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvIlvTH~~~~l-~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 833 (1495)
||..+|+|+|+||||+||||-++..+-+++..-.. -+||+|+||||+++. ..+|+|.+|++|+|++.+++++++.+..
T Consensus 149 ALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~Pa 228 (309)
T COG1125 149 ALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPA 228 (309)
T ss_pred HHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCcc
Confidence 99999999999999999999999998766554333 389999999999985 5699999999999999999999997643
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-41 Score=369.43 Aligned_cols=209 Identities=29% Similarity=0.429 Sum_probs=184.2
Q ss_pred eEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccE
Q 000452 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLS 1326 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~is 1326 (1495)
.|+++|++++|..+ + ||+||||+|++||.+||+||||||||||+++++|+++|++|+|.++|.+++.... +.+||
T Consensus 4 ~i~v~nl~v~y~~~-~-vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~Ig 78 (254)
T COG1121 4 MIEVENLTVSYGNR-P-VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRIG 78 (254)
T ss_pred EEEEeeeEEEECCE-e-eeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeEE
Confidence 59999999999865 4 9999999999999999999999999999999999999999999999988765432 57899
Q ss_pred EEcccC---cCCCCcHHHhcCCC--------C---CCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHH
Q 000452 1327 IIPQDP---VMFEGTVRSNVDPL--------E---EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQL 1392 (1495)
Q Consensus 1327 iIpQdp---~LF~GTIR~NLdp~--------~---~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQr 1392 (1495)
||||.. .-|+-||+|=+... . ..+.+++.+||+++++.++..+ +++ .|||||+||
T Consensus 79 YVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r-------~i~----~LSGGQ~QR 147 (254)
T COG1121 79 YVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDR-------QIG----ELSGGQKQR 147 (254)
T ss_pred EcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCC-------ccc----ccCcHHHHH
Confidence 999965 46888999987532 1 1234789999999999977543 333 599999999
Q ss_pred HHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcC-CcEEEEEecCchhhhc-cCEEEEEeCcEEEEecChhHHh
Q 000452 1393 VCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFS-DCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLL 1470 (1495)
Q Consensus 1393 l~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~-~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~Ll 1470 (1495)
+.|||||+++|++|+|||||++||+.++..|.+.|++..+ +|||++|+|+++.+++ ||+|+.|+ +++...|+|++.+
T Consensus 148 V~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~~~~ 226 (254)
T COG1121 148 VLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEEVL 226 (254)
T ss_pred HHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChhhcc
Confidence 9999999999999999999999999999999999988764 8999999999999976 99999995 6788999999998
Q ss_pred hc
Q 000452 1471 EN 1472 (1495)
Q Consensus 1471 ~~ 1472 (1495)
..
T Consensus 227 ~~ 228 (254)
T COG1121 227 TE 228 (254)
T ss_pred CH
Confidence 64
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=381.29 Aligned_cols=222 Identities=26% Similarity=0.353 Sum_probs=199.8
Q ss_pred cEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcC-------------eE
Q 000452 617 AIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG-------------TK 683 (1495)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g-------------~~ 683 (1495)
.|+++|++++|+.+ ..++|+|+||+|++||+++|+|+||||||||+++|.|+++ .+|+|.++| .+
T Consensus 2 ~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 2 QMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred eEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence 48899999999632 3579999999999999999999999999999999999998 799999998 36
Q ss_pred EEEccCCcccCccHHHHHhcCCCCCHHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHHHHHhccCCCE
Q 000452 684 AYVAQSPWIQSGKIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADI 763 (1495)
Q Consensus 684 ayv~Q~~~l~~~ti~enI~fg~~~~~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~i 763 (1495)
+|+||+|+++++|++||+....++++++..++++.++|.+.++.+|.+.+|.+++.|.+||||||||++||||++.+|+|
T Consensus 80 ~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~i 159 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI 159 (275)
T ss_pred EEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999964445677888899999999999999999999999999999999999999999999999999
Q ss_pred eEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEecCCCccccCCEEEEEeCCEEEEecChHHHHhcCCchhHHHHH
Q 000452 764 YLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVINSGTDFMELVDA 841 (1495)
Q Consensus 764 llLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~l~~~ 841 (1495)
+||||||++||+.+.+.+.+ .+....+++|+|+|||+++.+..||+|++|++|++++.|+++++++....|.+++..
T Consensus 160 lllDEpts~LD~~~~~~l~~-~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~ 236 (275)
T cd03289 160 LLLDEPSAHLDPITYQVIRK-TLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQAISP 236 (275)
T ss_pred EEEECccccCCHHHHHHHHH-HHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhCcHHHHHHHhh
Confidence 99999999999999877764 455555689999999999988889999999999999999999999876556666543
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-40 Score=375.43 Aligned_cols=221 Identities=30% Similarity=0.498 Sum_probs=193.6
Q ss_pred eEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccE
Q 000452 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLS 1326 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~is 1326 (1495)
.++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.|+...+..++|++++
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 80 (241)
T PRK14250 3 EIEFKEVSYSSFG--KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIG 80 (241)
T ss_pred eEEEEeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEE
Confidence 4899999999964 35999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEcccCcCCCCcHHHhcCCCC---CCCHHHHHHHHHHcCCc-HHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccC
Q 000452 1327 IIPQDPVMFEGTVRSNVDPLE---EYTDEQIWEALDKCQLG-DEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKR 1402 (1495)
Q Consensus 1327 iIpQdp~LF~GTIR~NLdp~~---~~sd~ei~~aL~~~~L~-~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALLr~ 1402 (1495)
|+||+|.+|+.|+++|+.... ...++++.+.++..++. +... .....||+|||||++||||++++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~~LS~G~~qrl~la~al~~~ 149 (241)
T PRK14250 81 MVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYAT-----------RDVKNLSGGEAQRVSIARTLANN 149 (241)
T ss_pred EEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhh-----------CCcccCCHHHHHHHHHHHHHhcC
Confidence 999999999999999997422 22345678888888875 2222 23457999999999999999999
Q ss_pred CCeEEEEcCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCchhhhc-cCEEEEEeCcEEEEecChhHHhhcCCChHHH
Q 000452 1403 RKILMLDEATASVDTATDNLIQQSLRQHF--SDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLENKSSSFSQ 1479 (1495)
Q Consensus 1403 ~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f--~~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~Ll~~~~s~f~~ 1479 (1495)
|++|||||||++||.++...+.+.|++.. .++|||+|||+++.+.. ||+|++|++|++++.|++++++.++...+.+
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~ 229 (241)
T PRK14250 150 PEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVTK 229 (241)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcCCCcHHHH
Confidence 99999999999999999999999999864 37899999999999875 9999999999999999999998765444544
Q ss_pred H
Q 000452 1480 L 1480 (1495)
Q Consensus 1480 l 1480 (1495)
.
T Consensus 230 ~ 230 (241)
T PRK14250 230 L 230 (241)
T ss_pred H
Confidence 3
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=377.85 Aligned_cols=218 Identities=24% Similarity=0.413 Sum_probs=193.5
Q ss_pred eEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccc---CCccEEEEcCEeCCCCCHHHHhc
Q 000452 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVE---PAAGQILIDGIDISLIGLHDLRT 1323 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~e---p~~G~I~IDG~dI~~i~l~~LR~ 1323 (1495)
.|+++|++++|+. +++|+|+||+|++||.+||+|+||||||||+++|+|+++ |++|+|.+||.|+.+.+...+|+
T Consensus 2 ~~~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 79 (246)
T PRK14269 2 IAKTTNLNLFYGK--KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRK 79 (246)
T ss_pred ceeeeeeEEEECC--EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhh
Confidence 4789999999964 459999999999999999999999999999999999985 68999999999999888888899
Q ss_pred ccEEEcccCcCCCCcHHHhcCCCC---C------CCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHH
Q 000452 1324 RLSIIPQDPVMFEGTVRSNVDPLE---E------YTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVC 1394 (1495)
Q Consensus 1324 ~isiIpQdp~LF~GTIR~NLdp~~---~------~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~ 1394 (1495)
+++|+||+|.+|..|+++|+.... . ..++++.++++.+++.+.+..+ ..+.+.+||+|||||++
T Consensus 80 ~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~~~LS~G~~qrv~ 152 (246)
T PRK14269 80 NVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDK-------LKQNALALSGGQQQRLC 152 (246)
T ss_pred hEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHH-------hcCCcccCCHHHHHHHH
Confidence 999999999999999999996421 1 1234578889999987665432 23456789999999999
Q ss_pred HHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhh-ccCEEEEEeCcEEEEecChhHHhhcC
Q 000452 1395 LGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVI-DSDMVLLLSHGLIEEYDSPRKLLENK 1473 (1495)
Q Consensus 1395 LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~-~~DrIlVL~~G~ivE~gsp~~Ll~~~ 1473 (1495)
|||||+++|+||+|||||++||..+...+.+.|++..+++|+|+|||+++.+. .||+|++|++|++++.|+++++...+
T Consensus 153 laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 232 (246)
T PRK14269 153 IARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFENP 232 (246)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhCC
Confidence 99999999999999999999999999999999998777899999999999886 59999999999999999999998654
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-41 Score=368.32 Aligned_cols=204 Identities=28% Similarity=0.399 Sum_probs=174.3
Q ss_pred cEEEEeeEEEecCCC--CCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe------------
Q 000452 617 AIEIADGNFSWDISS--HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------ 682 (1495)
Q Consensus 617 ~i~~~~~~~~~~~~~--~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~------------ 682 (1495)
.|+++++++.|.... ..++|+||||+|++||+.+|+|.||+|||||+++|.++-.|++|+|.++|.
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~ 80 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQ 80 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHH
Confidence 378999999997521 246899999999999999999999999999999999999999999999993
Q ss_pred ----EEEEccCCcccC-ccHHHHHhcCCCC---C-HH---HHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHH
Q 000452 683 ----KAYVAQSPWIQS-GKIEDNILFGKEM---D-RE---RYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQR 750 (1495)
Q Consensus 683 ----~ayv~Q~~~l~~-~ti~enI~fg~~~---~-~~---~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqR 750 (1495)
+|+++|++.+++ .||.+||.|..+. + ++ |..+.++-.+|.+.. +..+.+||||||||
T Consensus 81 ~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~-----------~~yP~qLSGGQKQR 149 (339)
T COG1135 81 LRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKA-----------DRYPAQLSGGQKQR 149 (339)
T ss_pred HHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhh-----------ccCchhcCcchhhH
Confidence 699999999886 7999999997542 2 23 333444445554322 46789999999999
Q ss_pred HHHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHH--hCCCEEEEEecCCCcccc-CCEEEEEeCCEEEEecChHH
Q 000452 751 IQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL--LNSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYTD 827 (1495)
Q Consensus 751 v~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~--~~~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 827 (1495)
|+|||||..+|+|+|.|||||||||++.+.|.+. +... .-|-|+++|||.++.++. ||++.+|++|++++.|+..|
T Consensus 150 VaIARALa~~P~iLL~DEaTSALDP~TT~sIL~L-L~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~ 228 (339)
T COG1135 150 VAIARALANNPKILLCDEATSALDPETTQSILEL-LKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSE 228 (339)
T ss_pred HHHHHHHhcCCCEEEecCccccCChHHHHHHHHH-HHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHH
Confidence 9999999999999999999999999999999864 4333 238999999999999987 99999999999999999999
Q ss_pred HHhcC
Q 000452 828 VINSG 832 (1495)
Q Consensus 828 l~~~~ 832 (1495)
+....
T Consensus 229 vF~~P 233 (339)
T COG1135 229 VFANP 233 (339)
T ss_pred hhcCc
Confidence 88654
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=381.86 Aligned_cols=217 Identities=24% Similarity=0.434 Sum_probs=196.2
Q ss_pred eEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccE
Q 000452 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLS 1326 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~is 1326 (1495)
.|+++||+.+|.... ||+|||++|+.||.++++||||||||||+++|.||.+|++|+|.|||.|++++++.+ +.|+
T Consensus 3 ~i~l~~v~K~yg~~~--~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~ia 78 (338)
T COG3839 3 ELELKNVRKSFGSFE--VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGIA 78 (338)
T ss_pred EEEEeeeEEEcCCce--eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCEE
Confidence 689999999997654 999999999999999999999999999999999999999999999999999999886 7899
Q ss_pred EEcccCcCCCC-cHHHhcCC-CC------CCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHH
Q 000452 1327 IIPQDPVMFEG-TVRSNVDP-LE------EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRV 1398 (1495)
Q Consensus 1327 iIpQdp~LF~G-TIR~NLdp-~~------~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARA 1398 (1495)
+|+|++.||+. ||++||.+ .. +--++++.++++..++.+.+.+.|. .||||||||++||||
T Consensus 79 mVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~-----------~LSGGQrQRVAlaRA 147 (338)
T COG3839 79 MVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPL-----------QLSGGQRQRVALARA 147 (338)
T ss_pred EEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcc-----------cCChhhHHHHHHHHH
Confidence 99999999987 99999973 22 1236678999999999999988875 579999999999999
Q ss_pred HccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecCchhhh-ccCEEEEEeCcEEEEecChhHHhhcCCC
Q 000452 1399 LLKRRKILMLDEATASVDTATDNLIQQSLRQHFS--DCTVITIAHRITSVI-DSDMVLLLSHGLIEEYDSPRKLLENKSS 1475 (1495)
Q Consensus 1399 LLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~--~~TVI~IAHRl~ti~-~~DrIlVL~~G~ivE~gsp~~Ll~~~~s 1475 (1495)
|+++|++++||||.|+||++....+...|++..+ +.|+|.|||+....+ -+|||.||++|+|.+.|+|.|+.+++..
T Consensus 148 lVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~n 227 (338)
T COG3839 148 LVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPAN 227 (338)
T ss_pred HhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCccc
Confidence 9999999999999999999999888887777543 589999999987766 4999999999999999999999998877
Q ss_pred hHH
Q 000452 1476 SFS 1478 (1495)
Q Consensus 1476 ~f~ 1478 (1495)
.|-
T Consensus 228 ~fV 230 (338)
T COG3839 228 LFV 230 (338)
T ss_pred hhh
Confidence 663
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=383.46 Aligned_cols=215 Identities=28% Similarity=0.434 Sum_probs=191.7
Q ss_pred eEEEeeeeEEeCCC-CCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhccc
Q 000452 1247 KIDLRDLQVRYAPH-MPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRL 1325 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~-~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i 1325 (1495)
.|+++||+++|+.. .+++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48999999999743 34599999999999999999999999999999999999999999999999999988888899999
Q ss_pred EEEcccC--cCCCCcHHHhcCCCC---CCC----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHH
Q 000452 1326 SIIPQDP--VMFEGTVRSNVDPLE---EYT----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLG 1396 (1495)
Q Consensus 1326 siIpQdp--~LF~GTIR~NLdp~~---~~s----d~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LA 1396 (1495)
+|+||+| .++..||++||.... ..+ ++++.++++.+++.++....| .+||+|||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREP-----------ARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHHHHHH
Confidence 9999998 366779999997421 123 356788999999877655443 47999999999999
Q ss_pred HHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecCchhhhccCEEEEEeCcEEEEecChhHHhhc
Q 000452 1397 RVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFS--DCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLEN 1472 (1495)
Q Consensus 1397 RALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~--~~TVI~IAHRl~ti~~~DrIlVL~~G~ivE~gsp~~Ll~~ 1472 (1495)
|||+++|+||||||||++||+.+...+.+.|++..+ ++|||+|||+++.+..||+|++|++|++++.|+++++.++
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 999999999999999999999999999999998753 7999999999999988999999999999999999998754
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-40 Score=364.47 Aligned_cols=199 Identities=35% Similarity=0.551 Sum_probs=172.9
Q ss_pred cEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcC----------eEEEE
Q 000452 617 AIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG----------TKAYV 686 (1495)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g----------~~ayv 686 (1495)
.|+++|++++|+. . ++|+||||++++|++++|+||||||||||+|+|+|+++|.+|+|.+.| ++|||
T Consensus 4 ~i~v~nl~v~y~~--~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYV 80 (254)
T COG1121 4 MIEVENLTVSYGN--R-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYV 80 (254)
T ss_pred EEEEeeeEEEECC--E-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEc
Confidence 5899999999963 2 699999999999999999999999999999999999999999999876 48999
Q ss_pred ccCC---cccCccHHHHHhcCCCC-----------CHHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHH
Q 000452 687 AQSP---WIQSGKIEDNILFGKEM-----------DRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQ 752 (1495)
Q Consensus 687 ~Q~~---~l~~~ti~enI~fg~~~-----------~~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~ 752 (1495)
||.. |-|+.||+|-+.+|... |+++.+++++..++.+ +. .++..+|||||+|||-
T Consensus 81 PQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~-~~----------~r~i~~LSGGQ~QRV~ 149 (254)
T COG1121 81 PQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMED-LR----------DRQIGELSGGQKQRVL 149 (254)
T ss_pred CcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchh-hh----------CCcccccCcHHHHHHH
Confidence 9964 67889999999998432 3477788888888864 32 4677899999999999
Q ss_pred HHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHH-hCCCEEEEEecCCCcccc-CCEEEEEeCCEEEEecChHHHHh
Q 000452 753 IARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL-LNSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYTDVIN 830 (1495)
Q Consensus 753 LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~~~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 830 (1495)
|||||.++||+++|||||+|+|+.++..+++ ++..+ .+|+||++||||++.+.. +|+|+.|+ +++...|++++..+
T Consensus 150 lARAL~~~p~lllLDEP~~gvD~~~~~~i~~-lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~~~~~ 227 (254)
T COG1121 150 LARALAQNPDLLLLDEPFTGVDVAGQKEIYD-LLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEEVLT 227 (254)
T ss_pred HHHHhccCCCEEEecCCcccCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChhhccC
Confidence 9999999999999999999999999998886 45444 359999999999998764 99999995 57888899998875
Q ss_pred c
Q 000452 831 S 831 (1495)
Q Consensus 831 ~ 831 (1495)
.
T Consensus 228 ~ 228 (254)
T COG1121 228 E 228 (254)
T ss_pred H
Confidence 3
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=372.57 Aligned_cols=217 Identities=32% Similarity=0.511 Sum_probs=198.3
Q ss_pred CcceEEEeeeeEEeCCC-CCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHh
Q 000452 1244 SHGKIDLRDLQVRYAPH-MPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLR 1322 (1495)
Q Consensus 1244 ~~g~I~f~nv~~~Y~~~-~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR 1322 (1495)
..|.++++|++++|+.. ..++|+|+||+|++||++||+|++|||||||+++|+|+++|++|+|.+||.++...+....|
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 35789999999999753 24599999999999999999999999999999999999999999999999999888878888
Q ss_pred cccEEEcccCcCCCCcHHHhcCC-CCCCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHcc
Q 000452 1323 TRLSIIPQDPVMFEGTVRSNVDP-LEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLK 1401 (1495)
Q Consensus 1323 ~~isiIpQdp~LF~GTIR~NLdp-~~~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALLr 1401 (1495)
++++|+||+|.+|++|+++|++. ....+.+++++..++.++.+++..+|.|+++.+.+...+||+|||||++|||||++
T Consensus 88 ~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~ 167 (226)
T cd03248 88 SKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIR 167 (226)
T ss_pred hhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999984 33344556777777788889999998899988999999999999999999999999
Q ss_pred CCCeEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhccCEEEEEeCcEE
Q 000452 1402 RRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLI 1460 (1495)
Q Consensus 1402 ~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~i 1460 (1495)
+|++|||||||++||+++...+.+.|++..+++|+|+|+|+++.+..||+|++|++|++
T Consensus 168 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 168 NPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999998778999999999999989999999999975
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-40 Score=391.22 Aligned_cols=220 Identities=26% Similarity=0.415 Sum_probs=190.5
Q ss_pred EEEeeeeEEeCC--CCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHH---Hh
Q 000452 1248 IDLRDLQVRYAP--HMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHD---LR 1322 (1495)
Q Consensus 1248 I~f~nv~~~Y~~--~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~---LR 1322 (1495)
|+++|++++|+. +..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++..+ +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 789999999972 2346999999999999999999999999999999999999999999999999999887654 47
Q ss_pred cccEEEcccCcCCC-CcHHHhcCCC---CCCC----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHH
Q 000452 1323 TRLSIIPQDPVMFE-GTVRSNVDPL---EEYT----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVC 1394 (1495)
Q Consensus 1323 ~~isiIpQdp~LF~-GTIR~NLdp~---~~~s----d~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~ 1394 (1495)
++++|+||+|.+|. .|+++|+... ...+ ++++.++++..++.+...+. ..+||||||||++
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-----------~~~LSgGq~qRv~ 150 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRY-----------PAQLSGGQKQRVA 150 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCC-----------hhhCCHHHHHHHH
Confidence 89999999999986 6999999632 1222 24567788888886654433 3479999999999
Q ss_pred HHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecCchhhhc-cCEEEEEeCcEEEEecChhHHhh
Q 000452 1395 LGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLE 1471 (1495)
Q Consensus 1395 LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~Ll~ 1471 (1495)
|||||+++|+||+|||||++||+.+...+.+.|++..+ ++|||+|||+++.+.. ||+|++|++|++++.|++++++.
T Consensus 151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~ 230 (343)
T PRK11153 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFS 230 (343)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999998753 7899999999999876 99999999999999999999987
Q ss_pred cCCChHH
Q 000452 1472 NKSSSFS 1478 (1495)
Q Consensus 1472 ~~~s~f~ 1478 (1495)
++...+.
T Consensus 231 ~~~~~~~ 237 (343)
T PRK11153 231 HPKHPLT 237 (343)
T ss_pred CCCcHHH
Confidence 6544333
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=367.50 Aligned_cols=201 Identities=32% Similarity=0.463 Sum_probs=176.0
Q ss_pred cEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcC-------------eE
Q 000452 617 AIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG-------------TK 683 (1495)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g-------------~~ 683 (1495)
.++++|++|+|+ ++++|+|+||++++|++++|+|||||||||||++|+|.++|.+|+|.++| .+
T Consensus 2 ~L~~~~ls~~y~---~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 2 MLEVENLSFGYG---GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred eeEEEEEEEEEC---CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 478999999996 46899999999999999999999999999999999999999999999999 46
Q ss_pred EEEccCCcc-cCccHHHHHhcCCC-----------CCHHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHH
Q 000452 684 AYVAQSPWI-QSGKIEDNILFGKE-----------MDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRI 751 (1495)
Q Consensus 684 ayv~Q~~~l-~~~ti~enI~fg~~-----------~~~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv 751 (1495)
|||||++.. +.-||+|-+.+|+. -|++..+++++.+++++.. .+...+|||||||||
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la-----------~r~~~~LSGGerQrv 147 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLA-----------DRPVDELSGGERQRV 147 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHh-----------cCcccccChhHHHHH
Confidence 999999755 46699999999852 1344566778888887644 366789999999999
Q ss_pred HHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHH-hCCCEEEEEecCCCccc-cCCEEEEEeCCEEEEecChHHHH
Q 000452 752 QIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL-LNSKTVLYVTHQVEFLP-AADLVLVIKDGKITQAGKYTDVI 829 (1495)
Q Consensus 752 ~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~~~~tvIlvTH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~ 829 (1495)
.|||||+++|+|+|||||||+||....-++++.+.... .+|+|+|+|+||+++.. .||++++|++|+++..|+++|++
T Consensus 148 ~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 148 LIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred HHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 99999999999999999999999999999987554433 34899999999999864 59999999999999999999887
Q ss_pred hc
Q 000452 830 NS 831 (1495)
Q Consensus 830 ~~ 831 (1495)
..
T Consensus 228 T~ 229 (258)
T COG1120 228 TE 229 (258)
T ss_pred CH
Confidence 54
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-40 Score=370.66 Aligned_cols=210 Identities=24% Similarity=0.350 Sum_probs=183.5
Q ss_pred EEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccEE
Q 000452 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSI 1327 (1495)
Q Consensus 1248 I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~isi 1327 (1495)
|+++||+++|+.+..++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.... .++|++++|
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 79 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR-KAARQSLGY 79 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccch-HHHhhhEEE
Confidence 5789999999753245999999999999999999999999999999999999999999999999987643 667889999
Q ss_pred EcccCcCC-CCcHHHhcCCCC---CCC----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHH
Q 000452 1328 IPQDPVMF-EGTVRSNVDPLE---EYT----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVL 1399 (1495)
Q Consensus 1328 IpQdp~LF-~GTIR~NLdp~~---~~s----d~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAL 1399 (1495)
+||+|.+| ..|+++|+.... ..+ ++++.++++..++.+.... . ..+||+|||||++||||+
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~----~~~LS~G~~qrv~la~al 148 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANK-------R----ARTLSGGMKRKLSLAIAL 148 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhC-------h----hhhCCHHHHHHHHHHHHH
Confidence 99999998 579999986311 122 2457788888887654332 2 247999999999999999
Q ss_pred ccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-cCEEEEEeCcEEEEecChhHH
Q 000452 1400 LKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKL 1469 (1495)
Q Consensus 1400 Lr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~L 1469 (1495)
+++|++|||||||++||+.+.+.+.+.|++..+++|||+++|+++.+.. ||+|++|++|++++.|+++++
T Consensus 149 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 149 IGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred hcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999999999999988777999999999999875 999999999999999998875
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-40 Score=383.06 Aligned_cols=215 Identities=28% Similarity=0.467 Sum_probs=186.8
Q ss_pred eEEEeeeeEEeCCCC---CcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCC--HHHH
Q 000452 1247 KIDLRDLQVRYAPHM---PFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIG--LHDL 1321 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~~---~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~--l~~L 1321 (1495)
.|+++||+++|+... .++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+++..+ ...+
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 388999999997532 36999999999999999999999999999999999999999999999999998753 4678
Q ss_pred hcccEEEcccC--cCCCCcHHHhcCCCC---CCCH----HHHHHHHHHcCCc--HHHHhccCCcccccccCCCCCCchHH
Q 000452 1322 RTRLSIIPQDP--VMFEGTVRSNVDPLE---EYTD----EQIWEALDKCQLG--DEVRKKEGKLDSKVTENGENWSMGQR 1390 (1495)
Q Consensus 1322 R~~isiIpQdp--~LF~GTIR~NLdp~~---~~sd----~ei~~aL~~~~L~--~~v~~lp~gLdt~v~e~G~nLS~GQr 1390 (1495)
|++++|+||+| .+|+.|+++|+.... ..++ +++.++++.++|. +. .......||||||
T Consensus 82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~~~LSgGq~ 150 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDY-----------KDKSPFELSGGQK 150 (287)
T ss_pred hhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhh-----------ccCCcccCCHHHH
Confidence 99999999998 578999999996321 2333 3467888888885 22 2233467999999
Q ss_pred HHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecCchhhh-ccCEEEEEeCcEEEEecChh
Q 000452 1391 QLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFS--DCTVITIAHRITSVI-DSDMVLLLSHGLIEEYDSPR 1467 (1495)
Q Consensus 1391 Qrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~--~~TVI~IAHRl~ti~-~~DrIlVL~~G~ivE~gsp~ 1467 (1495)
||++|||||+.+|+||||||||++||+.+...+.+.|++..+ +.|||+|||+++.+. .||||++|++|++++.|+++
T Consensus 151 qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~ 230 (287)
T PRK13637 151 RRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPR 230 (287)
T ss_pred HHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999998753 789999999999885 59999999999999999999
Q ss_pred HHhhc
Q 000452 1468 KLLEN 1472 (1495)
Q Consensus 1468 ~Ll~~ 1472 (1495)
+++++
T Consensus 231 ~~~~~ 235 (287)
T PRK13637 231 EVFKE 235 (287)
T ss_pred HHHhC
Confidence 98753
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-40 Score=364.08 Aligned_cols=199 Identities=25% Similarity=0.428 Sum_probs=183.5
Q ss_pred EEEeeeeEEeCCCC---CcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcc
Q 000452 1248 IDLRDLQVRYAPHM---PFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTR 1324 (1495)
Q Consensus 1248 I~f~nv~~~Y~~~~---~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~ 1324 (1495)
|+++||+++|++.. +++|+|+||+|++||+++|+|++|||||||+++|+|+++|++|+|.+|| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 57999999997642 4699999999999999999999999999999999999999999999999 6
Q ss_pred cEEEcccCcCCCCcHHHhcCCCCCCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCC
Q 000452 1325 LSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRK 1404 (1495)
Q Consensus 1325 isiIpQdp~LF~GTIR~NLdp~~~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALLr~~~ 1404 (1495)
++|+||+|.+|++|+++|+.....+++++.+++++.+++.+++..+|.|+++.+.+.+.+||+|||||++||||++++|+
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~ 147 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDAD 147 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999998765667778899999999999999999999999999999999999999999999999999
Q ss_pred eEEEEcCCCCCCHHHHHHHHH-HHHHhc-CCcEEEEEecCchhhhccCEEEEEeCcE
Q 000452 1405 ILMLDEATASVDTATDNLIQQ-SLRQHF-SDCTVITIAHRITSVIDSDMVLLLSHGL 1459 (1495)
Q Consensus 1405 ILiLDEaTsslD~~Td~~Iq~-~Ir~~f-~~~TVI~IAHRl~ti~~~DrIlVL~~G~ 1459 (1495)
+++|||||++||.++...+.+ .+++.. ++.|||+++|+++.+..||+|++|++|+
T Consensus 148 llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 148 IYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 999999999999999877766 566554 3689999999999999999999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=375.45 Aligned_cols=221 Identities=29% Similarity=0.466 Sum_probs=192.5
Q ss_pred cceEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccc-----CCccEEEEcCEeCCC--CC
Q 000452 1245 HGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVE-----PAAGQILIDGIDISL--IG 1317 (1495)
Q Consensus 1245 ~g~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~e-----p~~G~I~IDG~dI~~--i~ 1317 (1495)
.+.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+
T Consensus 11 ~~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~ 88 (260)
T PRK10744 11 PSKIQVRNLNFYYGK--FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88 (260)
T ss_pred CceEEEEEEEEEeCC--eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccc
Confidence 467999999999964 359999999999999999999999999999999999986 589999999999863 45
Q ss_pred HHHHhcccEEEcccCcCCCCcHHHhcCCC----CCCC----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchH
Q 000452 1318 LHDLRTRLSIIPQDPVMFEGTVRSNVDPL----EEYT----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQ 1389 (1495)
Q Consensus 1318 l~~LR~~isiIpQdp~LF~GTIR~NLdp~----~~~s----d~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQ 1389 (1495)
...+|++++|+||+|.+|..|+++|+... ...+ +++++++++.+++.+.+.. ...+...+||+||
T Consensus 89 ~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~Gq 161 (260)
T PRK10744 89 IALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKD-------KLHQSGYSLSGGQ 161 (260)
T ss_pred hHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH-------HHhcCCCCCCHHH
Confidence 66789999999999999999999999632 1222 3567888999888654432 2334567899999
Q ss_pred HHHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-cCEEEEEeCcEEEEecChhH
Q 000452 1390 RQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRK 1468 (1495)
Q Consensus 1390 rQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~ 1468 (1495)
|||++|||||+++|+||||||||++||..+...+.+.|++..++.|||+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 162 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 241 (260)
T PRK10744 162 QQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDT 241 (260)
T ss_pred HHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999988777899999999998864 99999999999999999999
Q ss_pred HhhcCC
Q 000452 1469 LLENKS 1474 (1495)
Q Consensus 1469 Ll~~~~ 1474 (1495)
+++.+.
T Consensus 242 ~~~~~~ 247 (260)
T PRK10744 242 IFTKPA 247 (260)
T ss_pred HHhCCC
Confidence 986543
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-40 Score=389.77 Aligned_cols=217 Identities=22% Similarity=0.378 Sum_probs=191.6
Q ss_pred eEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccE
Q 000452 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLS 1326 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~is 1326 (1495)
.|+++|++++|+.+ ..+|+|+||+|++||.+||+|+||||||||+++|.|+.+|++|+|.+||.++.+++.+ +++++
T Consensus 3 ~l~i~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig 79 (356)
T PRK11650 3 GLKLQAVRKSYDGK-TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDIA 79 (356)
T ss_pred EEEEEeEEEEeCCC-CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 48999999999433 3599999999999999999999999999999999999999999999999999987765 47899
Q ss_pred EEcccCcCCCC-cHHHhcCCC-C--CCC----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHH
Q 000452 1327 IIPQDPVMFEG-TVRSNVDPL-E--EYT----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRV 1398 (1495)
Q Consensus 1327 iIpQdp~LF~G-TIR~NLdp~-~--~~s----d~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARA 1398 (1495)
||||++.+|.. |+++|+... . ..+ ++++.++++.+++.++..+.| .+||||||||++||||
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRvalARA 148 (356)
T PRK11650 80 MVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKP-----------RELSGGQRQRVAMGRA 148 (356)
T ss_pred EEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCCh-----------hhCCHHHHHHHHHHHH
Confidence 99999999965 999999732 1 223 245778899999987766655 3689999999999999
Q ss_pred HccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecCchhhh-ccCEEEEEeCcEEEEecChhHHhhcCCC
Q 000452 1399 LLKRRKILMLDEATASVDTATDNLIQQSLRQHFS--DCTVITIAHRITSVI-DSDMVLLLSHGLIEEYDSPRKLLENKSS 1475 (1495)
Q Consensus 1399 LLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~--~~TVI~IAHRl~ti~-~~DrIlVL~~G~ivE~gsp~~Ll~~~~s 1475 (1495)
|+++|+||+||||||+||..+...+.+.|++..+ +.|+|+|||+++.+. .||+|++|++|++++.|+|+++++++..
T Consensus 149 L~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p~~ 228 (356)
T PRK11650 149 IVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKPAS 228 (356)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCCcc
Confidence 9999999999999999999999999999988654 689999999999776 5999999999999999999999987765
Q ss_pred hH
Q 000452 1476 SF 1477 (1495)
Q Consensus 1476 ~f 1477 (1495)
.|
T Consensus 229 ~~ 230 (356)
T PRK11650 229 TF 230 (356)
T ss_pred HH
Confidence 44
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-40 Score=374.41 Aligned_cols=219 Identities=26% Similarity=0.441 Sum_probs=190.4
Q ss_pred eEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccc-----CCccEEEEcCEeCCC--CCHH
Q 000452 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVE-----PAAGQILIDGIDISL--IGLH 1319 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~e-----p~~G~I~IDG~dI~~--i~l~ 1319 (1495)
.|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+..
T Consensus 6 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (253)
T PRK14242 6 KMEARGLSFFYGD--FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVV 83 (253)
T ss_pred EEEEeeeEEEECC--eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHH
Confidence 5999999999964 359999999999999999999999999999999999975 589999999999875 3456
Q ss_pred HHhcccEEEcccCcCCCCcHHHhcCCC----CC----CCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHH
Q 000452 1320 DLRTRLSIIPQDPVMFEGTVRSNVDPL----EE----YTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQ 1391 (1495)
Q Consensus 1320 ~LR~~isiIpQdp~LF~GTIR~NLdp~----~~----~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQ 1391 (1495)
.+|++++|+||+|.+|.+|+++|+... +. ..++++.++++.+++.+.+.. .......+|||||||
T Consensus 84 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq~q 156 (253)
T PRK14242 84 ELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKD-------RLHESALGLSGGQQQ 156 (253)
T ss_pred HHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhH-------HhhCCcccCCHHHHH
Confidence 788999999999999999999999631 11 124567888999988765432 223445689999999
Q ss_pred HHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-cCEEEEEeCcEEEEecChhHHh
Q 000452 1392 LVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLL 1470 (1495)
Q Consensus 1392 rl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~Ll 1470 (1495)
|++|||||+++|+||+|||||++||+.+...+.+.|++..+++|||+++|+++.+.. ||+|++|++|++++.|+++++.
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14242 157 RLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIF 236 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987667899999999999865 9999999999999999999998
Q ss_pred hcCC
Q 000452 1471 ENKS 1474 (1495)
Q Consensus 1471 ~~~~ 1474 (1495)
+++.
T Consensus 237 ~~~~ 240 (253)
T PRK14242 237 TRPR 240 (253)
T ss_pred cCCC
Confidence 6543
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-40 Score=379.45 Aligned_cols=215 Identities=27% Similarity=0.419 Sum_probs=192.5
Q ss_pred eEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccE
Q 000452 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLS 1326 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~is 1326 (1495)
.++++||+++|+...+++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|++++
T Consensus 5 ~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 84 (279)
T PRK13635 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVG 84 (279)
T ss_pred eEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheE
Confidence 48999999999754456999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEcccC--cCCCCcHHHhcCCCC---CCC----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHH
Q 000452 1327 IIPQDP--VMFEGTVRSNVDPLE---EYT----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGR 1397 (1495)
Q Consensus 1327 iIpQdp--~LF~GTIR~NLdp~~---~~s----d~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LAR 1397 (1495)
|+||+| .+++.|+++||.... ..+ ++++.++++.++|.+.+...| ..||+|||||++|||
T Consensus 85 ~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qrv~lar 153 (279)
T PRK13635 85 MVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREP-----------HRLSGGQKQRVAIAG 153 (279)
T ss_pred EEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHHHH
Confidence 999998 567789999996421 123 245788889999887766655 368999999999999
Q ss_pred HHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecCchhhhccCEEEEEeCcEEEEecChhHHhhc
Q 000452 1398 VLLKRRKILMLDEATASVDTATDNLIQQSLRQHFS--DCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLEN 1472 (1495)
Q Consensus 1398 ALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~--~~TVI~IAHRl~ti~~~DrIlVL~~G~ivE~gsp~~Ll~~ 1472 (1495)
||+.+|+||||||||++||+.+...+.+.|++..+ ++|||+|+|+++.+..||+|++|++|++++.|+++++.+.
T Consensus 154 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13635 154 VLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKS 230 (279)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999999999999999998764 7899999999999989999999999999999999988753
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-40 Score=339.33 Aligned_cols=207 Identities=27% Similarity=0.388 Sum_probs=187.7
Q ss_pred EEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHH---Hhcc
Q 000452 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHD---LRTR 1324 (1495)
Q Consensus 1248 I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~---LR~~ 1324 (1495)
|+|+||+.+|+.+ +++|+||||+|++||.+=++|+||||||||+++|++...|++|+|.++|.|++++.-++ ||++
T Consensus 2 I~f~~V~k~Y~~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 2 IRFENVSKAYPGG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred eeehhhhhhcCCC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence 8999999999877 77999999999999999999999999999999999999999999999999999988655 8999
Q ss_pred cEEEcccCcCCCC-cHHHhcC-CCC--CCC----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHH
Q 000452 1325 LSIIPQDPVMFEG-TVRSNVD-PLE--EYT----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLG 1396 (1495)
Q Consensus 1325 isiIpQdp~LF~G-TIR~NLd-p~~--~~s----d~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LA 1396 (1495)
||+|.||--|... |+.||+. |.. ..+ .+++.++|+.+||.+....+|. .|||||+||+|||
T Consensus 81 IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~-----------~LSGGEQQRvaIA 149 (223)
T COG2884 81 IGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPS-----------QLSGGEQQRVAIA 149 (223)
T ss_pred eeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCcc-----------ccCchHHHHHHHH
Confidence 9999999987755 9999996 432 222 3467899999999999998885 5799999999999
Q ss_pred HHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-cCEEEEEeCcEEEEecCh
Q 000452 1397 RVLLKRRKILMLDEATASVDTATDNLIQQSLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSP 1466 (1495)
Q Consensus 1397 RALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp 1466 (1495)
||+..+|++|+-||||-|||+++...|.+.+.+.- .|.||++.||+.+.+.+ --|++.+++|+++..+++
T Consensus 150 RAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~~ 221 (223)
T COG2884 150 RAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDESR 221 (223)
T ss_pred HHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecccc
Confidence 99999999999999999999999999999988764 58999999999999987 468999999999987765
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=374.05 Aligned_cols=222 Identities=26% Similarity=0.399 Sum_probs=191.7
Q ss_pred eEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccC-----CccEEEEcCEeCCC--CCHH
Q 000452 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEP-----AAGQILIDGIDISL--IGLH 1319 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep-----~~G~I~IDG~dI~~--i~l~ 1319 (1495)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. ....
T Consensus 7 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (254)
T PRK14273 7 IIETENLNLFYTD--FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDIL 84 (254)
T ss_pred eEEEeeeEEEeCC--ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHH
Confidence 6999999999964 3599999999999999999999999999999999999997 48999999999864 3456
Q ss_pred HHhcccEEEcccCcCCCCcHHHhcCCCC----CC----CHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHH
Q 000452 1320 DLRTRLSIIPQDPVMFEGTVRSNVDPLE----EY----TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQ 1391 (1495)
Q Consensus 1320 ~LR~~isiIpQdp~LF~GTIR~NLdp~~----~~----sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQ 1391 (1495)
.+|++++|+||+|.+|..|+++|+.... .. .++++.++++.+++.+.+. +.+|+ ...+|||||||
T Consensus 85 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~---~~~~~----~~~~LSgG~~q 157 (254)
T PRK14273 85 ELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVK---DKLNT----NALSLSGGQQQ 157 (254)
T ss_pred HHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhH---HHHhC----CcccCCHHHHH
Confidence 6889999999999999999999996321 11 2456778888888865442 23444 45689999999
Q ss_pred HHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-cCEEEEEeCcEEEEecChhHHh
Q 000452 1392 LVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLL 1470 (1495)
Q Consensus 1392 rl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~Ll 1470 (1495)
|++|||||+++|++|||||||++||..+...+.+.|++..+++|||+|+|+++.+.. ||||++|++|++++.|+++++.
T Consensus 158 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 158 RLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELF 237 (254)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999998777999999999999865 9999999999999999999998
Q ss_pred hcCCChH
Q 000452 1471 ENKSSSF 1477 (1495)
Q Consensus 1471 ~~~~s~f 1477 (1495)
+++.-.|
T Consensus 238 ~~~~~~~ 244 (254)
T PRK14273 238 FNPKNTK 244 (254)
T ss_pred hCCCChH
Confidence 7654333
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=370.68 Aligned_cols=212 Identities=25% Similarity=0.396 Sum_probs=183.7
Q ss_pred eEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccE
Q 000452 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLS 1326 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~is 1326 (1495)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .|++++
T Consensus 2 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 77 (239)
T cd03296 2 SIEVRNVSKRFGD--FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVG 77 (239)
T ss_pred EEEEEeEEEEECC--EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceE
Confidence 3789999999964 459999999999999999999999999999999999999999999999999876653 367899
Q ss_pred EEcccCcCCC-CcHHHhcCCCC---CC----C----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHH
Q 000452 1327 IIPQDPVMFE-GTVRSNVDPLE---EY----T----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVC 1394 (1495)
Q Consensus 1327 iIpQdp~LF~-GTIR~NLdp~~---~~----s----d~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~ 1394 (1495)
|+||+|.+|. .|+++|+.... .. + ++++.++++.+++.+...+. ..+||+|||||++
T Consensus 78 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrl~ 146 (239)
T cd03296 78 FVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRY-----------PAQLSGGQRQRVA 146 (239)
T ss_pred EEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcC-----------hhhCCHHHHHHHH
Confidence 9999999986 59999997421 11 1 23466778888876554433 3479999999999
Q ss_pred HHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecCchhhhc-cCEEEEEeCcEEEEecChhHHhh
Q 000452 1395 LGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLE 1471 (1495)
Q Consensus 1395 LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~Ll~ 1471 (1495)
|||||+++|++|||||||++||+++...+.+.|++..+ ++|||+++|+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 147 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (239)
T cd03296 147 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYD 226 (239)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhc
Confidence 99999999999999999999999999999999998653 7899999999998765 99999999999999999999986
Q ss_pred cC
Q 000452 1472 NK 1473 (1495)
Q Consensus 1472 ~~ 1473 (1495)
++
T Consensus 227 ~~ 228 (239)
T cd03296 227 HP 228 (239)
T ss_pred CC
Confidence 54
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=372.19 Aligned_cols=221 Identities=27% Similarity=0.464 Sum_probs=190.9
Q ss_pred EEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCC-----ccEEEEcCEeCCCC--CHHH
Q 000452 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPA-----AGQILIDGIDISLI--GLHD 1320 (1495)
Q Consensus 1248 I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~-----~G~I~IDG~dI~~i--~l~~ 1320 (1495)
|+++||+++|+.. .+|+|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.++... +...
T Consensus 2 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~ 79 (247)
T TIGR00972 2 IEIENLNLFYGEK--EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVE 79 (247)
T ss_pred EEEEEEEEEECCe--eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHH
Confidence 7899999999743 4999999999999999999999999999999999999998 99999999999763 4566
Q ss_pred HhcccEEEcccCcCCCCcHHHhcCCC---CC-CC----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHH
Q 000452 1321 LRTRLSIIPQDPVMFEGTVRSNVDPL---EE-YT----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQL 1392 (1495)
Q Consensus 1321 LR~~isiIpQdp~LF~GTIR~NLdp~---~~-~s----d~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQr 1392 (1495)
.|++++|+||+|.+|..|+++|+... .. .+ ++++.++++..++.+.+.. .......+||||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgG~~qr 152 (247)
T TIGR00972 80 LRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKD-------RLHDSALGLSGGQQQR 152 (247)
T ss_pred HHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhh-------HhhCCcccCCHHHHHH
Confidence 78999999999999999999999631 11 12 3467888999998744421 1223446899999999
Q ss_pred HHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-cCEEEEEeCcEEEEecChhHHhh
Q 000452 1393 VCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLE 1471 (1495)
Q Consensus 1393 l~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~Ll~ 1471 (1495)
++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|+|+|+++.+.. ||+|++|++|++++.|+++++++
T Consensus 153 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 232 (247)
T TIGR00972 153 LCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFT 232 (247)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999987767999999999998865 99999999999999999999987
Q ss_pred cCCChH
Q 000452 1472 NKSSSF 1477 (1495)
Q Consensus 1472 ~~~s~f 1477 (1495)
++...+
T Consensus 233 ~~~~~~ 238 (247)
T TIGR00972 233 NPKEKR 238 (247)
T ss_pred CCCChH
Confidence 654443
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-40 Score=387.61 Aligned_cols=217 Identities=24% Similarity=0.415 Sum_probs=192.0
Q ss_pred ceEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhccc
Q 000452 1246 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRL 1325 (1495)
Q Consensus 1246 g~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i 1325 (1495)
..|+++|++++|.. ..+|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.++...+.+ |+++
T Consensus 5 ~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 80 (351)
T PRK11432 5 NFVVLKNITKRFGS--NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ--QRDI 80 (351)
T ss_pred cEEEEEeEEEEECC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 36999999999964 4599999999999999999999999999999999999999999999999999887654 6789
Q ss_pred EEEcccCcCCCC-cHHHhcCCC-C--CCC----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHH
Q 000452 1326 SIIPQDPVMFEG-TVRSNVDPL-E--EYT----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGR 1397 (1495)
Q Consensus 1326 siIpQdp~LF~G-TIR~NLdp~-~--~~s----d~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LAR 1397 (1495)
+|++|++.+|.. |+++|+... . ..+ ++++.++++..++.++..+.| ..||||||||++|||
T Consensus 81 g~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~-----------~~LSgGq~QRVaLAR 149 (351)
T PRK11432 81 CMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYV-----------DQISGGQQQRVALAR 149 (351)
T ss_pred EEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHH
Confidence 999999999976 999999732 1 122 456788899999876654443 468999999999999
Q ss_pred HHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecCchhhhc-cCEEEEEeCcEEEEecChhHHhhcCC
Q 000452 1398 VLLKRRKILMLDEATASVDTATDNLIQQSLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLENKS 1474 (1495)
Q Consensus 1398 ALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~Ll~~~~ 1474 (1495)
||+++|+||+||||||+||..+...+.+.|++..+ ++|+|+|||+++.+.. ||+|+||++|+|++.|+|+++.+++.
T Consensus 150 aL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p~ 229 (351)
T PRK11432 150 ALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPA 229 (351)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 99999999999999999999999999999998754 7899999999998855 99999999999999999999998876
Q ss_pred ChH
Q 000452 1475 SSF 1477 (1495)
Q Consensus 1475 s~f 1477 (1495)
..|
T Consensus 230 ~~~ 232 (351)
T PRK11432 230 SRF 232 (351)
T ss_pred chH
Confidence 544
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-40 Score=378.97 Aligned_cols=212 Identities=27% Similarity=0.381 Sum_probs=188.7
Q ss_pred eEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccE
Q 000452 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLS 1326 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~is 1326 (1495)
.|+++|++++|+.+ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|++++
T Consensus 4 ~l~~~~l~~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 82 (274)
T PRK13647 4 IIEVEDLHFRYKDG-TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVG 82 (274)
T ss_pred eEEEEEEEEEeCCC-CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEE
Confidence 48999999999643 45999999999999999999999999999999999999999999999999999888888999999
Q ss_pred EEcccC--cCCCCcHHHhcCCCC---CCC----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHH
Q 000452 1327 IIPQDP--VMFEGTVRSNVDPLE---EYT----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGR 1397 (1495)
Q Consensus 1327 iIpQdp--~LF~GTIR~NLdp~~---~~s----d~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LAR 1397 (1495)
|+||+| .+|..|+++|+.... ..+ ++++.++++.+++.+...+.| ..||||||||++|||
T Consensus 83 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgG~~qrv~lar 151 (274)
T PRK13647 83 LVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPP-----------YHLSYGQKKRVAIAG 151 (274)
T ss_pred EEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCh-----------hhCCHHHHHHHHHHH
Confidence 999999 688899999997321 122 346788899999976655544 368999999999999
Q ss_pred HHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhh-ccCEEEEEeCcEEEEecChhHHh
Q 000452 1398 VLLKRRKILMLDEATASVDTATDNLIQQSLRQHF-SDCTVITIAHRITSVI-DSDMVLLLSHGLIEEYDSPRKLL 1470 (1495)
Q Consensus 1398 ALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f-~~~TVI~IAHRl~ti~-~~DrIlVL~~G~ivE~gsp~~Ll 1470 (1495)
||+++|++|||||||++||+.+...+.+.|++.. .++|||+|+|+++.+. .||||++|++|++++.|+++++.
T Consensus 152 aL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 226 (274)
T PRK13647 152 VLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLT 226 (274)
T ss_pred HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHhc
Confidence 9999999999999999999999999999998874 3789999999999985 59999999999999999997653
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-40 Score=373.02 Aligned_cols=211 Identities=29% Similarity=0.420 Sum_probs=184.2
Q ss_pred EEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCC---HHHHhcc
Q 000452 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIG---LHDLRTR 1324 (1495)
Q Consensus 1248 I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~---l~~LR~~ 1324 (1495)
++++||+++|+.+ ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ...+|++
T Consensus 1 l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (241)
T cd03256 1 IEVENLSKTYPNG-KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQ 79 (241)
T ss_pred CEEeeEEEecCCc-cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhc
Confidence 4789999999642 45999999999999999999999999999999999999999999999999998876 5668899
Q ss_pred cEEEcccCcCCC-CcHHHhcCCC------------C---CCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCch
Q 000452 1325 LSIIPQDPVMFE-GTVRSNVDPL------------E---EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMG 1388 (1495)
Q Consensus 1325 isiIpQdp~LF~-GTIR~NLdp~------------~---~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~G 1388 (1495)
++|+||++.+|. .|+++|+... + ...++++.++++..++.+... ..+.+||+|
T Consensus 80 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G 148 (241)
T cd03256 80 IGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAY-----------QRADQLSGG 148 (241)
T ss_pred cEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhC-----------CCcccCCHH
Confidence 999999998887 6999999521 1 112345677788887754332 244679999
Q ss_pred HHHHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCchhhh-ccCEEEEEeCcEEEEecC
Q 000452 1389 QRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHF--SDCTVITIAHRITSVI-DSDMVLLLSHGLIEEYDS 1465 (1495)
Q Consensus 1389 QrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f--~~~TVI~IAHRl~ti~-~~DrIlVL~~G~ivE~gs 1465 (1495)
||||++|||||+++|+||||||||++||+.+...+.+.|++.. .++|||+|+|+++.+. .||+|++|++|++++.|+
T Consensus 149 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~ 228 (241)
T cd03256 149 QQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGP 228 (241)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecC
Confidence 9999999999999999999999999999999999999999875 3799999999999998 599999999999999999
Q ss_pred hhHHh
Q 000452 1466 PRKLL 1470 (1495)
Q Consensus 1466 p~~Ll 1470 (1495)
++++.
T Consensus 229 ~~~~~ 233 (241)
T cd03256 229 PAELT 233 (241)
T ss_pred HHHhh
Confidence 99874
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=354.62 Aligned_cols=204 Identities=30% Similarity=0.427 Sum_probs=177.6
Q ss_pred EEEeeeeEEeCCCC--CcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHH---H-
Q 000452 1248 IDLRDLQVRYAPHM--PFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHD---L- 1321 (1495)
Q Consensus 1248 I~f~nv~~~Y~~~~--~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~---L- 1321 (1495)
++++||+..|..+. ..+|+|+||+|++||.|+|+||||||||||+++|-++..|++|+|.++|.|+..++-++ +
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 67899999997543 36999999999999999999999999999999999999999999999999999998543 3
Q ss_pred hcccEEEcccCcCCCC-cHHHhcC-C--CCCC----CHHHHHHHHHHcCCcHHHH-hccCCcccccccCCCCCCchHHHH
Q 000452 1322 RTRLSIIPQDPVMFEG-TVRSNVD-P--LEEY----TDEQIWEALDKCQLGDEVR-KKEGKLDSKVTENGENWSMGQRQL 1392 (1495)
Q Consensus 1322 R~~isiIpQdp~LF~G-TIR~NLd-p--~~~~----sd~ei~~aL~~~~L~~~v~-~lp~gLdt~v~e~G~nLS~GQrQr 1392 (1495)
|++||+|+|+..|++. |++||+. | +... .++.+.+.++..++.+... +.| ..||||||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p-----------~eLSGGqqQR 150 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKP-----------SELSGGQQQR 150 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCc-----------hhcCHHHHHH
Confidence 5679999999998876 9999986 2 2222 2455677778888876655 334 4689999999
Q ss_pred HHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCchhhhccCEEEEEeCcEEEE
Q 000452 1393 VCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHF--SDCTVITIAHRITSVIDSDMVLLLSHGLIEE 1462 (1495)
Q Consensus 1393 l~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f--~~~TVI~IAHRl~ti~~~DrIlVL~~G~ivE 1462 (1495)
++|||||+.+|+|++.||||+|||.+|.+.|.+.+++.- .++|+|+|||+......|||++.|.+|++.+
T Consensus 151 VAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~~ 222 (226)
T COG1136 151 VAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222 (226)
T ss_pred HHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeeee
Confidence 999999999999999999999999999999999999875 3789999999999999999999999999543
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-40 Score=371.56 Aligned_cols=212 Identities=26% Similarity=0.417 Sum_probs=182.8
Q ss_pred EEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHH-hcccE
Q 000452 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDL-RTRLS 1326 (1495)
Q Consensus 1248 I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~L-R~~is 1326 (1495)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.... |.+++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (236)
T cd03219 1 LEVRGLTKRFGG--LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIG 78 (236)
T ss_pred CeeeeeEEEECC--EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEE
Confidence 478999999964 359999999999999999999999999999999999999999999999999998876654 67899
Q ss_pred EEcccCcCCCC-cHHHhcCCCC----CC-------------CHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCch
Q 000452 1327 IIPQDPVMFEG-TVRSNVDPLE----EY-------------TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMG 1388 (1495)
Q Consensus 1327 iIpQdp~LF~G-TIR~NLdp~~----~~-------------sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~G 1388 (1495)
|+||+|.+|.+ |+++|+.... .. .++++.++++..++.+.. ......||||
T Consensus 79 ~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG 147 (236)
T cd03219 79 RTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLA-----------DRPAGELSYG 147 (236)
T ss_pred EEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchh-----------hCChhhCCHH
Confidence 99999999987 9999985321 10 122455666666654332 3344579999
Q ss_pred HHHHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-cCEEEEEeCcEEEEecCh
Q 000452 1389 QRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSP 1466 (1495)
Q Consensus 1389 QrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp 1466 (1495)
||||++|||||+++|++|||||||++||+.+...+.+.|++.. .++|+|+|+|+++.+.. ||+|++|++|++++.|++
T Consensus 148 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~ 227 (236)
T cd03219 148 QQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTP 227 (236)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCH
Confidence 9999999999999999999999999999999999999998865 57899999999999866 999999999999999999
Q ss_pred hHHhhc
Q 000452 1467 RKLLEN 1472 (1495)
Q Consensus 1467 ~~Ll~~ 1472 (1495)
++++++
T Consensus 228 ~~~~~~ 233 (236)
T cd03219 228 DEVRNN 233 (236)
T ss_pred HHhccC
Confidence 998754
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-40 Score=367.60 Aligned_cols=202 Identities=24% Similarity=0.350 Sum_probs=177.0
Q ss_pred EEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHH---HHhcc
Q 000452 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLH---DLRTR 1324 (1495)
Q Consensus 1248 I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~---~LR~~ 1324 (1495)
|+++|++++|+.+..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+.. .+|++
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRH 81 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHh
Confidence 789999999965434699999999999999999999999999999999999999999999999999876543 47889
Q ss_pred cEEEcccCcCCC-CcHHHhcCCC----C---CCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHH
Q 000452 1325 LSIIPQDPVMFE-GTVRSNVDPL----E---EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLG 1396 (1495)
Q Consensus 1325 isiIpQdp~LF~-GTIR~NLdp~----~---~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LA 1396 (1495)
++|+||+|.+|. .|+++|+... + +..++++.++++.+++.+.....| .+||||||||++||
T Consensus 82 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~la 150 (216)
T TIGR00960 82 IGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALP-----------MQLSGGEQQRVAIA 150 (216)
T ss_pred ceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHHH
Confidence 999999999887 4999999631 1 113456888999999876655443 36999999999999
Q ss_pred HHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-cCEEEEEeCcEE
Q 000452 1397 RVLLKRRKILMLDEATASVDTATDNLIQQSLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGLI 1460 (1495)
Q Consensus 1397 RALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~i 1460 (1495)
|||+++|+||+|||||++||+++...+.+.|++.. .++|||+|||+++.+.. ||+|++|++|++
T Consensus 151 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 151 RAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999998864 37899999999999875 899999999975
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=373.50 Aligned_cols=222 Identities=24% Similarity=0.493 Sum_probs=191.1
Q ss_pred CCcceEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccc-----CCccEEEEcCEeCCC--
Q 000452 1243 PSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVE-----PAAGQILIDGIDISL-- 1315 (1495)
Q Consensus 1243 p~~g~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~e-----p~~G~I~IDG~dI~~-- 1315 (1495)
|....|+++||+++|+. ..+|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||.++..
T Consensus 9 ~~~~~l~i~nl~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~ 86 (269)
T PRK14259 9 SKNIIISLQNVTISYGT--FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPR 86 (269)
T ss_pred CCCceEEEEeEEEEECC--EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 34457999999999964 359999999999999999999999999999999999987 689999999999863
Q ss_pred CCHHHHhcccEEEcccCcCCCCcHHHhcCCCC---CC---CHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchH
Q 000452 1316 IGLHDLRTRLSIIPQDPVMFEGTVRSNVDPLE---EY---TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQ 1389 (1495)
Q Consensus 1316 i~l~~LR~~isiIpQdp~LF~GTIR~NLdp~~---~~---sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQ 1389 (1495)
.+..++|++++|+||+|.+|.+|+++|+.... .+ .++++.++++.+++.+.+. ........+||+||
T Consensus 87 ~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~ 159 (269)
T PRK14259 87 VDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECK-------DKLNESGYSLSGGQ 159 (269)
T ss_pred CCHHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhh-------hhhCCCcccCCHHH
Confidence 56678899999999999999999999997432 11 2456777888888754332 22334456899999
Q ss_pred HHHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-cCEEEEEeC-----------
Q 000452 1390 RQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVID-SDMVLLLSH----------- 1457 (1495)
Q Consensus 1390 rQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~~-~DrIlVL~~----------- 1457 (1495)
|||++|||||+++|+||||||||++||+.+...+.+.|++..+++|||+|||+++.+.+ ||+|++|++
T Consensus 160 ~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~ 239 (269)
T PRK14259 160 QQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKV 239 (269)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEecccccccccccc
Confidence 99999999999999999999999999999999999999988777999999999998865 999999996
Q ss_pred cEEEEecChhHHhhcC
Q 000452 1458 GLIEEYDSPRKLLENK 1473 (1495)
Q Consensus 1458 G~ivE~gsp~~Ll~~~ 1473 (1495)
|+++|.|+++++++++
T Consensus 240 g~~~~~~~~~~~~~~~ 255 (269)
T PRK14259 240 GYLVEFNETKKIFNSP 255 (269)
T ss_pred ceEEEeCCHHHHHhCc
Confidence 6799999999998754
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-40 Score=348.95 Aligned_cols=212 Identities=26% Similarity=0.411 Sum_probs=190.1
Q ss_pred eEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCC---HHHHhc
Q 000452 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIG---LHDLRT 1323 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~---l~~LR~ 1323 (1495)
.|+++||+.+|+. ...+|+||||+|++||.|+|+|+||||||||+++|.|+.+|++|+|.++|.++.... ++++|+
T Consensus 3 ~i~~~nl~k~yp~-~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 3 MIEVKNLSKTYPG-GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR 81 (258)
T ss_pred eEEEeeeeeecCC-CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence 5899999999974 456999999999999999999999999999999999999999999999999999988 777899
Q ss_pred ccEEEcccCcCCCC-cHHHhcCC------------CCCCCH---HHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCc
Q 000452 1324 RLSIIPQDPVMFEG-TVRSNVDP------------LEEYTD---EQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSM 1387 (1495)
Q Consensus 1324 ~isiIpQdp~LF~G-TIR~NLdp------------~~~~sd---~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~ 1387 (1495)
++|+|.|+|-|-+. |+-+|+.- ++-++. .+..+||+++++.+..-.. -++|||
T Consensus 82 ~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qr-----------a~~LSG 150 (258)
T COG3638 82 DIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQR-----------ASTLSG 150 (258)
T ss_pred hceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHH-----------hccCCc
Confidence 99999999998865 99999731 233444 4578899999998876543 347999
Q ss_pred hHHHHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCchhhhc-cCEEEEEeCcEEEEec
Q 000452 1388 GQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHF--SDCTVITIAHRITSVID-SDMVLLLSHGLIEEYD 1464 (1495)
Q Consensus 1388 GQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f--~~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~g 1464 (1495)
||+||++|||||.++|+|++-|||||+||+.+.+.|++.|++.. .+.|||+.-|.++..+. ||||+-|++|+|+-.|
T Consensus 151 GQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg 230 (258)
T COG3638 151 GQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDG 230 (258)
T ss_pred chhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeC
Confidence 99999999999999999999999999999999999999998865 47899999999999865 9999999999999999
Q ss_pred ChhHHh
Q 000452 1465 SPRKLL 1470 (1495)
Q Consensus 1465 sp~~Ll 1470 (1495)
++.||-
T Consensus 231 ~~~el~ 236 (258)
T COG3638 231 PASELT 236 (258)
T ss_pred Chhhhh
Confidence 999964
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-39 Score=371.30 Aligned_cols=218 Identities=25% Similarity=0.357 Sum_probs=194.9
Q ss_pred cceEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcc
Q 000452 1245 HGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTR 1324 (1495)
Q Consensus 1245 ~g~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~ 1324 (1495)
.+.|+++|++++ + .++|+|+||+|++||++||+|++|||||||+++|+|+++|++|+|.+|| +
T Consensus 37 ~~~l~i~nls~~---~-~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g-------------~ 99 (282)
T cd03291 37 DNNLFFSNLCLV---G-APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG-------------R 99 (282)
T ss_pred CCeEEEEEEEEe---c-ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-------------E
Confidence 456999999985 2 3599999999999999999999999999999999999999999999998 3
Q ss_pred cEEEcccCcCCCCcHHHhcCCCCCCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCC
Q 000452 1325 LSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRK 1404 (1495)
Q Consensus 1325 isiIpQdp~LF~GTIR~NLdp~~~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALLr~~~ 1404 (1495)
++|+||+|.+|++|+++|+.....+.+.++.++++.+++.+.+..+|.++++.+.+.+.+||+|||||++|||||+++|+
T Consensus 100 i~yv~q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~ 179 (282)
T cd03291 100 ISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDAD 179 (282)
T ss_pred EEEEeCcccccccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999998543445567788889999999999999999999999999999999999999999999999
Q ss_pred eEEEEcCCCCCCHHHHHHHHHH-HHHhcCCcEEEEEecCchhhhccCEEEEEeCcEEEEecChhHHhhcCCChHHHH
Q 000452 1405 ILMLDEATASVDTATDNLIQQS-LRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSFSQL 1480 (1495)
Q Consensus 1405 ILiLDEaTsslD~~Td~~Iq~~-Ir~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~ivE~gsp~~Ll~~~~s~f~~l 1480 (1495)
||||||||++||+++...+.+. +++...++|||+|+|+++.+..||+|++|++|+++++|+++++.+. .+.|.+.
T Consensus 180 iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~-~~~~~~~ 255 (282)
T cd03291 180 LYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSL-RPDFSSK 255 (282)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHhc-chHHHHH
Confidence 9999999999999999888764 4555568999999999999999999999999999999999999864 3344433
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=369.78 Aligned_cols=214 Identities=29% Similarity=0.440 Sum_probs=186.5
Q ss_pred EEEeeeeEEeCCCC--CcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHH---HHh
Q 000452 1248 IDLRDLQVRYAPHM--PFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLH---DLR 1322 (1495)
Q Consensus 1248 I~f~nv~~~Y~~~~--~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~---~LR 1322 (1495)
|+++|++++|+... .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+.. ..|
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 78999999996431 2699999999999999999999999999999999999999999999999999877654 357
Q ss_pred cccEEEcccCcCCC-CcHHHhcCCC---CCCC----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHH
Q 000452 1323 TRLSIIPQDPVMFE-GTVRSNVDPL---EEYT----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVC 1394 (1495)
Q Consensus 1323 ~~isiIpQdp~LF~-GTIR~NLdp~---~~~s----d~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~ 1394 (1495)
++++|+||+|.+|. .|+++|+... ...+ ++++.++++..++.+...+.+ .+||+|||||++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~ 150 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYP-----------AQLSGGQKQRVG 150 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcCh-----------hhCCHHHHHHHH
Confidence 89999999999997 5999998631 1122 446788888888865544432 479999999999
Q ss_pred HHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecCchhhhc-cCEEEEEeCcEEEEecChhHHhh
Q 000452 1395 LGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLE 1471 (1495)
Q Consensus 1395 LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~Ll~ 1471 (1495)
||||++++|++|||||||++||+.+...+.+.|++..+ ++|||+|+|+++.+.. ||+|++|++|++++.|+++++++
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 99999999999999999999999999999999998753 7899999999999865 99999999999999999999875
Q ss_pred c
Q 000452 1472 N 1472 (1495)
Q Consensus 1472 ~ 1472 (1495)
+
T Consensus 231 ~ 231 (233)
T cd03258 231 N 231 (233)
T ss_pred C
Confidence 4
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-40 Score=388.55 Aligned_cols=205 Identities=27% Similarity=0.389 Sum_probs=182.0
Q ss_pred CcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHH----hcccEEEcccCcCCCC
Q 000452 1262 PFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDL----RTRLSIIPQDPVMFEG 1337 (1495)
Q Consensus 1262 ~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~L----R~~isiIpQdp~LF~G 1337 (1495)
..+|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.|||.|+...+..++ |++++|+||++.+|+.
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 459999999999999999999999999999999999999999999999999999998887 7899999999999975
Q ss_pred -cHHHhcCCC---CCCC----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCeEEEE
Q 000452 1338 -TVRSNVDPL---EEYT----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLD 1409 (1495)
Q Consensus 1338 -TIR~NLdp~---~~~s----d~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALLr~~~ILiLD 1409 (1495)
||++|+... ...+ ++++.++|+.++|.++..+.| .+||||||||++|||||+++|+||+||
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p-----------~~LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYP-----------DELSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCCh-----------hhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 999999631 1122 456788899998876655544 479999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCchhhh-ccCEEEEEeCcEEEEecChhHHhhcCCChH
Q 000452 1410 EATASVDTATDNLIQQSLRQHF--SDCTVITIAHRITSVI-DSDMVLLLSHGLIEEYDSPRKLLENKSSSF 1477 (1495)
Q Consensus 1410 EaTsslD~~Td~~Iq~~Ir~~f--~~~TVI~IAHRl~ti~-~~DrIlVL~~G~ivE~gsp~~Ll~~~~s~f 1477 (1495)
||||+||+.+.+.+++.+++.. .++|+|+|||+++.+. -||+|++|++|++++.|+|+++++++...|
T Consensus 155 EP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p~~~~ 225 (363)
T TIGR01186 155 EAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEY 225 (363)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCcccHH
Confidence 9999999999999999998764 3799999999999865 599999999999999999999998764444
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=370.61 Aligned_cols=215 Identities=24% Similarity=0.394 Sum_probs=187.7
Q ss_pred EEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccEE
Q 000452 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSI 1327 (1495)
Q Consensus 1248 I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~isi 1327 (1495)
++++||+++|++. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+..++|++++|
T Consensus 1 l~~~~l~~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (242)
T cd03295 1 IEFENVTKRYGGG-KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGY 79 (242)
T ss_pred CEEEEEEEEeCCc-ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEE
Confidence 4789999999753 459999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EcccCcCCC-CcHHHhcCCCC---CCC----HHHHHHHHHHcCCcH--HHHhccCCcccccccCCCCCCchHHHHHHHHH
Q 000452 1328 IPQDPVMFE-GTVRSNVDPLE---EYT----DEQIWEALDKCQLGD--EVRKKEGKLDSKVTENGENWSMGQRQLVCLGR 1397 (1495)
Q Consensus 1328 IpQdp~LF~-GTIR~NLdp~~---~~s----d~ei~~aL~~~~L~~--~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LAR 1397 (1495)
+||+|.+|. .|+++|+.... ..+ ++++.++++..++.+ .. ...+.+||+|||||++|||
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-----------~~~~~~LS~G~~qrv~lar 148 (242)
T cd03295 80 VIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFA-----------DRYPHELSGGQQQRVGVAR 148 (242)
T ss_pred EccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHH-----------hcChhhCCHHHHHHHHHHH
Confidence 999999996 69999996321 122 345777888888763 22 2334679999999999999
Q ss_pred HHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecCchhhhc-cCEEEEEeCcEEEEecChhHHhhcCC
Q 000452 1398 VLLKRRKILMLDEATASVDTATDNLIQQSLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLENKS 1474 (1495)
Q Consensus 1398 ALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~Ll~~~~ 1474 (1495)
|++++|++|+|||||++||+.+...+.+.|++..+ ++|||++||+++.+.. ||+|++|++|++++.|+++++.+++.
T Consensus 149 al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~ 228 (242)
T cd03295 149 ALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRSPA 228 (242)
T ss_pred HHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcCCC
Confidence 99999999999999999999999999999998753 7999999999998754 99999999999999999999976543
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=347.14 Aligned_cols=205 Identities=28% Similarity=0.418 Sum_probs=177.9
Q ss_pred cccEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe------------
Q 000452 615 ETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------ 682 (1495)
Q Consensus 615 ~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~------------ 682 (1495)
...|++++++++|. ++.+++|+||+|++||+++|+||+||||||||++|+|+++|++|+|.++|.
T Consensus 6 ~~~I~vr~v~~~fG---~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ 82 (263)
T COG1127 6 EPLIEVRGVTKSFG---DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYE 82 (263)
T ss_pred cceEEEeeeeeecC---CEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHH
Confidence 35799999999995 568999999999999999999999999999999999999999999999983
Q ss_pred ----EEEEccCCcccC-ccHHHHHhcCC----CCCHHHHHH----HHHHhCcHHH-HhhcCCCCcccccCCCCccchHHH
Q 000452 683 ----KAYVAQSPWIQS-GKIEDNILFGK----EMDRERYNA----VLDACSLEKD-LEILSFGDQTVVGERGINLSGGQK 748 (1495)
Q Consensus 683 ----~ayv~Q~~~l~~-~ti~enI~fg~----~~~~~~~~~----vl~~~~l~~d-l~~l~~gd~t~ig~~g~~LSGGQk 748 (1495)
.|+++|+--+|+ .||+||+.|.. ..+++.+++ -++.++|..+ .+.+ +.+||||++
T Consensus 83 ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~-----------PsELSGGM~ 151 (263)
T COG1127 83 IRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLY-----------PSELSGGMR 151 (263)
T ss_pred HHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhC-----------chhhcchHH
Confidence 599999999986 59999999953 344444443 4778888777 5444 579999999
Q ss_pred HHHHHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHhC--CCEEEEEecCCCcccc-CCEEEEEeCCEEEEecCh
Q 000452 749 QRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLN--SKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKY 825 (1495)
Q Consensus 749 qRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~--~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~~~g~~ 825 (1495)
.|++||||+..||+|+++|||||+|||.++..+ ++++..+.+ +-|+|+||||++.+.. ||+++++.||+|...|++
T Consensus 152 KRvaLARAialdPell~~DEPtsGLDPI~a~~~-~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~ 230 (263)
T COG1127 152 KRVALARAIALDPELLFLDEPTSGLDPISAGVI-DELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTP 230 (263)
T ss_pred HHHHHHHHHhcCCCEEEecCCCCCCCcchHHHH-HHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCH
Confidence 999999999999999999999999999886554 677766544 7899999999998765 999999999999999999
Q ss_pred HHHHhcCCc
Q 000452 826 TDVINSGTD 834 (1495)
Q Consensus 826 ~~l~~~~~~ 834 (1495)
+|+.+++..
T Consensus 231 ~el~~sd~P 239 (263)
T COG1127 231 EELLASDDP 239 (263)
T ss_pred HHHHhCCCH
Confidence 999876543
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-37 Score=370.24 Aligned_cols=467 Identities=18% Similarity=0.172 Sum_probs=335.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccccccccc------cchhHHhcchhHHHhhh
Q 000452 968 MLLIVFVALAFGSSFCILARSTLLATAGYKTATLLFNKMHYCIFRAPMSFFDATPSG------RIINRASTDQSAVDLSI 1041 (1495)
Q Consensus 968 ~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~ll~ap~~ffd~tp~G------~ilnR~s~D~~~vd~~l 1041 (1495)
..+.+|..++.+.......+.++......+.-..+-+.++++-+... .||.-.-.| ..=+|+..|+...-...
T Consensus 87 ~~l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~-~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t 165 (604)
T COG4178 87 QQLQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPR-RYYRLAQAGGIGLIDNPDQRIQEDIRNFTETT 165 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chHHHHhcccccCCCChHHhHHHHHHHHHhhH
Confidence 34678888888888888889999999999998999999998888766 555544443 23468888887766655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHH-HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000452 1042 PALIGSFAFSIIRVLGVIGVMSLVA--------------WQV-FIVF----IPVIATCIWYQQYYISSARELSRLVGVCK 1102 (1495)
Q Consensus 1042 ~~~l~~~~~~~~~~~~~~~~~~~~~--------------~~~-~~v~----ip~~~~~~~~~~~y~~~~r~l~rl~~~~~ 1102 (1495)
-.....++.++++++...+++.-.+ +.+ +.++ +...++..++.+-..+-.-+-.+.|..-|
T Consensus 166 ~~l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR 245 (604)
T COG4178 166 LDLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFR 245 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHH
Confidence 5555556666665555544443111 111 1111 11122334566666666667777777766
Q ss_pred hhHHHHHHHhhcchHHHHhhccHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCCCCC
Q 000452 1103 APLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGYSRPTFHVAAAMEWLGFRLDMLSNITFAFSL-VFLISIPKGFID 1181 (1495)
Q Consensus 1103 sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~~~~~~~~-~~~~~~~~~~~~ 1181 (1495)
..+.. .-+....|-.|+-|+.-.++..+..+.-.+.+......+.++...-...+-+.+.+-. +..-....|.++
T Consensus 246 ~~Lvr----v~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~~f~g~i~ 321 (604)
T COG4178 246 YSLVR----VRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQIT 321 (604)
T ss_pred HHHHH----HHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccHhhhcCcCh
Confidence 55443 3345667777887776666555555544444444333333333322222222221111 111123467888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcC------CCCCCCccccCCCCCCCCCcceEEEeeeeE
Q 000452 1182 PAIAGLAVTYGLTLNNLQAMLIWLACQMENKIISVERIFQYTCI------PSEPPLEIEESRPNHSWPSHGKIDLRDLQV 1255 (1495)
Q Consensus 1182 ~~~~gl~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~------~~E~~~~~~~~~~~~~wp~~g~I~f~nv~~ 1255 (1495)
-|-...+.+-..++...+.|++..+..+..-...+.|+.++.+. +.+.+.... .+-...-.....|.|+|+++
T Consensus 322 ~G~lmqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~nl~l 400 (604)
T COG4178 322 FGGLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTG-RRIDFDDNADHGITLENLSL 400 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCccc-ccccccccccceeEEeeeeE
Confidence 88888888888888899999999999999999999999999741 222111100 00000000146899999999
Q ss_pred EeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccEEEcccCcCC
Q 000452 1256 RYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSIIPQDPVMF 1335 (1495)
Q Consensus 1256 ~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~isiIpQdp~LF 1335 (1495)
.-+++. ..|++++|+|+|||.+-|.|+||||||||+++|.|+.+--+|+|.+-. -+++-++||.|.+-
T Consensus 401 ~~p~~~-~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~-----------~~~~lflpQ~PY~p 468 (604)
T COG4178 401 RTPDGQ-TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA-----------DSALLFLPQRPYLP 468 (604)
T ss_pred ECCCCC-eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC-----------CCceEEecCCCCCC
Confidence 987665 689999999999999999999999999999999999999999988641 24589999999999
Q ss_pred CCcHHHhcC-CCC--CCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCeEEEEcCC
Q 000452 1336 EGTVRSNVD-PLE--EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEAT 1412 (1495)
Q Consensus 1336 ~GTIR~NLd-p~~--~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALLr~~~ILiLDEaT 1412 (1495)
.||+||-|. |.. +++|+|+.++|.+|+|.+.+.++.+--+ =..-||+||||||++||.||++||+++|||||
T Consensus 469 ~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~-----W~~vLS~GEqQRlafARilL~kP~~v~LDEAT 543 (604)
T COG4178 469 QGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDR-----WDRVLSGGEQQRLAFARLLLHKPKWVFLDEAT 543 (604)
T ss_pred CccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCc-----HhhhcChhHHHHHHHHHHHHcCCCEEEEecch
Confidence 999999995 554 3899999999999999999988744222 23469999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhccCEEEEEeC
Q 000452 1413 ASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSH 1457 (1495)
Q Consensus 1413 sslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~~~DrIlVL~~ 1457 (1495)
|+||.+++..+.+.++++.+++|||.|+||.....-.++.+-+++
T Consensus 544 sALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l~~ 588 (604)
T COG4178 544 SALDEETEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLELLD 588 (604)
T ss_pred hccChHHHHHHHHHHHhhCCCCEEEEeccchhhHHHHhhheeecc
Confidence 999999999999999999999999999999888777777776654
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=372.32 Aligned_cols=219 Identities=30% Similarity=0.438 Sum_probs=189.2
Q ss_pred eEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccC-----CccEEEEcCEeCC--CCCHH
Q 000452 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEP-----AAGQILIDGIDIS--LIGLH 1319 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep-----~~G~I~IDG~dI~--~i~l~ 1319 (1495)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++. +.+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (253)
T PRK14267 4 AIETVNLRVYYGS--NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPI 81 (253)
T ss_pred eEEEEeEEEEeCC--eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChH
Confidence 4899999999964 3599999999999999999999999999999999999987 4999999999997 45666
Q ss_pred HHhcccEEEcccCcCCCC-cHHHhcCCC---CC--CC----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchH
Q 000452 1320 DLRTRLSIIPQDPVMFEG-TVRSNVDPL---EE--YT----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQ 1389 (1495)
Q Consensus 1320 ~LR~~isiIpQdp~LF~G-TIR~NLdp~---~~--~s----d~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQ 1389 (1495)
.+|++++|+||+|.+|.+ |+++|+... .. .+ ++++.++++..++.+.+.. .......+||+||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~ 154 (253)
T PRK14267 82 EVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKD-------RLNDYPSNLSGGQ 154 (253)
T ss_pred HHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhh-------hhccChhhCCHHH
Confidence 788999999999999976 999999631 11 11 2457788888887654322 1234456899999
Q ss_pred HHHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-cCEEEEEeCcEEEEecChhH
Q 000452 1390 RQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRK 1468 (1495)
Q Consensus 1390 rQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~ 1468 (1495)
|||++|||||+++|++|||||||++||+.+...+.+.|++..+++|||+|+|+++.+.. ||+|++|++|++++.|++++
T Consensus 155 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 234 (253)
T PRK14267 155 RQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRK 234 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999988677999999999999865 99999999999999999999
Q ss_pred HhhcCC
Q 000452 1469 LLENKS 1474 (1495)
Q Consensus 1469 Ll~~~~ 1474 (1495)
+++++.
T Consensus 235 ~~~~~~ 240 (253)
T PRK14267 235 VFENPE 240 (253)
T ss_pred HHhCCC
Confidence 986543
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=386.71 Aligned_cols=217 Identities=25% Similarity=0.398 Sum_probs=191.6
Q ss_pred eEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccE
Q 000452 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLS 1326 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~is 1326 (1495)
.|+++|++++|.. ..+|+|+||+|++||++||+||||||||||+++|.|+.+|++|+|.+||.++.+.+.+ +++++
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~ig 79 (353)
T TIGR03265 4 YLSIDNIRKRFGA--FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDYG 79 (353)
T ss_pred EEEEEEEEEEeCC--eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 5899999999964 4599999999999999999999999999999999999999999999999999887754 67899
Q ss_pred EEcccCcCCC-CcHHHhcCCC-C--CCC----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHH
Q 000452 1327 IIPQDPVMFE-GTVRSNVDPL-E--EYT----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRV 1398 (1495)
Q Consensus 1327 iIpQdp~LF~-GTIR~NLdp~-~--~~s----d~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARA 1398 (1495)
|+||++.+|. .|+++|+... . ..+ ++++.++++..+|.++....| .+||||||||++||||
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~-----------~~LSgGq~QRvaLARa 148 (353)
T TIGR03265 80 IVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYP-----------GQLSGGQQQRVALARA 148 (353)
T ss_pred EEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCCh-----------hhCCHHHHHHHHHHHH
Confidence 9999999996 5999999632 1 122 456788888888876655444 4789999999999999
Q ss_pred HccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecCchhhhc-cCEEEEEeCcEEEEecChhHHhhcCCC
Q 000452 1399 LLKRRKILMLDEATASVDTATDNLIQQSLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLENKSS 1475 (1495)
Q Consensus 1399 LLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~Ll~~~~s 1475 (1495)
|+++|++|+||||||+||..+...+.+.|++..+ +.|+|+|||+++.+.. ||+|++|++|++++.|+|+++++++..
T Consensus 149 L~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p~~ 228 (353)
T TIGR03265 149 LATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPAT 228 (353)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCC
Confidence 9999999999999999999999999999988654 7899999999998765 999999999999999999999988766
Q ss_pred hHH
Q 000452 1476 SFS 1478 (1495)
Q Consensus 1476 ~f~ 1478 (1495)
.|.
T Consensus 229 ~~~ 231 (353)
T TIGR03265 229 PFV 231 (353)
T ss_pred HHH
Confidence 553
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-39 Score=372.82 Aligned_cols=222 Identities=25% Similarity=0.427 Sum_probs=192.2
Q ss_pred CcceEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccC-----CccEEEEcCEeCCC--C
Q 000452 1244 SHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEP-----AAGQILIDGIDISL--I 1316 (1495)
Q Consensus 1244 ~~g~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep-----~~G~I~IDG~dI~~--i 1316 (1495)
+.+.|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .
T Consensus 16 ~~~~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~ 93 (267)
T PRK14235 16 TEIKMRARDVSVFYGE--KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL 93 (267)
T ss_pred CCceEEEEeEEEEECC--EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc
Confidence 3568999999999964 3599999999999999999999999999999999999975 89999999999975 3
Q ss_pred CHHHHhcccEEEcccCcCCCCcHHHhcCCCC---CC--C----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCc
Q 000452 1317 GLHDLRTRLSIIPQDPVMFEGTVRSNVDPLE---EY--T----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSM 1387 (1495)
Q Consensus 1317 ~l~~LR~~isiIpQdp~LF~GTIR~NLdp~~---~~--s----d~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~ 1387 (1495)
+...+|++++|+||+|.+|.+|+++|+.... .. + ++++.++++.+++.+.+.. .....+.+||+
T Consensus 94 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSg 166 (267)
T PRK14235 94 DVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKD-------RLHEPGTGLSG 166 (267)
T ss_pred chHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhH-------HhhCCcccCCH
Confidence 4567889999999999999999999996311 11 1 3457888999988765432 12344568999
Q ss_pred hHHHHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-cCEEEEEeCcEEEEecCh
Q 000452 1388 GQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSP 1466 (1495)
Q Consensus 1388 GQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp 1466 (1495)
|||||++|||||+.+|++|||||||++||+.+...+.+.|++..+++|||+++|+++.+.. ||+|++|++|++++.|++
T Consensus 167 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~ 246 (267)
T PRK14235 167 GQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDT 246 (267)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999987667899999999999865 899999999999999999
Q ss_pred hHHhhcCC
Q 000452 1467 RKLLENKS 1474 (1495)
Q Consensus 1467 ~~Ll~~~~ 1474 (1495)
++++.++.
T Consensus 247 ~~~~~~~~ 254 (267)
T PRK14235 247 EKMFTNPD 254 (267)
T ss_pred HHHHhCCC
Confidence 99986543
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=371.22 Aligned_cols=211 Identities=29% Similarity=0.414 Sum_probs=183.0
Q ss_pred EEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCH---HHHhcc
Q 000452 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGL---HDLRTR 1324 (1495)
Q Consensus 1248 I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l---~~LR~~ 1324 (1495)
|+++||+++|+.+ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. ..+|++
T Consensus 2 l~~~~l~~~~~~~-~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T TIGR02315 2 LEVENLSKVYPNG-KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR 80 (243)
T ss_pred eEEEeeeeecCCC-cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence 6899999999623 459999999999999999999999999999999999999999999999999987654 457889
Q ss_pred cEEEcccCcCCC-CcHHHhcCCCC---------------CCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCch
Q 000452 1325 LSIIPQDPVMFE-GTVRSNVDPLE---------------EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMG 1388 (1495)
Q Consensus 1325 isiIpQdp~LF~-GTIR~NLdp~~---------------~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~G 1388 (1495)
++|+||+|.+|. .|+++|+.... ...++++.++++.+++.+... ....+||||
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG 149 (243)
T TIGR02315 81 IGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAY-----------QRADQLSGG 149 (243)
T ss_pred eEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhc-----------CCcccCCHH
Confidence 999999999886 59999995210 112345777788887754432 234579999
Q ss_pred HHHHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecCchhhhc-cCEEEEEeCcEEEEecC
Q 000452 1389 QRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGLIEEYDS 1465 (1495)
Q Consensus 1389 QrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gs 1465 (1495)
||||++|||||+++|+||||||||++||+++...+.+.|++..+ ++|+|+|+|+++.+.+ ||+|++|++|++++.|+
T Consensus 150 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~ 229 (243)
T TIGR02315 150 QQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGA 229 (243)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCC
Confidence 99999999999999999999999999999999999999998743 7899999999999865 99999999999999999
Q ss_pred hhHHh
Q 000452 1466 PRKLL 1470 (1495)
Q Consensus 1466 p~~Ll 1470 (1495)
++++.
T Consensus 230 ~~~~~ 234 (243)
T TIGR02315 230 PSELD 234 (243)
T ss_pred HHHhC
Confidence 99874
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=378.49 Aligned_cols=214 Identities=27% Similarity=0.375 Sum_probs=185.4
Q ss_pred EEEeeeeEEeCCCC---CcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCC----CCHHH
Q 000452 1248 IDLRDLQVRYAPHM---PFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISL----IGLHD 1320 (1495)
Q Consensus 1248 I~f~nv~~~Y~~~~---~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~----i~l~~ 1320 (1495)
|+++||+++|+++. +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. .....
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999997543 259999999999999999999999999999999999999999999999999863 34567
Q ss_pred HhcccEEEcccC--cCCCCcHHHhcCCCC---CCCH----HHHHHHHHHcCCcH-HHHhccCCcccccccCCCCCCchHH
Q 000452 1321 LRTRLSIIPQDP--VMFEGTVRSNVDPLE---EYTD----EQIWEALDKCQLGD-EVRKKEGKLDSKVTENGENWSMGQR 1390 (1495)
Q Consensus 1321 LR~~isiIpQdp--~LF~GTIR~NLdp~~---~~sd----~ei~~aL~~~~L~~-~v~~lp~gLdt~v~e~G~nLS~GQr 1390 (1495)
+|++++|++|+| .+|.+|+.+|+.... ..+. +++.++++.+++.+ +.. ....+||+|||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~~LSgGqk 150 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWE-----------KSPFELSGGQM 150 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhcc-----------CCcccCCHHHH
Confidence 899999999998 799999999996321 1232 34677788888753 322 23457999999
Q ss_pred HHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhh-ccCEEEEEeCcEEEEecChhH
Q 000452 1391 QLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHF-SDCTVITIAHRITSVI-DSDMVLLLSHGLIEEYDSPRK 1468 (1495)
Q Consensus 1391 Qrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f-~~~TVI~IAHRl~ti~-~~DrIlVL~~G~ivE~gsp~~ 1468 (1495)
||++|||||+.+|+||||||||++||+.+...+.+.|++.. .++|||+|||+++.+. .||||++|++|++++.|+|++
T Consensus 151 qrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~ 230 (288)
T PRK13643 151 RRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSD 230 (288)
T ss_pred HHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999998764 4789999999999885 599999999999999999999
Q ss_pred Hhhc
Q 000452 1469 LLEN 1472 (1495)
Q Consensus 1469 Ll~~ 1472 (1495)
+.++
T Consensus 231 ~~~~ 234 (288)
T PRK13643 231 VFQE 234 (288)
T ss_pred HHcC
Confidence 8753
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=378.40 Aligned_cols=216 Identities=25% Similarity=0.387 Sum_probs=184.4
Q ss_pred eEEEeeeeEEeCCCC---CcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCC----CHH
Q 000452 1247 KIDLRDLQVRYAPHM---PFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLI----GLH 1319 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~~---~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i----~l~ 1319 (1495)
.|+++||+++|+.+. +++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 389999999996432 3699999999999999999999999999999999999999999999999999754 346
Q ss_pred HHhcccEEEcccC--cCCCCcHHHhcCCCC---CCCH----HHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHH
Q 000452 1320 DLRTRLSIIPQDP--VMFEGTVRSNVDPLE---EYTD----EQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQR 1390 (1495)
Q Consensus 1320 ~LR~~isiIpQdp--~LF~GTIR~NLdp~~---~~sd----~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQr 1390 (1495)
.+|++|+|+||+| .+|+.|+++|+.... ..+. +++.++++.+++... .....+.+||||||
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~----------~~~~~~~~LSgGq~ 151 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRD----------VMSQSPFQMSGGQM 151 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChh----------hhhCCcccCCHHHH
Confidence 7899999999998 688899999996321 2333 334556666665411 12234568999999
Q ss_pred HHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCchhhh-ccCEEEEEeCcEEEEecChh
Q 000452 1391 QLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHF--SDCTVITIAHRITSVI-DSDMVLLLSHGLIEEYDSPR 1467 (1495)
Q Consensus 1391 Qrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f--~~~TVI~IAHRl~ti~-~~DrIlVL~~G~ivE~gsp~ 1467 (1495)
||++|||||+.+|+||||||||++||+.+...+.+.|++.. .++|||+|||+++.+. .||||++|++|++++.|+|+
T Consensus 152 qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~ 231 (286)
T PRK13646 152 RKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPK 231 (286)
T ss_pred HHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999864 4799999999999885 59999999999999999999
Q ss_pred HHhhc
Q 000452 1468 KLLEN 1472 (1495)
Q Consensus 1468 ~Ll~~ 1472 (1495)
+++++
T Consensus 232 ~~~~~ 236 (286)
T PRK13646 232 ELFKD 236 (286)
T ss_pred HHHhC
Confidence 98764
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-39 Score=369.71 Aligned_cols=222 Identities=32% Similarity=0.482 Sum_probs=192.1
Q ss_pred eEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccC-----CccEEEEcCEeCCCCCHHHH
Q 000452 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEP-----AAGQILIDGIDISLIGLHDL 1321 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep-----~~G~I~IDG~dI~~i~l~~L 1321 (1495)
.|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.+.+...+
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 80 (250)
T PRK14247 3 KIEIRDLKVSFGQ--VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIEL 80 (250)
T ss_pred eEEEEeeEEEECC--eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHH
Confidence 4899999999964 3599999999999999999999999999999999999974 69999999999998888889
Q ss_pred hcccEEEcccCcCC-CCcHHHhcCCC---CC------CCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHH
Q 000452 1322 RTRLSIIPQDPVMF-EGTVRSNVDPL---EE------YTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQ 1391 (1495)
Q Consensus 1322 R~~isiIpQdp~LF-~GTIR~NLdp~---~~------~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQ 1391 (1495)
|++++|+||+|.+| +.|+++|+... .. ..++++.++++.+++.+.+. ..+|.. ..+|||||||
T Consensus 81 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---~~~~~~----~~~LSgG~~q 153 (250)
T PRK14247 81 RRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVK---DRLDAP----AGKLSGGQQQ 153 (250)
T ss_pred hccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchh---hhhcCC----cccCCHHHHH
Confidence 99999999999755 67999999631 11 11356788999999865432 123333 4579999999
Q ss_pred HHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhh-ccCEEEEEeCcEEEEecChhHHh
Q 000452 1392 LVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVI-DSDMVLLLSHGLIEEYDSPRKLL 1470 (1495)
Q Consensus 1392 rl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~-~~DrIlVL~~G~ivE~gsp~~Ll 1470 (1495)
|++|||||+++|+||+|||||++||+.+...+.+.|++..+++|+|+|+|+++.+. .||+|++|++|++++.|+++++.
T Consensus 154 rv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 154 RLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVF 233 (250)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHHH
Confidence 99999999999999999999999999999999999998777899999999999986 59999999999999999999998
Q ss_pred hcCCChH
Q 000452 1471 ENKSSSF 1477 (1495)
Q Consensus 1471 ~~~~s~f 1477 (1495)
+++...+
T Consensus 234 ~~~~~~~ 240 (250)
T PRK14247 234 TNPRHEL 240 (250)
T ss_pred cCCccHH
Confidence 7654334
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=374.17 Aligned_cols=215 Identities=28% Similarity=0.430 Sum_probs=189.1
Q ss_pred eEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccE
Q 000452 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLS 1326 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~is 1326 (1495)
.|+++|++++|+.+.+++|+|+||+|++||++||+|++|||||||+++|+|+++|++|+|.+||.++...+...+|++++
T Consensus 7 ~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~ 86 (271)
T PRK13632 7 MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIG 86 (271)
T ss_pred EEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceE
Confidence 59999999999744456999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EEcccC--cCCCCcHHHhcCCC---CCCCHH----HHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHH
Q 000452 1327 IIPQDP--VMFEGTVRSNVDPL---EEYTDE----QIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGR 1397 (1495)
Q Consensus 1327 iIpQdp--~LF~GTIR~NLdp~---~~~sd~----ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LAR 1397 (1495)
|+||+| .++..|+++|+... ...+++ .+.+++++.++.+...+. ..+||+|||||++|||
T Consensus 87 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrl~lar 155 (271)
T PRK13632 87 IIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKE-----------PQNLSGGQKQRVAIAS 155 (271)
T ss_pred EEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCC-----------cccCCHHHHHHHHHHH
Confidence 999998 45677999999642 123333 356677888876655443 3589999999999999
Q ss_pred HHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecCchhhhccCEEEEEeCcEEEEecChhHHhhc
Q 000452 1398 VLLKRRKILMLDEATASVDTATDNLIQQSLRQHFS--DCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLEN 1472 (1495)
Q Consensus 1398 ALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~--~~TVI~IAHRl~ti~~~DrIlVL~~G~ivE~gsp~~Ll~~ 1472 (1495)
||+++|++|+|||||++||..+...+.+.|++..+ ++|+|+++|+++.+..||+|++|++|++++.|+++++.++
T Consensus 156 al~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 232 (271)
T PRK13632 156 VLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232 (271)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcC
Confidence 99999999999999999999999999999998753 4899999999999888999999999999999999998764
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=376.87 Aligned_cols=214 Identities=29% Similarity=0.434 Sum_probs=187.1
Q ss_pred eEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCC--CCCHHHHhcc
Q 000452 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDIS--LIGLHDLRTR 1324 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~--~i~l~~LR~~ 1324 (1495)
.|+++|++++|+.+ .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.|+. ..+..++|++
T Consensus 5 ~l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ 83 (283)
T PRK13636 5 ILKVEELNYNYSDG-THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRES 83 (283)
T ss_pred eEEEEeEEEEeCCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhh
Confidence 59999999999633 45999999999999999999999999999999999999999999999999984 3456778999
Q ss_pred cEEEcccC--cCCCCcHHHhcCCC---CCCCH----HHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHH
Q 000452 1325 LSIIPQDP--VMFEGTVRSNVDPL---EEYTD----EQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCL 1395 (1495)
Q Consensus 1325 isiIpQdp--~LF~GTIR~NLdp~---~~~sd----~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~L 1395 (1495)
++|+||+| .+|+.|+++|+... ...+. +++.++++.+++.+... ....+||+|||||++|
T Consensus 84 ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LS~G~~qrl~l 152 (283)
T PRK13636 84 VGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKD-----------KPTHCLSFGQKKRVAI 152 (283)
T ss_pred EEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhh-----------CCcccCCHHHHHHHHH
Confidence 99999998 57899999999632 12232 34677788888865432 2356899999999999
Q ss_pred HHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecCchhhh-ccCEEEEEeCcEEEEecChhHHhhc
Q 000452 1396 GRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFS--DCTVITIAHRITSVI-DSDMVLLLSHGLIEEYDSPRKLLEN 1472 (1495)
Q Consensus 1396 ARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~--~~TVI~IAHRl~ti~-~~DrIlVL~~G~ivE~gsp~~Ll~~ 1472 (1495)
||||+.+|+||||||||++||+++...+.+.|++..+ ++|||+++|+++.+. .||||++|++|++++.|+++++++.
T Consensus 153 araL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 232 (283)
T PRK13636 153 AGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 232 (283)
T ss_pred HHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999988764 789999999999987 5999999999999999999998753
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=363.80 Aligned_cols=202 Identities=25% Similarity=0.386 Sum_probs=176.0
Q ss_pred EEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccEE
Q 000452 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSI 1327 (1495)
Q Consensus 1248 I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~isi 1327 (1495)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+ ..+++++|
T Consensus 1 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~--~~~~~i~~ 76 (213)
T cd03259 1 LELKGLSKTYGS--VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVP--PERRNIGM 76 (213)
T ss_pred CeeeeeEEEeCC--eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCc--hhhccEEE
Confidence 478999999964 45999999999999999999999999999999999999999999999999998654 35778999
Q ss_pred EcccCcCCC-CcHHHhcCCC-C--CCC----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHH
Q 000452 1328 IPQDPVMFE-GTVRSNVDPL-E--EYT----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVL 1399 (1495)
Q Consensus 1328 IpQdp~LF~-GTIR~NLdp~-~--~~s----d~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAL 1399 (1495)
+||+|.+|. .|+++|+... . ..+ ++++.++++.+++.+...+.| .+||||||||++|||||
T Consensus 77 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrl~la~al 145 (213)
T cd03259 77 VFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYP-----------HELSGGQQQRVALARAL 145 (213)
T ss_pred EcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCh-----------hhCCHHHHHHHHHHHHH
Confidence 999999886 5999999632 1 112 345778888888876554433 47999999999999999
Q ss_pred ccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCchhhhc-cCEEEEEeCcEEEEec
Q 000452 1400 LKRRKILMLDEATASVDTATDNLIQQSLRQHF--SDCTVITIAHRITSVID-SDMVLLLSHGLIEEYD 1464 (1495)
Q Consensus 1400 Lr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f--~~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~g 1464 (1495)
+++|++|||||||++||+++...+.+.|++.. .++|||+|+|+++.+.+ ||+|++|++|++++.|
T Consensus 146 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 146 AREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999999864 37899999999998765 9999999999998865
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=366.76 Aligned_cols=208 Identities=24% Similarity=0.330 Sum_probs=181.5
Q ss_pred eEEEeeeeEEeCCCC--CcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHH---H
Q 000452 1247 KIDLRDLQVRYAPHM--PFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHD---L 1321 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~~--~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~---L 1321 (1495)
.++++||+++|+.+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.|+..++.++ +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 489999999997532 46999999999999999999999999999999999999999999999999999887654 3
Q ss_pred h-cccEEEcccCcCCCC-cHHHhcCC---CCCCC----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHH
Q 000452 1322 R-TRLSIIPQDPVMFEG-TVRSNVDP---LEEYT----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQL 1392 (1495)
Q Consensus 1322 R-~~isiIpQdp~LF~G-TIR~NLdp---~~~~s----d~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQr 1392 (1495)
| ++++|+||+|.+|.+ |+++|+.. +...+ ++++.++++.+++.+...+. ..+||||||||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LSgG~~qr 153 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHR-----------PSELSGGERQR 153 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCC-----------hhhCCHHHHHH
Confidence 3 679999999999876 99999863 11222 34577888888876554332 35799999999
Q ss_pred HHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCchhhhccCEEEEEeCcEEEEecC
Q 000452 1393 VCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHF--SDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 1465 (1495)
Q Consensus 1393 l~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f--~~~TVI~IAHRl~ti~~~DrIlVL~~G~ivE~gs 1465 (1495)
++||||++.+|+||||||||++||+++...+.+.|++.. +++|||+|+|+++.+..+|++++|++|++++.++
T Consensus 154 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 154 VAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 999999999999999999999999999999999999864 4799999999999999999999999999998775
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=340.77 Aligned_cols=469 Identities=21% Similarity=0.294 Sum_probs=337.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccccccccccchhHHhcchhHHHhhhHHHHHHHH
Q 000452 970 LIVFVALAFGSSFCILARSTLLATAGYKTATLLFNKMHYCIFRAPMSFFDATPSGRIINRASTDQSAVDLSIPALIGSFA 1049 (1495)
Q Consensus 970 ~~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~ll~ap~~ffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~ 1049 (1495)
+..|.++.....+...+.......+|.+.-.+++.++.++++.+|+.-+++-..+|++.++++|+..|... ...+..+.
T Consensus 51 l~~f~~llllf~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~ISf~-~s~lp~~~ 129 (546)
T COG4615 51 LPEFLGLLLLFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNISFA-FSRLPELV 129 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcccchhhhhcccccceeeh-HhhhHHHH
Confidence 33444444444445556667778889999999999999999999999999999999999999999999833 33455678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcchHHHHhhccHHHHH
Q 000452 1050 FSIIRVLGVIGVMSLVAWQVFIVFIPVIATCIWYQQYYISSARELSRLVGVCKAPLIQHFAETVSGSTTIRSFDQESRFI 1129 (1495)
Q Consensus 1050 ~~~~~~~~~~~~~~~~~~~~~~v~ip~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~ 1129 (1495)
++.+..+++++.+++.+|+++.+.+..+++.++.+..-++..-+-.+...++...+.++++..++|.+..+..+...+..
T Consensus 130 qa~il~l~s~aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~ 209 (546)
T COG4615 130 QAIILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYV 209 (546)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHH
Confidence 88888999999999999998877666555544433322222222222333456678999999999999988876544433
Q ss_pred HHHHH------HHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH---HHHHHHHH
Q 000452 1130 DTNME------LMDGYSRPTFHVAAAMEWLGFRLDMLSNITFAFSLVFLISIPKGFIDPAIAGLAVTYG---LTLNNLQA 1200 (1495)
Q Consensus 1130 ~~~~~------~~d~~~~~~~~~~~~~~wl~~rl~~l~~~~~~~~~~~~~~~~~~~~~~~~~gl~l~~~---~~l~~~~~ 1200 (1495)
....- .-+...+..........|-+..+-.+..+++ .+. ...+.-+.. .+.+++ +.+...+.
T Consensus 210 h~~~~~~~a~~~r~~~~~~n~f~~la~~~~ni~l~~lIGlvf-----~la-l~~~w~st~---~a~tivlvlLflr~pL~ 280 (546)
T COG4615 210 HNNLYIPDAQEYRHHIIRANTFHLLAVNWSNIMLLGLIGLVF-----WLA-LSLGWASTN---VAATIVLVLLFLRTPLL 280 (546)
T ss_pred HhhhcCcchHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH-----HHH-Hhhccchhh---HHHHHHHHHHHHhhHHH
Confidence 22211 1111112222222344454433221111110 011 111111111 233333 33455666
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHhcCCCCCCCccccCCCCCCCCCcceEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEE
Q 000452 1201 MLIWLACQMENKIISVERIFQYTCIPSEPPLEIEESRPNHSWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGI 1280 (1495)
Q Consensus 1201 ~~~~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgI 1280 (1495)
.++...-.+-...++..||.++...|..+. .....+.++| ..||++||.|.|.++. -=+..||++|+.||.|=|
T Consensus 281 s~vgilP~l~~AqvA~~kiakle~~~~~a~--~~~~q~~p~~---~~lelrnvrfay~~~~-FhvgPiNl~ikrGelvFl 354 (546)
T COG4615 281 SAVGILPTLLTAQVAFNKIAKLELAPYKAD--FPRPQAFPDW---KTLELRNVRFAYQDNA-FHVGPINLTIKRGELVFL 354 (546)
T ss_pred HHHhhhhHHHHHHHHHHHHHHhhcCCcccc--CCCCCcCCcc---cceeeeeeeeccCccc-ceecceeeEEecCcEEEE
Confidence 777777778888899999998876332221 1222233345 4699999999998764 347789999999999999
Q ss_pred EcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccEEEcccCcCCCCcHHHhcCCCCCCCHHHHHHHHHH
Q 000452 1281 VGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDK 1360 (1495)
Q Consensus 1281 VGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~isiIpQdp~LF~GTIR~NLdp~~~~sd~ei~~aL~~ 1360 (1495)
+|.+||||||++++|.|+|.|++|+|++||.+++.-++++.|+-++-|.-|-+||+.++ .|-+..+.+.|..-|++
T Consensus 355 iG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll----~~e~~as~q~i~~~Lqr 430 (546)
T COG4615 355 IGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL----GPEGKASPQLIEKWLQR 430 (546)
T ss_pred ECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh----CCccCCChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998664 34444788888777877
Q ss_pred cCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhc--CCcEEEE
Q 000452 1361 CQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHF--SDCTVIT 1438 (1495)
Q Consensus 1361 ~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f--~~~TVI~ 1438 (1495)
..+.....-..+.+ + ...||-|||.|+++--|++-+.+|+++||=-|.-||.=.+...+.+-... .|+|||.
T Consensus 431 Lel~~ktsl~d~~f-s-----~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~a 504 (546)
T COG4615 431 LELAHKTSLNDGRF-S-----NLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFA 504 (546)
T ss_pred HHHhhhhcccCCcc-c-----ccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEE
Confidence 77655443222211 1 13689999999999999999999999999999999999988777664433 4899999
Q ss_pred EecCchhhhccCEEEEEeCcEEEEec
Q 000452 1439 IAHRITSVIDSDMVLLLSHGLIEEYD 1464 (1495)
Q Consensus 1439 IAHRl~ti~~~DrIlVL~~G~ivE~g 1464 (1495)
|+|+-+-...+||++.|++|+++|.-
T Consensus 505 IsHDd~YF~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 505 ISHDDHYFIHADRLLEMRNGQLSELT 530 (546)
T ss_pred EecCchhhhhHHHHHHHhcCceeecc
Confidence 99999999999999999999999863
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-39 Score=366.27 Aligned_cols=211 Identities=25% Similarity=0.366 Sum_probs=182.8
Q ss_pred EEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccEE
Q 000452 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSI 1327 (1495)
Q Consensus 1248 I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~isi 1327 (1495)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+.+. +++++|
T Consensus 2 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i~~ 78 (236)
T TIGR03864 2 LEVAGLSFAYGA--RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARLGV 78 (236)
T ss_pred EEEEeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhEEE
Confidence 689999999963 35999999999999999999999999999999999999999999999999998776544 458999
Q ss_pred EcccCcC-CCCcHHHhcCCCC---CCC----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHH
Q 000452 1328 IPQDPVM-FEGTVRSNVDPLE---EYT----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVL 1399 (1495)
Q Consensus 1328 IpQdp~L-F~GTIR~NLdp~~---~~s----d~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAL 1399 (1495)
+||+|.+ +..|+++|+.... ..+ ++++.+.++..++.+. ......+||+|||||++||||+
T Consensus 79 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G~~qrl~laral 147 (236)
T TIGR03864 79 VFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAER-----------ADDKVRELNGGHRRRVEIARAL 147 (236)
T ss_pred eCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhh-----------hcCChhhCCHHHHHHHHHHHHH
Confidence 9999987 5679999996421 122 2345666776666433 2334457999999999999999
Q ss_pred ccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCchhhhccCEEEEEeCcEEEEecChhHHhhc
Q 000452 1400 LKRRKILMLDEATASVDTATDNLIQQSLRQHF--SDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLEN 1472 (1495)
Q Consensus 1400 Lr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f--~~~TVI~IAHRl~ti~~~DrIlVL~~G~ivE~gsp~~Ll~~ 1472 (1495)
+++|+||||||||++||+.+...+.+.|++.. .++|+|+++|+++.+..||+|++|++|++++.|+++++.++
T Consensus 148 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 148 LHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 99999999999999999999999999999875 37899999999999988999999999999999999999864
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=351.99 Aligned_cols=178 Identities=32% Similarity=0.543 Sum_probs=167.1
Q ss_pred EEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccEE
Q 000452 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSI 1327 (1495)
Q Consensus 1248 I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~isi 1327 (1495)
|+++|++++|+...+++|+|+||+|++||++||+|++|||||||+++|+|+++|++|+|.+||.++... ...+|++++|
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 79 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLISV 79 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEEE
Confidence 578999999976444699999999999999999999999999999999999999999999999998776 6678899999
Q ss_pred EcccCcCCCCcHHHhcCCCCCCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCeEE
Q 000452 1328 IPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILM 1407 (1495)
Q Consensus 1328 IpQdp~LF~GTIR~NLdp~~~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALLr~~~ILi 1407 (1495)
+||+|.+|++|+++|+ ..+||+|||||++||||++++|++||
T Consensus 80 ~~q~~~~~~~tv~~~i--------------------------------------~~~LS~G~~qrv~laral~~~p~~ll 121 (178)
T cd03247 80 LNQRPYLFDTTLRNNL--------------------------------------GRRFSGGERQRLALARILLQDAPIVL 121 (178)
T ss_pred EccCCeeecccHHHhh--------------------------------------cccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999998 45799999999999999999999999
Q ss_pred EEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhccCEEEEEeCcEEEEec
Q 000452 1408 LDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYD 1464 (1495)
Q Consensus 1408 LDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~ivE~g 1464 (1495)
|||||++||..+...+.+.|++..+++|+|+++|+++.+..||++++|++|++++.|
T Consensus 122 lDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 122 LDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999887789999999999999899999999999999865
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=364.03 Aligned_cols=212 Identities=23% Similarity=0.419 Sum_probs=179.3
Q ss_pred EEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHH-hcccE
Q 000452 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDL-RTRLS 1326 (1495)
Q Consensus 1248 I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~L-R~~is 1326 (1495)
|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+..+. |++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (222)
T cd03224 1 LEVENLNAGYGK--SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIG 78 (222)
T ss_pred CEEeeEEeecCC--eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeE
Confidence 578999999964 359999999999999999999999999999999999999999999999999988877664 67899
Q ss_pred EEcccCcCCCC-cHHHhcCCCCC-CC----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHc
Q 000452 1327 IIPQDPVMFEG-TVRSNVDPLEE-YT----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLL 1400 (1495)
Q Consensus 1327 iIpQdp~LF~G-TIR~NLdp~~~-~s----d~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALL 1400 (1495)
|+||+|.+|.+ |+++|+..... +. .+++.++++..+ +++........+||+|||||++||||++
T Consensus 79 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~----------~l~~~~~~~~~~LS~G~~qrv~laral~ 148 (222)
T cd03224 79 YVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFP----------RLKERRKQLAGTLSGGEQQMLAIARALM 148 (222)
T ss_pred EeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHH----------hhhhhhhCchhhCCHHHHHHHHHHHHHh
Confidence 99999999987 99999964221 11 122333444431 1222223445679999999999999999
Q ss_pred cCCCeEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-cCEEEEEeCcEEEEecChhHHhh
Q 000452 1401 KRRKILMLDEATASVDTATDNLIQQSLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLE 1471 (1495)
Q Consensus 1401 r~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~Ll~ 1471 (1495)
++|++|+|||||++||.++...+.+.|++.. .++|+|+++|+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 149 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (222)
T cd03224 149 SRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221 (222)
T ss_pred cCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHhc
Confidence 9999999999999999999999999998865 47899999999998765 99999999999999999988764
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-39 Score=383.28 Aligned_cols=216 Identities=25% Similarity=0.402 Sum_probs=189.8
Q ss_pred eEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccE
Q 000452 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLS 1326 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~is 1326 (1495)
.|+++|++++|+. ..+|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.|+...+. .|++++
T Consensus 2 ~L~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i~ 77 (353)
T PRK10851 2 SIEIANIKKSFGR--TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKVG 77 (353)
T ss_pred EEEEEEEEEEeCC--eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCEE
Confidence 4889999999964 359999999999999999999999999999999999999999999999999987653 467899
Q ss_pred EEcccCcCCCC-cHHHhcCCC-C------CCC----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHH
Q 000452 1327 IIPQDPVMFEG-TVRSNVDPL-E------EYT----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVC 1394 (1495)
Q Consensus 1327 iIpQdp~LF~G-TIR~NLdp~-~------~~s----d~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~ 1394 (1495)
|+||++.+|.. |+++|+... . ..+ ++++.++++.+++.+...+.| ..||||||||++
T Consensus 78 ~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgGq~QRva 146 (353)
T PRK10851 78 FVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP-----------AQLSGGQKQRVA 146 (353)
T ss_pred EEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHH
Confidence 99999999975 999999732 1 122 346778899998876655443 468999999999
Q ss_pred HHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecCchhhhc-cCEEEEEeCcEEEEecChhHHhh
Q 000452 1395 LGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLE 1471 (1495)
Q Consensus 1395 LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~Ll~ 1471 (1495)
|||||+++|++|+|||||++||..+...+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+|+++++
T Consensus 147 lArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~ 226 (353)
T PRK10851 147 LARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWR 226 (353)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999998764 6899999999998765 99999999999999999999998
Q ss_pred cCCChH
Q 000452 1472 NKSSSF 1477 (1495)
Q Consensus 1472 ~~~s~f 1477 (1495)
++...|
T Consensus 227 ~p~~~~ 232 (353)
T PRK10851 227 EPATRF 232 (353)
T ss_pred CccchH
Confidence 765444
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=374.33 Aligned_cols=217 Identities=26% Similarity=0.394 Sum_probs=187.2
Q ss_pred EEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHH----hcc
Q 000452 1249 DLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDL----RTR 1324 (1495)
Q Consensus 1249 ~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~L----R~~ 1324 (1495)
.++|++.+|.. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+ +++
T Consensus 26 ~~~~~~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~ 103 (269)
T cd03294 26 SKEEILKKTGQ--TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKK 103 (269)
T ss_pred hhhhhhhhcCC--ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCc
Confidence 46688888864 359999999999999999999999999999999999999999999999999988775543 468
Q ss_pred cEEEcccCcCCC-CcHHHhcCCC---CCC----CHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHH
Q 000452 1325 LSIIPQDPVMFE-GTVRSNVDPL---EEY----TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLG 1396 (1495)
Q Consensus 1325 isiIpQdp~LF~-GTIR~NLdp~---~~~----sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LA 1396 (1495)
++|+||+|.+|. .|+++|+... ... .++++.++++.+++.+.+...| .+||+|||||++||
T Consensus 104 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrv~lA 172 (269)
T cd03294 104 ISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYP-----------DELSGGMQQRVGLA 172 (269)
T ss_pred EEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCc-----------ccCCHHHHHHHHHH
Confidence 999999999885 5999999631 111 2346788899999877665554 36899999999999
Q ss_pred HHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecCchhhhc-cCEEEEEeCcEEEEecChhHHhhcC
Q 000452 1397 RVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLENK 1473 (1495)
Q Consensus 1397 RALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~Ll~~~ 1473 (1495)
|||+++|+||||||||++||+.+...+.+.|++..+ ++|+|+++|+++.+.. ||+|++|++|++++.|+++++++++
T Consensus 173 ral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 252 (269)
T cd03294 173 RALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNP 252 (269)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhCc
Confidence 999999999999999999999999999999998743 7999999999998765 9999999999999999999998765
Q ss_pred CChHH
Q 000452 1474 SSSFS 1478 (1495)
Q Consensus 1474 ~s~f~ 1478 (1495)
...|.
T Consensus 253 ~~~~~ 257 (269)
T cd03294 253 ANDYV 257 (269)
T ss_pred CcHHH
Confidence 54443
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-39 Score=370.67 Aligned_cols=219 Identities=27% Similarity=0.472 Sum_probs=191.4
Q ss_pred ceEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccc-----CCccEEEEcCEeCCC--CCH
Q 000452 1246 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVE-----PAAGQILIDGIDISL--IGL 1318 (1495)
Q Consensus 1246 g~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~e-----p~~G~I~IDG~dI~~--i~l 1318 (1495)
..|+++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+.
T Consensus 19 ~~l~~~nl~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 96 (267)
T PRK14237 19 IALSTKDLHVYYGK--KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINV 96 (267)
T ss_pred eEEEEeeEEEEECC--eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCCh
Confidence 36999999999953 459999999999999999999999999999999999997 579999999999864 346
Q ss_pred HHHhcccEEEcccCcCCCCcHHHhcCCC----CCC----CHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHH
Q 000452 1319 HDLRTRLSIIPQDPVMFEGTVRSNVDPL----EEY----TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQR 1390 (1495)
Q Consensus 1319 ~~LR~~isiIpQdp~LF~GTIR~NLdp~----~~~----sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQr 1390 (1495)
..+|+.++|+||+|.+|.+|+++|+... +.. .++++.++++.+++.+.+.. .....+..||+|||
T Consensus 97 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LS~G~~ 169 (267)
T PRK14237 97 YEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKD-------DLHKSALTLSGGQQ 169 (267)
T ss_pred HHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhh-------hhcCCcccCCHHHH
Confidence 6789999999999999999999999632 111 23557788899988755432 23455678999999
Q ss_pred HHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-cCEEEEEeCcEEEEecChhHH
Q 000452 1391 QLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKL 1469 (1495)
Q Consensus 1391 Qrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~L 1469 (1495)
||++||||++++|++|+|||||++||+.+...+.+.|++..++.|||+|+|+++.+.. ||+|++|++|++++.|+++++
T Consensus 170 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 249 (267)
T PRK14237 170 QRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNI 249 (267)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998778999999999998865 999999999999999999999
Q ss_pred hhcC
Q 000452 1470 LENK 1473 (1495)
Q Consensus 1470 l~~~ 1473 (1495)
.+.+
T Consensus 250 ~~~~ 253 (267)
T PRK14237 250 FTNP 253 (267)
T ss_pred hcCC
Confidence 8654
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-39 Score=369.36 Aligned_cols=219 Identities=27% Similarity=0.458 Sum_probs=189.2
Q ss_pred eEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcc---ccC--CccEEEEcCEeCCCC--CHH
Q 000452 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRI---VEP--AAGQILIDGIDISLI--GLH 1319 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl---~ep--~~G~I~IDG~dI~~i--~l~ 1319 (1495)
.|+++|++++|+. ..+|+|+||+|++||.+||+|+||||||||+++|.|+ ++| ++|+|.+||.++.+. +..
T Consensus 3 ~l~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 80 (250)
T PRK14245 3 KIDARDVNFWYGD--FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVD 80 (250)
T ss_pred EEEEEEEEEEECC--EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHH
Confidence 5899999999964 3599999999999999999999999999999999997 344 589999999999764 346
Q ss_pred HHhcccEEEcccCcCCCCcHHHhcCCC-C--C-----CCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHH
Q 000452 1320 DLRTRLSIIPQDPVMFEGTVRSNVDPL-E--E-----YTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQ 1391 (1495)
Q Consensus 1320 ~LR~~isiIpQdp~LF~GTIR~NLdp~-~--~-----~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQ 1391 (1495)
.+|++++|+||+|.+|.+|+++|+... . . ..+++++++++.+++.+.+.. .....+.+||+||||
T Consensus 81 ~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~q 153 (250)
T PRK14245 81 ELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKD-------KLKESAFALSGGQQQ 153 (250)
T ss_pred HHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhh-------hhhCCcccCCHHHHH
Confidence 778899999999999999999999631 1 1 123467888888888655432 123456689999999
Q ss_pred HHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-cCEEEEEeCcEEEEecChhHHh
Q 000452 1392 LVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLL 1470 (1495)
Q Consensus 1392 rl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~Ll 1470 (1495)
|++|||||+++|+||||||||++||+.+...+.+.|++..+++|||+|+|+++.+.. ||+|++|++|++++.|++++++
T Consensus 154 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 154 RLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIF 233 (250)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999999999999999998778999999999999865 9999999999999999999998
Q ss_pred hcCC
Q 000452 1471 ENKS 1474 (1495)
Q Consensus 1471 ~~~~ 1474 (1495)
+++.
T Consensus 234 ~~~~ 237 (250)
T PRK14245 234 TNPE 237 (250)
T ss_pred cCCC
Confidence 7654
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=371.62 Aligned_cols=221 Identities=25% Similarity=0.436 Sum_probs=190.2
Q ss_pred EEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccc-----CCccEEEEcCEeCCCCC--HHH
Q 000452 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVE-----PAAGQILIDGIDISLIG--LHD 1320 (1495)
Q Consensus 1248 I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~e-----p~~G~I~IDG~dI~~i~--l~~ 1320 (1495)
-+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|++. |++|+|.++|.++...+ ...
T Consensus 6 ~~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 83 (251)
T PRK14244 6 ASVKNLNLWYGS--KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVL 83 (251)
T ss_pred EEeeeEEEEECC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHH
Confidence 478999999963 469999999999999999999999999999999999986 47999999999987653 346
Q ss_pred HhcccEEEcccCcCCCCcHHHhcCCC---CC------CCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHH
Q 000452 1321 LRTRLSIIPQDPVMFEGTVRSNVDPL---EE------YTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQ 1391 (1495)
Q Consensus 1321 LR~~isiIpQdp~LF~GTIR~NLdp~---~~------~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQ 1391 (1495)
+|++++|+||+|.+|.+|+++|+... .. ..++++.++++..++.+.+. +.+...+.+||+||||
T Consensus 84 ~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~q 156 (251)
T PRK14244 84 LRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELG-------DRLKDSAFELSGGQQQ 156 (251)
T ss_pred HhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhh-------hHhhcChhhCCHHHHH
Confidence 78999999999999999999998631 11 12356778889988865432 1223445689999999
Q ss_pred HHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-cCEEEEEeCcEEEEecChhHHh
Q 000452 1392 LVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLL 1470 (1495)
Q Consensus 1392 rl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~Ll 1470 (1495)
|++||||++++|+||||||||++||..+...+.+.|++..+++|||+|+|+++.+.. ||+|++|++|++++.|++++++
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (251)
T PRK14244 157 RLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIF 236 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999988778999999999999875 9999999999999999999998
Q ss_pred hcCCChH
Q 000452 1471 ENKSSSF 1477 (1495)
Q Consensus 1471 ~~~~s~f 1477 (1495)
+++...+
T Consensus 237 ~~~~~~~ 243 (251)
T PRK14244 237 KNPQSSK 243 (251)
T ss_pred cCCCChH
Confidence 7655444
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-39 Score=370.13 Aligned_cols=222 Identities=27% Similarity=0.435 Sum_probs=189.3
Q ss_pred eEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccc-----CCccEEEEcCEeCCC--CCHH
Q 000452 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVE-----PAAGQILIDGIDISL--IGLH 1319 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~e-----p~~G~I~IDG~dI~~--i~l~ 1319 (1495)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~ 81 (251)
T PRK14251 4 IISAKDVHLSYGN--YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLV 81 (251)
T ss_pred eEEEEeeEEEECC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHH
Confidence 4899999999964 359999999999999999999999999999999999997 479999999999864 3456
Q ss_pred HHhcccEEEcccCcCCCCcHHHhcCCCC---CC-----CHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHH
Q 000452 1320 DLRTRLSIIPQDPVMFEGTVRSNVDPLE---EY-----TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQ 1391 (1495)
Q Consensus 1320 ~LR~~isiIpQdp~LF~GTIR~NLdp~~---~~-----sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQ 1391 (1495)
.+|+.++|+||+|.+|++|+++|+.... .. .++++.++++.+++++.+. ..++ ....+||+||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---~~~~----~~~~~LS~Gq~q 154 (251)
T PRK14251 82 ELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETK---DNLD----RNAQAFSGGQQQ 154 (251)
T ss_pred HhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchH---HHhc----cChhhCCHHHHH
Confidence 6788999999999999999999996321 11 2345677888888753221 1222 345689999999
Q ss_pred HHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-cCEEEEEeCcEEEEecChhHHh
Q 000452 1392 LVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLL 1470 (1495)
Q Consensus 1392 rl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~Ll 1470 (1495)
|++||||++++|++|||||||++||+++...+.+.|++..+++|||+|+|+++.+.. ||+|++|++|++++.|+++++.
T Consensus 155 r~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14251 155 RICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMF 234 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999988777999999999999876 9999999999999999999998
Q ss_pred hcCCChH
Q 000452 1471 ENKSSSF 1477 (1495)
Q Consensus 1471 ~~~~s~f 1477 (1495)
..+.-.|
T Consensus 235 ~~~~~~~ 241 (251)
T PRK14251 235 IAPKKQI 241 (251)
T ss_pred hCCCCHH
Confidence 6544333
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-39 Score=373.61 Aligned_cols=216 Identities=27% Similarity=0.415 Sum_probs=192.1
Q ss_pred ceEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCc---cEEEEcCEeCCCCCHHHHh
Q 000452 1246 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAA---GQILIDGIDISLIGLHDLR 1322 (1495)
Q Consensus 1246 g~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~---G~I~IDG~dI~~i~l~~LR 1322 (1495)
+.|+++|++++|++...++|+|+||+|++||.+||+|++|||||||+++|.|+++|++ |+|.+||.++...+...+|
T Consensus 4 ~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 4 NIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred ceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 4699999999996543459999999999999999999999999999999999999987 8999999999888878889
Q ss_pred cccEEEcccC--cCCCCcHHHhcCCC---CCCCH----HHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHH
Q 000452 1323 TRLSIIPQDP--VMFEGTVRSNVDPL---EEYTD----EQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLV 1393 (1495)
Q Consensus 1323 ~~isiIpQdp--~LF~GTIR~NLdp~---~~~sd----~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl 1393 (1495)
++++|+||+| .+++.|+++||... ...++ +++.++++.+++.+.....| .+||+|||||+
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LS~G~~qrv 152 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEP-----------ANLSGGQKQRV 152 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCHHHHHHH
Confidence 9999999999 46788999999732 12333 34778899999877655544 47999999999
Q ss_pred HHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecCchhhhccCEEEEEeCcEEEEecChhHHhh
Q 000452 1394 CLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFS--DCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLE 1471 (1495)
Q Consensus 1394 ~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~--~~TVI~IAHRl~ti~~~DrIlVL~~G~ivE~gsp~~Ll~ 1471 (1495)
+|||||+.+|++|||||||++||..+...+.+.|++..+ ++|||+++|+++.+..||+|++|++|++++.|+++++++
T Consensus 153 ~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (282)
T PRK13640 153 AIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFS 232 (282)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999999998753 789999999999998899999999999999999999875
Q ss_pred c
Q 000452 1472 N 1472 (1495)
Q Consensus 1472 ~ 1472 (1495)
+
T Consensus 233 ~ 233 (282)
T PRK13640 233 K 233 (282)
T ss_pred C
Confidence 3
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-39 Score=379.45 Aligned_cols=223 Identities=22% Similarity=0.349 Sum_probs=189.5
Q ss_pred eEEEeeeeEEeCCC-----------CCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCC
Q 000452 1247 KIDLRDLQVRYAPH-----------MPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISL 1315 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~-----------~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~ 1315 (1495)
-++++|++++|... ...+++||||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.|+.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 59999999999631 2469999999999999999999999999999999999999999999999999998
Q ss_pred CCHHH---HhcccEEEcccC--cCC-CCcHHHhcCC----C-CCCCH----HHHHHHHHHcCCcHHHHhccCCccccccc
Q 000452 1316 IGLHD---LRTRLSIIPQDP--VMF-EGTVRSNVDP----L-EEYTD----EQIWEALDKCQLGDEVRKKEGKLDSKVTE 1380 (1495)
Q Consensus 1316 i~l~~---LR~~isiIpQdp--~LF-~GTIR~NLdp----~-~~~sd----~ei~~aL~~~~L~~~v~~lp~gLdt~v~e 1380 (1495)
++.++ +|++++||||+| .|| ..||++|+.. . ...+. +.+.++++.+++.+.+ + ..
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~------~----~~ 157 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNL------I----NR 157 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHH------h----cC
Confidence 87544 678999999999 577 4699999851 1 12343 3456778888874321 1 12
Q ss_pred CCCCCCchHHHHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecCchhhhc-cCEEEEEeC
Q 000452 1381 NGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFS--DCTVITIAHRITSVID-SDMVLLLSH 1457 (1495)
Q Consensus 1381 ~G~nLS~GQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~ 1457 (1495)
....||||||||++|||||+.+|++||+||||++||..+...|.+.|++..+ +.|+|+|||+++.+.. ||||+||++
T Consensus 158 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~ 237 (331)
T PRK15079 158 YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYL 237 (331)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 3457999999999999999999999999999999999999999999987643 7899999999999976 999999999
Q ss_pred cEEEEecChhHHhhcCCChHHH
Q 000452 1458 GLIEEYDSPRKLLENKSSSFSQ 1479 (1495)
Q Consensus 1458 G~ivE~gsp~~Ll~~~~s~f~~ 1479 (1495)
|+|+|.|+++++++++...|.+
T Consensus 238 G~ive~g~~~~i~~~~~~py~~ 259 (331)
T PRK15079 238 GHAVELGTYDEVYHNPLHPYTK 259 (331)
T ss_pred CEEEEEcCHHHHHcCCCCHHHH
Confidence 9999999999999876555554
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-40 Score=342.89 Aligned_cols=205 Identities=30% Similarity=0.443 Sum_probs=177.7
Q ss_pred ccEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCC-----cEEEEcCe--------
Q 000452 616 TAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKIS-----GTLKLCGT-------- 682 (1495)
Q Consensus 616 ~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~-----G~v~~~g~-------- 682 (1495)
..++++|+++.|. ++.+|+|||++|++++++|++||+||||||||+++....+..+ |+|.++|+
T Consensus 6 ~~~~~~~l~~yYg---~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d 82 (253)
T COG1117 6 PAIEVRDLNLYYG---DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD 82 (253)
T ss_pred ceeEecceeEEEC---chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCC
Confidence 4689999999996 4679999999999999999999999999999999999987765 89999884
Q ss_pred -------EEEEccCCcccCccHHHHHhcCCCC---C----HHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHH
Q 000452 683 -------KAYVAQSPWIQSGKIEDNILFGKEM---D----RERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQK 748 (1495)
Q Consensus 683 -------~ayv~Q~~~l~~~ti~enI~fg~~~---~----~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 748 (1495)
+|.|+|.|.-|+.||+|||.+|... . ++..++.++..+|-+..+ | .+.+.+..|||||+
T Consensus 83 ~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVK-----D--rL~~sa~~LSGGQQ 155 (253)
T COG1117 83 VVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVK-----D--RLHKSALGLSGGQQ 155 (253)
T ss_pred HHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhH-----H--HhhCCccCCChhHH
Confidence 5999999999999999999999542 1 234555566666644332 1 24578889999999
Q ss_pred HHHHHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEecCCCcccc-CCEEEEEeCCEEEEecChHH
Q 000452 749 QRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYTD 827 (1495)
Q Consensus 749 qRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 827 (1495)
||++||||+.-+|+|+|||||||||||.+..+| ++++..+.++-|+|+|||+++...+ +|+...+.+|++++.|+.++
T Consensus 156 QRLcIARalAv~PeVlLmDEPtSALDPIsT~kI-EeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~ 234 (253)
T COG1117 156 QRLCIARALAVKPEVLLMDEPTSALDPISTLKI-EELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDK 234 (253)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCchhHHHH-HHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHh
Confidence 999999999999999999999999999988888 6788888888999999999999876 99999999999999999999
Q ss_pred HHhc
Q 000452 828 VINS 831 (1495)
Q Consensus 828 l~~~ 831 (1495)
+..+
T Consensus 235 iF~~ 238 (253)
T COG1117 235 IFTN 238 (253)
T ss_pred hhcC
Confidence 8765
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-39 Score=369.14 Aligned_cols=217 Identities=29% Similarity=0.425 Sum_probs=188.2
Q ss_pred cceEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCC-------
Q 000452 1245 HGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIG------- 1317 (1495)
Q Consensus 1245 ~g~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~------- 1317 (1495)
.+.++++||+++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..+.
T Consensus 3 ~~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 3 ENKLNVIDLHKRYGE--HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred CccEEEeeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence 467999999999964 35999999999999999999999999999999999999999999999999986531
Q ss_pred ------HHHHhcccEEEcccCcCCCC-cHHHhcCCC----CCCC----HHHHHHHHHHcCCcHHHHhccCCcccccccCC
Q 000452 1318 ------LHDLRTRLSIIPQDPVMFEG-TVRSNVDPL----EEYT----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENG 1382 (1495)
Q Consensus 1318 ------l~~LR~~isiIpQdp~LF~G-TIR~NLdp~----~~~s----d~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G 1382 (1495)
...+|++++|+||+|.+|.+ |+++|+... .... ++++.+++++.++.+... ....
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~----------~~~~ 150 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQ----------GKYP 150 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhh----------hCCc
Confidence 35678899999999999975 999999631 1112 345778888888865531 2234
Q ss_pred CCCCchHHHHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-cCEEEEEeCcEE
Q 000452 1383 ENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGLI 1460 (1495)
Q Consensus 1383 ~nLS~GQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~i 1460 (1495)
..||+|||||++|||||+++|++|||||||++||+.+.+.+.+.|++.. .++|||+|+|+++.+.. ||||++|++|++
T Consensus 151 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i 230 (257)
T PRK10619 151 VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 230 (257)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 6799999999999999999999999999999999999999999998864 37999999999999986 999999999999
Q ss_pred EEecChhHHhhcC
Q 000452 1461 EEYDSPRKLLENK 1473 (1495)
Q Consensus 1461 vE~gsp~~Ll~~~ 1473 (1495)
++.|+++++++.+
T Consensus 231 ~~~~~~~~~~~~~ 243 (257)
T PRK10619 231 EEEGAPEQLFGNP 243 (257)
T ss_pred EEeCCHHHhhhCc
Confidence 9999999998654
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-39 Score=378.22 Aligned_cols=224 Identities=24% Similarity=0.379 Sum_probs=190.0
Q ss_pred eEEEeeeeEEeCCC--------CCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCH
Q 000452 1247 KIDLRDLQVRYAPH--------MPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGL 1318 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~--------~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l 1318 (1495)
-|+++|++++|+.. ...+|+||||+|++||++||||+||||||||+++|.|+++|++|+|.+||.|+.+++.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 48999999999631 2469999999999999999999999999999999999999999999999999998874
Q ss_pred H---HHhcccEEEcccCc--CCCC-cHHHhcC-CC---CCCC----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCC
Q 000452 1319 H---DLRTRLSIIPQDPV--MFEG-TVRSNVD-PL---EEYT----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGEN 1384 (1495)
Q Consensus 1319 ~---~LR~~isiIpQdp~--LF~G-TIR~NLd-p~---~~~s----d~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~n 1384 (1495)
. .+|+++++|||||. |+.. ||.+|+. +. ...+ .+++.++|+++++.+. .++.. ...
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~------~~~~~----p~~ 154 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPE------HYDRY----PHM 154 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChH------HhcCC----Ccc
Confidence 3 57889999999993 5554 8988874 21 1122 3457888999988632 22322 357
Q ss_pred CCchHHHHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecCchhhhc-cCEEEEEeCcEEE
Q 000452 1385 WSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGLIE 1461 (1495)
Q Consensus 1385 LS~GQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~iv 1461 (1495)
||||||||++|||||+.+|+|||+||||++||..+...|.+.|++..+ ++|+|+|||+++.+.. ||+|+||++|+|+
T Consensus 155 LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~iv 234 (327)
T PRK11308 155 FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCV 234 (327)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999988653 7899999999999975 9999999999999
Q ss_pred EecChhHHhhcCCChHHHH
Q 000452 1462 EYDSPRKLLENKSSSFSQL 1480 (1495)
Q Consensus 1462 E~gsp~~Ll~~~~s~f~~l 1480 (1495)
|.|+++++++++...|.+.
T Consensus 235 e~g~~~~~~~~p~hpyt~~ 253 (327)
T PRK11308 235 EKGTKEQIFNNPRHPYTQA 253 (327)
T ss_pred EECCHHHHhcCCCCHHHHH
Confidence 9999999998765555543
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=373.31 Aligned_cols=202 Identities=32% Similarity=0.435 Sum_probs=178.0
Q ss_pred cEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe-----------EEE
Q 000452 617 AIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-----------KAY 685 (1495)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~-----------~ay 685 (1495)
.|+++|++++|.. ..+++|+||+|++||+++++|||||||||||++|+|+.+|++|+|.++|+ +|+
T Consensus 3 ~i~l~~v~K~yg~---~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iam 79 (338)
T COG3839 3 ELELKNVRKSFGS---FEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAM 79 (338)
T ss_pred EEEEeeeEEEcCC---ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEE
Confidence 5899999999962 12999999999999999999999999999999999999999999999984 599
Q ss_pred EccCCcccC-ccHHHHHhcCCCCC-------HHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHHHHHh
Q 000452 686 VAQSPWIQS-GKIEDNILFGKEMD-------RERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARAL 757 (1495)
Q Consensus 686 v~Q~~~l~~-~ti~enI~fg~~~~-------~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl 757 (1495)
|+|+.-+++ .||+|||.||.... +++.+++.+.+++++.++ +++.+||||||||||||||+
T Consensus 80 VFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~-----------r~P~~LSGGQrQRVAlaRAl 148 (338)
T COG3839 80 VFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLN-----------RKPLQLSGGQRQRVALARAL 148 (338)
T ss_pred EeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHh-----------cCcccCChhhHHHHHHHHHH
Confidence 999998875 59999999997542 467778888888887775 67789999999999999999
Q ss_pred ccCCCEeEecCcCCccCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCccc-cCCEEEEEeCCEEEEecChHHHHhcC
Q 000452 758 YQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL-NSKTVLYVTHQVEFLP-AADLVLVIKDGKITQAGKYTDVINSG 832 (1495)
Q Consensus 758 ~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvIlvTH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 832 (1495)
.++|+++|||||+|+||++....+-.++.+... -+.|+|+||||..++- .+|+|.+|++|+|.+.|++.|+.+..
T Consensus 149 Vr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P 225 (338)
T COG3839 149 VRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERP 225 (338)
T ss_pred hcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCc
Confidence 999999999999999999998888766544222 2789999999987765 59999999999999999999998654
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-39 Score=370.23 Aligned_cols=222 Identities=26% Similarity=0.416 Sum_probs=189.9
Q ss_pred eEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccC-----CccEEEEcCEeCCCC--CHH
Q 000452 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEP-----AAGQILIDGIDISLI--GLH 1319 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep-----~~G~I~IDG~dI~~i--~l~ 1319 (1495)
.|+++|++++|+. .++|+|+||+|++||++||+|++|||||||+++|.|+++| ++|+|.+||.++... +..
T Consensus 12 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 89 (258)
T PRK14268 12 QIKVENLNLWYGE--KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVV 89 (258)
T ss_pred eEEEeeeEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHH
Confidence 6999999999963 3599999999999999999999999999999999999985 799999999998753 345
Q ss_pred HHhcccEEEcccCcCCCCcHHHhcCCC---CCCC----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHH
Q 000452 1320 DLRTRLSIIPQDPVMFEGTVRSNVDPL---EEYT----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQL 1392 (1495)
Q Consensus 1320 ~LR~~isiIpQdp~LF~GTIR~NLdp~---~~~s----d~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQr 1392 (1495)
.+|++++|+||+|.+|..|+++|+... ...+ ++++.++++.+++.+.+. ..++ ....+||+|||||
T Consensus 90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---~~~~----~~~~~LSgG~~qr 162 (258)
T PRK14268 90 ELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETS---DRLK----SPALSLSGGQQQR 162 (258)
T ss_pred HHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchh---hhhc----CChhhCCHHHHHH
Confidence 678899999999999999999999631 1222 234677888888754321 1233 3456799999999
Q ss_pred HHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-cCEEEEEeCcEEEEecChhHHhh
Q 000452 1393 VCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLE 1471 (1495)
Q Consensus 1393 l~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~Ll~ 1471 (1495)
++|||||+++|+||+|||||++||.++...+.+.|++..+++|||+|+|+++.+.+ ||+|++|++|++++.|+|+++.+
T Consensus 163 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 242 (258)
T PRK14268 163 LCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFH 242 (258)
T ss_pred HHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999999987668999999999999865 99999999999999999999987
Q ss_pred cCCChH
Q 000452 1472 NKSSSF 1477 (1495)
Q Consensus 1472 ~~~s~f 1477 (1495)
++...+
T Consensus 243 ~~~~~~ 248 (258)
T PRK14268 243 NPREKS 248 (258)
T ss_pred CCCCHH
Confidence 654433
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=363.65 Aligned_cols=202 Identities=29% Similarity=0.410 Sum_probs=175.5
Q ss_pred EEEeeeeEEeCCCC--CcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHH----H
Q 000452 1248 IDLRDLQVRYAPHM--PFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHD----L 1321 (1495)
Q Consensus 1248 I~f~nv~~~Y~~~~--~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~----L 1321 (1495)
|+++||+++|+++. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+... .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 57899999997531 46999999999999999999999999999999999999999999999999998876433 4
Q ss_pred hcccEEEcccCcCCCC-cHHHhcCCC---CCC----CHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHH
Q 000452 1322 RTRLSIIPQDPVMFEG-TVRSNVDPL---EEY----TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLV 1393 (1495)
Q Consensus 1322 R~~isiIpQdp~LF~G-TIR~NLdp~---~~~----sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl 1393 (1495)
|++++|+||+|.+|.+ |+++|+... ... .++++.++++..++.+...+. ..+||+|||||+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv 149 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHY-----------PSELSGGQQQRV 149 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcC-----------hhhcCHHHHHHH
Confidence 6789999999999987 999999632 111 234677888888876554333 357999999999
Q ss_pred HHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecCchhhhccCEEEEEeCcEE
Q 000452 1394 CLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFS--DCTVITIAHRITSVIDSDMVLLLSHGLI 1460 (1495)
Q Consensus 1394 ~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~--~~TVI~IAHRl~ti~~~DrIlVL~~G~i 1460 (1495)
+|||||+++|+||||||||++||+.+...+.+.|++..+ ++|||+|+|+++.+..||+|++|++|++
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 999999999999999999999999999999999998754 7899999999999888999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-39 Score=361.40 Aligned_cols=205 Identities=24% Similarity=0.385 Sum_probs=178.7
Q ss_pred EEEeeeeEEeCCCC--CcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhccc
Q 000452 1248 IDLRDLQVRYAPHM--PFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRL 1325 (1495)
Q Consensus 1248 I~f~nv~~~Y~~~~--~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i 1325 (1495)
|+++||+++|+... +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ...++|+++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 68999999996532 269999999999999999999999999999999999999999999999999976 356788999
Q ss_pred EEEcccCcCCCC-cHHHhcCCC---CCCC----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHH
Q 000452 1326 SIIPQDPVMFEG-TVRSNVDPL---EEYT----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGR 1397 (1495)
Q Consensus 1326 siIpQdp~LF~G-TIR~NLdp~---~~~s----d~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LAR 1397 (1495)
+|+||+|.+|.+ |+++|+... ...+ ++++.++++..++.+...+ ...+||+|||||++|||
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~lar 149 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDR-----------RVGGFSTGMRQKVAIAR 149 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhh-----------hhhhcCHHHHHHHHHHH
Confidence 999999999986 999998521 1122 3467788888888655443 34579999999999999
Q ss_pred HHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-cCEEEEEeCcEEEEec
Q 000452 1398 VLLKRRKILMLDEATASVDTATDNLIQQSLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGLIEEYD 1464 (1495)
Q Consensus 1398 ALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~g 1464 (1495)
|++++|+||||||||++||+.+...+.+.|++.. +++|+|+|||+++.+.+ ||+|++|++|++++.|
T Consensus 150 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 150 ALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 9999999999999999999999999999998864 47899999999998865 9999999999998865
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-39 Score=367.33 Aligned_cols=223 Identities=25% Similarity=0.445 Sum_probs=191.3
Q ss_pred eEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccC-----CccEEEEcCEeCCCC--CHH
Q 000452 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEP-----AAGQILIDGIDISLI--GLH 1319 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep-----~~G~I~IDG~dI~~i--~l~ 1319 (1495)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++... +..
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~ 80 (250)
T PRK14262 3 IIEIENFSAYYGE--KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVT 80 (250)
T ss_pred eEEEEeeEEEeCC--ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHH
Confidence 4899999999963 4599999999999999999999999999999999999984 899999999998753 345
Q ss_pred HHhcccEEEcccCcCCCCcHHHhcCCC----CCC----CHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHH
Q 000452 1320 DLRTRLSIIPQDPVMFEGTVRSNVDPL----EEY----TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQ 1391 (1495)
Q Consensus 1320 ~LR~~isiIpQdp~LF~GTIR~NLdp~----~~~----sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQ 1391 (1495)
.+|++++|+||+|.+|..|+++|+... +.. .++++.++++..++.+.+.. .......+||+||||
T Consensus 81 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~Gq~q 153 (250)
T PRK14262 81 EYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKS-------ELNKPGTRLSGGQQQ 153 (250)
T ss_pred HhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHH-------HHhCChhhcCHHHHH
Confidence 678899999999999999999999631 111 23456778888888654432 234456789999999
Q ss_pred HHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-cCEEEEEeCcEEEEecChhHHh
Q 000452 1392 LVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLL 1470 (1495)
Q Consensus 1392 rl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~Ll 1470 (1495)
|++||||++++|+||+|||||++||..+...+.+.|++..+++|+|+|+|+++.+.. ||+|++|++|++++.|+++++.
T Consensus 154 r~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14262 154 RLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIV 233 (250)
T ss_pred HHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 999999999999999999999999999999999999988778999999999998765 9999999999999999999998
Q ss_pred hcCCChHH
Q 000452 1471 ENKSSSFS 1478 (1495)
Q Consensus 1471 ~~~~s~f~ 1478 (1495)
+++...|.
T Consensus 234 ~~~~~~~~ 241 (250)
T PRK14262 234 ERPKNKLT 241 (250)
T ss_pred hCCCChHH
Confidence 65433344
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-39 Score=383.00 Aligned_cols=218 Identities=22% Similarity=0.399 Sum_probs=192.2
Q ss_pred cceEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCc--cEEEEcCEeCCCCCHHHHh
Q 000452 1245 HGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAA--GQILIDGIDISLIGLHDLR 1322 (1495)
Q Consensus 1245 ~g~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~--G~I~IDG~dI~~i~l~~LR 1322 (1495)
.|.|+++||+++|.. ..+|+|+||+|++||.++|+|+||||||||+++|.|+.+|++ |+|.+||.++...+. .+
T Consensus 3 ~~~l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~ 78 (362)
T TIGR03258 3 CGGIRIDHLRVAYGA--NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HK 78 (362)
T ss_pred ceEEEEEEEEEEECC--eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HH
Confidence 478999999999974 359999999999999999999999999999999999999999 999999999987665 35
Q ss_pred cccEEEcccCcCCCC-cHHHhcCC-CC--CCC----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHH
Q 000452 1323 TRLSIIPQDPVMFEG-TVRSNVDP-LE--EYT----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVC 1394 (1495)
Q Consensus 1323 ~~isiIpQdp~LF~G-TIR~NLdp-~~--~~s----d~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~ 1394 (1495)
+++++++|++.+|.. |+++|+.. .. ..+ ++++.++++.++|.+...+.| .+||||||||++
T Consensus 79 r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRva 147 (362)
T TIGR03258 79 RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLP-----------AQLSGGMQQRIA 147 (362)
T ss_pred CCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCCh-----------hhCCHHHHHHHH
Confidence 789999999999977 99999963 21 223 245777889988887766555 368999999999
Q ss_pred HHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcC---CcEEEEEecCchhhhc-cCEEEEEeCcEEEEecChhHHh
Q 000452 1395 LGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFS---DCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLL 1470 (1495)
Q Consensus 1395 LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~---~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~Ll 1470 (1495)
|||||+++|++|+||||||+||+.+...+.+.|++..+ +.|+|+|||+++.+.. ||+|+||++|++++.|+|+++.
T Consensus 148 LARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~ 227 (362)
T TIGR03258 148 IARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALY 227 (362)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999987654 6899999999998765 9999999999999999999999
Q ss_pred hcCCChH
Q 000452 1471 ENKSSSF 1477 (1495)
Q Consensus 1471 ~~~~s~f 1477 (1495)
+++...|
T Consensus 228 ~~p~~~~ 234 (362)
T TIGR03258 228 DAPADGF 234 (362)
T ss_pred hCcCcHH
Confidence 8776555
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-39 Score=361.24 Aligned_cols=208 Identities=25% Similarity=0.375 Sum_probs=182.0
Q ss_pred EEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccEE
Q 000452 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSI 1327 (1495)
Q Consensus 1248 I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~isi 1327 (1495)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ .++|++++|
T Consensus 1 i~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (220)
T cd03265 1 IEVENLVKKYGD--FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREP-REVRRRIGI 77 (220)
T ss_pred CEEEEEEEEECC--EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcCh-HHHhhcEEE
Confidence 578999999964 35999999999999999999999999999999999999999999999999987633 567889999
Q ss_pred EcccCcCCCC-cHHHhcCCC---CCC----CHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHH
Q 000452 1328 IPQDPVMFEG-TVRSNVDPL---EEY----TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVL 1399 (1495)
Q Consensus 1328 IpQdp~LF~G-TIR~NLdp~---~~~----sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAL 1399 (1495)
+||+|.+|.+ |+++|+... ... .++++.++++.+++.+...+.| ..||+|||||++||||+
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qr~~la~al 146 (220)
T cd03265 78 VFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLV-----------KTYSGGMRRRLEIARSL 146 (220)
T ss_pred ecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCh-----------hhCCHHHHHHHHHHHHH
Confidence 9999999876 999999531 111 2446788899998876554433 46999999999999999
Q ss_pred ccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecCchhhhc-cCEEEEEeCcEEEEecChhHH
Q 000452 1400 LKRRKILMLDEATASVDTATDNLIQQSLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKL 1469 (1495)
Q Consensus 1400 Lr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~L 1469 (1495)
+.+|++|+|||||++||+++...+.+.|++..+ ++|||+|+|+++.+.. ||+|++|++|++++.|+++++
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 147 VHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 999999999999999999999999999988653 6899999999999875 999999999999999998764
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=375.88 Aligned_cols=203 Identities=33% Similarity=0.443 Sum_probs=179.3
Q ss_pred ccEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe-----------EE
Q 000452 616 TAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-----------KA 684 (1495)
Q Consensus 616 ~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~-----------~a 684 (1495)
..++++|++++|. +.++++|+||+|++||+++++|||||||||||++|+|+..|++|+|.++|+ ++
T Consensus 4 ~~l~i~~v~k~yg---~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig 80 (352)
T COG3842 4 PALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIG 80 (352)
T ss_pred ceEEEEeeeeecC---CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccc
Confidence 4699999999996 468999999999999999999999999999999999999999999999995 48
Q ss_pred EEccCCccc-CccHHHHHhcCCCC----C-H---HHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHHHH
Q 000452 685 YVAQSPWIQ-SGKIEDNILFGKEM----D-R---ERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIAR 755 (1495)
Q Consensus 685 yv~Q~~~l~-~~ti~enI~fg~~~----~-~---~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LAR 755 (1495)
+|+|+.-|| +.||+|||.||... . + +++++.++..+|.+.. .+++..|||||||||||||
T Consensus 81 ~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~-----------~R~p~qLSGGQqQRVALAR 149 (352)
T COG3842 81 MVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFA-----------DRKPHQLSGGQQQRVALAR 149 (352)
T ss_pred eeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhh-----------hhChhhhChHHHHHHHHHH
Confidence 999999887 56999999999762 2 2 3667777777776533 3788999999999999999
Q ss_pred HhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCc-cccCCEEEEEeCCEEEEecChHHHHhcC
Q 000452 756 ALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL-NSKTVLYVTHQVEF-LPAADLVLVIKDGKITQAGKYTDVINSG 832 (1495)
Q Consensus 756 Al~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvIlvTH~~~~-l~~~d~i~~l~~G~i~~~g~~~~l~~~~ 832 (1495)
||..+|+++|||||+||||.+.++++-.++..... .|.|.|+||||.+. +..+|+|.+|++|+|.+.|+++|+....
T Consensus 150 AL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P 228 (352)
T COG3842 150 ALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERP 228 (352)
T ss_pred HhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCc
Confidence 99999999999999999999999998777655443 38999999999987 5669999999999999999999998654
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-39 Score=367.00 Aligned_cols=219 Identities=28% Similarity=0.434 Sum_probs=188.2
Q ss_pred eEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccc--C---CccEEEEcCEeCCCC--CHH
Q 000452 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVE--P---AAGQILIDGIDISLI--GLH 1319 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~e--p---~~G~I~IDG~dI~~i--~l~ 1319 (1495)
.++++|++++|.. .++|+|+||+|++||++||+|+||||||||+++|.|+.+ | ++|+|.+||.++... +..
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14239 5 ILQVSDLSVYYNK--KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTV 82 (252)
T ss_pred eEEEEeeEEEECC--eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchH
Confidence 5899999999964 359999999999999999999999999999999999953 6 499999999999753 345
Q ss_pred HHhcccEEEcccCcCCCCcHHHhcCCC----CC----CCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHH
Q 000452 1320 DLRTRLSIIPQDPVMFEGTVRSNVDPL----EE----YTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQ 1391 (1495)
Q Consensus 1320 ~LR~~isiIpQdp~LF~GTIR~NLdp~----~~----~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQ 1391 (1495)
.+|++++|+||+|.+|+.|+++|+... +. ..++++.++++.+++.+.+.. .......+||+||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~q 155 (252)
T PRK14239 83 DLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKD-------RLHDSALGLSGGQQQ 155 (252)
T ss_pred hhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHH-------HHhcCcccCCHHHHH
Confidence 678899999999999999999998621 11 123456778888887654432 223455689999999
Q ss_pred HHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-cCEEEEEeCcEEEEecChhHHh
Q 000452 1392 LVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLL 1470 (1495)
Q Consensus 1392 rl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~Ll 1470 (1495)
|++|||||+++|+||||||||++||.++...+.+.|++..+++|||+|+|+++.+.. ||+|++|++|++++.|++++++
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T PRK14239 156 RVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMF 235 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987667999999999998865 9999999999999999999998
Q ss_pred hcCC
Q 000452 1471 ENKS 1474 (1495)
Q Consensus 1471 ~~~~ 1474 (1495)
+++.
T Consensus 236 ~~~~ 239 (252)
T PRK14239 236 MNPK 239 (252)
T ss_pred hCCC
Confidence 7643
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-39 Score=366.91 Aligned_cols=222 Identities=25% Similarity=0.443 Sum_probs=192.7
Q ss_pred eEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccc-----CCccEEEEcCEeCCC--CCHH
Q 000452 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVE-----PAAGQILIDGIDISL--IGLH 1319 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~e-----p~~G~I~IDG~dI~~--i~l~ 1319 (1495)
.++++||+++|++ .++|+|+||+|++||.+||+|++|||||||+++|+|+.+ |++|+|.+||.+++. .+..
T Consensus 3 ~l~~~~v~~~~~~--~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~ 80 (250)
T PRK14266 3 RIEVENLNTYFDD--AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVV 80 (250)
T ss_pred EEEEEeEEEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHH
Confidence 3789999999964 359999999999999999999999999999999999975 389999999999875 3467
Q ss_pred HHhcccEEEcccCcCCCCcHHHhcCCC-C--C-CC----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHH
Q 000452 1320 DLRTRLSIIPQDPVMFEGTVRSNVDPL-E--E-YT----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQ 1391 (1495)
Q Consensus 1320 ~LR~~isiIpQdp~LF~GTIR~NLdp~-~--~-~s----d~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQ 1391 (1495)
++|++++|+||+|.+|.+|+++|+... . . .+ ++++.++++.+++.+.+... + ...+.+||+||||
T Consensus 81 ~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~---~----~~~~~~LS~Gq~q 153 (250)
T PRK14266 81 ELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDK---L----DKSALGLSGGQQQ 153 (250)
T ss_pred HHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHH---H----hCCcccCCHHHHH
Confidence 889999999999999999999999632 1 1 12 24567789999997765432 2 3456789999999
Q ss_pred HHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-cCEEEEEeCcEEEEecChhHHh
Q 000452 1392 LVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLL 1470 (1495)
Q Consensus 1392 rl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~Ll 1470 (1495)
|+||||||+++|+||+|||||++||..+...+.+.|++..+++|||+++|+++.+.. ||+|++|++|++++.|+++++.
T Consensus 154 rv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14266 154 RLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIF 233 (250)
T ss_pred HHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHHH
Confidence 999999999999999999999999999999999999988778999999999998876 8999999999999999999998
Q ss_pred hcCCChH
Q 000452 1471 ENKSSSF 1477 (1495)
Q Consensus 1471 ~~~~s~f 1477 (1495)
+.+...+
T Consensus 234 ~~~~~~~ 240 (250)
T PRK14266 234 INPKDKR 240 (250)
T ss_pred hCCCChH
Confidence 7655544
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-39 Score=369.05 Aligned_cols=223 Identities=23% Similarity=0.353 Sum_probs=190.2
Q ss_pred eEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHH---HHhc
Q 000452 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLH---DLRT 1323 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~---~LR~ 1323 (1495)
.|+++|++++|.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.. .+|+
T Consensus 7 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 84 (269)
T PRK11831 7 LVDMRGVSFTRGN--RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRK 84 (269)
T ss_pred eEEEeCeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhh
Confidence 5999999999963 3599999999999999999999999999999999999999999999999999877643 4578
Q ss_pred ccEEEcccCcCCCC-cHHHhcCC----CCCCCH----HHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHH
Q 000452 1324 RLSIIPQDPVMFEG-TVRSNVDP----LEEYTD----EQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVC 1394 (1495)
Q Consensus 1324 ~isiIpQdp~LF~G-TIR~NLdp----~~~~sd----~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~ 1394 (1495)
+++|+||++.+|.+ |+++|+.. ....+. +++.++++.+++.+..... ..+||||||||++
T Consensus 85 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LSgGq~qrv~ 153 (269)
T PRK11831 85 RMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLM-----------PSELSGGMARRAA 153 (269)
T ss_pred cEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCC-----------hhhCCHHHHHHHH
Confidence 89999999999987 99999962 111222 3466678888776543332 3479999999999
Q ss_pred HHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecCchhhhc-cCEEEEEeCcEEEEecChhHHhh
Q 000452 1395 LGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLE 1471 (1495)
Q Consensus 1395 LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~Ll~ 1471 (1495)
|||||+++|++|||||||++||+.+...+.+.|++..+ ++|||+|+|+++.+.. ||+|++|++|++++.|+++++++
T Consensus 154 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 233 (269)
T PRK11831 154 LARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQA 233 (269)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999998643 7899999999998876 99999999999999999999987
Q ss_pred cCCChHHHHHH
Q 000452 1472 NKSSSFSQLVA 1482 (1495)
Q Consensus 1472 ~~~s~f~~lv~ 1482 (1495)
+++.....++.
T Consensus 234 ~~~~~~~~~~~ 244 (269)
T PRK11831 234 NPDPRVRQFLD 244 (269)
T ss_pred CCcHHHHHHHH
Confidence 54444455544
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-39 Score=365.97 Aligned_cols=222 Identities=25% Similarity=0.455 Sum_probs=190.8
Q ss_pred cceEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccc--C---CccEEEEcCEeCCCC--C
Q 000452 1245 HGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVE--P---AAGQILIDGIDISLI--G 1317 (1495)
Q Consensus 1245 ~g~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~e--p---~~G~I~IDG~dI~~i--~ 1317 (1495)
+|.|+++|++++|+. .++|+|+||+|++||.+||+|++|||||||+++|.|+++ | ++|+|.+||.++... .
T Consensus 2 ~~~l~~~nl~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~ 79 (252)
T PRK14256 2 NNKVKLEQLNVHFGK--NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79 (252)
T ss_pred CcEEEEEEEEEEeCC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCC
Confidence 467999999999974 359999999999999999999999999999999999986 4 689999999999754 4
Q ss_pred HHHHhcccEEEcccCcCCC-CcHHHhcCCC----CCCC----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCch
Q 000452 1318 LHDLRTRLSIIPQDPVMFE-GTVRSNVDPL----EEYT----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMG 1388 (1495)
Q Consensus 1318 l~~LR~~isiIpQdp~LF~-GTIR~NLdp~----~~~s----d~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~G 1388 (1495)
...+|++++|+||++.+|. .|+++|+... +..+ ++++.++++.+++.+.+..+ ....+.+||+|
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~~~LS~G 152 (252)
T PRK14256 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDR-------LKSNAMELSGG 152 (252)
T ss_pred hHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHH-------hhCCcCcCCHH
Confidence 5578899999999999998 5999999631 1112 34567788888886544322 22346689999
Q ss_pred HHHHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-cCEEEEEeCcEEEEecChh
Q 000452 1389 QRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPR 1467 (1495)
Q Consensus 1389 QrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~ 1467 (1495)
||||++||||++++|++|||||||++||..+...+.+.|++..++.|||++||+++.+.. ||+|++|++|++++.|+++
T Consensus 153 ~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 232 (252)
T PRK14256 153 QQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETK 232 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999998778899999999999865 9999999999999999999
Q ss_pred HHhhcCCC
Q 000452 1468 KLLENKSS 1475 (1495)
Q Consensus 1468 ~Ll~~~~s 1475 (1495)
++..++..
T Consensus 233 ~~~~~~~~ 240 (252)
T PRK14256 233 KIFTTPEK 240 (252)
T ss_pred HHHhCCCc
Confidence 99866543
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-39 Score=367.50 Aligned_cols=214 Identities=26% Similarity=0.423 Sum_probs=186.3
Q ss_pred EEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCC----------
Q 000452 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIG---------- 1317 (1495)
Q Consensus 1248 I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~---------- 1317 (1495)
|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++
T Consensus 1 i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 78 (252)
T TIGR03005 1 VRFSDVTKRFGI--LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPAD 78 (252)
T ss_pred CEEEEEEEEeCC--eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccc
Confidence 579999999964 35999999999999999999999999999999999999999999999999997653
Q ss_pred ---HHHHhcccEEEcccCcCCC-CcHHHhcCCC----CCC----CHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCC
Q 000452 1318 ---LHDLRTRLSIIPQDPVMFE-GTVRSNVDPL----EEY----TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENW 1385 (1495)
Q Consensus 1318 ---l~~LR~~isiIpQdp~LF~-GTIR~NLdp~----~~~----sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nL 1385 (1495)
...+|++++++||++.+|. .|+++|+... ... .++++.++++..++.+...+. ...|
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~L 147 (252)
T TIGR03005 79 EKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHM-----------PAQL 147 (252)
T ss_pred hhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcC-----------hhhc
Confidence 2467889999999999885 7999999631 111 234577888888876655443 3579
Q ss_pred CchHHHHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecCchhhhc-cCEEEEEeCcEEEE
Q 000452 1386 SMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGLIEE 1462 (1495)
Q Consensus 1386 S~GQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE 1462 (1495)
|+|||||++|||||+++|++|||||||++||+.+...+.+.|++..+ ++|+|+|+|+++.+.+ ||++++|++|++++
T Consensus 148 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 227 (252)
T TIGR03005 148 SGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVE 227 (252)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998653 7899999999999864 99999999999999
Q ss_pred ecChhHHhhcCC
Q 000452 1463 YDSPRKLLENKS 1474 (1495)
Q Consensus 1463 ~gsp~~Ll~~~~ 1474 (1495)
.|+++++.+++.
T Consensus 228 ~g~~~~~~~~~~ 239 (252)
T TIGR03005 228 QGKPDEIFRQPK 239 (252)
T ss_pred eCCHHHHhcCCC
Confidence 999999986654
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-38 Score=365.39 Aligned_cols=215 Identities=39% Similarity=0.677 Sum_probs=194.7
Q ss_pred CCcccEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCeEEEEccCCcc
Q 000452 613 SSETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWI 692 (1495)
Q Consensus 613 ~~~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~~ayv~Q~~~l 692 (1495)
+....++++|+++.+ +++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.++|++|++++
T Consensus 35 ~~~~~l~i~nls~~~-----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~i~yv~q~~~l 109 (282)
T cd03291 35 SDDNNLFFSNLCLVG-----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWI 109 (282)
T ss_pred CCCCeEEEEEEEEec-----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEEEEeCcccc
Confidence 344679999999852 469999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccHHHHHhcCCCCCHHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHHHHHhccCCCEeEecCcCCc
Q 000452 693 QSGKIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSA 772 (1495)
Q Consensus 693 ~~~ti~enI~fg~~~~~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~sa 772 (1495)
++.|++||+.++......++.+.++++++.+.++.++.+.++.+++++.+||||||||++||||++.+|+++||||||++
T Consensus 110 ~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~g 189 (282)
T cd03291 110 MPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGY 189 (282)
T ss_pred cccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCcc
Confidence 99999999998765555567778888899888999999988889999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHHHhCCCEEEEEecCCCccccCCEEEEEeCCEEEEecChHHHHhcC
Q 000452 773 VDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVINSG 832 (1495)
Q Consensus 773 LD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~ 832 (1495)
||+.+.+.+.+.++....+++|+|++||+++.+..||++++|++|+++..|+.+++....
T Consensus 190 LD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 249 (282)
T cd03291 190 LDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSLR 249 (282)
T ss_pred CCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHhcc
Confidence 999998888765555555689999999999998889999999999999999999887543
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-39 Score=375.31 Aligned_cols=215 Identities=20% Similarity=0.285 Sum_probs=184.4
Q ss_pred eEEEeeeeEEeCCCC---CcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCC--------
Q 000452 1247 KIDLRDLQVRYAPHM---PFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISL-------- 1315 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~~---~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~-------- 1315 (1495)
.|+++||+++|+... .++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 389999999997543 259999999999999999999999999999999999999999999999987632
Q ss_pred ----------------CCHHHHhcccEEEcccC--cCCCCcHHHhcCCCC---CCC----HHHHHHHHHHcCCc-HHHHh
Q 000452 1316 ----------------IGLHDLRTRLSIIPQDP--VMFEGTVRSNVDPLE---EYT----DEQIWEALDKCQLG-DEVRK 1369 (1495)
Q Consensus 1316 ----------------i~l~~LR~~isiIpQdp--~LF~GTIR~NLdp~~---~~s----d~ei~~aL~~~~L~-~~v~~ 1369 (1495)
.+...+|++++|+||+| .+|..|+++||.... ..+ ++++.++++.++|. +...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~- 160 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQ- 160 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhh-
Confidence 13467889999999987 688899999996321 223 34567888888885 3333
Q ss_pred ccCCcccccccCCCCCCchHHHHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhh-
Q 000452 1370 KEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHF-SDCTVITIAHRITSVI- 1447 (1495)
Q Consensus 1370 lp~gLdt~v~e~G~nLS~GQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f-~~~TVI~IAHRl~ti~- 1447 (1495)
....+||||||||++|||||+.+|+||||||||++||+.+...+.+.|++.. .++|||+|+|+++.+.
T Consensus 161 ----------~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~ 230 (305)
T PRK13651 161 ----------RSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLE 230 (305)
T ss_pred ----------CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHH
Confidence 2345799999999999999999999999999999999999999999998764 4799999999999875
Q ss_pred ccCEEEEEeCcEEEEecChhHHhhc
Q 000452 1448 DSDMVLLLSHGLIEEYDSPRKLLEN 1472 (1495)
Q Consensus 1448 ~~DrIlVL~~G~ivE~gsp~~Ll~~ 1472 (1495)
.||||++|++|++++.|+|+++.++
T Consensus 231 ~adrv~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 231 WTKRTIFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred hCCEEEEEECCEEEEECCHHHHhcC
Confidence 5999999999999999999998764
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-39 Score=367.40 Aligned_cols=220 Identities=24% Similarity=0.420 Sum_probs=188.8
Q ss_pred eEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccc--C---CccEEEEcCEeCCC--CCHH
Q 000452 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVE--P---AAGQILIDGIDISL--IGLH 1319 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~e--p---~~G~I~IDG~dI~~--i~l~ 1319 (1495)
.|+++|++++|+. .++|+|+||+|++||++||+|++|||||||+++|.|+++ | ++|+|.+||.++.. .+..
T Consensus 12 ~l~i~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 89 (259)
T PRK14274 12 VYQINGMNLWYGQ--HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLV 89 (259)
T ss_pred eEEEeeEEEEECC--eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHH
Confidence 5999999999964 359999999999999999999999999999999999987 3 58999999999864 4456
Q ss_pred HHhcccEEEcccCcCCCCcHHHhcCCC----CCCCH----HHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHH
Q 000452 1320 DLRTRLSIIPQDPVMFEGTVRSNVDPL----EEYTD----EQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQ 1391 (1495)
Q Consensus 1320 ~LR~~isiIpQdp~LF~GTIR~NLdp~----~~~sd----~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQ 1391 (1495)
.+|++++|+||+|.+|.+|+++|+... +..++ +++.++++..++.+.+.. .....+.+||+||||
T Consensus 90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~l~~~~~~LS~Gq~q 162 (259)
T PRK14274 90 ELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKD-------RLHTQALSLSGGQQQ 162 (259)
T ss_pred HHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhh-------hhhCCcccCCHHHHH
Confidence 788999999999999999999999532 11222 345667888887654422 123455689999999
Q ss_pred HHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-cCEEEEEeCcEEEEecChhHHh
Q 000452 1392 LVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLL 1470 (1495)
Q Consensus 1392 rl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~Ll 1470 (1495)
|++||||++++|+||+|||||++||+++...+.+.|++..+++|+|+|+|+++.+.. ||+|++|++|++++.|+|++++
T Consensus 163 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 163 RLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMF 242 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999999999999999998778999999999999865 9999999999999999999998
Q ss_pred hcCCC
Q 000452 1471 ENKSS 1475 (1495)
Q Consensus 1471 ~~~~s 1475 (1495)
+++..
T Consensus 243 ~~~~~ 247 (259)
T PRK14274 243 SNPDD 247 (259)
T ss_pred hCCCC
Confidence 66543
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=365.25 Aligned_cols=220 Identities=29% Similarity=0.467 Sum_probs=189.7
Q ss_pred ceEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccC-----CccEEEEcCEeCCC--CCH
Q 000452 1246 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEP-----AAGQILIDGIDISL--IGL 1318 (1495)
Q Consensus 1246 g~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep-----~~G~I~IDG~dI~~--i~l 1318 (1495)
|.|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+.
T Consensus 2 ~~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14240 2 GKISVKDLDLFYGD--FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDV 79 (250)
T ss_pred CeEEEEEEEEEECC--ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence 57999999999964 3599999999999999999999999999999999999863 69999999999875 455
Q ss_pred HHHhcccEEEcccCcCCCCcHHHhcCCCC---CC-----CHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHH
Q 000452 1319 HDLRTRLSIIPQDPVMFEGTVRSNVDPLE---EY-----TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQR 1390 (1495)
Q Consensus 1319 ~~LR~~isiIpQdp~LF~GTIR~NLdp~~---~~-----sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQr 1390 (1495)
..+|++++|+||+|.+|+.|+++|+.... .. .++++.++++.+++.+.+.. .......+||+|||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~G~~ 152 (250)
T PRK14240 80 NQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKD-------RLKKSALGLSGGQQ 152 (250)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHH-------HHhcCCCCCCHHHH
Confidence 67899999999999999999999996321 11 23456777888887654432 22344568999999
Q ss_pred HHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-cCEEEEEeCcEEEEecChhHH
Q 000452 1391 QLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKL 1469 (1495)
Q Consensus 1391 Qrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~L 1469 (1495)
||++|||||+.+|++|+|||||++||+.+...+.+.|++..+++|||+|||+++.+.+ ||+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 232 (250)
T PRK14240 153 QRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDL 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999987668999999999998865 999999999999999999999
Q ss_pred hhcCC
Q 000452 1470 LENKS 1474 (1495)
Q Consensus 1470 l~~~~ 1474 (1495)
..++.
T Consensus 233 ~~~~~ 237 (250)
T PRK14240 233 FTNPK 237 (250)
T ss_pred HhCCC
Confidence 86543
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-39 Score=384.87 Aligned_cols=216 Identities=20% Similarity=0.337 Sum_probs=189.0
Q ss_pred eEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccE
Q 000452 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLS 1326 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~is 1326 (1495)
.|+++|++++|.. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.. +++++
T Consensus 3 ~l~i~~l~~~~~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~--~~~i~ 78 (369)
T PRK11000 3 SVTLRNVTKAYGD--VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA--ERGVG 78 (369)
T ss_pred EEEEEEEEEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHh--HCCEE
Confidence 4899999999964 3599999999999999999999999999999999999999999999999999876653 56899
Q ss_pred EEcccCcCCCC-cHHHhcCCCC---CCC----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHH
Q 000452 1327 IIPQDPVMFEG-TVRSNVDPLE---EYT----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRV 1398 (1495)
Q Consensus 1327 iIpQdp~LF~G-TIR~NLdp~~---~~s----d~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARA 1398 (1495)
|+||++.+|.. |+++|+.... ..+ ++++.++++.+++.+...+.| .+||||||||++||||
T Consensus 79 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~-----------~~LSgGq~QRvaLAra 147 (369)
T PRK11000 79 MVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKP-----------KALSGGQRQRVAIGRT 147 (369)
T ss_pred EEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCCh-----------hhCCHHHHHHHHHHHH
Confidence 99999999975 9999996321 122 345788899998876554443 4699999999999999
Q ss_pred HccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecCchhhhc-cCEEEEEeCcEEEEecChhHHhhcCCC
Q 000452 1399 LLKRRKILMLDEATASVDTATDNLIQQSLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLENKSS 1475 (1495)
Q Consensus 1399 LLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~Ll~~~~s 1475 (1495)
|+++|+||+||||||+||..+...+.+.|++..+ +.|+|+|||+++.+.. ||+|++|++|++++.|+|+++.+++..
T Consensus 148 L~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~p~~ 227 (369)
T PRK11000 148 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPAN 227 (369)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccc
Confidence 9999999999999999999999999999988653 7899999999998765 999999999999999999999877655
Q ss_pred hH
Q 000452 1476 SF 1477 (1495)
Q Consensus 1476 ~f 1477 (1495)
.|
T Consensus 228 ~~ 229 (369)
T PRK11000 228 RF 229 (369)
T ss_pred HH
Confidence 44
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-39 Score=374.33 Aligned_cols=216 Identities=25% Similarity=0.380 Sum_probs=185.3
Q ss_pred eEEEeeeeEEeCCCC---CcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCC----CCHH
Q 000452 1247 KIDLRDLQVRYAPHM---PFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISL----IGLH 1319 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~~---~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~----i~l~ 1319 (1495)
.|+++|++++|+... .++|+||||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.. .+..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLK 81 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 388999999996432 459999999999999999999999999999999999999999999999999863 3566
Q ss_pred HHhcccEEEcccC--cCCCCcHHHhcCCC---CCCCH----HHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHH
Q 000452 1320 DLRTRLSIIPQDP--VMFEGTVRSNVDPL---EEYTD----EQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQR 1390 (1495)
Q Consensus 1320 ~LR~~isiIpQdp--~LF~GTIR~NLdp~---~~~sd----~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQr 1390 (1495)
..|++++|+||+| .+|+.|+++|+... ...++ +.+.++++.++|.+.+. + .....||+|||
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~------~----~~~~~LSgGq~ 151 (290)
T PRK13634 82 PLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELL------A----RSPFELSGGQM 151 (290)
T ss_pred HHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhh------h----CCcccCCHHHH
Confidence 7889999999998 68889999999632 11233 34567788888763321 1 23457999999
Q ss_pred HHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecCchhhh-ccCEEEEEeCcEEEEecChh
Q 000452 1391 QLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFS--DCTVITIAHRITSVI-DSDMVLLLSHGLIEEYDSPR 1467 (1495)
Q Consensus 1391 Qrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~--~~TVI~IAHRl~ti~-~~DrIlVL~~G~ivE~gsp~ 1467 (1495)
||++|||||+.+|+||||||||++||+.+...+.+.|++..+ +.|||+|+|+++.+. .||||++|++|++++.|+++
T Consensus 152 qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~ 231 (290)
T PRK13634 152 RRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPR 231 (290)
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999988753 789999999999986 49999999999999999999
Q ss_pred HHhhc
Q 000452 1468 KLLEN 1472 (1495)
Q Consensus 1468 ~Ll~~ 1472 (1495)
+++++
T Consensus 232 ~~~~~ 236 (290)
T PRK13634 232 EIFAD 236 (290)
T ss_pred HHhcC
Confidence 98754
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-39 Score=371.01 Aligned_cols=215 Identities=25% Similarity=0.419 Sum_probs=188.8
Q ss_pred eEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccE
Q 000452 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLS 1326 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~is 1326 (1495)
.|+++|++++|+...+++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 7 ~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 86 (269)
T PRK13648 7 IIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIG 86 (269)
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhee
Confidence 59999999999754446999999999999999999999999999999999999999999999999999888888999999
Q ss_pred EEcccCc--CCCCcHHHhcCCCC---CCC----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHH
Q 000452 1327 IIPQDPV--MFEGTVRSNVDPLE---EYT----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGR 1397 (1495)
Q Consensus 1327 iIpQdp~--LF~GTIR~NLdp~~---~~s----d~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LAR 1397 (1495)
|+||+|. ++..|+++|+.... ..+ ++++.++++..++.+.... ...+||+|||||++|||
T Consensus 87 ~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~lar 155 (269)
T PRK13648 87 IVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADY-----------EPNALSGGQKQRVAIAG 155 (269)
T ss_pred EEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhC-----------CcccCCHHHHHHHHHHH
Confidence 9999994 44568999985321 112 3456778888887654432 34579999999999999
Q ss_pred HHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecCchhhhccCEEEEEeCcEEEEecChhHHhhc
Q 000452 1398 VLLKRRKILMLDEATASVDTATDNLIQQSLRQHFS--DCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLEN 1472 (1495)
Q Consensus 1398 ALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~--~~TVI~IAHRl~ti~~~DrIlVL~~G~ivE~gsp~~Ll~~ 1472 (1495)
|++.+|++|||||||++||+.+...+.+.|++..+ ++|+|+++|+++.+..||||++|++|++++.|+++++.++
T Consensus 156 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 156 VLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 99999999999999999999999999999998753 7899999999999988999999999999999999998764
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-39 Score=365.32 Aligned_cols=212 Identities=25% Similarity=0.355 Sum_probs=185.9
Q ss_pred eEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHH-hccc
Q 000452 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDL-RTRL 1325 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~L-R~~i 1325 (1495)
-|+++|++++|+. .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++.+.+..+. |.++
T Consensus 2 ~i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (242)
T TIGR03411 2 ILYLEGLSVSFDG--FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGI 79 (242)
T ss_pred eEEEEeeEEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCe
Confidence 3789999999964 359999999999999999999999999999999999999999999999999988876654 5679
Q ss_pred EEEcccCcCCCC-cHHHhcCCCCC------------C---CHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchH
Q 000452 1326 SIIPQDPVMFEG-TVRSNVDPLEE------------Y---TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQ 1389 (1495)
Q Consensus 1326 siIpQdp~LF~G-TIR~NLdp~~~------------~---sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQ 1389 (1495)
+|+||+|.+|.+ |+++|+..... . .++++.++++..++.+.. .....+||+||
T Consensus 80 ~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~Ge 148 (242)
T TIGR03411 80 GRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEA-----------DRLAGLLSHGQ 148 (242)
T ss_pred eEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHH
Confidence 999999999987 99999964211 0 234567777777765432 23345799999
Q ss_pred HHHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-cCEEEEEeCcEEEEecChhH
Q 000452 1390 RQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRK 1468 (1495)
Q Consensus 1390 rQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~ 1468 (1495)
|||++||||++++|++|+|||||++||+++...+.+.|++..+++|+|+++|+++.+.. ||+|++|++|++++.|++++
T Consensus 149 ~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~ 228 (242)
T TIGR03411 149 KQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQ 228 (242)
T ss_pred HHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHH
Confidence 99999999999999999999999999999999999999988777999999999999975 99999999999999999999
Q ss_pred Hhh
Q 000452 1469 LLE 1471 (1495)
Q Consensus 1469 Ll~ 1471 (1495)
++.
T Consensus 229 ~~~ 231 (242)
T TIGR03411 229 VQA 231 (242)
T ss_pred Hhc
Confidence 874
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-39 Score=385.06 Aligned_cols=213 Identities=27% Similarity=0.424 Sum_probs=191.1
Q ss_pred eEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccE
Q 000452 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLS 1326 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~is 1326 (1495)
.++++|++++|+. ..+|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.++|.++.+++..++|++++
T Consensus 3 ~L~~~nls~~y~~--~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig 80 (402)
T PRK09536 3 MIDVSDLSVEFGD--TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVA 80 (402)
T ss_pred eEEEeeEEEEECC--EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceE
Confidence 4899999999964 46999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcccCcC-CCCcHHHhcCCCC-----------CCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHH
Q 000452 1327 IIPQDPVM-FEGTVRSNVDPLE-----------EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVC 1394 (1495)
Q Consensus 1327 iIpQdp~L-F~GTIR~NLdp~~-----------~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~ 1394 (1495)
++||++.+ |+.|+++|+.... ..+++.+.++++.+++.+...+. ...||+|||||++
T Consensus 81 ~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~-----------~~~LSgGerQRv~ 149 (402)
T PRK09536 81 SVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRP-----------VTSLSGGERQRVL 149 (402)
T ss_pred EEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCC-----------hhhCCHHHHHHHH
Confidence 99999987 6779999995321 12245688999999998665432 3479999999999
Q ss_pred HHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhh-ccCEEEEEeCcEEEEecChhHHhhc
Q 000452 1395 LGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHF-SDCTVITIAHRITSVI-DSDMVLLLSHGLIEEYDSPRKLLEN 1472 (1495)
Q Consensus 1395 LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f-~~~TVI~IAHRl~ti~-~~DrIlVL~~G~ivE~gsp~~Ll~~ 1472 (1495)
|||||+++|+||+|||||++||+.+...+.+.|++.. .+.|||+++|+++.+. .||||++|++|++++.|+|++++..
T Consensus 150 IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~~ 229 (402)
T PRK09536 150 LARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTA 229 (402)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhCc
Confidence 9999999999999999999999999999999999875 4789999999999995 5999999999999999999999854
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-39 Score=370.63 Aligned_cols=213 Identities=25% Similarity=0.392 Sum_probs=186.5
Q ss_pred EEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCC-HHHHhcccE
Q 000452 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIG-LHDLRTRLS 1326 (1495)
Q Consensus 1248 I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~-l~~LR~~is 1326 (1495)
++++|++++|+.+ +++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+ ...+|++++
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (274)
T PRK13644 2 IRLENVSYSYPDG-TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVG 80 (274)
T ss_pred EEEEEEEEEcCCC-CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheE
Confidence 7899999999643 35999999999999999999999999999999999999999999999999998775 467889999
Q ss_pred EEcccCc--CCCCcHHHhcCCCC---CCC----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHH
Q 000452 1327 IIPQDPV--MFEGTVRSNVDPLE---EYT----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGR 1397 (1495)
Q Consensus 1327 iIpQdp~--LF~GTIR~NLdp~~---~~s----d~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LAR 1397 (1495)
|+||+|. ++..|+++|+.... ..+ ++++.++++.+++.+..... ...||+|||||++|||
T Consensus 81 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LS~G~~qrv~lar 149 (274)
T PRK13644 81 IVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRS-----------PKTLSGGQGQCVALAG 149 (274)
T ss_pred EEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCC-----------cccCCHHHHHHHHHHH
Confidence 9999985 56789999996431 122 34567778888876554433 3579999999999999
Q ss_pred HHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhccCEEEEEeCcEEEEecChhHHhhc
Q 000452 1398 VLLKRRKILMLDEATASVDTATDNLIQQSLRQHF-SDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLEN 1472 (1495)
Q Consensus 1398 ALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f-~~~TVI~IAHRl~ti~~~DrIlVL~~G~ivE~gsp~~Ll~~ 1472 (1495)
||+++|+||||||||++||+.+...+.+.|++.. .++|||+++|+++.+..||+|++|++|++++.|+++++...
T Consensus 150 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 150 ILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 9999999999999999999999999999998764 47999999999999988999999999999999999998754
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-39 Score=359.90 Aligned_cols=202 Identities=30% Similarity=0.429 Sum_probs=178.7
Q ss_pred EEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccEE
Q 000452 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSI 1327 (1495)
Q Consensus 1248 I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~isi 1327 (1495)
|+++|++++|+. .++|+|+||+|++| ++||+|+||||||||+++|.|+++|++|+|.++|.++.+.+ ..+|++++|
T Consensus 1 i~~~~~~~~~~~--~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 76 (211)
T cd03264 1 LQLENLTKRYGK--KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIGY 76 (211)
T ss_pred CEEEEEEEEECC--EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheEE
Confidence 578999999964 35999999999999 99999999999999999999999999999999999998877 778999999
Q ss_pred EcccCcCCCC-cHHHhcCCC---CCCC----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHH
Q 000452 1328 IPQDPVMFEG-TVRSNVDPL---EEYT----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVL 1399 (1495)
Q Consensus 1328 IpQdp~LF~G-TIR~NLdp~---~~~s----d~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAL 1399 (1495)
+||+|.+|.+ |+++|+... ...+ ++++.++++.+++.+.... . ..+||+|||||++||||+
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~----~~~LS~G~~qrv~la~al 145 (211)
T cd03264 77 LPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKK-------K----IGSLSGGMRRRVGIAQAL 145 (211)
T ss_pred ecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhC-------c----hhhCCHHHHHHHHHHHHH
Confidence 9999999987 999998631 1122 3467888999888655332 2 246999999999999999
Q ss_pred ccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-cCEEEEEeCcEEEEec
Q 000452 1400 LKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGLIEEYD 1464 (1495)
Q Consensus 1400 Lr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~g 1464 (1495)
+++|++|+|||||++||+.+.+.+.+.|++..+++|+|+|+|+++.+.. ||||++|++|++++.|
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 146 VGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999988777999999999999875 9999999999999865
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-39 Score=349.22 Aligned_cols=221 Identities=28% Similarity=0.363 Sum_probs=186.0
Q ss_pred eEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccE
Q 000452 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLS 1326 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~is 1326 (1495)
.+++++|+..|.. ..||+||||+|++||.|+|+||||||||||++++.|+..|++|+|.+||.++... ...++
T Consensus 3 ~l~i~~v~~~f~~--~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~~ 75 (248)
T COG1116 3 LLEIEGVSKSFGG--VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDIG 75 (248)
T ss_pred eEEEEeeEEEeCc--eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCEE
Confidence 5899999999976 4699999999999999999999999999999999999999999999999988544 45799
Q ss_pred EEcccCcCCCC-cHHHhcCCC-CC--C----CHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHH
Q 000452 1327 IIPQDPVMFEG-TVRSNVDPL-EE--Y----TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRV 1398 (1495)
Q Consensus 1327 iIpQdp~LF~G-TIR~NLdp~-~~--~----sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARA 1398 (1495)
||+|++.||+- ||++|+... .. . ..+.+.++|+++||.++-.+.|. .||||||||++||||
T Consensus 76 ~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~-----------qLSGGMrQRVaiARA 144 (248)
T COG1116 76 YVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPH-----------QLSGGMRQRVAIARA 144 (248)
T ss_pred EEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCcc-----------ccChHHHHHHHHHHH
Confidence 99999999997 999998632 21 1 23468899999999999888775 579999999999999
Q ss_pred HccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecCchh-hhccCEEEEEeC--cEE---EEecChhHHh
Q 000452 1399 LLKRRKILMLDEATASVDTATDNLIQQSLRQHFS--DCTVITIAHRITS-VIDSDMVLLLSH--GLI---EEYDSPRKLL 1470 (1495)
Q Consensus 1399 LLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~--~~TVI~IAHRl~t-i~~~DrIlVL~~--G~i---vE~gsp~~Ll 1470 (1495)
|+.+|+||+||||.++||+.|...+|+-+.+..+ ++||++|||+++. +.-+|||+||.+ |+| ++.+-|..-
T Consensus 145 L~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~~~~~i~l~rpR- 223 (248)
T COG1116 145 LATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIGEELEIDLPRPR- 223 (248)
T ss_pred HhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCcceeeEEecCCCCCc-
Confidence 9999999999999999999999999998877653 5999999999986 556999999999 444 333332221
Q ss_pred hcCCChHHHHHHHHhh
Q 000452 1471 ENKSSSFSQLVAEYTQ 1486 (1495)
Q Consensus 1471 ~~~~s~f~~lv~~~~~ 1486 (1495)
...+..|..+.++-+.
T Consensus 224 ~~~~~~f~~l~~~i~~ 239 (248)
T COG1116 224 IRGDPEFLELREELLE 239 (248)
T ss_pred cccChHHHHHHHHHHH
Confidence 2345678777766554
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=356.47 Aligned_cols=202 Identities=33% Similarity=0.435 Sum_probs=174.9
Q ss_pred cEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe--------------
Q 000452 617 AIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------- 682 (1495)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~-------------- 682 (1495)
.|.+++.+..|+ ..++++|||++|+.||++|+.|||||||||||++|+|+..|++|.|.++|.
T Consensus 2 ~i~i~~~~~~~~---~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~ 78 (345)
T COG1118 2 SIRINNVKKRFG---AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRK 78 (345)
T ss_pred ceeehhhhhhcc---cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcc
Confidence 377888888885 457899999999999999999999999999999999999999999999995
Q ss_pred EEEEccCCccc-CccHHHHHhcCCCC---------CHHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHH
Q 000452 683 KAYVAQSPWIQ-SGKIEDNILFGKEM---------DRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQ 752 (1495)
Q Consensus 683 ~ayv~Q~~~l~-~~ti~enI~fg~~~---------~~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~ 752 (1495)
+|||+|+.-+| ..||.|||.||.+. .+.+..+.++.|+|+.--+ ..+.+||||||||||
T Consensus 79 VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~-----------ryP~QLSGGQrQRVA 147 (345)
T COG1118 79 VGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLAD-----------RYPAQLSGGQRQRVA 147 (345)
T ss_pred eeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhh-----------cCchhcChHHHHHHH
Confidence 59999998876 67999999999732 2356677788888865333 567899999999999
Q ss_pred HHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCcc-ccCCEEEEEeCCEEEEecChHHHHh
Q 000452 753 IARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLN-SKTVLYVTHQVEFL-PAADLVLVIKDGKITQAGKYTDVIN 830 (1495)
Q Consensus 753 LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvIlvTH~~~~l-~~~d~i~~l~~G~i~~~g~~~~l~~ 830 (1495)
|||||..+|+++||||||+|||++..+.+-..+..-..+ |.|+++||||.++. ..||+|++|++|+|.+.|+++|+..
T Consensus 148 LARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~ 227 (345)
T COG1118 148 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYD 227 (345)
T ss_pred HHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhc
Confidence 999999999999999999999999988876544333333 78999999999986 4599999999999999999999976
Q ss_pred cC
Q 000452 831 SG 832 (1495)
Q Consensus 831 ~~ 832 (1495)
..
T Consensus 228 ~P 229 (345)
T COG1118 228 HP 229 (345)
T ss_pred CC
Confidence 53
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=381.35 Aligned_cols=217 Identities=24% Similarity=0.401 Sum_probs=192.4
Q ss_pred ceEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhccc
Q 000452 1246 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRL 1325 (1495)
Q Consensus 1246 g~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i 1325 (1495)
..++++|++++|.. ..+|+|+||+|++||.++|+|+||||||||+++|.|+.+|++|+|.+||.++..++.+ ++++
T Consensus 13 ~~L~l~~l~~~~~~--~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 88 (375)
T PRK09452 13 PLVELRGISKSFDG--KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHV 88 (375)
T ss_pred ceEEEEEEEEEECC--eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 35999999999964 3599999999999999999999999999999999999999999999999999887654 5789
Q ss_pred EEEcccCcCCCC-cHHHhcCCC-C--CCC----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHH
Q 000452 1326 SIIPQDPVMFEG-TVRSNVDPL-E--EYT----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGR 1397 (1495)
Q Consensus 1326 siIpQdp~LF~G-TIR~NLdp~-~--~~s----d~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LAR 1397 (1495)
+|++|++.+|.. ||++||... . ..+ ++++.++++.+++.+...+.| ..||||||||++|||
T Consensus 89 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----------~~LSgGq~QRVaLAR 157 (375)
T PRK09452 89 NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKP-----------HQLSGGQQQRVAIAR 157 (375)
T ss_pred EEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHHHHH
Confidence 999999999976 999999632 1 223 345778899999987776665 368999999999999
Q ss_pred HHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecCchhhh-ccCEEEEEeCcEEEEecChhHHhhcCC
Q 000452 1398 VLLKRRKILMLDEATASVDTATDNLIQQSLRQHFS--DCTVITIAHRITSVI-DSDMVLLLSHGLIEEYDSPRKLLENKS 1474 (1495)
Q Consensus 1398 ALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~--~~TVI~IAHRl~ti~-~~DrIlVL~~G~ivE~gsp~~Ll~~~~ 1474 (1495)
||+++|++|+||||||+||..+...+.+.|++..+ +.|+|+|||+++.+. -||+|++|++|+|++.|+|+++++++.
T Consensus 158 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p~ 237 (375)
T PRK09452 158 AVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPK 237 (375)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence 99999999999999999999999999999998764 789999999999876 499999999999999999999998776
Q ss_pred ChH
Q 000452 1475 SSF 1477 (1495)
Q Consensus 1475 s~f 1477 (1495)
..|
T Consensus 238 ~~~ 240 (375)
T PRK09452 238 NLF 240 (375)
T ss_pred cHH
Confidence 554
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=368.29 Aligned_cols=219 Identities=26% Similarity=0.480 Sum_probs=188.4
Q ss_pred eEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccc-----CCccEEEEcCEeCCC--CCHH
Q 000452 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVE-----PAAGQILIDGIDISL--IGLH 1319 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~e-----p~~G~I~IDG~dI~~--i~l~ 1319 (1495)
.|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+.+ |++|+|.+||.++.. .+..
T Consensus 21 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (268)
T PRK14248 21 ILEVKDLSIYYGE--KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVV 98 (268)
T ss_pred eEEEEEEEEEeCC--ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHH
Confidence 5999999999964 459999999999999999999999999999999999865 789999999999875 3455
Q ss_pred HHhcccEEEcccCcCCCCcHHHhcCCC----CC----CCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHH
Q 000452 1320 DLRTRLSIIPQDPVMFEGTVRSNVDPL----EE----YTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQ 1391 (1495)
Q Consensus 1320 ~LR~~isiIpQdp~LF~GTIR~NLdp~----~~----~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQ 1391 (1495)
.+|++++|+||+|.+|.+|+++|+... .. ..++.+.++++.+++.+.+.. .......+||+||||
T Consensus 99 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq~q 171 (268)
T PRK14248 99 NLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKD-------RLHSSALSLSGGQQQ 171 (268)
T ss_pred HHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHH-------HHhcCcccCCHHHHH
Confidence 678899999999999999999998631 11 113457778888887543321 123445689999999
Q ss_pred HHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-cCEEEEEeCcEEEEecChhHHh
Q 000452 1392 LVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLL 1470 (1495)
Q Consensus 1392 rl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~Ll 1470 (1495)
|++|||||+++|+||||||||++||+.+...+.+.|++..+++|||+++|+++.+.. ||+|++|++|++++.|+++++.
T Consensus 172 rl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 251 (268)
T PRK14248 172 RLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIF 251 (268)
T ss_pred HHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999988767899999999998764 9999999999999999999998
Q ss_pred hcCC
Q 000452 1471 ENKS 1474 (1495)
Q Consensus 1471 ~~~~ 1474 (1495)
.++.
T Consensus 252 ~~~~ 255 (268)
T PRK14248 252 TSPK 255 (268)
T ss_pred hCCC
Confidence 6543
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-39 Score=371.54 Aligned_cols=215 Identities=23% Similarity=0.392 Sum_probs=189.8
Q ss_pred eEEEeeeeEEeCCC----CCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCC-HHHH
Q 000452 1247 KIDLRDLQVRYAPH----MPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIG-LHDL 1321 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~----~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~-l~~L 1321 (1495)
-++++|++++|+.. .+++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+ ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 58999999999743 246999999999999999999999999999999999999999999999999998654 4568
Q ss_pred hcccEEEcccCc--CCCCcHHHhcCCCC---CCC----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHH
Q 000452 1322 RTRLSIIPQDPV--MFEGTVRSNVDPLE---EYT----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQL 1392 (1495)
Q Consensus 1322 R~~isiIpQdp~--LF~GTIR~NLdp~~---~~s----d~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQr 1392 (1495)
|++++|+||+|. +|..|+++|+.... ..+ ++++.++++.+++.++..+.| ..||+|||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAP-----------HLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHH
Confidence 899999999984 67679999996321 122 456788899999987765544 4799999999
Q ss_pred HHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCchhhhccCEEEEEeCcEEEEecChhHHh
Q 000452 1393 VCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHF--SDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLL 1470 (1495)
Q Consensus 1393 l~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f--~~~TVI~IAHRl~ti~~~DrIlVL~~G~ivE~gsp~~Ll 1470 (1495)
++|||||+++|++|||||||++||+.+...+.+.|++.. .++|||+|+|+++.+..||+|++|++|++++.|+|+++.
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999999864 378999999999999889999999999999999999997
Q ss_pred hc
Q 000452 1471 EN 1472 (1495)
Q Consensus 1471 ~~ 1472 (1495)
.+
T Consensus 233 ~~ 234 (280)
T PRK13633 233 KE 234 (280)
T ss_pred cC
Confidence 54
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-39 Score=370.33 Aligned_cols=215 Identities=26% Similarity=0.377 Sum_probs=190.4
Q ss_pred eEEEeeeeEEeCCC-CCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhccc
Q 000452 1247 KIDLRDLQVRYAPH-MPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRL 1325 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~-~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i 1325 (1495)
-|+++||+++|+.. ..++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++...+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48999999999743 34599999999999999999999999999999999999999999999999999988888899999
Q ss_pred EEEcccC--cCCCCcHHHhcCCC-C--CCCHH----HHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHH
Q 000452 1326 SIIPQDP--VMFEGTVRSNVDPL-E--EYTDE----QIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLG 1396 (1495)
Q Consensus 1326 siIpQdp--~LF~GTIR~NLdp~-~--~~sd~----ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LA 1396 (1495)
+|+||+| .++..|+.+||... . ..+++ ++.++++.+++.++..+. ...||+|||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTRE-----------PARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCC-----------cccCCHHHHHHHHHH
Confidence 9999998 47788999999632 1 23443 356788888887654432 357999999999999
Q ss_pred HHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecCchhhhccCEEEEEeCcEEEEecChhHHhhc
Q 000452 1397 RVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFS--DCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLEN 1472 (1495)
Q Consensus 1397 RALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~--~~TVI~IAHRl~ti~~~DrIlVL~~G~ivE~gsp~~Ll~~ 1472 (1495)
|||+++|+||||||||++||+.+...+.+.|++..+ ++|||+|+|+++.+..||+|++|++|++++.|++++++++
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFAT 230 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999987754 7899999999999988999999999999999999998864
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-39 Score=327.48 Aligned_cols=210 Identities=29% Similarity=0.450 Sum_probs=186.4
Q ss_pred EEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccEE
Q 000452 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSI 1327 (1495)
Q Consensus 1248 I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~isi 1327 (1495)
|.+++|.++|.. .|. ..+++|++||+|||+|+||||||||++++.||..|.+|+|.|+|+|....++. ++-+++
T Consensus 2 l~L~~V~~~y~~-~~~---~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RPVSm 75 (231)
T COG3840 2 LALDDVRFSYGH-LPM---RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVSM 75 (231)
T ss_pred ccccceEEeeCc-ceE---EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCChhh
Confidence 567899999964 343 47799999999999999999999999999999999999999999999877665 467999
Q ss_pred EcccCcCCCC-cHHHhcC----CCC---CCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHH
Q 000452 1328 IPQDPVMFEG-TVRSNVD----PLE---EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVL 1399 (1495)
Q Consensus 1328 IpQdp~LF~G-TIR~NLd----p~~---~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAL 1399 (1495)
+.||.-||.- ||++|+. |.- ....+.+..|+.++|+.++...+|+ .||||||||++|||+|
T Consensus 76 lFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~-----------~LSGGqRQRvALARcl 144 (231)
T COG3840 76 LFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG-----------ELSGGQRQRVALARCL 144 (231)
T ss_pred hhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc-----------ccCchHHHHHHHHHHH
Confidence 9999999977 9999986 432 3345679999999999999999986 5799999999999999
Q ss_pred ccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCchhhhc-cCEEEEEeCcEEEEecChhHHhhcCC
Q 000452 1400 LKRRKILMLDEATASVDTATDNLIQQSLRQHF--SDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLENKS 1474 (1495)
Q Consensus 1400 Lr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f--~~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~Ll~~~~ 1474 (1495)
+|+.+||+||||.|+||+.-.+.+...+.+.. ++.|+++|||.++.+.. +||++++|+|||++.|+-++++..++
T Consensus 145 vR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~~ 222 (231)
T COG3840 145 VREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGKA 222 (231)
T ss_pred hccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccCC
Confidence 99999999999999999999998888877665 46899999999998765 99999999999999999999997654
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=369.27 Aligned_cols=220 Identities=26% Similarity=0.464 Sum_probs=190.1
Q ss_pred ceEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccc-----CCccEEEEcCEeCCCC--CH
Q 000452 1246 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVE-----PAAGQILIDGIDISLI--GL 1318 (1495)
Q Consensus 1246 g~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~e-----p~~G~I~IDG~dI~~i--~l 1318 (1495)
..|+++|++++|+. .++|+|+||+|++||++||+|++|||||||+++|.|+++ |++|+|.+||.++... +.
T Consensus 38 ~~l~i~~l~~~~~~--~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~ 115 (285)
T PRK14254 38 TVIEARDLNVFYGD--EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDP 115 (285)
T ss_pred ceEEEEEEEEEECC--EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccch
Confidence 46999999999964 359999999999999999999999999999999999997 6899999999998653 45
Q ss_pred HHHhcccEEEcccCcCCCCcHHHhcCCC------CCCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHH
Q 000452 1319 HDLRTRLSIIPQDPVMFEGTVRSNVDPL------EEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQL 1392 (1495)
Q Consensus 1319 ~~LR~~isiIpQdp~LF~GTIR~NLdp~------~~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQr 1392 (1495)
..+|++++|+||+|.+|.+|+++|+... ....++++.++++..++.+.+... ......+||+|||||
T Consensus 116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~-------~~~~~~~LSgGe~qr 188 (285)
T PRK14254 116 VALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQ-------LDSSGLDLSGGQQQR 188 (285)
T ss_pred HhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHH-------HhCCcccCCHHHHHH
Confidence 6788999999999999999999999631 111245788889998886544321 234456899999999
Q ss_pred HHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-cCEEE-EEeCcEEEEecChhHHh
Q 000452 1393 VCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVID-SDMVL-LLSHGLIEEYDSPRKLL 1470 (1495)
Q Consensus 1393 l~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~~-~DrIl-VL~~G~ivE~gsp~~Ll 1470 (1495)
++|||||+++|+||||||||++||.++...+.+.|++..+++|||+|+|+++.+.. |||++ +|++|+|++.|+++++.
T Consensus 189 v~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~~ 268 (285)
T PRK14254 189 LCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKIF 268 (285)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999998777899999999999876 99975 57999999999999998
Q ss_pred hcCC
Q 000452 1471 ENKS 1474 (1495)
Q Consensus 1471 ~~~~ 1474 (1495)
+++.
T Consensus 269 ~~~~ 272 (285)
T PRK14254 269 ENPE 272 (285)
T ss_pred hCcC
Confidence 6543
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-39 Score=367.24 Aligned_cols=220 Identities=29% Similarity=0.424 Sum_probs=189.8
Q ss_pred ceEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccC-----CccEEEEcCEeCCC--CCH
Q 000452 1246 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEP-----AAGQILIDGIDISL--IGL 1318 (1495)
Q Consensus 1246 g~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep-----~~G~I~IDG~dI~~--i~l 1318 (1495)
+.++++|++++|++ .++|+|+||+|++||++||+|++|||||||+++|+|+++| ++|+|.+||.++.. ...
T Consensus 6 ~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (259)
T PRK14260 6 PAIKVKDLSFYYNT--SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRINI 83 (259)
T ss_pred ceEEEEEEEEEECC--eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccch
Confidence 46999999999964 3599999999999999999999999999999999999985 48999999999864 445
Q ss_pred HHHhcccEEEcccCcCCCCcHHHhcCCC----CCCC----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHH
Q 000452 1319 HDLRTRLSIIPQDPVMFEGTVRSNVDPL----EEYT----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQR 1390 (1495)
Q Consensus 1319 ~~LR~~isiIpQdp~LF~GTIR~NLdp~----~~~s----d~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQr 1390 (1495)
..+|.+++|+||+|.+|+.|+++|+... .... ++.+.++++.+++.+.+... + ...+..||+|||
T Consensus 84 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~---~----~~~~~~LS~G~~ 156 (259)
T PRK14260 84 NRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDK---L----NKSALGLSGGQQ 156 (259)
T ss_pred HhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhH---h----cCCcccCCHHHH
Confidence 6788999999999999999999999631 1112 23466888888887654322 2 344568999999
Q ss_pred HHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-cCEEEEEe-----CcEEEEec
Q 000452 1391 QLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVID-SDMVLLLS-----HGLIEEYD 1464 (1495)
Q Consensus 1391 Qrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~~-~DrIlVL~-----~G~ivE~g 1464 (1495)
||++|||||+++|++|+|||||++||+.+...+.+.|++..+++|||+|||+++.+.. ||++++|+ +|++++.|
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~ 236 (259)
T PRK14260 157 QRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFG 236 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeC
Confidence 9999999999999999999999999999999999999988777999999999999876 99999998 59999999
Q ss_pred ChhHHhhcCC
Q 000452 1465 SPRKLLENKS 1474 (1495)
Q Consensus 1465 sp~~Ll~~~~ 1474 (1495)
+++++++++.
T Consensus 237 ~~~~~~~~~~ 246 (259)
T PRK14260 237 VTTQIFSNPL 246 (259)
T ss_pred CHHHHhcCCC
Confidence 9999986543
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-39 Score=359.32 Aligned_cols=203 Identities=26% Similarity=0.391 Sum_probs=175.6
Q ss_pred EEEeeeeEEeCCCC--CcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHH---h
Q 000452 1248 IDLRDLQVRYAPHM--PFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDL---R 1322 (1495)
Q Consensus 1248 I~f~nv~~~Y~~~~--~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~L---R 1322 (1495)
|+++||+++|++.. .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.|+.+++..+. |
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 68999999996432 459999999999999999999999999999999999999999999999999988876543 4
Q ss_pred -cccEEEcccCcCCC-CcHHHhcCCC---CCCC----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHH
Q 000452 1323 -TRLSIIPQDPVMFE-GTVRSNVDPL---EEYT----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLV 1393 (1495)
Q Consensus 1323 -~~isiIpQdp~LF~-GTIR~NLdp~---~~~s----d~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl 1393 (1495)
++++|+||+|.+|. .|+++|+... ...+ ++++.++++..++.+...+. ...||+|||||+
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv 150 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHR-----------PSELSGGERQRV 150 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCC-----------hhhCCHHHHHHH
Confidence 68999999999986 5999999631 1222 23567778887776544332 357999999999
Q ss_pred HHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCchhhhccCEEEEEeCcEEE
Q 000452 1394 CLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHF--SDCTVITIAHRITSVIDSDMVLLLSHGLIE 1461 (1495)
Q Consensus 1394 ~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f--~~~TVI~IAHRl~ti~~~DrIlVL~~G~iv 1461 (1495)
+|||||+++|+||||||||++||.++...+.+.|++.. .++|||+|+|+++.+..||+|++|++|+++
T Consensus 151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 99999999999999999999999999999999998764 378999999999999899999999999986
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-39 Score=357.34 Aligned_cols=202 Identities=24% Similarity=0.373 Sum_probs=179.0
Q ss_pred EEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccEE
Q 000452 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSI 1327 (1495)
Q Consensus 1248 I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~isi 1327 (1495)
|+++|++++|+. .++|+|+||+|++||.++|+|+||||||||+++|.|+.+|++|+|.+||.++.+. .++|++++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~~ 76 (208)
T cd03268 1 LKTNDLTKTYGK--KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIGA 76 (208)
T ss_pred CEEEEEEEEECC--eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEEE
Confidence 578999999953 4699999999999999999999999999999999999999999999999998765 567889999
Q ss_pred EcccCcCC-CCcHHHhcCCC---CCCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCC
Q 000452 1328 IPQDPVMF-EGTVRSNVDPL---EEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRR 1403 (1495)
Q Consensus 1328 IpQdp~LF-~GTIR~NLdp~---~~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALLr~~ 1403 (1495)
+||+|.+| ..|+++|+... ...+++++.++++..++.+...+. ...||+|||||++||||++++|
T Consensus 77 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~la~al~~~p 145 (208)
T cd03268 77 LIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKK-----------VKGFSLGMKQRLGIALALLGNP 145 (208)
T ss_pred ecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhh-----------HhhCCHHHHHHHHHHHHHhcCC
Confidence 99999888 46999999632 123567888999999987665443 3469999999999999999999
Q ss_pred CeEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-cCEEEEEeCcEEEEec
Q 000452 1404 KILMLDEATASVDTATDNLIQQSLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGLIEEYD 1464 (1495)
Q Consensus 1404 ~ILiLDEaTsslD~~Td~~Iq~~Ir~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~g 1464 (1495)
++|+|||||++||+.+.+.+.+.|++.. .++|+|+++|+++.+.. ||+|++|++|++++.|
T Consensus 146 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 146 DLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999998764 47899999999999865 9999999999999865
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=364.17 Aligned_cols=219 Identities=27% Similarity=0.447 Sum_probs=189.5
Q ss_pred eEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCC-----ccEEEEcCEeCCCC--CHH
Q 000452 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPA-----AGQILIDGIDISLI--GLH 1319 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~-----~G~I~IDG~dI~~i--~l~ 1319 (1495)
.|+++|++++|.. +++|+|+||+|++||++||+|++|||||||+++|.|+++|. +|+|.+||.++... +..
T Consensus 4 ~l~~~~l~~~~~~--~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 81 (251)
T PRK14249 4 KIKIRGVNFFYHK--HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVV 81 (251)
T ss_pred eEEEEEEEEEECC--eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChH
Confidence 6899999999964 45999999999999999999999999999999999999987 69999999998753 456
Q ss_pred HHhcccEEEcccCcCCCCcHHHhcCCCC---C-CC----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHH
Q 000452 1320 DLRTRLSIIPQDPVMFEGTVRSNVDPLE---E-YT----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQ 1391 (1495)
Q Consensus 1320 ~LR~~isiIpQdp~LF~GTIR~NLdp~~---~-~s----d~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQ 1391 (1495)
.+|++++|+||+|.+|.+|+++|+.... . .. ++.+.++++..++.+.+.. .....+.+||+||||
T Consensus 82 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~Gq~q 154 (251)
T PRK14249 82 NLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKD-------NLHKSGLALSGGQQQ 154 (251)
T ss_pred HhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhh-------HhhCCcccCCHHHHH
Confidence 7899999999999999999999996321 1 11 2345667777777654432 234556789999999
Q ss_pred HHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-cCEEEEEeCcEEEEecChhHHh
Q 000452 1392 LVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLL 1470 (1495)
Q Consensus 1392 rl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~Ll 1470 (1495)
|++|||||+.+|++|||||||++||..+...+.+.|++..+++|||+|||+++.+.+ ||+|++|++|++++.|+++++.
T Consensus 155 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14249 155 RLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIF 234 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987667999999999999877 7999999999999999999997
Q ss_pred hcCC
Q 000452 1471 ENKS 1474 (1495)
Q Consensus 1471 ~~~~ 1474 (1495)
.++.
T Consensus 235 ~~~~ 238 (251)
T PRK14249 235 SRPR 238 (251)
T ss_pred hCCC
Confidence 6543
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=368.10 Aligned_cols=220 Identities=27% Similarity=0.428 Sum_probs=191.7
Q ss_pred cceEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccC-----CccEEEEcCEeCCC--CC
Q 000452 1245 HGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEP-----AAGQILIDGIDISL--IG 1317 (1495)
Q Consensus 1245 ~g~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep-----~~G~I~IDG~dI~~--i~ 1317 (1495)
.+.|+++|++++|.. .++|+|+||+|++||.+||+|++|||||||+++|.|+++| ++|+|.+||.|+.. .+
T Consensus 23 ~~~l~~~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~ 100 (272)
T PRK14236 23 QTALEVRNLNLFYGD--KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVD 100 (272)
T ss_pred CcEEEEEEEEEEECC--eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccC
Confidence 457999999999964 3599999999999999999999999999999999999884 89999999999875 34
Q ss_pred HHHHhcccEEEcccCcCCCCcHHHhcCCC---CC-CC----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchH
Q 000452 1318 LHDLRTRLSIIPQDPVMFEGTVRSNVDPL---EE-YT----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQ 1389 (1495)
Q Consensus 1318 l~~LR~~isiIpQdp~LF~GTIR~NLdp~---~~-~s----d~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQ 1389 (1495)
...+|++++|+||++.+|.+|+++|+... .. .. ++++.++++.+++.+.+.. .....+.+||+||
T Consensus 101 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~Gq 173 (272)
T PRK14236 101 VAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKD-------RLHENAFGLSGGQ 173 (272)
T ss_pred HHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHH-------HhhCCcccCCHHH
Confidence 56789999999999999999999999632 11 11 3457888888888765432 2344567899999
Q ss_pred HHHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-cCEEEEEeCcEEEEecChhH
Q 000452 1390 RQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRK 1468 (1495)
Q Consensus 1390 rQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~ 1468 (1495)
|||++|||||+++|+||||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 174 ~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 253 (272)
T PRK14236 174 QQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDT 253 (272)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHH
Confidence 99999999999999999999999999999999999999988778999999999999865 99999999999999999999
Q ss_pred HhhcC
Q 000452 1469 LLENK 1473 (1495)
Q Consensus 1469 Ll~~~ 1473 (1495)
+.+++
T Consensus 254 ~~~~~ 258 (272)
T PRK14236 254 LFTSP 258 (272)
T ss_pred HhcCC
Confidence 98654
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-39 Score=358.13 Aligned_cols=210 Identities=21% Similarity=0.338 Sum_probs=187.6
Q ss_pred EEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCH----HHHhcc
Q 000452 1249 DLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGL----HDLRTR 1324 (1495)
Q Consensus 1249 ~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l----~~LR~~ 1324 (1495)
.+.|+.++|+++ .++++|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++...+. ...|+.
T Consensus 2 ~~~~~~~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 80 (218)
T cd03290 2 QVTNGYFSWGSG-LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYS 80 (218)
T ss_pred eeeeeEEecCCC-CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcce
Confidence 578899999866 459999999999999999999999999999999999999999999999998876542 345678
Q ss_pred cEEEcccCcCCCCcHHHhcCCCCCCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCC
Q 000452 1325 LSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRK 1404 (1495)
Q Consensus 1325 isiIpQdp~LF~GTIR~NLdp~~~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALLr~~~ 1404 (1495)
++|+||+|.+|+.|+++|+.....+++++..++++.+++.+.+..+|.|+++.......+||+|||||++||||++++|+
T Consensus 81 i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ 160 (218)
T cd03290 81 VAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTN 160 (218)
T ss_pred EEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 99999999999999999998654556777889999999999998899999999988899999999999999999999999
Q ss_pred eEEEEcCCCCCCHHHHHHHHH--HHHHhc-CCcEEEEEecCchhhhccCEEEEEeCcE
Q 000452 1405 ILMLDEATASVDTATDNLIQQ--SLRQHF-SDCTVITIAHRITSVIDSDMVLLLSHGL 1459 (1495)
Q Consensus 1405 ILiLDEaTsslD~~Td~~Iq~--~Ir~~f-~~~TVI~IAHRl~ti~~~DrIlVL~~G~ 1459 (1495)
||||||||++||..+...+.+ .++... .+.|+|+++|+.+.+..||+|++|++|.
T Consensus 161 illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 161 IVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred EEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 999999999999998887776 444332 3689999999999999999999999884
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=364.01 Aligned_cols=215 Identities=25% Similarity=0.391 Sum_probs=184.5
Q ss_pred eEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCC--------H
Q 000452 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIG--------L 1318 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~--------l 1318 (1495)
.++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ .
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (250)
T PRK11264 3 AIEVKNLVKKFHG--QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLI 80 (250)
T ss_pred cEEEeceEEEECC--eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHH
Confidence 3899999999964 35999999999999999999999999999999999999999999999999987542 3
Q ss_pred HHHhcccEEEcccCcCCC-CcHHHhcCCC----CCCC----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchH
Q 000452 1319 HDLRTRLSIIPQDPVMFE-GTVRSNVDPL----EEYT----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQ 1389 (1495)
Q Consensus 1319 ~~LR~~isiIpQdp~LF~-GTIR~NLdp~----~~~s----d~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQ 1389 (1495)
..+|++++|+||+|.+|. .|+++|+... .... ++.+.++++..++.+.. .....+||+||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LS~Gq 149 (250)
T PRK11264 81 RQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKE-----------TSYPRRLSGGQ 149 (250)
T ss_pred HHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchh-----------hCChhhCChHH
Confidence 567889999999999886 6999999631 1222 23456677777765432 23456899999
Q ss_pred HHHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-cCEEEEEeCcEEEEecChh
Q 000452 1390 RQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPR 1467 (1495)
Q Consensus 1390 rQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~ 1467 (1495)
|||++|||||+.+|+||||||||++||+.+...+.+.|++.. .++|||+|+|+++.+.. ||+|++|++|++++.|+++
T Consensus 150 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 229 (250)
T PRK11264 150 QQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAK 229 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999998865 37899999999999865 9999999999999999999
Q ss_pred HHhhcCC
Q 000452 1468 KLLENKS 1474 (1495)
Q Consensus 1468 ~Ll~~~~ 1474 (1495)
++.+.+.
T Consensus 230 ~~~~~~~ 236 (250)
T PRK11264 230 ALFADPQ 236 (250)
T ss_pred HHhcCCC
Confidence 9986543
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=366.80 Aligned_cols=221 Identities=27% Similarity=0.454 Sum_probs=188.8
Q ss_pred cceEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccc-----CCccEEEEcCEeCCC--CC
Q 000452 1245 HGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVE-----PAAGQILIDGIDISL--IG 1317 (1495)
Q Consensus 1245 ~g~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~e-----p~~G~I~IDG~dI~~--i~ 1317 (1495)
...++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+
T Consensus 22 ~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 99 (271)
T PRK14238 22 KVVFDTQNLNLWYGE--DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYS 99 (271)
T ss_pred ceEEEEeeeEEEECC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccccccc
Confidence 336999999999964 359999999999999999999999999999999999987 699999999999853 45
Q ss_pred HHHHhcccEEEcccCcCCCCcHHHhcCCC---CCCC-----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchH
Q 000452 1318 LHDLRTRLSIIPQDPVMFEGTVRSNVDPL---EEYT-----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQ 1389 (1495)
Q Consensus 1318 l~~LR~~isiIpQdp~LF~GTIR~NLdp~---~~~s-----d~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQ 1389 (1495)
...+|++++|+||+|.+|.+|+++|+... .+.+ ++.+.++++..++.+.+. ......+.+||+||
T Consensus 100 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~-------~~~~~~~~~LSgGe 172 (271)
T PRK14238 100 VEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELK-------DRLHDNAYGLSGGQ 172 (271)
T ss_pred HHHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHH-------HHHhcCcccCCHHH
Confidence 56788999999999999999999999631 1222 223456666666543332 22345567899999
Q ss_pred HHHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-cCEEEEEeCcEEEEecChhH
Q 000452 1390 RQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRK 1468 (1495)
Q Consensus 1390 rQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~ 1468 (1495)
|||++|||||+++|+||||||||++||+.+...+.+.|++..+++|+|+|+|+++.+.. ||+|++|++|++++.|++++
T Consensus 173 ~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~ 252 (271)
T PRK14238 173 QQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDK 252 (271)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999988778999999999999865 99999999999999999999
Q ss_pred HhhcCC
Q 000452 1469 LLENKS 1474 (1495)
Q Consensus 1469 Ll~~~~ 1474 (1495)
+..++.
T Consensus 253 ~~~~~~ 258 (271)
T PRK14238 253 IFSNPS 258 (271)
T ss_pred HHcCCC
Confidence 986643
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-39 Score=363.64 Aligned_cols=213 Identities=23% Similarity=0.379 Sum_probs=184.0
Q ss_pred EEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCC--HHHHhccc
Q 000452 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIG--LHDLRTRL 1325 (1495)
Q Consensus 1248 I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~--l~~LR~~i 1325 (1495)
++++|++++|+. +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ...+|+++
T Consensus 2 l~~~~l~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 79 (240)
T PRK09493 2 IEFKNVSKHFGP--TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEA 79 (240)
T ss_pred EEEEeEEEEECC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhce
Confidence 689999999964 45999999999999999999999999999999999999999999999999998643 45678899
Q ss_pred EEEcccCcCCC-CcHHHhcCCCC----CCC----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHH
Q 000452 1326 SIIPQDPVMFE-GTVRSNVDPLE----EYT----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLG 1396 (1495)
Q Consensus 1326 siIpQdp~LF~-GTIR~NLdp~~----~~s----d~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LA 1396 (1495)
+|+||++.+|. .|+++|+.... ..+ ++++.++++..++.+...+ ....||+|||||++||
T Consensus 80 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LS~G~~qrv~la 148 (240)
T PRK09493 80 GMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHH-----------YPSELSGGQQQRVAIA 148 (240)
T ss_pred EEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhc-----------ChhhcCHHHHHHHHHH
Confidence 99999999886 59999996321 122 2345667777776544433 2357999999999999
Q ss_pred HHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-cCEEEEEeCcEEEEecChhHHhhcC
Q 000452 1397 RVLLKRRKILMLDEATASVDTATDNLIQQSLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLENK 1473 (1495)
Q Consensus 1397 RALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~Ll~~~ 1473 (1495)
||++++|+||+|||||++||.++...+.+.|++.. .++|+|+|||+++.+.. ||+|++|++|++++.|++.++++++
T Consensus 149 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 227 (240)
T PRK09493 149 RALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKNP 227 (240)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcCC
Confidence 99999999999999999999999999999998864 47899999999999865 9999999999999999999988654
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-39 Score=363.74 Aligned_cols=214 Identities=21% Similarity=0.313 Sum_probs=183.4
Q ss_pred eEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCC------CCCHHH
Q 000452 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDIS------LIGLHD 1320 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~------~i~l~~ 1320 (1495)
.++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. ......
T Consensus 2 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (242)
T PRK11124 2 SIQLNGINCFYGA--HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRE 79 (242)
T ss_pred EEEEEeeEEEECC--eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHH
Confidence 3789999999964 35999999999999999999999999999999999999999999999999874 123456
Q ss_pred HhcccEEEcccCcCCCC-cHHHhcCC--C--CCCC----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHH
Q 000452 1321 LRTRLSIIPQDPVMFEG-TVRSNVDP--L--EEYT----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQ 1391 (1495)
Q Consensus 1321 LR~~isiIpQdp~LF~G-TIR~NLdp--~--~~~s----d~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQ 1391 (1495)
+|++++|+||+|.+|.+ |+++|+.. . ...+ .+++.++++..++.+...+. ..+||+||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LS~G~~q 148 (242)
T PRK11124 80 LRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRF-----------PLHLSGGQQQ 148 (242)
T ss_pred HHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCC-----------hhhCCHHHHH
Confidence 78899999999999976 99999952 1 1122 23456677777776554443 3479999999
Q ss_pred HHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-cCEEEEEeCcEEEEecChhHH
Q 000452 1392 LVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKL 1469 (1495)
Q Consensus 1392 rl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~L 1469 (1495)
|++||||++++|+||||||||++||+++...+.+.|++.. .++|+|+++|+++.+.. ||+|++|++|++++.|+++++
T Consensus 149 rv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 149 RVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHh
Confidence 9999999999999999999999999999999999998865 37999999999999865 999999999999999999987
Q ss_pred hhcC
Q 000452 1470 LENK 1473 (1495)
Q Consensus 1470 l~~~ 1473 (1495)
.+.+
T Consensus 229 ~~~~ 232 (242)
T PRK11124 229 TQPQ 232 (242)
T ss_pred cCcc
Confidence 6543
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-39 Score=355.84 Aligned_cols=198 Identities=24% Similarity=0.365 Sum_probs=174.2
Q ss_pred EEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccEEE
Q 000452 1249 DLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSII 1328 (1495)
Q Consensus 1249 ~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~isiI 1328 (1495)
+++|++++|+.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ...|++++|+
T Consensus 1 ~~~~l~~~~~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~~ 76 (205)
T cd03226 1 RIENISFSYKKG-TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGYV 76 (205)
T ss_pred CcccEEEEeCCc-CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEEE
Confidence 468999999642 459999999999999999999999999999999999999999999999999864 4577889999
Q ss_pred cccC--cCCCCcHHHhcCCCC---CCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCC
Q 000452 1329 PQDP--VMFEGTVRSNVDPLE---EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRR 1403 (1495)
Q Consensus 1329 pQdp--~LF~GTIR~NLdp~~---~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALLr~~ 1403 (1495)
||+| .+|+.|+++|+.... ...++++.++++.+++.++..+.| ..||+|||||++|||||+++|
T Consensus 77 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral~~~p 145 (205)
T cd03226 77 MQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHP-----------LSLSGGQKQRLAIAAALLSGK 145 (205)
T ss_pred ecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCc-----------hhCCHHHHHHHHHHHHHHhCC
Confidence 9998 467899999997421 123457899999999987655444 368999999999999999999
Q ss_pred CeEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-cCEEEEEeCcEEE
Q 000452 1404 KILMLDEATASVDTATDNLIQQSLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGLIE 1461 (1495)
Q Consensus 1404 ~ILiLDEaTsslD~~Td~~Iq~~Ir~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~iv 1461 (1495)
++|+|||||++||+++...+.+.|++.. +++|+|++||+++.+.. ||+|++|++|+++
T Consensus 146 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 146 DLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999999999999998873 57899999999999875 9999999999975
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=370.06 Aligned_cols=214 Identities=24% Similarity=0.376 Sum_probs=189.5
Q ss_pred eEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccE
Q 000452 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLS 1326 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~is 1326 (1495)
-++++|++++|+.+ ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...++++++
T Consensus 3 ~l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 3 LIETRDLCYSYSGS-KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG 81 (277)
T ss_pred eEEEEEEEEEeCCC-CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence 37899999999643 34999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EEcccC--cCCCCcHHHhcCCCC---CCC----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHH
Q 000452 1327 IIPQDP--VMFEGTVRSNVDPLE---EYT----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGR 1397 (1495)
Q Consensus 1327 iIpQdp--~LF~GTIR~NLdp~~---~~s----d~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LAR 1397 (1495)
|+||+| .+|+.|+++|+.... ..+ ++.+.++++.+++.+.....| ..||+|||||++|||
T Consensus 82 ~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrl~lar 150 (277)
T PRK13652 82 LVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVP-----------HHLSGGEKKRVAIAG 150 (277)
T ss_pred EEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCHHHHHHHHHHH
Confidence 999998 478889999996311 233 345788899999876655443 479999999999999
Q ss_pred HHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecCchhhh-ccCEEEEEeCcEEEEecChhHHhhc
Q 000452 1398 VLLKRRKILMLDEATASVDTATDNLIQQSLRQHFS--DCTVITIAHRITSVI-DSDMVLLLSHGLIEEYDSPRKLLEN 1472 (1495)
Q Consensus 1398 ALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~--~~TVI~IAHRl~ti~-~~DrIlVL~~G~ivE~gsp~~Ll~~ 1472 (1495)
||+.+|++|||||||++||+.+...+.+.|++..+ ++|||++||+++.+. .||||++|++|++++.|+++++++.
T Consensus 151 aL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 228 (277)
T PRK13652 151 VIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228 (277)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcC
Confidence 99999999999999999999999999999988653 789999999999985 5999999999999999999999753
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=363.95 Aligned_cols=218 Identities=25% Similarity=0.410 Sum_probs=189.2
Q ss_pred eEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccC-----CccEEEEcCEeCCCC--CHH
Q 000452 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEP-----AAGQILIDGIDISLI--GLH 1319 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep-----~~G~I~IDG~dI~~i--~l~ 1319 (1495)
.|+++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+.+| ++|+|.+||.++... +..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (251)
T PRK14270 4 KMESKNLNLWYGE--KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVV 81 (251)
T ss_pred EEEEEEeEEEECC--eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHH
Confidence 5899999999964 4599999999999999999999999999999999999875 799999999999753 345
Q ss_pred HHhcccEEEcccCcCCCCcHHHhcCCCC---CC-C----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHH
Q 000452 1320 DLRTRLSIIPQDPVMFEGTVRSNVDPLE---EY-T----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQ 1391 (1495)
Q Consensus 1320 ~LR~~isiIpQdp~LF~GTIR~NLdp~~---~~-s----d~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQ 1391 (1495)
.+|++++|+||+|.+|..|+++|+.... .. + ++++.++++.+++.+.+... .......||+||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~~~LS~G~~q 154 (251)
T PRK14270 82 ELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDD-------LKKSALKLSGGQQQ 154 (251)
T ss_pred HHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhH-------hhCCcccCCHHHHH
Confidence 6789999999999999999999996321 11 1 24567888888886544322 23345689999999
Q ss_pred HHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-cCEEEEEeCcEEEEecChhHHh
Q 000452 1392 LVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLL 1470 (1495)
Q Consensus 1392 rl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~Ll 1470 (1495)
|++||||++++|+||||||||++||+.+...+.+.|++..++.|+|+|||+++.+.. ||||++|++|++++.|++++++
T Consensus 155 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 155 RLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIF 234 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHHh
Confidence 999999999999999999999999999999999999988777999999999999876 9999999999999999999998
Q ss_pred hcC
Q 000452 1471 ENK 1473 (1495)
Q Consensus 1471 ~~~ 1473 (1495)
.++
T Consensus 235 ~~~ 237 (251)
T PRK14270 235 LEP 237 (251)
T ss_pred cCC
Confidence 654
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=375.07 Aligned_cols=226 Identities=20% Similarity=0.313 Sum_probs=187.9
Q ss_pred eEEEeeeeEEeCCCC--CcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccc----CCccEEEEcCEeCCCCCHHH
Q 000452 1247 KIDLRDLQVRYAPHM--PFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVE----PAAGQILIDGIDISLIGLHD 1320 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~~--~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~e----p~~G~I~IDG~dI~~i~l~~ 1320 (1495)
-++++|++++|+... ..+|+||||+|++||.+||||+||||||||+++|.|+++ |++|+|.+||.|+.+++.++
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 479999999997532 359999999999999999999999999999999999997 48999999999999998776
Q ss_pred Hhc----ccEEEcccCc--CCCC-cHHHhc----CCCCCC----CHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCC
Q 000452 1321 LRT----RLSIIPQDPV--MFEG-TVRSNV----DPLEEY----TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENW 1385 (1495)
Q Consensus 1321 LR~----~isiIpQdp~--LF~G-TIR~NL----dp~~~~----sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nL 1385 (1495)
+|+ ++++|||+|. ++.. |+.+|+ ...... .++++.++|++++|.+.... .......|
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~--------l~~~p~~L 154 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASR--------LDVYPHQL 154 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHH--------HhCCchhC
Confidence 653 6999999995 4432 665554 322111 23567888999998653211 12345679
Q ss_pred CchHHHHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecCchhhh-ccCEEEEEeCcEEEE
Q 000452 1386 SMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFS--DCTVITIAHRITSVI-DSDMVLLLSHGLIEE 1462 (1495)
Q Consensus 1386 S~GQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~--~~TVI~IAHRl~ti~-~~DrIlVL~~G~ivE 1462 (1495)
|||||||++|||||+.+|++||+||||++||..+...|.+.|++..+ +.|+|+|||+++.+. .||||+||++|+|+|
T Consensus 155 SgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive 234 (326)
T PRK11022 155 SGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVE 234 (326)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999988753 789999999999985 599999999999999
Q ss_pred ecChhHHhhcCCChHHHH
Q 000452 1463 YDSPRKLLENKSSSFSQL 1480 (1495)
Q Consensus 1463 ~gsp~~Ll~~~~s~f~~l 1480 (1495)
.|+++++++++...|.+.
T Consensus 235 ~g~~~~~~~~p~hpyt~~ 252 (326)
T PRK11022 235 TGKAHDIFRAPRHPYTQA 252 (326)
T ss_pred ECCHHHHhhCCCChHHHH
Confidence 999999998765555543
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=359.84 Aligned_cols=218 Identities=28% Similarity=0.425 Sum_probs=190.9
Q ss_pred EEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe-------------EE
Q 000452 618 IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------KA 684 (1495)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~-------------~a 684 (1495)
++++|+++.|+.. .+++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|. ++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKPD-GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCCC-CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 4689999999632 357999999999999999999999999999999999999999999999883 69
Q ss_pred EEccCCcccCccHHHHHhcCCC-CCHHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHHHHHhccCCCE
Q 000452 685 YVAQSPWIQSGKIEDNILFGKE-MDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADI 763 (1495)
Q Consensus 685 yv~Q~~~l~~~ti~enI~fg~~-~~~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~i 763 (1495)
|++|++++++.|++||+.++.. ...++..+.++..++.+.++.+|.|.++..++++.+|||||||||+||||++.+|++
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l 159 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRI 159 (237)
T ss_pred EEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence 9999999999999999988653 344555566677788888888988888888899999999999999999999999999
Q ss_pred eEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEecCCCccccCCEEEEEeCCEEEEecChHHHHhcCCchhH
Q 000452 764 YLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVINSGTDFME 837 (1495)
Q Consensus 764 llLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 837 (1495)
+||||||++||+.+.+.+.+. +....+++|+|++||+++++..||++++|++|++++.|+++++.+....+..
T Consensus 160 lllDEP~~~LD~~~~~~l~~~-l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~ 232 (237)
T cd03252 160 LIFDEATSALDYESEHAIMRN-MHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAY 232 (237)
T ss_pred EEEeCCcccCCHHHHHHHHHH-HHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhccChHHH
Confidence 999999999999998888754 5444568999999999999877999999999999999999998776544443
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=353.22 Aligned_cols=201 Identities=60% Similarity=1.002 Sum_probs=183.4
Q ss_pred EEEEeeEEEecCCCC--CCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCeEEEEccCCcccCc
Q 000452 618 IEIADGNFSWDISSH--NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSG 695 (1495)
Q Consensus 618 i~~~~~~~~~~~~~~--~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~~ayv~Q~~~l~~~ 695 (1495)
++++|+++.|..... +++|+|+||+|++|++++|+||||||||||+++|+|+.+|++|+|.++|.++|++|+|.+++.
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~~~l~~~ 80 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWIQNG 80 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecCchhccC
Confidence 468999999963211 369999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHhcCCCCCHHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHHHHHhccCCCEeEecCcCCccCH
Q 000452 696 KIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDA 775 (1495)
Q Consensus 696 ti~enI~fg~~~~~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~ 775 (1495)
|++||+.++..+++++..++.+.+++.+.++.+|.|.+|.+++++.+||||||||++||||++++|+++||||||++||+
T Consensus 81 t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~ 160 (204)
T cd03250 81 TIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDA 160 (204)
T ss_pred cHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCH
Confidence 99999999877777777888888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-hCCCEEEEEecCCCccccCCEEEEEeCCE
Q 000452 776 HTGSHLFKEVLLGL-LNSKTVLYVTHQVEFLPAADLVLVIKDGK 818 (1495)
Q Consensus 776 ~~~~~i~~~~~~~~-~~~~tvIlvTH~~~~l~~~d~i~~l~~G~ 818 (1495)
+..+.+++.++... .+++|+|++||+++.+..||++++|++|+
T Consensus 161 ~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 161 HVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred HHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 99888887666544 34799999999999887799999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=347.38 Aligned_cols=193 Identities=32% Similarity=0.429 Sum_probs=161.9
Q ss_pred EEEEeeEEEecCCC-CCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe--------------
Q 000452 618 IEIADGNFSWDISS-HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------- 682 (1495)
Q Consensus 618 i~~~~~~~~~~~~~-~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~-------------- 682 (1495)
++++|++..|.... ..++|+++||+|++||+++|+|||||||||||++|.|+..|++|.|.++|.
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 57899999996432 246899999999999999999999999999999999999999999999983
Q ss_pred ---EEEEccCCcc-cCccHHHHHhcC----CCC---CHHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHH
Q 000452 683 ---KAYVAQSPWI-QSGKIEDNILFG----KEM---DRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRI 751 (1495)
Q Consensus 683 ---~ayv~Q~~~l-~~~ti~enI~fg----~~~---~~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv 751 (1495)
+|||+|+..+ .+.|++|||.+. ... .+++.++.++..+|.+... ..++.+|||||||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~----------~~~p~eLSGGqqQRV 151 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLL----------KKKPSELSGGQQQRV 151 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhc----------cCCchhcCHHHHHHH
Confidence 5999999876 567999999853 221 1344555566556654332 256789999999999
Q ss_pred HHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCccccCCEEEEEeCCEEE
Q 000452 752 QIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL-NSKTVLYVTHQVEFLPAADLVLVIKDGKIT 820 (1495)
Q Consensus 752 ~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvIlvTH~~~~l~~~d~i~~l~~G~i~ 820 (1495)
||||||+.+|+++|.||||.+||.++++.+++.+..... .|+|+|+||||.+....|||++.|+||++.
T Consensus 152 AIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~ 221 (226)
T COG1136 152 AIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIE 221 (226)
T ss_pred HHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeee
Confidence 999999999999999999999999999999875444333 489999999999999999999999999954
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-38 Score=366.32 Aligned_cols=219 Identities=28% Similarity=0.423 Sum_probs=189.0
Q ss_pred eEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccC-----CccEEEEcCEeCCCCC-HHH
Q 000452 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEP-----AAGQILIDGIDISLIG-LHD 1320 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep-----~~G~I~IDG~dI~~i~-l~~ 1320 (1495)
.++++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.+.+ ...
T Consensus 21 ~l~i~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (276)
T PRK14271 21 AMAAVNLTLGFAG--KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLE 98 (276)
T ss_pred EEEEeeEEEEECC--EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHH
Confidence 6899999999964 3599999999999999999999999999999999999986 6999999999998763 456
Q ss_pred HhcccEEEcccCcCCCCcHHHhcCCC----CCCCHHHH----HHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHH
Q 000452 1321 LRTRLSIIPQDPVMFEGTVRSNVDPL----EEYTDEQI----WEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQL 1392 (1495)
Q Consensus 1321 LR~~isiIpQdp~LF~GTIR~NLdp~----~~~sd~ei----~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQr 1392 (1495)
+|++++|+||+|.+|..|+++|+... ...+++++ .++++.+++.+.+. +.......+||+|||||
T Consensus 99 ~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~l~~~~~~LSgGq~qr 171 (276)
T PRK14271 99 FRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVK-------DRLSDSPFRLSGGQQQL 171 (276)
T ss_pred HhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhh-------hHhhCCcccCCHHHHHH
Confidence 78999999999999999999999632 12344443 45567777654331 22345567899999999
Q ss_pred HHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-cCEEEEEeCcEEEEecChhHHhh
Q 000452 1393 VCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLE 1471 (1495)
Q Consensus 1393 l~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~Ll~ 1471 (1495)
++|||||+++|+||||||||++||..+...+.+.|++..+++|||+|+|+++.+.. ||||++|++|++++.|+++++.+
T Consensus 172 l~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 251 (276)
T PRK14271 172 LCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFS 251 (276)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999987667999999999999875 99999999999999999999987
Q ss_pred cCC
Q 000452 1472 NKS 1474 (1495)
Q Consensus 1472 ~~~ 1474 (1495)
.+.
T Consensus 252 ~~~ 254 (276)
T PRK14271 252 SPK 254 (276)
T ss_pred CcC
Confidence 643
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-39 Score=368.55 Aligned_cols=212 Identities=28% Similarity=0.386 Sum_probs=188.3
Q ss_pred eEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccE
Q 000452 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLS 1326 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~is 1326 (1495)
.|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.|+.+.+..++|+.++
T Consensus 11 ~l~i~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 88 (265)
T PRK10575 11 TFALRNVSFRVPG--RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVA 88 (265)
T ss_pred eEEEeeEEEEECC--EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheE
Confidence 5999999999963 35999999999999999999999999999999999999999999999999999888888999999
Q ss_pred EEcccCcCCCC-cHHHhcCCCC-----------CCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHH
Q 000452 1327 IIPQDPVMFEG-TVRSNVDPLE-----------EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVC 1394 (1495)
Q Consensus 1327 iIpQdp~LF~G-TIR~NLdp~~-----------~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~ 1394 (1495)
|+||++.++.+ |+++|+.... ...++++.++++.+++.+.....| .+||||||||++
T Consensus 89 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~ 157 (265)
T PRK10575 89 YLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV-----------DSLSGGERQRAW 157 (265)
T ss_pred EeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----------ccCCHHHHHHHH
Confidence 99999877665 9999996310 112456888999999866544433 369999999999
Q ss_pred HHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCchhhh-ccCEEEEEeCcEEEEecChhHHhh
Q 000452 1395 LGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHF--SDCTVITIAHRITSVI-DSDMVLLLSHGLIEEYDSPRKLLE 1471 (1495)
Q Consensus 1395 LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f--~~~TVI~IAHRl~ti~-~~DrIlVL~~G~ivE~gsp~~Ll~ 1471 (1495)
|||||+.+|+||||||||++||..+...+.+.|++.. .++|||+|||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 158 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~ 237 (265)
T PRK10575 158 IAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMR 237 (265)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhcC
Confidence 9999999999999999999999999999999998864 2799999999999986 599999999999999999999874
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-39 Score=358.36 Aligned_cols=200 Identities=31% Similarity=0.450 Sum_probs=174.2
Q ss_pred EEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccEEE
Q 000452 1249 DLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSII 1328 (1495)
Q Consensus 1249 ~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~isiI 1328 (1495)
+++|++++|+.+..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++|+
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 46899999975334599999999999999999999999999999999999999999999999999988888889999999
Q ss_pred cccC--cCCCCcHHHhcCCC---CCCC----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHH
Q 000452 1329 PQDP--VMFEGTVRSNVDPL---EEYT----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVL 1399 (1495)
Q Consensus 1329 pQdp--~LF~GTIR~NLdp~---~~~s----d~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAL 1399 (1495)
||+| .++..|+++|+... ...+ ++++.++++..++.+...+. ...||||||||++|||||
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrv~laral 149 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRS-----------PFTLSGGQKQRVAIAGVL 149 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCC-----------cccCCHHHHHHHHHHHHH
Confidence 9998 36788999999642 1122 23566778888776554332 357999999999999999
Q ss_pred ccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcC-CcEEEEEecCchhhhc-cCEEEEEeCcE
Q 000452 1400 LKRRKILMLDEATASVDTATDNLIQQSLRQHFS-DCTVITIAHRITSVID-SDMVLLLSHGL 1459 (1495)
Q Consensus 1400 Lr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~-~~TVI~IAHRl~ti~~-~DrIlVL~~G~ 1459 (1495)
+++|++|||||||++||+++...+.+.|++..+ ++|||+|||+++.+.. ||+|++|++|+
T Consensus 150 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 150 AMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 999999999999999999999999999988753 7899999999999987 99999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-39 Score=374.41 Aligned_cols=213 Identities=25% Similarity=0.405 Sum_probs=186.3
Q ss_pred ceEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhccc
Q 000452 1246 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRL 1325 (1495)
Q Consensus 1246 g~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i 1325 (1495)
..|+++||+++|+. ..+|+||||+|++||++||+||||||||||+++|.|+++|++|+|.|+|.|+...+ ...|+++
T Consensus 6 ~~i~i~~l~k~~~~--~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~i 82 (306)
T PRK13537 6 APIDFRNVEKRYGD--KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRV 82 (306)
T ss_pred ceEEEEeEEEEECC--eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcE
Confidence 46999999999964 45999999999999999999999999999999999999999999999999998755 4578999
Q ss_pred EEEcccCcCCC-CcHHHhcCCCC---CCCH----HHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHH
Q 000452 1326 SIIPQDPVMFE-GTVRSNVDPLE---EYTD----EQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGR 1397 (1495)
Q Consensus 1326 siIpQdp~LF~-GTIR~NLdp~~---~~sd----~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LAR 1397 (1495)
+|+||+|.+|. .|+++||..+. ..++ +++.++++.+++.+. .++++ .+||+|||||++|||
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~----~~LS~G~~qrl~la~ 151 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENK-------ADAKV----GELSGGMKRRLTLAR 151 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchH-------hcCch----hhCCHHHHHHHHHHH
Confidence 99999999986 59999997422 1232 345677777777543 34444 369999999999999
Q ss_pred HHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-cCEEEEEeCcEEEEecChhHHhhc
Q 000452 1398 VLLKRRKILMLDEATASVDTATDNLIQQSLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLEN 1472 (1495)
Q Consensus 1398 ALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~Ll~~ 1472 (1495)
||+.+|++|+|||||++||+.+...+.+.|++.. .++|||+++|+++.+.. ||+|++|++|++++.|+|+++.+.
T Consensus 152 aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 152 ALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred HHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999999999999999999875 37899999999999965 999999999999999999999754
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=366.46 Aligned_cols=222 Identities=23% Similarity=0.393 Sum_probs=192.9
Q ss_pred CCcceEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccC-----CccEEEEcCEeCC---
Q 000452 1243 PSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEP-----AAGQILIDGIDIS--- 1314 (1495)
Q Consensus 1243 p~~g~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep-----~~G~I~IDG~dI~--- 1314 (1495)
|..+.|+++|++++|+. .++|+|+||+|++||++||+|++|||||||+++|.|+.+| ++|+|.+||.++.
T Consensus 12 ~~~~~l~~~~l~~~~~~--~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~ 89 (265)
T PRK14252 12 PTQQKSEVNKLNFYYGG--YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILS 89 (265)
T ss_pred CCCceEEEEEEEEEECC--eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccc
Confidence 56788999999999974 3599999999999999999999999999999999999875 7999999998874
Q ss_pred -CCCHHHHhcccEEEcccCcCCCCcHHHhcCCCC--------CCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCC
Q 000452 1315 -LIGLHDLRTRLSIIPQDPVMFEGTVRSNVDPLE--------EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENW 1385 (1495)
Q Consensus 1315 -~i~l~~LR~~isiIpQdp~LF~GTIR~NLdp~~--------~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nL 1385 (1495)
....+.+|++++|+||+|.+|.+|+++|+.... +..++++.++++.+++.+.+. ........+|
T Consensus 90 ~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~L 162 (265)
T PRK14252 90 PEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVK-------DRLGDLAFNL 162 (265)
T ss_pred cccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhh-------HHHhCCcccC
Confidence 334567889999999999999999999996321 122467888898888765332 2234456789
Q ss_pred CchHHHHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-cCEEEEEeCcEEEEec
Q 000452 1386 SMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGLIEEYD 1464 (1495)
Q Consensus 1386 S~GQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~g 1464 (1495)
|+|||||++|||||+++|++|+|||||++||..+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 163 S~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g 242 (265)
T PRK14252 163 SGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFG 242 (265)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999988777899999999999965 9999999999999999
Q ss_pred ChhHHhhcC
Q 000452 1465 SPRKLLENK 1473 (1495)
Q Consensus 1465 sp~~Ll~~~ 1473 (1495)
+++++..++
T Consensus 243 ~~~~~~~~~ 251 (265)
T PRK14252 243 ATDTIFIKP 251 (265)
T ss_pred CHHHHHhCC
Confidence 999998644
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-39 Score=358.48 Aligned_cols=201 Identities=25% Similarity=0.352 Sum_probs=175.3
Q ss_pred EEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCH---HHHhcc
Q 000452 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGL---HDLRTR 1324 (1495)
Q Consensus 1248 I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l---~~LR~~ 1324 (1495)
|+++|++++|+.+ +.+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. ...|++
T Consensus 1 l~~~~l~~~~~~~-~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 79 (214)
T cd03292 1 IEFINVTKTYPNG-TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRK 79 (214)
T ss_pred CEEEEEEEEeCCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHh
Confidence 4789999999643 459999999999999999999999999999999999999999999999999987754 357889
Q ss_pred cEEEcccCcCCCC-cHHHhcCCC---CCC----CHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHH
Q 000452 1325 LSIIPQDPVMFEG-TVRSNVDPL---EEY----TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLG 1396 (1495)
Q Consensus 1325 isiIpQdp~LF~G-TIR~NLdp~---~~~----sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LA 1396 (1495)
++++||+|.+|.+ |+++|+... ... .++++.++++.+++.+...+.| .+||+|||||++||
T Consensus 80 i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~la 148 (214)
T cd03292 80 IGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALP-----------AELSGGEQQRVAIA 148 (214)
T ss_pred eEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCh-----------hhcCHHHHHHHHHH
Confidence 9999999999985 999999632 112 2346778888888866544433 47999999999999
Q ss_pred HHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-cCEEEEEeCcEE
Q 000452 1397 RVLLKRRKILMLDEATASVDTATDNLIQQSLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGLI 1460 (1495)
Q Consensus 1397 RALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~i 1460 (1495)
|||+++|+|+||||||++||+++...+.+.|++.. +++|+|+|||+++.+.+ ||+|++|++|++
T Consensus 149 ral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 149 RAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999863 47999999999999986 899999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-39 Score=361.83 Aligned_cols=211 Identities=27% Similarity=0.406 Sum_probs=186.7
Q ss_pred EEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccEE
Q 000452 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSI 1327 (1495)
Q Consensus 1248 I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~isi 1327 (1495)
|+++|++++|+. ..+++|+||+|+|||++||+|++|||||||+++|+|+++|.+|+|.+||.++...+. .|+.+++
T Consensus 1 l~~~~l~~~~~~--~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 76 (232)
T cd03300 1 IELENVSKFYGG--FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVNT 76 (232)
T ss_pred CEEEeEEEEeCC--eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceEE
Confidence 578999999975 359999999999999999999999999999999999999999999999999987664 3678999
Q ss_pred EcccCcCCCC-cHHHhcCCC-------CCCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHH
Q 000452 1328 IPQDPVMFEG-TVRSNVDPL-------EEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVL 1399 (1495)
Q Consensus 1328 IpQdp~LF~G-TIR~NLdp~-------~~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAL 1399 (1495)
+||+|.+|.+ |+++|+... ....++++.++++..++.+.....| .+||+|||||++||||+
T Consensus 77 ~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~lS~G~~qrl~laral 145 (232)
T cd03300 77 VFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKP-----------SQLSGGQQQRVAIARAL 145 (232)
T ss_pred EecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHHHH
Confidence 9999999976 999999621 1122456788888888877665544 47899999999999999
Q ss_pred ccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecCchhhhc-cCEEEEEeCcEEEEecChhHHhhcC
Q 000452 1400 LKRRKILMLDEATASVDTATDNLIQQSLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLENK 1473 (1495)
Q Consensus 1400 Lr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~Ll~~~ 1473 (1495)
+++|+++||||||+++|..+...+.+.|++..+ ++|||+++|+++.+.. ||+|++|++|++++.|+++++.+.+
T Consensus 146 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~~ 222 (232)
T cd03300 146 VNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEEP 222 (232)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhCC
Confidence 999999999999999999999999999988653 7999999999999865 8999999999999999999998654
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-39 Score=361.80 Aligned_cols=211 Identities=25% Similarity=0.437 Sum_probs=181.3
Q ss_pred EEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHH-hcccE
Q 000452 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDL-RTRLS 1326 (1495)
Q Consensus 1248 I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~L-R~~is 1326 (1495)
|+++||+++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.... |++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (232)
T cd03218 1 LRAENLSKRYGK--RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIG 78 (232)
T ss_pred CeEEEEEEEeCC--EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEE
Confidence 578999999964 359999999999999999999999999999999999999999999999999988876654 57899
Q ss_pred EEcccCcCCCC-cHHHhcCCC---CCCC----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHH
Q 000452 1327 IIPQDPVMFEG-TVRSNVDPL---EEYT----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRV 1398 (1495)
Q Consensus 1327 iIpQdp~LF~G-TIR~NLdp~---~~~s----d~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARA 1398 (1495)
|+||+|.+|.+ |+++|+... .... ++++.++++..++.+.. .....+||+|||||++||||
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~la~a 147 (232)
T cd03218 79 YLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLR-----------KSKASSLSGGERRRVEIARA 147 (232)
T ss_pred EecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhh-----------hCChhhCCHHHHHHHHHHHH
Confidence 99999999987 999999631 1122 22345566666654332 33446799999999999999
Q ss_pred HccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-cCEEEEEeCcEEEEecChhHHhh
Q 000452 1399 LLKRRKILMLDEATASVDTATDNLIQQSLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLE 1471 (1495)
Q Consensus 1399 LLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~Ll~ 1471 (1495)
++.+|++|||||||++||.++.+.+.+.|++.. .++|+|+++|+++.+.. ||+|++|++|++++.|+++++..
T Consensus 148 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 148 LATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 999999999999999999999999999998765 47899999999987765 99999999999999999999874
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-39 Score=359.47 Aligned_cols=203 Identities=27% Similarity=0.330 Sum_probs=176.6
Q ss_pred EEEeeeeEEeCCCC--CcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhccc
Q 000452 1248 IDLRDLQVRYAPHM--PFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRL 1325 (1495)
Q Consensus 1248 I~f~nv~~~Y~~~~--~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i 1325 (1495)
|+++|++++|+... .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. +++++
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 57899999996421 469999999999999999999999999999999999999999999999999863 46789
Q ss_pred EEEcccCcCCC-CcHHHhcCCC-C--C----CCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHH
Q 000452 1326 SIIPQDPVMFE-GTVRSNVDPL-E--E----YTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGR 1397 (1495)
Q Consensus 1326 siIpQdp~LF~-GTIR~NLdp~-~--~----~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LAR 1397 (1495)
+|+||+|.+|. .|+++|+... . . ..++++.+++++.++.+...+.+ .+||+|||||++|||
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrl~la~ 144 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYP-----------HQLSGGMRQRVALAR 144 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHHHH
Confidence 99999999987 6999999632 1 1 12456788899988876655443 469999999999999
Q ss_pred HHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCchhhhc-cCEEEEEe--CcEEEEecCh
Q 000452 1398 VLLKRRKILMLDEATASVDTATDNLIQQSLRQHF--SDCTVITIAHRITSVID-SDMVLLLS--HGLIEEYDSP 1466 (1495)
Q Consensus 1398 ALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f--~~~TVI~IAHRl~ti~~-~DrIlVL~--~G~ivE~gsp 1466 (1495)
||+++|++|||||||++||+.+...+.+.|++.. .++|||+|+|+++.+.+ ||+|++|+ +|+++|.++.
T Consensus 145 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 145 ALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 9999999999999999999999999999999864 37899999999998765 99999999 7999998764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-39 Score=357.61 Aligned_cols=202 Identities=22% Similarity=0.393 Sum_probs=175.7
Q ss_pred EEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccEE
Q 000452 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSI 1327 (1495)
Q Consensus 1248 I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~isi 1327 (1495)
|+++|++++|.. .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+.. +++++|
T Consensus 1 i~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~~ 76 (213)
T cd03301 1 VELENVTKRFGN--VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIAM 76 (213)
T ss_pred CEEEeeEEEECC--eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEEE
Confidence 578999999964 3599999999999999999999999999999999999999999999999999866543 568999
Q ss_pred EcccCcCCC-CcHHHhcCCC---CCCC----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHH
Q 000452 1328 IPQDPVMFE-GTVRSNVDPL---EEYT----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVL 1399 (1495)
Q Consensus 1328 IpQdp~LF~-GTIR~NLdp~---~~~s----d~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAL 1399 (1495)
+||++.+|. .|+++|+... ...+ ++++.++++..++.+.....| ..||+|||||++||||+
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qr~~laral 145 (213)
T cd03301 77 VFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKP-----------KQLSGGQRQRVALGRAI 145 (213)
T ss_pred EecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCCh-----------hhCCHHHHHHHHHHHHH
Confidence 999999985 5999999642 1122 335677788888866544433 47999999999999999
Q ss_pred ccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCchhhhc-cCEEEEEeCcEEEEec
Q 000452 1400 LKRRKILMLDEATASVDTATDNLIQQSLRQHF--SDCTVITIAHRITSVID-SDMVLLLSHGLIEEYD 1464 (1495)
Q Consensus 1400 Lr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f--~~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~g 1464 (1495)
+++|+||+|||||++||+++...+.+.|++.. .++|||+|+|+++.+.+ ||+|++|++|+++++|
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 146 VREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999999998864 37899999999998876 9999999999999986
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=364.60 Aligned_cols=219 Identities=23% Similarity=0.452 Sum_probs=189.3
Q ss_pred eEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccc-----CCccEEEEcCEeCCC--CCHH
Q 000452 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVE-----PAAGQILIDGIDISL--IGLH 1319 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~e-----p~~G~I~IDG~dI~~--i~l~ 1319 (1495)
.|+++||+++|+. .++|+|+||+|++||++||+|++|||||||+++|.|++. |++|+|.+||.++.. .+..
T Consensus 10 ~l~i~~v~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 87 (264)
T PRK14243 10 VLRTENLNVYYGS--FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPV 87 (264)
T ss_pred EEEEeeeEEEECC--EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChH
Confidence 5999999999964 359999999999999999999999999999999999986 479999999999853 4556
Q ss_pred HHhcccEEEcccCcCCCCcHHHhcCCCC---CC---CHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHH
Q 000452 1320 DLRTRLSIIPQDPVMFEGTVRSNVDPLE---EY---TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLV 1393 (1495)
Q Consensus 1320 ~LR~~isiIpQdp~LF~GTIR~NLdp~~---~~---sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl 1393 (1495)
.+|++++|+||+|.+|+.|+++|+.... .. .++++.++++.+++.+.+... ....+.+||+|||||+
T Consensus 88 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-------~~~~~~~LSgGq~qrv 160 (264)
T PRK14243 88 EVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDK-------LKQSGLSLSGGQQQRL 160 (264)
T ss_pred HHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHH-------hcCCcccCCHHHHHHH
Confidence 7889999999999999899999996421 11 234566778888887655321 2345668999999999
Q ss_pred HHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-cCEEEEEe---------CcEEEEe
Q 000452 1394 CLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVID-SDMVLLLS---------HGLIEEY 1463 (1495)
Q Consensus 1394 ~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~~-~DrIlVL~---------~G~ivE~ 1463 (1495)
+|||||+++|+||||||||++||+++...+.+.|++..+++|||+|+|+++.+.. ||||++|+ +|++++.
T Consensus 161 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~ 240 (264)
T PRK14243 161 CIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEF 240 (264)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEEe
Confidence 9999999999999999999999999999999999988777899999999998765 89999998 8999999
Q ss_pred cChhHHhhcCC
Q 000452 1464 DSPRKLLENKS 1474 (1495)
Q Consensus 1464 gsp~~Ll~~~~ 1474 (1495)
|+++++.+++.
T Consensus 241 ~~~~~~~~~~~ 251 (264)
T PRK14243 241 DRTEKIFNSPQ 251 (264)
T ss_pred CCHHHHHhCCC
Confidence 99999987543
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-39 Score=358.48 Aligned_cols=200 Identities=25% Similarity=0.354 Sum_probs=175.9
Q ss_pred EEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHH---HHhcc
Q 000452 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLH---DLRTR 1324 (1495)
Q Consensus 1248 I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~---~LR~~ 1324 (1495)
|+++|++++|+.+ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.|+.+++.. .+|++
T Consensus 2 l~~~~l~~~~~~~-~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 2 IEFHNVSKAYPGG-VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred EEEEeeeEEeCCC-ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 7899999999533 4599999999999999999999999999999999999999999999999999887643 46889
Q ss_pred cEEEcccCcCCC-CcHHHhcCCC----C---CCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHH
Q 000452 1325 LSIIPQDPVMFE-GTVRSNVDPL----E---EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLG 1396 (1495)
Q Consensus 1325 isiIpQdp~LF~-GTIR~NLdp~----~---~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LA 1396 (1495)
++|+||+|.+|. .|+++|+... + +..+++++++++..++.+.....| .+||+|||||++||
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~la 149 (214)
T TIGR02673 81 IGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFP-----------EQLSGGEQQRVAIA 149 (214)
T ss_pred eEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHHH
Confidence 999999999986 5999998632 1 112457888999999876654443 47999999999999
Q ss_pred HHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-cCEEEEEeCcE
Q 000452 1397 RVLLKRRKILMLDEATASVDTATDNLIQQSLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGL 1459 (1495)
Q Consensus 1397 RALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~ 1459 (1495)
|||+++|++|||||||++||+.+...+.+.|++.. +++|+|+|||+++.+.+ ||+|++|++|+
T Consensus 150 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 150 RAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 99999999999999999999999999999999864 47999999999999886 89999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=362.86 Aligned_cols=219 Identities=25% Similarity=0.421 Sum_probs=189.8
Q ss_pred eEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccC-----CccEEEEcCEeCCCC--CHH
Q 000452 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEP-----AAGQILIDGIDISLI--GLH 1319 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep-----~~G~I~IDG~dI~~i--~l~ 1319 (1495)
.|+++|++++|+. ..+|+|+||+|++||++||+|++|||||||+++|.|+.+| ++|+|.+||.++.+. +..
T Consensus 6 ~i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 83 (253)
T PRK14261 6 ILSTKNLNLWYGE--KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVV 83 (253)
T ss_pred eEEEeeeEEEECC--eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchh
Confidence 5999999999963 3599999999999999999999999999999999999763 489999999999876 456
Q ss_pred HHhcccEEEcccCcCCCCcHHHhcCCCC---C-C----CHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHH
Q 000452 1320 DLRTRLSIIPQDPVMFEGTVRSNVDPLE---E-Y----TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQ 1391 (1495)
Q Consensus 1320 ~LR~~isiIpQdp~LF~GTIR~NLdp~~---~-~----sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQ 1391 (1495)
+.|++++|+||+|.+|++|+++|+.... . . .++++.++++.+++.+.+. +.....+.+||+||||
T Consensus 84 ~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~~q 156 (253)
T PRK14261 84 ALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVK-------DRLHDSALSLSGGQQQ 156 (253)
T ss_pred hhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhH-------HHhhcChhhCCHHHHH
Confidence 7889999999999999999999997421 1 1 1345677788887765443 2234556789999999
Q ss_pred HHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-cCEEEEEeCcEEEEecChhHHh
Q 000452 1392 LVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLL 1470 (1495)
Q Consensus 1392 rl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~Ll 1470 (1495)
|++||||++.+|+++||||||++||.++...+.+.|++..+++|||+++|+++.+.. ||+|++|++|++++.|+++++.
T Consensus 157 rv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14261 157 RLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIF 236 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHHH
Confidence 999999999999999999999999999999999999988777999999999999965 9999999999999999999998
Q ss_pred hcCC
Q 000452 1471 ENKS 1474 (1495)
Q Consensus 1471 ~~~~ 1474 (1495)
+++.
T Consensus 237 ~~~~ 240 (253)
T PRK14261 237 ENPH 240 (253)
T ss_pred hCCC
Confidence 6543
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=365.37 Aligned_cols=211 Identities=26% Similarity=0.437 Sum_probs=187.4
Q ss_pred EEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccEE
Q 000452 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSI 1327 (1495)
Q Consensus 1248 I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~isi 1327 (1495)
++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+..++|+.++|
T Consensus 3 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (255)
T PRK11231 3 LRTENLTVGYGT--KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLAL 80 (255)
T ss_pred EEEEeEEEEECC--EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEE
Confidence 789999999964 359999999999999999999999999999999999999999999999999988888888999999
Q ss_pred EcccCcCCCC-cHHHhcCCC--------CC---CCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHH
Q 000452 1328 IPQDPVMFEG-TVRSNVDPL--------EE---YTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCL 1395 (1495)
Q Consensus 1328 IpQdp~LF~G-TIR~NLdp~--------~~---~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~L 1395 (1495)
+||++.+|.+ |+++|++.. .. ..++++.++++.+++.+...+ ....||+|||||++|
T Consensus 81 ~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~l 149 (255)
T PRK11231 81 LPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADR-----------RLTDLSGGQRQRAFL 149 (255)
T ss_pred ecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcC-----------CcccCCHHHHHHHHH
Confidence 9999999877 999999742 11 123457788888888654433 235799999999999
Q ss_pred HHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-cCEEEEEeCcEEEEecChhHHhh
Q 000452 1396 GRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLE 1471 (1495)
Q Consensus 1396 ARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~Ll~ 1471 (1495)
|||++++|++|||||||++||+++...+.+.|++.. .++|||+++|+++.+.. ||+|++|++|++++.|+++++..
T Consensus 150 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 150 AMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227 (255)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC
Confidence 999999999999999999999999999999998864 47899999999999865 99999999999999999999874
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-38 Score=364.86 Aligned_cols=225 Identities=27% Similarity=0.359 Sum_probs=188.3
Q ss_pred eEEEeeeeEEeCCC-------CCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHH
Q 000452 1247 KIDLRDLQVRYAPH-------MPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLH 1319 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~-------~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~ 1319 (1495)
.|+++||+++|+.. ...+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+..
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 37899999999642 35699999999999999999999999999999999999999999999999999887754
Q ss_pred H---HhcccEEEcccCc--CC-CCcHHHhcCC-C---CC----CCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCC
Q 000452 1320 D---LRTRLSIIPQDPV--MF-EGTVRSNVDP-L---EE----YTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENW 1385 (1495)
Q Consensus 1320 ~---LR~~isiIpQdp~--LF-~GTIR~NLdp-~---~~----~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nL 1385 (1495)
+ +|++++|+||+|. ++ ..|+++|+.. . .. ..++++.++++..++.+.. ....+.+|
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~----------~~~~~~~L 151 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSED----------ADKLPRQL 151 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhh----------hhCChhhC
Confidence 3 6788999999983 44 3699999841 1 11 2235677788888775221 12234579
Q ss_pred CchHHHHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecCchhhhc-cCEEEEEeCcEEEE
Q 000452 1386 SMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGLIEE 1462 (1495)
Q Consensus 1386 S~GQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE 1462 (1495)
|+|||||++|||||+.+|+||||||||++||+++...+.+.|++..+ ++|||+|+|+++.+.. ||+|++|++|++++
T Consensus 152 SgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 231 (265)
T TIGR02769 152 SGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVE 231 (265)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEE
Confidence 99999999999999999999999999999999999999999988653 7899999999999975 99999999999999
Q ss_pred ecChhHHhhcCCChHHHHH
Q 000452 1463 YDSPRKLLENKSSSFSQLV 1481 (1495)
Q Consensus 1463 ~gsp~~Ll~~~~s~f~~lv 1481 (1495)
.|+++++++.++...+++.
T Consensus 232 ~g~~~~~~~~~~~~~~~~~ 250 (265)
T TIGR02769 232 ECDVAQLLSFKHPAGRNLQ 250 (265)
T ss_pred ECCHHHHcCCCCHHHHHHH
Confidence 9999999875433344443
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=381.25 Aligned_cols=204 Identities=27% Similarity=0.424 Sum_probs=179.5
Q ss_pred cceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHH----hcccEEEcccCcCCCC-
Q 000452 1263 FVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDL----RTRLSIIPQDPVMFEG- 1337 (1495)
Q Consensus 1263 ~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~L----R~~isiIpQdp~LF~G- 1337 (1495)
.+|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.|+.+.+..++ |++++|+||++.+|..
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 38999999999999999999999999999999999999999999999999998887654 4689999999999975
Q ss_pred cHHHhcCCC---CCCC----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCeEEEEc
Q 000452 1338 TVRSNVDPL---EEYT----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDE 1410 (1495)
Q Consensus 1338 TIR~NLdp~---~~~s----d~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALLr~~~ILiLDE 1410 (1495)
|+++|+... ...+ ++++.++++.+++.++..+.| .+||||||||++|||||+.+|+||||||
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~-----------~~LSgGq~QRv~LArAL~~~P~iLLLDE 190 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYP-----------DELSGGMRQRVGLARALAINPDILLMDE 190 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCc-----------ccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 999999632 1122 356778899999987665554 3799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCchhhhc-cCEEEEEeCcEEEEecChhHHhhcCCChH
Q 000452 1411 ATASVDTATDNLIQQSLRQHF--SDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLENKSSSF 1477 (1495)
Q Consensus 1411 aTsslD~~Td~~Iq~~Ir~~f--~~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~Ll~~~~s~f 1477 (1495)
||++||+.+...+++.|++.. .++|||+|||+++.+.. ||+|++|++|++++.|+|+++++++...|
T Consensus 191 Pts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~~~~~~ 260 (400)
T PRK10070 191 AFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDY 260 (400)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhCcccHH
Confidence 999999999999999998864 47899999999998764 99999999999999999999987654433
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=369.17 Aligned_cols=215 Identities=26% Similarity=0.388 Sum_probs=183.5
Q ss_pred EEEeeeeEEeCCCC---CcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCC----CHHH
Q 000452 1248 IDLRDLQVRYAPHM---PFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLI----GLHD 1320 (1495)
Q Consensus 1248 I~f~nv~~~Y~~~~---~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i----~l~~ 1320 (1495)
|+++||+++|+... .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999997432 3599999999999999999999999999999999999999999999999998764 3567
Q ss_pred HhcccEEEcccC--cCCCCcHHHhcCCC---CCCCHHH----HHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHH
Q 000452 1321 LRTRLSIIPQDP--VMFEGTVRSNVDPL---EEYTDEQ----IWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQ 1391 (1495)
Q Consensus 1321 LR~~isiIpQdp--~LF~GTIR~NLdp~---~~~sd~e----i~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQ 1391 (1495)
+|++++|+||+| .+|+.|+++|+... ...++++ +.++++..++.+.. .......||+||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgG~~q 152 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESL----------FEKNPFELSGGQMR 152 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhh----------hhCCcccCCHHHHH
Confidence 889999999998 68889999999632 1233332 45566777765321 12334579999999
Q ss_pred HHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-cCEEEEEeCcEEEEecChhHH
Q 000452 1392 LVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKL 1469 (1495)
Q Consensus 1392 rl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~L 1469 (1495)
|++|||||+++|++|||||||++||+++...+.+.|++.. .++|||+|+|+++.+.. ||+|++|++|++++.|+++++
T Consensus 153 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (280)
T PRK13649 153 RVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI 232 (280)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999998864 37899999999998865 999999999999999999998
Q ss_pred hhc
Q 000452 1470 LEN 1472 (1495)
Q Consensus 1470 l~~ 1472 (1495)
+++
T Consensus 233 ~~~ 235 (280)
T PRK13649 233 FQD 235 (280)
T ss_pred hcC
Confidence 754
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=358.82 Aligned_cols=211 Identities=25% Similarity=0.414 Sum_probs=179.2
Q ss_pred EEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHH-HhcccE
Q 000452 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHD-LRTRLS 1326 (1495)
Q Consensus 1248 I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~-LR~~is 1326 (1495)
|+++||+++|+. .++|+|+||+|++||++||+|++|||||||+++|+|+++|++|+|.+||.++...+... .+++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (230)
T TIGR03410 1 LEVSNLNVYYGQ--SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIA 78 (230)
T ss_pred CEEEeEEEEeCC--eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeE
Confidence 578999999974 35999999999999999999999999999999999999999999999999998887654 467899
Q ss_pred EEcccCcCCCC-cHHHhcCCC-CC--CCHHH-HHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHcc
Q 000452 1327 IIPQDPVMFEG-TVRSNVDPL-EE--YTDEQ-IWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLK 1401 (1495)
Q Consensus 1327 iIpQdp~LF~G-TIR~NLdp~-~~--~sd~e-i~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALLr 1401 (1495)
|+||+|.+|.+ |+++|+... .. ..+++ ..++++..+ +++........+||+|||||++|||||++
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~----------~l~~~~~~~~~~LS~G~~qrv~la~al~~ 148 (230)
T TIGR03410 79 YVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFP----------VLKEMLGRRGGDLSGGQQQQLAIARALVT 148 (230)
T ss_pred EeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHH----------hHHHHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 99999999987 999999631 11 12222 233344432 12222334456799999999999999999
Q ss_pred CCCeEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecCchhhhc-cCEEEEEeCcEEEEecChhHHh
Q 000452 1402 RRKILMLDEATASVDTATDNLIQQSLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLL 1470 (1495)
Q Consensus 1402 ~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~Ll 1470 (1495)
+|+||+|||||++||+.+...+.+.|++..+ ++|+|+++|+++.+.. ||+|++|++|++++.|+++++.
T Consensus 149 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~~ 220 (230)
T TIGR03410 149 RPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELD 220 (230)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHcC
Confidence 9999999999999999999999999998753 7899999999999985 9999999999999999999873
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=359.88 Aligned_cols=212 Identities=22% Similarity=0.332 Sum_probs=179.9
Q ss_pred eEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHH-Hhccc
Q 000452 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHD-LRTRL 1325 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~-LR~~i 1325 (1495)
.|+++|++++|+. .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++.+.+..+ .|+++
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 82 (237)
T PRK11614 5 MLSFDKVSAHYGK--IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAV 82 (237)
T ss_pred EEEEEeEEEeeCC--ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCE
Confidence 4899999999964 45999999999999999999999999999999999999999999999999999887654 67889
Q ss_pred EEEcccCcCCCC-cHHHhcCCCC-CCCH----HHHHHHHHHc-CCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHH
Q 000452 1326 SIIPQDPVMFEG-TVRSNVDPLE-EYTD----EQIWEALDKC-QLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRV 1398 (1495)
Q Consensus 1326 siIpQdp~LF~G-TIR~NLdp~~-~~sd----~ei~~aL~~~-~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARA 1398 (1495)
+|+||++.+|.+ |+++|+.... ..+. +++.++++.. ++.+ ........||+|||||++||||
T Consensus 83 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~-----------~~~~~~~~LS~G~~qrl~la~a 151 (237)
T PRK11614 83 AIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHE-----------RRIQRAGTMSGGEQQMLAIGRA 151 (237)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHH-----------HHhCchhhCCHHHHHHHHHHHH
Confidence 999999999986 9999996421 1122 2233334333 1221 1223446799999999999999
Q ss_pred HccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhh-ccCEEEEEeCcEEEEecChhHHhh
Q 000452 1399 LLKRRKILMLDEATASVDTATDNLIQQSLRQHF-SDCTVITIAHRITSVI-DSDMVLLLSHGLIEEYDSPRKLLE 1471 (1495)
Q Consensus 1399 LLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f-~~~TVI~IAHRl~ti~-~~DrIlVL~~G~ivE~gsp~~Ll~ 1471 (1495)
++++|+||||||||++||+.+...+.+.|++.. +++|||+++|+++.+. .||+|++|++|++++.|+++++.+
T Consensus 152 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 152 LMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred HHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 999999999999999999999999999998764 4799999999999765 599999999999999999999975
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-39 Score=369.80 Aligned_cols=218 Identities=24% Similarity=0.394 Sum_probs=195.5
Q ss_pred ceEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhccc
Q 000452 1246 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRL 1325 (1495)
Q Consensus 1246 g~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i 1325 (1495)
..|+++||+.+|. ...+++|||++|++||.+.++||||||||||+++|.||..|++|+|.+||.||..++.+ ++.|
T Consensus 4 ~~l~i~~v~k~yg--~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~i 79 (352)
T COG3842 4 PALEIRNVSKSFG--DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRPI 79 (352)
T ss_pred ceEEEEeeeeecC--CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hccc
Confidence 4699999999998 34699999999999999999999999999999999999999999999999999998887 5789
Q ss_pred EEEcccCcCCCC-cHHHhcCCC-C---CCCH----HHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHH
Q 000452 1326 SIIPQDPVMFEG-TVRSNVDPL-E---EYTD----EQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLG 1396 (1495)
Q Consensus 1326 siIpQdp~LF~G-TIR~NLdp~-~---~~sd----~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LA 1396 (1495)
++|+|+..||+- ||++|+.+. . ...+ +.+.++|+.++|.++-.+.|. .|||||+||++||
T Consensus 80 g~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~-----------qLSGGQqQRVALA 148 (352)
T COG3842 80 GMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPH-----------QLSGGQQQRVALA 148 (352)
T ss_pred ceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChh-----------hhChHHHHHHHHH
Confidence 999999999977 999998632 2 1233 368999999999998777764 5799999999999
Q ss_pred HHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCchh-hhccCEEEEEeCcEEEEecChhHHhhcC
Q 000452 1397 RVLLKRRKILMLDEATASVDTATDNLIQQSLRQHF--SDCTVITIAHRITS-VIDSDMVLLLSHGLIEEYDSPRKLLENK 1473 (1495)
Q Consensus 1397 RALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f--~~~TVI~IAHRl~t-i~~~DrIlVL~~G~ivE~gsp~~Ll~~~ 1473 (1495)
|||..+|++|+||||-|+||.+-...+|.-+++.. .+.|.|.|||+.+. +.-+|||.||++|+|...|+|+|+..++
T Consensus 149 RAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P 228 (352)
T COG3842 149 RALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERP 228 (352)
T ss_pred HHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCc
Confidence 99999999999999999999999998888887654 37899999999876 4569999999999999999999999988
Q ss_pred CChHH
Q 000452 1474 SSSFS 1478 (1495)
Q Consensus 1474 ~s~f~ 1478 (1495)
.+.|-
T Consensus 229 ~~~fV 233 (352)
T COG3842 229 ATRFV 233 (352)
T ss_pred chHHH
Confidence 77663
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=343.14 Aligned_cols=172 Identities=32% Similarity=0.563 Sum_probs=162.8
Q ss_pred EEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccEE
Q 000452 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSI 1327 (1495)
Q Consensus 1248 I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~isi 1327 (1495)
|+++|++++|+.+..++++|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+...+|++++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 57899999997544569999999999999999999999999999999999999999999999999999998899999999
Q ss_pred EcccCcCCCCcHHHhcCCCCCCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCeEE
Q 000452 1328 IPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILM 1407 (1495)
Q Consensus 1328 IpQdp~LF~GTIR~NLdp~~~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALLr~~~ILi 1407 (1495)
+||+|.+|++|+++|+ ||+|||||++||||++++|++||
T Consensus 81 ~~q~~~~~~~tv~~~l-----------------------------------------LS~G~~qrv~la~al~~~p~~ll 119 (173)
T cd03246 81 LPQDDELFSGSIAENI-----------------------------------------LSGGQRQRLGLARALYGNPRILV 119 (173)
T ss_pred ECCCCccccCcHHHHC-----------------------------------------cCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999998 89999999999999999999999
Q ss_pred EEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhccCEEEEEeCcEE
Q 000452 1408 LDEATASVDTATDNLIQQSLRQHF-SDCTVITIAHRITSVIDSDMVLLLSHGLI 1460 (1495)
Q Consensus 1408 LDEaTsslD~~Td~~Iq~~Ir~~f-~~~TVI~IAHRl~ti~~~DrIlVL~~G~i 1460 (1495)
|||||++||+.+...+.+.|++.. +++|+|+++|+++.+..||+|++|++|++
T Consensus 120 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 120 LDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 999999999999999999998864 47899999999999988999999999974
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=370.98 Aligned_cols=217 Identities=26% Similarity=0.357 Sum_probs=183.3
Q ss_pred cceEEEeeeeEEeCCCC---CcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCC----C-
Q 000452 1245 HGKIDLRDLQVRYAPHM---PFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISL----I- 1316 (1495)
Q Consensus 1245 ~g~I~f~nv~~~Y~~~~---~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~----i- 1316 (1495)
.|.|+++|++++|+... .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++.. +
T Consensus 4 ~~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 83 (289)
T PRK13645 4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIK 83 (289)
T ss_pred cceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccc
Confidence 46899999999996532 259999999999999999999999999999999999999999999999999853 2
Q ss_pred CHHHHhcccEEEcccC--cCCCCcHHHhcCCCC---CCCHH----HHHHHHHHcCCc-HHHHhccCCcccccccCCCCCC
Q 000452 1317 GLHDLRTRLSIIPQDP--VMFEGTVRSNVDPLE---EYTDE----QIWEALDKCQLG-DEVRKKEGKLDSKVTENGENWS 1386 (1495)
Q Consensus 1317 ~l~~LR~~isiIpQdp--~LF~GTIR~NLdp~~---~~sd~----ei~~aL~~~~L~-~~v~~lp~gLdt~v~e~G~nLS 1386 (1495)
+...+|++++|+||+| .+|.+|+++|+.... ..+.+ .+.++++..++. +. .......||
T Consensus 84 ~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~-----------~~~~~~~LS 152 (289)
T PRK13645 84 EVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDY-----------VKRSPFELS 152 (289)
T ss_pred cHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhH-----------hcCChhhCC
Confidence 4567889999999998 478889999996321 22332 344556666653 22 123446799
Q ss_pred chHHHHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecCchhhh-ccCEEEEEeCcEEEEe
Q 000452 1387 MGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFS--DCTVITIAHRITSVI-DSDMVLLLSHGLIEEY 1463 (1495)
Q Consensus 1387 ~GQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~--~~TVI~IAHRl~ti~-~~DrIlVL~~G~ivE~ 1463 (1495)
+|||||++|||||+++|++|||||||++||+.+...+.+.|++..+ ++|||+|+|+++.+. .||+|++|++|++++.
T Consensus 153 ~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~ 232 (289)
T PRK13645 153 GGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISI 232 (289)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999988753 789999999999875 5999999999999999
Q ss_pred cChhHHhhc
Q 000452 1464 DSPRKLLEN 1472 (1495)
Q Consensus 1464 gsp~~Ll~~ 1472 (1495)
|++++++++
T Consensus 233 g~~~~~~~~ 241 (289)
T PRK13645 233 GSPFEIFSN 241 (289)
T ss_pred CCHHHHhcC
Confidence 999988753
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-38 Score=372.68 Aligned_cols=226 Identities=25% Similarity=0.358 Sum_probs=188.9
Q ss_pred eEEEeeeeEEeCC--CCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCC---ccEEEEcCEeCCCCCHHHH
Q 000452 1247 KIDLRDLQVRYAP--HMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPA---AGQILIDGIDISLIGLHDL 1321 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~--~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~---~G~I~IDG~dI~~i~l~~L 1321 (1495)
.++++|++++|+. +...+|+||||+|++||++||||+||||||||+++|+|+++|. +|+|.+||.|+.+++.+++
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 5999999999963 2246999999999999999999999999999999999999996 9999999999999987776
Q ss_pred h----cccEEEcccC--cCCC-CcHHHhcC----CCCCCCH----HHHHHHHHHcCCcHHHHhccCCcccccccCCCCCC
Q 000452 1322 R----TRLSIIPQDP--VMFE-GTVRSNVD----PLEEYTD----EQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWS 1386 (1495)
Q Consensus 1322 R----~~isiIpQdp--~LF~-GTIR~NLd----p~~~~sd----~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS 1386 (1495)
| ++|+|||||| .++. -|+.+|+. .....+. +++.++|+.+++.+ +. ..+...+..||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~-------~~-~~~~~~p~~LS 163 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPE-------AR-KRMKMYPHEFS 163 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-------hH-HHhcCCcccCC
Confidence 4 4799999999 4555 37777762 2222232 34566777777642 11 11344567899
Q ss_pred chHHHHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecCchhhh-ccCEEEEEeCcEEEEe
Q 000452 1387 MGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFS--DCTVITIAHRITSVI-DSDMVLLLSHGLIEEY 1463 (1495)
Q Consensus 1387 ~GQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~--~~TVI~IAHRl~ti~-~~DrIlVL~~G~ivE~ 1463 (1495)
||||||++|||||+.+|++||+||||++||..+...|.+.|++..+ +.|+|+|||+++.+. -||+|+||++|+|+|.
T Consensus 164 gG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~ 243 (330)
T PRK09473 164 GGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEY 243 (330)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999987654 789999999999997 4999999999999999
Q ss_pred cChhHHhhcCCChHHHH
Q 000452 1464 DSPRKLLENKSSSFSQL 1480 (1495)
Q Consensus 1464 gsp~~Ll~~~~s~f~~l 1480 (1495)
|+++++++++...|.+.
T Consensus 244 g~~~~i~~~p~~pyt~~ 260 (330)
T PRK09473 244 GNARDVFYQPSHPYSIG 260 (330)
T ss_pred CCHHHHHhCCCCHHHHH
Confidence 99999998766555553
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-38 Score=368.27 Aligned_cols=215 Identities=30% Similarity=0.432 Sum_probs=184.0
Q ss_pred eEEEeeeeEEeCCCC---CcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCC----CHH
Q 000452 1247 KIDLRDLQVRYAPHM---PFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLI----GLH 1319 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~~---~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i----~l~ 1319 (1495)
.|+++|++++|++.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 478999999997432 3599999999999999999999999999999999999999999999999998754 245
Q ss_pred HHhcccEEEcccC--cCCCCcHHHhcCCC---CCCC----HHHHHHHHHHcCCc-HHHHhccCCcccccccCCCCCCchH
Q 000452 1320 DLRTRLSIIPQDP--VMFEGTVRSNVDPL---EEYT----DEQIWEALDKCQLG-DEVRKKEGKLDSKVTENGENWSMGQ 1389 (1495)
Q Consensus 1320 ~LR~~isiIpQdp--~LF~GTIR~NLdp~---~~~s----d~ei~~aL~~~~L~-~~v~~lp~gLdt~v~e~G~nLS~GQ 1389 (1495)
..|++++|+||+| .+|..|+++|+... ...+ ++.+.++++.+++. +... ....+||+||
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-----------~~~~~LSgGq 150 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLIS-----------KSPFELSGGQ 150 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhh-----------CCcccCCHHH
Confidence 6788999999998 58888999999521 1222 23456778888775 3322 2245799999
Q ss_pred HHHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhh-ccCEEEEEeCcEEEEecChh
Q 000452 1390 RQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHF-SDCTVITIAHRITSVI-DSDMVLLLSHGLIEEYDSPR 1467 (1495)
Q Consensus 1390 rQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f-~~~TVI~IAHRl~ti~-~~DrIlVL~~G~ivE~gsp~ 1467 (1495)
|||++|||||+.+|++|||||||++||+.+...+.+.|++.. .+.|||++||+++.+. -||+|++|++|++++.|+++
T Consensus 151 ~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 230 (287)
T PRK13641 151 MRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPK 230 (287)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999864 4789999999999886 59999999999999999999
Q ss_pred HHhhc
Q 000452 1468 KLLEN 1472 (1495)
Q Consensus 1468 ~Ll~~ 1472 (1495)
+++++
T Consensus 231 ~~~~~ 235 (287)
T PRK13641 231 EIFSD 235 (287)
T ss_pred HHhcC
Confidence 98753
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=353.28 Aligned_cols=200 Identities=28% Similarity=0.399 Sum_probs=175.7
Q ss_pred EEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccEE
Q 000452 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSI 1327 (1495)
Q Consensus 1248 I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~isi 1327 (1495)
|+++|++++|+.. . .|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++...+. .|++++|
T Consensus 1 i~~~~l~~~~~~~--~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 74 (211)
T cd03298 1 VRLDKIRFSYGEQ--P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVSM 74 (211)
T ss_pred CEEEeEEEEeCCE--e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEEE
Confidence 5789999999642 2 39999999999999999999999999999999999999999999999987653 4678999
Q ss_pred EcccCcCCCC-cHHHhcCCC-C---C---CCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHH
Q 000452 1328 IPQDPVMFEG-TVRSNVDPL-E---E---YTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVL 1399 (1495)
Q Consensus 1328 IpQdp~LF~G-TIR~NLdp~-~---~---~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAL 1399 (1495)
+||+|.+|.+ |+++|+... . . .+++++.++++.+++.+.....| .+||+|||||++||||+
T Consensus 75 ~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~ia~al 143 (211)
T cd03298 75 LFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLP-----------GELSGGERQRVALARVL 143 (211)
T ss_pred EecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCc-----------ccCCHHHHHHHHHHHHH
Confidence 9999999986 999999632 1 1 23557889999999876665544 36899999999999999
Q ss_pred ccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCchhhhc-cCEEEEEeCcEEEEec
Q 000452 1400 LKRRKILMLDEATASVDTATDNLIQQSLRQHF--SDCTVITIAHRITSVID-SDMVLLLSHGLIEEYD 1464 (1495)
Q Consensus 1400 Lr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f--~~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~g 1464 (1495)
+++|++|||||||++||.++...+.+.|++.. .++|+|+|+|+++.+.. ||+|++|++|++++.|
T Consensus 144 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 144 VRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 99999999999999999999999999999875 37899999999999866 9999999999998864
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-38 Score=358.28 Aligned_cols=210 Identities=25% Similarity=0.410 Sum_probs=184.5
Q ss_pred EEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccEE
Q 000452 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSI 1327 (1495)
Q Consensus 1248 I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~isi 1327 (1495)
|+++|++++|+. +++|+|+||+|.+||++||+|++|||||||+++|.|+++|++|+|.+||.++...+. .|++++|
T Consensus 1 i~i~~l~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~~ 76 (237)
T TIGR00968 1 IEIANISKRFGS--FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIGF 76 (237)
T ss_pred CEEEEEEEEECC--eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEEE
Confidence 578999999974 359999999999999999999999999999999999999999999999999987653 4788999
Q ss_pred EcccCcCCCC-cHHHhcCCCC---CC----CHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHH
Q 000452 1328 IPQDPVMFEG-TVRSNVDPLE---EY----TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVL 1399 (1495)
Q Consensus 1328 IpQdp~LF~G-TIR~NLdp~~---~~----sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAL 1399 (1495)
+||+|.+|.+ |+++|+.... .. .++++.+++++.++.+...+. ..+||+||+||++||||+
T Consensus 77 ~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~lS~G~~qrl~laral 145 (237)
T TIGR00968 77 VFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRY-----------PNQLSGGQRQRVALARAL 145 (237)
T ss_pred EecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCC-----------hhhCCHHHHHHHHHHHHH
Confidence 9999999976 9999996321 11 235677888888886554433 257999999999999999
Q ss_pred ccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecCchhhhc-cCEEEEEeCcEEEEecChhHHhhc
Q 000452 1400 LKRRKILMLDEATASVDTATDNLIQQSLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLEN 1472 (1495)
Q Consensus 1400 Lr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~Ll~~ 1472 (1495)
+++|++++|||||++||.++.+.+.+.|++..+ ++|||+++|+++.+.. ||+|++|++|+++|.|+++++++.
T Consensus 146 ~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~ 221 (237)
T TIGR00968 146 AVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDH 221 (237)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHcC
Confidence 999999999999999999999999999998654 6999999999999865 999999999999999999999854
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=365.30 Aligned_cols=213 Identities=23% Similarity=0.357 Sum_probs=188.8
Q ss_pred ceEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhccc
Q 000452 1246 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRL 1325 (1495)
Q Consensus 1246 g~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i 1325 (1495)
-.|+++||+++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+++
T Consensus 6 ~~l~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (265)
T PRK10253 6 ARLRGEQLTLGYGK--YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRI 83 (265)
T ss_pred cEEEEEEEEEEECC--EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 46999999999974 3599999999999999999999999999999999999999999999999999988888889999
Q ss_pred EEEcccCcCCC-CcHHHhcCCCC-----------CCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHH
Q 000452 1326 SIIPQDPVMFE-GTVRSNVDPLE-----------EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLV 1393 (1495)
Q Consensus 1326 siIpQdp~LF~-GTIR~NLdp~~-----------~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl 1393 (1495)
+|+||+|.+|. .|+++|+.... +..++++.++++..++.+...+ ....||+|||||+
T Consensus 84 ~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~Gq~qrv 152 (265)
T PRK10253 84 GLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQ-----------SVDTLSGGQRQRA 152 (265)
T ss_pred EEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcC-----------CcccCChHHHHHH
Confidence 99999998875 59999996421 1123467888888888655433 3457999999999
Q ss_pred HHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecCchhhhc-cCEEEEEeCcEEEEecChhHHh
Q 000452 1394 CLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLL 1470 (1495)
Q Consensus 1394 ~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~Ll 1470 (1495)
+||||++++|++|+|||||++||+++...+.+.|++..+ ++|||+++|+++.+.. ||+|++|++|++++.|+++++.
T Consensus 153 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (265)
T PRK10253 153 WIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIV 232 (265)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999988643 7899999999998865 9999999999999999999987
Q ss_pred h
Q 000452 1471 E 1471 (1495)
Q Consensus 1471 ~ 1471 (1495)
.
T Consensus 233 ~ 233 (265)
T PRK10253 233 T 233 (265)
T ss_pred h
Confidence 5
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=358.79 Aligned_cols=210 Identities=25% Similarity=0.417 Sum_probs=185.4
Q ss_pred EEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccEE
Q 000452 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSI 1327 (1495)
Q Consensus 1248 I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~isi 1327 (1495)
|+++|++++|.. + +|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .|+++++
T Consensus 1 l~~~~l~~~~~~--~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~~ 75 (235)
T cd03299 1 LKVENLSKDWKE--F-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDISY 75 (235)
T ss_pred CeeEeEEEEeCC--c-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEEE
Confidence 578999999964 3 8999999999999999999999999999999999999999999999999987654 3789999
Q ss_pred EcccCcCCC-CcHHHhcCC---CCCC----CHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHH
Q 000452 1328 IPQDPVMFE-GTVRSNVDP---LEEY----TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVL 1399 (1495)
Q Consensus 1328 IpQdp~LF~-GTIR~NLdp---~~~~----sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAL 1399 (1495)
+||++.+|. .|+++|+.. .... .++++.++++.+++.+.+...+ .+||+|||||++||||+
T Consensus 76 ~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~laral 144 (235)
T cd03299 76 VPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKP-----------ETLSGGEQQRVAIARAL 144 (235)
T ss_pred EeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCc-----------ccCCHHHHHHHHHHHHH
Confidence 999999995 699999962 1111 2346788899999877665443 46999999999999999
Q ss_pred ccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecCchhhhc-cCEEEEEeCcEEEEecChhHHhhcC
Q 000452 1400 LKRRKILMLDEATASVDTATDNLIQQSLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLENK 1473 (1495)
Q Consensus 1400 Lr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~Ll~~~ 1473 (1495)
+++|++++|||||++||..+.+.+.+.|++..+ ++|+|+++|+++.+.+ ||+|++|++|++++.|+++++.+.+
T Consensus 145 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 221 (235)
T cd03299 145 VVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKKP 221 (235)
T ss_pred HcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhCc
Confidence 999999999999999999999999999998653 7999999999999876 9999999999999999999998654
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=356.73 Aligned_cols=206 Identities=21% Similarity=0.300 Sum_probs=180.1
Q ss_pred eEEEeeeeEEeCCCC--CcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHH---H
Q 000452 1247 KIDLRDLQVRYAPHM--PFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHD---L 1321 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~~--~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~---L 1321 (1495)
.|+++|++++|+.+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+..+ .
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 599999999997532 25999999999999999999999999999999999999999999999999998887654 3
Q ss_pred -hcccEEEcccCcCCCC-cHHHhcCCC---CCC----CHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHH
Q 000452 1322 -RTRLSIIPQDPVMFEG-TVRSNVDPL---EEY----TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQL 1392 (1495)
Q Consensus 1322 -R~~isiIpQdp~LF~G-TIR~NLdp~---~~~----sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQr 1392 (1495)
+++++|+||+|.+|.+ |+++|+... ... ..+++.++++.+++.+.....| ..||+|||||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Ge~qr 154 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLP-----------AQLSGGEQQR 154 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCh-----------hhCCHHHHHH
Confidence 3679999999999886 999998631 111 2356788899999876655443 3689999999
Q ss_pred HHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecCchhhhccCEEEEEeCcEEEEe
Q 000452 1393 VCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFS--DCTVITIAHRITSVIDSDMVLLLSHGLIEEY 1463 (1495)
Q Consensus 1393 l~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~--~~TVI~IAHRl~ti~~~DrIlVL~~G~ivE~ 1463 (1495)
++|||||+++|++|||||||++||+.+...+.+.|++..+ ++|||+|+|+++.+..||+|++|++|+++|.
T Consensus 155 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 9999999999999999999999999999999999988642 7899999999999988999999999999874
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-38 Score=359.97 Aligned_cols=218 Identities=26% Similarity=0.443 Sum_probs=188.7
Q ss_pred eEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccC-----CccEEEEcCEeCC-CCCHHH
Q 000452 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEP-----AAGQILIDGIDIS-LIGLHD 1320 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep-----~~G~I~IDG~dI~-~i~l~~ 1320 (1495)
.++++|++++|+. ..+|+|+||+|++||.+||+|++|||||||+++|.|+++| .+|+|.+||.++. ..+...
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 80 (249)
T PRK14253 3 KFNIENLDLFYGE--NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVAD 80 (249)
T ss_pred eEEEeccEEEECC--eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHH
Confidence 4899999999964 4599999999999999999999999999999999999986 5999999999986 455677
Q ss_pred HhcccEEEcccCcCCCCcHHHhcCCC---CCC-C----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHH
Q 000452 1321 LRTRLSIIPQDPVMFEGTVRSNVDPL---EEY-T----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQL 1392 (1495)
Q Consensus 1321 LR~~isiIpQdp~LF~GTIR~NLdp~---~~~-s----d~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQr 1392 (1495)
+|+.++|+||+|.+|.+|+++|+... ... + ++++.++++.+++.+.+. .........||+|||||
T Consensus 81 ~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~LS~G~~qr 153 (249)
T PRK14253 81 LRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVK-------DRLKSHAFGLSGGQQQR 153 (249)
T ss_pred HHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhh-------HHhhcCcccCCHHHHHH
Confidence 89999999999999999999999632 111 1 234567788888765442 12233456899999999
Q ss_pred HHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-cCEEEEEeCcEEEEecChhHHhh
Q 000452 1393 VCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLE 1471 (1495)
Q Consensus 1393 l~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~Ll~ 1471 (1495)
++|||||+.+|+||||||||++||..+...+.+.|++..+++|||+|+|+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 154 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 233 (249)
T PRK14253 154 LCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFS 233 (249)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 99999999999999999999999999999999999998777999999999999876 99999999999999999999875
Q ss_pred cC
Q 000452 1472 NK 1473 (1495)
Q Consensus 1472 ~~ 1473 (1495)
++
T Consensus 234 ~~ 235 (249)
T PRK14253 234 NP 235 (249)
T ss_pred CC
Confidence 43
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-38 Score=362.53 Aligned_cols=221 Identities=26% Similarity=0.432 Sum_probs=190.5
Q ss_pred ceEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCC-----ccEEEEcCEeCCC--CCH
Q 000452 1246 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPA-----AGQILIDGIDISL--IGL 1318 (1495)
Q Consensus 1246 g~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~-----~G~I~IDG~dI~~--i~l 1318 (1495)
+.|+++|++++|+. +.+|+|+||+|++||.+||+|++|||||||+++|.|+++|+ +|+|.+||.|++. .+.
T Consensus 6 ~~l~~~nl~~~~~~--~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~ 83 (261)
T PRK14258 6 PAIKVNNLSFYYDT--QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNL 83 (261)
T ss_pred ceEEEeeEEEEeCC--eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccch
Confidence 46999999999964 35999999999999999999999999999999999999985 8999999999853 345
Q ss_pred HHHhcccEEEcccCcCCCCcHHHhcCCC---CCC-C----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHH
Q 000452 1319 HDLRTRLSIIPQDPVMFEGTVRSNVDPL---EEY-T----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQR 1390 (1495)
Q Consensus 1319 ~~LR~~isiIpQdp~LF~GTIR~NLdp~---~~~-s----d~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQr 1390 (1495)
..+|+.++|+||++.+|..|+++|+... ... + ++++.++++.+++.+++..+ ....+..||+|||
T Consensus 84 ~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~~~LSgGq~ 156 (261)
T PRK14258 84 NRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHK-------IHKSALDLSGGQQ 156 (261)
T ss_pred HHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhH-------hcCCcccCCHHHH
Confidence 6788999999999999999999999631 111 2 34567788888887655432 2345568999999
Q ss_pred HHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCchhhhc-cCEEEEEeC-----cEEEE
Q 000452 1391 QLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHF--SDCTVITIAHRITSVID-SDMVLLLSH-----GLIEE 1462 (1495)
Q Consensus 1391 Qrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f--~~~TVI~IAHRl~ti~~-~DrIlVL~~-----G~ivE 1462 (1495)
||++|||||+++|+||||||||+++|.++...+.+.|++.. .++|+|+|||+++.+.. ||+|++|++ |++++
T Consensus 157 qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~ 236 (261)
T PRK14258 157 QRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVE 236 (261)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEE
Confidence 99999999999999999999999999999999999998743 47999999999999865 899999999 99999
Q ss_pred ecChhHHhhcCCC
Q 000452 1463 YDSPRKLLENKSS 1475 (1495)
Q Consensus 1463 ~gsp~~Ll~~~~s 1475 (1495)
.|+|+++.+++..
T Consensus 237 ~~~~~~~~~~~~~ 249 (261)
T PRK14258 237 FGLTKKIFNSPHD 249 (261)
T ss_pred eCCHHHHHhCCCC
Confidence 9999999876554
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-38 Score=360.66 Aligned_cols=203 Identities=27% Similarity=0.388 Sum_probs=179.3
Q ss_pred eEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccE
Q 000452 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLS 1326 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~is 1326 (1495)
.|+++|++++|.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. .+|++++
T Consensus 12 ~l~i~~l~~~~~~--~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i~ 84 (257)
T PRK11247 12 PLLLNAVSKRYGE--RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDTR 84 (257)
T ss_pred cEEEEEEEEEECC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCceE
Confidence 5999999999964 35999999999999999999999999999999999999999999999998763 5688999
Q ss_pred EEcccCcCCC-CcHHHhcCCC-CCCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCC
Q 000452 1327 IIPQDPVMFE-GTVRSNVDPL-EEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRK 1404 (1495)
Q Consensus 1327 iIpQdp~LF~-GTIR~NLdp~-~~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALLr~~~ 1404 (1495)
|+||+|.+|. .|+++|+... ....++++.++++..++.+...+. ..+||||||||++|||||+++|+
T Consensus 85 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LSgGqkqrl~laraL~~~p~ 153 (257)
T PRK11247 85 LMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEW-----------PAALSGGQKQRVALARALIHRPG 153 (257)
T ss_pred EEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcCC-----------hhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999987 5999999742 222356788899999887654332 35799999999999999999999
Q ss_pred eEEEEcCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCchhhhc-cCEEEEEeCcEEEEecChh
Q 000452 1405 ILMLDEATASVDTATDNLIQQSLRQHF--SDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPR 1467 (1495)
Q Consensus 1405 ILiLDEaTsslD~~Td~~Iq~~Ir~~f--~~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~ 1467 (1495)
+|||||||++||+.+...+.+.|++.. .++|||+|+|+++.+.. ||+|++|++|++++.++.+
T Consensus 154 lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 154 LLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 999999999999999999999998864 37899999999998754 9999999999999988754
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=365.89 Aligned_cols=213 Identities=27% Similarity=0.415 Sum_probs=184.6
Q ss_pred EEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCC--CCHHHHhccc
Q 000452 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISL--IGLHDLRTRL 1325 (1495)
Q Consensus 1248 I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~--i~l~~LR~~i 1325 (1495)
|+++|++++|+.+ +++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.. .+...+|+++
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 80 (275)
T PRK13639 2 LETRDLKYSYPDG-TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTV 80 (275)
T ss_pred EEEEEEEEEeCCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhhe
Confidence 7899999999633 459999999999999999999999999999999999999999999999999852 2345688999
Q ss_pred EEEcccC--cCCCCcHHHhcCCCC---CCC----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHH
Q 000452 1326 SIIPQDP--VMFEGTVRSNVDPLE---EYT----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLG 1396 (1495)
Q Consensus 1326 siIpQdp--~LF~GTIR~NLdp~~---~~s----d~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LA 1396 (1495)
+|+||+| .+|..|+++|+.... ..+ .+++.++++.+++.++.... ...||+|||||++||
T Consensus 81 ~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-----------~~~LS~Gq~qrv~la 149 (275)
T PRK13639 81 GIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKP-----------PHHLSGGQKKRVAIA 149 (275)
T ss_pred EEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCC-----------hhhCCHHHHHHHHHH
Confidence 9999998 578899999995211 122 24577888888886543322 347999999999999
Q ss_pred HHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-cCEEEEEeCcEEEEecChhHHhhc
Q 000452 1397 RVLLKRRKILMLDEATASVDTATDNLIQQSLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLEN 1472 (1495)
Q Consensus 1397 RALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~Ll~~ 1472 (1495)
||++++|++|||||||++||+.+...+.+.|++.. .++|||+|+|+++.+.. ||+|++|++|++++.|+++++++.
T Consensus 150 ral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 150 GILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999999875 37899999999999875 999999999999999999998753
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-38 Score=369.86 Aligned_cols=220 Identities=29% Similarity=0.515 Sum_probs=190.7
Q ss_pred cceEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccc-----CCccEEEEcCEeCCCC--C
Q 000452 1245 HGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVE-----PAAGQILIDGIDISLI--G 1317 (1495)
Q Consensus 1245 ~g~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~e-----p~~G~I~IDG~dI~~i--~ 1317 (1495)
...|+++|++++|.. .++|+|+||+|++||++||+|++|||||||+++|+|+++ |++|+|.+||.++... +
T Consensus 43 ~~~l~i~nl~~~~~~--~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~ 120 (305)
T PRK14264 43 DAKLSVEDLDVYYGD--DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 (305)
T ss_pred CceEEEEEEEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 446999999999965 359999999999999999999999999999999999986 6899999999998753 4
Q ss_pred HHHHhcccEEEcccCcCCCCcHHHhcCCC-C-------------------CCCHHHHHHHHHHcCCcHHHHhccCCcccc
Q 000452 1318 LHDLRTRLSIIPQDPVMFEGTVRSNVDPL-E-------------------EYTDEQIWEALDKCQLGDEVRKKEGKLDSK 1377 (1495)
Q Consensus 1318 l~~LR~~isiIpQdp~LF~GTIR~NLdp~-~-------------------~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~ 1377 (1495)
...+|++++|+||++.+|.+|+++|+... . +..++++.++++.+++.+.+. ..
T Consensus 121 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~ 193 (305)
T PRK14264 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVN-------DR 193 (305)
T ss_pred HHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhh-------HH
Confidence 66788999999999999999999999631 0 012456788888888754432 23
Q ss_pred cccCCCCCCchHHHHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-cCEE-EEE
Q 000452 1378 VTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVID-SDMV-LLL 1455 (1495)
Q Consensus 1378 v~e~G~nLS~GQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~~-~DrI-lVL 1455 (1495)
....+.+||+|||||++|||||+++|+||||||||++||+.+...+.+.|++..++.|||+|+|+++.+.. ||+| ++|
T Consensus 194 ~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l 273 (305)
T PRK14264 194 LDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFL 273 (305)
T ss_pred hcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEe
Confidence 34556789999999999999999999999999999999999999999999998777899999999999875 9997 578
Q ss_pred eCcEEEEecChhHHhhcC
Q 000452 1456 SHGLIEEYDSPRKLLENK 1473 (1495)
Q Consensus 1456 ~~G~ivE~gsp~~Ll~~~ 1473 (1495)
++|++++.|+++++++.+
T Consensus 274 ~~G~i~~~g~~~~~~~~~ 291 (305)
T PRK14264 274 TGGELVEYDDTDKIFENP 291 (305)
T ss_pred cCCEEEEeCCHHHHHhCc
Confidence 999999999999998653
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-38 Score=361.28 Aligned_cols=219 Identities=23% Similarity=0.355 Sum_probs=191.3
Q ss_pred eEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccC-----CccEEEEcCEeCCCC--CHH
Q 000452 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEP-----AAGQILIDGIDISLI--GLH 1319 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep-----~~G~I~IDG~dI~~i--~l~ 1319 (1495)
.+.+++.+++|.. .++|+|+||+|++||++||+|++|||||||+++|.|+++| .+|+|.+||.|+... ...
T Consensus 8 ~~~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 85 (261)
T PRK14263 8 VMDCKLDKIFYGN--FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPV 85 (261)
T ss_pred eEEEEeEEEEeCC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchH
Confidence 4889999999964 3599999999999999999999999999999999999986 799999999998753 445
Q ss_pred HHhcccEEEcccCcCCCCcHHHhcCCCC------CCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHH
Q 000452 1320 DLRTRLSIIPQDPVMFEGTVRSNVDPLE------EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLV 1393 (1495)
Q Consensus 1320 ~LR~~isiIpQdp~LF~GTIR~NLdp~~------~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl 1393 (1495)
.+|++++|+||+|.+|..|+++|+.... ...++++.++++.+++.+.+... ..+...+||+|||||+
T Consensus 86 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~-------~~~~~~~LS~G~~qrv 158 (261)
T PRK14263 86 VVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDK-------LKVSGLSLSGGQQQRL 158 (261)
T ss_pred hhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhh-------hhCCcccCCHHHHHHH
Confidence 6788999999999999999999997421 11235788899999987655432 2345678999999999
Q ss_pred HHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-cCEEEEEe--------CcEEEEec
Q 000452 1394 CLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVID-SDMVLLLS--------HGLIEEYD 1464 (1495)
Q Consensus 1394 ~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~~-~DrIlVL~--------~G~ivE~g 1464 (1495)
+|||||+++|+||+|||||++||+.+...+.+.|++..+++|+|+|+|+++.+.+ ||||++|+ +|++++.|
T Consensus 159 ~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g 238 (261)
T PRK14263 159 CIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMG 238 (261)
T ss_pred HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEeC
Confidence 9999999999999999999999999999999999988777899999999998875 99999996 89999999
Q ss_pred ChhHHhhcCC
Q 000452 1465 SPRKLLENKS 1474 (1495)
Q Consensus 1465 sp~~Ll~~~~ 1474 (1495)
+++++++++.
T Consensus 239 ~~~~~~~~~~ 248 (261)
T PRK14263 239 PTAQIFQNPR 248 (261)
T ss_pred CHHHHHhCCC
Confidence 9999987654
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-38 Score=362.62 Aligned_cols=219 Identities=26% Similarity=0.454 Sum_probs=187.0
Q ss_pred eEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccC-----CccEEEEcCEeCCC--CCHH
Q 000452 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEP-----AAGQILIDGIDISL--IGLH 1319 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep-----~~G~I~IDG~dI~~--i~l~ 1319 (1495)
.++++|++++|+.. .+|+|+||+|++||++||+|++|||||||+++|.|+++| ++|+|.+||.++.. .+..
T Consensus 4 ~l~i~~v~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~ 81 (258)
T PRK14241 4 RIDVKDLNIYYGSF--HAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPV 81 (258)
T ss_pred cEEEeeEEEEECCE--eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChH
Confidence 58999999999643 599999999999999999999999999999999999974 69999999999864 4456
Q ss_pred HHhcccEEEcccCcCCCC-cHHHhcCCC----CCCC----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHH
Q 000452 1320 DLRTRLSIIPQDPVMFEG-TVRSNVDPL----EEYT----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQR 1390 (1495)
Q Consensus 1320 ~LR~~isiIpQdp~LF~G-TIR~NLdp~----~~~s----d~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQr 1390 (1495)
.+|+.++++||++.+|.. |+++|+... +..+ ++++.++++.+++.+.+.. .......+||+|||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~ 154 (258)
T PRK14241 82 AVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKD-------RLDKPGGGLSGGQQ 154 (258)
T ss_pred HHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhh-------HhhCCcccCCHHHH
Confidence 788999999999999974 999998521 1111 3456778888887644321 22334568999999
Q ss_pred HHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhh-ccCEEEEEe------CcEEEEe
Q 000452 1391 QLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVI-DSDMVLLLS------HGLIEEY 1463 (1495)
Q Consensus 1391 Qrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~-~~DrIlVL~------~G~ivE~ 1463 (1495)
||++||||++++|++|||||||++||+.+...+.+.|++..+++|||+|+|+++.+. .||+|++|+ +|+|++.
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~ 234 (258)
T PRK14241 155 QRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEI 234 (258)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEec
Confidence 999999999999999999999999999999999999998766799999999999986 499999997 8999999
Q ss_pred cChhHHhhcCC
Q 000452 1464 DSPRKLLENKS 1474 (1495)
Q Consensus 1464 gsp~~Ll~~~~ 1474 (1495)
|+++++++++.
T Consensus 235 ~~~~~~~~~~~ 245 (258)
T PRK14241 235 DDTEKIFSNPT 245 (258)
T ss_pred CCHHHHHhCcC
Confidence 99999986543
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-38 Score=358.62 Aligned_cols=213 Identities=25% Similarity=0.408 Sum_probs=182.3
Q ss_pred eEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHH-Hhccc
Q 000452 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHD-LRTRL 1325 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~-LR~~i 1325 (1495)
.|+++|++++|+. .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++...+..+ .|+++
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (241)
T PRK10895 3 TLTAKNLAKAYKG--RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGI 80 (241)
T ss_pred eEEEeCcEEEeCC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCe
Confidence 4889999999964 35999999999999999999999999999999999999999999999999998877644 57889
Q ss_pred EEEcccCcCCCC-cHHHhcCCCC----CCC----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHH
Q 000452 1326 SIIPQDPVMFEG-TVRSNVDPLE----EYT----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLG 1396 (1495)
Q Consensus 1326 siIpQdp~LF~G-TIR~NLdp~~----~~s----d~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LA 1396 (1495)
+|+||+|.+|.+ |+++|+.... ..+ ++.+.+.++..++.+. .......||+|||||++||
T Consensus 81 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~la 149 (241)
T PRK10895 81 GYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHL-----------RDSMGQSLSGGERRRVEIA 149 (241)
T ss_pred EEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHH-----------hhcchhhCCHHHHHHHHHH
Confidence 999999999885 9999997431 122 2235555665555432 3334567999999999999
Q ss_pred HHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhh-ccCEEEEEeCcEEEEecChhHHhhc
Q 000452 1397 RVLLKRRKILMLDEATASVDTATDNLIQQSLRQHF-SDCTVITIAHRITSVI-DSDMVLLLSHGLIEEYDSPRKLLEN 1472 (1495)
Q Consensus 1397 RALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f-~~~TVI~IAHRl~ti~-~~DrIlVL~~G~ivE~gsp~~Ll~~ 1472 (1495)
||++++|++|||||||++||+.+...+.+.+++.. .++|+|+++|+++.+. .||+|++|++|++++.|+++++++.
T Consensus 150 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (241)
T PRK10895 150 RALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQD 227 (241)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhcC
Confidence 99999999999999999999999999999988754 4789999999998775 5999999999999999999998753
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-38 Score=362.76 Aligned_cols=220 Identities=21% Similarity=0.402 Sum_probs=189.9
Q ss_pred ceEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccC-----CccEEEEcCEeCCC--CCH
Q 000452 1246 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEP-----AAGQILIDGIDISL--IGL 1318 (1495)
Q Consensus 1246 g~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep-----~~G~I~IDG~dI~~--i~l 1318 (1495)
-.|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. ...
T Consensus 19 ~~l~~~nl~~~~~~--~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~ 96 (274)
T PRK14265 19 SVFEVEGVKVFYGG--FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINS 96 (274)
T ss_pred ceEEEeeEEEEeCC--eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchh
Confidence 36999999999964 3599999999999999999999999999999999999863 59999999999864 344
Q ss_pred HHHhcccEEEcccCcCCCCcHHHhcCCCC---C---CCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHH
Q 000452 1319 HDLRTRLSIIPQDPVMFEGTVRSNVDPLE---E---YTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQL 1392 (1495)
Q Consensus 1319 ~~LR~~isiIpQdp~LF~GTIR~NLdp~~---~---~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQr 1392 (1495)
..+|++++|+||+|.+|.+|+++|+.... . ..++++.++++.+++.+.+... .......||+|||||
T Consensus 97 ~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-------~~~~~~~LSgGq~qr 169 (274)
T PRK14265 97 VKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDK-------LKEKGTALSGGQQQR 169 (274)
T ss_pred HHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHH-------hcCCcccCCHHHHHH
Confidence 56789999999999999999999996421 1 1245567788888886555321 233456899999999
Q ss_pred HHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-cCEEEEEe---------CcEEEE
Q 000452 1393 VCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVID-SDMVLLLS---------HGLIEE 1462 (1495)
Q Consensus 1393 l~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~~-~DrIlVL~---------~G~ivE 1462 (1495)
++|||||+++|+||||||||++||..+...+.+.|++..+++|||+|+|+++.+.. ||+|++|+ +|++++
T Consensus 170 v~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~ 249 (274)
T PRK14265 170 LCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVE 249 (274)
T ss_pred HHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 99999999999999999999999999999999999988778999999999999864 99999997 899999
Q ss_pred ecChhHHhhcCC
Q 000452 1463 YDSPRKLLENKS 1474 (1495)
Q Consensus 1463 ~gsp~~Ll~~~~ 1474 (1495)
.|+++++..++.
T Consensus 250 ~g~~~~~~~~~~ 261 (274)
T PRK14265 250 FSPTEQMFGSPQ 261 (274)
T ss_pred eCCHHHHHhCCC
Confidence 999999986543
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-38 Score=360.82 Aligned_cols=222 Identities=27% Similarity=0.410 Sum_probs=189.2
Q ss_pred eEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccc--C---CccEEEEcCEeCCC--CCHH
Q 000452 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVE--P---AAGQILIDGIDISL--IGLH 1319 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~e--p---~~G~I~IDG~dI~~--i~l~ 1319 (1495)
.|+++||+++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++ | ++|+|.+||.++.. .+..
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14255 5 IITSSDVHLFYGK--FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVV 82 (252)
T ss_pred eEEEEeEEEEECC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHH
Confidence 4899999999974 459999999999999999999999999999999999975 4 58999999999864 3455
Q ss_pred HHhcccEEEcccCcCCCCcHHHhcCCC---CC--C---CHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHH
Q 000452 1320 DLRTRLSIIPQDPVMFEGTVRSNVDPL---EE--Y---TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQ 1391 (1495)
Q Consensus 1320 ~LR~~isiIpQdp~LF~GTIR~NLdp~---~~--~---sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQ 1391 (1495)
.+|++++|+||+|.+|.+|+++|+... .. . .++++.++++.+++.+.+. ........+||+||||
T Consensus 83 ~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LS~Gq~q 155 (252)
T PRK14255 83 QLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVK-------DHLHESALSLSGGQQQ 155 (252)
T ss_pred HhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchh-------hHHhcCcccCCHHHHH
Confidence 678899999999999999999999621 11 1 1345677788887764332 1233445689999999
Q ss_pred HHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-cCEEEEEeCcEEEEecChhHHh
Q 000452 1392 LVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLL 1470 (1495)
Q Consensus 1392 rl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~Ll 1470 (1495)
|++||||++++|+||||||||++||..+...+.+.|++..+++|+|+|+|+++.+.. ||+|++|++|++++.|++.+..
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14255 156 RVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMF 235 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999988767899999999999875 9999999999999999999998
Q ss_pred hcCCChH
Q 000452 1471 ENKSSSF 1477 (1495)
Q Consensus 1471 ~~~~s~f 1477 (1495)
.++...+
T Consensus 236 ~~~~~~~ 242 (252)
T PRK14255 236 LNPKEKE 242 (252)
T ss_pred cCCCChH
Confidence 7654433
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=355.41 Aligned_cols=197 Identities=30% Similarity=0.420 Sum_probs=170.2
Q ss_pred EEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccEEE
Q 000452 1249 DLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSII 1328 (1495)
Q Consensus 1249 ~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~isiI 1328 (1495)
+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. .+|++++|+
T Consensus 1 ~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~v 73 (213)
T cd03235 1 EVEDLTVSYGG--HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGYV 73 (213)
T ss_pred CcccceeEECC--EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEEe
Confidence 46899999964 35999999999999999999999999999999999999999999999998864 578899999
Q ss_pred cccCcC---CCCcHHHhcCCC-CC----------CCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHH
Q 000452 1329 PQDPVM---FEGTVRSNVDPL-EE----------YTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVC 1394 (1495)
Q Consensus 1329 pQdp~L---F~GTIR~NLdp~-~~----------~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~ 1394 (1495)
||+|.+ |+.|+++|+... .. ..++++.++++.+++.+...+. ..+||||||||++
T Consensus 74 ~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrv~ 142 (213)
T cd03235 74 PQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQ-----------IGELSGGQQQRVL 142 (213)
T ss_pred ccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCC-----------cccCCHHHHHHHH
Confidence 999976 668999998632 11 1235678889999887654432 3479999999999
Q ss_pred HHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-cCEEEEEeCcEEEEec
Q 000452 1395 LGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGLIEEYD 1464 (1495)
Q Consensus 1395 LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~g 1464 (1495)
|||||+++|++|||||||++||+++...+.+.|++.. +++|||+|+|+++.+.. ||+|++|++| +++.|
T Consensus 143 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 143 LARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 9999999999999999999999999999999998864 57899999999999876 8999999986 55544
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-38 Score=360.72 Aligned_cols=212 Identities=27% Similarity=0.375 Sum_probs=186.7
Q ss_pred eEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccE
Q 000452 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLS 1326 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~is 1326 (1495)
.|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...++++++
T Consensus 2 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (258)
T PRK13548 2 MLEARNLSVRLGG--RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRA 79 (258)
T ss_pred eEEEEeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheE
Confidence 3789999999964 35999999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEcccCcC-CCCcHHHhcCCCC--C-----CCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHH
Q 000452 1327 IIPQDPVM-FEGTVRSNVDPLE--E-----YTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRV 1398 (1495)
Q Consensus 1327 iIpQdp~L-F~GTIR~NLdp~~--~-----~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARA 1398 (1495)
|+||++.+ +..|+++|+.... . ..++++.++++.+++.+...+. ...||||||||++||||
T Consensus 80 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgGe~qrv~la~a 148 (258)
T PRK13548 80 VLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRD-----------YPQLSGGEQQRVQLARV 148 (258)
T ss_pred EEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCC-----------cccCCHHHHHHHHHHHH
Confidence 99999987 6779999986321 1 1234577888888886544332 35799999999999999
Q ss_pred Hc------cCCCeEEEEcCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCchhhh-ccCEEEEEeCcEEEEecChhHH
Q 000452 1399 LL------KRRKILMLDEATASVDTATDNLIQQSLRQHF--SDCTVITIAHRITSVI-DSDMVLLLSHGLIEEYDSPRKL 1469 (1495)
Q Consensus 1399 LL------r~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f--~~~TVI~IAHRl~ti~-~~DrIlVL~~G~ivE~gsp~~L 1469 (1495)
|+ ++|++|+|||||++||+.+...+.+.|++.. .+.|||+|+|+++.+. .||+|++|++|++++.|+++++
T Consensus 149 l~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (258)
T PRK13548 149 LAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEV 228 (258)
T ss_pred HhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHH
Confidence 99 5999999999999999999999999999864 4789999999999887 5999999999999999999998
Q ss_pred hh
Q 000452 1470 LE 1471 (1495)
Q Consensus 1470 l~ 1471 (1495)
.+
T Consensus 229 ~~ 230 (258)
T PRK13548 229 LT 230 (258)
T ss_pred hC
Confidence 75
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=339.56 Aligned_cols=200 Identities=29% Similarity=0.423 Sum_probs=171.6
Q ss_pred cEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcC---------------
Q 000452 617 AIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG--------------- 681 (1495)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g--------------- 681 (1495)
.|+++|++..|+ +++.+|+||||+|++||+++|+|++||||||||++|.|..+|++|+|.++|
T Consensus 3 ~i~~~nl~k~yp--~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 3 MIEVKNLSKTYP--GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred eEEEeeeeeecC--CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 689999999996 357899999999999999999999999999999999999999999999998
Q ss_pred -eEEEEccCCccc-CccHHHHHhcCCC------------CCHHHHH---HHHHHhCcHHHHhhcCCCCcccccCCCCccc
Q 000452 682 -TKAYVAQSPWIQ-SGKIEDNILFGKE------------MDRERYN---AVLDACSLEKDLEILSFGDQTVVGERGINLS 744 (1495)
Q Consensus 682 -~~ayv~Q~~~l~-~~ti~enI~fg~~------------~~~~~~~---~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LS 744 (1495)
.+||++|++.+- ..|+.+|++.|+- +.++... ++++..++.+.. -.+..+||
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A-----------~qra~~LS 149 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKA-----------YQRASTLS 149 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHH-----------HHHhccCC
Confidence 259999998875 5699999998742 2333333 344555554433 36788999
Q ss_pred hHHHHHHHHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHH-hCCCEEEEEecCCCccc-cCCEEEEEeCCEEEEe
Q 000452 745 GGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL-LNSKTVLYVTHQVEFLP-AADLVLVIKDGKITQA 822 (1495)
Q Consensus 745 GGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~~~~tvIlvTH~~~~l~-~~d~i~~l~~G~i~~~ 822 (1495)
|||+|||+|||||+++|+|+|-|||+++|||.+++++++.+.+.. ..|.|+|+.-|++++.. +||||+-|++|+|++.
T Consensus 150 GGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfD 229 (258)
T COG3638 150 GGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFD 229 (258)
T ss_pred cchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEe
Confidence 999999999999999999999999999999999999997654433 35899999999999975 5999999999999999
Q ss_pred cChHHHH
Q 000452 823 GKYTDVI 829 (1495)
Q Consensus 823 g~~~~l~ 829 (1495)
|+.+|+-
T Consensus 230 g~~~el~ 236 (258)
T COG3638 230 GPASELT 236 (258)
T ss_pred CChhhhh
Confidence 9998853
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=365.95 Aligned_cols=212 Identities=28% Similarity=0.404 Sum_probs=182.9
Q ss_pred EEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCC--CCCHHHHhccc
Q 000452 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDIS--LIGLHDLRTRL 1325 (1495)
Q Consensus 1248 I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~--~i~l~~LR~~i 1325 (1495)
|+++||+++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. +.+...+|+++
T Consensus 2 l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i 79 (271)
T PRK13638 2 LATSDLWFRYQD--EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQV 79 (271)
T ss_pred eEEEEEEEEcCC--cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhhe
Confidence 789999999964 35999999999999999999999999999999999999999999999999985 34456788999
Q ss_pred EEEcccCc--CCCCcHHHhcCCC---CCCCH----HHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHH
Q 000452 1326 SIIPQDPV--MFEGTVRSNVDPL---EEYTD----EQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLG 1396 (1495)
Q Consensus 1326 siIpQdp~--LF~GTIR~NLdp~---~~~sd----~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LA 1396 (1495)
+|+||+|. +|..|+.+|+... ...++ +++.++++.+++.++.. . ...+||||||||++||
T Consensus 80 ~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~----~~~~LSgG~~qrl~la 148 (271)
T PRK13638 80 ATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRH-------Q----PIQCLSHGQKKRVAIA 148 (271)
T ss_pred EEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhc-------C----CchhCCHHHHHHHHHH
Confidence 99999985 6778999998632 11222 34567788888765432 2 2457999999999999
Q ss_pred HHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-cCEEEEEeCcEEEEecChhHHhhc
Q 000452 1397 RVLLKRRKILMLDEATASVDTATDNLIQQSLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLEN 1472 (1495)
Q Consensus 1397 RALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~Ll~~ 1472 (1495)
|||+.+|+||||||||++||+.+...+.+.|++.. +++|||+|+|+++.+.. ||+|++|++|++++.|++++++.+
T Consensus 149 raL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 149 GALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999998864 47899999999999865 999999999999999999998754
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-38 Score=376.05 Aligned_cols=218 Identities=24% Similarity=0.414 Sum_probs=190.3
Q ss_pred ceEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhccc
Q 000452 1246 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRL 1325 (1495)
Q Consensus 1246 g~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i 1325 (1495)
..|+++|++++|.. ..+|+|+||+|++||.++|+|+||||||||+++|.|+.+|++|+|.+||.++.+++. .|+++
T Consensus 18 ~~l~l~~v~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 93 (377)
T PRK11607 18 PLLEIRNLTKSFDG--QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRPI 93 (377)
T ss_pred ceEEEEeEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCCE
Confidence 36999999999964 359999999999999999999999999999999999999999999999999987764 47789
Q ss_pred EEEcccCcCCCC-cHHHhcCCC-C--CCC----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHH
Q 000452 1326 SIIPQDPVMFEG-TVRSNVDPL-E--EYT----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGR 1397 (1495)
Q Consensus 1326 siIpQdp~LF~G-TIR~NLdp~-~--~~s----d~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LAR 1397 (1495)
+|++|++.+|.. |+++|+... . ..+ ++++.++++..++.+...+.| .+||||||||++|||
T Consensus 94 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~-----------~~LSgGq~QRVaLAR 162 (377)
T PRK11607 94 NMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKP-----------HQLSGGQRQRVALAR 162 (377)
T ss_pred EEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHH
Confidence 999999999976 999999732 1 222 345678888888876655544 368999999999999
Q ss_pred HHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCchhhh-ccCEEEEEeCcEEEEecChhHHhhcCC
Q 000452 1398 VLLKRRKILMLDEATASVDTATDNLIQQSLRQHF--SDCTVITIAHRITSVI-DSDMVLLLSHGLIEEYDSPRKLLENKS 1474 (1495)
Q Consensus 1398 ALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f--~~~TVI~IAHRl~ti~-~~DrIlVL~~G~ivE~gsp~~Ll~~~~ 1474 (1495)
||+++|++|+||||||+||..+...+.+.|++.. .+.|+|+|||+++.+. -||+|++|++|++++.|+|+++.+++.
T Consensus 163 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p~ 242 (377)
T PRK11607 163 SLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPT 242 (377)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCCc
Confidence 9999999999999999999999999988777654 3689999999999875 599999999999999999999998876
Q ss_pred ChHH
Q 000452 1475 SSFS 1478 (1495)
Q Consensus 1475 s~f~ 1478 (1495)
..|.
T Consensus 243 ~~~~ 246 (377)
T PRK11607 243 TRYS 246 (377)
T ss_pred cHHH
Confidence 6553
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-38 Score=363.58 Aligned_cols=228 Identities=25% Similarity=0.337 Sum_probs=190.5
Q ss_pred eEEEeeeeEEeCC-------CCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHH
Q 000452 1247 KIDLRDLQVRYAP-------HMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLH 1319 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~-------~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~ 1319 (1495)
.|+++||+++|+. +..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 4899999999952 123699999999999999999999999999999999999999999999999999866666
Q ss_pred HHhcccEEEcccCc--CCCC-cHHHhcCC----CC----CCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCch
Q 000452 1320 DLRTRLSIIPQDPV--MFEG-TVRSNVDP----LE----EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMG 1388 (1495)
Q Consensus 1320 ~LR~~isiIpQdp~--LF~G-TIR~NLdp----~~----~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~G 1388 (1495)
..|++++|+||+|. ++.. |+.+|+.. .. ...++++.++++.+++.+... +. ...+||+|
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~------~~----~~~~LS~G 153 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHA------SY----YPHMLAPG 153 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHH------hc----CchhcCHH
Confidence 66778999999985 4544 88888742 11 112356788999999843221 11 22479999
Q ss_pred HHHHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecCchhhhc-cCEEEEEeCcEEEEecC
Q 000452 1389 QRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGLIEEYDS 1465 (1495)
Q Consensus 1389 QrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gs 1465 (1495)
||||++|||||+++|+||||||||++||+++...+.+.|++..+ ++|||+|+|+++.+.. ||+|++|++|++++.|+
T Consensus 154 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~ 233 (267)
T PRK15112 154 QKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGS 233 (267)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCC
Confidence 99999999999999999999999999999999999999998643 7899999999999986 99999999999999999
Q ss_pred hhHHhhcCC-ChHHHHHHHH
Q 000452 1466 PRKLLENKS-SSFSQLVAEY 1484 (1495)
Q Consensus 1466 p~~Ll~~~~-s~f~~lv~~~ 1484 (1495)
++++.+++. ..+++++.++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~ 253 (267)
T PRK15112 234 TADVLASPLHELTKRLIAGH 253 (267)
T ss_pred HHHHhcCCCCHHHHHHHHhc
Confidence 999987643 4455676654
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-38 Score=365.15 Aligned_cols=224 Identities=24% Similarity=0.391 Sum_probs=189.5
Q ss_pred cceEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccc-----CCccEEEEcCEeCCCC--C
Q 000452 1245 HGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVE-----PAAGQILIDGIDISLI--G 1317 (1495)
Q Consensus 1245 ~g~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~e-----p~~G~I~IDG~dI~~i--~ 1317 (1495)
...|+++|++++|+. ..+|+|+||+|++||++||+|++|||||||+++|.|+.+ |++|+|.+||.++... .
T Consensus 37 ~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~ 114 (286)
T PRK14275 37 KPHVVAKNFSIYYGE--FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114 (286)
T ss_pred ceEEEEeeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccc
Confidence 346999999999964 359999999999999999999999999999999999865 4999999999998653 3
Q ss_pred HHHHhcccEEEcccCcCCCCcHHHhcCCCC---CC-C----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchH
Q 000452 1318 LHDLRTRLSIIPQDPVMFEGTVRSNVDPLE---EY-T----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQ 1389 (1495)
Q Consensus 1318 l~~LR~~isiIpQdp~LF~GTIR~NLdp~~---~~-s----d~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQ 1389 (1495)
...+|++++|+||+|.+|.+|+++|+.... .. + ++++.++++.+++.+.+.. .+ ......|||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~---~~----~~~~~~LSgGq 187 (286)
T PRK14275 115 EVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSD---RL----DKNALGLSGGQ 187 (286)
T ss_pred hHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhh---Hh----hCChhhCCHHH
Confidence 346789999999999999999999996321 11 1 2456678888887543321 22 23456799999
Q ss_pred HHHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-cCEEEEEeCcEEEEecChhH
Q 000452 1390 RQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRK 1468 (1495)
Q Consensus 1390 rQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~ 1468 (1495)
|||++|||||+++|++|||||||++||.++...+.+.|++..+++|||+++|+++.+.+ ||+|++|++|++++.|++++
T Consensus 188 ~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~ 267 (286)
T PRK14275 188 QQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQ 267 (286)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999987667899999999999865 99999999999999999999
Q ss_pred HhhcCCChH
Q 000452 1469 LLENKSSSF 1477 (1495)
Q Consensus 1469 Ll~~~~s~f 1477 (1495)
+.+++...+
T Consensus 268 ~~~~~~~~~ 276 (286)
T PRK14275 268 LFTNPKDRM 276 (286)
T ss_pred HHhCCCcHH
Confidence 987654333
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-38 Score=361.46 Aligned_cols=212 Identities=20% Similarity=0.347 Sum_probs=182.1
Q ss_pred eEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHH-hccc
Q 000452 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDL-RTRL 1325 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~L-R~~i 1325 (1495)
.++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+..+. |..+
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 82 (255)
T PRK11300 5 LLSVSGLMMRFGG--LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGV 82 (255)
T ss_pred eEEEeeEEEEECC--EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCe
Confidence 5999999999964 359999999999999999999999999999999999999999999999999998876665 4569
Q ss_pred EEEcccCcCCCC-cHHHhcCCCCC-------------------CC---HHHHHHHHHHcCCcHHHHhccCCcccccccCC
Q 000452 1326 SIIPQDPVMFEG-TVRSNVDPLEE-------------------YT---DEQIWEALDKCQLGDEVRKKEGKLDSKVTENG 1382 (1495)
Q Consensus 1326 siIpQdp~LF~G-TIR~NLdp~~~-------------------~s---d~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G 1382 (1495)
+|+||+|.+|.+ |+++|+..... .. .+++.++++..++.+ ......
T Consensus 83 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~ 151 (255)
T PRK11300 83 VRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLE-----------HANRQA 151 (255)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhh-----------hhhCCh
Confidence 999999999986 99999974210 00 123445555555543 233445
Q ss_pred CCCCchHHHHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecCchhhhc-cCEEEEEeCcE
Q 000452 1383 ENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGL 1459 (1495)
Q Consensus 1383 ~nLS~GQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~ 1459 (1495)
.+||+|||||++||||++.+|+||||||||++||+.+...+.+.|++..+ ++|||+++|+++.+.+ ||+|++|++|+
T Consensus 152 ~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~ 231 (255)
T PRK11300 152 GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGT 231 (255)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCe
Confidence 68999999999999999999999999999999999999999999987643 7899999999999866 99999999999
Q ss_pred EEEecChhHHhh
Q 000452 1460 IEEYDSPRKLLE 1471 (1495)
Q Consensus 1460 ivE~gsp~~Ll~ 1471 (1495)
+++.|+++++.+
T Consensus 232 i~~~~~~~~~~~ 243 (255)
T PRK11300 232 PLANGTPEEIRN 243 (255)
T ss_pred EEecCCHHHHhh
Confidence 999999999875
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-38 Score=354.06 Aligned_cols=208 Identities=25% Similarity=0.382 Sum_probs=183.8
Q ss_pred EEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccEE
Q 000452 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSI 1327 (1495)
Q Consensus 1248 I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~isi 1327 (1495)
|+++||+++|+. . ..|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++...+. .+++++|
T Consensus 2 l~~~~l~~~~~~-~---~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 75 (232)
T PRK10771 2 LKLTDITWLYHH-L---PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP--SRRPVSM 75 (232)
T ss_pred eEEEEEEEEECC-c---cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh--hhccEEE
Confidence 789999999963 2 239999999999999999999999999999999999999999999999887654 3678999
Q ss_pred EcccCcCCCC-cHHHhcCC-CC------CCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHH
Q 000452 1328 IPQDPVMFEG-TVRSNVDP-LE------EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVL 1399 (1495)
Q Consensus 1328 IpQdp~LF~G-TIR~NLdp-~~------~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAL 1399 (1495)
+||+|.+|.+ |+++|+.. +. +..++++.++++.+++.+.+.+.|. .||+|||||++||||+
T Consensus 76 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----------~LS~G~~qrv~laral 144 (232)
T PRK10771 76 LFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPG-----------QLSGGQRQRVALARCL 144 (232)
T ss_pred EecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcc-----------cCCHHHHHHHHHHHHH
Confidence 9999999986 99999973 21 1224568899999999877666553 6899999999999999
Q ss_pred ccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecCchhhhc-cCEEEEEeCcEEEEecChhHHhhc
Q 000452 1400 LKRRKILMLDEATASVDTATDNLIQQSLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLEN 1472 (1495)
Q Consensus 1400 Lr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~Ll~~ 1472 (1495)
+++|+++||||||++||.++...+.+.|++..+ ++|+|+++|+++.+.. ||+|++|++|++++.|+++++..+
T Consensus 145 ~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~ 220 (232)
T PRK10771 145 VREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSG 220 (232)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999999999999998753 7899999999999865 999999999999999999999854
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-38 Score=354.51 Aligned_cols=207 Identities=26% Similarity=0.366 Sum_probs=173.6
Q ss_pred EEEeeeeEEeCCCC--CcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCH---HHHh
Q 000452 1248 IDLRDLQVRYAPHM--PFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGL---HDLR 1322 (1495)
Q Consensus 1248 I~f~nv~~~Y~~~~--~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l---~~LR 1322 (1495)
|+++||+++|+... +++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++.+.+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 78999999996431 369999999999999999999999999999999999999999999999999988773 5788
Q ss_pred cccEEEcccC--cCC-CCcHHHhcCC----CC-CCCHHHH----HHHHHHcCCcHHHHhccCCcccccccCCCCCCchHH
Q 000452 1323 TRLSIIPQDP--VMF-EGTVRSNVDP----LE-EYTDEQI----WEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQR 1390 (1495)
Q Consensus 1323 ~~isiIpQdp--~LF-~GTIR~NLdp----~~-~~sd~ei----~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQr 1390 (1495)
++++|+||+| .++ ..|+++|+.. .. ...+++. .++++..++.+ ........+||+|||
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~ 151 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPE----------EVLNRYPHELSGGQR 151 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCCh----------hHhhCCchhcCHHHH
Confidence 9999999999 344 4699999852 11 1122211 25566666532 122334467999999
Q ss_pred HHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecCchhhh-ccCEEEEEeCcEEEEec
Q 000452 1391 QLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFS--DCTVITIAHRITSVI-DSDMVLLLSHGLIEEYD 1464 (1495)
Q Consensus 1391 Qrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~--~~TVI~IAHRl~ti~-~~DrIlVL~~G~ivE~g 1464 (1495)
||++|||||+.+|+||+|||||++||+.+...+.+.|++..+ ++|||+++|+++.+. .||+|++|++|++++.|
T Consensus 152 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 152 QRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 999999999999999999999999999999999999998754 789999999999987 59999999999998865
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-38 Score=355.56 Aligned_cols=214 Identities=32% Similarity=0.502 Sum_probs=188.5
Q ss_pred EEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcC-------------eEE
Q 000452 618 IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG-------------TKA 684 (1495)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g-------------~~a 684 (1495)
++++|+++.|+..+++++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++| .++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 4689999999643335799999999999999999999999999999999999999999999987 269
Q ss_pred EEccCCcccCccHHHHHhcCCC-CCHHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHHHHHhccCCCE
Q 000452 685 YVAQSPWIQSGKIEDNILFGKE-MDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADI 763 (1495)
Q Consensus 685 yv~Q~~~l~~~ti~enI~fg~~-~~~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~i 763 (1495)
|++|++.+++.|++||+.++.. ...++..+.++.+++.+.++.+|.|.++..+....+||||||||++||||++.+|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999988999999998754 344556667777888888888998888888999999999999999999999999999
Q ss_pred eEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEecCCCccccCCEEEEEeCCEEEEecChHHHHhcC
Q 000452 764 YLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVINSG 832 (1495)
Q Consensus 764 llLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~ 832 (1495)
+||||||++||+...+.+.+. +....+++|+|++||+++.+..||++++|++|++++.|+.+++....
T Consensus 161 lllDEP~~gLD~~~~~~l~~~-l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~ 228 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEA-LDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQK 228 (238)
T ss_pred EEEeCccccCCHHHHHHHHHH-HHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhcC
Confidence 999999999999998888754 44444789999999999998889999999999999999988876543
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-38 Score=359.31 Aligned_cols=222 Identities=24% Similarity=0.393 Sum_probs=186.7
Q ss_pred eEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCC-----ccEEEEcCEeCCC--CCHH
Q 000452 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPA-----AGQILIDGIDISL--IGLH 1319 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~-----~G~I~IDG~dI~~--i~l~ 1319 (1495)
.++++|++++|+. .++|+|+||+|++||++||+|++|||||||+++|.|+++|+ +|+|.+||.++.. .+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 81 (252)
T PRK14272 4 LLSAQDVNIYYGD--KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPV 81 (252)
T ss_pred EEEEeeeEEEECC--EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHH
Confidence 4789999999964 35999999999999999999999999999999999999874 8999999999975 3455
Q ss_pred HHhcccEEEcccCcCCCC-cHHHhcCC-C--CC-CCHHH----HHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHH
Q 000452 1320 DLRTRLSIIPQDPVMFEG-TVRSNVDP-L--EE-YTDEQ----IWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQR 1390 (1495)
Q Consensus 1320 ~LR~~isiIpQdp~LF~G-TIR~NLdp-~--~~-~sd~e----i~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQr 1390 (1495)
.+|++++|+||+|.+|.+ |+++|+.. . .. ..+++ +.+.++..++.+.+ ++.++.+ ..+||+|||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~~~~----~~~LS~G~~ 154 (252)
T PRK14272 82 AMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEV---KDRLKTP----ATGLSGGQQ 154 (252)
T ss_pred HhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhh---hhhhcCC----cccCCHHHH
Confidence 788999999999999985 99999962 1 11 12333 33345556655433 2233433 467999999
Q ss_pred HHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-cCEEEEEeCcEEEEecChhHH
Q 000452 1391 QLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKL 1469 (1495)
Q Consensus 1391 Qrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~L 1469 (1495)
||++|||||+++|+||||||||++||..+...+.+.|++..+++|+|+++|+++.+.+ ||+|++|++|++++.|+++++
T Consensus 155 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14272 155 QRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQL 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999987677999999999999986 999999999999999999999
Q ss_pred hhcCCChH
Q 000452 1470 LENKSSSF 1477 (1495)
Q Consensus 1470 l~~~~s~f 1477 (1495)
++++...+
T Consensus 235 ~~~~~~~~ 242 (252)
T PRK14272 235 FTNPRDER 242 (252)
T ss_pred HhCcCcHH
Confidence 87655444
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-38 Score=370.94 Aligned_cols=225 Identities=20% Similarity=0.338 Sum_probs=188.2
Q ss_pred eEEEeeeeEEeCC--CCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccc----CCccEEEEcCEeCCCCCHHH
Q 000452 1247 KIDLRDLQVRYAP--HMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVE----PAAGQILIDGIDISLIGLHD 1320 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~--~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~e----p~~G~I~IDG~dI~~i~l~~ 1320 (1495)
-++++|++++|.. +...+|+||||+|++||.+||+|+||||||||+++|.|+.+ |++|+|.+||.|+.+++.++
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 4899999999953 22459999999999999999999999999999999999986 58999999999999988776
Q ss_pred Hh----cccEEEcccCc--CCC-CcHHHhcC-CC------CC------CCHHHHHHHHHHcCCcHHHHhccCCccccccc
Q 000452 1321 LR----TRLSIIPQDPV--MFE-GTVRSNVD-PL------EE------YTDEQIWEALDKCQLGDEVRKKEGKLDSKVTE 1380 (1495)
Q Consensus 1321 LR----~~isiIpQdp~--LF~-GTIR~NLd-p~------~~------~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e 1380 (1495)
++ ++|+||||+|. ++. -||.+|+. +. +. ..++++.++|++++|.+.-.. + ..
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~----~----~~ 154 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDA----M----RS 154 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHH----H----hC
Confidence 53 47999999996 333 48888874 11 10 113567889999999743111 1 12
Q ss_pred CCCCCCchHHHHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecCchhhhc-cCEEEEEeC
Q 000452 1381 NGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFS--DCTVITIAHRITSVID-SDMVLLLSH 1457 (1495)
Q Consensus 1381 ~G~nLS~GQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~ 1457 (1495)
....||||||||++|||||+.+|+||||||||++||..+...|.+.|++..+ +.|+|+|||+++.+.. ||||+||++
T Consensus 155 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~ 234 (330)
T PRK15093 155 FPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYC 234 (330)
T ss_pred CchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 2357999999999999999999999999999999999999999999998653 7899999999999965 999999999
Q ss_pred cEEEEecChhHHhhcCCChHHH
Q 000452 1458 GLIEEYDSPRKLLENKSSSFSQ 1479 (1495)
Q Consensus 1458 G~ivE~gsp~~Ll~~~~s~f~~ 1479 (1495)
|+|+|.|+++++++++...|.+
T Consensus 235 G~ive~g~~~~i~~~p~~~y~~ 256 (330)
T PRK15093 235 GQTVETAPSKELVTTPHHPYTQ 256 (330)
T ss_pred CEEEEECCHHHHHhCCCCHHHH
Confidence 9999999999999776555654
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=353.21 Aligned_cols=200 Identities=26% Similarity=0.428 Sum_probs=173.3
Q ss_pred EEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccEE
Q 000452 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSI 1327 (1495)
Q Consensus 1248 I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~isi 1327 (1495)
++++|++++|.. .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++.. ..|++++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~~ 74 (210)
T cd03269 1 LEVENVTKRFGR--VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIGY 74 (210)
T ss_pred CEEEEEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEEE
Confidence 578999999963 459999999999999999999999999999999999999999999999998753 56789999
Q ss_pred EcccCcCCCC-cHHHhcCCCC---CC----CHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHH
Q 000452 1328 IPQDPVMFEG-TVRSNVDPLE---EY----TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVL 1399 (1495)
Q Consensus 1328 IpQdp~LF~G-TIR~NLdp~~---~~----sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAL 1399 (1495)
+||+|.+|.+ |+++|+.... .. .++++.++++..++.+...+ ...+||+|||||++||||+
T Consensus 75 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~la~al 143 (210)
T cd03269 75 LPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANK-----------RVEELSKGNQQKVQFIAAV 143 (210)
T ss_pred eccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhC-----------cHhhCCHHHHHHHHHHHHH
Confidence 9999999986 9999985321 11 13456677777777654432 3357999999999999999
Q ss_pred ccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-cCEEEEEeCcEEEEec
Q 000452 1400 LKRRKILMLDEATASVDTATDNLIQQSLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGLIEEYD 1464 (1495)
Q Consensus 1400 Lr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~g 1464 (1495)
+++|++|||||||++||+.+...+.+.|++.. +++|||+|+|+++.+.. ||+|++|++|++++.|
T Consensus 144 ~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 144 IHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999999999998864 47899999999999865 9999999999998865
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-38 Score=373.47 Aligned_cols=212 Identities=26% Similarity=0.409 Sum_probs=184.3
Q ss_pred eEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccE
Q 000452 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLS 1326 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~is 1326 (1495)
.|+++||+++|+. ..+|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.|||.|+.+.+ ...|++++
T Consensus 41 ~i~i~nl~k~y~~--~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~ig 117 (340)
T PRK13536 41 AIDLAGVSKSYGD--KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARIG 117 (340)
T ss_pred eEEEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccEE
Confidence 5999999999964 35999999999999999999999999999999999999999999999999998654 56889999
Q ss_pred EEcccCcCC-CCcHHHhcCCCC---CCCH----HHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHH
Q 000452 1327 IIPQDPVMF-EGTVRSNVDPLE---EYTD----EQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRV 1398 (1495)
Q Consensus 1327 iIpQdp~LF-~GTIR~NLdp~~---~~sd----~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARA 1398 (1495)
|+||++.+| ..|+++|+..+. ..+. +.+.++++.+++.+. .+..+ .+||+|||||++||||
T Consensus 118 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~-------~~~~~----~~LS~G~kqrv~lA~a 186 (340)
T PRK13536 118 VVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESK-------ADARV----SDLSGGMKRRLTLARA 186 (340)
T ss_pred EEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchh-------hCCCh----hhCCHHHHHHHHHHHH
Confidence 999999987 459999996322 1222 234566777776543 33333 4799999999999999
Q ss_pred HccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-cCEEEEEeCcEEEEecChhHHhhc
Q 000452 1399 LLKRRKILMLDEATASVDTATDNLIQQSLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLEN 1472 (1495)
Q Consensus 1399 LLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~Ll~~ 1472 (1495)
|+.+|++|||||||++||+.+...+.+.|++.. .++|||+++|+++.+.+ ||+|++|++|++++.|+++++.++
T Consensus 187 L~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 187 LINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999999999999999864 47999999999999965 999999999999999999999754
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-38 Score=368.93 Aligned_cols=212 Identities=25% Similarity=0.357 Sum_probs=183.0
Q ss_pred eEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccE
Q 000452 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLS 1326 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~is 1326 (1495)
.|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... ....|++++
T Consensus 4 ~i~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~ 80 (303)
T TIGR01288 4 AIDLVGVSKSYGD--KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAIG 80 (303)
T ss_pred EEEEEeEEEEeCC--eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcEE
Confidence 5899999999964 3599999999999999999999999999999999999999999999999998764 356789999
Q ss_pred EEcccCcCCC-CcHHHhcCCC---CCCCHH----HHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHH
Q 000452 1327 IIPQDPVMFE-GTVRSNVDPL---EEYTDE----QIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRV 1398 (1495)
Q Consensus 1327 iIpQdp~LF~-GTIR~NLdp~---~~~sd~----ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARA 1398 (1495)
|+||+|.+|. .|+++|+... ...+++ ++.++++.+++.+. ++..+ ..||||||||++||||
T Consensus 81 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~-------~~~~~----~~LSgG~~qrv~la~a 149 (303)
T TIGR01288 81 VVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESK-------ADVRV----ALLSGGMKRRLTLARA 149 (303)
T ss_pred EEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhH-------hcCch----hhCCHHHHHHHHHHHH
Confidence 9999999885 5999999621 123332 34556777766543 33333 4699999999999999
Q ss_pred HccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-cCEEEEEeCcEEEEecChhHHhhc
Q 000452 1399 LLKRRKILMLDEATASVDTATDNLIQQSLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLEN 1472 (1495)
Q Consensus 1399 LLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~Ll~~ 1472 (1495)
|+++|++|+|||||++||+.+...+.+.|++.. +++|||+++|+++.+.. ||+|++|++|++++.|+++++.++
T Consensus 150 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 150 LINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999999999999998864 47899999999999875 999999999999999999999754
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-38 Score=368.38 Aligned_cols=211 Identities=23% Similarity=0.334 Sum_probs=187.3
Q ss_pred EEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccEE
Q 000452 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSI 1327 (1495)
Q Consensus 1248 I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~isi 1327 (1495)
++++|++++|+. ..+|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+ ....+|++++|
T Consensus 3 l~~~~l~~~~~~--~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig~ 79 (301)
T TIGR03522 3 IRVSSLTKLYGT--QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIGY 79 (301)
T ss_pred EEEEEEEEEECC--EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceEE
Confidence 789999999964 459999999999999999999999999999999999999999999999999987 44678999999
Q ss_pred EcccCcCCCC-cHHHhcCCCC---CCC----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHH
Q 000452 1328 IPQDPVMFEG-TVRSNVDPLE---EYT----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVL 1399 (1495)
Q Consensus 1328 IpQdp~LF~G-TIR~NLdp~~---~~s----d~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAL 1399 (1495)
+||+|.+|.+ |+++||.... ..+ ++++.++++..++.+...+ ...+||+|||||++|||||
T Consensus 80 ~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LS~G~~qrv~la~al 148 (301)
T TIGR03522 80 LPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHK-----------KIGQLSKGYRQRVGLAQAL 148 (301)
T ss_pred ecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcC-----------chhhCCHHHHHHHHHHHHH
Confidence 9999999987 9999996321 122 3457778888887655432 2457999999999999999
Q ss_pred ccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-cCEEEEEeCcEEEEecChhHHhhc
Q 000452 1400 LKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLEN 1472 (1495)
Q Consensus 1400 Lr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~Ll~~ 1472 (1495)
+++|++|+|||||++||+.+...+.+.|++..+++|||+++|+++.+.. ||||++|++|++++.|+++++.++
T Consensus 149 ~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 149 IHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 9999999999999999999999999999998778999999999998876 999999999999999999998754
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-38 Score=351.34 Aligned_cols=203 Identities=27% Similarity=0.378 Sum_probs=175.4
Q ss_pred EEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHH---Hhcc
Q 000452 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHD---LRTR 1324 (1495)
Q Consensus 1248 I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~---LR~~ 1324 (1495)
|+++|++++|+++ ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+++.+. +|++
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 2 IRFEHVSKAYLGG-RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ 80 (222)
T ss_pred EEEEeeEEEecCC-CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence 7899999999533 45999999999999999999999999999999999999999999999999998876544 6889
Q ss_pred cEEEcccCcCC-CCcHHHhcCCC---CCCCH----HHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHH
Q 000452 1325 LSIIPQDPVMF-EGTVRSNVDPL---EEYTD----EQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLG 1396 (1495)
Q Consensus 1325 isiIpQdp~LF-~GTIR~NLdp~---~~~sd----~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LA 1396 (1495)
++|+||+|.+| ..|+++|+... ...++ +++.++++..++.+...+. ..+||+|||||++||
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~la 149 (222)
T PRK10908 81 IGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNF-----------PIQLSGGEQQRVGIA 149 (222)
T ss_pred eEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCC-----------chhCCHHHHHHHHHH
Confidence 99999999874 66999999632 12333 2466788888876654433 357999999999999
Q ss_pred HHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-cCEEEEEeCcEEEE
Q 000452 1397 RVLLKRRKILMLDEATASVDTATDNLIQQSLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGLIEE 1462 (1495)
Q Consensus 1397 RALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE 1462 (1495)
||++++|++|||||||++||+++.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|+++.
T Consensus 150 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 150 RAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 99999999999999999999999999999999864 46899999999999976 89999999999853
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-38 Score=360.68 Aligned_cols=211 Identities=26% Similarity=0.366 Sum_probs=185.8
Q ss_pred EEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccEE
Q 000452 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSI 1327 (1495)
Q Consensus 1248 I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~isi 1327 (1495)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++|
T Consensus 2 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (256)
T TIGR03873 2 LRLSRVSWSAGG--RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVAL 79 (256)
T ss_pred ceEEeEEEEECC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEE
Confidence 789999999964 359999999999999999999999999999999999999999999999999999888888889999
Q ss_pred EcccCc-CCCCcHHHhcCCCC----C-------CCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHH
Q 000452 1328 IPQDPV-MFEGTVRSNVDPLE----E-------YTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCL 1395 (1495)
Q Consensus 1328 IpQdp~-LF~GTIR~NLdp~~----~-------~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~L 1395 (1495)
+||+|. .+..|+++|+.... . ..++++.++++++++.+...+ ....||+|||||++|
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~l 148 (256)
T TIGR03873 80 VEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADR-----------DMSTLSGGERQRVHV 148 (256)
T ss_pred ecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcC-----------CcccCCHHHHHHHHH
Confidence 999995 45679999995321 0 123467888888888654332 235799999999999
Q ss_pred HHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcC-CcEEEEEecCchhhh-ccCEEEEEeCcEEEEecChhHHhh
Q 000452 1396 GRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFS-DCTVITIAHRITSVI-DSDMVLLLSHGLIEEYDSPRKLLE 1471 (1495)
Q Consensus 1396 ARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~-~~TVI~IAHRl~ti~-~~DrIlVL~~G~ivE~gsp~~Ll~ 1471 (1495)
|||++.+|+++||||||++||+.+...+.+.|++..+ +.|||+++|+++.+. .||+|++|++|++++.|+++++.+
T Consensus 149 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 149 ARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred HHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 9999999999999999999999999999999998643 689999999999995 599999999999999999999864
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=352.53 Aligned_cols=213 Identities=32% Similarity=0.521 Sum_probs=189.4
Q ss_pred EEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe-------------EE
Q 000452 618 IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------KA 684 (1495)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~-------------~a 684 (1495)
++++|++++|+.. ++++++|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|. ++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 4689999999632 247999999999999999999999999999999999999999999999872 68
Q ss_pred EEccCCcccCccHHHHHhcCCC-CCHHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHHHHHhccCCCE
Q 000452 685 YVAQSPWIQSGKIEDNILFGKE-MDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADI 763 (1495)
Q Consensus 685 yv~Q~~~l~~~ti~enI~fg~~-~~~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~i 763 (1495)
|++|++++++.|++||+.++.. ...+.+.+.++.+++.+.++.++.|..+..+.++.+||||||||++||||++.+|++
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 159 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPI 159 (234)
T ss_pred EeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999999998753 345566777788888888999988888888999999999999999999999999999
Q ss_pred eEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEecCCCccccCCEEEEEeCCEEEEecChHHHHhcC
Q 000452 764 YLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVINSG 832 (1495)
Q Consensus 764 llLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~ 832 (1495)
+||||||++||+.+.+.+.+ ++....+++|+|++||+++.++.||++++|++|++++.|+++++....
T Consensus 160 llLDEP~~~LD~~~~~~l~~-~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~ 227 (234)
T cd03251 160 LILDEATSALDTESERLVQA-ALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQG 227 (234)
T ss_pred EEEeCccccCCHHHHHHHHH-HHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHcC
Confidence 99999999999999888865 555555689999999999998789999999999999999998886543
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-38 Score=350.58 Aligned_cols=202 Identities=35% Similarity=0.519 Sum_probs=177.3
Q ss_pred cEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe--------------
Q 000452 617 AIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------- 682 (1495)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~-------------- 682 (1495)
.+++++++|+|+.. .++|+|+|+++++|+.++|+|+||||||||++++.|+++|++|.|.++|.
T Consensus 3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 58899999999743 68999999999999999999999999999999999999999999998873
Q ss_pred EEEEccCC--cccCccHHHHHhcCCC---CCH----HHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHH
Q 000452 683 KAYVAQSP--WIQSGKIEDNILFGKE---MDR----ERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQI 753 (1495)
Q Consensus 683 ~ayv~Q~~--~l~~~ti~enI~fg~~---~~~----~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 753 (1495)
+|||+|+| .++..||.|.+.||.. .++ ++.+++++.|++.+..+ +...+|||||||||+|
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~-----------r~p~~LSGGqkqRvaI 149 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLD-----------RPPFNLSGGQKQRVAI 149 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhcc-----------CCccccCCcceeeHHh
Confidence 69999999 5779999999999964 233 45677888888876543 6678999999999999
Q ss_pred HHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCcccc-CCEEEEEeCCEEEEecChHHHHhc
Q 000452 754 ARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLN-SKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYTDVINS 831 (1495)
Q Consensus 754 ARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 831 (1495)
|.+|..+|+++|||||||+||+...+.+.+.+.....+ ++|+|++|||++.+.. ||++++|++|+++.+|+++++.+.
T Consensus 150 A~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 150 AGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred hHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 99999999999999999999999999987644333334 6899999999999876 999999999999999999888754
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-38 Score=350.10 Aligned_cols=201 Identities=24% Similarity=0.387 Sum_probs=177.0
Q ss_pred EEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccEE
Q 000452 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSI 1327 (1495)
Q Consensus 1248 I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~isi 1327 (1495)
++++||+++|+. +++|+||+|++||++||+|++|||||||+++|+|+++|++|+|.+||.|+.+.+ ..|++++|
T Consensus 1 ~~~~~l~~~~~~----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~~ 74 (213)
T TIGR01277 1 LALDKVRYEYEH----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVSM 74 (213)
T ss_pred CeEEeeeEEeCC----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceEE
Confidence 368999999963 568999999999999999999999999999999999999999999999987643 46888999
Q ss_pred EcccCcCCCC-cHHHhcCC-CC-C-----CCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHH
Q 000452 1328 IPQDPVMFEG-TVRSNVDP-LE-E-----YTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVL 1399 (1495)
Q Consensus 1328 IpQdp~LF~G-TIR~NLdp-~~-~-----~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAL 1399 (1495)
+||+|.+|.+ |+++|+.. .. . ..++++.++++..++.+...+.|. +||+|||||++||||+
T Consensus 75 v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----------~LS~G~~qrl~laral 143 (213)
T TIGR01277 75 LFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPE-----------QLSGGQRQRVALARCL 143 (213)
T ss_pred EeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcc-----------cCCHHHHHHHHHHHHH
Confidence 9999999975 99999862 21 1 134567889999998776655543 6899999999999999
Q ss_pred ccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecCchhhhc-cCEEEEEeCcEEEEecC
Q 000452 1400 LKRRKILMLDEATASVDTATDNLIQQSLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGLIEEYDS 1465 (1495)
Q Consensus 1400 Lr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gs 1465 (1495)
+++|+|++|||||+++|.++...+.+.|++..+ ++|+|+|||+++.+.+ ||+|++|++|++++.|.
T Consensus 144 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 144 VRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 999999999999999999999999999998753 7899999999999865 99999999999999874
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-38 Score=372.85 Aligned_cols=204 Identities=22% Similarity=0.307 Sum_probs=177.1
Q ss_pred cceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCE----eCCCCCHHHH---h-cccEEEcccCcC
Q 000452 1263 FVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGI----DISLIGLHDL---R-TRLSIIPQDPVM 1334 (1495)
Q Consensus 1263 ~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~----dI~~i~l~~L---R-~~isiIpQdp~L 1334 (1495)
.+|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.|||. |+...+.+.+ | ++++|+||++.+
T Consensus 38 ~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l 117 (382)
T TIGR03415 38 VGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFAL 117 (382)
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcC
Confidence 4899999999999999999999999999999999999999999999996 6777766554 3 589999999999
Q ss_pred CC-CcHHHhcCCC---CCCC----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCeE
Q 000452 1335 FE-GTVRSNVDPL---EEYT----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKIL 1406 (1495)
Q Consensus 1335 F~-GTIR~NLdp~---~~~s----d~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALLr~~~IL 1406 (1495)
|+ .|+++|+... ...+ .+++.++++.++|.++....| .+||||||||++|||||+++|+||
T Consensus 118 ~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~-----------~~LSgGq~QRV~LARALa~~P~IL 186 (382)
T TIGR03415 118 MPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKP-----------GELSGGMQQRVGLARAFAMDADIL 186 (382)
T ss_pred CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHHHHhcCCCEE
Confidence 97 6999999632 1122 245678899999876654433 369999999999999999999999
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecCchhhh-ccCEEEEEeCcEEEEecChhHHhhcCCChH
Q 000452 1407 MLDEATASVDTATDNLIQQSLRQHFS--DCTVITIAHRITSVI-DSDMVLLLSHGLIEEYDSPRKLLENKSSSF 1477 (1495)
Q Consensus 1407 iLDEaTsslD~~Td~~Iq~~Ir~~f~--~~TVI~IAHRl~ti~-~~DrIlVL~~G~ivE~gsp~~Ll~~~~s~f 1477 (1495)
|||||||+||+.+...+++.|++..+ ++|+|+|||+++.+. .||||++|++|++++.|+|++++.++...|
T Consensus 187 LlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~p~~~~ 260 (382)
T TIGR03415 187 LMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDY 260 (382)
T ss_pred EEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCcchHH
Confidence 99999999999999999999988753 789999999999875 599999999999999999999997654433
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=351.18 Aligned_cols=211 Identities=31% Similarity=0.504 Sum_probs=189.3
Q ss_pred cEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcC-------------eE
Q 000452 617 AIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG-------------TK 683 (1495)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g-------------~~ 683 (1495)
.++++|++++|+. .+++++|+||++++|++++|+||||||||||+++|+|+.+|++|+|.++| .+
T Consensus 2 ~l~~~~l~~~~~~--~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 79 (229)
T cd03254 2 EIEFENVNFSYDE--KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMI 79 (229)
T ss_pred eEEEEEEEEecCC--CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhE
Confidence 4789999999952 24699999999999999999999999999999999999999999999987 26
Q ss_pred EEEccCCcccCccHHHHHhcCCC-CCHHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHHHHHhccCCC
Q 000452 684 AYVAQSPWIQSGKIEDNILFGKE-MDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDAD 762 (1495)
Q Consensus 684 ayv~Q~~~l~~~ti~enI~fg~~-~~~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ 762 (1495)
+|++|+++++..|++||+.++.+ ...++..+.++.+++.+.++.+|.|..+..+.+..+|||||||||+||||++++|+
T Consensus 80 ~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~ 159 (229)
T cd03254 80 GVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPK 159 (229)
T ss_pred EEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999998999999998754 34566777788889998899999898888999999999999999999999999999
Q ss_pred EeEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEecCCCccccCCEEEEEeCCEEEEecChHHHHh
Q 000452 763 IYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVIN 830 (1495)
Q Consensus 763 illLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~ 830 (1495)
++||||||++||+.+.+.+++ ++....+++|+|++||+++.++.||++++|++|++.+.|+.+++..
T Consensus 160 llllDEP~~~LD~~~~~~l~~-~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 226 (229)
T cd03254 160 ILILDEATSNIDTETEKLIQE-ALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLA 226 (229)
T ss_pred EEEEeCccccCCHHHHHHHHH-HHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 999999999999999888865 4555556899999999999987899999999999999998887754
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-38 Score=352.71 Aligned_cols=209 Identities=24% Similarity=0.347 Sum_probs=182.0
Q ss_pred eEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccE
Q 000452 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLS 1326 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~is 1326 (1495)
.|+++|++++|.. .++++|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++.+.+...+|++++
T Consensus 7 ~i~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (225)
T PRK10247 7 LLQLQNVGYLAGD--AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVS 84 (225)
T ss_pred eEEEeccEEeeCC--ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccE
Confidence 5999999999963 35999999999999999999999999999999999999999999999999999988888899999
Q ss_pred EEcccCcCCCCcHHHhcCCC----CC-CCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHcc
Q 000452 1327 IIPQDPVMFEGTVRSNVDPL----EE-YTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLK 1401 (1495)
Q Consensus 1327 iIpQdp~LF~GTIR~NLdp~----~~-~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALLr 1401 (1495)
|+||+|.+|+.|+++|+... .. ..++++.++++..++.+.. ......+||+|||||++|||||++
T Consensus 85 ~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LS~G~~qrv~laral~~ 154 (225)
T PRK10247 85 YCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTI----------LTKNIAELSGGEKQRISLIRNLQF 154 (225)
T ss_pred EEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHH----------hcCCcccCCHHHHHHHHHHHHHhc
Confidence 99999999999999999631 11 2344566788888775321 123456799999999999999999
Q ss_pred CCCeEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecCchhhhccCEEEEEe-CcEEEEecChh
Q 000452 1402 RRKILMLDEATASVDTATDNLIQQSLRQHFS--DCTVITIAHRITSVIDSDMVLLLS-HGLIEEYDSPR 1467 (1495)
Q Consensus 1402 ~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~--~~TVI~IAHRl~ti~~~DrIlVL~-~G~ivE~gsp~ 1467 (1495)
+|+++||||||++||+.+...+.+.|++..+ ++|||+|+|+++.+..||+|++|+ ++..+++|+|+
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 155 MPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 9999999999999999999999999998653 789999999999998999999995 56667777774
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-38 Score=351.64 Aligned_cols=200 Identities=27% Similarity=0.455 Sum_probs=173.0
Q ss_pred EEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCC--CCHHHHhccc
Q 000452 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISL--IGLHDLRTRL 1325 (1495)
Q Consensus 1248 I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~--i~l~~LR~~i 1325 (1495)
|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. .....+|+++
T Consensus 1 l~~~~l~~~~~~--~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (213)
T cd03262 1 IEIKNLHKSFGD--FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKV 78 (213)
T ss_pred CEEEEEEEEECC--eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcc
Confidence 578999999964 359999999999999999999999999999999999999999999999999853 4556788999
Q ss_pred EEEcccCcCCC-CcHHHhcCCC----CCCC----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHH
Q 000452 1326 SIIPQDPVMFE-GTVRSNVDPL----EEYT----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLG 1396 (1495)
Q Consensus 1326 siIpQdp~LF~-GTIR~NLdp~----~~~s----d~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LA 1396 (1495)
+|+||+|.+|. .|+++|+... ...+ ++++.++++..++.+...+. ..+||+|||||++||
T Consensus 79 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~la 147 (213)
T cd03262 79 GMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAY-----------PAQLSGGQQQRVAIA 147 (213)
T ss_pred eEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhC-----------ccccCHHHHHHHHHH
Confidence 99999999986 5999999642 1222 23466777777776544333 357999999999999
Q ss_pred HHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-cCEEEEEeCcEE
Q 000452 1397 RVLLKRRKILMLDEATASVDTATDNLIQQSLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGLI 1460 (1495)
Q Consensus 1397 RALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~i 1460 (1495)
||++++|++|||||||++||+++.+.+.+.|++.. .++|||+++|+++.+.+ ||+|++|++|++
T Consensus 148 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 148 RALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999864 47899999999999975 999999999975
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=357.07 Aligned_cols=221 Identities=21% Similarity=0.352 Sum_probs=184.0
Q ss_pred eEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEe-----CCCCCHHH-
Q 000452 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGID-----ISLIGLHD- 1320 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~d-----I~~i~l~~- 1320 (1495)
.++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+ +.+.+...
T Consensus 6 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~ 83 (258)
T PRK11701 6 LLSVRGLTKLYGP--RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAER 83 (258)
T ss_pred eEEEeeeEEEcCC--ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHH
Confidence 5999999999964 359999999999999999999999999999999999999999999999999 88776654
Q ss_pred ---HhcccEEEcccCc--CCC-CcHHHhcCC----CCCCC----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCC
Q 000452 1321 ---LRTRLSIIPQDPV--MFE-GTVRSNVDP----LEEYT----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWS 1386 (1495)
Q Consensus 1321 ---LR~~isiIpQdp~--LF~-GTIR~NLdp----~~~~s----d~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS 1386 (1495)
.|+.++|+||+|. ++. .|+++|+.. +.... ++++.++++..++.+ +.....+.+||
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS 153 (258)
T PRK11701 84 RRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDA----------ARIDDLPTTFS 153 (258)
T ss_pred HHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCCh----------hHHhCCCccCC
Confidence 3567999999984 343 478888741 12111 234555666665532 12345567899
Q ss_pred chHHHHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecCchhhhc-cCEEEEEeCcEEEEe
Q 000452 1387 MGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGLIEEY 1463 (1495)
Q Consensus 1387 ~GQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~ 1463 (1495)
+|||||++|||||+++|+||||||||++||+.+...+.+.|++..+ +.|||+|+|+++.+.+ ||+|++|++|++++.
T Consensus 154 ~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~ 233 (258)
T PRK11701 154 GGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVES 233 (258)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999987653 7899999999999974 999999999999999
Q ss_pred cChhHHhhcCCChHHH
Q 000452 1464 DSPRKLLENKSSSFSQ 1479 (1495)
Q Consensus 1464 gsp~~Ll~~~~s~f~~ 1479 (1495)
|+++++..++...|.+
T Consensus 234 ~~~~~~~~~~~~~~~~ 249 (258)
T PRK11701 234 GLTDQVLDDPQHPYTQ 249 (258)
T ss_pred CCHHHHhcCCCCHHHH
Confidence 9999998765444543
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=356.01 Aligned_cols=223 Identities=23% Similarity=0.330 Sum_probs=186.4
Q ss_pred eEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccC----CccEEEEcCEeCCCCCHHHHh
Q 000452 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEP----AAGQILIDGIDISLIGLHDLR 1322 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep----~~G~I~IDG~dI~~i~l~~LR 1322 (1495)
.|+++|++++| . .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||.+++.. +..+
T Consensus 4 ~l~~~~l~~~~-~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~~ 78 (254)
T PRK10418 4 QIELRNIALQA-A--QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALRG 78 (254)
T ss_pred EEEEeCeEEEe-c--cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--cccc
Confidence 58999999999 2 3599999999999999999999999999999999999999 999999999998632 2234
Q ss_pred cccEEEcccCc-CCC--CcHHHhcCC----C-CCCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHH
Q 000452 1323 TRLSIIPQDPV-MFE--GTVRSNVDP----L-EEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVC 1394 (1495)
Q Consensus 1323 ~~isiIpQdp~-LF~--GTIR~NLdp----~-~~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~ 1394 (1495)
++++|+||+|. .|. -|+.+|+.. . ....+++++++++.+++.+. ++.+......||+|||||++
T Consensus 79 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~Gq~qrv~ 150 (254)
T PRK10418 79 RKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENA--------ARVLKLYPFEMSGGMLQRMM 150 (254)
T ss_pred ceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCCh--------hhhhhcCCcccCHHHHHHHH
Confidence 67999999995 443 477777531 1 12345678999999988652 11233445689999999999
Q ss_pred HHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecCchhhhc-cCEEEEEeCcEEEEecChhHHhh
Q 000452 1395 LGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLE 1471 (1495)
Q Consensus 1395 LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~Ll~ 1471 (1495)
|||||+++|+||||||||++||..+...+.+.|++..+ ++|||+|+|+++.+.+ ||+|++|++|++++.|+++++.+
T Consensus 151 laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 230 (254)
T PRK10418 151 IALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFN 230 (254)
T ss_pred HHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHhh
Confidence 99999999999999999999999999999999998753 7899999999999865 99999999999999999999987
Q ss_pred cCCC-hHHHHHH
Q 000452 1472 NKSS-SFSQLVA 1482 (1495)
Q Consensus 1472 ~~~s-~f~~lv~ 1482 (1495)
++.. .++.++.
T Consensus 231 ~~~~~~~~~~~~ 242 (254)
T PRK10418 231 APKHAVTRSLVS 242 (254)
T ss_pred CCCCHHHHHHHH
Confidence 6544 4554554
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=355.09 Aligned_cols=215 Identities=28% Similarity=0.413 Sum_probs=192.9
Q ss_pred ccEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe-------------
Q 000452 616 TAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------- 682 (1495)
Q Consensus 616 ~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~------------- 682 (1495)
+.++++|++++|+.. .+++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.
T Consensus 18 ~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~ 96 (257)
T cd03288 18 GEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSR 96 (257)
T ss_pred ceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhh
Confidence 469999999999632 257999999999999999999999999999999999999999999999872
Q ss_pred EEEEccCCcccCccHHHHHhcCCCCCHHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHHHHHhccCCC
Q 000452 683 KAYVAQSPWIQSGKIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDAD 762 (1495)
Q Consensus 683 ~ayv~Q~~~l~~~ti~enI~fg~~~~~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ 762 (1495)
++|++|+|+++++|++||+........+++.+.++..++.+.++.+|.|.++.+++.+.+||||||||++||||++++|+
T Consensus 97 i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ 176 (257)
T cd03288 97 LSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSS 176 (257)
T ss_pred EEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 69999999999999999997654445566777888889999999999999999999999999999999999999999999
Q ss_pred EeEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEecCCCccccCCEEEEEeCCEEEEecChHHHHhcC
Q 000452 763 IYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVINSG 832 (1495)
Q Consensus 763 illLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~ 832 (1495)
++||||||++||+++.+.+++ ++....+++|+|++||+++.+..||++++|++|++++.|+++++.+..
T Consensus 177 llllDEPt~gLD~~~~~~l~~-~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~ 245 (257)
T cd03288 177 ILIMDEATASIDMATENILQK-VVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQE 245 (257)
T ss_pred EEEEeCCccCCCHHHHHHHHH-HHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhcc
Confidence 999999999999998777764 455555689999999999998889999999999999999999887643
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=351.58 Aligned_cols=213 Identities=31% Similarity=0.529 Sum_probs=189.0
Q ss_pred EEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe-------------EE
Q 000452 618 IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------KA 684 (1495)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~-------------~a 684 (1495)
++++|++++|+. .+++++|+||++++|++++|+||||||||||+++|+|+.+|++|+|.++|. ++
T Consensus 1 l~~~~l~~~~~~--~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDP--GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCC--CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 468999999952 256999999999999999999999999999999999999999999999883 68
Q ss_pred EEccCCcccCccHHHHHhcCCC-CCHHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHHHHHhccCCCE
Q 000452 685 YVAQSPWIQSGKIEDNILFGKE-MDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADI 763 (1495)
Q Consensus 685 yv~Q~~~l~~~ti~enI~fg~~-~~~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~i 763 (1495)
|++|++++++.|++||+.++.. ...+...+.++.+++.+.++.+|.|.++.+++++.+||||||||++|||||+++|++
T Consensus 79 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~l 158 (236)
T cd03253 79 VVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPI 158 (236)
T ss_pred EECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999999998753 344456677788889888899999999999999999999999999999999999999
Q ss_pred eEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEecCCCccccCCEEEEEeCCEEEEecChHHHHhcCC
Q 000452 764 YLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVINSGT 833 (1495)
Q Consensus 764 llLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 833 (1495)
+||||||++||+++.+.+.+ ++....+++|+|++||+.+.+..||++++|++|++...|+.+++.....
T Consensus 159 lllDEP~~~LD~~~~~~l~~-~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~~~ 227 (236)
T cd03253 159 LLLDEATSALDTHTEREIQA-ALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGG 227 (236)
T ss_pred EEEeCCcccCCHHHHHHHHH-HHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhccc
Confidence 99999999999999888875 4444445899999999999987899999999999999999888766443
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-38 Score=356.39 Aligned_cols=212 Identities=23% Similarity=0.288 Sum_probs=179.1
Q ss_pred EEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccc--cCCccEEEEcCEeCCCCCHHHH-hcc
Q 000452 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIV--EPAAGQILIDGIDISLIGLHDL-RTR 1324 (1495)
Q Consensus 1248 I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~--ep~~G~I~IDG~dI~~i~l~~L-R~~ 1324 (1495)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+. +|++|+|.+||.++...+.... |.+
T Consensus 1 l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (243)
T TIGR01978 1 LKIKDLHVSVED--KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAG 78 (243)
T ss_pred CeEeeEEEEECC--EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccc
Confidence 578999999963 35999999999999999999999999999999999994 7999999999999998887664 456
Q ss_pred cEEEcccCcCCCC-cHHHhcCCC----CC------CC----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchH
Q 000452 1325 LSIIPQDPVMFEG-TVRSNVDPL----EE------YT----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQ 1389 (1495)
Q Consensus 1325 isiIpQdp~LF~G-TIR~NLdp~----~~------~s----d~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQ 1389 (1495)
++|+||+|.+|.+ |+++|+... .. .+ ++++.++++..++.+.. ++..+. ..||+||
T Consensus 79 i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~~---~~LS~G~ 149 (243)
T TIGR01978 79 LFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEF------LNRSVN---EGFSGGE 149 (243)
T ss_pred eEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhh------cccccc---cCcCHHH
Confidence 9999999999987 899998421 00 11 24567777777775321 122221 2499999
Q ss_pred HHHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc--cCEEEEEeCcEEEEecCh
Q 000452 1390 RQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHF-SDCTVITIAHRITSVID--SDMVLLLSHGLIEEYDSP 1466 (1495)
Q Consensus 1390 rQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f-~~~TVI~IAHRl~ti~~--~DrIlVL~~G~ivE~gsp 1466 (1495)
|||++|||||+++|++|||||||++||+.+...+.+.|++.. +++|||+|+|+++.+.. ||+|++|++|++++.|++
T Consensus 150 ~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~ 229 (243)
T TIGR01978 150 KKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDV 229 (243)
T ss_pred HHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCH
Confidence 999999999999999999999999999999999999999875 47899999999999976 799999999999999999
Q ss_pred hHHh
Q 000452 1467 RKLL 1470 (1495)
Q Consensus 1467 ~~Ll 1470 (1495)
+++-
T Consensus 230 ~~~~ 233 (243)
T TIGR01978 230 ELAK 233 (243)
T ss_pred HHhc
Confidence 8654
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=355.91 Aligned_cols=223 Identities=25% Similarity=0.396 Sum_probs=189.4
Q ss_pred eEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcC------EeCCCCCHHH
Q 000452 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDG------IDISLIGLHD 1320 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG------~dI~~i~l~~ 1320 (1495)
.|+++|++++|+. +++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.++| .|+.+.+...
T Consensus 10 ~i~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~ 87 (257)
T PRK14246 10 VFNISRLYLYIND--KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIK 87 (257)
T ss_pred heeeeeEEEecCC--ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHH
Confidence 5999999999964 4599999999999999999999999999999999999999987666654 6777777788
Q ss_pred HhcccEEEcccCcCCCC-cHHHhcCCC----CCCCH----HHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHH
Q 000452 1321 LRTRLSIIPQDPVMFEG-TVRSNVDPL----EEYTD----EQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQ 1391 (1495)
Q Consensus 1321 LR~~isiIpQdp~LF~G-TIR~NLdp~----~~~sd----~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQ 1391 (1495)
+|++++|+||+|.+|.+ |+++|+... ...++ +++.++++..++.+.+.. .....+..||+||||
T Consensus 88 ~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~~~LS~G~~q 160 (257)
T PRK14246 88 LRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYD-------RLNSPASQLSGGQQQ 160 (257)
T ss_pred HhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchh-------hhcCCcccCCHHHHH
Confidence 89999999999999976 999999731 11122 235677788887654311 122345679999999
Q ss_pred HHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhh-ccCEEEEEeCcEEEEecChhHHh
Q 000452 1392 LVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVI-DSDMVLLLSHGLIEEYDSPRKLL 1470 (1495)
Q Consensus 1392 rl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~-~~DrIlVL~~G~ivE~gsp~~Ll 1470 (1495)
|++||||++++|++|+|||||++||..+...+.+.|++..+++|||++||+++.+. .||++++|++|++++.|+++++.
T Consensus 161 rl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~~ 240 (257)
T PRK14246 161 RLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIF 240 (257)
T ss_pred HHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999999999999998877899999999999995 59999999999999999999998
Q ss_pred hcCCChHH
Q 000452 1471 ENKSSSFS 1478 (1495)
Q Consensus 1471 ~~~~s~f~ 1478 (1495)
+++...+.
T Consensus 241 ~~~~~~~~ 248 (257)
T PRK14246 241 TSPKNELT 248 (257)
T ss_pred hCCCcHHH
Confidence 76544343
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=370.92 Aligned_cols=212 Identities=22% Similarity=0.381 Sum_probs=186.2
Q ss_pred EEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCC----CHHHHhc
Q 000452 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLI----GLHDLRT 1323 (1495)
Q Consensus 1248 I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i----~l~~LR~ 1323 (1495)
|++ |++++|... .+ |+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+. .....|+
T Consensus 2 l~~-~l~k~~~~~---~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 76 (352)
T PRK11144 2 LEL-NFKQQLGDL---CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKR 76 (352)
T ss_pred eEE-EEEEEeCCE---EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhC
Confidence 567 999999642 23 89999999999999999999999999999999999999999999998753 2456788
Q ss_pred ccEEEcccCcCCCC-cHHHhcCCC-CCCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHcc
Q 000452 1324 RLSIIPQDPVMFEG-TVRSNVDPL-EEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLK 1401 (1495)
Q Consensus 1324 ~isiIpQdp~LF~G-TIR~NLdp~-~~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALLr 1401 (1495)
+++|+||++.+|+. |+++|+... ....++++.++++.+++.+...+.| .+||||||||++|||||++
T Consensus 77 ~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----------~~LSgGq~qRvalaraL~~ 145 (352)
T PRK11144 77 RIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYP-----------GSLSGGEKQRVAIGRALLT 145 (352)
T ss_pred CEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCc-----------ccCCHHHHHHHHHHHHHHc
Confidence 99999999999974 999999742 3345677889999999876655544 4799999999999999999
Q ss_pred CCCeEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecCchhhhc-cCEEEEEeCcEEEEecChhHHhhcCCC
Q 000452 1402 RRKILMLDEATASVDTATDNLIQQSLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLENKSS 1475 (1495)
Q Consensus 1402 ~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~Ll~~~~s 1475 (1495)
+|++|+|||||++||+.+...+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+|+++..++..
T Consensus 146 ~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p~~ 222 (352)
T PRK11144 146 APELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASSAM 222 (352)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCcch
Confidence 9999999999999999999999999988754 6899999999998865 999999999999999999999987653
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-38 Score=366.49 Aligned_cols=203 Identities=24% Similarity=0.386 Sum_probs=176.9
Q ss_pred EeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccEEEcccCcCC
Q 000452 1256 RYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSIIPQDPVMF 1335 (1495)
Q Consensus 1256 ~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~isiIpQdp~LF 1335 (1495)
+|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.|+.. ....+|++++|+||++.+|
T Consensus 2 ~y~~--~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~ 78 (302)
T TIGR01188 2 VYGD--FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVD 78 (302)
T ss_pred eeCC--eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCC
Confidence 4643 359999999999999999999999999999999999999999999999999976 3456789999999999999
Q ss_pred CC-cHHHhcCCCC---CCC----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCeEE
Q 000452 1336 EG-TVRSNVDPLE---EYT----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILM 1407 (1495)
Q Consensus 1336 ~G-TIR~NLdp~~---~~s----d~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALLr~~~ILi 1407 (1495)
.+ |+++|+.... ..+ ++++.++++.+++.+...+ . ..+||||||||++|||||+++|++|+
T Consensus 79 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~----~~~LSgG~~qrv~la~al~~~p~lll 147 (302)
T TIGR01188 79 EDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADR-------P----VGTYSGGMRRRLDIAASLIHQPDVLF 147 (302)
T ss_pred CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCC-------c----hhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 87 9999996421 122 3457788888888654332 2 24799999999999999999999999
Q ss_pred EEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-cCEEEEEeCcEEEEecChhHHhhc
Q 000452 1408 LDEATASVDTATDNLIQQSLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLEN 1472 (1495)
Q Consensus 1408 LDEaTsslD~~Td~~Iq~~Ir~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~Ll~~ 1472 (1495)
|||||++||+.+...+.+.|++.. +++|||+++|+++.+.+ ||+|++|++|++++.|+++++.++
T Consensus 148 LDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 148 LDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 999999999999999999998864 47899999999999875 999999999999999999998754
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-38 Score=362.72 Aligned_cols=213 Identities=29% Similarity=0.484 Sum_probs=189.5
Q ss_pred eEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccE
Q 000452 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLS 1326 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~is 1326 (1495)
.|+++||+.+|..+ ..+|+||||+|++||.+|++||||||||||+++|.|+++|++|+|.++|.|...- ....|+++|
T Consensus 4 ~i~~~~l~k~~~~~-~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~ig 81 (293)
T COG1131 4 VIEVRNLTKKYGGD-KTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRIG 81 (293)
T ss_pred eeeecceEEEeCCC-CEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhheE
Confidence 47889999999742 3599999999999999999999999999999999999999999999999998765 678899999
Q ss_pred EEcccCcCCCC-cHHHhcCCCC-------CCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHH
Q 000452 1327 IIPQDPVMFEG-TVRSNVDPLE-------EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRV 1398 (1495)
Q Consensus 1327 iIpQdp~LF~G-TIR~NLdp~~-------~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARA 1398 (1495)
|+||+|.+++. |++|||+.+. +..++++.+.++..+|.+.- +.. ...||+|||||+.||+|
T Consensus 82 y~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-------~~~----~~~lS~G~kqrl~ia~a 150 (293)
T COG1131 82 YVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-------NKK----VRTLSGGMKQRLSIALA 150 (293)
T ss_pred EEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-------Ccc----hhhcCHHHHHHHHHHHH
Confidence 99999998877 9999997532 12356799999999997621 112 34689999999999999
Q ss_pred HccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcC-C-cEEEEEecCchhhhc-cCEEEEEeCcEEEEecChhHHhhc
Q 000452 1399 LLKRRKILMLDEATASVDTATDNLIQQSLRQHFS-D-CTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLEN 1472 (1495)
Q Consensus 1399 LLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~-~-~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~Ll~~ 1472 (1495)
|+.+|++|||||||++||+.+...+.+.|++..+ + +||++.+|.++.+.. ||||++|++|+++.+|+++++.+.
T Consensus 151 L~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 151 LLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred HhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 9999999999999999999999999999999875 4 799999999999988 999999999999999999998654
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-37 Score=346.98 Aligned_cols=206 Identities=31% Similarity=0.435 Sum_probs=186.6
Q ss_pred cEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe-------------E
Q 000452 617 AIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------K 683 (1495)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~-------------~ 683 (1495)
.++++|++++|+.. .+++|+|+||++++|++++|+||||||||||+++|+|+.+|++|+|.++|. +
T Consensus 2 ~l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (221)
T cd03244 2 DIEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRI 80 (221)
T ss_pred cEEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhE
Confidence 37899999999632 357999999999999999999999999999999999999999999999873 6
Q ss_pred EEEccCCcccCccHHHHHhcCCCCCHHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHHHHHhccCCCE
Q 000452 684 AYVAQSPWIQSGKIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADI 763 (1495)
Q Consensus 684 ayv~Q~~~l~~~ti~enI~fg~~~~~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~i 763 (1495)
+|++|++.+++.|++||+.+......++..+.++..++.+.+..+|.|.++..++.+.+||||||||++||||++.+|++
T Consensus 81 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l 160 (221)
T cd03244 81 SIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKI 160 (221)
T ss_pred EEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999987766667777888899999999999999999999999999999999999999999999999
Q ss_pred eEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEecCCCccccCCEEEEEeCCEEEEecC
Q 000452 764 YLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGK 824 (1495)
Q Consensus 764 llLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~~~d~i~~l~~G~i~~~g~ 824 (1495)
+||||||++||+.+.+.+.+ ++....+++|+|++||+++.+..||++++|++|++++.|+
T Consensus 161 lllDEP~~~LD~~~~~~l~~-~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 161 LVLDEATASVDPETDALIQK-TIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred EEEeCccccCCHHHHHHHHH-HHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 99999999999999888765 4555556789999999999988899999999999988764
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=369.49 Aligned_cols=203 Identities=30% Similarity=0.416 Sum_probs=174.4
Q ss_pred cEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe-----------EEE
Q 000452 617 AIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-----------KAY 685 (1495)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~-----------~ay 685 (1495)
.++++|++++|+ +++++|+|+||++++||+++|+|||||||||||++|+|+.+|++|+|.++|. ++|
T Consensus 3 ~l~i~~l~~~~~--~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~ 80 (356)
T PRK11650 3 GLKLQAVRKSYD--GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAM 80 (356)
T ss_pred EEEEEeEEEEeC--CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 488999999994 1357999999999999999999999999999999999999999999999984 699
Q ss_pred EccCCcccC-ccHHHHHhcCCC---CC----HHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHHHHHh
Q 000452 686 VAQSPWIQS-GKIEDNILFGKE---MD----RERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARAL 757 (1495)
Q Consensus 686 v~Q~~~l~~-~ti~enI~fg~~---~~----~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl 757 (1495)
|+|++.++. .||+|||.|+.. .+ +++.+++++.++|.+.. .+...+|||||||||+|||||
T Consensus 81 v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-----------~~~~~~LSgGq~QRvalARAL 149 (356)
T PRK11650 81 VFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLL-----------DRKPRELSGGQRQRVAMGRAI 149 (356)
T ss_pred EeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHh-----------hCChhhCCHHHHHHHHHHHHH
Confidence 999999985 699999998753 22 23455667777775433 356689999999999999999
Q ss_pred ccCCCEeEecCcCCccCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCccc-cCCEEEEEeCCEEEEecChHHHHhcC
Q 000452 758 YQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLN-SKTVLYVTHQVEFLP-AADLVLVIKDGKITQAGKYTDVINSG 832 (1495)
Q Consensus 758 ~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvIlvTH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 832 (1495)
+.+|+++|||||||+||+.+.+++.+.+.....+ +.|+|+||||.+.+. .||+|++|++|++++.|+++++....
T Consensus 150 ~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p 226 (356)
T PRK11650 150 VREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKP 226 (356)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCC
Confidence 9999999999999999999999888764433333 899999999999875 49999999999999999999987653
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=367.71 Aligned_cols=202 Identities=26% Similarity=0.393 Sum_probs=171.5
Q ss_pred EEEEeeEEEecCCC-CCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe--------------
Q 000452 618 IEIADGNFSWDISS-HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------- 682 (1495)
Q Consensus 618 i~~~~~~~~~~~~~-~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~-------------- 682 (1495)
|+++|++++|+..+ ..++|+|+||++++||+++|+||||||||||+++|.|+.+|++|+|.++|.
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999996322 247999999999999999999999999999999999999999999999873
Q ss_pred --EEEEccCCcccC-ccHHHHHhcCCC---CCH----HHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHH
Q 000452 683 --KAYVAQSPWIQS-GKIEDNILFGKE---MDR----ERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQ 752 (1495)
Q Consensus 683 --~ayv~Q~~~l~~-~ti~enI~fg~~---~~~----~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~ 752 (1495)
++|++|++.++. .|++||+.++.. .++ ++..++++..+|.+. ....+.+|||||||||+
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~-----------~~~~~~~LSgGqkQRV~ 150 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDK-----------HDSYPSNLSGGQKQRVA 150 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchh-----------hhCChhhCCHHHHHHHH
Confidence 699999998884 799999988642 222 234455555555432 23667899999999999
Q ss_pred HHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHH-hC-CCEEEEEecCCCcccc-CCEEEEEeCCEEEEecChHHHH
Q 000452 753 IARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL-LN-SKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYTDVI 829 (1495)
Q Consensus 753 LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~~-~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~ 829 (1495)
|||||+.+|+++|||||||+||+.+...+.+. +... .+ +.|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~l-L~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILEL-LKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIF 229 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999988764 4443 33 8999999999999865 9999999999999999999987
Q ss_pred hc
Q 000452 830 NS 831 (1495)
Q Consensus 830 ~~ 831 (1495)
..
T Consensus 230 ~~ 231 (343)
T TIGR02314 230 SH 231 (343)
T ss_pred cC
Confidence 54
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=356.81 Aligned_cols=211 Identities=25% Similarity=0.350 Sum_probs=184.7
Q ss_pred EEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCC--------ccEEEEcCEeCCCCCHH
Q 000452 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPA--------AGQILIDGIDISLIGLH 1319 (1495)
Q Consensus 1248 I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~--------~G~I~IDG~dI~~i~l~ 1319 (1495)
|+++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++|+ +|+|.+||.++...+..
T Consensus 2 l~~~nl~~~~~~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~ 79 (272)
T PRK13547 2 LTADHLHVARRH--RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAP 79 (272)
T ss_pred eEEEEEEEEECC--EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHH
Confidence 789999999964 35999999999999999999999999999999999999998 99999999999988888
Q ss_pred HHhcccEEEcccCc-CCCCcHHHhcCCCC--------CC---CHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCc
Q 000452 1320 DLRTRLSIIPQDPV-MFEGTVRSNVDPLE--------EY---TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSM 1387 (1495)
Q Consensus 1320 ~LR~~isiIpQdp~-LF~GTIR~NLdp~~--------~~---sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~ 1387 (1495)
.+|+.++|+||++. +|..|+++|+.... .. .++.++++++..++.+.. ......||+
T Consensus 80 ~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSg 148 (272)
T PRK13547 80 RLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALV-----------GRDVTTLSG 148 (272)
T ss_pred HHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhh-----------cCCcccCCH
Confidence 88889999999986 67889999996321 11 234567788888775432 234467999
Q ss_pred hHHHHHHHHHHHc---------cCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecCchhhh-ccCEEEEE
Q 000452 1388 GQRQLVCLGRVLL---------KRRKILMLDEATASVDTATDNLIQQSLRQHFS--DCTVITIAHRITSVI-DSDMVLLL 1455 (1495)
Q Consensus 1388 GQrQrl~LARALL---------r~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~--~~TVI~IAHRl~ti~-~~DrIlVL 1455 (1495)
|||||++|||||+ .+|++|||||||++||+.+...+.+.|++..+ ++|||+|+|+++.+. .||+|++|
T Consensus 149 G~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l 228 (272)
T PRK13547 149 GELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAML 228 (272)
T ss_pred HHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE
Confidence 9999999999999 59999999999999999999999999998653 689999999999986 59999999
Q ss_pred eCcEEEEecChhHHhh
Q 000452 1456 SHGLIEEYDSPRKLLE 1471 (1495)
Q Consensus 1456 ~~G~ivE~gsp~~Ll~ 1471 (1495)
++|++++.|+++++++
T Consensus 229 ~~G~i~~~g~~~~~~~ 244 (272)
T PRK13547 229 ADGAIVAHGAPADVLT 244 (272)
T ss_pred ECCeEEEecCHHHHcC
Confidence 9999999999999875
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=316.60 Aligned_cols=197 Identities=31% Similarity=0.444 Sum_probs=170.9
Q ss_pred EEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe-----------EEEE
Q 000452 618 IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-----------KAYV 686 (1495)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~-----------~ayv 686 (1495)
+.++++.|+|... ==..+++|++||++||+||+||||||||++|.|...|.+|+|.++|. ++.+
T Consensus 2 l~L~~V~~~y~~~-----~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSml 76 (231)
T COG3840 2 LALDDVRFSYGHL-----PMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSML 76 (231)
T ss_pred ccccceEEeeCcc-----eEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhh
Confidence 5677889999631 23568999999999999999999999999999999999999999995 4799
Q ss_pred ccCCcccC-ccHHHHHhcCCC-------CCHHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHHHHHhc
Q 000452 687 AQSPWIQS-GKIEDNILFGKE-------MDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALY 758 (1495)
Q Consensus 687 ~Q~~~l~~-~ti~enI~fg~~-------~~~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~ 758 (1495)
+|+..+|. -||++||-+|.. .++++.+.+....+|....+.+| .+|||||||||+|||++.
T Consensus 77 FQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP-----------~~LSGGqRQRvALARclv 145 (231)
T COG3840 77 FQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLP-----------GELSGGQRQRVALARCLV 145 (231)
T ss_pred hhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCc-----------cccCchHHHHHHHHHHHh
Confidence 99999985 599999999853 35677888888899988777655 689999999999999999
Q ss_pred cCCCEeEecCcCCccCHHHHHHHHHHHHHHHh--CCCEEEEEecCCCcccc-CCEEEEEeCCEEEEecChHHHHhc
Q 000452 759 QDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL--NSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYTDVINS 831 (1495)
Q Consensus 759 ~~~~illLDep~saLD~~~~~~i~~~~~~~~~--~~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 831 (1495)
++-+|+|||||||||||.-+.+... ++.... ++.|+++|||+++.+.. +|+++++++|+|.++|+.+++...
T Consensus 146 R~~PilLLDEPFsALdP~LR~eMl~-Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~ 220 (231)
T COG3840 146 REQPILLLDEPFSALDPALRAEMLA-LVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSG 220 (231)
T ss_pred ccCCeEEecCchhhcCHHHHHHHHH-HHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhcc
Confidence 9999999999999999998887764 344332 47899999999999875 999999999999999999988754
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-37 Score=354.11 Aligned_cols=221 Identities=20% Similarity=0.297 Sum_probs=186.3
Q ss_pred eEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCC---ccEEEEcCEeCCCC-----CH
Q 000452 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPA---AGQILIDGIDISLI-----GL 1318 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~---~G~I~IDG~dI~~i-----~l 1318 (1495)
-|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.++... ..
T Consensus 4 ~l~~~nl~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (262)
T PRK09984 4 IIRVEKLAKTFNQ--HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDI 81 (262)
T ss_pred EEEEeeEEEEeCC--eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhH
Confidence 5899999999963 35999999999999999999999999999999999999986 49999999998754 24
Q ss_pred HHHhcccEEEcccCcCCCC-cHHHhcCCCC---------------CCCHHHHHHHHHHcCCcHHHHhccCCcccccccCC
Q 000452 1319 HDLRTRLSIIPQDPVMFEG-TVRSNVDPLE---------------EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENG 1382 (1495)
Q Consensus 1319 ~~LR~~isiIpQdp~LF~G-TIR~NLdp~~---------------~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G 1382 (1495)
..+|++++|+||+|.+|.+ |+++|+.... +..++++.++++..++.+...+ ..
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~ 150 (262)
T PRK09984 82 RKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQ-----------RV 150 (262)
T ss_pred HHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhC-----------Cc
Confidence 5678899999999998875 9999996210 1123457778888887654433 33
Q ss_pred CCCCchHHHHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCchhhh-ccCEEEEEeCcE
Q 000452 1383 ENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHF--SDCTVITIAHRITSVI-DSDMVLLLSHGL 1459 (1495)
Q Consensus 1383 ~nLS~GQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f--~~~TVI~IAHRl~ti~-~~DrIlVL~~G~ 1459 (1495)
..||+|||||++||||++.+|++|||||||++||.++...+.+.|++.. .++|||+|+|+++.+. .||+|++|++|+
T Consensus 151 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~ 230 (262)
T PRK09984 151 STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGH 230 (262)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 5799999999999999999999999999999999999999999999875 3789999999999865 599999999999
Q ss_pred EEEecChhHHhhcCCChHHHHHHH
Q 000452 1460 IEEYDSPRKLLENKSSSFSQLVAE 1483 (1495)
Q Consensus 1460 ivE~gsp~~Ll~~~~s~f~~lv~~ 1483 (1495)
+++.|+|+++ . +....+++.+
T Consensus 231 i~~~g~~~~~-~--~~~~~~~~~~ 251 (262)
T PRK09984 231 VFYDGSSQQF-D--NERFDHLYRS 251 (262)
T ss_pred EEEeCCHHHh-c--cHHHHHHHhh
Confidence 9999999996 2 2345555443
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=350.39 Aligned_cols=199 Identities=30% Similarity=0.389 Sum_probs=166.8
Q ss_pred EEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe---------------
Q 000452 618 IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT--------------- 682 (1495)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~--------------- 682 (1495)
++++|++++|+ ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 1 l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFG---GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred CeEEEEEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 46899999995 357999999999999999999999999999999999999999999999772
Q ss_pred -EEEEccCCcccCc-cHHHHHhcCCC----CCH----HHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHH
Q 000452 683 -KAYVAQSPWIQSG-KIEDNILFGKE----MDR----ERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQ 752 (1495)
Q Consensus 683 -~ayv~Q~~~l~~~-ti~enI~fg~~----~~~----~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~ 752 (1495)
++|++|++.++.. |++||+.++.. .++ ++..++++.+++.+. ......+||||||||++
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~ 146 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGA-----------EDLYPAELSGGMKKRVA 146 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchh-----------hcCChhhCCHHHHHHHH
Confidence 5899999988765 99999987632 222 233445555555332 24566899999999999
Q ss_pred HHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHH-h-CCCEEEEEecCCCcccc-CCEEEEEeCCEEEEecChHHHH
Q 000452 753 IARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL-L-NSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYTDVI 829 (1495)
Q Consensus 753 LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~-~~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~ 829 (1495)
||||++.+|+++||||||++||+.+.+.+++. +... . .++|+|++||+++++.. ||++++|++|++++.|+++++.
T Consensus 147 ia~al~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 225 (235)
T cd03261 147 LARALALDPELLLYDEPTAGLDPIASGVIDDL-IRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELR 225 (235)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHH-HHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHc
Confidence 99999999999999999999999998888764 4443 3 38999999999998765 9999999999999999998876
Q ss_pred hc
Q 000452 830 NS 831 (1495)
Q Consensus 830 ~~ 831 (1495)
..
T Consensus 226 ~~ 227 (235)
T cd03261 226 AS 227 (235)
T ss_pred CC
Confidence 43
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-37 Score=343.73 Aligned_cols=205 Identities=36% Similarity=0.538 Sum_probs=182.3
Q ss_pred cEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe-------------E
Q 000452 617 AIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------K 683 (1495)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~-------------~ 683 (1495)
.++++|+++.|+. ..+++++|+||++++|++++|+||||||||||+++|+|+.+|++|+|.++|. +
T Consensus 2 ~l~~~~l~~~~~~-~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 2 RIEFRNVSFSYPN-QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred eEEEEEEEEEcCC-CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 3789999999953 2257999999999999999999999999999999999999999999999883 6
Q ss_pred EEEccCCcccCccHHHHHhcCCC-CCHHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHHHHHhccCCC
Q 000452 684 AYVAQSPWIQSGKIEDNILFGKE-MDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDAD 762 (1495)
Q Consensus 684 ayv~Q~~~l~~~ti~enI~fg~~-~~~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ 762 (1495)
+|++|+++++..|++||+.++.. .++++..+.++.+++.+.++..|.|.+|.+.+...+||||||||++||||+..+|+
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 160 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPP 160 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 89999999988899999988743 34556778888899998899999999999999999999999999999999999999
Q ss_pred EeEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEecCCCccccCCEEEEEeCCEEEEec
Q 000452 763 IYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAG 823 (1495)
Q Consensus 763 illLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~~~d~i~~l~~G~i~~~g 823 (1495)
++||||||++||+.+.+.+++ .+....+++|+|++||+++++..||++++|++|++++.|
T Consensus 161 llllDEPt~~LD~~~~~~l~~-~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 161 ILLLDEPTSAMDMNSEERLKE-RLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred EEEEeCccccCCHHHHHHHHH-HHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 999999999999999888875 455544458999999999988679999999999997653
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-37 Score=331.66 Aligned_cols=205 Identities=24% Similarity=0.401 Sum_probs=172.9
Q ss_pred cEEEEeeEEEecCCC-CCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe-------------
Q 000452 617 AIEIADGNFSWDISS-HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------- 682 (1495)
Q Consensus 617 ~i~~~~~~~~~~~~~-~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~------------- 682 (1495)
.++++|+++.|+... ..++|+||||++.+||..+|+|++|||||||.++|+|+.+|++|+|.++|+
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 589999999997421 115999999999999999999999999999999999999999999999993
Q ss_pred -EEEEccCCcc---cCccHHHHHhcCC-----CCCHHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHH
Q 000452 683 -KAYVAQSPWI---QSGKIEDNILFGK-----EMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQI 753 (1495)
Q Consensus 683 -~ayv~Q~~~l---~~~ti~enI~fg~-----~~~~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 753 (1495)
+-+|+|+|.- +..||++-|.-+. +-.+++..++++..+|.+... .+++.+|||||+|||||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l----------~R~P~eLSGGQ~QRiaI 152 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFL----------DRRPHELSGGQRQRIAI 152 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHH----------hcCchhcChhHHHHHHH
Confidence 4699999863 3458887775432 223455777888888865432 47788999999999999
Q ss_pred HHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHH-hCCCEEEEEecCCCcccc-CCEEEEEeCCEEEEecChHHHHhc
Q 000452 754 ARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL-LNSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYTDVINS 831 (1495)
Q Consensus 754 ARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~~~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 831 (1495)
||||..+|+++|||||||+||+.+...|++-+.... ..+-|.|+||||+..+.+ ||||++|++|++++.++.+++...
T Consensus 153 ARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~ 232 (252)
T COG1124 153 ARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSH 232 (252)
T ss_pred HHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcC
Confidence 999999999999999999999999999987544322 236799999999999987 999999999999999999998765
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-37 Score=352.87 Aligned_cols=201 Identities=24% Similarity=0.288 Sum_probs=174.1
Q ss_pred EEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccEE
Q 000452 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSI 1327 (1495)
Q Consensus 1248 I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~isi 1327 (1495)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.|+... +.+++|
T Consensus 2 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~~ 74 (255)
T PRK11248 2 LQISHLYADYGG--KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERGV 74 (255)
T ss_pred EEEEEEEEEeCC--eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEEE
Confidence 789999999964 4599999999999999999999999999999999999999999999999998642 346899
Q ss_pred EcccCcCCC-CcHHHhcCCC---CCCC----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHH
Q 000452 1328 IPQDPVMFE-GTVRSNVDPL---EEYT----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVL 1399 (1495)
Q Consensus 1328 IpQdp~LF~-GTIR~NLdp~---~~~s----d~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAL 1399 (1495)
+||+|.+|. .|+++|+... ...+ ++++.++++..++.+...+ ...+||||||||++|||||
T Consensus 75 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGq~qrl~laral 143 (255)
T PRK11248 75 VFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKR-----------YIWQLSGGQRQRVGIARAL 143 (255)
T ss_pred EeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhC-----------ChhhCCHHHHHHHHHHHHH
Confidence 999999887 5999999632 1122 2457788888888654433 2357999999999999999
Q ss_pred ccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCchhhhc-cCEEEEEe--CcEEEEecCh
Q 000452 1400 LKRRKILMLDEATASVDTATDNLIQQSLRQHF--SDCTVITIAHRITSVID-SDMVLLLS--HGLIEEYDSP 1466 (1495)
Q Consensus 1400 Lr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f--~~~TVI~IAHRl~ti~~-~DrIlVL~--~G~ivE~gsp 1466 (1495)
+++|++|||||||++||+.+...+.+.|++.. .++|||+|+|+++.+.. ||+|++|+ +|++++.+++
T Consensus 144 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 144 AANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 99999999999999999999999999999863 37999999999999865 99999998 5999998764
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-37 Score=344.48 Aligned_cols=204 Identities=27% Similarity=0.432 Sum_probs=179.1
Q ss_pred EEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccEE
Q 000452 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSI 1327 (1495)
Q Consensus 1248 I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~isi 1327 (1495)
++++||+++|+. .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++.... ++++++
T Consensus 1 l~l~~v~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~----~~~~~~ 74 (223)
T TIGR03740 1 LETKNLSKRFGK--QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD----LHKIGS 74 (223)
T ss_pred CEEEeEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc----cccEEE
Confidence 478999999964 35999999999999999999999999999999999999999999999999876422 357999
Q ss_pred EcccCcCCC-CcHHHhcCC---CCCCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCC
Q 000452 1328 IPQDPVMFE-GTVRSNVDP---LEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRR 1403 (1495)
Q Consensus 1328 IpQdp~LF~-GTIR~NLdp---~~~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALLr~~ 1403 (1495)
+||+|.+|. .|+++|+.. ....+++++.++++..++.+..... ..+||+|||||++||||++++|
T Consensus 75 ~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~~rv~laral~~~p 143 (223)
T TIGR03740 75 LIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKK-----------AKQFSLGMKQRLGIAIALLNHP 143 (223)
T ss_pred EcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhh-----------HhhCCHHHHHHHHHHHHHhcCC
Confidence 999998886 599999863 1234567889999999987654432 2479999999999999999999
Q ss_pred CeEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhh-ccCEEEEEeCcEEEEecChhH
Q 000452 1404 KILMLDEATASVDTATDNLIQQSLRQHF-SDCTVITIAHRITSVI-DSDMVLLLSHGLIEEYDSPRK 1468 (1495)
Q Consensus 1404 ~ILiLDEaTsslD~~Td~~Iq~~Ir~~f-~~~TVI~IAHRl~ti~-~~DrIlVL~~G~ivE~gsp~~ 1468 (1495)
++|+|||||++||+.+.+.+.+.|++.. .++|+|++||+++.+. .||+|++|++|++++.|++.+
T Consensus 144 ~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 144 KLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred CEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 9999999999999999999999998864 4789999999999985 599999999999999999865
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=347.45 Aligned_cols=202 Identities=24% Similarity=0.337 Sum_probs=176.8
Q ss_pred EEEeeeeEEeCCCC--CcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHH---HHh
Q 000452 1248 IDLRDLQVRYAPHM--PFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLH---DLR 1322 (1495)
Q Consensus 1248 I~f~nv~~~Y~~~~--~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~---~LR 1322 (1495)
++++|++++|+++. ..+|+|+||++++||++||+|++|||||||+++|.|+++|++|+|.+||.++..++.. ..|
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 78999999997532 4699999999999999999999999999999999999999999999999999877643 468
Q ss_pred cccEEEcccCcCCC-CcHHHhcCCCC----CCCH----HHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHH
Q 000452 1323 TRLSIIPQDPVMFE-GTVRSNVDPLE----EYTD----EQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLV 1393 (1495)
Q Consensus 1323 ~~isiIpQdp~LF~-GTIR~NLdp~~----~~sd----~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl 1393 (1495)
++++|+||+|.+|. .|+.+|+.... ..+. +++.++++++++.+...+.| .+||+|||||+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~lS~G~~qrv 150 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYP-----------HNLSGGQKQRV 150 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcCh-----------hhCCHHHHHHH
Confidence 89999999999987 69999996321 2222 35677888888876665544 47999999999
Q ss_pred HHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecCchhhhccCEEEEEeCcEE
Q 000452 1394 CLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFS--DCTVITIAHRITSVIDSDMVLLLSHGLI 1460 (1495)
Q Consensus 1394 ~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~--~~TVI~IAHRl~ti~~~DrIlVL~~G~i 1460 (1495)
+||||++++|++|+|||||++||.++.+.+.+.|++..+ ++|+|+|+|+++....||+|++|++|++
T Consensus 151 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 151 AIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 999999999999999999999999999999999988753 7999999999998777999999999986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=368.25 Aligned_cols=190 Identities=26% Similarity=0.366 Sum_probs=163.5
Q ss_pred CCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcC-----------------eEEEEccCCcccC
Q 000452 632 HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG-----------------TKAYVAQSPWIQS 694 (1495)
Q Consensus 632 ~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g-----------------~~ayv~Q~~~l~~ 694 (1495)
.+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++||+|++++++
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~ 84 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFP 84 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCC
Confidence 35799999999999999999999999999999999999999999999987 3699999999986
Q ss_pred -ccHHHHHhcCCCC---CH----HHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHHHHHhccCCCEeEe
Q 000452 695 -GKIEDNILFGKEM---DR----ERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLF 766 (1495)
Q Consensus 695 -~ti~enI~fg~~~---~~----~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illL 766 (1495)
.||+|||.|+.++ ++ ++..++++..+|+.. .++.+.+|||||||||+|||||+.+|+|+||
T Consensus 85 ~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~-----------~~~~p~~LSGGq~QRV~lARAL~~~p~iLLl 153 (363)
T TIGR01186 85 HMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEY-----------EHRYPDELSGGMQQRVGLARALAAEPDILLM 153 (363)
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchh-----------hhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 5999999987542 22 233444555555332 4577889999999999999999999999999
Q ss_pred cCcCCccCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCccc-cCCEEEEEeCCEEEEecChHHHHhcC
Q 000452 767 DDPFSAVDAHTGSHLFKEVLLGLL-NSKTVLYVTHQVEFLP-AADLVLVIKDGKITQAGKYTDVINSG 832 (1495)
Q Consensus 767 Dep~saLD~~~~~~i~~~~~~~~~-~~~tvIlvTH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 832 (1495)
||||||||+.+++++++.+..... .++|+|+|||+++++. .||+|++|++|++++.|+++++..+.
T Consensus 154 DEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p 221 (363)
T TIGR01186 154 DEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNP 221 (363)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCc
Confidence 999999999999999877665433 3899999999999865 49999999999999999999987653
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-37 Score=361.02 Aligned_cols=206 Identities=26% Similarity=0.408 Sum_probs=171.5
Q ss_pred ccEEEEeeEEEecCCC--CCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcC------------
Q 000452 616 TAIEIADGNFSWDISS--HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG------------ 681 (1495)
Q Consensus 616 ~~i~~~~~~~~~~~~~--~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g------------ 681 (1495)
..++++|++|+|+... ..++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~ 99 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHEL 99 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccc
Confidence 4699999999996321 24699999999999999999999999999999999999999999999875
Q ss_pred -----------------eEEEEccCC--cccCccHHHHHhcCCC---CCHH----HHHHHHHHhCcHHHHhhcCCCCccc
Q 000452 682 -----------------TKAYVAQSP--WIQSGKIEDNILFGKE---MDRE----RYNAVLDACSLEKDLEILSFGDQTV 735 (1495)
Q Consensus 682 -----------------~~ayv~Q~~--~l~~~ti~enI~fg~~---~~~~----~~~~vl~~~~l~~dl~~l~~gd~t~ 735 (1495)
.++||+|+| .+++.|++|||.|+.. .+.+ +.++.++.++|.. ..
T Consensus 100 ~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~----------~~ 169 (320)
T PRK13631 100 ITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDD----------SY 169 (320)
T ss_pred cccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCCh----------hH
Confidence 158999998 6888999999998742 2222 2333444444421 12
Q ss_pred ccCCCCccchHHHHHHHHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEecCCCccc-cCCEEEEE
Q 000452 736 VGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLP-AADLVLVI 814 (1495)
Q Consensus 736 ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~-~~d~i~~l 814 (1495)
.++++.+||||||||++|||||+++|+++||||||++||+.+.+.+++.+.....+++|+|+|||+++.+. .||+|++|
T Consensus 170 ~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl 249 (320)
T PRK13631 170 LERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVM 249 (320)
T ss_pred hcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEE
Confidence 46788999999999999999999999999999999999999988887643332345899999999999875 59999999
Q ss_pred eCCEEEEecChHHHHhc
Q 000452 815 KDGKITQAGKYTDVINS 831 (1495)
Q Consensus 815 ~~G~i~~~g~~~~l~~~ 831 (1495)
++|++++.|+++++...
T Consensus 250 ~~G~i~~~g~~~~~~~~ 266 (320)
T PRK13631 250 DKGKILKTGTPYEIFTD 266 (320)
T ss_pred ECCEEEEeCCHHHHhcC
Confidence 99999999999988653
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-37 Score=365.12 Aligned_cols=202 Identities=26% Similarity=0.374 Sum_probs=172.3
Q ss_pred cEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe-----------EEE
Q 000452 617 AIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-----------KAY 685 (1495)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~-----------~ay 685 (1495)
.++++|++++|. ++++|+|+||++++||+++|+|||||||||||++|+|+.+|++|+|.++|. ++|
T Consensus 6 ~l~~~~l~~~~~---~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~ 82 (351)
T PRK11432 6 FVVLKNITKRFG---SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICM 82 (351)
T ss_pred EEEEEeEEEEEC---CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 699999999995 356899999999999999999999999999999999999999999999883 699
Q ss_pred EccCCcccC-ccHHHHHhcCCC---CC----HHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHHHHHh
Q 000452 686 VAQSPWIQS-GKIEDNILFGKE---MD----RERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARAL 757 (1495)
Q Consensus 686 v~Q~~~l~~-~ti~enI~fg~~---~~----~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl 757 (1495)
|+|++.++. .|++|||.|+.. .+ +++.+++++..++... ..+...+|||||||||+|||||
T Consensus 83 vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~-----------~~r~~~~LSgGq~QRVaLARaL 151 (351)
T PRK11432 83 VFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGF-----------EDRYVDQISGGQQQRVALARAL 151 (351)
T ss_pred EeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchh-----------hcCChhhCCHHHHHHHHHHHHH
Confidence 999999885 599999999743 22 2344455555555432 2466789999999999999999
Q ss_pred ccCCCEeEecCcCCccCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCccc-cCCEEEEEeCCEEEEecChHHHHhcC
Q 000452 758 YQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLN-SKTVLYVTHQVEFLP-AADLVLVIKDGKITQAGKYTDVINSG 832 (1495)
Q Consensus 758 ~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvIlvTH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 832 (1495)
+.+|+++|||||||+||+...+.+.+.+.....+ ++|+|+||||.+.+. .||+|++|++|++.+.|+++++....
T Consensus 152 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p 228 (351)
T PRK11432 152 ILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQP 228 (351)
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 9999999999999999999999887654332233 799999999999875 49999999999999999999987653
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=390.59 Aligned_cols=228 Identities=22% Similarity=0.287 Sum_probs=156.6
Q ss_pred eEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHh------ccc---cCCccEEEEcC-------
Q 000452 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLF------RIV---EPAAGQILIDG------- 1310 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~------rl~---ep~~G~I~IDG------- 1310 (1495)
.++++|++. ..|+|+|++|++||.+||+|.+|||||||+.-++ ++. .+..+...++|
T Consensus 614 ~L~v~~l~~-------~~L~~isl~Ip~GeivgVtGvsGSGKSTLl~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 686 (943)
T PRK00349 614 FLKLKGARE-------NNLKNVDVEIPLGKFTCVTGVSGSGKSTLINETLYKALARKLNGAKKVPGKHKEIEGLEHLDKV 686 (943)
T ss_pred eEEecCCcc-------CCcCceEEEEeCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHhcccccCCCCCcccccccCCCce
Confidence 588888852 2699999999999999999999999999998764 211 12233333333
Q ss_pred -----EeCCC---------CC-HHHHhcccEE---------EcccCcCCC-----------CcHHHhcCCCCC-------
Q 000452 1311 -----IDISL---------IG-LHDLRTRLSI---------IPQDPVMFE-----------GTVRSNVDPLEE------- 1348 (1495)
Q Consensus 1311 -----~dI~~---------i~-l~~LR~~isi---------IpQdp~LF~-----------GTIR~NLdp~~~------- 1348 (1495)
.+|.. .+ .+.+|.-++= -++.-.+.. |+++.|+.+..+
T Consensus 687 v~vdQ~pig~~~RS~~~Ty~g~~d~iR~lfa~~~~a~~~g~~~~~FS~N~~~G~C~~C~G~G~~~~~~~f~~~~~~~C~~ 766 (943)
T PRK00349 687 IDIDQSPIGRTPRSNPATYTGVFDPIRELFAGTPEAKARGYKPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCDV 766 (943)
T ss_pred EEEecCCCCCCCCCCceeeccccHHHHHHhccCccccccCCCcccCCCCCCCCCCCcccccceEEEEeccCCCccccCcc
Confidence 33221 11 1233443332 223222222 566665543221
Q ss_pred -----------------CCHHH-----HHHHHHHc----CCc---HHHHhccCCccc-ccccCCCCCCchHHHHHHHHHH
Q 000452 1349 -----------------YTDEQ-----IWEALDKC----QLG---DEVRKKEGKLDS-KVTENGENWSMGQRQLVCLGRV 1398 (1495)
Q Consensus 1349 -----------------~sd~e-----i~~aL~~~----~L~---~~v~~lp~gLdt-~v~e~G~nLS~GQrQrl~LARA 1398 (1495)
.+-.| +.++++-. .+. +.+.. -||+. ..+.....||||||||+.|||+
T Consensus 767 C~G~R~~~e~l~v~~~g~~i~dvl~ltv~E~l~~f~~~~~i~~~l~~L~~--vgL~~l~l~~~~~tLSgGEkQRl~LAra 844 (943)
T PRK00349 767 CKGKRYNRETLEVKYKGKNIADVLDMTVEEALEFFEAIPKIARKLQTLVD--VGLGYIKLGQPATTLSGGEAQRVKLAKE 844 (943)
T ss_pred ccCccccccceEEEECCCCHHHHhcCcHHHHHHHHHhchhhhHHHHHHHH--CCCCcccccCCcccCCHHHHHHHHHHHH
Confidence 01111 22222221 010 01111 25554 3566778899999999999999
Q ss_pred HccCC---CeEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhccCEEEEE------eCcEEEEecChhH
Q 000452 1399 LLKRR---KILMLDEATASVDTATDNLIQQSLRQHF-SDCTVITIAHRITSVIDSDMVLLL------SHGLIEEYDSPRK 1468 (1495)
Q Consensus 1399 LLr~~---~ILiLDEaTsslD~~Td~~Iq~~Ir~~f-~~~TVI~IAHRl~ti~~~DrIlVL------~~G~ivE~gsp~~ 1468 (1495)
|+++| +++||||||++||.++...+.+.|++.. ++.|||+|+|+++.+..||+|++| ++|+|++.|+|++
T Consensus 845 L~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~e 924 (943)
T PRK00349 845 LSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIKTADWIIDLGPEGGDGGGEIVATGTPEE 924 (943)
T ss_pred HhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEecCCcCCCCCEEEEeCCHHH
Confidence 99999 9999999999999999999999998864 478999999999999999999999 7999999999999
Q ss_pred HhhcCCChHHHHHHH
Q 000452 1469 LLENKSSSFSQLVAE 1483 (1495)
Q Consensus 1469 Ll~~~~s~f~~lv~~ 1483 (1495)
+.+++.+.=.+...+
T Consensus 925 l~~~~~s~t~~~l~~ 939 (943)
T PRK00349 925 VAKVEASYTGRYLKP 939 (943)
T ss_pred HHhCcccHHHHHHHH
Confidence 998776655555544
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-37 Score=352.82 Aligned_cols=221 Identities=25% Similarity=0.351 Sum_probs=184.3
Q ss_pred eEEEeeeeEEeCCC-------CCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHH
Q 000452 1247 KIDLRDLQVRYAPH-------MPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLH 1319 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~-------~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~ 1319 (1495)
.|+++||+++|+.+ ..++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++..++..
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 38999999999741 35699999999999999999999999999999999999999999999999999887653
Q ss_pred ---HHhcccEEEcccCc--CC-CCcHHHhcCC-C---CCCC----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCC
Q 000452 1320 ---DLRTRLSIIPQDPV--MF-EGTVRSNVDP-L---EEYT----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENW 1385 (1495)
Q Consensus 1320 ---~LR~~isiIpQdp~--LF-~GTIR~NLdp-~---~~~s----d~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nL 1385 (1495)
.+|++++|+||+|. ++ ..|+++|+.. . ...+ ++.+.++++..++... ........|
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~----------~~~~~~~~L 152 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDS----------VLDKRPPQL 152 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChh----------HhhCCCccC
Confidence 47889999999983 44 4699999742 1 1111 2245666666655421 123345689
Q ss_pred CchHHHHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecCchhhhc-cCEEEEEeCcEEEE
Q 000452 1386 SMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGLIEE 1462 (1495)
Q Consensus 1386 S~GQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE 1462 (1495)
|+|||||++|||||+.+|+||||||||++||.++...+.+.|++..+ ++|+|+|+|+++.+.. ||+|++|++|++++
T Consensus 153 S~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~ 232 (268)
T PRK10419 153 SGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVE 232 (268)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEee
Confidence 99999999999999999999999999999999999999999988653 7899999999999975 99999999999999
Q ss_pred ecChhHHhhcCCChHH
Q 000452 1463 YDSPRKLLENKSSSFS 1478 (1495)
Q Consensus 1463 ~gsp~~Ll~~~~s~f~ 1478 (1495)
.|+++++... ++.|.
T Consensus 233 ~g~~~~~~~~-~~~~~ 247 (268)
T PRK10419 233 TQPVGDKLTF-SSPAG 247 (268)
T ss_pred eCChhhccCC-CCHHH
Confidence 9999999854 44444
|
|
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-37 Score=331.30 Aligned_cols=171 Identities=42% Similarity=0.716 Sum_probs=162.1
Q ss_pred EEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccEE
Q 000452 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSI 1327 (1495)
Q Consensus 1248 I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~isi 1327 (1495)
|+++|++++|+...+.+++|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.++|.++...+...+|++++|
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY 80 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEE
Confidence 47899999997543469999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EcccCcCCCCcHHHhcCCCCCCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCeEE
Q 000452 1328 IPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILM 1407 (1495)
Q Consensus 1328 IpQdp~LF~GTIR~NLdp~~~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALLr~~~ILi 1407 (1495)
+||+|.+|++|+++|+ ||+|||||++||||++++|++|+
T Consensus 81 ~~~~~~~~~~t~~e~l-----------------------------------------LS~G~~~rl~la~al~~~p~lll 119 (171)
T cd03228 81 VPQDPFLFSGTIRENI-----------------------------------------LSGGQRQRIAIARALLRDPPILI 119 (171)
T ss_pred EcCCchhccchHHHHh-----------------------------------------hCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999998 89999999999999999999999
Q ss_pred EEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhccCEEEEEeCcE
Q 000452 1408 LDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGL 1459 (1495)
Q Consensus 1408 LDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~ 1459 (1495)
|||||++||+++...+.+.|++..+++|+|+++|+++.+..||++++|++|+
T Consensus 120 lDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 120 LDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred EECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 9999999999999999999998877899999999999998899999999985
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-37 Score=366.88 Aligned_cols=212 Identities=23% Similarity=0.382 Sum_probs=181.9
Q ss_pred eeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCC----HHHHhcccEE
Q 000452 1252 DLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIG----LHDLRTRLSI 1327 (1495)
Q Consensus 1252 nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~----l~~LR~~isi 1327 (1495)
|++++|... .+ |+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ....|++++|
T Consensus 4 ~l~~~~~~~---~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~ 79 (354)
T TIGR02142 4 RFSKRLGDF---SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGY 79 (354)
T ss_pred EEEEEECCE---EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEE
Confidence 889999642 24 999999999999999999999999999999999999999999999987542 3456889999
Q ss_pred EcccCcCCCC-cHHHhcCCC-CCCC----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHcc
Q 000452 1328 IPQDPVMFEG-TVRSNVDPL-EEYT----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLK 1401 (1495)
Q Consensus 1328 IpQdp~LF~G-TIR~NLdp~-~~~s----d~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALLr 1401 (1495)
+||+|.+|.+ |+++|+... .... ++++.++++..++.+...+. ...||||||||++|||||++
T Consensus 80 v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-----------~~~LSgGqkqRvalAraL~~ 148 (354)
T TIGR02142 80 VFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRL-----------PGRLSGGEKQRVAIGRALLS 148 (354)
T ss_pred EecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCC-----------hhhCCHHHHHHHHHHHHHHc
Confidence 9999999976 999999732 2111 23477788888876554433 35799999999999999999
Q ss_pred CCCeEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecCchhhhc-cCEEEEEeCcEEEEecChhHHhhcCCChHH
Q 000452 1402 RRKILMLDEATASVDTATDNLIQQSLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLENKSSSFS 1478 (1495)
Q Consensus 1402 ~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~Ll~~~~s~f~ 1478 (1495)
+|++|+|||||++||+.+...+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+|+++..++...|.
T Consensus 149 ~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~ 228 (354)
T TIGR02142 149 SPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDLPWL 228 (354)
T ss_pred CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCcCcccc
Confidence 9999999999999999999999999998653 7899999999999875 999999999999999999999987665443
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-37 Score=330.46 Aligned_cols=170 Identities=31% Similarity=0.520 Sum_probs=157.8
Q ss_pred EEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccEE
Q 000452 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSI 1327 (1495)
Q Consensus 1248 I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~isi 1327 (1495)
++++|++++|+. .++|+|+||+|++||.++|+|++|||||||+++|.|+++|++|+|.+||.++.+.+ .++|++++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (173)
T cd03230 1 IEVRNLSKRYGK--KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIGY 77 (173)
T ss_pred CEEEEEEEEECC--eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEEE
Confidence 478999999964 25999999999999999999999999999999999999999999999999998766 678899999
Q ss_pred EcccCcCCCC-cHHHhcCCCCCCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCeE
Q 000452 1328 IPQDPVMFEG-TVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKIL 1406 (1495)
Q Consensus 1328 IpQdp~LF~G-TIR~NLdp~~~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALLr~~~IL 1406 (1495)
+||+|.+|.+ |+++|+. ||+|||||++|||||+++|+||
T Consensus 78 ~~q~~~~~~~~tv~~~~~----------------------------------------LS~G~~qrv~laral~~~p~il 117 (173)
T cd03230 78 LPEEPSLYENLTVRENLK----------------------------------------LSGGMKQRLALAQALLHDPELL 117 (173)
T ss_pred EecCCccccCCcHHHHhh----------------------------------------cCHHHHHHHHHHHHHHcCCCEE
Confidence 9999999987 9999974 8999999999999999999999
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhh-ccCEEEEEeCcEE
Q 000452 1407 MLDEATASVDTATDNLIQQSLRQHF-SDCTVITIAHRITSVI-DSDMVLLLSHGLI 1460 (1495)
Q Consensus 1407 iLDEaTsslD~~Td~~Iq~~Ir~~f-~~~TVI~IAHRl~ti~-~~DrIlVL~~G~i 1460 (1495)
+|||||++||..+...+.+.|++.. ++.|+|+++|+.+.+. .||+|++|++|++
T Consensus 118 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 118 ILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 9999999999999999999999865 3689999999999888 5999999999974
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-34 Score=319.27 Aligned_cols=502 Identities=17% Similarity=0.154 Sum_probs=337.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCc--chhHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 000452 292 IKAMFRSVWKDVLLTALVAIVCTLATYVGPYLIDTLVQYLSGKRDF--ENEGYAL--VSAFCVAKLVECLCQRFFVFRLE 367 (1495)
Q Consensus 292 ~~al~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~--~~~g~~l--~~~l~~~~~~~~~~~~~~~~~~~ 367 (1495)
.-.++|.+++.++....+.+...+ ++..++-.+-+++-+.... ..-.++. ...++++..+ ++.- ..
T Consensus 4 ll~llr~nr~~~i~~~a~s~a~g~---~g~~lLa~in~al~e~~~~~~~~l~~f~~llllf~~ss~i---s~lg----~t 73 (546)
T COG4615 4 LLLLLRQNRWPFISVMALSLASGA---LGIGLLAFINQALIETADTSLLVLPEFLGLLLLFMVSSLI---SQLG----LT 73 (546)
T ss_pred HHHHhcccccHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhcccceeeHHHHHHHHHHHHHHHHH---HHHH----HH
Confidence 456788888887766555554443 3334444444444332211 1111111 1112222222 2222 22
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcchhcCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000452 368 QLGIRLRAALIAMIYNKGLKLSSQAKQGNTSGEIINFMTVDAERVAELSWYIHDPWLFLFEVALSFLILYKSLGIASVAA 447 (1495)
Q Consensus 368 ~~g~rir~~L~~~iy~K~L~ls~~~~~~~~~G~i~nl~s~D~~~i~~~~~~~~~~w~~pl~i~~~~~lL~~~lG~~~l~g 447 (1495)
-+|.++-..+...+-+|.+.-+....++.+++.++..++.|+..|.-.+..+.++-.+.+-...++..|++.-+..++..
T Consensus 74 ~~gq~~I~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~ISf~~s~lp~~~qa~il~l~s~aYLayLSp~mf~l~ 153 (546)
T COG4615 74 TLGQHFIYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNISFAFSRLPELVQAIILTLGSAAYLAYLSPKMFLLT 153 (546)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHhcccchhhhhcccccceeehHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 23333444444556677787777777778899999999999999997777777777777767777778887888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHH--HHHH-HHHHHHHHHHHHHHHHHHH
Q 000452 448 FFGTVIFMLVNVPLSTVQEKFQNELMKSKDERMKATSEILRNMRILKLQGWELK--FLSK-TIDLRKSESGWLKRCLYTS 524 (1495)
Q Consensus 448 l~~~i~~~~~~~~~~~~~~~~~~~~m~~~D~R~~~~~E~L~~ir~IK~~~wE~~--f~~~-i~~~R~~E~~~l~~~~~~~ 524 (1495)
++.+++.+..+.+...+.-++..+..+.-|+-.+..+.++.|-|.+|++.-... +.+. +.+.++.+-. ..+..
T Consensus 154 vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~~~~~a~~~r~~----~~~~n 229 (546)
T COG4615 154 VVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQEYRHH----IIRAN 229 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhhcCcchHHHHhh----hhhhh
Confidence 888888888888877777777778888889999999999999999998763322 1111 1112222211 11111
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHhcCCc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 000452 525 SIT-SFVFWCAPTFVSVITFGTCILLKVPL-ESGKVLSAIATFRLLQILIYKLPAIISMTIQTKVSLQRIASFFCLDELQ 602 (1495)
Q Consensus 525 ~~~-~~~~~~~p~~v~~~~f~~~~~~~~~L-~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~ 602 (1495)
.+. ....|....+.+++....|+...-.. +...+.|.....-.++.|+.+....++.+.+|.++++||.++=..|+..
T Consensus 230 ~f~~la~~~~ni~l~~lIGlvf~lal~~~w~st~~a~tivlvlLflr~pL~s~vgilP~l~~AqvA~~kiakle~~~~~a 309 (546)
T COG4615 230 TFHLLAVNWSNIMLLGLIGLVFWLALSLGWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPYKA 309 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHhhcCCccc
Confidence 111 23345555554444433333332222 1224445555566789999999999999999999999999975544332
Q ss_pred cccccCCCCCCCcccEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe
Q 000452 603 PDLVEKQPRGSSETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT 682 (1495)
Q Consensus 603 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~ 682 (1495)
.- ...++. ++-..++++|+.|+|... ..-+..||++|++||++.|+|.||||||||++++.|+++|++|+|.+||+
T Consensus 310 ~~-~~~q~~-p~~~~lelrnvrfay~~~--~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~ 385 (546)
T COG4615 310 DF-PRPQAF-PDWKTLELRNVRFAYQDN--AFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGK 385 (546)
T ss_pred cC-CCCCcC-CcccceeeeeeeeccCcc--cceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCc
Confidence 21 111111 123469999999999743 37789999999999999999999999999999999999999999999996
Q ss_pred E-------------EEEccCCcccCccHHHHHhcCCC-CCHHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHH
Q 000452 683 K-------------AYVAQSPWIQSGKIEDNILFGKE-MDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQK 748 (1495)
Q Consensus 683 ~-------------ayv~Q~~~l~~~ti~enI~fg~~-~~~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 748 (1495)
. +-|+-+-|+|+.++ -+.. -.++..+.-++...+....+ +.+|.-+ ...||.|||
T Consensus 386 pV~~e~ledYR~LfSavFsDyhLF~~ll-----~~e~~as~q~i~~~LqrLel~~kts-l~d~~fs-----~~kLStGQk 454 (546)
T COG4615 386 PVSAEQLEDYRKLFSAVFSDYHLFDQLL-----GPEGKASPQLIEKWLQRLELAHKTS-LNDGRFS-----NLKLSTGQK 454 (546)
T ss_pred cCCCCCHHHHHHHHHHHhhhHhhhHhhh-----CCccCCChHHHHHHHHHHHHhhhhc-ccCCccc-----ccccccchH
Confidence 3 12333344443221 1122 34555666666555544332 2233222 247999999
Q ss_pred HHHHHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCccccCCEEEEEeCCEEEEe
Q 000452 749 QRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL-NSKTVLYVTHQVEFLPAADLVLVIKDGKITQA 822 (1495)
Q Consensus 749 qRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvIlvTH~~~~l~~~d~i~~l~~G~i~~~ 822 (1495)
.|+++--|+.-+.|||+|||=-+--||+-++..++..+-.++ .||||+.||||-.+...|||++.|++|++++.
T Consensus 455 KRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e~ 529 (546)
T COG4615 455 KRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 529 (546)
T ss_pred HHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHHHhcCceeec
Confidence 999999999999999999999999999999988887764443 59999999999999999999999999999864
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=346.83 Aligned_cols=221 Identities=20% Similarity=0.329 Sum_probs=183.1
Q ss_pred eEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEe-----CCCCCHHH-
Q 000452 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGID-----ISLIGLHD- 1320 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~d-----I~~i~l~~- 1320 (1495)
.|+++||+++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+ +..++..+
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (253)
T TIGR02323 3 LLQVSGLSKSYGG--GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAER 80 (253)
T ss_pred eEEEeeeEEEeCC--ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHH
Confidence 5899999999964 348999999999999999999999999999999999999999999999988 77776543
Q ss_pred ---HhcccEEEcccCc--C-CCCcHHHhcC----CCCC----CCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCC
Q 000452 1321 ---LRTRLSIIPQDPV--M-FEGTVRSNVD----PLEE----YTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWS 1386 (1495)
Q Consensus 1321 ---LR~~isiIpQdp~--L-F~GTIR~NLd----p~~~----~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS 1386 (1495)
++++++++||+|. + +..|+.+|+. .... ..++++.+.+++.++.+ +.......+||
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----------~~~~~~~~~LS 150 (253)
T TIGR02323 81 RRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDP----------TRIDDLPRAFS 150 (253)
T ss_pred HHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCCh----------hhhhcCchhcC
Confidence 3467999999985 2 3458888873 1111 12345666666666542 12233456899
Q ss_pred chHHHHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecCchhhhc-cCEEEEEeCcEEEEe
Q 000452 1387 MGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGLIEEY 1463 (1495)
Q Consensus 1387 ~GQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~ 1463 (1495)
+|||||++|||||+++|++|+|||||++||+.+...+.+.|++..+ +.|+|+|+|+++.+.. ||++++|++|++++.
T Consensus 151 gG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~ 230 (253)
T TIGR02323 151 GGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVES 230 (253)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999988643 7899999999999985 999999999999999
Q ss_pred cChhHHhhcCCChHHH
Q 000452 1464 DSPRKLLENKSSSFSQ 1479 (1495)
Q Consensus 1464 gsp~~Ll~~~~s~f~~ 1479 (1495)
|+++++..++...|.+
T Consensus 231 ~~~~~~~~~~~~~~~~ 246 (253)
T TIGR02323 231 GLTDQVLDDPQHPYTQ 246 (253)
T ss_pred CCHHHHhcCCCCHHHH
Confidence 9999998665444543
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-37 Score=363.71 Aligned_cols=202 Identities=33% Similarity=0.407 Sum_probs=173.1
Q ss_pred cEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe-----------EEE
Q 000452 617 AIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-----------KAY 685 (1495)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~-----------~ay 685 (1495)
.++++|++++|+ ++++|+|+||++++||+++|+|||||||||||++|+|+.+|++|+|.++|. ++|
T Consensus 4 ~l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~ 80 (353)
T TIGR03265 4 YLSIDNIRKRFG---AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGI 80 (353)
T ss_pred EEEEEEEEEEeC---CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 589999999996 356899999999999999999999999999999999999999999999883 699
Q ss_pred EccCCcccC-ccHHHHHhcCCC---CC----HHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHHHHHh
Q 000452 686 VAQSPWIQS-GKIEDNILFGKE---MD----RERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARAL 757 (1495)
Q Consensus 686 v~Q~~~l~~-~ti~enI~fg~~---~~----~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl 757 (1495)
|+|++.+|. .|++|||.|+.. .+ +++.+++++..+|.+. ..+++.+|||||||||+|||||
T Consensus 81 v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~-----------~~~~~~~LSgGq~QRvaLARaL 149 (353)
T TIGR03265 81 VFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGS-----------ERKYPGQLSGGQQQRVALARAL 149 (353)
T ss_pred EeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCch-----------hhCChhhCCHHHHHHHHHHHHH
Confidence 999999885 699999999743 22 2344555665555432 2467889999999999999999
Q ss_pred ccCCCEeEecCcCCccCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCccc-cCCEEEEEeCCEEEEecChHHHHhcC
Q 000452 758 YQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLN-SKTVLYVTHQVEFLP-AADLVLVIKDGKITQAGKYTDVINSG 832 (1495)
Q Consensus 758 ~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvIlvTH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 832 (1495)
+.+|+++|||||||+||+.+.+++.+.+.....+ +.|+|+||||.+++. .||+|++|++|++++.|+++++.+..
T Consensus 150 ~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p 226 (353)
T TIGR03265 150 ATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHP 226 (353)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 9999999999999999999998887654433333 789999999999875 49999999999999999999998653
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=355.00 Aligned_cols=202 Identities=26% Similarity=0.440 Sum_probs=171.2
Q ss_pred EEEEeeEEEecCCC--CCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe-------------
Q 000452 618 IEIADGNFSWDISS--HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------- 682 (1495)
Q Consensus 618 i~~~~~~~~~~~~~--~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~------------- 682 (1495)
|+++|++|+|+... .+++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.++|.
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999996321 136999999999999999999999999999999999999999999999873
Q ss_pred ----EEEEccCC--cccCccHHHHHhcCCC---CCH----HHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHH
Q 000452 683 ----KAYVAQSP--WIQSGKIEDNILFGKE---MDR----ERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQ 749 (1495)
Q Consensus 683 ----~ayv~Q~~--~l~~~ti~enI~fg~~---~~~----~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkq 749 (1495)
++||+|+| .++..|+.||+.|+.. .++ +++.++++..+|.+++ .++.+.+|||||||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~----------~~~~~~~LSgGqkq 151 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEF----------WEKSPFELSGGQMR 151 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhh----------ccCCcccCCHHHHH
Confidence 58999998 6788899999998743 222 3455566666664322 24677899999999
Q ss_pred HHHHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHH-hCCCEEEEEecCCCccc-cCCEEEEEeCCEEEEecChHH
Q 000452 750 RIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL-LNSKTVLYVTHQVEFLP-AADLVLVIKDGKITQAGKYTD 827 (1495)
Q Consensus 750 Rv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~~~~tvIlvTH~~~~l~-~~d~i~~l~~G~i~~~g~~~~ 827 (1495)
|++|||||+.+|+++||||||++||+.+.+.+.+ ++..+ .+|+|||++||+++++. .||+|++|++|++++.|++++
T Consensus 152 rvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~-~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~ 230 (288)
T PRK13643 152 RVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQ-LFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSD 230 (288)
T ss_pred HHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHH-HHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999888875 44444 35899999999999886 499999999999999999999
Q ss_pred HHh
Q 000452 828 VIN 830 (1495)
Q Consensus 828 l~~ 830 (1495)
+..
T Consensus 231 ~~~ 233 (288)
T PRK13643 231 VFQ 233 (288)
T ss_pred HHc
Confidence 864
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-37 Score=326.88 Aligned_cols=220 Identities=24% Similarity=0.398 Sum_probs=184.9
Q ss_pred eEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHH-Hhccc
Q 000452 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHD-LRTRL 1325 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~-LR~~i 1325 (1495)
-++++|++..|.+ -.+|+||||++++||.++++||||+|||||+++|+|+.+|.+|+|.++|.||+..+.|+ .|..|
T Consensus 3 mL~v~~l~~~YG~--~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi 80 (237)
T COG0410 3 MLEVENLSAGYGK--IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGI 80 (237)
T ss_pred ceeEEeEeecccc--eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCe
Confidence 3789999999976 35999999999999999999999999999999999999999999999999999999888 58889
Q ss_pred EEEcccCcCCCC-cHHHhcCCCCC-CCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCC
Q 000452 1326 SIIPQDPVMFEG-TVRSNVDPLEE-YTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRR 1403 (1495)
Q Consensus 1326 siIpQdp~LF~G-TIR~NLdp~~~-~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALLr~~ 1403 (1495)
+||||...+|.. ||.|||..... ..+++-++. . -|.+-++---|...-...+.+|||||+|.++|||||..+|
T Consensus 81 ~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~----~-~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~P 155 (237)
T COG0410 81 AYVPEGRRIFPRLTVEENLLLGAYARRDKEAQER----D-LEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRP 155 (237)
T ss_pred EeCcccccchhhCcHHHHHhhhhhcccccccccc----c-HHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCC
Confidence 999999999977 99999973211 111111110 0 0111122223444455667899999999999999999999
Q ss_pred CeEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecCchhhh-ccCEEEEEeCcEEEEecChhHHhhcC
Q 000452 1404 KILMLDEATASVDTATDNLIQQSLRQHFS--DCTVITIAHRITSVI-DSDMVLLLSHGLIEEYDSPRKLLENK 1473 (1495)
Q Consensus 1404 ~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~--~~TVI~IAHRl~ti~-~~DrIlVL~~G~ivE~gsp~~Ll~~~ 1473 (1495)
|+|+|||||.+|-|.--+.|.++|++..+ +-||+.|-++..... -+||.+||++|+|+..|++++|++++
T Consensus 156 klLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~ 228 (237)
T COG0410 156 KLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADP 228 (237)
T ss_pred CEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCH
Confidence 99999999999999999999999998864 459999999998765 59999999999999999999999764
|
|
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=336.18 Aligned_cols=185 Identities=24% Similarity=0.339 Sum_probs=164.4
Q ss_pred EEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcc--ccCCccEEEEcCEeCCCCCHHHH-hcc
Q 000452 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRI--VEPAAGQILIDGIDISLIGLHDL-RTR 1324 (1495)
Q Consensus 1248 I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl--~ep~~G~I~IDG~dI~~i~l~~L-R~~ 1324 (1495)
++++|++++|+. .++|+|+||+|++||.+||+|++|||||||+++|.|+ ++|++|+|.+||.++.+.+.... |.+
T Consensus 1 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (200)
T cd03217 1 LEIKDLHVSVGG--KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLG 78 (200)
T ss_pred CeEEEEEEEeCC--EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCc
Confidence 478999999963 3599999999999999999999999999999999999 58999999999999998876654 567
Q ss_pred cEEEcccCcCCCC-cHHHhcCCCCCCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCC
Q 000452 1325 LSIIPQDPVMFEG-TVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRR 1403 (1495)
Q Consensus 1325 isiIpQdp~LF~G-TIR~NLdp~~~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALLr~~ 1403 (1495)
++|+||+|.+|.+ |+++|++ . ...+||+|||||++||||++++|
T Consensus 79 i~~v~q~~~~~~~~~~~~~l~------------------------~-----------~~~~LS~G~~qrv~laral~~~p 123 (200)
T cd03217 79 IFLAFQYPPEIPGVKNADFLR------------------------Y-----------VNEGFSGGEKKRNEILQLLLLEP 123 (200)
T ss_pred EEEeecChhhccCccHHHHHh------------------------h-----------ccccCCHHHHHHHHHHHHHhcCC
Confidence 9999999999987 6666650 0 11469999999999999999999
Q ss_pred CeEEEEcCCCCCCHHHHHHHHHHHHHhcC-CcEEEEEecCchhhh--ccCEEEEEeCcEEEEecChhHHh
Q 000452 1404 KILMLDEATASVDTATDNLIQQSLRQHFS-DCTVITIAHRITSVI--DSDMVLLLSHGLIEEYDSPRKLL 1470 (1495)
Q Consensus 1404 ~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~-~~TVI~IAHRl~ti~--~~DrIlVL~~G~ivE~gsp~~Ll 1470 (1495)
+||+|||||++||..+...+.+.|++..+ ++|+|+++|+++.+. .||+|++|++|++++.| +.++.
T Consensus 124 ~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~-~~~~~ 192 (200)
T cd03217 124 DLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSG-DKELA 192 (200)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEc-cHHHH
Confidence 99999999999999999999999988643 789999999999998 59999999999999999 66665
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=355.11 Aligned_cols=203 Identities=25% Similarity=0.425 Sum_probs=171.8
Q ss_pred EEEEeeEEEecCCC--CCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe-------------
Q 000452 618 IEIADGNFSWDISS--HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------- 682 (1495)
Q Consensus 618 i~~~~~~~~~~~~~--~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~------------- 682 (1495)
++++|++++|+... ..++|+|+||+|++||+++|+|+||||||||+++|+|+.+|++|+|.++|.
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999996322 246999999999999999999999999999999999999999999999873
Q ss_pred ----EEEEccCC--cccCccHHHHHhcCCC---CCH----HHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHH
Q 000452 683 ----KAYVAQSP--WIQSGKIEDNILFGKE---MDR----ERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQ 749 (1495)
Q Consensus 683 ----~ayv~Q~~--~l~~~ti~enI~fg~~---~~~----~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkq 749 (1495)
++||+|+| .+++.|++|||.|+.. .+. ++.+++++.++|.+++. ..++.+|||||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~----------~~~~~~LSgGq~q 152 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELL----------ARSPFELSGGQMR 152 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhh----------hCCcccCCHHHHH
Confidence 58999998 5778899999998732 222 34566677777653331 3567899999999
Q ss_pred HHHHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHH-h-CCCEEEEEecCCCcccc-CCEEEEEeCCEEEEecChH
Q 000452 750 RIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL-L-NSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYT 826 (1495)
Q Consensus 750 Rv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~-~~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 826 (1495)
|++|||||+.+|+++||||||++||+.+...+.+. +..+ . .|.|||++||+++.+.. ||+|++|++|++++.|+++
T Consensus 153 rv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~-L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~ 231 (290)
T PRK13634 153 RVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEM-FYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPR 231 (290)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999998888754 4444 3 38999999999999765 9999999999999999998
Q ss_pred HHHhc
Q 000452 827 DVINS 831 (1495)
Q Consensus 827 ~l~~~ 831 (1495)
++.+.
T Consensus 232 ~~~~~ 236 (290)
T PRK13634 232 EIFAD 236 (290)
T ss_pred HHhcC
Confidence 87643
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=363.12 Aligned_cols=203 Identities=28% Similarity=0.374 Sum_probs=173.5
Q ss_pred ccEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe-----------EE
Q 000452 616 TAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-----------KA 684 (1495)
Q Consensus 616 ~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~-----------~a 684 (1495)
..++++|++++|. ++++|+|+||++++||+++|+|||||||||||++|+|+.+|++|+|.++|. ++
T Consensus 13 ~~L~l~~l~~~~~---~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig 89 (375)
T PRK09452 13 PLVELRGISKSFD---GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVN 89 (375)
T ss_pred ceEEEEEEEEEEC---CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEE
Confidence 4589999999995 356899999999999999999999999999999999999999999999984 69
Q ss_pred EEccCCcccC-ccHHHHHhcCCCC---C----HHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHHHHH
Q 000452 685 YVAQSPWIQS-GKIEDNILFGKEM---D----RERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARA 756 (1495)
Q Consensus 685 yv~Q~~~l~~-~ti~enI~fg~~~---~----~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARA 756 (1495)
||+|++.++. .||+|||.|+... + +++.+++++.+++.+.+ .++..+|||||||||+||||
T Consensus 90 ~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~p~~LSgGq~QRVaLARa 158 (375)
T PRK09452 90 TVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFA-----------QRKPHQLSGGQQQRVAIARA 158 (375)
T ss_pred EEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhh-----------hCChhhCCHHHHHHHHHHHH
Confidence 9999998885 5999999997532 2 23445566666665433 35668999999999999999
Q ss_pred hccCCCEeEecCcCCccCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCccc-cCCEEEEEeCCEEEEecChHHHHhcC
Q 000452 757 LYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL-NSKTVLYVTHQVEFLP-AADLVLVIKDGKITQAGKYTDVINSG 832 (1495)
Q Consensus 757 l~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvIlvTH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 832 (1495)
|+.+|+++|||||||+||++..+.+.+.+..-.. .+.|+|+||||.+++. .||+|++|++|+|.+.|+++++....
T Consensus 159 L~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p 236 (375)
T PRK09452 159 VVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEP 236 (375)
T ss_pred HhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 9999999999999999999998888765433333 3899999999999865 59999999999999999999987654
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-37 Score=330.50 Aligned_cols=172 Identities=33% Similarity=0.508 Sum_probs=159.4
Q ss_pred EEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCC--HHHHhccc
Q 000452 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIG--LHDLRTRL 1325 (1495)
Q Consensus 1248 I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~--l~~LR~~i 1325 (1495)
|+++|++++|+. .++++|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+ ....|+.+
T Consensus 1 i~~~~l~~~~~~--~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (178)
T cd03229 1 LELKNVSKRYGQ--KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRI 78 (178)
T ss_pred CEEEEEEEEECC--eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcE
Confidence 578999999964 35999999999999999999999999999999999999999999999999998876 56788999
Q ss_pred EEEcccCcCCCC-cHHHhcCCCCCCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCC
Q 000452 1326 SIIPQDPVMFEG-TVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRK 1404 (1495)
Q Consensus 1326 siIpQdp~LF~G-TIR~NLdp~~~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALLr~~~ 1404 (1495)
+|+||+|.+|.+ |+++|+... ||+|||||++|||||+++|+
T Consensus 79 ~~~~q~~~~~~~~t~~~~l~~~--------------------------------------lS~G~~qr~~la~al~~~p~ 120 (178)
T cd03229 79 GMVFQDFALFPHLTVLENIALG--------------------------------------LSGGQQQRVALARALAMDPD 120 (178)
T ss_pred EEEecCCccCCCCCHHHheeec--------------------------------------CCHHHHHHHHHHHHHHCCCC
Confidence 999999998865 999998743 89999999999999999999
Q ss_pred eEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecCchhhhc-cCEEEEEeCcE
Q 000452 1405 ILMLDEATASVDTATDNLIQQSLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGL 1459 (1495)
Q Consensus 1405 ILiLDEaTsslD~~Td~~Iq~~Ir~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~ 1459 (1495)
+++|||||++||+.+...+.+.|++..+ ++|+|+++|+++.+.+ ||+|++|++|+
T Consensus 121 llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 121 VLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 9999999999999999999999998754 5899999999999985 99999999985
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=345.36 Aligned_cols=208 Identities=28% Similarity=0.412 Sum_probs=180.9
Q ss_pred eEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccE
Q 000452 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLS 1326 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~is 1326 (1495)
.++++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++| +..++
T Consensus 4 ~l~~~~l~~~~~~--~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i~ 70 (251)
T PRK09544 4 LVSLENVSVSFGQ--RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRIG 70 (251)
T ss_pred EEEEeceEEEECC--ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCEE
Confidence 5899999999964 3599999999999999999999999999999999999999999999987 35799
Q ss_pred EEcccCcCCC---CcHHHhcCCCCCCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCC
Q 000452 1327 IIPQDPVMFE---GTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRR 1403 (1495)
Q Consensus 1327 iIpQdp~LF~---GTIR~NLdp~~~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALLr~~ 1403 (1495)
|+||+|.++. .|+++|+......+++++.++++.+++.+..... ...||+|||||++||||++++|
T Consensus 71 ~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LSgGq~qrv~laral~~~p 139 (251)
T PRK09544 71 YVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAP-----------MQKLSGGETQRVLLARALLNRP 139 (251)
T ss_pred EeccccccccccChhHHHHHhccccccHHHHHHHHHHcCChHHHhCC-----------hhhCCHHHHHHHHHHHHHhcCC
Confidence 9999998765 3899997543345678899999999987665432 3579999999999999999999
Q ss_pred CeEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecCchhhhc-cCEEEEEeCcEEEEecChhHHhhcCCChHHHH
Q 000452 1404 KILMLDEATASVDTATDNLIQQSLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLENKSSSFSQL 1480 (1495)
Q Consensus 1404 ~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~Ll~~~~s~f~~l 1480 (1495)
++|+|||||++||+.+...+.+.|++..+ ++|||+|+|+++.+.. ||+|++|++ ++++.|+++++.++ ..|.++
T Consensus 140 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~~--~~~~~~ 216 (251)
T PRK09544 140 QLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSLH--PEFISM 216 (251)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhCC--HHHHHH
Confidence 99999999999999999999999987653 7899999999999865 999999965 79999999998743 445554
Q ss_pred H
Q 000452 1481 V 1481 (1495)
Q Consensus 1481 v 1481 (1495)
.
T Consensus 217 ~ 217 (251)
T PRK09544 217 F 217 (251)
T ss_pred h
Confidence 3
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=344.78 Aligned_cols=198 Identities=32% Similarity=0.445 Sum_probs=167.3
Q ss_pred EEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe-----------EEEE
Q 000452 618 IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-----------KAYV 686 (1495)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~-----------~ayv 686 (1495)
++++|+++.|+ ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|+
T Consensus 3 l~~~~l~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v 79 (239)
T cd03296 3 IEVRNVSKRFG---DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFV 79 (239)
T ss_pred EEEEeEEEEEC---CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEE
Confidence 78999999995 257999999999999999999999999999999999999999999999872 6899
Q ss_pred ccCCcccC-ccHHHHHhcCCCC-------CH----HHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHHH
Q 000452 687 AQSPWIQS-GKIEDNILFGKEM-------DR----ERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIA 754 (1495)
Q Consensus 687 ~Q~~~l~~-~ti~enI~fg~~~-------~~----~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LA 754 (1495)
+|+|.++. .|++||+.++... +. ++.++.++.+++.+. ......+||||||||++||
T Consensus 80 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl~la 148 (239)
T cd03296 80 FQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWL-----------ADRYPAQLSGGQRQRVALA 148 (239)
T ss_pred ecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhh-----------hhcChhhCCHHHHHHHHHH
Confidence 99998875 6999999886421 11 223444555555332 2456789999999999999
Q ss_pred HHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHH-hC-CCEEEEEecCCCcccc-CCEEEEEeCCEEEEecChHHHHh
Q 000452 755 RALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL-LN-SKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYTDVIN 830 (1495)
Q Consensus 755 RAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~~-~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 830 (1495)
||++.+|+++||||||++||+++.+.+.+ ++... .+ ++|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 149 ~al~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (239)
T cd03296 149 RALAVEPKVLLLDEPFGALDAKVRKELRR-WLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYD 226 (239)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhc
Confidence 99999999999999999999999888875 45444 33 7899999999998765 99999999999999999988754
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=342.23 Aligned_cols=227 Identities=25% Similarity=0.416 Sum_probs=186.2
Q ss_pred EEEeeeeEEeCCCC--CcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccc-C----CccEEEEcCEeCCCCCHHH
Q 000452 1248 IDLRDLQVRYAPHM--PFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVE-P----AAGQILIDGIDISLIGLHD 1320 (1495)
Q Consensus 1248 I~f~nv~~~Y~~~~--~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~e-p----~~G~I~IDG~dI~~i~l~~ 1320 (1495)
++++|+++.|..+. -.+++||||+|++||.+||||.|||||||+.++++|+++ | .+|+|.+||.|+.+++-+.
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 57899999997643 369999999999999999999999999999999999998 4 5799999999999999875
Q ss_pred Hh----cccEEEcccCcC-CCC--cHHHhcC----CCCCC-C----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCC
Q 000452 1321 LR----TRLSIIPQDPVM-FEG--TVRSNVD----PLEEY-T----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGEN 1384 (1495)
Q Consensus 1321 LR----~~isiIpQdp~L-F~G--TIR~NLd----p~~~~-s----d~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~n 1384 (1495)
+| +.|++|||||.- |+- ||.+-+. -.... + .++..+.|+++++.+--+. +..-...
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~--------~~~YPhe 153 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERR--------LKSYPHE 153 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHH--------HhhCCcc
Confidence 43 479999999942 221 4444331 11111 1 3467888999998753111 1122357
Q ss_pred CCchHHHHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCchhhhc-cCEEEEEeCcEEE
Q 000452 1385 WSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHF--SDCTVITIAHRITSVID-SDMVLLLSHGLIE 1461 (1495)
Q Consensus 1385 LS~GQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f--~~~TVI~IAHRl~ti~~-~DrIlVL~~G~iv 1461 (1495)
||||||||+.||-||+.+|++||-||||++||..+.+.|.+.|++.- .+.|+|+|||++..+.. ||||.||.+|+||
T Consensus 154 lSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iV 233 (316)
T COG0444 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIV 233 (316)
T ss_pred cCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEE
Confidence 89999999999999999999999999999999999999999998876 48999999999999876 9999999999999
Q ss_pred EecChhHHhhcCCChHHHHHH
Q 000452 1462 EYDSPRKLLENKSSSFSQLVA 1482 (1495)
Q Consensus 1462 E~gsp~~Ll~~~~s~f~~lv~ 1482 (1495)
|.|+.+++++++.--|.+..-
T Consensus 234 E~g~~~~i~~~P~HPYT~~Ll 254 (316)
T COG0444 234 EEGPVEEIFKNPKHPYTRGLL 254 (316)
T ss_pred EeCCHHHHhcCCCChHHHHHH
Confidence 999999999988766665443
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-37 Score=336.62 Aligned_cols=217 Identities=26% Similarity=0.406 Sum_probs=190.3
Q ss_pred eEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCE---eCCCCCHHHHhc
Q 000452 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGI---DISLIGLHDLRT 1323 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~---dI~~i~l~~LR~ 1323 (1495)
.|+++|++..|+.- .+++|||++|+.||.+|+.||||||||||++++.|+..|++|+|.+||. |.+++..+ .+
T Consensus 2 ~i~i~~~~~~~~~~--~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~--~R 77 (345)
T COG1118 2 SIRINNVKKRFGAF--GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVR--DR 77 (345)
T ss_pred ceeehhhhhhcccc--cccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchh--hc
Confidence 47788888888643 4899999999999999999999999999999999999999999999999 88874444 46
Q ss_pred ccEEEcccCcCCCC-cHHHhcCCCC---------CCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHH
Q 000452 1324 RLSIIPQDPVMFEG-TVRSNVDPLE---------EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLV 1393 (1495)
Q Consensus 1324 ~isiIpQdp~LF~G-TIR~NLdp~~---------~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl 1393 (1495)
+||+|.||..||.- ||++||.+.- .-.+.++.+.|+.|+|...-+..|. .||||||||+
T Consensus 78 ~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~-----------QLSGGQrQRV 146 (345)
T COG1118 78 KVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPA-----------QLSGGQRQRV 146 (345)
T ss_pred ceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCch-----------hcChHHHHHH
Confidence 79999999999865 9999997432 2335567788999999877666654 6799999999
Q ss_pred HHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecCchhhhc-cCEEEEEeCcEEEEecChhHHh
Q 000452 1394 CLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLL 1470 (1495)
Q Consensus 1394 ~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~Ll 1470 (1495)
+|||||...|++|+||||.++||.+-.+.+++-+++... ++|++.|||+.+.+.. ||||+||++|+|...|+|+|..
T Consensus 147 ALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~ 226 (345)
T COG1118 147 ALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVY 226 (345)
T ss_pred HHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHh
Confidence 999999999999999999999999999999999887653 7999999999987654 9999999999999999999999
Q ss_pred hcCCChHH
Q 000452 1471 ENKSSSFS 1478 (1495)
Q Consensus 1471 ~~~~s~f~ 1478 (1495)
..+++.|-
T Consensus 227 ~~P~s~fV 234 (345)
T COG1118 227 DHPASRFV 234 (345)
T ss_pred cCCCccce
Confidence 98887763
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=354.37 Aligned_cols=204 Identities=25% Similarity=0.436 Sum_probs=170.7
Q ss_pred cEEEEeeEEEecCCC--CCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcC-------------
Q 000452 617 AIEIADGNFSWDISS--HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG------------- 681 (1495)
Q Consensus 617 ~i~~~~~~~~~~~~~--~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g------------- 681 (1495)
.++++|+++.|+... .+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 378999999996322 24799999999999999999999999999999999999999999999987
Q ss_pred --eEEEEccCC--cccCccHHHHHhcCCC---CCH----HHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHH
Q 000452 682 --TKAYVAQSP--WIQSGKIEDNILFGKE---MDR----ERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQR 750 (1495)
Q Consensus 682 --~~ayv~Q~~--~l~~~ti~enI~fg~~---~~~----~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqR 750 (1495)
.++||||+| .+++.|++|||.|+.. .++ ++.+++++.++|. +.+..++.+.+||||||||
T Consensus 82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~---------~~~~~~~~~~~LSgGq~qr 152 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLD---------YEDYKDKSPFELSGGQKRR 152 (287)
T ss_pred hhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCC---------chhhccCCcccCCHHHHHH
Confidence 258999998 5678899999998642 232 2345556666653 1112356788999999999
Q ss_pred HHHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHh-C-CCEEEEEecCCCccc-cCCEEEEEeCCEEEEecChHH
Q 000452 751 IQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL-N-SKTVLYVTHQVEFLP-AADLVLVIKDGKITQAGKYTD 827 (1495)
Q Consensus 751 v~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~-~~tvIlvTH~~~~l~-~~d~i~~l~~G~i~~~g~~~~ 827 (1495)
++|||||+.+|+++||||||++||+.+..++++ ++..+. + |+|||++||+++++. .||+|++|++|++++.|+.++
T Consensus 153 v~iAraL~~~P~llllDEPt~gLD~~~~~~l~~-~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~ 231 (287)
T PRK13637 153 VAIAGVVAMEPKILILDEPTAGLDPKGRDEILN-KIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPRE 231 (287)
T ss_pred HHHHHHHHcCCCEEEEECCccCCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999888875 454443 3 899999999999875 599999999999999999988
Q ss_pred HHh
Q 000452 828 VIN 830 (1495)
Q Consensus 828 l~~ 830 (1495)
+.+
T Consensus 232 ~~~ 234 (287)
T PRK13637 232 VFK 234 (287)
T ss_pred HHh
Confidence 764
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=342.85 Aligned_cols=203 Identities=26% Similarity=0.323 Sum_probs=169.5
Q ss_pred EEEeeeeEEeCCC--CCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccc---CCccEEEEcCEeCCCCCHHHHh
Q 000452 1248 IDLRDLQVRYAPH--MPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVE---PAAGQILIDGIDISLIGLHDLR 1322 (1495)
Q Consensus 1248 I~f~nv~~~Y~~~--~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~e---p~~G~I~IDG~dI~~i~l~~LR 1322 (1495)
++|+||+++|... .+++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. ..+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~---~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKP---DQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECCh---HHhc
Confidence 5799999999765 3679999999999999999999999999999999999999 999999999998753 4678
Q ss_pred cccEEEcccCcCCCC-cHHHhcCCC---C--CCCHH-----HHHH-HHHHcCCcHHHHhccCCcccccccCCCCCCchHH
Q 000452 1323 TRLSIIPQDPVMFEG-TVRSNVDPL---E--EYTDE-----QIWE-ALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQR 1390 (1495)
Q Consensus 1323 ~~isiIpQdp~LF~G-TIR~NLdp~---~--~~sd~-----ei~~-aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQr 1390 (1495)
++++|+||+|.+|.+ |+++|+... . ...++ .+.+ .++..++.+ .......+||+|||
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~ 149 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTR-----------IGGNLVKGISGGER 149 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchh-----------hhcccccCcCHHHH
Confidence 899999999999988 999999631 1 11111 1222 344443322 22334568999999
Q ss_pred HHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCc-hhh-hccCEEEEEeCcEEEEec
Q 000452 1391 QLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHF-SDCTVITIAHRI-TSV-IDSDMVLLLSHGLIEEYD 1464 (1495)
Q Consensus 1391 Qrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f-~~~TVI~IAHRl-~ti-~~~DrIlVL~~G~ivE~g 1464 (1495)
||++|||||+++|+||||||||++||+.+...+.+.|++.. .++|+|+++|++ ..+ ..||+|++|++|++++.|
T Consensus 150 qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 150 RRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999999999998864 478999999998 354 569999999999999875
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-37 Score=314.36 Aligned_cols=193 Identities=26% Similarity=0.392 Sum_probs=168.9
Q ss_pred EEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcC----------------
Q 000452 618 IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG---------------- 681 (1495)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g---------------- 681 (1495)
|+++|+++.|+. .+++|+||||+|++||++.|+||||||||||||+|.++.+|++|+|.++|
T Consensus 2 I~f~~V~k~Y~~--g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 2 IRFENVSKAYPG--GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred eeehhhhhhcCC--CchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 789999999974 36799999999999999999999999999999999999999999999988
Q ss_pred eEEEEccCCcc-cCccHHHHHhcCCCC---C----HHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHH
Q 000452 682 TKAYVAQSPWI-QSGKIEDNILFGKEM---D----RERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQI 753 (1495)
Q Consensus 682 ~~ayv~Q~~~l-~~~ti~enI~fg~~~---~----~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 753 (1495)
++|+|+|+.-+ ...||.||+.|.... . +++..++++..+|.+....+| ..|||||||||+|
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP-----------~~LSGGEQQRvaI 148 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALP-----------SQLSGGEQQRVAI 148 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCc-----------cccCchHHHHHHH
Confidence 36999999865 577999999997542 2 356667888888887776665 7899999999999
Q ss_pred HHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEecCCCcccc-CCEEEEEeCCEEEEec
Q 000452 754 ARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAG 823 (1495)
Q Consensus 754 ARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~~~g 823 (1495)
|||+..+|+++|-||||-+|||..+..|++-+..-...|.||+++|||.+.+.. --+++.+++|+++...
T Consensus 149 ARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 149 ARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDE 219 (223)
T ss_pred HHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecc
Confidence 999999999999999999999999999986433334569999999999999886 6789999999998643
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=351.21 Aligned_cols=203 Identities=29% Similarity=0.449 Sum_probs=172.7
Q ss_pred cEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe-------------E
Q 000452 617 AIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------K 683 (1495)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~-------------~ 683 (1495)
.++++|++++|+....+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|. +
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 589999999996432346999999999999999999999999999999999999999999999883 5
Q ss_pred EEEccCCc--ccCccHHHHHhcCCC---CCH----HHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHHH
Q 000452 684 AYVAQSPW--IQSGKIEDNILFGKE---MDR----ERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIA 754 (1495)
Q Consensus 684 ayv~Q~~~--l~~~ti~enI~fg~~---~~~----~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LA 754 (1495)
+|++|+|. ++..|++|||.|+.. .++ ++..++++.++|++.. .+...+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-----------~~~~~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFK-----------EREPARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHh-----------hCCcccCCHHHHHHHHHH
Confidence 89999984 567799999998742 222 3456667777775433 355689999999999999
Q ss_pred HHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHH-hC-CCEEEEEecCCCccccCCEEEEEeCCEEEEecChHHHHhc
Q 000452 755 RALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL-LN-SKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVINS 831 (1495)
Q Consensus 755 RAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~~-~~tvIlvTH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 831 (1495)
||++.+|+++||||||++||+.+.+.+++ ++... .+ |+|+|++||+++.+..||+|++|++|+++..|+++++...
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~-~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIK-TIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 99999999999999999999999888875 45444 33 8999999999998877999999999999999999887654
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=345.19 Aligned_cols=199 Identities=26% Similarity=0.381 Sum_probs=165.5
Q ss_pred EEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe--------------E
Q 000452 618 IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT--------------K 683 (1495)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~--------------~ 683 (1495)
++++|++++|+ ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|. +
T Consensus 1 l~~~~l~~~~~---~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (236)
T cd03219 1 LEVRGLTKRFG---GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77 (236)
T ss_pred CeeeeeEEEEC---CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCE
Confidence 46789999995 246999999999999999999999999999999999999999999999872 6
Q ss_pred EEEccCCcccCc-cHHHHHhcCCCC-------------C----HHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccch
Q 000452 684 AYVAQSPWIQSG-KIEDNILFGKEM-------------D----RERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSG 745 (1495)
Q Consensus 684 ayv~Q~~~l~~~-ti~enI~fg~~~-------------~----~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSG 745 (1495)
+|++|++.++.. |++||+.++... + .++.++.++.+++. ...+.+..+|||
T Consensus 78 ~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSg 146 (236)
T cd03219 78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLA-----------DLADRPAGELSY 146 (236)
T ss_pred EEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCcc-----------chhhCChhhCCH
Confidence 899999988765 999999876321 0 11223333333332 234577889999
Q ss_pred HHHHHHHHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEecCCCcccc-CCEEEEEeCCEEEEecC
Q 000452 746 GQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGK 824 (1495)
Q Consensus 746 GQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~~~g~ 824 (1495)
|||||++||||++.+|+++||||||++||+.+.+.+++.+.....+++|+|++||+++.+.. ||++++|++|++++.|+
T Consensus 147 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~ 226 (236)
T cd03219 147 GQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGT 226 (236)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecC
Confidence 99999999999999999999999999999999888876443323368999999999999865 99999999999999999
Q ss_pred hHHHHh
Q 000452 825 YTDVIN 830 (1495)
Q Consensus 825 ~~~l~~ 830 (1495)
++++..
T Consensus 227 ~~~~~~ 232 (236)
T cd03219 227 PDEVRN 232 (236)
T ss_pred HHHhcc
Confidence 888753
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=360.75 Aligned_cols=202 Identities=35% Similarity=0.459 Sum_probs=171.5
Q ss_pred cEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe-----------EEE
Q 000452 617 AIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-----------KAY 685 (1495)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~-----------~ay 685 (1495)
.++++|++++|. ++++|+|+||++++||+++|+|||||||||||++|+|+++|++|+|.++|. ++|
T Consensus 2 ~L~i~~l~~~~~---~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~ 78 (353)
T PRK10851 2 SIEIANIKKSFG---RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGF 78 (353)
T ss_pred EEEEEEEEEEeC---CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEE
Confidence 378999999995 256999999999999999999999999999999999999999999999873 699
Q ss_pred EccCCcccC-ccHHHHHhcCCCC-------C----HHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHH
Q 000452 686 VAQSPWIQS-GKIEDNILFGKEM-------D----RERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQI 753 (1495)
Q Consensus 686 v~Q~~~l~~-~ti~enI~fg~~~-------~----~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 753 (1495)
|+|++.++. .|++|||.|+... + +++.++.++..+|.+. ..++..+|||||||||+|
T Consensus 79 v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~-----------~~~~~~~LSgGq~QRval 147 (353)
T PRK10851 79 VFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHL-----------ADRYPAQLSGGQKQRVAL 147 (353)
T ss_pred EecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchh-----------hhCChhhCCHHHHHHHHH
Confidence 999999886 5999999987431 2 1244455555555432 246778999999999999
Q ss_pred HHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCcccc-CCEEEEEeCCEEEEecChHHHHhc
Q 000452 754 ARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLN-SKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYTDVINS 831 (1495)
Q Consensus 754 ARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 831 (1495)
||||+.+|+++|||||||+||+.+.+.+.+.+.....+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 148 ArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~~ 227 (353)
T PRK10851 148 ARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWRE 227 (353)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999999998887654333333 7899999999998765 999999999999999999999765
Q ss_pred C
Q 000452 832 G 832 (1495)
Q Consensus 832 ~ 832 (1495)
.
T Consensus 228 p 228 (353)
T PRK10851 228 P 228 (353)
T ss_pred c
Confidence 3
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=362.28 Aligned_cols=203 Identities=31% Similarity=0.433 Sum_probs=173.3
Q ss_pred ccEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCC--cEEEEcCe-----------
Q 000452 616 TAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKIS--GTLKLCGT----------- 682 (1495)
Q Consensus 616 ~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~--G~v~~~g~----------- 682 (1495)
..++++|++++|. ++++|+|+||++++|++++|+|||||||||||++|+|+.+|++ |+|.++|.
T Consensus 4 ~~l~~~~l~~~~~---~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ 80 (362)
T TIGR03258 4 GGIRIDHLRVAYG---ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRG 80 (362)
T ss_pred eEEEEEEEEEEEC---CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCC
Confidence 3589999999996 2469999999999999999999999999999999999999999 99999883
Q ss_pred EEEEccCCcccC-ccHHHHHhcCCC---CC----HHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHHH
Q 000452 683 KAYVAQSPWIQS-GKIEDNILFGKE---MD----RERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIA 754 (1495)
Q Consensus 683 ~ayv~Q~~~l~~-~ti~enI~fg~~---~~----~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LA 754 (1495)
++||+|++.++. .|++|||.|+.. .+ +++.+++++..+|++.. .++..+|||||||||+||
T Consensus 81 ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~-----------~~~~~~LSgGq~QRvaLA 149 (362)
T TIGR03258 81 LALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAA-----------AHLPAQLSGGMQQRIAIA 149 (362)
T ss_pred EEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchh-----------hCChhhCCHHHHHHHHHH
Confidence 699999998885 599999998743 22 23455556665554333 467789999999999999
Q ss_pred HHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHhC--CCEEEEEecCCCcccc-CCEEEEEeCCEEEEecChHHHHhc
Q 000452 755 RALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLN--SKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYTDVINS 831 (1495)
Q Consensus 755 RAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~--~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 831 (1495)
|||..+|+++|||||||+||+...+++.+.+.....+ |.|+|+||||++++.. ||+|++|++|++++.|+++++...
T Consensus 150 RAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~ 229 (362)
T TIGR03258 150 RAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDA 229 (362)
T ss_pred HHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999998887654433333 7899999999998765 999999999999999999999865
Q ss_pred C
Q 000452 832 G 832 (1495)
Q Consensus 832 ~ 832 (1495)
.
T Consensus 230 p 230 (362)
T TIGR03258 230 P 230 (362)
T ss_pred c
Confidence 3
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=363.39 Aligned_cols=201 Identities=29% Similarity=0.417 Sum_probs=171.8
Q ss_pred cEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe-----------EEE
Q 000452 617 AIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-----------KAY 685 (1495)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~-----------~ay 685 (1495)
.++++|++++|+ ++++|+|+||++++|++++|+|||||||||||++|+|+++|++|+|.++|. ++|
T Consensus 3 ~l~i~~l~~~~~---~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~ 79 (369)
T PRK11000 3 SVTLRNVTKAYG---DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGM 79 (369)
T ss_pred EEEEEEEEEEeC---CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEE
Confidence 488999999995 256999999999999999999999999999999999999999999999873 699
Q ss_pred EccCCcccC-ccHHHHHhcCCC---CC----HHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHHHHHh
Q 000452 686 VAQSPWIQS-GKIEDNILFGKE---MD----RERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARAL 757 (1495)
Q Consensus 686 v~Q~~~l~~-~ti~enI~fg~~---~~----~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl 757 (1495)
++|++.++. .|++|||.|+.. .+ +++.+++++.++|.+.. .....+|||||||||+|||||
T Consensus 80 v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~-----------~~~~~~LSgGq~QRvaLAraL 148 (369)
T PRK11000 80 VFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLL-----------DRKPKALSGGQRQRVAIGRTL 148 (369)
T ss_pred EeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhh-----------cCChhhCCHHHHHHHHHHHHH
Confidence 999998875 599999998743 22 23455666666665433 356789999999999999999
Q ss_pred ccCCCEeEecCcCCccCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCcccc-CCEEEEEeCCEEEEecChHHHHhc
Q 000452 758 YQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLN-SKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYTDVINS 831 (1495)
Q Consensus 758 ~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 831 (1495)
+.+|+++||||||++||+...+.+.+.+.....+ ++|+|+|||+++++.. ||+|++|++|++.+.|+++++...
T Consensus 149 ~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~ 224 (369)
T PRK11000 149 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 224 (369)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999988887644332333 8999999999998765 999999999999999999998754
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=349.38 Aligned_cols=208 Identities=26% Similarity=0.335 Sum_probs=176.4
Q ss_pred eEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHh-ccc
Q 000452 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLR-TRL 1325 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR-~~i 1325 (1495)
.|+++||+++|+.+ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ..+ +++
T Consensus 6 ~l~~~~l~~~~~~~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~----~~~~~~i 80 (272)
T PRK15056 6 GIVVNDVTVTWRNG-HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ----ALQKNLV 80 (272)
T ss_pred eEEEEeEEEEecCC-cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH----hhccceE
Confidence 59999999999633 459999999999999999999999999999999999999999999999998752 233 469
Q ss_pred EEEcccCcC---CCCcHHHhcCCC--------C---CCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHH
Q 000452 1326 SIIPQDPVM---FEGTVRSNVDPL--------E---EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQ 1391 (1495)
Q Consensus 1326 siIpQdp~L---F~GTIR~NLdp~--------~---~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQ 1391 (1495)
+|+||+|.+ +..++++|+... . ...++++.++++..++.+... +. ..+|||||||
T Consensus 81 ~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-------~~----~~~LSgG~~q 149 (272)
T PRK15056 81 AYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRH-------RQ----IGELSGGQKK 149 (272)
T ss_pred EEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhc-------CC----cccCCHHHHH
Confidence 999999965 456899997521 0 112345778889988865543 22 2469999999
Q ss_pred HHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhh-ccCEEEEEeCcEEEEecChhHH
Q 000452 1392 LVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHF-SDCTVITIAHRITSVI-DSDMVLLLSHGLIEEYDSPRKL 1469 (1495)
Q Consensus 1392 rl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f-~~~TVI~IAHRl~ti~-~~DrIlVL~~G~ivE~gsp~~L 1469 (1495)
|++|||||+++|+||||||||++||+.+...+.+.|++.. +++|||+|+|+++.+. .||+++++ +|++++.|+++++
T Consensus 150 rv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~ 228 (272)
T PRK15056 150 RVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETT 228 (272)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhc
Confidence 9999999999999999999999999999999999998864 4789999999999875 49999777 8999999999998
Q ss_pred hh
Q 000452 1470 LE 1471 (1495)
Q Consensus 1470 l~ 1471 (1495)
.+
T Consensus 229 ~~ 230 (272)
T PRK15056 229 FT 230 (272)
T ss_pred cC
Confidence 64
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=338.87 Aligned_cols=191 Identities=35% Similarity=0.466 Sum_probs=161.0
Q ss_pred EEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe-----------EEEE
Q 000452 618 IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-----------KAYV 686 (1495)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~-----------~ayv 686 (1495)
++++|++++|+ ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|+
T Consensus 1 l~~~~l~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v 77 (213)
T cd03259 1 LELKGLSKTYG---SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMV 77 (213)
T ss_pred CeeeeeEEEeC---CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEE
Confidence 46889999995 257999999999999999999999999999999999999999999999873 6899
Q ss_pred ccCCcccC-ccHHHHHhcCCC---CC----HHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHHHHHhc
Q 000452 687 AQSPWIQS-GKIEDNILFGKE---MD----RERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALY 758 (1495)
Q Consensus 687 ~Q~~~l~~-~ti~enI~fg~~---~~----~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~ 758 (1495)
+|++.++. .|++||+.++.. .+ +++.++.++.+++.+.+ .+...+||||||||++|||||.
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrl~la~al~ 146 (213)
T cd03259 78 FQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLL-----------NRYPHELSGGQQQRVALARALA 146 (213)
T ss_pred cCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhh-----------hcChhhCCHHHHHHHHHHHHHh
Confidence 99988774 699999987532 12 22345556666654433 3566899999999999999999
Q ss_pred cCCCEeEecCcCCccCHHHHHHHHHHHHHHH-h-CCCEEEEEecCCCcccc-CCEEEEEeCCEEEEec
Q 000452 759 QDADIYLFDDPFSAVDAHTGSHLFKEVLLGL-L-NSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAG 823 (1495)
Q Consensus 759 ~~~~illLDep~saLD~~~~~~i~~~~~~~~-~-~~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~~~g 823 (1495)
.+|+++||||||++||+.+.+.+++. +... . .++|+|++||+++++.. ||++++|++|++++.|
T Consensus 147 ~~p~~lllDEPt~~LD~~~~~~l~~~-l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 147 REPSLLLLDEPLSALDAKLREELREE-LKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999998888754 4443 3 38999999999998765 9999999999998754
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=353.06 Aligned_cols=203 Identities=23% Similarity=0.395 Sum_probs=169.7
Q ss_pred EEEEeeEEEecCCC--CCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcC--------------
Q 000452 618 IEIADGNFSWDISS--HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG-------------- 681 (1495)
Q Consensus 618 i~~~~~~~~~~~~~--~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g-------------- 681 (1495)
|+++|++++|+... ..++|+|+||+|++||+++|+|+||||||||+++|+|.++|++|+|.++|
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence 78999999996321 13699999999999999999999999999999999999999999998864
Q ss_pred -----------------------eEEEEccCC--cccCccHHHHHhcCCC---CCH----HHHHHHHHHhCcHHHHhhcC
Q 000452 682 -----------------------TKAYVAQSP--WIQSGKIEDNILFGKE---MDR----ERYNAVLDACSLEKDLEILS 729 (1495)
Q Consensus 682 -----------------------~~ayv~Q~~--~l~~~ti~enI~fg~~---~~~----~~~~~vl~~~~l~~dl~~l~ 729 (1495)
.++||+|+| .++..|++|||.|+.. .++ ++..++++.++|..+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~---- 158 (305)
T PRK13651 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESY---- 158 (305)
T ss_pred cccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhh----
Confidence 158999986 5677899999998742 222 3445566666664222
Q ss_pred CCCcccccCCCCccchHHHHHHHHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHH-hCCCEEEEEecCCCccc-c
Q 000452 730 FGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL-LNSKTVLYVTHQVEFLP-A 807 (1495)
Q Consensus 730 ~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~~~~tvIlvTH~~~~l~-~ 807 (1495)
.++...+||||||||++|||||+.+|+++||||||++||+...+.+.+. +..+ .+|+|||+|||+++++. .
T Consensus 159 ------~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~-l~~l~~~g~tiiivtHd~~~~~~~ 231 (305)
T PRK13651 159 ------LQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEI-FDNLNKQGKTIILVTHDLDNVLEW 231 (305)
T ss_pred ------hhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHHCCCEEEEEeeCHHHHHHh
Confidence 2467789999999999999999999999999999999999998888754 4443 35899999999999875 5
Q ss_pred CCEEEEEeCCEEEEecChHHHHhc
Q 000452 808 ADLVLVIKDGKITQAGKYTDVINS 831 (1495)
Q Consensus 808 ~d~i~~l~~G~i~~~g~~~~l~~~ 831 (1495)
||+|++|++|++++.|+++++...
T Consensus 232 adrv~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 232 TKRTIFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred CCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999987643
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=334.71 Aligned_cols=190 Identities=23% Similarity=0.278 Sum_probs=162.2
Q ss_pred eEEEeeeeEEeCCC--CCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccc---CCccEEEEcCEeCCCCCHHHH
Q 000452 1247 KIDLRDLQVRYAPH--MPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVE---PAAGQILIDGIDISLIGLHDL 1321 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~--~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~e---p~~G~I~IDG~dI~~i~l~~L 1321 (1495)
.+.++||+|.|+.. ..++|+|+||+|++||++||+|++|||||||+++|.|+++ |++|+|.+||.++.... ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKY 81 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhh
Confidence 46899999999753 4579999999999999999999999999999999999999 89999999999998765 457
Q ss_pred hcccEEEcccCcCCCC-cHHHhcCCCCCCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHc
Q 000452 1322 RTRLSIIPQDPVMFEG-TVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLL 1400 (1495)
Q Consensus 1322 R~~isiIpQdp~LF~G-TIR~NLdp~~~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALL 1400 (1495)
|++++|+||++.+|.+ |+++||...... . .+ +....||+|||||++|||||+
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~---------~--------------~~----~~~~~LS~Ge~qrl~laral~ 134 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALRC---------K--------------GN----EFVRGISGGERKRVSIAEALV 134 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhhh---------c--------------cc----cchhhCCHHHHHHHHHHHHHh
Confidence 8899999999988875 999999642110 0 12 233579999999999999999
Q ss_pred cCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEe-cCchhh-hccCEEEEEeCcEEEEec
Q 000452 1401 KRRKILMLDEATASVDTATDNLIQQSLRQHFS--DCTVITIA-HRITSV-IDSDMVLLLSHGLIEEYD 1464 (1495)
Q Consensus 1401 r~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~--~~TVI~IA-HRl~ti-~~~DrIlVL~~G~ivE~g 1464 (1495)
++|+||+|||||+++|+++.+.+.+.|++..+ ++|+|+++ |+.+.+ ..||+|++|++|++++.|
T Consensus 135 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 135 SRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred hCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 99999999999999999999999999998754 46766655 555665 469999999999999865
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=339.05 Aligned_cols=200 Identities=24% Similarity=0.350 Sum_probs=170.7
Q ss_pred EEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCC----CHHHHhc
Q 000452 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLI----GLHDLRT 1323 (1495)
Q Consensus 1248 I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i----~l~~LR~ 1323 (1495)
+++ ||+++|+.. .+ |+||+|++ |++||+|++|||||||+++|.|+++|++|+|.+||.++... +...+|+
T Consensus 2 ~~~-~l~~~~~~~--~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 75 (214)
T cd03297 2 LCV-DIEKRLPDF--TL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQR 75 (214)
T ss_pred cee-eeeEecCCe--ee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhh
Confidence 345 899999753 24 99999999 99999999999999999999999999999999999998643 3346788
Q ss_pred ccEEEcccCcCCCC-cHHHhcCCC-CCC----CHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHH
Q 000452 1324 RLSIIPQDPVMFEG-TVRSNVDPL-EEY----TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGR 1397 (1495)
Q Consensus 1324 ~isiIpQdp~LF~G-TIR~NLdp~-~~~----sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LAR 1397 (1495)
+++|+||++.+|.+ |+++|+... ..+ .++++.+++++.++.+... ....+||+|||||++|||
T Consensus 76 ~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~ 144 (214)
T cd03297 76 KIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLN-----------RYPAQLSGGEKQRVALAR 144 (214)
T ss_pred cEEEEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhh-----------cCcccCCHHHHHHHHHHH
Confidence 99999999999865 999999632 211 2345777888887754433 334679999999999999
Q ss_pred HHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecCchhhhc-cCEEEEEeCcEEEEec
Q 000452 1398 VLLKRRKILMLDEATASVDTATDNLIQQSLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGLIEEYD 1464 (1495)
Q Consensus 1398 ALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~g 1464 (1495)
|++++|+||||||||++||+++.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 145 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 145 ALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999999998643 7899999999999864 9999999999999875
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=340.17 Aligned_cols=197 Identities=22% Similarity=0.341 Sum_probs=165.5
Q ss_pred EEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcC------------eEEE
Q 000452 618 IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG------------TKAY 685 (1495)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g------------~~ay 685 (1495)
++++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|
T Consensus 1 i~~~~~~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 77 (220)
T cd03265 1 IEVENLVKKYG---DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGI 77 (220)
T ss_pred CEEEEEEEEEC---CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEE
Confidence 46899999995 25799999999999999999999999999999999999999999999987 3689
Q ss_pred EccCCcccC-ccHHHHHhcCCC---CC----HHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHHHHHh
Q 000452 686 VAQSPWIQS-GKIEDNILFGKE---MD----RERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARAL 757 (1495)
Q Consensus 686 v~Q~~~l~~-~ti~enI~fg~~---~~----~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl 757 (1495)
++|++.++. .|++||+.++.. .+ +++.++.++.+++.+.. .....+||||||||++||||+
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qr~~la~al 146 (220)
T cd03265 78 VFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAA-----------DRLVKTYSGGMRRRLEIARSL 146 (220)
T ss_pred ecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHh-----------hCChhhCCHHHHHHHHHHHHH
Confidence 999998775 599999987421 21 23455666666665433 345679999999999999999
Q ss_pred ccCCCEeEecCcCCccCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCcccc-CCEEEEEeCCEEEEecChHHH
Q 000452 758 YQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLN-SKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYTDV 828 (1495)
Q Consensus 758 ~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 828 (1495)
+.+|+++||||||++||+++.+.+.+.+.....+ ++|+|++||+++++.. ||++++|++|++++.|+++++
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 147 VHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 9999999999999999999988887544333334 7899999999999875 999999999999998887653
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-36 Score=336.90 Aligned_cols=198 Identities=48% Similarity=0.881 Sum_probs=177.7
Q ss_pred EEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcC-----------------
Q 000452 619 EIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG----------------- 681 (1495)
Q Consensus 619 ~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g----------------- 681 (1495)
.+.|++|.|+. ..++++|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 ~~~~~~~~~~~--~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 2 QVTNGYFSWGS--GLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred eeeeeEEecCC--CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 56789999963 25799999999999999999999999999999999999999999999865
Q ss_pred eEEEEccCCcccCccHHHHHhcCCCCCHHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHHHHHhccCC
Q 000452 682 TKAYVAQSPWIQSGKIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDA 761 (1495)
Q Consensus 682 ~~ayv~Q~~~l~~~ti~enI~fg~~~~~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~ 761 (1495)
.++|++|+|.+++.|++||+.++.+.+.++.+++++.+++.+.++.+|.|+++.+++...+||||||||++||||++.+|
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p 159 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNT 159 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCC
Confidence 26899999999999999999987766666778889999999889989999999999999999999999999999999999
Q ss_pred CEeEecCcCCccCHHHHHHHHHH-HHHHHh-CCCEEEEEecCCCccccCCEEEEEeCCE
Q 000452 762 DIYLFDDPFSAVDAHTGSHLFKE-VLLGLL-NSKTVLYVTHQVEFLPAADLVLVIKDGK 818 (1495)
Q Consensus 762 ~illLDep~saLD~~~~~~i~~~-~~~~~~-~~~tvIlvTH~~~~l~~~d~i~~l~~G~ 818 (1495)
+++||||||++||+.+.+.+.+. ++.... .++|+|++||+.+.+..||++++|++|.
T Consensus 160 ~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 160 NIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred CEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 99999999999999998888763 444443 3789999999999988899999999873
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=330.53 Aligned_cols=172 Identities=27% Similarity=0.467 Sum_probs=156.9
Q ss_pred eEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCH-HHHhccc
Q 000452 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGL-HDLRTRL 1325 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l-~~LR~~i 1325 (1495)
.|+++|++++| +|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++.+.+. ...|+++
T Consensus 4 ~l~~~~l~~~~------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (182)
T cd03215 4 VLEVRGLSVKG------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGI 77 (182)
T ss_pred EEEEeccEEEe------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCe
Confidence 48999999999 8999999999999999999999999999999999999999999999999998874 4568899
Q ss_pred EEEcccC----cCCCCcHHHhcCCCCCCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHcc
Q 000452 1326 SIIPQDP----VMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLK 1401 (1495)
Q Consensus 1326 siIpQdp----~LF~GTIR~NLdp~~~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALLr 1401 (1495)
+|+||+| .++..|+++|+..... ||+|||||++||||+++
T Consensus 78 ~~~~q~~~~~~~~~~~t~~e~l~~~~~------------------------------------LS~G~~qrl~la~al~~ 121 (182)
T cd03215 78 AYVPEDRKREGLVLDLSVAENIALSSL------------------------------------LSGGNQQKVVLARWLAR 121 (182)
T ss_pred EEecCCcccCcccCCCcHHHHHHHHhh------------------------------------cCHHHHHHHHHHHHHcc
Confidence 9999995 3445799999864211 89999999999999999
Q ss_pred CCCeEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-cCEEEEEeCcEE
Q 000452 1402 RRKILMLDEATASVDTATDNLIQQSLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGLI 1460 (1495)
Q Consensus 1402 ~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~i 1460 (1495)
+|++|+|||||++||+++...+.+.|++.. +++|+|+++|+++.+.+ ||+|++|++|++
T Consensus 122 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 122 DPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred CCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 999999999999999999999999999864 47999999999999877 999999999975
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=339.69 Aligned_cols=189 Identities=27% Similarity=0.451 Sum_probs=159.5
Q ss_pred EEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe---------------
Q 000452 618 IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT--------------- 682 (1495)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~--------------- 682 (1495)
++++|++++|+.. .+++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 2 l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 6899999999522 246999999999999999999999999999999999999999999999873
Q ss_pred -EEEEccCCcccC-ccHHHHHhcCCC---CC----HHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHH
Q 000452 683 -KAYVAQSPWIQS-GKIEDNILFGKE---MD----RERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQI 753 (1495)
Q Consensus 683 -~ayv~Q~~~l~~-~ti~enI~fg~~---~~----~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 753 (1495)
++|++|++.++. .|++||+.++.. .+ +++..++++.+++.+.. .+...+||||||||++|
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~l 149 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKA-----------HALPMQLSGGEQQRVAI 149 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhh-----------hCChhhCCHHHHHHHHH
Confidence 589999998875 699999987521 11 23455666666665433 34567999999999999
Q ss_pred HHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHH-hCCCEEEEEecCCCcccc-CCEEEEEeCCEE
Q 000452 754 ARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL-LNSKTVLYVTHQVEFLPA-ADLVLVIKDGKI 819 (1495)
Q Consensus 754 ARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~~~~tvIlvTH~~~~l~~-~d~i~~l~~G~i 819 (1495)
|||++++|+++||||||++||+.+.+.+.+. +... .+++|+|++||+++++.. ||++++|++|++
T Consensus 150 aral~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 150 ARAIVHKPPLLLADEPTGNLDPELSRDIMRL-FEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHhcCCCEEEEeCCCCcCCHHHHHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 9999999999999999999999998888764 4443 358999999999999875 999999999975
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=351.62 Aligned_cols=204 Identities=25% Similarity=0.454 Sum_probs=169.5
Q ss_pred cEEEEeeEEEecCCC--CCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe------------
Q 000452 617 AIEIADGNFSWDISS--HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------ 682 (1495)
Q Consensus 617 ~i~~~~~~~~~~~~~--~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~------------ 682 (1495)
.++++|++++|+... .+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999996321 246999999999999999999999999999999999999999999999872
Q ss_pred -----EEEEccCC--cccCccHHHHHhcCCC---CCHH----HHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHH
Q 000452 683 -----KAYVAQSP--WIQSGKIEDNILFGKE---MDRE----RYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQK 748 (1495)
Q Consensus 683 -----~ayv~Q~~--~l~~~ti~enI~fg~~---~~~~----~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 748 (1495)
++||+|+| .++..|++|||.|+.. ++.+ +..+.++.++|..+. .++.+.+||||||
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~----------~~~~~~~LSgGq~ 151 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDV----------MSQSPFQMSGGQM 151 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhh----------hhCCcccCCHHHH
Confidence 58999997 5777899999998632 2332 333445555543211 2467889999999
Q ss_pred HHHHHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHh--CCCEEEEEecCCCccc-cCCEEEEEeCCEEEEecCh
Q 000452 749 QRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL--NSKTVLYVTHQVEFLP-AADLVLVIKDGKITQAGKY 825 (1495)
Q Consensus 749 qRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~--~~~tvIlvTH~~~~l~-~~d~i~~l~~G~i~~~g~~ 825 (1495)
||++|||||+.+|+++||||||++||+.+...+.+ ++..+. .|+|+|++||+++++. .||+|++|++|++++.|++
T Consensus 152 qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~-~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~ 230 (286)
T PRK13646 152 RKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMR-LLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSP 230 (286)
T ss_pred HHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHH-HHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999999999888875 454442 4899999999999875 5999999999999999999
Q ss_pred HHHHhc
Q 000452 826 TDVINS 831 (1495)
Q Consensus 826 ~~l~~~ 831 (1495)
+++.+.
T Consensus 231 ~~~~~~ 236 (286)
T PRK13646 231 KELFKD 236 (286)
T ss_pred HHHHhC
Confidence 887653
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=353.60 Aligned_cols=201 Identities=25% Similarity=0.416 Sum_probs=170.0
Q ss_pred ccEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe------------E
Q 000452 616 TAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------K 683 (1495)
Q Consensus 616 ~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~------------~ 683 (1495)
..++++|++++|+ +..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. +
T Consensus 6 ~~i~i~~l~k~~~---~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~i 82 (306)
T PRK13537 6 APIDFRNVEKRYG---DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRV 82 (306)
T ss_pred ceEEEEeEEEEEC---CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcE
Confidence 4699999999995 357999999999999999999999999999999999999999999999873 6
Q ss_pred EEEccCCcccC-ccHHHHHhcCCC---CCH----HHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHHHH
Q 000452 684 AYVAQSPWIQS-GKIEDNILFGKE---MDR----ERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIAR 755 (1495)
Q Consensus 684 ayv~Q~~~l~~-~ti~enI~fg~~---~~~----~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LAR 755 (1495)
|||||++.++. .|++||+.|... .+. ++.+++++.+++.+.. ..+..+||||||||++|||
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~la~ 151 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKA-----------DAKVGELSGGMKRRLTLAR 151 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHh-----------cCchhhCCHHHHHHHHHHH
Confidence 99999998874 699999975321 122 2334555555554322 3556799999999999999
Q ss_pred HhccCCCEeEecCcCCccCHHHHHHHHHHHHHHH-hCCCEEEEEecCCCcccc-CCEEEEEeCCEEEEecChHHHHhc
Q 000452 756 ALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL-LNSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYTDVINS 831 (1495)
Q Consensus 756 Al~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~~~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 831 (1495)
||+++|++++|||||++||+...+.+++. +..+ .+|+|+|++||+++.++. ||+|++|++|++++.|+++++.+.
T Consensus 152 aL~~~P~lllLDEPt~gLD~~~~~~l~~~-l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 152 ALVNDPDVLVLDEPTTGLDPQARHLMWER-LRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred HHhCCCCEEEEeCCCcCCCHHHHHHHHHH-HHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 99999999999999999999999888764 5444 358999999999999876 999999999999999999998654
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=341.88 Aligned_cols=195 Identities=31% Similarity=0.459 Sum_probs=164.1
Q ss_pred EEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCC-----CCCCcEEEEcCe----------
Q 000452 618 IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEV-----PKISGTLKLCGT---------- 682 (1495)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~-----~~~~G~v~~~g~---------- 682 (1495)
++++|++++|+ ++++|+|+||++++||+++|+|+||||||||+++|+|++ +|++|+|.++|.
T Consensus 1 i~~~~l~~~~~---~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 1 IELRDLNVYYG---DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred CEEEEEEEEcC---CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence 46899999995 247999999999999999999999999999999999999 999999999872
Q ss_pred -----EEEEccCCcccCccHHHHHhcCCCC----C----HHHHHHHHHHhCcHHHHhhcCCCCcccccCC--CCccchHH
Q 000452 683 -----KAYVAQSPWIQSGKIEDNILFGKEM----D----RERYNAVLDACSLEKDLEILSFGDQTVVGER--GINLSGGQ 747 (1495)
Q Consensus 683 -----~ayv~Q~~~l~~~ti~enI~fg~~~----~----~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~--g~~LSGGQ 747 (1495)
++|++|++.+++.|++||+.++... . +++..++++.+++.+.+. ++ +.+|||||
T Consensus 78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~~~LSgG~ 146 (227)
T cd03260 78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVK-----------DRLHALGLSGGQ 146 (227)
T ss_pred HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHh-----------ccCCcccCCHHH
Confidence 5899999988888999999875321 1 234455566666644332 23 57999999
Q ss_pred HHHHHHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEecCCCcccc-CCEEEEEeCCEEEEecChH
Q 000452 748 KQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYT 826 (1495)
Q Consensus 748 kqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 826 (1495)
|||++||||++.+|+++||||||++||+.+.+.+++ ++....+.+|+|++||+++++.. ||++++|++|++++.|+++
T Consensus 147 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 225 (227)
T cd03260 147 QQRLCLARALANEPEVLLLDEPTSALDPISTAKIEE-LIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTE 225 (227)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcc
Confidence 999999999999999999999999999999888875 45444334899999999998765 9999999999999988765
Q ss_pred H
Q 000452 827 D 827 (1495)
Q Consensus 827 ~ 827 (1495)
+
T Consensus 226 ~ 226 (227)
T cd03260 226 Q 226 (227)
T ss_pred c
Confidence 4
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=332.72 Aligned_cols=182 Identities=27% Similarity=0.394 Sum_probs=161.7
Q ss_pred eEEEeeeeEEeCCC----CCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccc--cCCccEEEEcCEeCCCCCHHH
Q 000452 1247 KIDLRDLQVRYAPH----MPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIV--EPAAGQILIDGIDISLIGLHD 1320 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~----~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~--ep~~G~I~IDG~dI~~i~l~~ 1320 (1495)
.|+++||+++|+.. ..++|+|+||+|++||++||+|++|||||||+++|.|++ +|++|+|.+||.++.. .+
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hh
Confidence 58999999999752 246999999999999999999999999999999999999 9999999999999875 36
Q ss_pred HhcccEEEcccCcCCCC-cHHHhcCCCCCCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHH
Q 000452 1321 LRTRLSIIPQDPVMFEG-TVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVL 1399 (1495)
Q Consensus 1321 LR~~isiIpQdp~LF~G-TIR~NLdp~~~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAL 1399 (1495)
+|++++|+||+|.+|.+ |+++|+.... ... .||+|||||++|||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~------------~~~---------------------~LS~G~~qrv~laral 126 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFAA------------KLR---------------------GLSGGERKRVSIALEL 126 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHHH------------Hhc---------------------cCCHHHHHHHHHHHHH
Confidence 78899999999998875 9999985210 000 6999999999999999
Q ss_pred ccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCch-hhh-ccCEEEEEeCcEEEEec
Q 000452 1400 LKRRKILMLDEATASVDTATDNLIQQSLRQHF-SDCTVITIAHRIT-SVI-DSDMVLLLSHGLIEEYD 1464 (1495)
Q Consensus 1400 Lr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f-~~~TVI~IAHRl~-ti~-~~DrIlVL~~G~ivE~g 1464 (1495)
+++|++++|||||++||..+.+.+.+.|++.. +++|+|+|+|+++ .+. .||+|++|++|++++.|
T Consensus 127 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 127 VSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999865 4789999999997 454 49999999999998764
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=337.64 Aligned_cols=193 Identities=26% Similarity=0.361 Sum_probs=166.0
Q ss_pred EeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCH----HHHhccc
Q 000452 1250 LRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGL----HDLRTRL 1325 (1495)
Q Consensus 1250 f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l----~~LR~~i 1325 (1495)
++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..+.. ...|+++
T Consensus 1 i~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 78 (206)
T TIGR03608 1 LKNISKKFGD--KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKL 78 (206)
T ss_pred CcceEEEECC--EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCe
Confidence 4789999964 359999999999999999999999999999999999999999999999999875542 3467899
Q ss_pred EEEcccCcCCC-CcHHHhcCCC---C----CCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHH
Q 000452 1326 SIIPQDPVMFE-GTVRSNVDPL---E----EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGR 1397 (1495)
Q Consensus 1326 siIpQdp~LF~-GTIR~NLdp~---~----~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LAR 1397 (1495)
+|+||+|.+|. .|+++|+... . ...++++.++++..++.+...+ ...+||+|||||++|||
T Consensus 79 ~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~lS~G~~qr~~lar 147 (206)
T TIGR03608 79 GYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQ-----------KIYELSGGEQQRVALAR 147 (206)
T ss_pred eEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcC-----------ChhhCCHHHHHHHHHHH
Confidence 99999999997 6999999631 1 1124567788888887554332 23579999999999999
Q ss_pred HHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhccCEEEEE
Q 000452 1398 VLLKRRKILMLDEATASVDTATDNLIQQSLRQHF-SDCTVITIAHRITSVIDSDMVLLL 1455 (1495)
Q Consensus 1398 ALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f-~~~TVI~IAHRl~ti~~~DrIlVL 1455 (1495)
||+++|++|||||||++||+++...+.+.|++.. .++|+|+++|+++.+..||+|++|
T Consensus 148 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 148 AILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred HHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 9999999999999999999999999999999865 378999999999988889999986
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-36 Score=344.14 Aligned_cols=212 Identities=21% Similarity=0.283 Sum_probs=179.0
Q ss_pred eEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcc--ccCCccEEEEcCEeCCCCCHHHHhc-
Q 000452 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRI--VEPAAGQILIDGIDISLIGLHDLRT- 1323 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl--~ep~~G~I~IDG~dI~~i~l~~LR~- 1323 (1495)
.++++|++++|+. .++|+|+||+|++||++||+|++|||||||+++|.|+ ++|++|+|.+||.++..++.+..++
T Consensus 7 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (252)
T CHL00131 7 ILEIKNLHASVNE--NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHL 84 (252)
T ss_pred eEEEEeEEEEeCC--EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhee
Confidence 4999999999964 3599999999999999999999999999999999998 6899999999999999888766554
Q ss_pred ccEEEcccCcCCCC-cHHHhcCCC-C---------CCC----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCch
Q 000452 1324 RLSIIPQDPVMFEG-TVRSNVDPL-E---------EYT----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMG 1388 (1495)
Q Consensus 1324 ~isiIpQdp~LF~G-TIR~NLdp~-~---------~~s----d~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~G 1388 (1495)
.++++||+|.+|.+ |+++|+... . +.+ .+++.++|+.+++.+.. ++..+. ..||||
T Consensus 85 ~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~~---~~LSgG 155 (252)
T CHL00131 85 GIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSF------LSRNVN---EGFSGG 155 (252)
T ss_pred eEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhh------hccccc---cCCCHH
Confidence 58999999999987 889997421 1 011 13456778887775211 222221 249999
Q ss_pred HHHHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc--cCEEEEEeCcEEEEecC
Q 000452 1389 QRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHF-SDCTVITIAHRITSVID--SDMVLLLSHGLIEEYDS 1465 (1495)
Q Consensus 1389 QrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f-~~~TVI~IAHRl~ti~~--~DrIlVL~~G~ivE~gs 1465 (1495)
||||++|||||+++|+||||||||++||.++...+.+.|++.. +++|||+|+|+++.+.. ||+|++|++|++++.|+
T Consensus 156 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~~ 235 (252)
T CHL00131 156 EKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGD 235 (252)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEecC
Confidence 9999999999999999999999999999999999999998865 47999999999999875 89999999999999999
Q ss_pred hhHH
Q 000452 1466 PRKL 1469 (1495)
Q Consensus 1466 p~~L 1469 (1495)
|+.+
T Consensus 236 ~~~~ 239 (252)
T CHL00131 236 AELA 239 (252)
T ss_pred hhhh
Confidence 9844
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=338.87 Aligned_cols=196 Identities=36% Similarity=0.486 Sum_probs=163.8
Q ss_pred EEEEeeEEEecCCC-CCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcC--------eEEEEcc
Q 000452 618 IEIADGNFSWDISS-HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG--------TKAYVAQ 688 (1495)
Q Consensus 618 i~~~~~~~~~~~~~-~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g--------~~ayv~Q 688 (1495)
++++|++++|+... .+++|+|+||++++|++++|+||||||||||+++|+|..+|++|+|.++| .++|++|
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q 80 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQ 80 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEec
Confidence 46899999996311 14799999999999999999999999999999999999999999999987 3699999
Q ss_pred CCcccC-ccHHHHHhcCCC---CC----HHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHHHHHhccC
Q 000452 689 SPWIQS-GKIEDNILFGKE---MD----RERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQD 760 (1495)
Q Consensus 689 ~~~l~~-~ti~enI~fg~~---~~----~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~ 760 (1495)
++.++. .|++||+.++.. .+ .++.++.++.+++.+.+ .....+||||||||++||||++.+
T Consensus 81 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrl~la~al~~~ 149 (220)
T cd03293 81 QDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFE-----------NAYPHQLSGGMRQRVALARALAVD 149 (220)
T ss_pred ccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhh-----------hCCcccCCHHHHHHHHHHHHHHcC
Confidence 998876 699999987532 11 23445566666665433 355679999999999999999999
Q ss_pred CCEeEecCcCCccCHHHHHHHHHHHHHHH-h-CCCEEEEEecCCCcccc-CCEEEEEe--CCEEEEecCh
Q 000452 761 ADIYLFDDPFSAVDAHTGSHLFKEVLLGL-L-NSKTVLYVTHQVEFLPA-ADLVLVIK--DGKITQAGKY 825 (1495)
Q Consensus 761 ~~illLDep~saLD~~~~~~i~~~~~~~~-~-~~~tvIlvTH~~~~l~~-~d~i~~l~--~G~i~~~g~~ 825 (1495)
|+++||||||++||+.+.+.+++. +... . .++|+|++||+++++.. ||++++|+ +|++++.++.
T Consensus 150 p~lllLDEPt~~LD~~~~~~~~~~-l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 150 PDVLLLDEPFSALDALTREQLQEE-LLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred CCEEEECCCCCCCCHHHHHHHHHH-HHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 999999999999999999888764 4443 3 37999999999998764 99999999 7999987764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-36 Score=340.38 Aligned_cols=201 Identities=28% Similarity=0.427 Sum_probs=171.7
Q ss_pred cEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe-------------E
Q 000452 617 AIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------K 683 (1495)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~-------------~ 683 (1495)
.++++|++++|+ ++++|+|+||++++|++++|+||||||||||+++|+|+.+|++|+|.++|. +
T Consensus 3 ~l~~~~l~~~~~---~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 3 EIEFKEVSYSSF---GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred eEEEEeEEEEeC---CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 488999999995 357999999999999999999999999999999999999999999999873 6
Q ss_pred EEEccCCcccCccHHHHHhcCCCC---CHHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHHHHHhccC
Q 000452 684 AYVAQSPWIQSGKIEDNILFGKEM---DRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQD 760 (1495)
Q Consensus 684 ayv~Q~~~l~~~ti~enI~fg~~~---~~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~ 760 (1495)
+|++|++.++..|++||+.++... ..++..+.++.+++..+. ..+.+.+||||||||++||||++.+
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LS~G~~qrl~la~al~~~ 149 (241)
T PRK14250 80 GMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEY----------ATRDVKNLSGGEAQRVSIARTLANN 149 (241)
T ss_pred EEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHH----------hhCCcccCCHHHHHHHHHHHHHhcC
Confidence 899999999889999999876432 234556666766664322 2356789999999999999999999
Q ss_pred CCEeEecCcCCccCHHHHHHHHHHHHHHH-h-CCCEEEEEecCCCcccc-CCEEEEEeCCEEEEecChHHHHhc
Q 000452 761 ADIYLFDDPFSAVDAHTGSHLFKEVLLGL-L-NSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYTDVINS 831 (1495)
Q Consensus 761 ~~illLDep~saLD~~~~~~i~~~~~~~~-~-~~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 831 (1495)
|+++||||||++||+.+.+.+.+ ++... . .|+|+|++||+++++.. ||+|++|++|++++.|+.+++...
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (241)
T PRK14250 150 PEVLLLDEPTSALDPTSTEIIEE-LIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTN 222 (241)
T ss_pred CCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcC
Confidence 99999999999999999888765 44443 3 38999999999999875 999999999999999999888653
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-36 Score=342.21 Aligned_cols=197 Identities=33% Similarity=0.467 Sum_probs=166.0
Q ss_pred EEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe---------------
Q 000452 618 IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT--------------- 682 (1495)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~--------------- 682 (1495)
++++|++++|+. ++++|+|+||++++|++++|+||||||||||+++|+|..+|++|+|.++|.
T Consensus 2 l~~~~l~~~~~~--~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred eEEEeeeeecCC--CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 678999999951 357999999999999999999999999999999999999999999999872
Q ss_pred -EEEEccCCcccC-ccHHHHHhcCCCC---------------CHHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccch
Q 000452 683 -KAYVAQSPWIQS-GKIEDNILFGKEM---------------DRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSG 745 (1495)
Q Consensus 683 -~ayv~Q~~~l~~-~ti~enI~fg~~~---------------~~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSG 745 (1495)
++|++|++.++. .|++||+.++... ++++..++++.+++.+.+ ...+.+|||
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSg 148 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKA-----------YQRADQLSG 148 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhh-----------cCCcccCCH
Confidence 589999998775 6999999875310 122344555555554332 466789999
Q ss_pred HHHHHHHHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHH-h-CCCEEEEEecCCCcccc-CCEEEEEeCCEEEEe
Q 000452 746 GQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL-L-NSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQA 822 (1495)
Q Consensus 746 GQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~-~~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~~~ 822 (1495)
|||||++||||++.+|+++||||||++||+.+.+.+.+ ++... . .++|+|++||+++++.. ||++++|++|++++.
T Consensus 149 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~ 227 (243)
T TIGR02315 149 GQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMD-YLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFD 227 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEec
Confidence 99999999999999999999999999999999888865 44444 3 37899999999999864 999999999999999
Q ss_pred cChHHH
Q 000452 823 GKYTDV 828 (1495)
Q Consensus 823 g~~~~l 828 (1495)
|+++++
T Consensus 228 ~~~~~~ 233 (243)
T TIGR02315 228 GAPSEL 233 (243)
T ss_pred CCHHHh
Confidence 998875
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-36 Score=322.48 Aligned_cols=164 Identities=28% Similarity=0.367 Sum_probs=151.2
Q ss_pred EEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccEE
Q 000452 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSI 1327 (1495)
Q Consensus 1248 I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~isi 1327 (1495)
|+++|++++|+.+ +++|+|+||+|++||++||+|++|||||||+++|+|+++|++|+|.++|. ++++|
T Consensus 1 i~~~~~~~~~~~~-~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~~ 68 (166)
T cd03223 1 IELENLSLATPDG-RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLLF 68 (166)
T ss_pred CEEEEEEEEcCCC-CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEEE
Confidence 5789999999644 45999999999999999999999999999999999999999999999983 68999
Q ss_pred EcccCcCCCCcHHHhcCCCCCCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCeEE
Q 000452 1328 IPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILM 1407 (1495)
Q Consensus 1328 IpQdp~LF~GTIR~NLdp~~~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALLr~~~ILi 1407 (1495)
+||+|.++++|+++|+... ....||+|||||++||||++++|++++
T Consensus 69 ~~q~~~~~~~tv~~nl~~~----------------------------------~~~~LS~G~~~rv~laral~~~p~~ll 114 (166)
T cd03223 69 LPQRPYLPLGTLREQLIYP----------------------------------WDDVLSGGEQQRLAFARLLLHKPKFVF 114 (166)
T ss_pred ECCCCccccccHHHHhhcc----------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9999999999999999642 235799999999999999999999999
Q ss_pred EEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhccCEEEEEeCcE
Q 000452 1408 LDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGL 1459 (1495)
Q Consensus 1408 LDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~ 1459 (1495)
|||||+++|.++...+.+.|++. ++|+|++||+++....||+|++|++|-
T Consensus 115 lDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~~d~i~~l~~~~ 164 (166)
T cd03223 115 LDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKFHDRVLDLDGEG 164 (166)
T ss_pred EECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhhCCEEEEEcCCC
Confidence 99999999999999999999986 689999999999888899999998863
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-36 Score=334.39 Aligned_cols=191 Identities=26% Similarity=0.385 Sum_probs=164.6
Q ss_pred EEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe-----------EEEE
Q 000452 618 IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-----------KAYV 686 (1495)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~-----------~ayv 686 (1495)
++++|++++|+ ++++|+|+||++++|++++|+||||||||||+++|+|+.+|++|+|.++|. ++|+
T Consensus 1 l~~~~l~~~~~---~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 77 (208)
T cd03268 1 LKTNDLTKTYG---KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGAL 77 (208)
T ss_pred CEEEEEEEEEC---CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEe
Confidence 46899999995 357999999999999999999999999999999999999999999999873 6899
Q ss_pred ccCCccc-CccHHHHHhcCC---CCCHHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHHHHHhccCCC
Q 000452 687 AQSPWIQ-SGKIEDNILFGK---EMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDAD 762 (1495)
Q Consensus 687 ~Q~~~l~-~~ti~enI~fg~---~~~~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ 762 (1495)
+|++.++ +.|++||+.++. ..++++.+++++..++.+.. .+.+.+||||||||++||||++.+|+
T Consensus 78 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~la~al~~~p~ 146 (208)
T cd03268 78 IEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSA-----------KKKVKGFSLGMKQRLGIALALLGNPD 146 (208)
T ss_pred cCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHH-----------hhhHhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999876 579999997753 23455667777777776543 35678999999999999999999999
Q ss_pred EeEecCcCCccCHHHHHHHHHHHHHHH-hCCCEEEEEecCCCcccc-CCEEEEEeCCEEEEec
Q 000452 763 IYLFDDPFSAVDAHTGSHLFKEVLLGL-LNSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAG 823 (1495)
Q Consensus 763 illLDep~saLD~~~~~~i~~~~~~~~-~~~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~~~g 823 (1495)
++||||||++||+.+.+.+.+. +... .+++|+|++||+++++.. ||++++|++|++++.|
T Consensus 147 llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 147 LLILDEPTNGLDPDGIKELREL-ILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred EEEECCCcccCCHHHHHHHHHH-HHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999998888764 4443 358999999999999865 9999999999998754
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=332.29 Aligned_cols=181 Identities=24% Similarity=0.326 Sum_probs=160.6
Q ss_pred eEEEeeeeEEeCCC--CCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccc--cCCccEEEEcCEeCCCCCHHHHh
Q 000452 1247 KIDLRDLQVRYAPH--MPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIV--EPAAGQILIDGIDISLIGLHDLR 1322 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~--~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~--ep~~G~I~IDG~dI~~i~l~~LR 1322 (1495)
.|+++|++++|+++ ..++|+|+||+|++||++||+|++|||||||+++|.|++ +|++|+|.+||.++. ..+|
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhh
Confidence 58999999999752 246999999999999999999999999999999999986 489999999999986 5678
Q ss_pred cccEEEcccCcCCCC-cHHHhcCCCCCCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHcc
Q 000452 1323 TRLSIIPQDPVMFEG-TVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLK 1401 (1495)
Q Consensus 1323 ~~isiIpQdp~LF~G-TIR~NLdp~~~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALLr 1401 (1495)
++++++||+|.+|.+ |+++|+... ..++ +||+|||||++||||+++
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~---------~~~~------------------------~LSgGe~qrv~la~al~~ 125 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFS---------ALLR------------------------GLSVEQRKRLTIGVELAA 125 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHH---------HHHh------------------------cCCHHHhHHHHHHHHHhc
Confidence 899999999988876 999998621 0000 799999999999999999
Q ss_pred CCCeEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchh--hhccCEEEEEeC-cEEEEec
Q 000452 1402 RRKILMLDEATASVDTATDNLIQQSLRQHF-SDCTVITIAHRITS--VIDSDMVLLLSH-GLIEEYD 1464 (1495)
Q Consensus 1402 ~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f-~~~TVI~IAHRl~t--i~~~DrIlVL~~-G~ivE~g 1464 (1495)
+|++|+|||||+++|.++...+.+.|++.. .++|+|+|+|+++. ...||+|++|++ |++++.|
T Consensus 126 ~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 126 KPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred CCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 999999999999999999999999999864 47999999999984 466999999999 9999875
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-36 Score=348.02 Aligned_cols=198 Identities=31% Similarity=0.449 Sum_probs=169.5
Q ss_pred cEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe-------------E
Q 000452 617 AIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------K 683 (1495)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~-------------~ 683 (1495)
.++++|++++|+. .+++|+|+||++++||+++|+|+||||||||+++|.|+++|++|+|.++|. +
T Consensus 4 ~l~~~~l~~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKD--GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCC--CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 5899999999952 346999999999999999999999999999999999999999999999883 6
Q ss_pred EEEccCC--cccCccHHHHHhcCCC---CC----HHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHHH
Q 000452 684 AYVAQSP--WIQSGKIEDNILFGKE---MD----RERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIA 754 (1495)
Q Consensus 684 ayv~Q~~--~l~~~ti~enI~fg~~---~~----~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LA 754 (1495)
+|++|+| .++..|++||+.|+.. .+ +++++++++.++|.+.. .....+||||||||++||
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~LSgG~~qrv~la 150 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFR-----------DKPPYHLSYGQKKRVAIA 150 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHh-----------cCChhhCCHHHHHHHHHH
Confidence 9999998 5778899999998642 22 23456667777775433 345679999999999999
Q ss_pred HHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHH-hCCCEEEEEecCCCccc-cCCEEEEEeCCEEEEecChHHH
Q 000452 755 RALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL-LNSKTVLYVTHQVEFLP-AADLVLVIKDGKITQAGKYTDV 828 (1495)
Q Consensus 755 RAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~~~~tvIlvTH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l 828 (1495)
|||+.+|+++||||||++||+.+...+.+. +... .+|+|+|++||+++++. .||+|++|++|++++.|+++++
T Consensus 151 raL~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 151 GVLAMDPDVIVLDEPMAYLDPRGQETLMEI-LDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 999999999999999999999998888754 4444 35899999999999985 5999999999999999998654
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-36 Score=342.34 Aligned_cols=199 Identities=31% Similarity=0.426 Sum_probs=165.1
Q ss_pred EEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe---------------
Q 000452 618 IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT--------------- 682 (1495)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~--------------- 682 (1495)
++++|++++|+. ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 1 l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCC--ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence 468899999952 257999999999999999999999999999999999999999999999872
Q ss_pred -EEEEccCCcccC-ccHHHHHhcCCC------------CC---HHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccch
Q 000452 683 -KAYVAQSPWIQS-GKIEDNILFGKE------------MD---RERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSG 745 (1495)
Q Consensus 683 -~ayv~Q~~~l~~-~ti~enI~fg~~------------~~---~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSG 745 (1495)
++|++|++.++. .|++||+.++.. .. .++..+.++.+++.+ ....++.+|||
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~ 147 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLD-----------KAYQRADQLSG 147 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChh-----------hhCCCcccCCH
Confidence 689999988765 699999987531 11 123334445444432 23467789999
Q ss_pred HHHHHHHHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCccc-cCCEEEEEeCCEEEEec
Q 000452 746 GQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL-NSKTVLYVTHQVEFLP-AADLVLVIKDGKITQAG 823 (1495)
Q Consensus 746 GQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvIlvTH~~~~l~-~~d~i~~l~~G~i~~~g 823 (1495)
|||||++||||++.+|+++||||||++||+.+.+.+++.+..... .|+|+|++||+++.+. .||++++|++|++++.|
T Consensus 148 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~ 227 (241)
T cd03256 148 GQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDG 227 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeec
Confidence 999999999999999999999999999999998888764433223 3899999999999987 59999999999999999
Q ss_pred ChHHHH
Q 000452 824 KYTDVI 829 (1495)
Q Consensus 824 ~~~~l~ 829 (1495)
+++++.
T Consensus 228 ~~~~~~ 233 (241)
T cd03256 228 PPAELT 233 (241)
T ss_pred CHHHhh
Confidence 988763
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=334.80 Aligned_cols=187 Identities=31% Similarity=0.510 Sum_probs=159.5
Q ss_pred EEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe----------EEEEccC
Q 000452 620 IADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT----------KAYVAQS 689 (1495)
Q Consensus 620 ~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~----------~ayv~Q~ 689 (1495)
++|++++|+. .+++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|++|+
T Consensus 2 ~~~l~~~~~~--~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~ 79 (205)
T cd03226 2 IENISFSYKK--GTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQD 79 (205)
T ss_pred cccEEEEeCC--cCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecC
Confidence 5788999952 157999999999999999999999999999999999999999999999873 6899999
Q ss_pred C--cccCccHHHHHhcCCC---CCHHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHHHHHhccCCCEe
Q 000452 690 P--WIQSGKIEDNILFGKE---MDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIY 764 (1495)
Q Consensus 690 ~--~l~~~ti~enI~fg~~---~~~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~il 764 (1495)
| .+++.|++||+.++.. .++++.+++++.+++.+.+ .....+||||||||++||||++.+|+++
T Consensus 80 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~laral~~~p~ll 148 (205)
T cd03226 80 VDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALK-----------ERHPLSLSGGQKQRLAIAAALLSGKDLL 148 (205)
T ss_pred hhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhc-----------CCCchhCCHHHHHHHHHHHHHHhCCCEE
Confidence 7 4667899999988643 2234667777777775433 3556799999999999999999999999
Q ss_pred EecCcCCccCHHHHHHHHHHHHHHH-hCCCEEEEEecCCCcccc-CCEEEEEeCCEEE
Q 000452 765 LFDDPFSAVDAHTGSHLFKEVLLGL-LNSKTVLYVTHQVEFLPA-ADLVLVIKDGKIT 820 (1495)
Q Consensus 765 lLDep~saLD~~~~~~i~~~~~~~~-~~~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~ 820 (1495)
||||||++||+.+.+.+.+ ++... .+++|+|++||+++.+.. ||++++|++|+++
T Consensus 149 llDEPt~~LD~~~~~~l~~-~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 149 IFDEPTSGLDYKNMERVGE-LIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred EEeCCCccCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999888865 45444 468999999999999875 9999999999874
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-36 Score=340.17 Aligned_cols=206 Identities=23% Similarity=0.322 Sum_probs=171.7
Q ss_pred ceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccC----CccEEEEcCEeCCCCCHHHHhcccEEEcccCc-CC-C-
Q 000452 1264 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEP----AAGQILIDGIDISLIGLHDLRTRLSIIPQDPV-MF-E- 1336 (1495)
Q Consensus 1264 vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep----~~G~I~IDG~dI~~i~l~~LR~~isiIpQdp~-LF-~- 1336 (1495)
+|+|+||+|++||++||+|++|||||||+++|.|+++| ++|+|.+||.++... ...+++++|+||+|. .| +
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~ 78 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPL 78 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCcc
Confidence 58999999999999999999999999999999999999 899999999998754 223468999999995 34 3
Q ss_pred CcHHHhcCC----CCC---CCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCeEEEE
Q 000452 1337 GTVRSNVDP----LEE---YTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLD 1409 (1495)
Q Consensus 1337 GTIR~NLdp----~~~---~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALLr~~~ILiLD 1409 (1495)
-|+.+|+.. ... ..++++.++++.+++.+. +........+||+|||||++||||++++|+|||||
T Consensus 79 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLD 150 (230)
T TIGR02770 79 FTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDP--------EEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIAD 150 (230)
T ss_pred cCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCch--------HHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 488888631 111 123458888999888631 11223344679999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecCchhhh-ccCEEEEEeCcEEEEecChhHHhhcCCChHHH
Q 000452 1410 EATASVDTATDNLIQQSLRQHFS--DCTVITIAHRITSVI-DSDMVLLLSHGLIEEYDSPRKLLENKSSSFSQ 1479 (1495)
Q Consensus 1410 EaTsslD~~Td~~Iq~~Ir~~f~--~~TVI~IAHRl~ti~-~~DrIlVL~~G~ivE~gsp~~Ll~~~~s~f~~ 1479 (1495)
|||++||..+...+.+.|++..+ ++|||+++|+++.+. .||+|++|++|++++.|++++++..+...|.+
T Consensus 151 EPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~ 223 (230)
T TIGR02770 151 EPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETTR 223 (230)
T ss_pred CCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcCCHHHH
Confidence 99999999999999999998653 789999999999986 49999999999999999999998765555544
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-36 Score=357.57 Aligned_cols=202 Identities=27% Similarity=0.397 Sum_probs=169.8
Q ss_pred EEEEeeEEEecCCC-CCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcC---------------
Q 000452 618 IEIADGNFSWDISS-HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG--------------- 681 (1495)
Q Consensus 618 i~~~~~~~~~~~~~-~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g--------------- 681 (1495)
++++|++++|+..+ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999996322 35799999999999999999999999999999999999999999999987
Q ss_pred -eEEEEccCCcccC-ccHHHHHhcCCC---CCH----HHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHH
Q 000452 682 -TKAYVAQSPWIQS-GKIEDNILFGKE---MDR----ERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQ 752 (1495)
Q Consensus 682 -~~ayv~Q~~~l~~-~ti~enI~fg~~---~~~----~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~ 752 (1495)
.++|++|++.++. .|++||+.++.. .+. ++..+.++..+|.+. ......+||||||||++
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~-----------~~~~~~~LSgGq~qRv~ 150 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDK-----------ADRYPAQLSGGQKQRVA 150 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchh-----------hhCChhhCCHHHHHHHH
Confidence 2689999998875 699999987632 222 233444555554322 34567899999999999
Q ss_pred HHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHH-h-CCCEEEEEecCCCcccc-CCEEEEEeCCEEEEecChHHHH
Q 000452 753 IARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL-L-NSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYTDVI 829 (1495)
Q Consensus 753 LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~-~~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~ 829 (1495)
|||||+++|+++||||||++||+.+.+.+.+. +... . .|+|+|++||+++.+.. ||++++|++|++++.|+.+++.
T Consensus 151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~-L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 151 IARALASNPKVLLCDEATSALDPATTRSILEL-LKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVF 229 (343)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999998888764 4443 3 38999999999999875 9999999999999999999987
Q ss_pred hc
Q 000452 830 NS 831 (1495)
Q Consensus 830 ~~ 831 (1495)
..
T Consensus 230 ~~ 231 (343)
T PRK11153 230 SH 231 (343)
T ss_pred hC
Confidence 54
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-36 Score=336.44 Aligned_cols=198 Identities=23% Similarity=0.439 Sum_probs=167.5
Q ss_pred EEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe------------EEE
Q 000452 618 IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------KAY 685 (1495)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~------------~ay 685 (1495)
++++|+++.|+.. .+++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 79 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGY 79 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEE
Confidence 4689999999631 257999999999999999999999999999999999999999999999874 589
Q ss_pred EccCCccc-CccHHHHHhcCCC---CC----HHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHHHHHh
Q 000452 686 VAQSPWIQ-SGKIEDNILFGKE---MD----RERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARAL 757 (1495)
Q Consensus 686 v~Q~~~l~-~~ti~enI~fg~~---~~----~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl 757 (1495)
++|++.++ ..|++||+.++.. .. .++.+++++.+++.+.. .....+||||||||++||||+
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~la~al 148 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKA-----------NKRARTLSGGMKRKLSLAIAL 148 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH-----------hChhhhCCHHHHHHHHHHHHH
Confidence 99999887 6799999987421 22 23455667766665433 345679999999999999999
Q ss_pred ccCCCEeEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEecCCCcccc-CCEEEEEeCCEEEEecChHHH
Q 000452 758 YQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYTDV 828 (1495)
Q Consensus 758 ~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 828 (1495)
+.+|+++||||||++||+.+.+.+.+ .+....+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 149 ~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 149 IGGPSVLLLDEPTSGLDPASRRAIWD-LILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred hcCCCEEEECCCCCCCCHHHHHHHHH-HHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 99999999999999999999888875 45555557999999999999865 999999999999999988764
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-36 Score=337.52 Aligned_cols=190 Identities=33% Similarity=0.458 Sum_probs=158.2
Q ss_pred EEEEeeEEEecCCC-CCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcC---------------
Q 000452 618 IEIADGNFSWDISS-HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG--------------- 681 (1495)
Q Consensus 618 i~~~~~~~~~~~~~-~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g--------------- 681 (1495)
++++|++++|+... .+++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 46899999996321 15799999999999999999999999999999999999999999999876
Q ss_pred --eEEEEccCCcccCc-cHHHHHhcCCCC---C----HHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHH
Q 000452 682 --TKAYVAQSPWIQSG-KIEDNILFGKEM---D----RERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRI 751 (1495)
Q Consensus 682 --~~ayv~Q~~~l~~~-ti~enI~fg~~~---~----~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv 751 (1495)
.++|++|++.++.. |++||+.++..+ + +++.+++++.+++++. ..+.+.+||||||||+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv 149 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDR-----------LNHYPSELSGGQQQRV 149 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchh-----------hhcChhhcCHHHHHHH
Confidence 26899999988765 999999886432 1 2344555555555432 2466789999999999
Q ss_pred HHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHh--CCCEEEEEecCCCccccCCEEEEEeCCEE
Q 000452 752 QIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL--NSKTVLYVTHQVEFLPAADLVLVIKDGKI 819 (1495)
Q Consensus 752 ~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~--~~~tvIlvTH~~~~l~~~d~i~~l~~G~i 819 (1495)
+||||++.+|+++||||||++||+.+.+.+.+ ++.... +++|+|++||+++.+..||++++|++|++
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~-~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVME-LLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 99999999999999999999999999888875 454443 38999999999998878999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-36 Score=341.50 Aligned_cols=204 Identities=29% Similarity=0.423 Sum_probs=170.6
Q ss_pred cEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCC-----CcEEEEcCe---------
Q 000452 617 AIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKI-----SGTLKLCGT--------- 682 (1495)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~-----~G~v~~~g~--------- 682 (1495)
+++++|++++|+ +.++++|+||++++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.
T Consensus 1 ~l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~ 77 (247)
T TIGR00972 1 AIEIENLNLFYG---EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDV 77 (247)
T ss_pred CEEEEEEEEEEC---CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccch
Confidence 378999999996 246999999999999999999999999999999999999998 999998762
Q ss_pred ------EEEEccCCcccCccHHHHHhcCCC----CCH----HHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHH
Q 000452 683 ------KAYVAQSPWIQSGKIEDNILFGKE----MDR----ERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQK 748 (1495)
Q Consensus 683 ------~ayv~Q~~~l~~~ti~enI~fg~~----~~~----~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 748 (1495)
++|+||++++++.|++||+.++.. .+. ++.+++++..++.++++ ...+..+.+||||||
T Consensus 78 ~~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~ 150 (247)
T TIGR00972 78 VELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVK-------DRLHDSALGLSGGQQ 150 (247)
T ss_pred HHHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh-------hHhhCCcccCCHHHH
Confidence 689999999988999999987532 121 23445555555542221 123567889999999
Q ss_pred HHHHHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEecCCCcccc-CCEEEEEeCCEEEEecChHH
Q 000452 749 QRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYTD 827 (1495)
Q Consensus 749 qRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 827 (1495)
||++||||++.+|+++||||||++||+.+...+++ ++....+++|+|++||+++.+.. ||++++|++|++++.|++++
T Consensus 151 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 229 (247)
T TIGR00972 151 QRLCIARALAVEPEVLLLDEPTSALDPIATGKIEE-LIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQ 229 (247)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999888865 55555556899999999998765 99999999999999999988
Q ss_pred HHhc
Q 000452 828 VINS 831 (1495)
Q Consensus 828 l~~~ 831 (1495)
+...
T Consensus 230 ~~~~ 233 (247)
T TIGR00972 230 IFTN 233 (247)
T ss_pred HHhC
Confidence 7643
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-36 Score=358.58 Aligned_cols=203 Identities=28% Similarity=0.410 Sum_probs=172.6
Q ss_pred ccEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe-----------EE
Q 000452 616 TAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-----------KA 684 (1495)
Q Consensus 616 ~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~-----------~a 684 (1495)
..++++|++++|. +.++|+|+||++++||+++|+|||||||||||++|+|+.+|++|+|.++|. ++
T Consensus 18 ~~l~l~~v~~~~~---~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig 94 (377)
T PRK11607 18 PLLEIRNLTKSFD---GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPIN 94 (377)
T ss_pred ceEEEEeEEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEE
Confidence 4699999999995 246999999999999999999999999999999999999999999999984 68
Q ss_pred EEccCCcccC-ccHHHHHhcCCC---CCH----HHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHHHHH
Q 000452 685 YVAQSPWIQS-GKIEDNILFGKE---MDR----ERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARA 756 (1495)
Q Consensus 685 yv~Q~~~l~~-~ti~enI~fg~~---~~~----~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARA 756 (1495)
||+|++-++. .|+.|||.|+.. .++ ++.+++++..++.+. ...+..+|||||||||+||||
T Consensus 95 ~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~-----------~~~~~~~LSgGq~QRVaLARA 163 (377)
T PRK11607 95 MMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEF-----------AKRKPHQLSGGQRQRVALARS 163 (377)
T ss_pred EEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchh-----------hcCChhhCCHHHHHHHHHHHH
Confidence 9999999886 599999998743 222 234455555555432 246678999999999999999
Q ss_pred hccCCCEeEecCcCCccCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCccc-cCCEEEEEeCCEEEEecChHHHHhcC
Q 000452 757 LYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL-NSKTVLYVTHQVEFLP-AADLVLVIKDGKITQAGKYTDVINSG 832 (1495)
Q Consensus 757 l~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvIlvTH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 832 (1495)
|+.+|+++|||||||+||+...+.+.+.+..... .+.|+|+||||.+++. .||++++|++|++++.|+++++....
T Consensus 164 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p 241 (377)
T PRK11607 164 LAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHP 241 (377)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCC
Confidence 9999999999999999999998888765443333 3799999999999865 59999999999999999999998653
|
|
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-36 Score=326.67 Aligned_cols=177 Identities=32% Similarity=0.491 Sum_probs=161.5
Q ss_pred EEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccEEE
Q 000452 1249 DLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSII 1328 (1495)
Q Consensus 1249 ~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~isiI 1328 (1495)
+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|++++|+
T Consensus 1 ~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~ 78 (180)
T cd03214 1 EVENLSVGYGG--RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYV 78 (180)
T ss_pred CeeEEEEEECC--eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHH
Confidence 57899999964 4599999999999999999999999999999999999999999999999999998888889999999
Q ss_pred cccCcCCCCcHHHhcCCCCCCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCeEEE
Q 000452 1329 PQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILML 1408 (1495)
Q Consensus 1329 pQdp~LF~GTIR~NLdp~~~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALLr~~~ILiL 1408 (1495)
|| +++.+++.+.+.+ .+.+||+|||||++||||++++|+++||
T Consensus 79 ~q--------------------------~l~~~gl~~~~~~-----------~~~~LS~G~~qrl~laral~~~p~llll 121 (180)
T cd03214 79 PQ--------------------------ALELLGLAHLADR-----------PFNELSGGERQRVLLARALAQEPPILLL 121 (180)
T ss_pred HH--------------------------HHHHcCCHhHhcC-----------CcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99 7888888765543 3457999999999999999999999999
Q ss_pred EcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecCchhhh-ccCEEEEEeCcEEEEec
Q 000452 1409 DEATASVDTATDNLIQQSLRQHFS--DCTVITIAHRITSVI-DSDMVLLLSHGLIEEYD 1464 (1495)
Q Consensus 1409 DEaTsslD~~Td~~Iq~~Ir~~f~--~~TVI~IAHRl~ti~-~~DrIlVL~~G~ivE~g 1464 (1495)
||||++||.++...+.+.|++..+ ++|+|+++|+++.+. .||++++|++|++++.|
T Consensus 122 DEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 122 DEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred eCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999988754 789999999999985 59999999999998754
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-36 Score=335.79 Aligned_cols=204 Identities=28% Similarity=0.459 Sum_probs=175.2
Q ss_pred cccEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe------------
Q 000452 615 ETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------ 682 (1495)
Q Consensus 615 ~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~------------ 682 (1495)
...++++|++++|+..+..++|+|+||++++|++++|+||||||||||+++|+|+.+|++|+|.++|.
T Consensus 9 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 88 (226)
T cd03248 9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS 88 (226)
T ss_pred CceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHh
Confidence 35699999999996432347999999999999999999999999999999999999999999999873
Q ss_pred -EEEEccCCcccCccHHHHHhcCCCC-CHHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHHHHHhccC
Q 000452 683 -KAYVAQSPWIQSGKIEDNILFGKEM-DRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQD 760 (1495)
Q Consensus 683 -~ayv~Q~~~l~~~ti~enI~fg~~~-~~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~ 760 (1495)
++|++|++.++..|++||+.++... ....+.+..+...+.+.++.++.|..+..++++.+|||||||||+||||++++
T Consensus 89 ~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~ 168 (226)
T cd03248 89 KVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRN 168 (226)
T ss_pred hEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcC
Confidence 6999999999989999999886532 22333333444566777888887777778899999999999999999999999
Q ss_pred CCEeEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEecCCCccccCCEEEEEeCCEE
Q 000452 761 ADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKI 819 (1495)
Q Consensus 761 ~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~~~d~i~~l~~G~i 819 (1495)
|+++||||||++||+++.+.+.+ .+....+++|+|++||+++++..||+|++|++|++
T Consensus 169 p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 169 PQVLILDEATSALDAESEQQVQQ-ALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CCEEEEeCCcccCCHHHHHHHHH-HHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 99999999999999999888865 45555557899999999999877999999999974
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-36 Score=343.05 Aligned_cols=205 Identities=27% Similarity=0.420 Sum_probs=171.6
Q ss_pred ccEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCC-----CCCcEEEEcC---------
Q 000452 616 TAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVP-----KISGTLKLCG--------- 681 (1495)
Q Consensus 616 ~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~-----~~~G~v~~~g--------- 681 (1495)
..++++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|+.+ |++|+|.++|
T Consensus 5 ~~l~~~~l~~~~~---~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (253)
T PRK14242 5 PKMEARGLSFFYG---DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81 (253)
T ss_pred cEEEEeeeEEEEC---CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccC
Confidence 3699999999995 2469999999999999999999999999999999999864 5899999877
Q ss_pred ------eEEEEccCCcccCccHHHHHhcCCC---C-C----HHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHH
Q 000452 682 ------TKAYVAQSPWIQSGKIEDNILFGKE---M-D----RERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQ 747 (1495)
Q Consensus 682 ------~~ayv~Q~~~l~~~ti~enI~fg~~---~-~----~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQ 747 (1495)
.++|++|++.+++.|++||+.++.. . + +++.++.++.+++.+.+. +..++.+.+|||||
T Consensus 82 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq 154 (253)
T PRK14242 82 VVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVK-------DRLHESALGLSGGQ 154 (253)
T ss_pred HHHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCHHH
Confidence 2689999999888899999987531 1 1 234455566666543222 23457788999999
Q ss_pred HHHHHHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEecCCCcccc-CCEEEEEeCCEEEEecChH
Q 000452 748 KQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYT 826 (1495)
Q Consensus 748 kqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 826 (1495)
||||+||||++.+|+++||||||++||+.+...+.+ .+....+++|+|++||+++++.. ||++++|++|++++.|+++
T Consensus 155 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 233 (253)
T PRK14242 155 QQRLCIARALAVEPEVLLMDEPASALDPIATQKIEE-LIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTE 233 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999888865 45555567899999999999865 9999999999999999998
Q ss_pred HHHhc
Q 000452 827 DVINS 831 (1495)
Q Consensus 827 ~l~~~ 831 (1495)
++.+.
T Consensus 234 ~~~~~ 238 (253)
T PRK14242 234 QIFTR 238 (253)
T ss_pred HHHcC
Confidence 87643
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-37 Score=318.96 Aligned_cols=216 Identities=25% Similarity=0.395 Sum_probs=185.6
Q ss_pred ceEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHH-Hhcc
Q 000452 1246 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHD-LRTR 1324 (1495)
Q Consensus 1246 g~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~-LR~~ 1324 (1495)
+.+..+|+..+|... .|++||||++++||.||+.||+||||||.+.++.|++.|++|+|.+||.||+.++.+. -|-.
T Consensus 3 ~~L~a~~l~K~y~kr--~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlG 80 (243)
T COG1137 3 STLVAENLAKSYKKR--KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLG 80 (243)
T ss_pred cEEEehhhhHhhCCe--eeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcC
Confidence 467889999999754 5999999999999999999999999999999999999999999999999999999887 4677
Q ss_pred cEEEcccCcCCCC-cHHHhcCCCCCCC---------HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHH
Q 000452 1325 LSIIPQDPVMFEG-TVRSNVDPLEEYT---------DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVC 1394 (1495)
Q Consensus 1325 isiIpQdp~LF~G-TIR~NLdp~~~~s---------d~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~ 1394 (1495)
|||+||||.+|.+ ||++||...-+.. .+++.+.|+..++... + ...|..||||||+|+-
T Consensus 81 igYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hl-r----------~~~a~sLSGGERRR~E 149 (243)
T COG1137 81 IGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHL-R----------DSKAYSLSGGERRRVE 149 (243)
T ss_pred cccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHH-h----------cCcccccccchHHHHH
Confidence 9999999999988 9999996432221 1224445555554322 2 2346789999999999
Q ss_pred HHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCch-hhhccCEEEEEeCcEEEEecChhHHhhc
Q 000452 1395 LGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHF-SDCTVITIAHRIT-SVIDSDMVLLLSHGLIEEYDSPRKLLEN 1472 (1495)
Q Consensus 1395 LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f-~~~TVI~IAHRl~-ti~~~DrIlVL~~G~ivE~gsp~~Ll~~ 1472 (1495)
|||||..+|+.++||||.|++||.+-..||+.|+... ++--|++.-|... |+.-|||.+++.+|+|...|+|+++.+|
T Consensus 150 IARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n 229 (243)
T COG1137 150 IARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNN 229 (243)
T ss_pred HHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcC
Confidence 9999999999999999999999999999999998875 4678999999985 6777999999999999999999999987
Q ss_pred CC
Q 000452 1473 KS 1474 (1495)
Q Consensus 1473 ~~ 1474 (1495)
+.
T Consensus 230 ~~ 231 (243)
T COG1137 230 ED 231 (243)
T ss_pred hh
Confidence 53
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-36 Score=336.40 Aligned_cols=197 Identities=27% Similarity=0.467 Sum_probs=163.6
Q ss_pred EEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe--------------E
Q 000452 618 IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT--------------K 683 (1495)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~--------------~ 683 (1495)
++++|++++|+ ++++++|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|. +
T Consensus 1 l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (222)
T cd03224 1 LEVENLNAGYG---KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGI 77 (222)
T ss_pred CEEeeEEeecC---CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCe
Confidence 46899999995 247999999999999999999999999999999999999999999999872 6
Q ss_pred EEEccCCcccCc-cHHHHHhcCCCCC-----HHHHHHHHHHh-CcHHHHhhcCCCCcccccCCCCccchHHHHHHHHHHH
Q 000452 684 AYVAQSPWIQSG-KIEDNILFGKEMD-----RERYNAVLDAC-SLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARA 756 (1495)
Q Consensus 684 ayv~Q~~~l~~~-ti~enI~fg~~~~-----~~~~~~vl~~~-~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARA 756 (1495)
+|++|++.++.. |++||+.++.... .++.+++++.+ ++. ...+.++.+||||||||++||||
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~-----------~~~~~~~~~LS~G~~qrv~lara 146 (222)
T cd03224 78 GYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLK-----------ERRKQLAGTLSGGEQQMLAIARA 146 (222)
T ss_pred EEeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhh-----------hhhhCchhhCCHHHHHHHHHHHH
Confidence 899999988765 9999998864321 11223333332 121 12346788999999999999999
Q ss_pred hccCCCEeEecCcCCccCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCcccc-CCEEEEEeCCEEEEecChHHHH
Q 000452 757 LYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL-NSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYTDVI 829 (1495)
Q Consensus 757 l~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~ 829 (1495)
+..+|+++||||||++||+.+.+.+.+. +.... +++|+|++||+++.+.. ||++++|++|++.+.|+.+++.
T Consensus 147 l~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 147 LMSRPKLLLLDEPSEGLAPKIVEEIFEA-IRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred HhcCCCEEEECCCcccCCHHHHHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 9999999999999999999998888764 44433 58999999999998765 9999999999999999887764
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-36 Score=338.07 Aligned_cols=199 Identities=26% Similarity=0.449 Sum_probs=167.8
Q ss_pred EEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe------------EEE
Q 000452 618 IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------KAY 685 (1495)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~------------~ay 685 (1495)
++++|++++|+ ++++|+|+||++++|++++|+||||||||||+++|+|+.+|++|+|.++|. ++|
T Consensus 2 l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~ 78 (236)
T TIGR03864 2 LEVAGLSFAYG---ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGV 78 (236)
T ss_pred EEEEeeEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEE
Confidence 68899999995 357999999999999999999999999999999999999999999999873 689
Q ss_pred EccCCcc-cCccHHHHHhcCCC---CCH----HHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHHHHHh
Q 000452 686 VAQSPWI-QSGKIEDNILFGKE---MDR----ERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARAL 757 (1495)
Q Consensus 686 v~Q~~~l-~~~ti~enI~fg~~---~~~----~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl 757 (1495)
++|++.+ +..|++||+.++.. ... ++..+.++..++.+ ..++++.+||||||||++||||+
T Consensus 79 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LS~G~~qrl~laral 147 (236)
T TIGR03864 79 VFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAE-----------RADDKVRELNGGHRRRVEIARAL 147 (236)
T ss_pred eCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-----------hhcCChhhCCHHHHHHHHHHHHH
Confidence 9999877 56799999976532 222 22334444444432 24567789999999999999999
Q ss_pred ccCCCEeEecCcCCccCHHHHHHHHHHHHHHHh--CCCEEEEEecCCCccccCCEEEEEeCCEEEEecChHHHHhc
Q 000452 758 YQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL--NSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVINS 831 (1495)
Q Consensus 758 ~~~~~illLDep~saLD~~~~~~i~~~~~~~~~--~~~tvIlvTH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 831 (1495)
+.+|+++||||||++||+.+.+.+.+. +.... +++|+|++||+++.+..||++++|++|++++.|+++++.+.
T Consensus 148 ~~~p~llllDEP~~~LD~~~~~~l~~~-l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 148 LHRPALLLLDEPTVGLDPASRAAIVAH-VRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHH-HHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 999999999999999999999888764 44443 48999999999999878999999999999999998887654
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-36 Score=338.16 Aligned_cols=198 Identities=26% Similarity=0.419 Sum_probs=165.5
Q ss_pred EEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe--------------E
Q 000452 618 IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT--------------K 683 (1495)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~--------------~ 683 (1495)
++++|+++.|+ ++++|+|+||++++|++++|+||||||||||+++|+|..+|++|+|.++|. +
T Consensus 1 l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 77 (232)
T cd03218 1 LRAENLSKRYG---KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI 77 (232)
T ss_pred CeEEEEEEEeC---CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE
Confidence 46899999995 346999999999999999999999999999999999999999999999772 6
Q ss_pred EEEccCCcccCc-cHHHHHhcCCC---CCH----HHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHHHH
Q 000452 684 AYVAQSPWIQSG-KIEDNILFGKE---MDR----ERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIAR 755 (1495)
Q Consensus 684 ayv~Q~~~l~~~-ti~enI~fg~~---~~~----~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LAR 755 (1495)
+|++|++.++.. |++||+.++.+ ... ++.++.++..++.+ ...+...+||||||||++|||
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrl~la~ 146 (232)
T cd03218 78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITH-----------LRKSKASSLSGGERRRVEIAR 146 (232)
T ss_pred EEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-----------hhhCChhhCCHHHHHHHHHHH
Confidence 899999988765 99999987532 111 22334444444432 235677899999999999999
Q ss_pred HhccCCCEeEecCcCCccCHHHHHHHHHHHHHHH-hCCCEEEEEecCCCcccc-CCEEEEEeCCEEEEecChHHHHh
Q 000452 756 ALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL-LNSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYTDVIN 830 (1495)
Q Consensus 756 Al~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~~~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 830 (1495)
|++.+|+++||||||++||+.+.+.+.+ ++... .+++|+|++||+++.+.. ||++++|++|++.+.|+.+++..
T Consensus 147 al~~~p~llllDEPt~~LD~~~~~~~~~-~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 147 ALATNPKFLLLDEPFAGVDPIAVQDIQK-IIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred HHhcCCCEEEecCCcccCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 9999999999999999999999888876 44444 358999999999988765 99999999999999999887653
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=335.53 Aligned_cols=175 Identities=21% Similarity=0.330 Sum_probs=131.0
Q ss_pred EeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccEEEcccC-cCCCCcHHHhcCCCC--
Q 000452 1271 TFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSIIPQDP-VMFEGTVRSNVDPLE-- 1347 (1495)
Q Consensus 1271 ~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~isiIpQdp-~LF~GTIR~NLdp~~-- 1347 (1495)
+|..||.+||+||+|-||||++++|.|.++|++|+ ..+ -+++|=||-- .-|+|||++-|.-..
T Consensus 363 ~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~----------~~vSyKPQyI~~~~~gtV~~~l~~~~~~ 428 (591)
T COG1245 363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EED----------LKVSYKPQYISPDYDGTVEDLLRSAIRS 428 (591)
T ss_pred eeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Ccc----------ceEeecceeecCCCCCcHHHHHHHhhhh
Confidence 45567899999999999999999999999999998 222 2589999964 348999988764211
Q ss_pred CCCHHHHHH-HHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHH
Q 000452 1348 EYTDEQIWE-ALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQS 1426 (1495)
Q Consensus 1348 ~~sd~ei~~-aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~ 1426 (1495)
.+.+.-.+. ..+ |-.++-.+...-.+|||||.||+++|-||.|++++.+||||+|.||.+..-.+-++
T Consensus 429 ~~~~s~~~~ei~~-----------pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakv 497 (591)
T COG1245 429 AFGSSYFKTEIVK-----------PLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKV 497 (591)
T ss_pred hcccchhHHhhcC-----------ccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHH
Confidence 122222211 112 33333333344457999999999999999999999999999999999999999999
Q ss_pred HHHhc--CCcEEEEEecCchhhhc-cCEEEEEeC--cEEEEecChhHHh
Q 000452 1427 LRQHF--SDCTVITIAHRITSVID-SDMVLLLSH--GLIEEYDSPRKLL 1470 (1495)
Q Consensus 1427 Ir~~f--~~~TVI~IAHRl~ti~~-~DrIlVL~~--G~ivE~gsp~~Ll 1470 (1495)
||+.. .++|.++|-|++-.+.. +||++|.+. |+=-....|..+.
T Consensus 498 IRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~GePg~~g~a~~P~~mr 546 (591)
T COG1245 498 IRRFIENNEKTALVVDHDIYMIDYVSDRLIVFEGEPGKHGHASPPMSMR 546 (591)
T ss_pred HHHHHhhcCceEEEEecceehhhhhhceEEEEecCCCccCcCCCCccHH
Confidence 98754 57899999999988865 999999963 2222233455554
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-36 Score=344.52 Aligned_cols=199 Identities=30% Similarity=0.485 Sum_probs=169.3
Q ss_pred EEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe--------------E
Q 000452 618 IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT--------------K 683 (1495)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~--------------~ 683 (1495)
++++|++++|+. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. +
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 2 IRLENVSYSYPD--GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred EEEEEEEEEcCC--CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence 689999999952 346999999999999999999999999999999999999999999999872 5
Q ss_pred EEEccCCc--ccCccHHHHHhcCCC---CC----HHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHHH
Q 000452 684 AYVAQSPW--IQSGKIEDNILFGKE---MD----RERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIA 754 (1495)
Q Consensus 684 ayv~Q~~~--l~~~ti~enI~fg~~---~~----~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LA 754 (1495)
+|++|+|. +++.|++|||.++.. .+ .++.+++++.+++.... ...+.+||||||||++||
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LS~G~~qrv~la 148 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYR-----------HRSPKTLSGGQGQCVALA 148 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHh-----------cCCcccCCHHHHHHHHHH
Confidence 89999986 467899999988642 22 23445556666665433 356789999999999999
Q ss_pred HHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHH-hCCCEEEEEecCCCccccCCEEEEEeCCEEEEecChHHHHh
Q 000452 755 RALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL-LNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVIN 830 (1495)
Q Consensus 755 RAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~~~~tvIlvTH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~ 830 (1495)
||++.+|+++||||||++||+.+...+++. +..+ .+|+|+|++||+++.++.||++++|++|++++.|+.+++..
T Consensus 149 ral~~~p~lllLDEPt~gLD~~~~~~l~~~-l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 224 (274)
T PRK13644 149 GILTMEPECLIFDEVTSMLDPDSGIAVLER-IKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLS 224 (274)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhc
Confidence 999999999999999999999998888764 4443 35899999999999987799999999999999999988754
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-36 Score=350.50 Aligned_cols=202 Identities=25% Similarity=0.403 Sum_probs=168.8
Q ss_pred ccEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe------------E
Q 000452 616 TAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------K 683 (1495)
Q Consensus 616 ~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~------------~ 683 (1495)
..++++|++++|+ ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|. +
T Consensus 3 ~~i~~~~l~~~~~---~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i 79 (303)
T TIGR01288 3 VAIDLVGVSKSYG---DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAI 79 (303)
T ss_pred cEEEEEeEEEEeC---CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcE
Confidence 4689999999995 356999999999999999999999999999999999999999999999873 6
Q ss_pred EEEccCCccc-CccHHHHHhcC-C--CCCH----HHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHHHH
Q 000452 684 AYVAQSPWIQ-SGKIEDNILFG-K--EMDR----ERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIAR 755 (1495)
Q Consensus 684 ayv~Q~~~l~-~~ti~enI~fg-~--~~~~----~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LAR 755 (1495)
+|+||++.++ ..|++||+.+. . ..+. ++.+++++.+++.+. ...+..+||||||||++|||
T Consensus 80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~-----------~~~~~~~LSgG~~qrv~la~ 148 (303)
T TIGR01288 80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESK-----------ADVRVALLSGGMKRRLTLAR 148 (303)
T ss_pred EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhH-----------hcCchhhCCHHHHHHHHHHH
Confidence 8999999887 46999999742 1 1222 233344555555332 23566799999999999999
Q ss_pred HhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEecCCCcccc-CCEEEEEeCCEEEEecChHHHHhc
Q 000452 756 ALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYTDVINS 831 (1495)
Q Consensus 756 Al~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 831 (1495)
|++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++++.. ||++++|++|+++..|+++++...
T Consensus 149 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 149 ALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 9999999999999999999999888876443333458999999999999865 999999999999999999988643
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=344.50 Aligned_cols=202 Identities=31% Similarity=0.480 Sum_probs=172.6
Q ss_pred cEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe-------------E
Q 000452 617 AIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------K 683 (1495)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~-------------~ 683 (1495)
.++++|+++.|+. ..+++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|. +
T Consensus 5 ~l~~~~l~~~~~~-~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 5 IIRVEHISFRYPD-AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred eEEEEEEEEEeCC-CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 5899999999953 2357999999999999999999999999999999999999999999999883 5
Q ss_pred EEEccCC--cccCccHHHHHhcCCC---CCH----HHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHHH
Q 000452 684 AYVAQSP--WIQSGKIEDNILFGKE---MDR----ERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIA 754 (1495)
Q Consensus 684 ayv~Q~~--~l~~~ti~enI~fg~~---~~~----~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LA 754 (1495)
+|++|+| .+++.|++|||.++.. .++ ++.+++++.++|.+.++ ....+||||||||++||
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LS~G~~qrv~la 152 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLN-----------REPHRLSGGQKQRVAIA 152 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhh-----------CCcccCCHHHHHHHHHH
Confidence 8999998 4567899999988632 222 34566677777765443 55679999999999999
Q ss_pred HHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHh-C-CCEEEEEecCCCccccCCEEEEEeCCEEEEecChHHHHhc
Q 000452 755 RALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL-N-SKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVINS 831 (1495)
Q Consensus 755 RAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~-~~tvIlvTH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 831 (1495)
||++.+|+++||||||++||+.+.+.+++. +.... + ++|+|++||+++.+..||+|++|++|++++.|+.+++...
T Consensus 153 ral~~~p~lllLDEPt~gLD~~~~~~l~~~-l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13635 153 GVLALQPDIIILDEATSMLDPRGRREVLET-VRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKS 230 (279)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999999999888764 44443 3 7999999999998878999999999999999999887643
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-36 Score=337.71 Aligned_cols=201 Identities=30% Similarity=0.453 Sum_probs=167.0
Q ss_pred EEEEeeEEEecCCC-CCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe--------------
Q 000452 618 IEIADGNFSWDISS-HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------- 682 (1495)
Q Consensus 618 i~~~~~~~~~~~~~-~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~-------------- 682 (1495)
++++|++++|+... ..++|+|+||++++||+++|+||||||||||+++|+|.++|++|+|.++|.
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 68899999996321 127999999999999999999999999999999999999999999998763
Q ss_pred --EEEEccCCcccC-ccHHHHHhcCCC---CCH----HHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHH
Q 000452 683 --KAYVAQSPWIQS-GKIEDNILFGKE---MDR----ERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQ 752 (1495)
Q Consensus 683 --~ayv~Q~~~l~~-~ti~enI~fg~~---~~~----~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~ 752 (1495)
++|++|++.++. .|++||+.++.. .+. ++..+.++..++.+. ......+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~ 150 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDK-----------ADAYPAQLSGGQKQRVG 150 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhh-----------hhcChhhCCHHHHHHHH
Confidence 589999999886 699999987532 222 233445555555432 23567899999999999
Q ss_pred HHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHH-hC-CCEEEEEecCCCcccc-CCEEEEEeCCEEEEecChHHHH
Q 000452 753 IARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL-LN-SKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYTDVI 829 (1495)
Q Consensus 753 LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~~-~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~ 829 (1495)
||||++.+|+++||||||++||+.+.+.+++ ++... .+ ++|+|++||+++.+.. ||++++|++|++++.|+.+++.
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~-~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILA-LLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVF 229 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHH-HHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999999999999888875 44443 33 8999999999999865 9999999999999999988765
Q ss_pred h
Q 000452 830 N 830 (1495)
Q Consensus 830 ~ 830 (1495)
+
T Consensus 230 ~ 230 (233)
T cd03258 230 A 230 (233)
T ss_pred c
Confidence 3
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-36 Score=334.49 Aligned_cols=188 Identities=34% Similarity=0.540 Sum_probs=158.1
Q ss_pred EEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe--------EEEEccCCc
Q 000452 620 IADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT--------KAYVAQSPW 691 (1495)
Q Consensus 620 ~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~--------~ayv~Q~~~ 691 (1495)
++|++++|+ ++++++|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|++|++.
T Consensus 2 ~~~l~~~~~---~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~ 78 (213)
T cd03235 2 VEDLTVSYG---GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRS 78 (213)
T ss_pred cccceeEEC---CEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccc
Confidence 578899995 246999999999999999999999999999999999999999999999984 799999987
Q ss_pred c---cCccHHHHHhcCCCC-----------CHHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHHHHHh
Q 000452 692 I---QSGKIEDNILFGKEM-----------DRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARAL 757 (1495)
Q Consensus 692 l---~~~ti~enI~fg~~~-----------~~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl 757 (1495)
+ ++.|++||+.++... .+++.+++++.+++.+.++ ....+||||||||++||||+
T Consensus 79 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~la~al 147 (213)
T cd03235 79 IDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELAD-----------RQIGELSGGQQQRVLLARAL 147 (213)
T ss_pred cccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHh-----------CCcccCCHHHHHHHHHHHHH
Confidence 6 457999999876421 1234566677777764433 45679999999999999999
Q ss_pred ccCCCEeEecCcCCccCHHHHHHHHHHHHHHH-hCCCEEEEEecCCCcccc-CCEEEEEeCCEEEEec
Q 000452 758 YQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL-LNSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAG 823 (1495)
Q Consensus 758 ~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~~~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~~~g 823 (1495)
..+|+++||||||++||+.+.+.+.+. +... .+++|+|++||+++++.. ||++++|++| +++.|
T Consensus 148 ~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 148 VQDPDLLLLDEPFAGVDPKTQEDIYEL-LRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 999999999999999999998888764 4443 368999999999999865 9999999886 55443
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-36 Score=337.87 Aligned_cols=196 Identities=26% Similarity=0.384 Sum_probs=163.8
Q ss_pred cEEEEeeEEEecCCC-CCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcC--------------
Q 000452 617 AIEIADGNFSWDISS-HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG-------------- 681 (1495)
Q Consensus 617 ~i~~~~~~~~~~~~~-~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g-------------- 681 (1495)
.++++|+++.|+... .+++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 589999999996322 14799999999999999999999999999999999999999999999987
Q ss_pred ---eEEEEccCCcccC-ccHHHHHhcCC---CCC----HHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHH
Q 000452 682 ---TKAYVAQSPWIQS-GKIEDNILFGK---EMD----RERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQR 750 (1495)
Q Consensus 682 ---~~ayv~Q~~~l~~-~ti~enI~fg~---~~~----~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqR 750 (1495)
.++|++|++.++. .|++||+.++. ..+ +++..++++.+++.+. ..+...+||||||||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgG~~qr 153 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHR-----------ANHRPSELSGGERQR 153 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchh-----------hhCChhhCCHHHHHH
Confidence 2689999998876 49999998742 122 2234455665555332 346678999999999
Q ss_pred HHHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHH-h-CCCEEEEEecCCCccccCCEEEEEeCCEEEEecC
Q 000452 751 IQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL-L-NSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGK 824 (1495)
Q Consensus 751 v~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~-~~~tvIlvTH~~~~l~~~d~i~~l~~G~i~~~g~ 824 (1495)
++||||++.+|+++||||||++||+.+.+.+.+ ++... . +|+|+|++||+++++..+|++++|++|++++.|+
T Consensus 154 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 154 VAIARALVNNPRLVLADEPTGNLDARNADSIFQ-LLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 999999999999999999999999999888875 44444 3 4899999999999988888999999999998765
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-36 Score=347.31 Aligned_cols=203 Identities=25% Similarity=0.440 Sum_probs=169.5
Q ss_pred cEEEEeeEEEecCCC--CCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe------------
Q 000452 617 AIEIADGNFSWDISS--HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------ 682 (1495)
Q Consensus 617 ~i~~~~~~~~~~~~~--~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~------------ 682 (1495)
.++++|++++|+... .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 478999999996321 246999999999999999999999999999999999999999999999873
Q ss_pred -----EEEEccCC--cccCccHHHHHhcCCC---CCH----HHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHH
Q 000452 683 -----KAYVAQSP--WIQSGKIEDNILFGKE---MDR----ERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQK 748 (1495)
Q Consensus 683 -----~ayv~Q~~--~l~~~ti~enI~fg~~---~~~----~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 748 (1495)
++|++|+| .++..|++|||.|+.. .+. ++.+++++.++|..+. ...+..+||||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~----------~~~~~~~LSgGq~ 151 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDL----------ISKSPFELSGGQM 151 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhH----------hhCCcccCCHHHH
Confidence 58999998 4667899999987532 222 2345556666664222 2466789999999
Q ss_pred HHHHHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCcccc-CCEEEEEeCCEEEEecChH
Q 000452 749 QRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL-NSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYT 826 (1495)
Q Consensus 749 qRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 826 (1495)
||++||||++.+|+++||||||++||+...+.+.+ ++..+. +|+|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus 152 qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~-~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 230 (287)
T PRK13641 152 RRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQ-LFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPK 230 (287)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999888765 455443 58999999999999865 9999999999999999998
Q ss_pred HHHh
Q 000452 827 DVIN 830 (1495)
Q Consensus 827 ~l~~ 830 (1495)
++..
T Consensus 231 ~~~~ 234 (287)
T PRK13641 231 EIFS 234 (287)
T ss_pred HHhc
Confidence 8754
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-36 Score=340.65 Aligned_cols=203 Identities=26% Similarity=0.387 Sum_probs=172.4
Q ss_pred cEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCC---CCCcEEEEcCe-----------
Q 000452 617 AIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVP---KISGTLKLCGT----------- 682 (1495)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~---~~~G~v~~~g~----------- 682 (1495)
.++++|+++.|+ ++++|+|+||++++||+++|+|+||||||||+++|+|+++ |++|+|.++|.
T Consensus 2 ~~~~~~l~~~~~---~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~ 78 (246)
T PRK14269 2 IAKTTNLNLFYG---KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR 78 (246)
T ss_pred ceeeeeeEEEEC---CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence 478999999995 2579999999999999999999999999999999999974 69999999873
Q ss_pred --EEEEccCCcccCccHHHHHhcCCCC---------CHHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHH
Q 000452 683 --KAYVAQSPWIQSGKIEDNILFGKEM---------DRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRI 751 (1495)
Q Consensus 683 --~ayv~Q~~~l~~~ti~enI~fg~~~---------~~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv 751 (1495)
++|+||++.+++.|++||+.++... .+++.+++++.+++.+.+.. ...+++.+||||||||+
T Consensus 79 ~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~qrv 151 (246)
T PRK14269 79 KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKD-------KLKQNALALSGGQQQRL 151 (246)
T ss_pred hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhH-------HhcCCcccCCHHHHHHH
Confidence 6999999999999999999875321 12245566777777544331 23567889999999999
Q ss_pred HHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEecCCCcccc-CCEEEEEeCCEEEEecChHHHHh
Q 000452 752 QIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYTDVIN 830 (1495)
Q Consensus 752 ~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 830 (1495)
+||||++++|+++||||||++||+.+...+.+ ++....+++|+|++||+++.+.. ||++++|++|++++.|+.+++..
T Consensus 152 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~-~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 230 (246)
T PRK14269 152 CIARALAIKPKLLLLDEPTSALDPISSGVIEE-LLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFE 230 (246)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999887765 55555568999999999998865 99999999999999999988764
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-36 Score=334.02 Aligned_cols=192 Identities=30% Similarity=0.442 Sum_probs=160.6
Q ss_pred EEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe-----------EEEE
Q 000452 618 IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-----------KAYV 686 (1495)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~-----------~ayv 686 (1495)
++++|++++|+. +++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|+
T Consensus 1 i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~ 77 (213)
T cd03301 1 VELENVTKRFGN---VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMV 77 (213)
T ss_pred CEEEeeEEEECC---eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEE
Confidence 468999999962 47999999999999999999999999999999999999999999999872 6899
Q ss_pred ccCCcccC-ccHHHHHhcCCC---CCH----HHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHHHHHhc
Q 000452 687 AQSPWIQS-GKIEDNILFGKE---MDR----ERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALY 758 (1495)
Q Consensus 687 ~Q~~~l~~-~ti~enI~fg~~---~~~----~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~ 758 (1495)
+|++.++. .|++||+.++.. ... ++..+.++..++++. ..+...+||||||||++||||++
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qr~~laral~ 146 (213)
T cd03301 78 FQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHL-----------LDRKPKQLSGGQRQRVALGRAIV 146 (213)
T ss_pred ecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHH-----------HhCChhhCCHHHHHHHHHHHHHh
Confidence 99998874 699999987532 222 233445555555433 34567899999999999999999
Q ss_pred cCCCEeEecCcCCccCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCcccc-CCEEEEEeCCEEEEec
Q 000452 759 QDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL-NSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAG 823 (1495)
Q Consensus 759 ~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~~~g 823 (1495)
.+|+++||||||++||+++.+.+.+.+..... .++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 147 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 147 REPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999998888764333333 38999999999998765 9999999999998765
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=340.09 Aligned_cols=196 Identities=32% Similarity=0.386 Sum_probs=167.2
Q ss_pred ccEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe--------EEEEc
Q 000452 616 TAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT--------KAYVA 687 (1495)
Q Consensus 616 ~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~--------~ayv~ 687 (1495)
..++++|++++|+ ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|++
T Consensus 11 ~~l~i~~l~~~~~---~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~ 87 (257)
T PRK11247 11 TPLLLNAVSKRYG---ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMF 87 (257)
T ss_pred CcEEEEEEEEEEC---CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEe
Confidence 3599999999995 357999999999999999999999999999999999999999999999873 69999
Q ss_pred cCCcccC-ccHHHHHhcCCCC-CHHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHHHHHhccCCCEeE
Q 000452 688 QSPWIQS-GKIEDNILFGKEM-DRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYL 765 (1495)
Q Consensus 688 Q~~~l~~-~ti~enI~fg~~~-~~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ill 765 (1495)
|++.++. .|++||+.++... .+++..+.++.+++.+.+ .+++.+||||||||++||||++.+|+++|
T Consensus 88 q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgGqkqrl~laraL~~~p~lll 156 (257)
T PRK11247 88 QDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRA-----------NEWPAALSGGQKQRVALARALIHRPGLLL 156 (257)
T ss_pred cCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHh-----------cCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9998776 6999999886421 234556667766665432 46678999999999999999999999999
Q ss_pred ecCcCCccCHHHHHHHHHHHHHHH-h-CCCEEEEEecCCCcccc-CCEEEEEeCCEEEEecChH
Q 000452 766 FDDPFSAVDAHTGSHLFKEVLLGL-L-NSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYT 826 (1495)
Q Consensus 766 LDep~saLD~~~~~~i~~~~~~~~-~-~~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 826 (1495)
|||||++||+.+...+.+. +... . .++|+|++||+++++.. ||+|++|++|++++.|+.+
T Consensus 157 LDEPt~~LD~~~~~~l~~~-L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 157 LDEPLGALDALTRIEMQDL-IESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred EeCCCCCCCHHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 9999999999998888754 4443 3 37999999999998764 9999999999999877653
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=339.89 Aligned_cols=205 Identities=27% Similarity=0.396 Sum_probs=171.1
Q ss_pred ccEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCC-----CCcEEEEcCe--------
Q 000452 616 TAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPK-----ISGTLKLCGT-------- 682 (1495)
Q Consensus 616 ~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~-----~~G~v~~~g~-------- 682 (1495)
..++++|++++|+ ++++|+|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|.
T Consensus 6 ~~l~~~~l~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (254)
T PRK14273 6 AIIETENLNLFYT---DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82 (254)
T ss_pred ceEEEeeeEEEeC---CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEeccccccc
Confidence 3699999999995 24699999999999999999999999999999999999987 5899998762
Q ss_pred -------EEEEccCCcccCccHHHHHhcCCCC----CH----HHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHH
Q 000452 683 -------KAYVAQSPWIQSGKIEDNILFGKEM----DR----ERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQ 747 (1495)
Q Consensus 683 -------~ayv~Q~~~l~~~ti~enI~fg~~~----~~----~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQ 747 (1495)
++|++|++.+++.|++|||.++... +. ++..+.++.+++.+.+. .....++.+|||||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LSgG~ 155 (254)
T PRK14273 83 ILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVK-------DKLNTNALSLSGGQ 155 (254)
T ss_pred HHHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhH-------HHHhCCcccCCHHH
Confidence 6899999999889999999886421 21 23344555555532221 12345788999999
Q ss_pred HHHHHHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEecCCCcccc-CCEEEEEeCCEEEEecChH
Q 000452 748 KQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYT 826 (1495)
Q Consensus 748 kqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 826 (1495)
|||++||||++.+|+++||||||++||+.+.+.+++ ++....+++|+|++||+++++.. ||++++|++|++++.|+++
T Consensus 156 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 234 (254)
T PRK14273 156 QQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEE-LIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTD 234 (254)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999888875 45555567899999999999765 9999999999999999999
Q ss_pred HHHhc
Q 000452 827 DVINS 831 (1495)
Q Consensus 827 ~l~~~ 831 (1495)
++.+.
T Consensus 235 ~~~~~ 239 (254)
T PRK14273 235 ELFFN 239 (254)
T ss_pred HHHhC
Confidence 88654
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=328.89 Aligned_cols=189 Identities=26% Similarity=0.436 Sum_probs=162.7
Q ss_pred ccEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcC-------------e
Q 000452 616 TAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG-------------T 682 (1495)
Q Consensus 616 ~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g-------------~ 682 (1495)
..++++|++++|+.. .+++++|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++| .
T Consensus 5 ~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 83 (207)
T cd03369 5 GEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSS 83 (207)
T ss_pred CeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 358999999999632 24799999999999999999999999999999999999999999999987 3
Q ss_pred EEEEccCCcccCccHHHHHhcCCCCCHHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHHHHHhccCCC
Q 000452 683 KAYVAQSPWIQSGKIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDAD 762 (1495)
Q Consensus 683 ~ayv~Q~~~l~~~ti~enI~fg~~~~~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ 762 (1495)
++|++|+|.++++|++||+.+...++.++..+.++ +++++.+||||||||++||||++.+|+
T Consensus 84 i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~~p~ 145 (207)
T cd03369 84 LTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLKRPR 145 (207)
T ss_pred EEEEecCCcccCccHHHHhcccCCCCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 69999999999999999997755444333222221 346788999999999999999999999
Q ss_pred EeEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEecCCCccccCCEEEEEeCCEEEEecC
Q 000452 763 IYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGK 824 (1495)
Q Consensus 763 illLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~~~d~i~~l~~G~i~~~g~ 824 (1495)
++||||||++||+.+.+.+.+ .+....+++|+|++||+++.+..||++++|++|++.+.|+
T Consensus 146 llllDEP~~~LD~~~~~~l~~-~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~ 206 (207)
T cd03369 146 VLVLDEATASIDYATDALIQK-TIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206 (207)
T ss_pred EEEEeCCcccCCHHHHHHHHH-HHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCC
Confidence 999999999999999887765 4554556899999999999987799999999999988775
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-36 Score=358.07 Aligned_cols=200 Identities=25% Similarity=0.444 Sum_probs=172.1
Q ss_pred cEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe-------------E
Q 000452 617 AIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------K 683 (1495)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~-------------~ 683 (1495)
.++++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|. +
T Consensus 3 ~L~~~nls~~y~---~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 3 MIDVSDLSVEFG---DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred eEEEeeEEEEEC---CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence 588999999995 357999999999999999999999999999999999999999999999882 6
Q ss_pred EEEccCCcc-cCccHHHHHhcCCC-----C------CHHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHH
Q 000452 684 AYVAQSPWI-QSGKIEDNILFGKE-----M------DRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRI 751 (1495)
Q Consensus 684 ayv~Q~~~l-~~~ti~enI~fg~~-----~------~~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv 751 (1495)
+||+|++.+ ++.|++||+.++.. + ++++.+++++..++.+.. .....+||||||||+
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~-----------~~~~~~LSgGerQRv 148 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFA-----------DRPVTSLSGGERQRV 148 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHH
Confidence 999999877 57899999988742 1 133455666666664332 356789999999999
Q ss_pred HHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHH-hCCCEEEEEecCCCcccc-CCEEEEEeCCEEEEecChHHHH
Q 000452 752 QIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL-LNSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYTDVI 829 (1495)
Q Consensus 752 ~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~~~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~ 829 (1495)
+|||||+++|+++||||||++||+.....+.+ +++.+ .+++|+|++||+++.+.. ||++++|++|++++.|++++++
T Consensus 149 ~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~-lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~ 227 (402)
T PRK09536 149 LLARALAQATPVLLLDEPTASLDINHQVRTLE-LVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVL 227 (402)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHH-HHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 99999999999999999999999999888875 44444 358899999999999865 9999999999999999999987
Q ss_pred hc
Q 000452 830 NS 831 (1495)
Q Consensus 830 ~~ 831 (1495)
..
T Consensus 228 ~~ 229 (402)
T PRK09536 228 TA 229 (402)
T ss_pred Cc
Confidence 54
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=344.83 Aligned_cols=200 Identities=27% Similarity=0.445 Sum_probs=171.4
Q ss_pred cEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe--------------
Q 000452 617 AIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------- 682 (1495)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~-------------- 682 (1495)
.++++|++++|+. ++++|+|+||+|++||+++|+|+||||||||+++|+|.++|++|+|.++|.
T Consensus 5 ~l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 5 ILKVEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred eEEEEeEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 6899999999952 357999999999999999999999999999999999999999999999873
Q ss_pred -EEEEccCC--cccCccHHHHHhcCCC---CC----HHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHH
Q 000452 683 -KAYVAQSP--WIQSGKIEDNILFGKE---MD----RERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQ 752 (1495)
Q Consensus 683 -~ayv~Q~~--~l~~~ti~enI~fg~~---~~----~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~ 752 (1495)
++|++|+| .+++.|++||+.++.. +. .++.+++++.++|.... ...+.+||||||||++
T Consensus 83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-----------~~~~~~LS~G~~qrl~ 151 (283)
T PRK13636 83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLK-----------DKPTHCLSFGQKKRVA 151 (283)
T ss_pred hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhh-----------hCCcccCCHHHHHHHH
Confidence 58999998 5678899999987532 22 23455666777765432 4678899999999999
Q ss_pred HHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHh-C-CCEEEEEecCCCccc-cCCEEEEEeCCEEEEecChHHHH
Q 000452 753 IARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL-N-SKTVLYVTHQVEFLP-AADLVLVIKDGKITQAGKYTDVI 829 (1495)
Q Consensus 753 LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~-~~tvIlvTH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~ 829 (1495)
|||||+.+|+++||||||++||+.+.+.+.+. +.... + |+|+|++||+++.+. .||++++|++|++++.|+++++.
T Consensus 152 laraL~~~p~lLilDEPt~gLD~~~~~~l~~~-l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 230 (283)
T PRK13636 152 IAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKL-LVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVF 230 (283)
T ss_pred HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHH-HHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999998888754 44443 3 899999999999987 59999999999999999999886
Q ss_pred h
Q 000452 830 N 830 (1495)
Q Consensus 830 ~ 830 (1495)
.
T Consensus 231 ~ 231 (283)
T PRK13636 231 A 231 (283)
T ss_pred c
Confidence 5
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-36 Score=352.38 Aligned_cols=203 Identities=26% Similarity=0.424 Sum_probs=170.0
Q ss_pred cccEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe------------
Q 000452 615 ETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------ 682 (1495)
Q Consensus 615 ~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~------------ 682 (1495)
...|+++|++++|+ ++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 39 ~~~i~i~nl~k~y~---~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ 115 (340)
T PRK13536 39 TVAIDLAGVSKSYG---DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARAR 115 (340)
T ss_pred ceeEEEEEEEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhcc
Confidence 34699999999995 357999999999999999999999999999999999999999999999883
Q ss_pred EEEEccCCccc-CccHHHHHhc-CCC--CCH----HHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHHH
Q 000452 683 KAYVAQSPWIQ-SGKIEDNILF-GKE--MDR----ERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIA 754 (1495)
Q Consensus 683 ~ayv~Q~~~l~-~~ti~enI~f-g~~--~~~----~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LA 754 (1495)
++|+||++.++ ..|++||+.+ +.. .+. ++.+++++.++|.+. ..++..+||||||||++||
T Consensus 116 ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~-----------~~~~~~~LS~G~kqrv~lA 184 (340)
T PRK13536 116 IGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESK-----------ADARVSDLSGGMKRRLTLA 184 (340)
T ss_pred EEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchh-----------hCCChhhCCHHHHHHHHHH
Confidence 69999999885 5699999975 221 121 233344554444322 2456779999999999999
Q ss_pred HHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEecCCCcccc-CCEEEEEeCCEEEEecChHHHHhc
Q 000452 755 RALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYTDVINS 831 (1495)
Q Consensus 755 RAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 831 (1495)
|||+++|+++||||||++||+.+...+++.+.....+|+|||++||+++.+.. ||+|++|++|+++..|+++++...
T Consensus 185 ~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 185 RALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 99999999999999999999999988876443333358999999999999875 999999999999999999998653
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=356.27 Aligned_cols=227 Identities=26% Similarity=0.407 Sum_probs=193.0
Q ss_pred eEEEeeeeEEeCCCCC--cceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCC----ccEEEEcCEeCCCCCHHH
Q 000452 1247 KIDLRDLQVRYAPHMP--FVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPA----AGQILIDGIDISLIGLHD 1320 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~~~--~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~----~G~I~IDG~dI~~i~l~~ 1320 (1495)
-++++|++..|..... .+++||||+|.+||.+||||+|||||||++++|.|+.++. +|+|..||.|+..++.+.
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 6899999999975533 5999999999999999999999999999999999999987 899999999999999866
Q ss_pred Hh----cccEEEcccCc-CCCC--cHHHhcCC----C----CCCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCC
Q 000452 1321 LR----TRLSIIPQDPV-MFEG--TVRSNVDP----L----EEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENW 1385 (1495)
Q Consensus 1321 LR----~~isiIpQdp~-LF~G--TIR~NLdp----~----~~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nL 1385 (1495)
.| ++|++|||||. .++- ||.+-|.- . .+...++..+.|+++++.+-... ..-...|
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~---------~~yPheL 155 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR---------DRYPHQL 155 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh---------ccCCccc
Confidence 53 57999999995 5554 66655531 1 11124567888999998765544 1224578
Q ss_pred CchHHHHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCchhhhc-cCEEEEEeCcEEEE
Q 000452 1386 SMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHF--SDCTVITIAHRITSVID-SDMVLLLSHGLIEE 1462 (1495)
Q Consensus 1386 S~GQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f--~~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE 1462 (1495)
|||||||+.||+||..+|++||+||||.+||..|.+.|.+.|++.. .+.++|+|||++..+.. ||||+||++|+++|
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE 235 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVE 235 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999876 58899999999999987 99999999999999
Q ss_pred ecChhHHhhcCCChHHHHHH
Q 000452 1463 YDSPRKLLENKSSSFSQLVA 1482 (1495)
Q Consensus 1463 ~gsp~~Ll~~~~s~f~~lv~ 1482 (1495)
.|+++++++++...|.+..-
T Consensus 236 ~G~~~~i~~~p~hpYT~~Ll 255 (539)
T COG1123 236 TGPTEEILSNPQHPYTRGLL 255 (539)
T ss_pred ecCHHHHHhccCCcccHHHH
Confidence 99999999987766655443
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-36 Score=310.43 Aligned_cols=213 Identities=25% Similarity=0.376 Sum_probs=185.5
Q ss_pred EEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccEE
Q 000452 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSI 1327 (1495)
Q Consensus 1248 I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~isi 1327 (1495)
+++.+++.+|++ ...+++||||+++.||.+||.|+|||||||+++.|..++.|++|+|.|||+|+.+-+ ...|++||+
T Consensus 2 l~v~~l~K~y~~-~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p-~~vrr~IGV 79 (245)
T COG4555 2 LEVTDLTKSYGS-KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDP-SFVRRKIGV 79 (245)
T ss_pred eeeeehhhhccC-HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccCh-HHHhhhcce
Confidence 678999999987 334899999999999999999999999999999999999999999999999998765 568999999
Q ss_pred EcccCcCCCC-cHHHhcCCCC---CCCH----HHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHH
Q 000452 1328 IPQDPVMFEG-TVRSNVDPLE---EYTD----EQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVL 1399 (1495)
Q Consensus 1328 IpQdp~LF~G-TIR~NLdp~~---~~sd----~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAL 1399 (1495)
++-+.-|+.. |.||||..|+ +.++ .++.+.-+..+|.+...+ .+ .+||-|+||+++|||||
T Consensus 80 l~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~r-------Rv----~~~S~G~kqkV~iARAl 148 (245)
T COG4555 80 LFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDR-------RV----GEFSTGMKQKVAIARAL 148 (245)
T ss_pred ecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHH-------HH----hhhchhhHHHHHHHHHH
Confidence 9977667655 9999998654 3333 345555666666665443 33 35899999999999999
Q ss_pred ccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcC-CcEEEEEecCchhhh-ccCEEEEEeCcEEEEecChhHHhhcC
Q 000452 1400 LKRRKILMLDEATASVDTATDNLIQQSLRQHFS-DCTVITIAHRITSVI-DSDMVLLLSHGLIEEYDSPRKLLENK 1473 (1495)
Q Consensus 1400 Lr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~-~~TVI~IAHRl~ti~-~~DrIlVL~~G~ivE~gsp~~Ll~~~ 1473 (1495)
.++|+|+|||||||+||.-|...+++.|++... +++||.-+|-++.+. -||+|+++.+|+++..|+++++.++.
T Consensus 149 vh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r~ 224 (245)
T COG4555 149 VHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDART 224 (245)
T ss_pred hcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHHH
Confidence 999999999999999999999999999998765 899999999999998 69999999999999999999998653
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=337.05 Aligned_cols=199 Identities=31% Similarity=0.463 Sum_probs=167.7
Q ss_pred EEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcC---------------e
Q 000452 618 IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG---------------T 682 (1495)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g---------------~ 682 (1495)
++++|+++.|+ ++++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .
T Consensus 2 l~~~~l~~~~~---~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 2 IEFKNVSKHFG---PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred EEEEeEEEEEC---CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence 68899999995 25799999999999999999999999999999999999999999999987 2
Q ss_pred EEEEccCCcccC-ccHHHHHhcCCC----CCH----HHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHH
Q 000452 683 KAYVAQSPWIQS-GKIEDNILFGKE----MDR----ERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQI 753 (1495)
Q Consensus 683 ~ayv~Q~~~l~~-~ti~enI~fg~~----~~~----~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 753 (1495)
++|++|++.++. .|++||+.++.. .+. ++..++++..++++. ...+..+||||||||++|
T Consensus 79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G~~qrv~l 147 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAER-----------AHHYPSELSGGQQQRVAI 147 (240)
T ss_pred eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHH-----------HhcChhhcCHHHHHHHHH
Confidence 589999998775 699999987531 222 233445555554332 345678999999999999
Q ss_pred HHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCcccc-CCEEEEEeCCEEEEecChHHHHhc
Q 000452 754 ARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL-NSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYTDVINS 831 (1495)
Q Consensus 754 ARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 831 (1495)
|||++.+|++++|||||++||+++.+.+.+ ++.... +++|+|++||+++++.. ||++++|++|++++.|+++++.+.
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (240)
T PRK09493 148 ARALAVKPKLMLFDEPTSALDPELRHEVLK-VMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226 (240)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence 999999999999999999999999888876 454443 58999999999999875 999999999999999999887643
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-36 Score=344.63 Aligned_cols=198 Identities=31% Similarity=0.437 Sum_probs=165.8
Q ss_pred EEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcC-----------------
Q 000452 619 EIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG----------------- 681 (1495)
Q Consensus 619 ~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g----------------- 681 (1495)
.++|+++.|+ ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 26 ~~~~~~~~~~---~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~ 102 (269)
T cd03294 26 SKEEILKKTG---QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK 102 (269)
T ss_pred hhhhhhhhcC---CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcC
Confidence 3456777774 35689999999999999999999999999999999999999999999876
Q ss_pred eEEEEccCCccc-CccHHHHHhcCCC---CC----HHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHH
Q 000452 682 TKAYVAQSPWIQ-SGKIEDNILFGKE---MD----RERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQI 753 (1495)
Q Consensus 682 ~~ayv~Q~~~l~-~~ti~enI~fg~~---~~----~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 753 (1495)
.++|++|++.++ +.|++||+.++.. .+ +++..++++.++|.+.+ .....+||||||||++|
T Consensus 103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~Gq~qrv~l 171 (269)
T cd03294 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWE-----------HKYPDELSGGMQQRVGL 171 (269)
T ss_pred cEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHh-----------hCCcccCCHHHHHHHHH
Confidence 268999999887 4699999987531 22 23455666666665444 35567999999999999
Q ss_pred HHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHH-h-CCCEEEEEecCCCcccc-CCEEEEEeCCEEEEecChHHHHh
Q 000452 754 ARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL-L-NSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYTDVIN 830 (1495)
Q Consensus 754 ARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~-~~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 830 (1495)
|||++.+|+++||||||++||+.+.+.+.+. +... . .|+|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 172 Aral~~~p~illLDEPt~~LD~~~~~~l~~~-l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 250 (269)
T cd03294 172 ARALAVDPDILLMDEAFSALDPLIRREMQDE-LLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILT 250 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999998888754 4443 2 37999999999998765 99999999999999999988865
Q ss_pred c
Q 000452 831 S 831 (1495)
Q Consensus 831 ~ 831 (1495)
.
T Consensus 251 ~ 251 (269)
T cd03294 251 N 251 (269)
T ss_pred C
Confidence 3
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=338.44 Aligned_cols=206 Identities=22% Similarity=0.318 Sum_probs=176.3
Q ss_pred EEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccEE
Q 000452 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSI 1327 (1495)
Q Consensus 1248 I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~isi 1327 (1495)
++++||+++ .+|+|+||+|++||++||+|++|||||||+++|.|+++ .+|+|.+||.++...+...+|+.++|
T Consensus 1 ~~~~~l~~~------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i~~ 73 (248)
T PRK03695 1 MQLNDVAVS------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAY 73 (248)
T ss_pred Ccccccchh------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhhheEE
Confidence 356788875 28999999999999999999999999999999999986 49999999999998888888889999
Q ss_pred EcccCc-CCCCcHHHhcCCCCC--CC----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHc
Q 000452 1328 IPQDPV-MFEGTVRSNVDPLEE--YT----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLL 1400 (1495)
Q Consensus 1328 IpQdp~-LF~GTIR~NLdp~~~--~s----d~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALL 1400 (1495)
+||+|. .+..|+++|+..... .+ ++++.++++..++.+...+ ....||+|||||++|||||+
T Consensus 74 v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~la~al~ 142 (248)
T PRK03695 74 LSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGR-----------SVNQLSGGEWQRVRLAAVVL 142 (248)
T ss_pred ecccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcC-----------CcccCCHHHHHHHHHHHHHh
Confidence 999985 456799999974321 11 3356777888777544322 34579999999999999999
Q ss_pred c-------CCCeEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhh-ccCEEEEEeCcEEEEecChhHHhh
Q 000452 1401 K-------RRKILMLDEATASVDTATDNLIQQSLRQHF-SDCTVITIAHRITSVI-DSDMVLLLSHGLIEEYDSPRKLLE 1471 (1495)
Q Consensus 1401 r-------~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f-~~~TVI~IAHRl~ti~-~~DrIlVL~~G~ivE~gsp~~Ll~ 1471 (1495)
+ +|++|||||||++||+.+...+.+.|++.. +++|||+|+|+++.+. .||+|++|++|++++.|+++++.+
T Consensus 143 ~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 222 (248)
T PRK03695 143 QVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLT 222 (248)
T ss_pred ccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhC
Confidence 7 679999999999999999999999998875 4789999999999765 599999999999999999999874
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=333.22 Aligned_cols=194 Identities=22% Similarity=0.317 Sum_probs=161.7
Q ss_pred EEEEeeEEEecCCC-CCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe------------EE
Q 000452 618 IEIADGNFSWDISS-HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------KA 684 (1495)
Q Consensus 618 i~~~~~~~~~~~~~-~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~------------~a 684 (1495)
++++|++++|+... ..++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|. ++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~ 81 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLG 81 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEE
Confidence 67899999996321 126999999999999999999999999999999999999999999999872 68
Q ss_pred EEccCCcccC-ccHHHHHhcCCC---CC----HHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHHHHH
Q 000452 685 YVAQSPWIQS-GKIEDNILFGKE---MD----RERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARA 756 (1495)
Q Consensus 685 yv~Q~~~l~~-~ti~enI~fg~~---~~----~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARA 756 (1495)
|++|++.++. .|++||+.+... .+ .++..+.++..++.+. ..+++.+||||||||++||||
T Consensus 82 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~lara 150 (218)
T cd03266 82 FVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEEL-----------LDRRVGGFSTGMRQKVAIARA 150 (218)
T ss_pred EecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH-----------HhhhhhhcCHHHHHHHHHHHH
Confidence 9999998877 499999976421 11 2344555666665433 346778999999999999999
Q ss_pred hccCCCEeEecCcCCccCHHHHHHHHHHHHHHH-hCCCEEEEEecCCCcccc-CCEEEEEeCCEEEEec
Q 000452 757 LYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL-LNSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAG 823 (1495)
Q Consensus 757 l~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~~~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~~~g 823 (1495)
++.+|+++||||||++||+.+.+.+.+. +... .+++|+|++||+++++.. ||++++|++|++.+.|
T Consensus 151 l~~~p~illlDEPt~~LD~~~~~~l~~~-l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 151 LVHDPPVLLLDEPTTGLDVMATRALREF-IRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HhcCCCEEEEcCCCcCCCHHHHHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 9999999999999999999998888764 4443 358999999999998765 9999999999998654
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=344.29 Aligned_cols=201 Identities=27% Similarity=0.417 Sum_probs=173.3
Q ss_pred cEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcC------------eEE
Q 000452 617 AIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG------------TKA 684 (1495)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g------------~~a 684 (1495)
.++++|++..|.. ++.+|+||||++++|+++|++||||||||||+++|+|+++|++|+|.++| ++|
T Consensus 4 ~i~~~~l~k~~~~--~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~ig 81 (293)
T COG1131 4 VIEVRNLTKKYGG--DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIG 81 (293)
T ss_pred eeeecceEEEeCC--CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheE
Confidence 4788999999952 36799999999999999999999999999999999999999999999998 379
Q ss_pred EEccCCccc-CccHHHHHhcCC-----C--CCHHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHHHHH
Q 000452 685 YVAQSPWIQ-SGKIEDNILFGK-----E--MDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARA 756 (1495)
Q Consensus 685 yv~Q~~~l~-~~ti~enI~fg~-----~--~~~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARA 756 (1495)
|+||+|.++ ..|++||+.|.. + .++++.+++++..+|.++. +.+..+||||||||++||+|
T Consensus 82 y~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~lS~G~kqrl~ia~a 150 (293)
T COG1131 82 YVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-----------NKKVRTLSGGMKQRLSIALA 150 (293)
T ss_pred EEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-----------CcchhhcCHHHHHHHHHHHH
Confidence 999999865 569999998732 1 2356777888877776521 36678999999999999999
Q ss_pred hccCCCEeEecCcCCccCHHHHHHHHHHHHHHHhCC-CEEEEEecCCCcccc-CCEEEEEeCCEEEEecChHHHHh
Q 000452 757 LYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNS-KTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYTDVIN 830 (1495)
Q Consensus 757 l~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~-~tvIlvTH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 830 (1495)
|.++|+++||||||+||||..+..+++.+.....++ +||+++||.++.+.. ||+|++|++|+++..|+.+++..
T Consensus 151 L~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~ 226 (293)
T COG1131 151 LLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKE 226 (293)
T ss_pred HhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 999999999999999999999888875433334445 799999999999876 99999999999999999988754
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=331.26 Aligned_cols=192 Identities=26% Similarity=0.402 Sum_probs=160.5
Q ss_pred EEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcC---------eEEEEcc
Q 000452 618 IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG---------TKAYVAQ 688 (1495)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g---------~~ayv~Q 688 (1495)
++++|+++.|+ ++++++|+||++++|++++|+||||||||||+++|+|+++|++|+|.++| .++|++|
T Consensus 1 l~~~~l~~~~~---~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q 77 (210)
T cd03269 1 LEVENVTKRFG---RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPE 77 (210)
T ss_pred CEEEEEEEEEC---CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEecc
Confidence 46899999995 35799999999999999999999999999999999999999999999987 3799999
Q ss_pred CCcccC-ccHHHHHhcCCC---CC----HHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHHHHHhccC
Q 000452 689 SPWIQS-GKIEDNILFGKE---MD----RERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQD 760 (1495)
Q Consensus 689 ~~~l~~-~ti~enI~fg~~---~~----~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~ 760 (1495)
++.++. .|++||+.++.. .. +++..+.++..++.... .+...+||||||||++||||++.+
T Consensus 78 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~la~al~~~ 146 (210)
T cd03269 78 ERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYA-----------NKRVEELSKGNQQKVQFIAAVIHD 146 (210)
T ss_pred CCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHH-----------hCcHhhCCHHHHHHHHHHHHHhcC
Confidence 998876 599999976431 11 23344555555554333 356789999999999999999999
Q ss_pred CCEeEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEecCCCcccc-CCEEEEEeCCEEEEec
Q 000452 761 ADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAG 823 (1495)
Q Consensus 761 ~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~~~g 823 (1495)
|+++||||||++||+.+.+.+.+.+.....+++|+|++||+++.+.. ||++++|++|++.+.|
T Consensus 147 p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 147 PELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999888876443323357899999999998865 9999999999998654
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-32 Score=330.11 Aligned_cols=445 Identities=18% Similarity=0.193 Sum_probs=312.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhcCCC-----HHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHH
Q 000452 360 RFFVFRLEQLGIRLRAALIAMIYNKGLKLSSQAKQGNT-----SGEIINFMTVDAERVAELSWYI-HDPWLFLFEVALSF 433 (1495)
Q Consensus 360 ~~~~~~~~~~g~rir~~L~~~iy~K~L~ls~~~~~~~~-----~G~i~nl~s~D~~~i~~~~~~~-~~~w~~pl~i~~~~ 433 (1495)
....|..+++..+.|.-|...+.+|=|.-....+-... .-..=+++..|+..+.+....+ ..+....++++.-.
T Consensus 104 v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~~l~~g~l~s~islisF~ 183 (604)
T COG4178 104 VAQTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLAQAGGIGLIDNPDQRIQEDIRNFTETTLDLSFGLLQSVISLISFT 183 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhcccccCCCChHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 34566778899999999999999998887654432211 1224468888888877654433 33444555666666
Q ss_pred HHHHHHHHHHH---------HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhHHHHHHhc
Q 000452 434 LILYKSLGIAS---------VAA--FFGTVIFMLVNVPLSTVQEKFQNELMK-----SKDERMKATSEILRNMRILKLQG 497 (1495)
Q Consensus 434 ~lL~~~lG~~~---------l~g--l~~~i~~~~~~~~~~~~~~~~~~~~m~-----~~D~R~~~~~E~L~~ir~IK~~~ 497 (1495)
.+||...|..+ +.| +.++++..++...++-+..+.-.++.- .-|-|- ....+.++...|-+|+
T Consensus 184 ~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~-~Lvrv~enaE~IAly~ 262 (604)
T COG4178 184 GILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRY-SLVRVRENAEAIALYR 262 (604)
T ss_pred HHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHH-HHHHHHhhHHHHHHhc
Confidence 67886555221 111 122233333333333232222222222 223333 3447788889999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHH
Q 000452 498 WELKFLSKTIDLRKSESGWLKRCL----YTSSITSFVFWCAPTFVSVITFGTCILLKVPLESGKVLSAIATFRLLQILIY 573 (1495)
Q Consensus 498 wE~~f~~~i~~~R~~E~~~l~~~~----~~~~~~~~~~~~~p~~v~~~~f~~~~~~~~~L~~~~vft~lalf~~l~~pl~ 573 (1495)
-|+.-.+++.+.-..=++..++.. .+..+.....++++++-.++ .+-.+..+.++-|.+..+-..|+.+...+.
T Consensus 263 GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li--~ap~~f~g~i~~G~lmqa~~aF~~v~ssls 340 (604)
T COG4178 263 GEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILI--AAPRYFSGQITFGGLMQAVGAFGQVHSSLS 340 (604)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHh--ccHhhhcCcChHHHHHHHHHHHHHHHHHHH
Confidence 998766666543322222111111 11111112222222111111 112245778999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCC--CCcccccCCCC------CCCcccEEEEeeEEEecCCCCCCccccceEEeeC
Q 000452 574 KLPAIISMTIQTKVSLQRIASFFCLDE--LQPDLVEKQPR------GSSETAIEIADGNFSWDISSHNPTLKDINLKVFH 645 (1495)
Q Consensus 574 ~lp~~i~~~~~a~vs~~RI~~fL~~~e--~~~~~~~~~~~------~~~~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~ 645 (1495)
.+-+.+..+.+-++++.|+.+|-..-| ..++.....+. +..+..|.++|++..-+. .++.+++.||++++
T Consensus 341 wfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~--~~~ll~~l~~~v~~ 418 (604)
T COG4178 341 WFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPD--GQTLLSELNFEVRP 418 (604)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeEEeeeeEECCC--CCeeeccceeeeCC
Confidence 999999999999999999999985322 00110000000 111467999999998763 35899999999999
Q ss_pred CcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcC--eEEEEccCCcccCccHHHHHhcCCC---CCHHHHHHHHHHhC
Q 000452 646 GMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG--TKAYVAQSPWIQSGKIEDNILFGKE---MDRERYNAVLDACS 720 (1495)
Q Consensus 646 G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g--~~ayv~Q~~~l~~~ti~enI~fg~~---~~~~~~~~vl~~~~ 720 (1495)
|+.+.|.||||||||||+++|.|+.|--+|+|.... ..-|+||.|.+..||.||-|++... ++++.+.+++..|+
T Consensus 419 G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vg 498 (604)
T COG4178 419 GERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVG 498 (604)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHHHHcC
Confidence 999999999999999999999999999999998873 3689999999999999999999753 77899999999999
Q ss_pred cHHHHhhcCCCCcccccCCCCccchHHHHHHHHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEec
Q 000452 721 LEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTH 800 (1495)
Q Consensus 721 l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH 800 (1495)
|.+-.+.+..-+. =...||||||||+++||.++++|++++|||.|||||+.++..+++ .++..+.+.|+|-|.|
T Consensus 499 L~~L~~rl~~~~~-----W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q-~l~~~lp~~tvISV~H 572 (604)
T COG4178 499 LGDLAERLDEEDR-----WDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQ-LLKEELPDATVISVGH 572 (604)
T ss_pred cHHHHHHHhccCc-----HhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHH-HHHhhCCCCEEEEecc
Confidence 9998888765544 346899999999999999999999999999999999999988885 4666778999999999
Q ss_pred CCCccccCCEEEEEe
Q 000452 801 QVEFLPAADLVLVIK 815 (1495)
Q Consensus 801 ~~~~l~~~d~i~~l~ 815 (1495)
+.......++.+.+.
T Consensus 573 r~tl~~~h~~~l~l~ 587 (604)
T COG4178 573 RPTLWNFHSRQLELL 587 (604)
T ss_pred chhhHHHHhhheeec
Confidence 988776666655554
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=331.77 Aligned_cols=190 Identities=24% Similarity=0.391 Sum_probs=161.1
Q ss_pred EEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcC------------eEEE
Q 000452 618 IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG------------TKAY 685 (1495)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g------------~~ay 685 (1495)
++++|+++.|+ ++++++|+||++++| +++|+||||||||||+++|+|+++|++|+|.++| .++|
T Consensus 1 i~~~~~~~~~~---~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 76 (211)
T cd03264 1 LQLENLTKRYG---KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGY 76 (211)
T ss_pred CEEEEEEEEEC---CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEE
Confidence 46899999995 247999999999999 9999999999999999999999999999999987 2689
Q ss_pred EccCCcccCc-cHHHHHhcCCC---CC----HHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHHHHHh
Q 000452 686 VAQSPWIQSG-KIEDNILFGKE---MD----RERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARAL 757 (1495)
Q Consensus 686 v~Q~~~l~~~-ti~enI~fg~~---~~----~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl 757 (1495)
++|++.++.. |++||+.+... .+ +++.+++++.+++.+..+ ....+||||||||++||||+
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~al 145 (211)
T cd03264 77 LPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAK-----------KKIGSLSGGMRRRVGIAQAL 145 (211)
T ss_pred ecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHh-----------CchhhCCHHHHHHHHHHHHH
Confidence 9999988765 99999986421 11 234556677776654332 45678999999999999999
Q ss_pred ccCCCEeEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEecCCCcccc-CCEEEEEeCCEEEEec
Q 000452 758 YQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAG 823 (1495)
Q Consensus 758 ~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~~~g 823 (1495)
+++|+++||||||++||+.+.+.+.+ .+....+++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 146 VGDPSILIVDEPTAGLDPEERIRFRN-LLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999888875 45555557999999999999865 9999999999998754
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=337.55 Aligned_cols=202 Identities=28% Similarity=0.423 Sum_probs=166.1
Q ss_pred EEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe-------------EE
Q 000452 618 IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------KA 684 (1495)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~-------------~a 684 (1495)
++++|++++|+.. +++|+|+||++++|++++|+||||||||||+++|+|+.+|++|+|.++|. ++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (242)
T cd03295 1 IEFENVTKRYGGG--KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG 78 (242)
T ss_pred CEEEEEEEEeCCc--ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE
Confidence 4689999999631 56999999999999999999999999999999999999999999999873 58
Q ss_pred EEccCCcccC-ccHHHHHhcCCC---CCH----HHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHHHHH
Q 000452 685 YVAQSPWIQS-GKIEDNILFGKE---MDR----ERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARA 756 (1495)
Q Consensus 685 yv~Q~~~l~~-~ti~enI~fg~~---~~~----~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARA 756 (1495)
|++|+|.++. .|++||+.++.. .+. ++..++++..++.+ .....+.+.+||||||||++||||
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~---------~~~~~~~~~~LS~G~~qrv~lara 149 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDP---------AEFADRYPHELSGGQQQRVGVARA 149 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCc---------HHHHhcChhhCCHHHHHHHHHHHH
Confidence 9999998885 699999987532 221 23344444444432 012346778999999999999999
Q ss_pred hccCCCEeEecCcCCccCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCcccc-CCEEEEEeCCEEEEecChHHHHh
Q 000452 757 LYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL-NSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYTDVIN 830 (1495)
Q Consensus 757 l~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 830 (1495)
++.+|+++||||||++||+.+.+.+.+.+..... .++|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 150 l~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 225 (242)
T cd03295 150 LAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILR 225 (242)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHc
Confidence 9999999999999999999998877754433333 38999999999998765 99999999999999999888754
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=342.07 Aligned_cols=201 Identities=25% Similarity=0.362 Sum_probs=168.3
Q ss_pred ccEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe-------------
Q 000452 616 TAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------- 682 (1495)
Q Consensus 616 ~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~------------- 682 (1495)
..++++|++++|+ ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 6 ~~l~~~~l~~~~~---~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (269)
T PRK11831 6 NLVDMRGVSFTRG---NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTV 82 (269)
T ss_pred ceEEEeCeEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHH
Confidence 3689999999995 357999999999999999999999999999999999999999999998862
Q ss_pred ---EEEEccCCcccCc-cHHHHHhcCC----CCCH----HHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHH
Q 000452 683 ---KAYVAQSPWIQSG-KIEDNILFGK----EMDR----ERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQR 750 (1495)
Q Consensus 683 ---~ayv~Q~~~l~~~-ti~enI~fg~----~~~~----~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqR 750 (1495)
++|++|++.++.. |++||+.++. ..+. ++..+.++.+++.+. ...+..+||||||||
T Consensus 83 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgGq~qr 151 (269)
T PRK11831 83 RKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGA-----------AKLMPSELSGGMARR 151 (269)
T ss_pred hhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhh-----------hhCChhhCCHHHHHH
Confidence 6899999988865 9999998642 1222 223344555554322 235678999999999
Q ss_pred HHHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHH-hC-CCEEEEEecCCCcccc-CCEEEEEeCCEEEEecChHH
Q 000452 751 IQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL-LN-SKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYTD 827 (1495)
Q Consensus 751 v~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~~-~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 827 (1495)
++||||++.+|+++||||||++||+.+.+.+.+ ++... .+ ++|+|++||+++.+.. ||++++|++|++++.|++++
T Consensus 152 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 230 (269)
T PRK11831 152 AALARAIALEPDLIMFDEPFVGQDPITMGVLVK-LISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQA 230 (269)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHH-HHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999888875 44443 33 7899999999998865 99999999999999999999
Q ss_pred HHhc
Q 000452 828 VINS 831 (1495)
Q Consensus 828 l~~~ 831 (1495)
+.+.
T Consensus 231 ~~~~ 234 (269)
T PRK11831 231 LQAN 234 (269)
T ss_pred HhcC
Confidence 8754
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=339.33 Aligned_cols=205 Identities=29% Similarity=0.421 Sum_probs=171.9
Q ss_pred ccEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCC-----CCCcEEEEcC---------
Q 000452 616 TAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVP-----KISGTLKLCG--------- 681 (1495)
Q Consensus 616 ~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~-----~~~G~v~~~g--------- 681 (1495)
..++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|.++ |++|+|.++|
T Consensus 12 ~~l~~~~l~~~~~---~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~ 88 (260)
T PRK10744 12 SKIQVRNLNFYYG---KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88 (260)
T ss_pred ceEEEEEEEEEeC---CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccc
Confidence 4689999999995 2479999999999999999999999999999999999986 5899999876
Q ss_pred ------eEEEEccCCcccCccHHHHHhcCCC----CCH----HHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHH
Q 000452 682 ------TKAYVAQSPWIQSGKIEDNILFGKE----MDR----ERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQ 747 (1495)
Q Consensus 682 ------~~ayv~Q~~~l~~~ti~enI~fg~~----~~~----~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQ 747 (1495)
.++|++|++.++..|++||+.++.. .+. ++.+++++..++.+++. ...++...+|||||
T Consensus 89 ~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq 161 (260)
T PRK10744 89 IALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVK-------DKLHQSGYSLSGGQ 161 (260)
T ss_pred hHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhH-------HHHhcCCCCCCHHH
Confidence 2689999999888999999987632 222 33455566665533322 23457788999999
Q ss_pred HHHHHHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEecCCCcccc-CCEEEEEeCCEEEEecChH
Q 000452 748 KQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYT 826 (1495)
Q Consensus 748 kqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 826 (1495)
|||++||||++.+|+++||||||++||+.+.+.+.+ .+....+++|+|++||+++.+.. ||++++|++|++++.|+.+
T Consensus 162 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 240 (260)
T PRK10744 162 QQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEE-LITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTD 240 (260)
T ss_pred HHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHH-HHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999888765 45555567899999999998865 9999999999999999998
Q ss_pred HHHhc
Q 000452 827 DVINS 831 (1495)
Q Consensus 827 ~l~~~ 831 (1495)
++.+.
T Consensus 241 ~~~~~ 245 (260)
T PRK10744 241 TIFTK 245 (260)
T ss_pred HHHhC
Confidence 88653
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=340.88 Aligned_cols=203 Identities=31% Similarity=0.457 Sum_probs=170.5
Q ss_pred ccEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe-------------
Q 000452 616 TAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------- 682 (1495)
Q Consensus 616 ~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~------------- 682 (1495)
..++++|++++|+. +++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 6 ~~l~~~nl~~~~~~-~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 84 (271)
T PRK13632 6 VMIKVENVSFSYPN-SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKK 84 (271)
T ss_pred eEEEEEeEEEEcCC-CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcc
Confidence 36899999999952 2357999999999999999999999999999999999999999999999872
Q ss_pred EEEEccCCc--ccCccHHHHHhcCCC---CCHH----HHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHH
Q 000452 683 KAYVAQSPW--IQSGKIEDNILFGKE---MDRE----RYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQI 753 (1495)
Q Consensus 683 ~ayv~Q~~~--l~~~ti~enI~fg~~---~~~~----~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 753 (1495)
++|++|+|. +++.|++||+.++.. ++.+ +.+++++..++.+.+ .+...+||||||||++|
T Consensus 85 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~l 153 (271)
T PRK13632 85 IGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYL-----------DKEPQNLSGGQKQRVAI 153 (271)
T ss_pred eEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHh-----------hCCcccCCHHHHHHHHH
Confidence 589999984 557899999987532 3332 345556666665443 35678999999999999
Q ss_pred HHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCccccCCEEEEEeCCEEEEecChHHHHh
Q 000452 754 ARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLN-SKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVIN 830 (1495)
Q Consensus 754 ARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvIlvTH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~ 830 (1495)
|||++.+|+++||||||++||+.+.+.+++.+.....+ ++|+|++||+++.+..||++++|++|++.+.|+.+++..
T Consensus 154 aral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 231 (271)
T PRK13632 154 ASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILN 231 (271)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhc
Confidence 99999999999999999999999988887644333334 589999999999887899999999999999999888754
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=326.20 Aligned_cols=206 Identities=29% Similarity=0.401 Sum_probs=174.5
Q ss_pred cEEEEeeEEEecCCC---------------------CCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCc
Q 000452 617 AIEIADGNFSWDISS---------------------HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISG 675 (1495)
Q Consensus 617 ~i~~~~~~~~~~~~~---------------------~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G 675 (1495)
.|+++|+.+-+.... ...-++|+||+++.||+.+|.|-+|||||||++++.++++|++|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 577888877775321 01247899999999999999999999999999999999999999
Q ss_pred EEEEcCe-----------------EEEEccCCccc-CccHHHHHhcCCCCC-------HHHHHHHHHHhCcHHHHhhcCC
Q 000452 676 TLKLCGT-----------------KAYVAQSPWIQ-SGKIEDNILFGKEMD-------RERYNAVLDACSLEKDLEILSF 730 (1495)
Q Consensus 676 ~v~~~g~-----------------~ayv~Q~~~l~-~~ti~enI~fg~~~~-------~~~~~~vl~~~~l~~dl~~l~~ 730 (1495)
+|.++|. ++.|+|+.-++ ..||.||+.||.+.. +++..+.++..+|+..-+
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~---- 159 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYAD---- 159 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhh----
Confidence 9999984 48999997764 679999999997642 345556677777765443
Q ss_pred CCcccccCCCCccchHHHHHHHHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCcc-ccC
Q 000452 731 GDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLN-SKTVLYVTHQVEFL-PAA 808 (1495)
Q Consensus 731 gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvIlvTH~~~~l-~~~ 808 (1495)
..+.+||||+||||.|||||..||||+|+|||||||||--..++-++++....+ +||+|+||||+++. ...
T Consensus 160 -------~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG 232 (386)
T COG4175 160 -------KYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIG 232 (386)
T ss_pred -------cCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhcc
Confidence 556899999999999999999999999999999999999998888877654333 79999999999985 569
Q ss_pred CEEEEEeCCEEEEecChHHHHhcCC
Q 000452 809 DLVLVIKDGKITQAGKYTDVINSGT 833 (1495)
Q Consensus 809 d~i~~l~~G~i~~~g~~~~l~~~~~ 833 (1495)
|||.+|+||+|++.|+++|++.+..
T Consensus 233 ~rIaimkdG~ivQ~Gtp~eIl~~PA 257 (386)
T COG4175 233 DRIAIMKDGEIVQVGTPEEILLNPA 257 (386)
T ss_pred ceEEEecCCeEEEeCCHHHHHcCcc
Confidence 9999999999999999999987643
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-35 Score=335.49 Aligned_cols=211 Identities=19% Similarity=0.255 Sum_probs=169.5
Q ss_pred EEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccc--cCCccEEEEcCEeCCCCCHHHHh-cc
Q 000452 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIV--EPAAGQILIDGIDISLIGLHDLR-TR 1324 (1495)
Q Consensus 1248 I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~--ep~~G~I~IDG~dI~~i~l~~LR-~~ 1324 (1495)
|+++|++++|+. .++|+|+||+|++||++||+|++|||||||+++|.|++ +|++|+|.+||.++...+....+ ..
T Consensus 2 i~~~nl~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (248)
T PRK09580 2 LSIKDLHVSVED--KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEG 79 (248)
T ss_pred eEEEEEEEEeCC--eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcc
Confidence 789999999964 35999999999999999999999999999999999995 69999999999999888766654 57
Q ss_pred cEEEcccCcCCCC-cHHHhcC-------CCCC---CC----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchH
Q 000452 1325 LSIIPQDPVMFEG-TVRSNVD-------PLEE---YT----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQ 1389 (1495)
Q Consensus 1325 isiIpQdp~LF~G-TIR~NLd-------p~~~---~s----d~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQ 1389 (1495)
++|+||+|.++.. |..+|+. .... .. ++.+.+.++..++ |+++.+... ..+||+||
T Consensus 80 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~~~--~~~LS~G~ 150 (248)
T PRK09580 80 IFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKM-------PEDLLTRSV--NVGFSGGE 150 (248)
T ss_pred eEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCC-------ChhhcccCC--CCCCCHHH
Confidence 9999999987765 4444432 1110 01 1122333444333 222222111 13699999
Q ss_pred HHHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcC-CcEEEEEecCchhhhc--cCEEEEEeCcEEEEecCh
Q 000452 1390 RQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFS-DCTVITIAHRITSVID--SDMVLLLSHGLIEEYDSP 1466 (1495)
Q Consensus 1390 rQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~-~~TVI~IAHRl~ti~~--~DrIlVL~~G~ivE~gsp 1466 (1495)
|||++||||++++|+||+|||||++||.++...+.+.|++..+ ++|||+|+|+++.+.. ||+|++|++|++++.|++
T Consensus 151 ~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~ 230 (248)
T PRK09580 151 KKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDF 230 (248)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCH
Confidence 9999999999999999999999999999999999999987653 6899999999999987 899999999999999998
Q ss_pred hHH
Q 000452 1467 RKL 1469 (1495)
Q Consensus 1467 ~~L 1469 (1495)
+..
T Consensus 231 ~~~ 233 (248)
T PRK09580 231 TLV 233 (248)
T ss_pred HHH
Confidence 854
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=344.11 Aligned_cols=203 Identities=25% Similarity=0.431 Sum_probs=167.7
Q ss_pred cEEEEeeEEEecCCC--CCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe------------
Q 000452 617 AIEIADGNFSWDISS--HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------ 682 (1495)
Q Consensus 617 ~i~~~~~~~~~~~~~--~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~------------ 682 (1495)
.++++|++++|+... .+++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIK 81 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHH
Confidence 378999999996321 146999999999999999999999999999999999999999999999872
Q ss_pred -----EEEEccCC--cccCccHHHHHhcCCC---CCHH----HHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHH
Q 000452 683 -----KAYVAQSP--WIQSGKIEDNILFGKE---MDRE----RYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQK 748 (1495)
Q Consensus 683 -----~ayv~Q~~--~l~~~ti~enI~fg~~---~~~~----~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 748 (1495)
++|++|++ .+++.|++||+.++.. .+.+ +.+++++..++.++ ....+..+||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgG~~ 151 (280)
T PRK13649 82 QIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISES----------LFEKNPFELSGGQM 151 (280)
T ss_pred HHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChh----------hhhCCcccCCHHHH
Confidence 58999998 5778899999987532 2222 23344444444321 12467789999999
Q ss_pred HHHHHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHH-hCCCEEEEEecCCCcccc-CCEEEEEeCCEEEEecChH
Q 000452 749 QRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL-LNSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYT 826 (1495)
Q Consensus 749 qRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~~~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 826 (1495)
||++||||++.+|+++||||||++||+.+.+.+.+. +... .+++|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus 152 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 230 (280)
T PRK13649 152 RRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTL-FKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPK 230 (280)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999998888764 4443 348999999999998865 9999999999999999998
Q ss_pred HHHh
Q 000452 827 DVIN 830 (1495)
Q Consensus 827 ~l~~ 830 (1495)
++..
T Consensus 231 ~~~~ 234 (280)
T PRK13649 231 DIFQ 234 (280)
T ss_pred HHhc
Confidence 8754
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=336.38 Aligned_cols=191 Identities=23% Similarity=0.333 Sum_probs=160.5
Q ss_pred CcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccEEEc-ccCcCC-CCcH
Q 000452 1262 PFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSIIP-QDPVMF-EGTV 1339 (1495)
Q Consensus 1262 ~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~isiIp-Qdp~LF-~GTI 1339 (1495)
.++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++.... ..+|++++|+| |++.+| .-|+
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~-~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRR-KKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccc-hhhcccEEEEcCCccccCCCCcH
Confidence 45999999999999999999999999999999999999999999999999876533 46788999998 667776 4599
Q ss_pred HHhcCCC---CCCCHH----HHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCeEEEEcCC
Q 000452 1340 RSNVDPL---EEYTDE----QIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEAT 1412 (1495)
Q Consensus 1340 R~NLdp~---~~~sd~----ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALLr~~~ILiLDEaT 1412 (1495)
++|+... ...+++ ++.++++..++.+.. |+. ...||+|||||++|||||+.+|+||||||||
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-------~~~----~~~LS~G~~qrl~la~al~~~p~llllDEPt 181 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKRLDELSELLDLEELL-------DTP----VRQLSLGQRMRAEIAAALLHEPEILFLDEPT 181 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHh-------cCC----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 9998532 122332 345566666664332 333 3469999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcC--CcEEEEEecCchhhhc-cCEEEEEeCcEEEEec
Q 000452 1413 ASVDTATDNLIQQSLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGLIEEYD 1464 (1495)
Q Consensus 1413 sslD~~Td~~Iq~~Ir~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~g 1464 (1495)
++||+++...+.+.|++..+ ++|||+++|+++.+.. ||+|++|++|++++.|
T Consensus 182 ~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 182 IGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999998643 6899999999998865 9999999999998765
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=352.91 Aligned_cols=188 Identities=30% Similarity=0.447 Sum_probs=161.5
Q ss_pred CCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcC---------------------eEEEEccCCc
Q 000452 633 NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG---------------------TKAYVAQSPW 691 (1495)
Q Consensus 633 ~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g---------------------~~ayv~Q~~~ 691 (1495)
..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++| .++||+|++.
T Consensus 37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~ 116 (382)
T TIGR03415 37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA 116 (382)
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCc
Confidence 4689999999999999999999999999999999999999999999987 2699999999
Q ss_pred ccC-ccHHHHHhcCCC---CC----HHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHHHHHhccCCCE
Q 000452 692 IQS-GKIEDNILFGKE---MD----RERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADI 763 (1495)
Q Consensus 692 l~~-~ti~enI~fg~~---~~----~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~i 763 (1495)
+++ .|++||+.++.. .+ +++..+.++..+|.+.. .....+|||||||||+|||||+++|+|
T Consensus 117 l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~-----------~~~~~~LSgGq~QRV~LARALa~~P~I 185 (382)
T TIGR03415 117 LMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWA-----------DKKPGELSGGMQQRVGLARAFAMDADI 185 (382)
T ss_pred CCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 986 799999998742 22 23445566666664332 356678999999999999999999999
Q ss_pred eEecCcCCccCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCccc-cCCEEEEEeCCEEEEecChHHHHhc
Q 000452 764 YLFDDPFSAVDAHTGSHLFKEVLLGLLN-SKTVLYVTHQVEFLP-AADLVLVIKDGKITQAGKYTDVINS 831 (1495)
Q Consensus 764 llLDep~saLD~~~~~~i~~~~~~~~~~-~~tvIlvTH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 831 (1495)
+|||||||+||+.+.+.+++.+.....+ ++|+|+||||++++. .||+|++|++|++++.|+++++...
T Consensus 186 LLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~ 255 (382)
T TIGR03415 186 LLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLN 255 (382)
T ss_pred EEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC
Confidence 9999999999999999988765543333 899999999999875 5999999999999999999998754
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=331.82 Aligned_cols=191 Identities=29% Similarity=0.424 Sum_probs=158.9
Q ss_pred EEEEeeEEEecCCC-CCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcC---------------
Q 000452 618 IEIADGNFSWDISS-HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG--------------- 681 (1495)
Q Consensus 618 i~~~~~~~~~~~~~-~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g--------------- 681 (1495)
++++|++++|+... .+++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 68899999996321 24699999999999999999999999999999999999999999999876
Q ss_pred --eEEEEccCCcccC-ccHHHHHhcCC---CCCH----HHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHH
Q 000452 682 --TKAYVAQSPWIQS-GKIEDNILFGK---EMDR----ERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRI 751 (1495)
Q Consensus 682 --~~ayv~Q~~~l~~-~ti~enI~fg~---~~~~----~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv 751 (1495)
.++|++|++.++. .|++||+.++. .++. ++..+.++.+++++. ....+.+||||||||+
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv 150 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHR-----------INHRPSELSGGERQRV 150 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhh-----------hhCChhhCCHHHHHHH
Confidence 2789999998874 69999998742 1222 234455555555432 2456689999999999
Q ss_pred HHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHH-h-CCCEEEEEecCCCccccCCEEEEEeCCEEE
Q 000452 752 QIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL-L-NSKTVLYVTHQVEFLPAADLVLVIKDGKIT 820 (1495)
Q Consensus 752 ~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~-~~~tvIlvTH~~~~l~~~d~i~~l~~G~i~ 820 (1495)
+||||++.+|+++||||||++||+++.+.+.+ ++... . .++|+|++||+++++..+|++++|++|+++
T Consensus 151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~-~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFD-LMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 99999999999999999999999999888875 44444 3 378999999999988779999999999975
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=326.11 Aligned_cols=194 Identities=25% Similarity=0.341 Sum_probs=168.8
Q ss_pred EEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccEE
Q 000452 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSI 1327 (1495)
Q Consensus 1248 I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~isi 1327 (1495)
++++|++++|+. ..+|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++.... ..+|++++|
T Consensus 1 l~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (201)
T cd03231 1 LEADELTCERDG--RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLLY 77 (201)
T ss_pred CEEEEEEEEeCC--ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheEE
Confidence 478999999964 35999999999999999999999999999999999999999999999999987654 567899999
Q ss_pred EcccCcCC-CCcHHHhcCCC-CCCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCe
Q 000452 1328 IPQDPVMF-EGTVRSNVDPL-EEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKI 1405 (1495)
Q Consensus 1328 IpQdp~LF-~GTIR~NLdp~-~~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALLr~~~I 1405 (1495)
+||+|.++ ..|+++|+... ...+++++.++++..++.+...+ . ..+||+|||||++||||++++|++
T Consensus 78 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~----~~~LS~G~~qrl~laral~~~p~l 146 (201)
T cd03231 78 LGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDR-------P----VAQLSAGQQRRVALARLLLSGRPL 146 (201)
T ss_pred eccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcC-------c----hhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99999876 57999999643 33467788999999998754322 2 357999999999999999999999
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchh-hhccCEEEEE
Q 000452 1406 LMLDEATASVDTATDNLIQQSLRQHF-SDCTVITIAHRITS-VIDSDMVLLL 1455 (1495)
Q Consensus 1406 LiLDEaTsslD~~Td~~Iq~~Ir~~f-~~~TVI~IAHRl~t-i~~~DrIlVL 1455 (1495)
|||||||++||+.+...+.+.|++.. .++|+|+|+|+... ...||+++++
T Consensus 147 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 147 WILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 99999999999999999999998764 47999999998665 4569999887
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=342.27 Aligned_cols=202 Identities=29% Similarity=0.434 Sum_probs=171.7
Q ss_pred ccEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCC---cEEEEcCe----------
Q 000452 616 TAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKIS---GTLKLCGT---------- 682 (1495)
Q Consensus 616 ~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~---G~v~~~g~---------- 682 (1495)
..++++|+++.|+.. .+++++|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|.
T Consensus 4 ~~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~ 82 (282)
T PRK13640 4 NIVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI 82 (282)
T ss_pred ceEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHH
Confidence 468999999999632 3469999999999999999999999999999999999999987 89999873
Q ss_pred ---EEEEccCCc--ccCccHHHHHhcCCC---CCH----HHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHH
Q 000452 683 ---KAYVAQSPW--IQSGKIEDNILFGKE---MDR----ERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQR 750 (1495)
Q Consensus 683 ---~ayv~Q~~~--l~~~ti~enI~fg~~---~~~----~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqR 750 (1495)
++|++|+|+ +++.|++|||.|+.. .+. ++..++++.++|.+.. +....+||||||||
T Consensus 83 ~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~LS~G~~qr 151 (282)
T PRK13640 83 REKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYI-----------DSEPANLSGGQKQR 151 (282)
T ss_pred HhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHh-----------cCCcccCCHHHHHH
Confidence 589999984 567899999988632 222 3355566667765433 45668999999999
Q ss_pred HHHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHH-hC-CCEEEEEecCCCccccCCEEEEEeCCEEEEecChHHH
Q 000452 751 IQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL-LN-SKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDV 828 (1495)
Q Consensus 751 v~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~~-~~tvIlvTH~~~~l~~~d~i~~l~~G~i~~~g~~~~l 828 (1495)
++||||++++|+++||||||++||+.+.+.+.+. +... .+ |+|||++||+++.+..||++++|++|++++.|+++++
T Consensus 152 v~laral~~~P~llllDEPt~gLD~~~~~~l~~~-l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 230 (282)
T PRK13640 152 VAIAGILAVEPKIIILDESTSMLDPAGKEQILKL-IRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEI 230 (282)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999998888764 4443 33 8999999999999877999999999999999999887
Q ss_pred Hh
Q 000452 829 IN 830 (1495)
Q Consensus 829 ~~ 830 (1495)
..
T Consensus 231 ~~ 232 (282)
T PRK13640 231 FS 232 (282)
T ss_pred hc
Confidence 64
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=344.52 Aligned_cols=204 Identities=24% Similarity=0.393 Sum_probs=166.2
Q ss_pred ccEEEEeeEEEecCCC--CCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcC------------
Q 000452 616 TAIEIADGNFSWDISS--HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG------------ 681 (1495)
Q Consensus 616 ~~i~~~~~~~~~~~~~--~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g------------ 681 (1495)
..++++|++++|+... ..++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 3589999999996321 13599999999999999999999999999999999999999999998876
Q ss_pred ------eEEEEccCCc--ccCccHHHHHhcCCC---CCHH----HHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchH
Q 000452 682 ------TKAYVAQSPW--IQSGKIEDNILFGKE---MDRE----RYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGG 746 (1495)
Q Consensus 682 ------~~ayv~Q~~~--l~~~ti~enI~fg~~---~~~~----~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGG 746 (1495)
.++|++|+|. +++.|++||+.|+.. ...+ +..+.++.++|..+ ..++.+.+||||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~----------~~~~~~~~LS~G 154 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPED----------YVKRSPFELSGG 154 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChh----------HhcCChhhCCHH
Confidence 2589999984 567799999988632 2221 22233444433211 124677899999
Q ss_pred HHHHHHHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHh--CCCEEEEEecCCCcccc-CCEEEEEeCCEEEEec
Q 000452 747 QKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL--NSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAG 823 (1495)
Q Consensus 747 QkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~--~~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~~~g 823 (1495)
||||++||||++.+|+++||||||++||+.+.+.+++ ++.... .++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 155 q~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~-~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g 233 (289)
T PRK13645 155 QKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFIN-LFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIG 233 (289)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 9999999999999999999999999999999888875 444443 38999999999998764 9999999999999999
Q ss_pred ChHHHHh
Q 000452 824 KYTDVIN 830 (1495)
Q Consensus 824 ~~~~l~~ 830 (1495)
+++++.+
T Consensus 234 ~~~~~~~ 240 (289)
T PRK13645 234 SPFEIFS 240 (289)
T ss_pred CHHHHhc
Confidence 9888754
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=339.29 Aligned_cols=201 Identities=27% Similarity=0.447 Sum_probs=168.9
Q ss_pred ccEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe-------------
Q 000452 616 TAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------- 682 (1495)
Q Consensus 616 ~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~------------- 682 (1495)
+.++++|+++.|+ ++++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.
T Consensus 4 ~~l~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 4 NKLNVIDLHKRYG---EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred ccEEEeeeEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence 4699999999995 357999999999999999999999999999999999999999999998872
Q ss_pred -------------EEEEccCCcccC-ccHHHHHhcCC----CCCH----HHHHHHHHHhCcHHHHhhcCCCCcccccCCC
Q 000452 683 -------------KAYVAQSPWIQS-GKIEDNILFGK----EMDR----ERYNAVLDACSLEKDLEILSFGDQTVVGERG 740 (1495)
Q Consensus 683 -------------~ayv~Q~~~l~~-~ti~enI~fg~----~~~~----~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g 740 (1495)
++|++|++.++. .|++||+.++. ..++ ++..+.++..++...+ .++..
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~----------~~~~~ 150 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERA----------QGKYP 150 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhh----------hhCCc
Confidence 699999998886 59999997642 1222 2334445544443221 14567
Q ss_pred CccchHHHHHHHHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCcccc-CCEEEEEeCCE
Q 000452 741 INLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL-NSKTVLYVTHQVEFLPA-ADLVLVIKDGK 818 (1495)
Q Consensus 741 ~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvIlvTH~~~~l~~-~d~i~~l~~G~ 818 (1495)
.+||||||||++||||++++|+++||||||++||+.+.+.+.+ ++..+. +|+|+|+|||+++++.. ||+|++|++|+
T Consensus 151 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~ 229 (257)
T PRK10619 151 VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLR-IMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGK 229 (257)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCE
Confidence 8999999999999999999999999999999999999888875 444443 58999999999999886 99999999999
Q ss_pred EEEecChHHHHh
Q 000452 819 ITQAGKYTDVIN 830 (1495)
Q Consensus 819 i~~~g~~~~l~~ 830 (1495)
+++.|+++++..
T Consensus 230 i~~~~~~~~~~~ 241 (257)
T PRK10619 230 IEEEGAPEQLFG 241 (257)
T ss_pred EEEeCCHHHhhh
Confidence 999999988764
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=335.98 Aligned_cols=199 Identities=25% Similarity=0.379 Sum_probs=167.8
Q ss_pred cEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe--------------
Q 000452 617 AIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------- 682 (1495)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~-------------- 682 (1495)
.++++|+++.|+ ++++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.
T Consensus 2 ~i~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T TIGR03411 2 ILYLEGLSVSFD---GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAG 78 (242)
T ss_pred eEEEEeeEEEcC---CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcC
Confidence 478999999995 247999999999999999999999999999999999999999999999872
Q ss_pred EEEEccCCcccCc-cHHHHHhcCCCC---------------CHHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchH
Q 000452 683 KAYVAQSPWIQSG-KIEDNILFGKEM---------------DRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGG 746 (1495)
Q Consensus 683 ~ayv~Q~~~l~~~-ti~enI~fg~~~---------------~~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGG 746 (1495)
++|++|++.++.+ |++||+.++... ++++.++.++..++. ....+...+||||
T Consensus 79 i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G 147 (242)
T TIGR03411 79 IGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLA-----------DEADRLAGLLSHG 147 (242)
T ss_pred eeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCc-----------hhhcCChhhCCHH
Confidence 6899999988875 999999875321 112233344443332 2235677899999
Q ss_pred HHHHHHHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEecCCCcccc-CCEEEEEeCCEEEEecCh
Q 000452 747 QKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKY 825 (1495)
Q Consensus 747 QkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~~~g~~ 825 (1495)
||||++||||++.+|+++||||||++||+.+.+.+.+ ++....+++|+|++||+++++.. ||++++|++|++++.|++
T Consensus 148 e~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~-~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~ 226 (242)
T TIGR03411 148 QKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAE-LLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSL 226 (242)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHH-HHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCH
Confidence 9999999999999999999999999999999888865 55555557999999999999875 999999999999999999
Q ss_pred HHHHh
Q 000452 826 TDVIN 830 (1495)
Q Consensus 826 ~~l~~ 830 (1495)
+++..
T Consensus 227 ~~~~~ 231 (242)
T TIGR03411 227 DQVQA 231 (242)
T ss_pred HHHhc
Confidence 88753
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=337.67 Aligned_cols=199 Identities=26% Similarity=0.425 Sum_probs=168.6
Q ss_pred cEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe-------------E
Q 000452 617 AIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------K 683 (1495)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~-------------~ 683 (1495)
.++++|++++|+ ++++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|. +
T Consensus 2 ~l~~~~l~~~~~---~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 78 (255)
T PRK11231 2 TLRTENLTVGYG---TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRL 78 (255)
T ss_pred EEEEEeEEEEEC---CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhhe
Confidence 378999999995 357999999999999999999999999999999999999999999999873 6
Q ss_pred EEEccCCcccCc-cHHHHHhcCCC-----C------CHHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHH
Q 000452 684 AYVAQSPWIQSG-KIEDNILFGKE-----M------DRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRI 751 (1495)
Q Consensus 684 ayv~Q~~~l~~~-ti~enI~fg~~-----~------~~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv 751 (1495)
+|++|++.++.+ |+.||+.++.. + +.++.+++++.+++.+.. ...+..||||||||+
T Consensus 79 ~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv 147 (255)
T PRK11231 79 ALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLA-----------DRRLTDLSGGQRQRA 147 (255)
T ss_pred EEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHH-----------cCCcccCCHHHHHHH
Confidence 899999887755 99999988631 1 123445556666664333 356789999999999
Q ss_pred HHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHH-hCCCEEEEEecCCCcccc-CCEEEEEeCCEEEEecChHHHH
Q 000452 752 QIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL-LNSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYTDVI 829 (1495)
Q Consensus 752 ~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~~~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~ 829 (1495)
+||||++.+|+++||||||++||+.+.+.+.+. +... .+++|+|++||+++.+.. ||++++|++|+++..|+++++.
T Consensus 148 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~-l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 226 (255)
T PRK11231 148 FLAMVLAQDTPVVLLDEPTTYLDINHQVELMRL-MRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVM 226 (255)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhc
Confidence 999999999999999999999999998888754 4443 358999999999999765 9999999999999999988875
Q ss_pred h
Q 000452 830 N 830 (1495)
Q Consensus 830 ~ 830 (1495)
.
T Consensus 227 ~ 227 (255)
T PRK11231 227 T 227 (255)
T ss_pred C
Confidence 4
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=337.92 Aligned_cols=199 Identities=21% Similarity=0.361 Sum_probs=166.5
Q ss_pred cEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe--------------
Q 000452 617 AIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------- 682 (1495)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~-------------- 682 (1495)
.++++|+++.|+ ++++|+|+||++++|++++|+||||||||||+++|.|+++|++|+|.++|.
T Consensus 5 ~l~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (255)
T PRK11300 5 LLSVSGLMMRFG---GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81 (255)
T ss_pred eEEEeeEEEEEC---CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcC
Confidence 589999999995 357999999999999999999999999999999999999999999999873
Q ss_pred EEEEccCCcccCc-cHHHHHhcCCC----------------CC------HHHHHHHHHHhCcHHHHhhcCCCCcccccCC
Q 000452 683 KAYVAQSPWIQSG-KIEDNILFGKE----------------MD------RERYNAVLDACSLEKDLEILSFGDQTVVGER 739 (1495)
Q Consensus 683 ~ayv~Q~~~l~~~-ti~enI~fg~~----------------~~------~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~ 739 (1495)
++|++|++.++.. |++||+.++.. .+ .++.++.++..++. ...+++
T Consensus 82 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~ 150 (255)
T PRK11300 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLL-----------EHANRQ 150 (255)
T ss_pred eEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChh-----------hhhhCC
Confidence 5789999998875 99999997531 00 01223333333332 234577
Q ss_pred CCccchHHHHHHHHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHH-hC-CCEEEEEecCCCcccc-CCEEEEEeC
Q 000452 740 GINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL-LN-SKTVLYVTHQVEFLPA-ADLVLVIKD 816 (1495)
Q Consensus 740 g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~~-~~tvIlvTH~~~~l~~-~d~i~~l~~ 816 (1495)
+.+||||||||++||||++.+|+++||||||++||+.+.+.+.+. +... .+ ++|+|++||+++.+.. ||++++|++
T Consensus 151 ~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~-L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~ 229 (255)
T PRK11300 151 AGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDEL-IAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQ 229 (255)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHH-HHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 889999999999999999999999999999999999998888754 4443 33 7899999999999865 999999999
Q ss_pred CEEEEecChHHHHh
Q 000452 817 GKITQAGKYTDVIN 830 (1495)
Q Consensus 817 G~i~~~g~~~~l~~ 830 (1495)
|++++.|+.+++..
T Consensus 230 g~i~~~~~~~~~~~ 243 (255)
T PRK11300 230 GTPLANGTPEEIRN 243 (255)
T ss_pred CeEEecCCHHHHhh
Confidence 99999999888753
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=339.79 Aligned_cols=205 Identities=25% Similarity=0.391 Sum_probs=172.2
Q ss_pred cccEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCC-----CCcEEEEcC--------
Q 000452 615 ETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPK-----ISGTLKLCG-------- 681 (1495)
Q Consensus 615 ~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~-----~~G~v~~~g-------- 681 (1495)
+..++++|++++|+ ++++|+|+||+|++|++++|+|+||||||||+++|+|+++| ++|+|.++|
T Consensus 17 ~~~l~~~nl~~~~~---~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~ 93 (267)
T PRK14235 17 EIKMRARDVSVFYG---EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL 93 (267)
T ss_pred CceEEEEeEEEEEC---CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc
Confidence 35799999999995 25799999999999999999999999999999999999974 899999887
Q ss_pred -------eEEEEccCCcccCccHHHHHhcCCC---C--C----HHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccch
Q 000452 682 -------TKAYVAQSPWIQSGKIEDNILFGKE---M--D----RERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSG 745 (1495)
Q Consensus 682 -------~~ayv~Q~~~l~~~ti~enI~fg~~---~--~----~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSG 745 (1495)
.++|++|+|.+++.|++||+.++.. . . .++.+++++.+++.+++. +..++.+.+|||
T Consensus 94 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSg 166 (267)
T PRK14235 94 DVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK-------DRLHEPGTGLSG 166 (267)
T ss_pred chHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCH
Confidence 2589999999888899999987532 1 1 223455666666643321 123567889999
Q ss_pred HHHHHHHHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEecCCCcccc-CCEEEEEeCCEEEEecC
Q 000452 746 GQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGK 824 (1495)
Q Consensus 746 GQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~~~g~ 824 (1495)
|||||++||||++.+|+++||||||++||+.+.+.+.+ ++....+++|+|++||+++.+.. ||++++|++|++++.|+
T Consensus 167 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~ 245 (267)
T PRK14235 167 GQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEE-LIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGD 245 (267)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHH-HHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999887765 55555557899999999999865 99999999999999999
Q ss_pred hHHHHh
Q 000452 825 YTDVIN 830 (1495)
Q Consensus 825 ~~~l~~ 830 (1495)
.+++..
T Consensus 246 ~~~~~~ 251 (267)
T PRK14235 246 TEKMFT 251 (267)
T ss_pred HHHHHh
Confidence 988764
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=354.91 Aligned_cols=187 Identities=28% Similarity=0.423 Sum_probs=159.4
Q ss_pred CccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcC-----------------eEEEEccCCcccC-c
Q 000452 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG-----------------TKAYVAQSPWIQS-G 695 (1495)
Q Consensus 634 ~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g-----------------~~ayv~Q~~~l~~-~ 695 (1495)
++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++|++|++.++. .
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 479999999999999999999999999999999999999999999976 3689999998875 6
Q ss_pred cHHHHHhcCCC---CC----HHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHHHHHhccCCCEeEecC
Q 000452 696 KIEDNILFGKE---MD----RERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDD 768 (1495)
Q Consensus 696 ti~enI~fg~~---~~----~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDe 768 (1495)
|++||+.++.. ++ +++..++++.++|.+.. .....+|||||||||+|||||+.+|+++||||
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~-----------~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDE 190 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERREKALDALRQVGLENYA-----------HSYPDELSGGMRQRVGLARALAINPDILLMDE 190 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhh-----------hcCcccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 99999998642 22 23445556666664333 35667999999999999999999999999999
Q ss_pred cCCccCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCcccc-CCEEEEEeCCEEEEecChHHHHhc
Q 000452 769 PFSAVDAHTGSHLFKEVLLGLL-NSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYTDVINS 831 (1495)
Q Consensus 769 p~saLD~~~~~~i~~~~~~~~~-~~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 831 (1495)
||++||+.+.+.+.+.+..... .++|+|+|||+++++.. ||+|++|++|++++.|+++++...
T Consensus 191 Pts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~ 255 (400)
T PRK10070 191 AFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNN 255 (400)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhC
Confidence 9999999999888765443333 48999999999998764 999999999999999999998764
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=338.14 Aligned_cols=204 Identities=25% Similarity=0.394 Sum_probs=169.9
Q ss_pred cEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCC--C---CCcEEEEcCe---------
Q 000452 617 AIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVP--K---ISGTLKLCGT--------- 682 (1495)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~--~---~~G~v~~~g~--------- 682 (1495)
.++++|+++.|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.++|.
T Consensus 12 ~l~i~~l~~~~~---~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~ 88 (259)
T PRK14274 12 VYQINGMNLWYG---QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDL 88 (259)
T ss_pred eEEEeeEEEEEC---CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCH
Confidence 589999999995 2479999999999999999999999999999999999987 3 6999988763
Q ss_pred ------EEEEccCCcccCccHHHHHhcCCCC----CHH----HHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHH
Q 000452 683 ------KAYVAQSPWIQSGKIEDNILFGKEM----DRE----RYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQK 748 (1495)
Q Consensus 683 ------~ayv~Q~~~l~~~ti~enI~fg~~~----~~~----~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 748 (1495)
++|++|++.+++.|++||+.++... +++ +.+++++..++.+.+. +..+..+.+||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~l~~~~~~LS~Gq~ 161 (259)
T PRK14274 89 VELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVK-------DRLHTQALSLSGGQQ 161 (259)
T ss_pred HHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hhhhCCcccCCHHHH
Confidence 5899999999888999999876321 221 2334455555533221 234577889999999
Q ss_pred HHHHHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEecCCCcccc-CCEEEEEeCCEEEEecChHH
Q 000452 749 QRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYTD 827 (1495)
Q Consensus 749 qRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 827 (1495)
||++||||++.+|+++||||||++||+++...+.+ ++....+++|+|++||+++.+.. ||++++|++|++++.|++++
T Consensus 162 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 240 (259)
T PRK14274 162 QRLCIARALATNPDVLLMDEPTSALDPVSTRKIEE-LILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNK 240 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999887764 56555567999999999999765 99999999999999999998
Q ss_pred HHhc
Q 000452 828 VINS 831 (1495)
Q Consensus 828 l~~~ 831 (1495)
+.+.
T Consensus 241 ~~~~ 244 (259)
T PRK14274 241 MFSN 244 (259)
T ss_pred HhhC
Confidence 8653
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-35 Score=368.38 Aligned_cols=212 Identities=24% Similarity=0.380 Sum_probs=185.0
Q ss_pred eEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHh-ccc
Q 000452 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLR-TRL 1325 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR-~~i 1325 (1495)
.|+++|++++|.. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++...+..+++ ..+
T Consensus 11 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 88 (510)
T PRK15439 11 LLCARSISKQYSG--VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGI 88 (510)
T ss_pred eEEEEeEEEEeCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCE
Confidence 5999999999964 3599999999999999999999999999999999999999999999999999888777665 469
Q ss_pred EEEcccCcCCCC-cHHHhcCCCCC---CCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHcc
Q 000452 1326 SIIPQDPVMFEG-TVRSNVDPLEE---YTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLK 1401 (1495)
Q Consensus 1326 siIpQdp~LF~G-TIR~NLdp~~~---~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALLr 1401 (1495)
+|+||+|.+|.+ |+++|+..... ..++++.++++..++.+.. +.. ..+||||||||++|||||++
T Consensus 89 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~----~~~LSgG~~qrv~la~aL~~ 157 (510)
T PRK15439 89 YLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDL-------DSS----AGSLEVADRQIVEILRGLMR 157 (510)
T ss_pred EEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccc-------cCC----hhhCCHHHHHHHHHHHHHHc
Confidence 999999998876 99999974221 1235677788888875432 222 34699999999999999999
Q ss_pred CCCeEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-cCEEEEEeCcEEEEecChhHHhh
Q 000452 1402 RRKILMLDEATASVDTATDNLIQQSLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLE 1471 (1495)
Q Consensus 1402 ~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~Ll~ 1471 (1495)
+|+||||||||++||+.+...+.+.|++.. .++|||+|+|+++.+.+ ||+|++|++|++++.|+++++.+
T Consensus 158 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (510)
T PRK15439 158 DSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLST 229 (510)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCH
Confidence 999999999999999999999999998864 47899999999999865 99999999999999999998864
|
|
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-36 Score=299.27 Aligned_cols=198 Identities=28% Similarity=0.411 Sum_probs=177.5
Q ss_pred EEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccEEEcccCcC
Q 000452 1255 VRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSIIPQDPVM 1334 (1495)
Q Consensus 1255 ~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~isiIpQdp~L 1334 (1495)
.+|.....++|+|+||++.+||.++|.||||||||||++.+.-+..|++|.++..|.|+++++.+.+|++++|+-|.|.|
T Consensus 9 ~~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paL 88 (223)
T COG4619 9 VGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPAL 88 (223)
T ss_pred HHhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccc
Confidence 35666666799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHhcC-CC----CCCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCeEEEE
Q 000452 1335 FEGTVRSNVD-PL----EEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLD 1409 (1495)
Q Consensus 1335 F~GTIR~NLd-p~----~~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALLr~~~ILiLD 1409 (1495)
|.+||.+||- |. ...+...-.+-|+++++.+.+-. .+-.+||||||||++|+|-|---|+||+||
T Consensus 89 fg~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~----------k~it~lSGGE~QriAliR~Lq~~P~ILLLD 158 (223)
T COG4619 89 FGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILT----------KNITELSGGEKQRIALIRNLQFMPKILLLD 158 (223)
T ss_pred cccchhhccccchHHhccCCChHHHHHHHHHcCCchhhhc----------chhhhccchHHHHHHHHHHhhcCCceEEec
Confidence 9999999996 43 23455566777888888766533 334689999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCchh-hhccCEEEEEeCcEEEE
Q 000452 1410 EATASVDTATDNLIQQSLRQHF--SDCTVITIAHRITS-VIDSDMVLLLSHGLIEE 1462 (1495)
Q Consensus 1410 EaTsslD~~Td~~Iq~~Ir~~f--~~~TVI~IAHRl~t-i~~~DrIlVL~~G~ivE 1462 (1495)
|+||+||..+.+.|.+.|..++ ++..++.|||+... +..+||++.+..|++-|
T Consensus 159 E~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~~~ 214 (223)
T COG4619 159 EITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAGE 214 (223)
T ss_pred CchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCcccc
Confidence 9999999999999999999988 46899999999987 88999999999998744
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=370.23 Aligned_cols=211 Identities=21% Similarity=0.323 Sum_probs=181.6
Q ss_pred eEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccC--CccEEEEcCEeCCCCCHHH-Hhc
Q 000452 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEP--AAGQILIDGIDISLIGLHD-LRT 1323 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep--~~G~I~IDG~dI~~i~l~~-LR~ 1323 (1495)
.|+++|++++|+. .++|+||||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++...+..+ .|+
T Consensus 5 ~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (506)
T PRK13549 5 LLEMKNITKTFGG--VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERA 82 (506)
T ss_pred eEEEeeeEEEeCC--eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHC
Confidence 5999999999963 3599999999999999999999999999999999999996 8999999999998877654 467
Q ss_pred ccEEEcccCcCCCC-cHHHhcCCCC------CCC----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHH
Q 000452 1324 RLSIIPQDPVMFEG-TVRSNVDPLE------EYT----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQL 1392 (1495)
Q Consensus 1324 ~isiIpQdp~LF~G-TIR~NLdp~~------~~s----d~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQr 1392 (1495)
+++|+||+|.+|.. |+++|+.... ..+ .+++.+++++.++.+.. +.. ..+||||||||
T Consensus 83 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~----~~~LSgGqkqr 151 (506)
T PRK13549 83 GIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINP-------ATP----VGNLGLGQQQL 151 (506)
T ss_pred CeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCc-------ccc----hhhCCHHHHHH
Confidence 89999999998876 9999997421 112 23466777777764322 222 35799999999
Q ss_pred HHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-cCEEEEEeCcEEEEecChhHHh
Q 000452 1393 VCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLL 1470 (1495)
Q Consensus 1393 l~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~Ll 1470 (1495)
++|||||+.+|+|||||||||+||+++...+.+.|++.. ++.|||+|+|+++.+.. ||+|++|++|++++.|+++++.
T Consensus 152 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 231 (506)
T PRK13549 152 VEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMT 231 (506)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccCC
Confidence 999999999999999999999999999999999998864 47899999999999875 9999999999999999998874
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=337.56 Aligned_cols=200 Identities=30% Similarity=0.427 Sum_probs=166.9
Q ss_pred cEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcC---------------
Q 000452 617 AIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG--------------- 681 (1495)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g--------------- 681 (1495)
.++++|++++|+ ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 3 ~l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (250)
T PRK11264 3 AIEVKNLVKKFH---GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGL 79 (250)
T ss_pred cEEEeceEEEEC---CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhH
Confidence 488999999995 24799999999999999999999999999999999999999999998865
Q ss_pred ------eEEEEccCCcccC-ccHHHHHhcCC----CCCH----HHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchH
Q 000452 682 ------TKAYVAQSPWIQS-GKIEDNILFGK----EMDR----ERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGG 746 (1495)
Q Consensus 682 ------~~ayv~Q~~~l~~-~ti~enI~fg~----~~~~----~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGG 746 (1495)
.++|++|++.++. .|++||+.++. ..+. ++..+.++..++.. .....+.+||||
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LS~G 148 (250)
T PRK11264 80 IRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAG-----------KETSYPRRLSGG 148 (250)
T ss_pred HHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcc-----------hhhCChhhCChH
Confidence 2689999998875 69999997642 1222 22334444444432 234677899999
Q ss_pred HHHHHHHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCcccc-CCEEEEEeCCEEEEecC
Q 000452 747 QKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL-NSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGK 824 (1495)
Q Consensus 747 QkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~~~g~ 824 (1495)
||||++||||++.+|+++||||||++||+.+.+.+.+ ++.... +++|+|++||+++.+.. ||++++|++|++++.|+
T Consensus 149 q~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~ 227 (250)
T PRK11264 149 QQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLN-TIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGP 227 (250)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999888875 444443 48999999999999865 99999999999999999
Q ss_pred hHHHHhc
Q 000452 825 YTDVINS 831 (1495)
Q Consensus 825 ~~~l~~~ 831 (1495)
.+++.+.
T Consensus 228 ~~~~~~~ 234 (250)
T PRK11264 228 AKALFAD 234 (250)
T ss_pred HHHHhcC
Confidence 9887643
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=333.99 Aligned_cols=190 Identities=25% Similarity=0.398 Sum_probs=163.8
Q ss_pred eeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccEEEcccCcCCC-CcHHHhc
Q 000452 1265 LRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSIIPQDPVMFE-GTVRSNV 1343 (1495)
Q Consensus 1265 L~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~isiIpQdp~LF~-GTIR~NL 1343 (1495)
|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. +.+++||+|.+|. .|+++|+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-----~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP-----DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-----hheEEecCcccCCCCCHHHHH
Confidence 579999999999999999999999999999999999999999999999876543 2489999999987 5999998
Q ss_pred CCC-----CCCCH----HHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCeEEEEcCCCC
Q 000452 1344 DPL-----EEYTD----EQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATAS 1414 (1495)
Q Consensus 1344 dp~-----~~~sd----~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALLr~~~ILiLDEaTss 1414 (1495)
... ...++ +++.++++.+++.+...+ ....||||||||++|||||+++|++|||||||++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 144 (230)
T TIGR01184 76 ALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADK-----------RPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGA 144 (230)
T ss_pred HHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcC-----------ChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcC
Confidence 531 22332 236777888887654333 2357999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhc--CCcEEEEEecCchhhhc-cCEEEEEeCcEEEEecChhHHh
Q 000452 1415 VDTATDNLIQQSLRQHF--SDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLL 1470 (1495)
Q Consensus 1415 lD~~Td~~Iq~~Ir~~f--~~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~Ll 1470 (1495)
||+.+...+.+.|++.. .++|||+|+|+++.+.. ||+|++|++|++++.|++.+++
T Consensus 145 LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 203 (230)
T TIGR01184 145 LDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEVP 203 (230)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceecc
Confidence 99999999999998864 37899999999998865 9999999999999999887663
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-35 Score=335.64 Aligned_cols=199 Identities=28% Similarity=0.430 Sum_probs=168.6
Q ss_pred cEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe-------------E
Q 000452 617 AIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------K 683 (1495)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~-------------~ 683 (1495)
.++++|++++|+ ++++|+|+||++++|++++|+|+||||||||+++|+|+.+|++|+|.++|. +
T Consensus 2 ~l~~~~l~~~~~---~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i 78 (258)
T PRK13548 2 MLEARNLSVRLG---GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRR 78 (258)
T ss_pred eEEEEeEEEEeC---CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhhe
Confidence 478999999996 257999999999999999999999999999999999999999999999883 5
Q ss_pred EEEccCCcc-cCccHHHHHhcCCC-C------CHHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHHHH
Q 000452 684 AYVAQSPWI-QSGKIEDNILFGKE-M------DRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIAR 755 (1495)
Q Consensus 684 ayv~Q~~~l-~~~ti~enI~fg~~-~------~~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LAR 755 (1495)
+|++|++.+ +..|++||+.++.. . .+++.++.++..++.+.. .....+||||||||++|||
T Consensus 79 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGe~qrv~la~ 147 (258)
T PRK13548 79 AVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLA-----------GRDYPQLSGGEQQRVQLAR 147 (258)
T ss_pred EEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHh-----------cCCcccCCHHHHHHHHHHH
Confidence 899999887 56799999987632 1 123445566666664332 3567899999999999999
Q ss_pred Hhc------cCCCEeEecCcCCccCHHHHHHHHHHHHHHHh--CCCEEEEEecCCCccc-cCCEEEEEeCCEEEEecChH
Q 000452 756 ALY------QDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL--NSKTVLYVTHQVEFLP-AADLVLVIKDGKITQAGKYT 826 (1495)
Q Consensus 756 Al~------~~~~illLDep~saLD~~~~~~i~~~~~~~~~--~~~tvIlvTH~~~~l~-~~d~i~~l~~G~i~~~g~~~ 826 (1495)
|++ .+|+++||||||++||+.+.+.+.+ ++.... +++|+|++||+++.+. .||++++|++|++++.|+++
T Consensus 148 al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 226 (258)
T PRK13548 148 VLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLR-LARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPA 226 (258)
T ss_pred HHhcccccCCCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHH
Confidence 999 5999999999999999999888865 454443 5899999999999987 49999999999999999998
Q ss_pred HHHh
Q 000452 827 DVIN 830 (1495)
Q Consensus 827 ~l~~ 830 (1495)
++..
T Consensus 227 ~~~~ 230 (258)
T PRK13548 227 EVLT 230 (258)
T ss_pred HHhC
Confidence 8764
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=333.07 Aligned_cols=197 Identities=28% Similarity=0.476 Sum_probs=164.2
Q ss_pred EEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcC--------------eE
Q 000452 618 IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG--------------TK 683 (1495)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g--------------~~ 683 (1495)
++++|+++.|+ ++++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .+
T Consensus 1 l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (230)
T TIGR03410 1 LEVSNLNVYYG---QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI 77 (230)
T ss_pred CEEEeEEEEeC---CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCe
Confidence 46899999996 24799999999999999999999999999999999999999999999986 26
Q ss_pred EEEccCCcccCc-cHHHHHhcCCCC---C-HHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHHHHHhc
Q 000452 684 AYVAQSPWIQSG-KIEDNILFGKEM---D-RERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALY 758 (1495)
Q Consensus 684 ayv~Q~~~l~~~-ti~enI~fg~~~---~-~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~ 758 (1495)
+|++|++.++.. |++||+.++... + .+.++++++..+.. .....+...+||||||||++||||++
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l----------~~~~~~~~~~LS~G~~qrv~la~al~ 147 (230)
T TIGR03410 78 AYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVL----------KEMLGRRGGDLSGGQQQQLAIARALV 147 (230)
T ss_pred EEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhH----------HHHhhCChhhCCHHHHHHHHHHHHHh
Confidence 899999988765 999999876321 1 22334444433211 11234677899999999999999999
Q ss_pred cCCCEeEecCcCCccCHHHHHHHHHHHHHHHh--CCCEEEEEecCCCcccc-CCEEEEEeCCEEEEecChHHH
Q 000452 759 QDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL--NSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYTDV 828 (1495)
Q Consensus 759 ~~~~illLDep~saLD~~~~~~i~~~~~~~~~--~~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 828 (1495)
++|+++||||||++||+.+.+++.+. +.... .++|+|++||+++++.. ||++++|++|++++.|+.+++
T Consensus 148 ~~p~illlDEPt~~LD~~~~~~l~~~-l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 148 TRPKLLLLDEPTEGIQPSIIKDIGRV-IRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHH-HHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 99999999999999999998888754 44443 37999999999999875 999999999999999998876
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-35 Score=312.86 Aligned_cols=159 Identities=30% Similarity=0.528 Sum_probs=148.1
Q ss_pred EEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHH-HHhcccE
Q 000452 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLH-DLRTRLS 1326 (1495)
Q Consensus 1248 I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~-~LR~~is 1326 (1495)
|+++|++++|+.. ++|+|+||+|++||.++|+|++|||||||+++|.|+++|++|+|.+||.++...+.. ..|++++
T Consensus 1 l~~~~l~~~~~~~--~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~ 78 (163)
T cd03216 1 LELRGITKRFGGV--KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIA 78 (163)
T ss_pred CEEEEEEEEECCe--EEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeE
Confidence 5789999999643 599999999999999999999999999999999999999999999999999988764 4678899
Q ss_pred EEcccCcCCCCcHHHhcCCCCCCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCeE
Q 000452 1327 IIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKIL 1406 (1495)
Q Consensus 1327 iIpQdp~LF~GTIR~NLdp~~~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALLr~~~IL 1406 (1495)
|+|| ||+|||||++||||++++|++|
T Consensus 79 ~~~q------------------------------------------------------LS~G~~qrl~laral~~~p~il 104 (163)
T cd03216 79 MVYQ------------------------------------------------------LSVGERQMVEIARALARNARLL 104 (163)
T ss_pred EEEe------------------------------------------------------cCHHHHHHHHHHHHHhcCCCEE
Confidence 9999 8999999999999999999999
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-cCEEEEEeCcEEEE
Q 000452 1407 MLDEATASVDTATDNLIQQSLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGLIEE 1462 (1495)
Q Consensus 1407 iLDEaTsslD~~Td~~Iq~~Ir~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE 1462 (1495)
+|||||++||.++.+.+.+.|++.. ++.|+|+++|+++.+.. ||++++|++|++++
T Consensus 105 llDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 105 ILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999998874 47899999999998765 99999999999976
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=346.96 Aligned_cols=206 Identities=26% Similarity=0.442 Sum_probs=171.0
Q ss_pred ccEEEEeeEEEecCCC----------CCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe---
Q 000452 616 TAIEIADGNFSWDISS----------HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT--- 682 (1495)
Q Consensus 616 ~~i~~~~~~~~~~~~~----------~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~--- 682 (1495)
..++++|++++|+... ..++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.
T Consensus 7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~ 86 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLL 86 (331)
T ss_pred ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECC
Confidence 4699999999996321 246899999999999999999999999999999999999999999999773
Q ss_pred -------------EEEEccCCc--cc-CccHHHHHhcCC-----CCCH----HHHHHHHHHhCcHHHHhhcCCCCccccc
Q 000452 683 -------------KAYVAQSPW--IQ-SGKIEDNILFGK-----EMDR----ERYNAVLDACSLEKDLEILSFGDQTVVG 737 (1495)
Q Consensus 683 -------------~ayv~Q~~~--l~-~~ti~enI~fg~-----~~~~----~~~~~vl~~~~l~~dl~~l~~gd~t~ig 737 (1495)
++||+|+|. ++ ..||.|||.++. ..++ ++..+.++.+++.++ ...
T Consensus 87 ~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~----------~~~ 156 (331)
T PRK15079 87 GMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPN----------LIN 156 (331)
T ss_pred cCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChH----------Hhc
Confidence 689999983 44 579999997531 2332 233445555555322 235
Q ss_pred CCCCccchHHHHHHHHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHh--CCCEEEEEecCCCcccc-CCEEEEE
Q 000452 738 ERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL--NSKTVLYVTHQVEFLPA-ADLVLVI 814 (1495)
Q Consensus 738 ~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~--~~~tvIlvTH~~~~l~~-~d~i~~l 814 (1495)
..+.+|||||||||+|||||+.+|+++|+||||++||+.+..++.+. +..+. .+.|+|+||||++.+.. ||+|++|
T Consensus 157 ~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~l-L~~l~~~~~~til~iTHdl~~~~~~~dri~vl 235 (331)
T PRK15079 157 RYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNL-LQQLQREMGLSLIFIAHDLAVVKHISDRVLVM 235 (331)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 67789999999999999999999999999999999999999998764 44433 38999999999999875 9999999
Q ss_pred eCCEEEEecChHHHHhcC
Q 000452 815 KDGKITQAGKYTDVINSG 832 (1495)
Q Consensus 815 ~~G~i~~~g~~~~l~~~~ 832 (1495)
++|+|++.|+.+++.+..
T Consensus 236 ~~G~ive~g~~~~i~~~~ 253 (331)
T PRK15079 236 YLGHAVELGTYDEVYHNP 253 (331)
T ss_pred ECCEEEEEcCHHHHHcCC
Confidence 999999999999987653
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-35 Score=339.46 Aligned_cols=203 Identities=26% Similarity=0.405 Sum_probs=172.7
Q ss_pred cEEEEeeEEEecCCC---CCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe-----------
Q 000452 617 AIEIADGNFSWDISS---HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT----------- 682 (1495)
Q Consensus 617 ~i~~~~~~~~~~~~~---~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~----------- 682 (1495)
.++++|++++|+... .+++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.++|.
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 589999999996321 357999999999999999999999999999999999999999999999872
Q ss_pred ---EEEEccCCc--ccCccHHHHHhcCCC---CC----HHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHH
Q 000452 683 ---KAYVAQSPW--IQSGKIEDNILFGKE---MD----RERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQR 750 (1495)
Q Consensus 683 ---~ayv~Q~~~--l~~~ti~enI~fg~~---~~----~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqR 750 (1495)
++|++|+|. ++..|+.||+.|+.. .+ +++.+++++.++|.+.. .....+||||||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-----------~~~~~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYR-----------RHAPHLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHh-----------hCCcccCCHHHHHH
Confidence 589999985 556789999998632 22 23456667777776544 35668999999999
Q ss_pred HHHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHH-h-CCCEEEEEecCCCccccCCEEEEEeCCEEEEecChHHH
Q 000452 751 IQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL-L-NSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDV 828 (1495)
Q Consensus 751 v~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~-~~~tvIlvTH~~~~l~~~d~i~~l~~G~i~~~g~~~~l 828 (1495)
++||||++.+|+++||||||++||+.+.+.+.+ ++..+ . .++|+|++||+++.+..||++++|++|+++..|+++++
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~-~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 231 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVN-TIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEI 231 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHH
Confidence 999999999999999999999999999988875 45444 3 38999999999999877999999999999999999988
Q ss_pred Hhc
Q 000452 829 INS 831 (1495)
Q Consensus 829 ~~~ 831 (1495)
...
T Consensus 232 ~~~ 234 (280)
T PRK13633 232 FKE 234 (280)
T ss_pred hcC
Confidence 653
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-35 Score=333.51 Aligned_cols=199 Identities=24% Similarity=0.416 Sum_probs=166.6
Q ss_pred cEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcC--------------e
Q 000452 617 AIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG--------------T 682 (1495)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g--------------~ 682 (1495)
.++++|++++|+ ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 3 ~l~~~~l~~~~~---~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (241)
T PRK10895 3 TLTAKNLAKAYK---GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRG 79 (241)
T ss_pred eEEEeCcEEEeC---CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhC
Confidence 478999999995 25799999999999999999999999999999999999999999999987 2
Q ss_pred EEEEccCCcccC-ccHHHHHhcCCC----CCH----HHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHH
Q 000452 683 KAYVAQSPWIQS-GKIEDNILFGKE----MDR----ERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQI 753 (1495)
Q Consensus 683 ~ayv~Q~~~l~~-~ti~enI~fg~~----~~~----~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 753 (1495)
++|++|++.++. .|++||+.++.. .++ ++.++.++..++.. ....+..+||||||||++|
T Consensus 80 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~l 148 (241)
T PRK10895 80 IGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEH-----------LRDSMGQSLSGGERRRVEI 148 (241)
T ss_pred eEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHH-----------HhhcchhhCCHHHHHHHHH
Confidence 689999998776 599999987532 122 23344444444322 2356778999999999999
Q ss_pred HHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCcccc-CCEEEEEeCCEEEEecChHHHHh
Q 000452 754 ARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL-NSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYTDVIN 830 (1495)
Q Consensus 754 ARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 830 (1495)
|||++.+|+++||||||++||+.+.+.+.+ ++.... +++|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 149 ARALAANPKFILLDEPFAGVDPISVIDIKR-IIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 999999999999999999999999888765 444443 58999999999988765 99999999999999999988754
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=383.69 Aligned_cols=208 Identities=26% Similarity=0.275 Sum_probs=149.6
Q ss_pred eEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHH---------HHhccccCCc----c----EEEEc
Q 000452 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQ---------TLFRIVEPAA----G----QILID 1309 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~---------~L~rl~ep~~----G----~I~ID 1309 (1495)
.++++|++. ..|+|+|++|++||.+||.|++|||||||++ .|.|...+.. + -|.||
T Consensus 600 ~L~l~~~~~-------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~id 672 (1809)
T PRK00635 600 TLTLSKATK-------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHIT 672 (1809)
T ss_pred eEEEecccc-------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEec
Confidence 588888862 2799999999999999999999999999999 4445332211 1 24555
Q ss_pred CEeCCCCC----H------HHHhc---------cc-----EEEccc------------------C---------------
Q 000452 1310 GIDISLIG----L------HDLRT---------RL-----SIIPQD------------------P--------------- 1332 (1495)
Q Consensus 1310 G~dI~~i~----l------~~LR~---------~i-----siIpQd------------------p--------------- 1332 (1495)
-.+|..-+ . +++|+ +. .+..|. |
T Consensus 673 Qspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~ 752 (1809)
T PRK00635 673 RDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRFL 752 (1809)
T ss_pred CCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCcccC
Confidence 55444321 1 14551 11 112221 1
Q ss_pred -----cCCCC-cHHHhcCCCCC-C-----CHHHHHH---HHHHcCCcHHHHhccCCcccc-cccCCCCCCchHHHHHHHH
Q 000452 1333 -----VMFEG-TVRSNVDPLEE-Y-----TDEQIWE---ALDKCQLGDEVRKKEGKLDSK-VTENGENWSMGQRQLVCLG 1396 (1495)
Q Consensus 1333 -----~LF~G-TIR~NLdp~~~-~-----sd~ei~~---aL~~~~L~~~v~~lp~gLdt~-v~e~G~nLS~GQrQrl~LA 1396 (1495)
+.+.+ ||.|||+.... + +.+++.+ +|+.+ |++.. .+.....||||||||++||
T Consensus 753 ~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l~~L~~v-----------GL~~l~l~q~~~tLSGGE~QRV~LA 821 (1809)
T PRK00635 753 PQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKIHALCSL-----------GLDYLPLGRPLSSLSGGEIQRLKLA 821 (1809)
T ss_pred HHHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHHHHHHHc-----------CCcchhhcCccccCCHHHHHHHHHH
Confidence 13444 78888864311 1 1223332 33333 34332 4555678999999999999
Q ss_pred HHHc---cCCCeEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhccCEEEEEe------CcEEEEecCh
Q 000452 1397 RVLL---KRRKILMLDEATASVDTATDNLIQQSLRQHF-SDCTVITIAHRITSVIDSDMVLLLS------HGLIEEYDSP 1466 (1495)
Q Consensus 1397 RALL---r~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f-~~~TVI~IAHRl~ti~~~DrIlVL~------~G~ivE~gsp 1466 (1495)
|||+ ++|++|||||||++||.++.+.+.+.|++.. ++.|||+|+|+++.+..||+|++|+ +|++++.|+|
T Consensus 822 raL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi~L~p~gg~~~G~iv~~Gtp 901 (1809)
T PRK00635 822 YELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVLELGPEGGNLGGYLLASCSP 901 (1809)
T ss_pred HHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEccCCCCCCCEEEEeCCH
Confidence 9998 5999999999999999999999999998864 4789999999999998899999996 7999999999
Q ss_pred hHHhhc
Q 000452 1467 RKLLEN 1472 (1495)
Q Consensus 1467 ~~Ll~~ 1472 (1495)
+++...
T Consensus 902 eel~~~ 907 (1809)
T PRK00635 902 EELIHL 907 (1809)
T ss_pred HHHHhc
Confidence 999863
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=337.03 Aligned_cols=204 Identities=26% Similarity=0.413 Sum_probs=170.2
Q ss_pred cEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCC---CCC--CCcEEEEcC----------
Q 000452 617 AIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGE---VPK--ISGTLKLCG---------- 681 (1495)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~---~~~--~~G~v~~~g---------- 681 (1495)
.++++|+++.|+ ++++|+|+||++++||+++|+|+||||||||+++|+|+ .+| ++|+|.++|
T Consensus 3 ~l~~~~~~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14245 3 KIDARDVNFWYG---DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV 79 (250)
T ss_pred EEEEEEEEEEEC---CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccH
Confidence 589999999995 25699999999999999999999999999999999996 454 589998876
Q ss_pred -----eEEEEccCCcccCccHHHHHhcCCCC----C----HHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHH
Q 000452 682 -----TKAYVAQSPWIQSGKIEDNILFGKEM----D----RERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQK 748 (1495)
Q Consensus 682 -----~~ayv~Q~~~l~~~ti~enI~fg~~~----~----~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 748 (1495)
.++|+||++.+++.|++||+.++... + +++.+++++.+++.++++ +..++.+.+||||||
T Consensus 80 ~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 152 (250)
T PRK14245 80 DELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVK-------DKLKESAFALSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchh-------hhhhCCcccCCHHHH
Confidence 26999999998888999999875321 1 123455566666543332 224577889999999
Q ss_pred HHHHHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEecCCCcccc-CCEEEEEeCCEEEEecChHH
Q 000452 749 QRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYTD 827 (1495)
Q Consensus 749 qRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 827 (1495)
||++||||++.+|+++||||||++||+.+.+.+.+ ++....+++|+|++||+++.+.. ||++++|++|++++.|++++
T Consensus 153 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~ 231 (250)
T PRK14245 153 QRLCIARAMAVSPSVLLMDEPASALDPISTAKVEE-LIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKK 231 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999888865 45555568999999999999865 99999999999999999999
Q ss_pred HHhc
Q 000452 828 VINS 831 (1495)
Q Consensus 828 l~~~ 831 (1495)
+.++
T Consensus 232 ~~~~ 235 (250)
T PRK14245 232 IFTN 235 (250)
T ss_pred HhcC
Confidence 8653
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=331.07 Aligned_cols=197 Identities=26% Similarity=0.391 Sum_probs=164.2
Q ss_pred ccEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe-------------
Q 000452 616 TAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------- 682 (1495)
Q Consensus 616 ~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~------------- 682 (1495)
..++++|+++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.
T Consensus 6 ~~i~~~~l~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (225)
T PRK10247 6 PLLQLQNVGYLAG---DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQ 82 (225)
T ss_pred ceEEEeccEEeeC---CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhc
Confidence 3699999999995 357999999999999999999999999999999999999999999999873
Q ss_pred EEEEccCCcccCccHHHHHhcCCC-----CCHHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHHHHHh
Q 000452 683 KAYVAQSPWIQSGKIEDNILFGKE-----MDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARAL 757 (1495)
Q Consensus 683 ~ayv~Q~~~l~~~ti~enI~fg~~-----~~~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl 757 (1495)
++|++|++.+++.|++||+.++.. .++++.++.++.+++.+ +...+.+.+||||||||++||||+
T Consensus 83 i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~qrv~laral 152 (225)
T PRK10247 83 VSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPD----------TILTKNIAELSGGEKQRISLIRNL 152 (225)
T ss_pred cEEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCCh----------HHhcCCcccCCHHHHHHHHHHHHH
Confidence 689999999998899999986421 12233445555555432 223577889999999999999999
Q ss_pred ccCCCEeEecCcCCccCHHHHHHHHHHHHHHH-h-CCCEEEEEecCCCccccCCEEEEEe-CCEEEEecChH
Q 000452 758 YQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL-L-NSKTVLYVTHQVEFLPAADLVLVIK-DGKITQAGKYT 826 (1495)
Q Consensus 758 ~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~-~~~tvIlvTH~~~~l~~~d~i~~l~-~G~i~~~g~~~ 826 (1495)
+++|+++||||||++||+.+.+.+.+ ++... . .++|+|++||++++++.||++++|+ ++..+++|+|+
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 153 QFMPKVLLLDEITSALDESNKHNVNE-IIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 99999999999999999999887765 45444 3 3789999999999988899999995 66667777764
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-35 Score=339.30 Aligned_cols=203 Identities=27% Similarity=0.427 Sum_probs=171.5
Q ss_pred cEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe-------------E
Q 000452 617 AIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------K 683 (1495)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~-------------~ 683 (1495)
.++++|++++|+.....++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|. +
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 589999999996322346999999999999999999999999999999999999999999999873 5
Q ss_pred EEEccCCc--ccCccHHHHHhcCCC---CCH----HHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHHH
Q 000452 684 AYVAQSPW--IQSGKIEDNILFGKE---MDR----ERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIA 754 (1495)
Q Consensus 684 ayv~Q~~~--l~~~ti~enI~fg~~---~~~----~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LA 754 (1495)
+|++|+|. ++..|+.|||.++.. ..+ ++++++++.+++.+.. ......||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFK-----------TREPARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHh-----------hCCcccCCHHHHHHHHHH
Confidence 89999984 667899999987532 222 2345666666665332 346789999999999999
Q ss_pred HHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHh-C-CCEEEEEecCCCccccCCEEEEEeCCEEEEecChHHHHhc
Q 000452 755 RALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL-N-SKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVINS 831 (1495)
Q Consensus 755 RAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~-~~tvIlvTH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 831 (1495)
||++.+|+++||||||++||+.+.+.+.+ ++..+. + |+|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~-~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMR-VIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFAT 230 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999888875 444443 3 8999999999999878999999999999999999888653
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-35 Score=338.12 Aligned_cols=200 Identities=24% Similarity=0.355 Sum_probs=168.9
Q ss_pred ccEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe-------------
Q 000452 616 TAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------- 682 (1495)
Q Consensus 616 ~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~------------- 682 (1495)
..++++|++++|+ ++++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.
T Consensus 10 ~~l~i~~l~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 86 (265)
T PRK10575 10 TTFALRNVSFRVP---GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARK 86 (265)
T ss_pred ceEEEeeEEEEEC---CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhh
Confidence 4699999999995 247999999999999999999999999999999999999999999999882
Q ss_pred EEEEccCCcccC-ccHHHHHhcCCC--------C---CHHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHH
Q 000452 683 KAYVAQSPWIQS-GKIEDNILFGKE--------M---DRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQR 750 (1495)
Q Consensus 683 ~ayv~Q~~~l~~-~ti~enI~fg~~--------~---~~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqR 750 (1495)
++|++|++.++. .|+.||+.++.. . ++++.++.++.+++.+.+ .....+||||||||
T Consensus 87 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qr 155 (265)
T PRK10575 87 VAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLA-----------HRLVDSLSGGERQR 155 (265)
T ss_pred eEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHh-----------cCCcccCCHHHHHH
Confidence 689999976654 599999987531 1 123455666777665433 34567899999999
Q ss_pred HHHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHH-hC-CCEEEEEecCCCcccc-CCEEEEEeCCEEEEecChHH
Q 000452 751 IQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL-LN-SKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYTD 827 (1495)
Q Consensus 751 v~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~~-~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 827 (1495)
++||||+..+|+++||||||++||+.+.+.+.+ ++... .+ ++|+|++||+++.+.. ||++++|++|++++.|+.++
T Consensus 156 v~laral~~~p~lllLDEPt~~LD~~~~~~~~~-~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~ 234 (265)
T PRK10575 156 AWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLA-LVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAE 234 (265)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHH
Confidence 999999999999999999999999999888765 44444 33 7999999999999864 99999999999999999888
Q ss_pred HHh
Q 000452 828 VIN 830 (1495)
Q Consensus 828 l~~ 830 (1495)
+..
T Consensus 235 ~~~ 237 (265)
T PRK10575 235 LMR 237 (265)
T ss_pred hcC
Confidence 754
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=329.52 Aligned_cols=188 Identities=29% Similarity=0.414 Sum_probs=158.2
Q ss_pred EEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe---------------
Q 000452 618 IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT--------------- 682 (1495)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~--------------- 682 (1495)
++++|+++.|+. .+++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 1 l~~~~l~~~~~~--~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (214)
T cd03292 1 IEFINVTKTYPN--GTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78 (214)
T ss_pred CEEEEEEEEeCC--CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence 468999999952 247999999999999999999999999999999999999999999998873
Q ss_pred -EEEEccCCcccC-ccHHHHHhcCCC---CC----HHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHH
Q 000452 683 -KAYVAQSPWIQS-GKIEDNILFGKE---MD----RERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQI 753 (1495)
Q Consensus 683 -~ayv~Q~~~l~~-~ti~enI~fg~~---~~----~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 753 (1495)
++|++|++.++. .|++||+.++.. .+ +++.++.++.+++++.+ .....+||||||||++|
T Consensus 79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~l 147 (214)
T cd03292 79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKH-----------RALPAELSGGEQQRVAI 147 (214)
T ss_pred heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHh-----------hCChhhcCHHHHHHHHH
Confidence 689999998876 599999987532 12 23445566666665433 34567999999999999
Q ss_pred HHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHH-hCCCEEEEEecCCCcccc-CCEEEEEeCCEE
Q 000452 754 ARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL-LNSKTVLYVTHQVEFLPA-ADLVLVIKDGKI 819 (1495)
Q Consensus 754 ARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~~~~tvIlvTH~~~~l~~-~d~i~~l~~G~i 819 (1495)
|||++.+|+++||||||++||+++.+.+.+. +... .+++|+|++||+++.+.. ||++++|++|++
T Consensus 148 aral~~~p~llllDEPt~~LD~~~~~~~~~~-l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 148 ARAIVNSPTILIADEPTGNLDPDTTWEIMNL-LKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHH-HHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 9999999999999999999999998888754 4443 358999999999999875 999999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-35 Score=339.39 Aligned_cols=199 Identities=25% Similarity=0.376 Sum_probs=166.7
Q ss_pred EEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe---------------
Q 000452 618 IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT--------------- 682 (1495)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~--------------- 682 (1495)
++++|++++|+ ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 2 l~~~~l~~~~~---~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (271)
T PRK13638 2 LATSDLWFRYQ---DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ 78 (271)
T ss_pred eEEEEEEEEcC---CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhh
Confidence 68899999995 357999999999999999999999999999999999999999999998772
Q ss_pred EEEEccCCc--ccCccHHHHHhcCC---CCCH----HHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHH
Q 000452 683 KAYVAQSPW--IQSGKIEDNILFGK---EMDR----ERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQI 753 (1495)
Q Consensus 683 ~ayv~Q~~~--l~~~ti~enI~fg~---~~~~----~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 753 (1495)
++|++|++. ++..|+.+|+.++. ..++ ++.+++++.+++.... .....+||||||||++|
T Consensus 79 i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrl~l 147 (271)
T PRK13638 79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFR-----------HQPIQCLSHGQKKRVAI 147 (271)
T ss_pred eEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHh-----------cCCchhCCHHHHHHHHH
Confidence 589999985 46678999998742 1222 2334455555554322 35678999999999999
Q ss_pred HHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHH-hCCCEEEEEecCCCcccc-CCEEEEEeCCEEEEecChHHHHhc
Q 000452 754 ARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL-LNSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYTDVINS 831 (1495)
Q Consensus 754 ARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~~~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 831 (1495)
||||+.+|+++||||||++||+.+...+.+ ++... .+++|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus 148 araL~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 148 AGALVLQARYLLLDEPTAGLDPAGRTQMIA-IIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999888875 44444 358999999999999865 999999999999999999887543
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-35 Score=337.47 Aligned_cols=205 Identities=25% Similarity=0.370 Sum_probs=170.8
Q ss_pred ccEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCC-----CCCcEEEEcCe--------
Q 000452 616 TAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVP-----KISGTLKLCGT-------- 682 (1495)
Q Consensus 616 ~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~-----~~~G~v~~~g~-------- 682 (1495)
..++++|++++|+ ++++|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.
T Consensus 12 ~~l~i~nl~~~~~---~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 12 IIISLQNVTISYG---TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred ceEEEEeEEEEEC---CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 4699999999995 2469999999999999999999999999999999999987 68999998762
Q ss_pred -------EEEEccCCcccCccHHHHHhcCCCC---C---HHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHH
Q 000452 683 -------KAYVAQSPWIQSGKIEDNILFGKEM---D---RERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQ 749 (1495)
Q Consensus 683 -------~ayv~Q~~~l~~~ti~enI~fg~~~---~---~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkq 749 (1495)
++|++|++.++..|++||+.++... + +++.+++++.+++...++ ........+|||||||
T Consensus 89 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~~q 161 (269)
T PRK14259 89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECK-------DKLNESGYSLSGGQQQ 161 (269)
T ss_pred HHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhh-------hhhCCCcccCCHHHHH
Confidence 6899999998888999999986432 1 233344555554432221 2345678899999999
Q ss_pred HHHHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEecCCCcccc-CCEEEEEeC-----------C
Q 000452 750 RIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPA-ADLVLVIKD-----------G 817 (1495)
Q Consensus 750 Rv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~~-~d~i~~l~~-----------G 817 (1495)
|++||||++.+|+++||||||++||+.+.+++.+ ++....+++|+|++||+++++.. ||++++|++ |
T Consensus 162 rl~laral~~~p~lllLDEPt~gLD~~~~~~l~~-~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g 240 (269)
T PRK14259 162 RLCIARTIAIEPEVILMDEPCSALDPISTLKIEE-TMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVG 240 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccc
Confidence 9999999999999999999999999999888875 45555567899999999998865 999999996 6
Q ss_pred EEEEecChHHHHhc
Q 000452 818 KITQAGKYTDVINS 831 (1495)
Q Consensus 818 ~i~~~g~~~~l~~~ 831 (1495)
++++.|+.+++.+.
T Consensus 241 ~~~~~~~~~~~~~~ 254 (269)
T PRK14259 241 YLVEFNETKKIFNS 254 (269)
T ss_pred eEEEeCCHHHHHhC
Confidence 78999999888653
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-35 Score=338.10 Aligned_cols=202 Identities=24% Similarity=0.379 Sum_probs=168.9
Q ss_pred cEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe-------------E
Q 000452 617 AIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------K 683 (1495)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~-------------~ 683 (1495)
.++++|++++|+.. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|. +
T Consensus 7 ~l~i~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 7 IIVFKNVSFQYQSD-ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred eEEEEEEEEEcCCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 58999999999632 246999999999999999999999999999999999999999999999883 5
Q ss_pred EEEccCCc--ccCccHHHHHhcCCC---CCH----HHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHHH
Q 000452 684 AYVAQSPW--IQSGKIEDNILFGKE---MDR----ERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIA 754 (1495)
Q Consensus 684 ayv~Q~~~--l~~~ti~enI~fg~~---~~~----~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LA 754 (1495)
+|++|+|+ ++..|+++|+.|+.. ... ++.+++++..++.+.. ..++.+||||||||++||
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~la 154 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERA-----------DYEPNALSGGQKQRVAIA 154 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhh-----------hCCcccCCHHHHHHHHHH
Confidence 89999985 456789999988632 222 2334445555543322 356789999999999999
Q ss_pred HHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHh-C-CCEEEEEecCCCccccCCEEEEEeCCEEEEecChHHHHhc
Q 000452 755 RALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL-N-SKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVINS 831 (1495)
Q Consensus 755 RAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~-~~tvIlvTH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 831 (1495)
||++.+|+++||||||++||+.+.+.+++ ++.... + ++|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 155 ral~~~p~lllLDEPt~~LD~~~~~~l~~-~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 155 GVLALNPSVIILDEATSMLDPDARQNLLD-LVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 99999999999999999999999888876 454443 3 7899999999998877999999999999999999887643
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-35 Score=330.16 Aligned_cols=194 Identities=28% Similarity=0.412 Sum_probs=162.3
Q ss_pred cEEEEeeEEEecCCCC-CCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcC--------------
Q 000452 617 AIEIADGNFSWDISSH-NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG-------------- 681 (1495)
Q Consensus 617 ~i~~~~~~~~~~~~~~-~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g-------------- 681 (1495)
.++++|++++|+.... .++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 5899999999963221 3599999999999999999999999999999999999999999999876
Q ss_pred ---eEEEEccCCcccC-ccHHHHHhcCC---CCC----HHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHH
Q 000452 682 ---TKAYVAQSPWIQS-GKIEDNILFGK---EMD----RERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQR 750 (1495)
Q Consensus 682 ---~~ayv~Q~~~l~~-~ti~enI~fg~---~~~----~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqR 750 (1495)
.++|++|++.++. .|++||+.++. ..+ +++.++.++.+++.+.++ ....+||||||||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~Ge~qr 154 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLD-----------HLPAQLSGGEQQR 154 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhh-----------CChhhCCHHHHHH
Confidence 3689999998876 59999998642 111 234556677776654333 4567899999999
Q ss_pred HHHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHH-hC-CCEEEEEecCCCccccCCEEEEEeCCEEEEe
Q 000452 751 IQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL-LN-SKTVLYVTHQVEFLPAADLVLVIKDGKITQA 822 (1495)
Q Consensus 751 v~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~~-~~tvIlvTH~~~~l~~~d~i~~l~~G~i~~~ 822 (1495)
++||||++.+|+++||||||++||+.+.+.+++. +... .+ ++|||++||+++++..||++++|++|++++.
T Consensus 155 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIADL-LFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 9999999999999999999999999998888754 4443 33 7899999999998877999999999999753
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-35 Score=338.30 Aligned_cols=205 Identities=23% Similarity=0.340 Sum_probs=169.3
Q ss_pred ccEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCC-----CCCcEEEEcC---------
Q 000452 616 TAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVP-----KISGTLKLCG--------- 681 (1495)
Q Consensus 616 ~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~-----~~~G~v~~~g--------- 681 (1495)
..++++|++++|+ ++++|+|+||++++||+++|+|+||||||||+++|+|+.+ |++|+|.++|
T Consensus 20 ~~l~~~~l~~~~~---~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 96 (268)
T PRK14248 20 HILEVKDLSIYYG---EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNIN 96 (268)
T ss_pred ceEEEEEEEEEeC---CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccccccc
Confidence 4699999999995 3579999999999999999999999999999999999864 6899998876
Q ss_pred ------eEEEEccCCcccCccHHHHHhcCCCC----C----HHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHH
Q 000452 682 ------TKAYVAQSPWIQSGKIEDNILFGKEM----D----RERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQ 747 (1495)
Q Consensus 682 ------~~ayv~Q~~~l~~~ti~enI~fg~~~----~----~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQ 747 (1495)
.++|++|++.+++.|++||+.++... . +++..+.++.+++..++ ....+..+.+|||||
T Consensus 97 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgGq 169 (268)
T PRK14248 97 VVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEV-------KDRLHSSALSLSGGQ 169 (268)
T ss_pred HHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcch-------HHHHhcCcccCCHHH
Confidence 26899999999988999999875321 1 12233344444443211 123457788999999
Q ss_pred HHHHHHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEecCCCcccc-CCEEEEEeCCEEEEecChH
Q 000452 748 KQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYT 826 (1495)
Q Consensus 748 kqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 826 (1495)
|||++||||++++|+++||||||++||+.+.+.+.+ ++....+++|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus 170 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~ 248 (268)
T PRK14248 170 QQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEE-LITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTE 248 (268)
T ss_pred HHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHH-HHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999888865 55555557899999999998764 9999999999999999998
Q ss_pred HHHhc
Q 000452 827 DVINS 831 (1495)
Q Consensus 827 ~l~~~ 831 (1495)
++...
T Consensus 249 ~~~~~ 253 (268)
T PRK14248 249 QIFTS 253 (268)
T ss_pred HHHhC
Confidence 87654
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-35 Score=331.44 Aligned_cols=205 Identities=20% Similarity=0.320 Sum_probs=164.7
Q ss_pred cEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe--------------
Q 000452 617 AIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------- 682 (1495)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~-------------- 682 (1495)
.++++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 5 ~l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 5 MLSFDKVSAHYG---KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred EEEEEeEEEeeC---CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence 589999999995 357999999999999999999999999999999999999999999999873
Q ss_pred EEEEccCCcccC-ccHHHHHhcCCCC-CHHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHHHHHhccC
Q 000452 683 KAYVAQSPWIQS-GKIEDNILFGKEM-DRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQD 760 (1495)
Q Consensus 683 ~ayv~Q~~~l~~-~ti~enI~fg~~~-~~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~ 760 (1495)
++|++|++.++. .|++||+.++... +.+..++.++ +-++.++..+. ...+...+||||||||++||||++.+
T Consensus 82 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~l~~~~~l~~-~~~~~~~~LS~G~~qrl~la~al~~~ 155 (237)
T PRK11614 82 VAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIK-----WVYELFPRLHE-RRIQRAGTMSGGEQQMLAIGRALMSQ 155 (237)
T ss_pred EEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHH-----HHHHHHHHHHH-HHhCchhhCCHHHHHHHHHHHHHHhC
Confidence 589999998876 5999999876421 2222221111 11111110111 12356789999999999999999999
Q ss_pred CCEeEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEecCCCcccc-CCEEEEEeCCEEEEecChHHHHh
Q 000452 761 ADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYTDVIN 830 (1495)
Q Consensus 761 ~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 830 (1495)
|+++||||||++||+.+.+.+.+.+.....+++|+|++||+++++.. ||++++|++|++++.|+++++..
T Consensus 156 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 156 PRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred CCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 99999999999999999888876443323358999999999998754 99999999999999999988853
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=329.85 Aligned_cols=188 Identities=24% Similarity=0.388 Sum_probs=157.9
Q ss_pred EEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe---------------
Q 000452 618 IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT--------------- 682 (1495)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~--------------- 682 (1495)
++++|++++|+. ++++|+|+||++++|++++|+||||||||||+++|+|+.+|++|+|.++|.
T Consensus 2 l~~~~l~~~~~~--~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 2 IEFHNVSKAYPG--GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred EEEEeeeEEeCC--CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 689999999942 357999999999999999999999999999999999999999999998772
Q ss_pred -EEEEccCCcccC-ccHHHHHhcCCC---CC----HHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHH
Q 000452 683 -KAYVAQSPWIQS-GKIEDNILFGKE---MD----RERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQI 753 (1495)
Q Consensus 683 -~ayv~Q~~~l~~-~ti~enI~fg~~---~~----~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 753 (1495)
++|++|+|.++. .|++||+.++.. .+ +++.++.++..++.+.+ .....+||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~l 148 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKA-----------DAFPEQLSGGEQQRVAI 148 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhh-----------hCChhhCCHHHHHHHHH
Confidence 589999998875 699999987521 22 23455666666665433 24557999999999999
Q ss_pred HHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEecCCCcccc-CCEEEEEeCCE
Q 000452 754 ARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPA-ADLVLVIKDGK 818 (1495)
Q Consensus 754 ARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~~-~d~i~~l~~G~ 818 (1495)
|||++.+|+++||||||++||+.+...+.+.+.....+++|+|++||+++++.. ||++++|++|+
T Consensus 149 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 149 ARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 999999999999999999999999888876443322358999999999999875 99999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-35 Score=335.91 Aligned_cols=204 Identities=27% Similarity=0.418 Sum_probs=169.2
Q ss_pred cEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCC--CC---CCcEEEEcC----------
Q 000452 617 AIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEV--PK---ISGTLKLCG---------- 681 (1495)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~--~~---~~G~v~~~g---------- 681 (1495)
.++++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|+. +| ++|+|.++|
T Consensus 5 ~l~~~~l~~~~~---~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14239 5 ILQVSDLSVYYN---KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81 (252)
T ss_pred eEEEEeeEEEEC---CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccch
Confidence 589999999996 257999999999999999999999999999999999985 36 599999876
Q ss_pred -----eEEEEccCCcccCccHHHHHhcCCC---C-CH----HHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHH
Q 000452 682 -----TKAYVAQSPWIQSGKIEDNILFGKE---M-DR----ERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQK 748 (1495)
Q Consensus 682 -----~~ayv~Q~~~l~~~ti~enI~fg~~---~-~~----~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 748 (1495)
.++|++|++.+++.|++||+.++.. . ++ ++..++++.+++.+.+. +..++.+.+||||||
T Consensus 82 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 154 (252)
T PRK14239 82 VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVK-------DRLHDSALGLSGGQQ 154 (252)
T ss_pred HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHH-------HHHhcCcccCCHHHH
Confidence 2689999999998999999987521 1 11 22334455555433221 234577889999999
Q ss_pred HHHHHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEecCCCcccc-CCEEEEEeCCEEEEecChHH
Q 000452 749 QRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYTD 827 (1495)
Q Consensus 749 qRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 827 (1495)
||++||||++.+|+++||||||++||+.+.+.+++ ++....+++|+|++||+++.+.. ||++++|++|++++.|+.++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 233 (252)
T PRK14239 155 QRVCIARVLATSPKIILLDEPTSALDPISAGKIEE-TLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQ 233 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHH-HHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999888875 45555557899999999998764 99999999999999999988
Q ss_pred HHhc
Q 000452 828 VINS 831 (1495)
Q Consensus 828 l~~~ 831 (1495)
+.+.
T Consensus 234 ~~~~ 237 (252)
T PRK14239 234 MFMN 237 (252)
T ss_pred HHhC
Confidence 8654
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-35 Score=326.48 Aligned_cols=189 Identities=31% Similarity=0.447 Sum_probs=159.4
Q ss_pred EEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe-----------EEEE
Q 000452 618 IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-----------KAYV 686 (1495)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~-----------~ayv 686 (1495)
|+++|++++|+. +. .|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|. ++|+
T Consensus 1 i~~~~l~~~~~~---~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 75 (211)
T cd03298 1 VRLDKIRFSYGE---QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSML 75 (211)
T ss_pred CEEEeEEEEeCC---Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEE
Confidence 468999999952 22 3999999999999999999999999999999999999999999883 6999
Q ss_pred ccCCcccC-ccHHHHHhcCCCC-------CHHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHHHHHhc
Q 000452 687 AQSPWIQS-GKIEDNILFGKEM-------DRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALY 758 (1495)
Q Consensus 687 ~Q~~~l~~-~ti~enI~fg~~~-------~~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~ 758 (1495)
+|++.++. .|++||+.++... ++++..++++.+++.+..+ ....+||||||||++||||++
T Consensus 76 ~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~ia~al~ 144 (211)
T cd03298 76 FQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEK-----------RLPGELSGGERQRVALARVLV 144 (211)
T ss_pred ecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHh-----------CCcccCCHHHHHHHHHHHHHh
Confidence 99999886 4999999876421 2335566677777754443 456799999999999999999
Q ss_pred cCCCEeEecCcCCccCHHHHHHHHHHHHHHHh--CCCEEEEEecCCCcccc-CCEEEEEeCCEEEEec
Q 000452 759 QDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL--NSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAG 823 (1495)
Q Consensus 759 ~~~~illLDep~saLD~~~~~~i~~~~~~~~~--~~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~~~g 823 (1495)
.+|+++||||||++||+.+.+.+.+. +.... +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 145 ~~p~llllDEP~~~LD~~~~~~l~~~-l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 145 RDKPVLLLDEPFAALDPALRAEMLDL-VLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 99999999999999999998888754 44443 38999999999999865 9999999999998654
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-35 Score=368.34 Aligned_cols=212 Identities=21% Similarity=0.304 Sum_probs=180.9
Q ss_pred eEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHH-Hhccc
Q 000452 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHD-LRTRL 1325 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~-LR~~i 1325 (1495)
.|+++|++++|.. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... .|+++
T Consensus 4 ~i~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 81 (501)
T PRK10762 4 LLQLKGIDKAFPG--VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGI 81 (501)
T ss_pred eEEEeeeEEEeCC--eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 4899999999964 35999999999999999999999999999999999999999999999999997765544 46789
Q ss_pred EEEcccCcCCCC-cHHHhcCCCC-------CCCH----HHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHH
Q 000452 1326 SIIPQDPVMFEG-TVRSNVDPLE-------EYTD----EQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLV 1393 (1495)
Q Consensus 1326 siIpQdp~LF~G-TIR~NLdp~~-------~~sd----~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl 1393 (1495)
+|+||+|.+|.. |+++|+.... ..+. +++.++++.+++.+. +|.+ ..+||||||||+
T Consensus 82 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~----~~~LSgG~~qrv 150 (501)
T PRK10762 82 GIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFS-------SDKL----VGELSIGEQQMV 150 (501)
T ss_pred EEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCC-------ccCc----hhhCCHHHHHHH
Confidence 999999988876 9999997421 1222 345667777776533 2322 246999999999
Q ss_pred HHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-cCEEEEEeCcEEEEecChhHHhh
Q 000452 1394 CLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLE 1471 (1495)
Q Consensus 1394 ~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~Ll~ 1471 (1495)
+|||||+.+|++|+|||||++||+.+...+.+.|++.. .+.|||+|+|+++.+.. ||+|++|++|++++.|+++++..
T Consensus 151 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (501)
T PRK10762 151 EIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLTE 230 (501)
T ss_pred HHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCCH
Confidence 99999999999999999999999999999999998763 36899999999999865 99999999999999999887643
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-35 Score=337.04 Aligned_cols=205 Identities=24% Similarity=0.407 Sum_probs=170.3
Q ss_pred ccEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCC-----CCcEEEEcCe--------
Q 000452 616 TAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPK-----ISGTLKLCGT-------- 682 (1495)
Q Consensus 616 ~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~-----~~G~v~~~g~-------- 682 (1495)
..++++|+++.|+ ++++|+|+||++++||+++|+|+||||||||+++|+|+.+| ++|+|.++|.
T Consensus 11 ~~l~~~~l~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 87 (258)
T PRK14268 11 PQIKVENLNLWYG---EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVD 87 (258)
T ss_pred eeEEEeeeEEEeC---CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccch
Confidence 4699999999995 35799999999999999999999999999999999999975 7999998762
Q ss_pred -------EEEEccCCcccCccHHHHHhcCCC---CCHH----HHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHH
Q 000452 683 -------KAYVAQSPWIQSGKIEDNILFGKE---MDRE----RYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQK 748 (1495)
Q Consensus 683 -------~ayv~Q~~~l~~~ti~enI~fg~~---~~~~----~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 748 (1495)
++|++|++.+++.|++||+.|+.. .+.+ +.+++++.+++..++ .....+.+.+||||||
T Consensus 88 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgG~~ 160 (258)
T PRK14268 88 VVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDET-------SDRLKSPALSLSGGQQ 160 (258)
T ss_pred HHHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcch-------hhhhcCChhhCCHHHH
Confidence 589999999888999999987532 2222 234455555543221 1223567889999999
Q ss_pred HHHHHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEecCCCcccc-CCEEEEEeCCEEEEecChHH
Q 000452 749 QRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYTD 827 (1495)
Q Consensus 749 qRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 827 (1495)
||++||||++.+|+++||||||++||+.+...+.+ ++....+++|+|++||+++.+.. ||++++|++|++++.|++++
T Consensus 161 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 239 (258)
T PRK14268 161 QRLCIARTLAVKPKIILFDEPTSALDPISTARIED-LIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQ 239 (258)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHH-HHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999888865 45555567999999999999865 99999999999999999988
Q ss_pred HHhc
Q 000452 828 VINS 831 (1495)
Q Consensus 828 l~~~ 831 (1495)
+...
T Consensus 240 ~~~~ 243 (258)
T PRK14268 240 IFHN 243 (258)
T ss_pred HhcC
Confidence 8643
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-35 Score=333.14 Aligned_cols=198 Identities=28% Similarity=0.402 Sum_probs=165.4
Q ss_pred cEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe--------------
Q 000452 617 AIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------- 682 (1495)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~-------------- 682 (1495)
.++++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.
T Consensus 2 ~l~~~~l~~~~~---~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T PRK11124 2 SIQLNGINCFYG---AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred EEEEEeeEEEEC---CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHH
Confidence 378999999995 257999999999999999999999999999999999999999999998763
Q ss_pred -----EEEEccCCcccC-ccHHHHHhcCC----CCC----HHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHH
Q 000452 683 -----KAYVAQSPWIQS-GKIEDNILFGK----EMD----RERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQK 748 (1495)
Q Consensus 683 -----~ayv~Q~~~l~~-~ti~enI~fg~----~~~----~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 748 (1495)
++|++|++.++. .|++|||.++. ... .++..+.++..+++. ..+....+||||||
T Consensus 79 ~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LS~G~~ 147 (242)
T PRK11124 79 ELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKP-----------YADRFPLHLSGGQQ 147 (242)
T ss_pred HHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-----------hhhCChhhCCHHHH
Confidence 589999998876 59999996421 111 123344444444433 23466789999999
Q ss_pred HHHHHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCcccc-CCEEEEEeCCEEEEecChH
Q 000452 749 QRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL-NSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYT 826 (1495)
Q Consensus 749 qRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 826 (1495)
||++||||++.+|+++||||||++||+.+.+.+.+ ++.... +++|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus 148 qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~-~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~ 226 (242)
T PRK11124 148 QRVAIARALMMEPQVLLFDEPTAALDPEITAQIVS-IIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDAS 226 (242)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999888875 455443 48999999999999865 9999999999999999988
Q ss_pred HHH
Q 000452 827 DVI 829 (1495)
Q Consensus 827 ~l~ 829 (1495)
++.
T Consensus 227 ~~~ 229 (242)
T PRK11124 227 CFT 229 (242)
T ss_pred Hhc
Confidence 764
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=307.60 Aligned_cols=200 Identities=23% Similarity=0.333 Sum_probs=168.2
Q ss_pred EEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcC------------eEEE
Q 000452 618 IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG------------TKAY 685 (1495)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g------------~~ay 685 (1495)
+++.+++.+|++ ...+++|+||++++|++++|.|||||||||+|+.|.+++.|++|.|.++| ++|.
T Consensus 2 l~v~~l~K~y~~--~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGV 79 (245)
T COG4555 2 LEVTDLTKSYGS--KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGV 79 (245)
T ss_pred eeeeehhhhccC--HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcce
Confidence 678899999963 34589999999999999999999999999999999999999999999998 3567
Q ss_pred EccCCccc-CccHHHHHhcCCC-C------CHHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHHHHHh
Q 000452 686 VAQSPWIQ-SGKIEDNILFGKE-M------DRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARAL 757 (1495)
Q Consensus 686 v~Q~~~l~-~~ti~enI~fg~~-~------~~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl 757 (1495)
++-+.-++ ..|+||||.|... + -+.+..+..+..++.+-+ .++..++|-||||||+|||||
T Consensus 80 l~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~-----------~rRv~~~S~G~kqkV~iARAl 148 (245)
T COG4555 80 LFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYL-----------DRRVGEFSTGMKQKVAIARAL 148 (245)
T ss_pred ecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHH-----------HHHHhhhchhhHHHHHHHHHH
Confidence 77655555 5699999986422 1 134556666666665544 478899999999999999999
Q ss_pred ccCCCEeEecCcCCccCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCcccc-CCEEEEEeCCEEEEecChHHHHhc
Q 000452 758 YQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL-NSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYTDVINS 831 (1495)
Q Consensus 758 ~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 831 (1495)
.+||++|+||||+|+||..+.+.+ .+.+.... .|++||+.||.++.++. ||+|+++++|+++..|+.+++.+.
T Consensus 149 vh~P~i~vlDEP~sGLDi~~~r~~-~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r 223 (245)
T COG4555 149 VHDPSILVLDEPTSGLDIRTRRKF-HDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR 223 (245)
T ss_pred hcCCCeEEEcCCCCCccHHHHHHH-HHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence 999999999999999999876655 55565554 49999999999999985 999999999999999999888653
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-35 Score=337.12 Aligned_cols=205 Identities=26% Similarity=0.371 Sum_probs=173.2
Q ss_pred ccEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCC-----CCCcEEEEcCe--------
Q 000452 616 TAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVP-----KISGTLKLCGT-------- 682 (1495)
Q Consensus 616 ~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~-----~~~G~v~~~g~-------- 682 (1495)
..++++|++++|+ ++++|+|+||++++||+++|+|+||||||||+++|+|+++ |++|+|.++|.
T Consensus 19 ~~l~~~nl~~~~~---~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 95 (267)
T PRK14237 19 IALSTKDLHVYYG---KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN 95 (267)
T ss_pred eEEEEeeEEEEEC---CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCC
Confidence 4699999999995 3579999999999999999999999999999999999986 58999988762
Q ss_pred -------EEEEccCCcccCccHHHHHhcCCC----CC----HHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHH
Q 000452 683 -------KAYVAQSPWIQSGKIEDNILFGKE----MD----RERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQ 747 (1495)
Q Consensus 683 -------~ayv~Q~~~l~~~ti~enI~fg~~----~~----~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQ 747 (1495)
++|++|++.++..|++||+.++.. .+ +++..++++.+++.++++ +..++.+.+|||||
T Consensus 96 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LS~G~ 168 (267)
T PRK14237 96 VYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVK-------DDLHKSALTLSGGQ 168 (267)
T ss_pred hHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhh-------hhhcCCcccCCHHH
Confidence 689999999988999999987532 12 233455566666643332 23467788999999
Q ss_pred HHHHHHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEecCCCcccc-CCEEEEEeCCEEEEecChH
Q 000452 748 KQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYT 826 (1495)
Q Consensus 748 kqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 826 (1495)
|||++||||++++|+++||||||++||+.+...+.+ ++....+++|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus 169 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 247 (267)
T PRK14237 169 QQRLCIARAIAVKPDILLMDEPASALDPISTMQLEE-TMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTR 247 (267)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999888875 45555567999999999998864 9999999999999999999
Q ss_pred HHHhc
Q 000452 827 DVINS 831 (1495)
Q Consensus 827 ~l~~~ 831 (1495)
++...
T Consensus 248 ~~~~~ 252 (267)
T PRK14237 248 NIFTN 252 (267)
T ss_pred HHhcC
Confidence 88653
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=372.36 Aligned_cols=216 Identities=25% Similarity=0.387 Sum_probs=146.1
Q ss_pred eEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHh------cccc----C-----------CccE
Q 000452 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLF------RIVE----P-----------AAGQ 1305 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~------rl~e----p-----------~~G~ 1305 (1495)
.++++|++. ..|+|+|++|++||.+||+|++|||||||++-.+ ++.+ | -.--
T Consensus 612 ~l~l~~~~~-------~~Lk~vsl~Ip~Geiv~VtGvsGSGKSTLl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (924)
T TIGR00630 612 FLTLKGARE-------NNLKNITVSIPLGLFTCITGVSGSGKSTLINDTLYPALARRLNGAKTQPGRYKSIEGLEHLDKV 684 (924)
T ss_pred eEEEEeCcc-------CCcCceEEEEeCCCEEEEECCCCCCHHHHHHHHHHHHHHHHhcccccCCCCcCccccccCCCce
Confidence 588999863 2699999999999999999999999999998333 1111 1 1113
Q ss_pred EEEcCEeCCCC---------C-HHHHhcccEEEcc------cCcCCC--------------CcHHHhcCCC---------
Q 000452 1306 ILIDGIDISLI---------G-LHDLRTRLSIIPQ------DPVMFE--------------GTVRSNVDPL--------- 1346 (1495)
Q Consensus 1306 I~IDG~dI~~i---------~-l~~LR~~isiIpQ------dp~LF~--------------GTIR~NLdp~--------- 1346 (1495)
|.||-.+|..- + .+.+|.-++=.|+ .|-.|+ |.+.-++.+.
T Consensus 685 v~vdQ~pi~~~~RS~~aTy~~~~d~iR~lfa~~~~a~~~g~~~~~FSfN~~~G~C~~C~G~G~~~~~~~f~~~~~~~C~~ 764 (924)
T TIGR00630 685 IHIDQSPIGRTPRSNPATYTGVFDEIRELFAETPEAKARGYTPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCEV 764 (924)
T ss_pred EEEecCCCCCCCCCchhhhhhhHHHHHHHHhcCCccccCCCChhhcCCCCCCCCCCCCccceEEEEEccCCCCcccCCCC
Confidence 55655554421 1 1345665655554 233343 1222111110
Q ss_pred ---CCCCH--------------------HHHHHHHHHc-CCcHHHHhc-cCCccc-ccccCCCCCCchHHHHHHHHHHHc
Q 000452 1347 ---EEYTD--------------------EQIWEALDKC-QLGDEVRKK-EGKLDS-KVTENGENWSMGQRQLVCLGRVLL 1400 (1495)
Q Consensus 1347 ---~~~sd--------------------~ei~~aL~~~-~L~~~v~~l-p~gLdt-~v~e~G~nLS~GQrQrl~LARALL 1400 (1495)
..|.+ +|..+..+.. .+.+..+.+ .-||+. ..+.....|||||+||++|||+|.
T Consensus 765 C~G~R~~~e~l~v~~~g~~i~dvl~~tv~e~~~f~~~~~~i~~~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~ 844 (924)
T TIGR00630 765 CKGKRYNRETLEVKYKGKNIADVLDMTVEEAYEFFEAVPSISRKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELS 844 (924)
T ss_pred cCCceeChHHHhceeCCCCHHHHhCCcHHHHHHHHHhccchhHHHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHh
Confidence 01111 1111111110 011111100 025554 357777899999999999999999
Q ss_pred c---CCCeEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhccCEEEEE------eCcEEEEecChhHH
Q 000452 1401 K---RRKILMLDEATASVDTATDNLIQQSLRQHF-SDCTVITIAHRITSVIDSDMVLLL------SHGLIEEYDSPRKL 1469 (1495)
Q Consensus 1401 r---~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f-~~~TVI~IAHRl~ti~~~DrIlVL------~~G~ivE~gsp~~L 1469 (1495)
+ +|+++||||||++||+.+...+.+.|++.. ++.|||+|+|+++.+..||+|++| ++|+|++.|+|+++
T Consensus 845 ~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 845 KRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIKTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred hcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 7 489999999999999999999999998875 478999999999999999999999 79999999999886
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=370.06 Aligned_cols=212 Identities=21% Similarity=0.307 Sum_probs=182.5
Q ss_pred eEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHH-hccc
Q 000452 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDL-RTRL 1325 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~L-R~~i 1325 (1495)
.|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++...+.... |+++
T Consensus 5 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 82 (510)
T PRK09700 5 YISMAGIGKSFGP--VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGI 82 (510)
T ss_pred eEEEeeeEEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCe
Confidence 4899999999964 359999999999999999999999999999999999999999999999999988876554 4679
Q ss_pred EEEcccCcCCCC-cHHHhcCCCC-------CC---C----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHH
Q 000452 1326 SIIPQDPVMFEG-TVRSNVDPLE-------EY---T----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQR 1390 (1495)
Q Consensus 1326 siIpQdp~LF~G-TIR~NLdp~~-------~~---s----d~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQr 1390 (1495)
+|+||+|.+|.+ |+++|+.... .. + ++++.++++.+++.+. +|.++ .+||||||
T Consensus 83 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-------~~~~~----~~LSgG~~ 151 (510)
T PRK09700 83 GIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVD-------LDEKV----ANLSISHK 151 (510)
T ss_pred EEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCC-------cccch----hhCCHHHH
Confidence 999999998876 9999996311 11 1 2346677777777532 23333 47999999
Q ss_pred HHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-cCEEEEEeCcEEEEecChhH
Q 000452 1391 QLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRK 1468 (1495)
Q Consensus 1391 Qrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~ 1468 (1495)
||++|||||+.+|+||||||||++||+.+...+.+.|++.. .++|||+|+|+++.+.+ ||+|++|++|++++.|++++
T Consensus 152 qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 231 (510)
T PRK09700 152 QMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSD 231 (510)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhh
Confidence 99999999999999999999999999999999999998864 47899999999999875 99999999999999999988
Q ss_pred Hhh
Q 000452 1469 LLE 1471 (1495)
Q Consensus 1469 Ll~ 1471 (1495)
+..
T Consensus 232 ~~~ 234 (510)
T PRK09700 232 VSN 234 (510)
T ss_pred CCH
Confidence 754
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-35 Score=325.42 Aligned_cols=194 Identities=26% Similarity=0.350 Sum_probs=168.5
Q ss_pred EEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccEE
Q 000452 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSI 1327 (1495)
Q Consensus 1248 I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~isi 1327 (1495)
|+++|++++|+. .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++.... ...|+++++
T Consensus 2 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~~~~ 78 (204)
T PRK13538 2 LEARNLACERDE--RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLLY 78 (204)
T ss_pred eEEEEEEEEECC--EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhheEE
Confidence 789999999964 35999999999999999999999999999999999999999999999999998654 457789999
Q ss_pred EcccCcCCC-CcHHHhcCCCC----CCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccC
Q 000452 1328 IPQDPVMFE-GTVRSNVDPLE----EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKR 1402 (1495)
Q Consensus 1328 IpQdp~LF~-GTIR~NLdp~~----~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALLr~ 1402 (1495)
+||++.++. .|+++|+.... ..+++++.++++..++.+...+. ...||+|||||++||||++++
T Consensus 79 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LS~G~~qrl~la~al~~~ 147 (204)
T PRK13538 79 LGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVP-----------VRQLSAGQQRRVALARLWLTR 147 (204)
T ss_pred eCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCC-----------hhhcCHHHHHHHHHHHHHhcC
Confidence 999998886 59999996321 13456788899999987554322 357999999999999999999
Q ss_pred CCeEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-cCEEEEE
Q 000452 1403 RKILMLDEATASVDTATDNLIQQSLRQHF-SDCTVITIAHRITSVID-SDMVLLL 1455 (1495)
Q Consensus 1403 ~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f-~~~TVI~IAHRl~ti~~-~DrIlVL 1455 (1495)
|+||+|||||++||+++...+.+.|++.. .++|+|+|+|+++.+.. .+|++++
T Consensus 148 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 148 APLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 99999999999999999999999998864 47899999999999954 5677766
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-35 Score=338.00 Aligned_cols=200 Identities=30% Similarity=0.464 Sum_probs=169.7
Q ss_pred cEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe-------------E
Q 000452 617 AIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------K 683 (1495)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~-------------~ 683 (1495)
.++++|++++|+. .+++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|. +
T Consensus 3 ~l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 80 (277)
T PRK13652 3 LIETRDLCYSYSG--SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFV 80 (277)
T ss_pred eEEEEEEEEEeCC--CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 4789999999952 246999999999999999999999999999999999999999999999873 6
Q ss_pred EEEccCCc--ccCccHHHHHhcCCC---CCH----HHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHHH
Q 000452 684 AYVAQSPW--IQSGKIEDNILFGKE---MDR----ERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIA 754 (1495)
Q Consensus 684 ayv~Q~~~--l~~~ti~enI~fg~~---~~~----~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LA 754 (1495)
+|++|+|. +++.|++||+.++.. +++ +++++.++.+++.+.+ ...+..||||||||++||
T Consensus 81 ~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~Gq~qrl~la 149 (277)
T PRK13652 81 GLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELR-----------DRVPHHLSGGEKKRVAIA 149 (277)
T ss_pred EEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHh-----------cCCcccCCHHHHHHHHHH
Confidence 89999973 567899999987532 333 2345666666665433 355679999999999999
Q ss_pred HHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHH-hC-CCEEEEEecCCCccc-cCCEEEEEeCCEEEEecChHHHHh
Q 000452 755 RALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL-LN-SKTVLYVTHQVEFLP-AADLVLVIKDGKITQAGKYTDVIN 830 (1495)
Q Consensus 755 RAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~~-~~tvIlvTH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~ 830 (1495)
|||+.+|+++||||||++||+.+.+.+.+. +... .+ ++|+|++||+++++. .||++++|++|++++.|+++++.+
T Consensus 150 raL~~~p~llilDEPt~gLD~~~~~~l~~~-l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 227 (277)
T PRK13652 150 GVIAMEPQVLVLDEPTAGLDPQGVKELIDF-LNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFL 227 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhc
Confidence 999999999999999999999998887754 4443 33 799999999999986 599999999999999999998864
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-35 Score=337.03 Aligned_cols=201 Identities=22% Similarity=0.303 Sum_probs=170.2
Q ss_pred cccEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe------------
Q 000452 615 ETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------ 682 (1495)
Q Consensus 615 ~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~------------ 682 (1495)
...++++|++++|+ ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 5 ~~~l~i~~l~~~~~---~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (265)
T PRK10253 5 VARLRGEQLTLGYG---KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVAR 81 (265)
T ss_pred ccEEEEEEEEEEEC---CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhh
Confidence 34699999999996 246999999999999999999999999999999999999999999999873
Q ss_pred -EEEEccCCccc-CccHHHHHhcCC-C-------CC---HHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHH
Q 000452 683 -KAYVAQSPWIQ-SGKIEDNILFGK-E-------MD---RERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQ 749 (1495)
Q Consensus 683 -~ayv~Q~~~l~-~~ti~enI~fg~-~-------~~---~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkq 749 (1495)
++|++|++.++ +.|++||+.++. + .. +++.+++++..++.+.. ...+.+|||||||
T Consensus 82 ~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~Gq~q 150 (265)
T PRK10253 82 RIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLA-----------DQSVDTLSGGQRQ 150 (265)
T ss_pred heEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHh-----------cCCcccCChHHHH
Confidence 68999998776 469999998752 1 11 22445566666665432 3677899999999
Q ss_pred HHHHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHH-h-CCCEEEEEecCCCcccc-CCEEEEEeCCEEEEecChH
Q 000452 750 RIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL-L-NSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYT 826 (1495)
Q Consensus 750 Rv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~-~~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 826 (1495)
|++||||++.+|+++||||||++||+.+.+++.+. +..+ . .++|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus 151 rv~laral~~~p~llllDEPt~gLD~~~~~~l~~~-L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 229 (265)
T PRK10253 151 RAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLEL-LSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPK 229 (265)
T ss_pred HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999988764 4443 3 37899999999998765 9999999999999999998
Q ss_pred HHHh
Q 000452 827 DVIN 830 (1495)
Q Consensus 827 ~l~~ 830 (1495)
++..
T Consensus 230 ~~~~ 233 (265)
T PRK10253 230 EIVT 233 (265)
T ss_pred HHhh
Confidence 8754
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-35 Score=336.91 Aligned_cols=206 Identities=25% Similarity=0.381 Sum_probs=168.3
Q ss_pred cEEEEeeEEEecCC------CCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcC---------
Q 000452 617 AIEIADGNFSWDIS------SHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG--------- 681 (1495)
Q Consensus 617 ~i~~~~~~~~~~~~------~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g--------- 681 (1495)
.++++|++++|+.. .++++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 47899999999632 135799999999999999999999999999999999999999999999887
Q ss_pred -------eEEEEccCCc--cc-CccHHHHHhcCC----CCCH----HHHHHHHHHhCcHHHHhhcCCCCcccccCCCCcc
Q 000452 682 -------TKAYVAQSPW--IQ-SGKIEDNILFGK----EMDR----ERYNAVLDACSLEKDLEILSFGDQTVVGERGINL 743 (1495)
Q Consensus 682 -------~~ayv~Q~~~--l~-~~ti~enI~fg~----~~~~----~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~L 743 (1495)
.++|++|+|. ++ ..|++||+.++. .++. ++..++++..++..+ ..+.++.+|
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~----------~~~~~~~~L 151 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSE----------DADKLPRQL 151 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChh----------hhhCChhhC
Confidence 2799999973 33 479999996532 1222 233445555544311 134677899
Q ss_pred chHHHHHHHHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHh-C-CCEEEEEecCCCcccc-CCEEEEEeCCEEE
Q 000452 744 SGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL-N-SKTVLYVTHQVEFLPA-ADLVLVIKDGKIT 820 (1495)
Q Consensus 744 SGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~-~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~ 820 (1495)
|||||||++||||++++|+++||||||++||+.+.+.+.+ ++..+. + ++|+|++||+++.+.. ||++++|++|+++
T Consensus 152 SgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~-~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 230 (265)
T TIGR02769 152 SGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILE-LLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIV 230 (265)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEE
Confidence 9999999999999999999999999999999999887765 454443 3 8999999999999875 9999999999999
Q ss_pred EecChHHHHhcCC
Q 000452 821 QAGKYTDVINSGT 833 (1495)
Q Consensus 821 ~~g~~~~l~~~~~ 833 (1495)
+.|+.+++.....
T Consensus 231 ~~g~~~~~~~~~~ 243 (265)
T TIGR02769 231 EECDVAQLLSFKH 243 (265)
T ss_pred EECCHHHHcCCCC
Confidence 9999999876433
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=328.38 Aligned_cols=188 Identities=35% Similarity=0.505 Sum_probs=155.8
Q ss_pred EEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe-------------EEE
Q 000452 619 EIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------KAY 685 (1495)
Q Consensus 619 ~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~-------------~ay 685 (1495)
+++|++++|+.. .+++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|
T Consensus 1 ~~~~l~~~~~~~-~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (211)
T cd03225 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGL 79 (211)
T ss_pred CceeEEEecCCC-CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceE
Confidence 367899999531 257999999999999999999999999999999999999999999999873 589
Q ss_pred EccCCc--ccCccHHHHHhcCCC---CC----HHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHHHHH
Q 000452 686 VAQSPW--IQSGKIEDNILFGKE---MD----RERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARA 756 (1495)
Q Consensus 686 v~Q~~~--l~~~ti~enI~fg~~---~~----~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARA 756 (1495)
++|++. +++.|++||+.++.. .+ +++.++.++..++.+.+ .++..+||||||||++||||
T Consensus 80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~lara 148 (211)
T cd03225 80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLR-----------DRSPFTLSGGQKQRVAIAGV 148 (211)
T ss_pred EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhh-----------cCCcccCCHHHHHHHHHHHH
Confidence 999983 567899999987532 22 22344555655554333 35678999999999999999
Q ss_pred hccCCCEeEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEecCCCcccc-CCEEEEEeCCE
Q 000452 757 LYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPA-ADLVLVIKDGK 818 (1495)
Q Consensus 757 l~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~~-~d~i~~l~~G~ 818 (1495)
++.+|+++||||||++||+.+.+.+.+.+.....+++|+|++||+++.+.. ||+|++|++|+
T Consensus 149 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 149 LAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 999999999999999999999988876443323348999999999999876 99999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-35 Score=334.06 Aligned_cols=204 Identities=27% Similarity=0.404 Sum_probs=169.8
Q ss_pred cEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCC-----CcEEEEcC----------
Q 000452 617 AIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKI-----SGTLKLCG---------- 681 (1495)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~-----~G~v~~~g---------- 681 (1495)
.++++|+++.|+ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|+ +|+|.++|
T Consensus 4 ~l~~~~l~~~~~---~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 80 (251)
T PRK14249 4 KIKIRGVNFFYH---KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDV 80 (251)
T ss_pred eEEEEEEEEEEC---CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccCh
Confidence 589999999995 256999999999999999999999999999999999999987 69998865
Q ss_pred -----eEEEEccCCcccCccHHHHHhcCCCC----CH----HHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHH
Q 000452 682 -----TKAYVAQSPWIQSGKIEDNILFGKEM----DR----ERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQK 748 (1495)
Q Consensus 682 -----~~ayv~Q~~~l~~~ti~enI~fg~~~----~~----~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 748 (1495)
.++|++|++.+++.|++||+.++..+ .+ ++.+++++..++.+.++ ...++.+.+||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~Gq~ 153 (251)
T PRK14249 81 VNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVK-------DNLHKSGLALSGGQQ 153 (251)
T ss_pred HHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhh-------hHhhCCcccCCHHHH
Confidence 26899999999888999999886421 11 22333344444432221 234678899999999
Q ss_pred HHHHHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEecCCCcccc-CCEEEEEeCCEEEEecChHH
Q 000452 749 QRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYTD 827 (1495)
Q Consensus 749 qRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 827 (1495)
||++||||++.+|+++||||||++||+.+...+.+ ++....+++|+|++||+++.+.. ||++++|++|++.+.|+.++
T Consensus 154 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 232 (251)
T PRK14249 154 QRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEE-LMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGE 232 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHH
Confidence 99999999999999999999999999999888765 55555568999999999999876 89999999999999999988
Q ss_pred HHhc
Q 000452 828 VINS 831 (1495)
Q Consensus 828 l~~~ 831 (1495)
+...
T Consensus 233 ~~~~ 236 (251)
T PRK14249 233 IFSR 236 (251)
T ss_pred HHhC
Confidence 7643
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-35 Score=343.92 Aligned_cols=200 Identities=23% Similarity=0.417 Sum_probs=170.6
Q ss_pred cEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe------------EE
Q 000452 617 AIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------KA 684 (1495)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~------------~a 684 (1495)
.++++|++++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|. ++
T Consensus 2 ~l~~~~l~~~~~---~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig 78 (301)
T TIGR03522 2 SIRVSSLTKLYG---TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIG 78 (301)
T ss_pred EEEEEEEEEEEC---CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceE
Confidence 378999999995 356999999999999999999999999999999999999999999999883 69
Q ss_pred EEccCCcccCc-cHHHHHhcCCC---CC----HHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHHHHH
Q 000452 685 YVAQSPWIQSG-KIEDNILFGKE---MD----RERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARA 756 (1495)
Q Consensus 685 yv~Q~~~l~~~-ti~enI~fg~~---~~----~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARA 756 (1495)
|+||++.++.. |++||+.+... .+ .++.+++++..++.+. .+++..+||||||||++||||
T Consensus 79 ~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G~~qrv~la~a 147 (301)
T TIGR03522 79 YLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPE-----------QHKKIGQLSKGYRQRVGLAQA 147 (301)
T ss_pred EecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchH-----------hcCchhhCCHHHHHHHHHHHH
Confidence 99999998865 99999975321 12 2344555555555432 346778999999999999999
Q ss_pred hccCCCEeEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEecCCCcccc-CCEEEEEeCCEEEEecChHHHHhc
Q 000452 757 LYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYTDVINS 831 (1495)
Q Consensus 757 l~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 831 (1495)
++++|++++|||||++||+.+.+.+++ .+....+++|+|++||+++.+.. ||+|++|++|++...|+.+++...
T Consensus 148 l~~~p~lliLDEPt~gLD~~~~~~l~~-~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 148 LIHDPKVLILDEPTTGLDPNQLVEIRN-VIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 999999999999999999999888876 45555568999999999998876 999999999999999999998653
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-35 Score=317.44 Aligned_cols=166 Identities=32% Similarity=0.593 Sum_probs=150.2
Q ss_pred EEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe------------EEE
Q 000452 618 IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------KAY 685 (1495)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~------------~ay 685 (1495)
++++|++++|+.. .+++++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|. ++|
T Consensus 1 i~~~~~~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 79 (178)
T cd03247 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISV 79 (178)
T ss_pred CEEEEEEEEeCCC-CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEE
Confidence 4689999999632 247999999999999999999999999999999999999999999999884 689
Q ss_pred EccCCcccCccHHHHHhcCCCCCHHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHHHHHhccCCCEeE
Q 000452 686 VAQSPWIQSGKIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYL 765 (1495)
Q Consensus 686 v~Q~~~l~~~ti~enI~fg~~~~~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ill 765 (1495)
++|++++++.|++||+ +.+||||||||++||||++.+|+++|
T Consensus 80 ~~q~~~~~~~tv~~~i--------------------------------------~~~LS~G~~qrv~laral~~~p~~ll 121 (178)
T cd03247 80 LNQRPYLFDTTLRNNL--------------------------------------GRRFSGGERQRLALARILLQDAPIVL 121 (178)
T ss_pred EccCCeeecccHHHhh--------------------------------------cccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999998 46899999999999999999999999
Q ss_pred ecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEecCCCccccCCEEEEEeCCEEEEec
Q 000452 766 FDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAG 823 (1495)
Q Consensus 766 LDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~~~d~i~~l~~G~i~~~g 823 (1495)
|||||++||+.+.+.+++. +....+++|+|++||++++++.||++++|++|++++.|
T Consensus 122 lDEP~~~LD~~~~~~l~~~-l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 122 LDEPTVGLDPITERQLLSL-IFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EECCcccCCHHHHHHHHHH-HHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999998888754 44445689999999999998889999999999998754
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-35 Score=334.80 Aligned_cols=204 Identities=28% Similarity=0.423 Sum_probs=169.7
Q ss_pred cEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCC-----CCCcEEEEcCe---------
Q 000452 617 AIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVP-----KISGTLKLCGT--------- 682 (1495)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~-----~~~G~v~~~g~--------- 682 (1495)
.++++|++++|+ .+++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.
T Consensus 4 ~l~~~~l~~~~~---~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~ 80 (251)
T PRK14251 4 IISAKDVHLSYG---NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL 80 (251)
T ss_pred eEEEEeeEEEEC---CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence 589999999995 2579999999999999999999999999999999999987 47999998773
Q ss_pred ------EEEEccCCcccCccHHHHHhcCCCC----CH----HHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHH
Q 000452 683 ------KAYVAQSPWIQSGKIEDNILFGKEM----DR----ERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQK 748 (1495)
Q Consensus 683 ------~ayv~Q~~~l~~~ti~enI~fg~~~----~~----~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 748 (1495)
++|++|++.+++.|++||+.++... ++ ++..++++.+++..+. ....++.+.+||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~ 153 (251)
T PRK14251 81 VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKET-------KDNLDRNAQAFSGGQQ 153 (251)
T ss_pred HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcch-------HHHhccChhhCCHHHH
Confidence 5899999999989999999875321 11 2344455555553211 1123467889999999
Q ss_pred HHHHHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEecCCCcccc-CCEEEEEeCCEEEEecChHH
Q 000452 749 QRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYTD 827 (1495)
Q Consensus 749 qRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 827 (1495)
||++||||++++|+++||||||++||+.+.+.+.+ ++....+++|+|++||+++++.. ||+|++|++|++++.|+.++
T Consensus 154 qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 232 (251)
T PRK14251 154 QRICIARALAVRPKVVLLDEPTSALDPISSSEIEE-TLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEE 232 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHH-HHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999888765 45555567899999999999765 99999999999999999988
Q ss_pred HHhc
Q 000452 828 VINS 831 (1495)
Q Consensus 828 l~~~ 831 (1495)
+...
T Consensus 233 ~~~~ 236 (251)
T PRK14251 233 MFIA 236 (251)
T ss_pred HHhC
Confidence 7643
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=376.46 Aligned_cols=220 Identities=23% Similarity=0.316 Sum_probs=181.5
Q ss_pred eEEEeeeeEEeCCC--CCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCC----------
Q 000452 1247 KIDLRDLQVRYAPH--MPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDIS---------- 1314 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~--~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~---------- 1314 (1495)
.|+++|++++|+.. ..++|+||||+|++||++||||+||||||||+++|.|+++|++|+|.++|+++.
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~ 91 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccc
Confidence 69999999999632 236999999999999999999999999999999999999999999999998652
Q ss_pred CCCH---HHHh-cccEEEcccC--cCCCC-cHHHhcCCC----CCCC----HHHHHHHHHHcCCcHHHHhccCCcccccc
Q 000452 1315 LIGL---HDLR-TRLSIIPQDP--VMFEG-TVRSNVDPL----EEYT----DEQIWEALDKCQLGDEVRKKEGKLDSKVT 1379 (1495)
Q Consensus 1315 ~i~l---~~LR-~~isiIpQdp--~LF~G-TIR~NLdp~----~~~s----d~ei~~aL~~~~L~~~v~~lp~gLdt~v~ 1379 (1495)
+.+. ..+| ++|++|+|+| .++.. ||++|+... ...+ ++++.++|+.+++.+.- .-++
T Consensus 92 ~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~----~~~~---- 163 (623)
T PRK10261 92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQ----TILS---- 163 (623)
T ss_pred cCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChh----hHHh----
Confidence 2222 2344 5799999999 57764 999998521 1122 24577788888875310 0112
Q ss_pred cCCCCCCchHHHHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecCchhhhc-cCEEEEEe
Q 000452 1380 ENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFS--DCTVITIAHRITSVID-SDMVLLLS 1456 (1495)
Q Consensus 1380 e~G~nLS~GQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~ 1456 (1495)
....+||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|++..+ ++|||+|+|+++.+.. ||||++|+
T Consensus 164 ~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~ 243 (623)
T PRK10261 164 RYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMY 243 (623)
T ss_pred CCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEee
Confidence 22357999999999999999999999999999999999999999999998752 7899999999999865 99999999
Q ss_pred CcEEEEecChhHHhhcCC
Q 000452 1457 HGLIEEYDSPRKLLENKS 1474 (1495)
Q Consensus 1457 ~G~ivE~gsp~~Ll~~~~ 1474 (1495)
+|+|++.|+++++++.+.
T Consensus 244 ~G~i~~~g~~~~~~~~~~ 261 (623)
T PRK10261 244 QGEAVETGSVEQIFHAPQ 261 (623)
T ss_pred CCeecccCCHHHhhcCCC
Confidence 999999999999986543
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=345.32 Aligned_cols=186 Identities=23% Similarity=0.349 Sum_probs=159.7
Q ss_pred CCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe------------EEEEccCCcccC-ccHHH
Q 000452 633 NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------KAYVAQSPWIQS-GKIED 699 (1495)
Q Consensus 633 ~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~------------~ayv~Q~~~l~~-~ti~e 699 (1495)
+++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|+||++.++. .|++|
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 85 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRE 85 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHH
Confidence 57999999999999999999999999999999999999999999999883 699999998875 49999
Q ss_pred HHhcCCC---CC----HHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHHHHHhccCCCEeEecCcCCc
Q 000452 700 NILFGKE---MD----RERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSA 772 (1495)
Q Consensus 700 nI~fg~~---~~----~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~sa 772 (1495)
|+.+... .+ +++.+++++.++|.+.. ..+..+||||||||++||||++++|+++||||||++
T Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 154 (302)
T TIGR01188 86 NLEMMGRLYGLPKDEAEERAEELLELFELGEAA-----------DRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTG 154 (302)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHh-----------CCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 9986421 11 23455666666665433 356789999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHHH-hCCCEEEEEecCCCcccc-CCEEEEEeCCEEEEecChHHHHh
Q 000452 773 VDAHTGSHLFKEVLLGL-LNSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYTDVIN 830 (1495)
Q Consensus 773 LD~~~~~~i~~~~~~~~-~~~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 830 (1495)
||+.+.+.+++. +... .+|+|+|++||+++.+.. ||+|++|++|+++..|+++++.+
T Consensus 155 LD~~~~~~l~~~-l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 213 (302)
T TIGR01188 155 LDPRTRRAIWDY-IRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKR 213 (302)
T ss_pred CCHHHHHHHHHH-HHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence 999998888764 4444 358999999999999875 99999999999999999998764
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-35 Score=333.34 Aligned_cols=203 Identities=28% Similarity=0.399 Sum_probs=169.5
Q ss_pred cEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCC-----CCcEEEEcC----------
Q 000452 617 AIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPK-----ISGTLKLCG---------- 681 (1495)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~-----~~G~v~~~g---------- 681 (1495)
.++++|+++.|+ ++++++|+||++++||+++|+||||||||||+++|+|..++ ++|+|.++|
T Consensus 3 ~l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14240 3 KISVKDLDLFYG---DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDV 79 (250)
T ss_pred eEEEEEEEEEEC---CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence 488999999996 24799999999999999999999999999999999998763 699999886
Q ss_pred -----eEEEEccCCcccCccHHHHHhcCCCC----C----HHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHH
Q 000452 682 -----TKAYVAQSPWIQSGKIEDNILFGKEM----D----RERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQK 748 (1495)
Q Consensus 682 -----~~ayv~Q~~~l~~~ti~enI~fg~~~----~----~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 748 (1495)
.++|++|++.+++.|++||+.++... + +++..+.++.+++.+++. ...++.+.+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~~ 152 (250)
T PRK14240 80 NQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVK-------DRLKKSALGLSGGQQ 152 (250)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhH-------HHHhcCCCCCCHHHH
Confidence 25899999998889999999886321 1 223344455555543332 124567889999999
Q ss_pred HHHHHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEecCCCcccc-CCEEEEEeCCEEEEecChHH
Q 000452 749 QRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYTD 827 (1495)
Q Consensus 749 qRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 827 (1495)
||++||||++.+|+++||||||++||+.+.+.+.+ ++....+++|+|++||+++.+.. ||++++|++|++++.|+.++
T Consensus 153 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 231 (250)
T PRK14240 153 QRLCIARALAVEPEVLLMDEPTSALDPISTLKIEE-LIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVD 231 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999888764 55555568899999999998765 99999999999999999888
Q ss_pred HHh
Q 000452 828 VIN 830 (1495)
Q Consensus 828 l~~ 830 (1495)
+..
T Consensus 232 ~~~ 234 (250)
T PRK14240 232 LFT 234 (250)
T ss_pred HHh
Confidence 754
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-35 Score=334.66 Aligned_cols=199 Identities=31% Similarity=0.421 Sum_probs=166.8
Q ss_pred EEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcC----------------
Q 000452 618 IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG---------------- 681 (1495)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g---------------- 681 (1495)
|+++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 1 i~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (252)
T TIGR03005 1 VRFSDVTKRFG---ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPA 77 (252)
T ss_pred CEEEEEEEEeC---CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccccc
Confidence 46899999995 25799999999999999999999999999999999999999999999876
Q ss_pred ----------eEEEEccCCcccC-ccHHHHHhcCCC----CCH----HHHHHHHHHhCcHHHHhhcCCCCcccccCCCCc
Q 000452 682 ----------TKAYVAQSPWIQS-GKIEDNILFGKE----MDR----ERYNAVLDACSLEKDLEILSFGDQTVVGERGIN 742 (1495)
Q Consensus 682 ----------~~ayv~Q~~~l~~-~ti~enI~fg~~----~~~----~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~ 742 (1495)
.++|++|++.++. .|++||+.++.. .+. ++..+.++..++.+. .++.+.+
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~ 146 (252)
T TIGR03005 78 DEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADK-----------ADHMPAQ 146 (252)
T ss_pred chhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhH-----------hhcChhh
Confidence 2689999998874 799999987521 222 234445555555432 3466789
Q ss_pred cchHHHHHHHHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHH-hC-CCEEEEEecCCCccc-cCCEEEEEeCCEE
Q 000452 743 LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL-LN-SKTVLYVTHQVEFLP-AADLVLVIKDGKI 819 (1495)
Q Consensus 743 LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~~-~~tvIlvTH~~~~l~-~~d~i~~l~~G~i 819 (1495)
||||||||++||||++++|+++||||||++||+.+...+++ ++... .+ ++|+|++||+++.+. .||++++|++|++
T Consensus 147 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i 225 (252)
T TIGR03005 147 LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLN-VIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRI 225 (252)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 99999999999999999999999999999999999888875 44443 33 899999999999986 4999999999999
Q ss_pred EEecChHHHHhc
Q 000452 820 TQAGKYTDVINS 831 (1495)
Q Consensus 820 ~~~g~~~~l~~~ 831 (1495)
++.|+++++.+.
T Consensus 226 ~~~g~~~~~~~~ 237 (252)
T TIGR03005 226 VEQGKPDEIFRQ 237 (252)
T ss_pred EEeCCHHHHhcC
Confidence 999999888643
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=321.98 Aligned_cols=191 Identities=20% Similarity=0.324 Sum_probs=148.5
Q ss_pred eEEEeeeeEEeCCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEcCEeCCCCCHHHHhcccE
Q 000452 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLS 1326 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~is 1326 (1495)
.+-+.||+|.|+... |.+++++|-|.--.+|+||||+|-|||||+++|.|-++|+.|+..=+ -|-+||
T Consensus 586 vLGlH~VtFgy~gqk-pLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKn-----------hrL~iG 653 (807)
T KOG0066|consen 586 VLGLHDVTFGYPGQK-PLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKN-----------HRLRIG 653 (807)
T ss_pred eeecccccccCCCCC-chhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhcc-----------ceeeee
Confidence 467899999997654 58999999999999999999999999999999999999999986533 355788
Q ss_pred EEcccCc--C-CCCcHHHhcCCCCCCCHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCC
Q 000452 1327 IIPQDPV--M-FEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRR 1403 (1495)
Q Consensus 1327 iIpQdp~--L-F~GTIR~NLdp~~~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQrl~LARALLr~~ 1403 (1495)
..-|..- | -+.|--+.|.-.-..+-++-..+|...||...-... .-..||||||-|++||-.-|+.|
T Consensus 654 ~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTi----------kikdLSGGQKaRValaeLal~~P 723 (807)
T KOG0066|consen 654 WFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFGLASHAHTI----------KIKDLSGGQKARVALAELALGGP 723 (807)
T ss_pred chhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhhhhhccceE----------eeeecCCcchHHHHHHHHhcCCC
Confidence 8888752 1 223544544322234456677777777765332111 12469999999999999999999
Q ss_pred CeEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc--cCEEEEEeCcEEEE
Q 000452 1404 KILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVID--SDMVLLLSHGLIEE 1462 (1495)
Q Consensus 1404 ~ILiLDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHRl~ti~~--~DrIlVL~~G~ivE 1462 (1495)
+||||||||.+||.++-..+-++|+++ +..||+|+|+-..|.. |. .+|+++-.|-|
T Consensus 724 DvlILDEPTNNLDIESIDALaEAIney--~GgVi~VsHDeRLi~eT~C~-LwVvE~Q~i~e 781 (807)
T KOG0066|consen 724 DVLILDEPTNNLDIESIDALAEAINEY--NGGVIMVSHDERLIVETDCN-LWVVENQGIDE 781 (807)
T ss_pred CEEEecCCCCCcchhhHHHHHHHHHhc--cCcEEEEecccceeeecCce-EEEEccCChhh
Confidence 999999999999999999999999987 5689999999888764 54 45555544444
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-35 Score=338.64 Aligned_cols=199 Identities=33% Similarity=0.491 Sum_probs=168.2
Q ss_pred EEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe---------------
Q 000452 618 IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT--------------- 682 (1495)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~--------------- 682 (1495)
++++|++++|+. .+++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 2 LETRDLKYSYPD--GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred EEEEEEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence 689999999952 346999999999999999999999999999999999999999999999872
Q ss_pred EEEEccCC--cccCccHHHHHhcCCC---CCH----HHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHH
Q 000452 683 KAYVAQSP--WIQSGKIEDNILFGKE---MDR----ERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQI 753 (1495)
Q Consensus 683 ~ayv~Q~~--~l~~~ti~enI~fg~~---~~~----~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 753 (1495)
++|++|+| .+++.|++||+.++.. ... ++..++++.++|.... ...+.+||||||||++|
T Consensus 80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~LS~Gq~qrv~l 148 (275)
T PRK13639 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFE-----------NKPPHHLSGGQKKRVAI 148 (275)
T ss_pred eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhh-----------cCChhhCCHHHHHHHHH
Confidence 58999997 5678899999987531 221 3345556666654221 35577999999999999
Q ss_pred HHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCcccc-CCEEEEEeCCEEEEecChHHHHh
Q 000452 754 ARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL-NSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYTDVIN 830 (1495)
Q Consensus 754 ARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 830 (1495)
|||++.+|+++||||||++||+.+...+.+. +..+. +++|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 149 aral~~~p~llllDEPt~gLD~~~~~~l~~~-l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (275)
T PRK13639 149 AGILAMKPEIIVLDEPTSGLDPMGASQIMKL-LYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFS 226 (275)
T ss_pred HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHH-HHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999998888754 44443 58999999999999874 99999999999999999998764
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-35 Score=328.75 Aligned_cols=195 Identities=30% Similarity=0.448 Sum_probs=156.8
Q ss_pred EEEEeeEEEecCCC-CCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcC---------------
Q 000452 618 IEIADGNFSWDISS-HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG--------------- 681 (1495)
Q Consensus 618 i~~~~~~~~~~~~~-~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g--------------- 681 (1495)
++++|++++|+... ..++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 68899999995311 12699999999999999999999999999999999999999999999876
Q ss_pred -eEEEEccCCc--cc-CccHHHHHhcCCC-----CCHHHHH----HHHHHhCcHHHHhhcCCCCcccccCCCCccchHHH
Q 000452 682 -TKAYVAQSPW--IQ-SGKIEDNILFGKE-----MDRERYN----AVLDACSLEKDLEILSFGDQTVVGERGINLSGGQK 748 (1495)
Q Consensus 682 -~~ayv~Q~~~--l~-~~ti~enI~fg~~-----~~~~~~~----~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 748 (1495)
.++|++|++. ++ ..|++||+.++.. .+++..+ +.++..++.. ...++++.+||||||
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~ 151 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPE----------EVLNRYPHELSGGQR 151 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCCh----------hHhhCCchhcCHHHH
Confidence 2689999983 33 5799999976421 1111111 2333333321 234567789999999
Q ss_pred HHHHHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHH-hC-CCEEEEEecCCCccc-cCCEEEEEeCCEEEEec
Q 000452 749 QRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL-LN-SKTVLYVTHQVEFLP-AADLVLVIKDGKITQAG 823 (1495)
Q Consensus 749 qRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~~-~~tvIlvTH~~~~l~-~~d~i~~l~~G~i~~~g 823 (1495)
||++||||++.+|+++||||||++||+.+.+.+.+. +... .+ ++|+|++||+++.+. .||++++|++|++++.|
T Consensus 152 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 152 QRVAIARALALNPKLLIADEPTSALDVSVQAQILDL-LKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 999999999999999999999999999998888754 4444 33 899999999999987 49999999999998654
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-35 Score=333.53 Aligned_cols=204 Identities=26% Similarity=0.403 Sum_probs=172.1
Q ss_pred cEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCC-----CCcEEEEcCe---------
Q 000452 617 AIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPK-----ISGTLKLCGT--------- 682 (1495)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~-----~~G~v~~~g~--------- 682 (1495)
.++++|+++.|+ ++++|+|+||++++||+++|+|+||||||||+++|+|+.+| ++|+|.++|.
T Consensus 4 ~l~~~~l~~~~~---~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 4 KMESKNLNLWYG---EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred EEEEEEeEEEEC---CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 588999999995 25799999999999999999999999999999999999875 7999998762
Q ss_pred ------EEEEccCCcccCccHHHHHhcCCCC----CH----HHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHH
Q 000452 683 ------KAYVAQSPWIQSGKIEDNILFGKEM----DR----ERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQK 748 (1495)
Q Consensus 683 ------~ayv~Q~~~l~~~ti~enI~fg~~~----~~----~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 748 (1495)
++|++|++.++..|++||+.|+... +. +++.++++.+++.++++ ...+.+..+||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 153 (251)
T PRK14270 81 VELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVK-------DDLKKSALKLSGGQQ 153 (251)
T ss_pred HHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhh-------hHhhCCcccCCHHHH
Confidence 6899999999989999999876321 11 23455666666643332 123567889999999
Q ss_pred HHHHHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEecCCCcccc-CCEEEEEeCCEEEEecChHH
Q 000452 749 QRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYTD 827 (1495)
Q Consensus 749 qRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 827 (1495)
||++||||++.+|+++||||||++||+.+..++.+ ++....+++|+|++||+++.+.. ||++++|++|++++.|+.++
T Consensus 154 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~-~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 232 (251)
T PRK14270 154 QRLCIARTIAVKPDVILMDEPTSALDPISTLKIED-LMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEK 232 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHH
Confidence 99999999999999999999999999999888865 55555557999999999998765 99999999999999999998
Q ss_pred HHhc
Q 000452 828 VINS 831 (1495)
Q Consensus 828 l~~~ 831 (1495)
+...
T Consensus 233 ~~~~ 236 (251)
T PRK14270 233 IFLE 236 (251)
T ss_pred HhcC
Confidence 8654
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-35 Score=334.64 Aligned_cols=197 Identities=26% Similarity=0.435 Sum_probs=166.0
Q ss_pred cEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCC---CcEEEEcCe-----------
Q 000452 617 AIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKI---SGTLKLCGT----------- 682 (1495)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~---~G~v~~~g~----------- 682 (1495)
.++++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.
T Consensus 4 ~l~~~nl~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 80 (262)
T PRK09984 4 IIRVEKLAKTFN---QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARD 80 (262)
T ss_pred EEEEeeEEEEeC---CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchh
Confidence 589999999995 357999999999999999999999999999999999999886 499998872
Q ss_pred -------EEEEccCCcccC-ccHHHHHhcCCC------------CC---HHHHHHHHHHhCcHHHHhhcCCCCcccccCC
Q 000452 683 -------KAYVAQSPWIQS-GKIEDNILFGKE------------MD---RERYNAVLDACSLEKDLEILSFGDQTVVGER 739 (1495)
Q Consensus 683 -------~ayv~Q~~~l~~-~ti~enI~fg~~------------~~---~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~ 739 (1495)
++|++|++.++. .|++||+.++.. .. +++.+++++..++.+. ....
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~ 149 (262)
T PRK09984 81 IRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHF-----------AHQR 149 (262)
T ss_pred HHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHH-----------HhCC
Confidence 589999998776 599999987631 01 2234555555555432 2457
Q ss_pred CCccchHHHHHHHHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHh--CCCEEEEEecCCCccc-cCCEEEEEeC
Q 000452 740 GINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL--NSKTVLYVTHQVEFLP-AADLVLVIKD 816 (1495)
Q Consensus 740 g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~--~~~tvIlvTH~~~~l~-~~d~i~~l~~ 816 (1495)
+.+||||||||++||||++.+|+++||||||++||+++.+.+.+. +.... +|+|+|++||+++.+. .||++++|++
T Consensus 150 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~ 228 (262)
T PRK09984 150 VSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDT-LRDINQNDGITVVVTLHQVDYALRYCERIVALRQ 228 (262)
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 789999999999999999999999999999999999998888754 54443 3799999999999875 4999999999
Q ss_pred CEEEEecChHHH
Q 000452 817 GKITQAGKYTDV 828 (1495)
Q Consensus 817 G~i~~~g~~~~l 828 (1495)
|++.+.|+++++
T Consensus 229 g~i~~~g~~~~~ 240 (262)
T PRK09984 229 GHVFYDGSSQQF 240 (262)
T ss_pred CEEEEeCCHHHh
Confidence 999999999886
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-35 Score=328.01 Aligned_cols=195 Identities=23% Similarity=0.330 Sum_probs=166.9
Q ss_pred EEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe---------EEEEcc
Q 000452 618 IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT---------KAYVAQ 688 (1495)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~---------~ayv~Q 688 (1495)
++++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|. ++|++|
T Consensus 1 l~l~~v~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q 77 (223)
T TIGR03740 1 LETKNLSKRFG---KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIE 77 (223)
T ss_pred CEEEeEEEEEC---CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcC
Confidence 46899999995 357999999999999999999999999999999999999999999999873 689999
Q ss_pred CCcccC-ccHHHHHhcCC---CCCHHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHHHHHhccCCCEe
Q 000452 689 SPWIQS-GKIEDNILFGK---EMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIY 764 (1495)
Q Consensus 689 ~~~l~~-~ti~enI~fg~---~~~~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~il 764 (1495)
++.++. .|++||+.++. ..++++..+.++..++++.. .....+||||||||++||||++.+|+++
T Consensus 78 ~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~~rv~laral~~~p~ll 146 (223)
T TIGR03740 78 SPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTG-----------KKKAKQFSLGMKQRLGIAIALLNHPKLL 146 (223)
T ss_pred CCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHH-----------hhhHhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 988765 69999997642 23456667777777776433 3456799999999999999999999999
Q ss_pred EecCcCCccCHHHHHHHHHHHHHHH-hCCCEEEEEecCCCcccc-CCEEEEEeCCEEEEecChHH
Q 000452 765 LFDDPFSAVDAHTGSHLFKEVLLGL-LNSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYTD 827 (1495)
Q Consensus 765 lLDep~saLD~~~~~~i~~~~~~~~-~~~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 827 (1495)
||||||++||+.+.+.+.+ ++... .+++|+|++||+++++.. ||++++|++|++.+.|+.++
T Consensus 147 llDEP~~~LD~~~~~~l~~-~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 147 ILDEPTNGLDPIGIQELRE-LIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred EECCCccCCCHHHHHHHHH-HHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 9999999999999888865 44444 358899999999999865 99999999999999988654
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-35 Score=334.69 Aligned_cols=198 Identities=25% Similarity=0.383 Sum_probs=166.5
Q ss_pred EEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe-------------EE
Q 000452 618 IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------KA 684 (1495)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~-------------~a 684 (1495)
++++|+++.|+ ++++|+|+||++++||+++|+|+||||||||+++|+|.++|++|+|.++|. ++
T Consensus 2 l~~~~l~~~~~---~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (256)
T TIGR03873 2 LRLSRVSWSAG---GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVA 78 (256)
T ss_pred ceEEeEEEEEC---CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheE
Confidence 67899999995 357999999999999999999999999999999999999999999999872 68
Q ss_pred EEccCCc-ccCccHHHHHhcCCC-C----------CHHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHH
Q 000452 685 YVAQSPW-IQSGKIEDNILFGKE-M----------DRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQ 752 (1495)
Q Consensus 685 yv~Q~~~-l~~~ti~enI~fg~~-~----------~~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~ 752 (1495)
|++|++. .+..|++||+.++.. . +.++..++++.+++.+. ..+.+.+||||||||++
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl~ 147 (256)
T TIGR03873 79 LVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHL-----------ADRDMSTLSGGERQRVH 147 (256)
T ss_pred EecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhh-----------hcCCcccCCHHHHHHHH
Confidence 9999985 456799999987631 1 11234455555555432 24567899999999999
Q ss_pred HHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCccc-cCCEEEEEeCCEEEEecChHHHHh
Q 000452 753 IARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL-NSKTVLYVTHQVEFLP-AADLVLVIKDGKITQAGKYTDVIN 830 (1495)
Q Consensus 753 LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvIlvTH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~ 830 (1495)
||||++.+|+++||||||++||+.....+.+ ++.... +++|+|++||+++.+. .||+|++|++|++++.|+.+++..
T Consensus 148 la~al~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 148 VARALAQEPKLLLLDEPTNHLDVRAQLETLA-LVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 9999999999999999999999999888865 454443 4789999999999986 499999999999999999988754
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-35 Score=333.28 Aligned_cols=193 Identities=33% Similarity=0.486 Sum_probs=162.8
Q ss_pred EEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe--------EEEEccC
Q 000452 618 IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT--------KAYVAQS 689 (1495)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~--------~ayv~Q~ 689 (1495)
++++|+++.|+ ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|++|+
T Consensus 2 l~~~~l~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~ 78 (255)
T PRK11248 2 LQISHLYADYG---GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQN 78 (255)
T ss_pred EEEEEEEEEeC---CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCC
Confidence 68899999995 257999999999999999999999999999999999999999999999873 6899999
Q ss_pred CcccC-ccHHHHHhcCCC---CC----HHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHHHHHhccCC
Q 000452 690 PWIQS-GKIEDNILFGKE---MD----RERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDA 761 (1495)
Q Consensus 690 ~~l~~-~ti~enI~fg~~---~~----~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~ 761 (1495)
+.++. .|++||+.++.. .+ .++..++++.+++.+.. ..++.+||||||||++||||++.+|
T Consensus 79 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgGq~qrl~laral~~~p 147 (255)
T PRK11248 79 EGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAE-----------KRYIWQLSGGQRQRVGIARALAANP 147 (255)
T ss_pred CccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHh-----------hCChhhCCHHHHHHHHHHHHHhcCC
Confidence 98775 699999987531 22 23445566666664332 3567899999999999999999999
Q ss_pred CEeEecCcCCccCHHHHHHHHHHHHHHH-h-CCCEEEEEecCCCcccc-CCEEEEEe--CCEEEEecCh
Q 000452 762 DIYLFDDPFSAVDAHTGSHLFKEVLLGL-L-NSKTVLYVTHQVEFLPA-ADLVLVIK--DGKITQAGKY 825 (1495)
Q Consensus 762 ~illLDep~saLD~~~~~~i~~~~~~~~-~-~~~tvIlvTH~~~~l~~-~d~i~~l~--~G~i~~~g~~ 825 (1495)
+++||||||++||+.+.+.+.+. +... . .|+|+|++||+++++.. ||++++|+ +|++++.++.
T Consensus 148 ~lllLDEPt~~LD~~~~~~l~~~-L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 148 QLLLLDEPFGALDAFTREQMQTL-LLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred CEEEEeCCCccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 99999999999999998888754 4443 3 48999999999999865 99999998 5999987654
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=366.13 Aligned_cols=220 Identities=22% Similarity=0.378 Sum_probs=183.1
Q ss_pred eEEEeeeeEEeCCC--CCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccC-----CccEEEEcCEeCCCCCHH
Q 000452 1247 KIDLRDLQVRYAPH--MPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEP-----AAGQILIDGIDISLIGLH 1319 (1495)
Q Consensus 1247 ~I~f~nv~~~Y~~~--~~~vL~~Is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep-----~~G~I~IDG~dI~~i~l~ 1319 (1495)
.|+++|++++|+.+ ..++|+||||+|++||++||+||||||||||+++|.|+++| ++|+|.+||.++...+..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 58999999999642 24699999999999999999999999999999999999987 799999999999887654
Q ss_pred H---Hh-cccEEEcccCc--CCC-CcHHHhcCC----CCCCC----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCC
Q 000452 1320 D---LR-TRLSIIPQDPV--MFE-GTVRSNVDP----LEEYT----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGEN 1384 (1495)
Q Consensus 1320 ~---LR-~~isiIpQdp~--LF~-GTIR~NLdp----~~~~s----d~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~n 1384 (1495)
+ .| ++++|+||+|. ++. -|+++|+.. ....+ ++++.++++.+++.+.... +|. ...+
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~----~~~----~~~~ 156 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKR----LTD----YPHQ 156 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHH----Hhh----CCcc
Confidence 3 34 57999999985 444 489998741 11122 3457788998888642111 122 2347
Q ss_pred CCchHHHHHHHHHHHccCCCeEEEEcCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCchhhhc-cCEEEEEeCcEEE
Q 000452 1385 WSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHF--SDCTVITIAHRITSVID-SDMVLLLSHGLIE 1461 (1495)
Q Consensus 1385 LS~GQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~Ir~~f--~~~TVI~IAHRl~ti~~-~DrIlVL~~G~iv 1461 (1495)
||||||||++|||||+.+|++|+||||||+||+.+...+.+.|++.. .+.|||+|+|+++.+.. ||||++|++|+++
T Consensus 157 LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~ 236 (529)
T PRK15134 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCV 236 (529)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999998864 37899999999998875 9999999999999
Q ss_pred EecChhHHhhcCC
Q 000452 1462 EYDSPRKLLENKS 1474 (1495)
Q Consensus 1462 E~gsp~~Ll~~~~ 1474 (1495)
+.|+++++++.+.
T Consensus 237 ~~g~~~~~~~~~~ 249 (529)
T PRK15134 237 EQNRAATLFSAPT 249 (529)
T ss_pred EeCCHHHHhhCCC
Confidence 9999999986543
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-35 Score=332.73 Aligned_cols=204 Identities=29% Similarity=0.389 Sum_probs=168.3
Q ss_pred cEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCC-----CCcEEEEcCe---------
Q 000452 617 AIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPK-----ISGTLKLCGT--------- 682 (1495)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~-----~~G~v~~~g~--------- 682 (1495)
.++++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.
T Consensus 3 ~l~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 79 (250)
T PRK14247 3 KIEIRDLKVSFG---QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE 79 (250)
T ss_pred eEEEEeeEEEEC---CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHH
Confidence 488999999995 24799999999999999999999999999999999999974 7999999873
Q ss_pred ----EEEEccCCcc-cCccHHHHHhcCCCC-----CH----HHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHH
Q 000452 683 ----KAYVAQSPWI-QSGKIEDNILFGKEM-----DR----ERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQK 748 (1495)
Q Consensus 683 ----~ayv~Q~~~l-~~~ti~enI~fg~~~-----~~----~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 748 (1495)
++|++|++.+ ++.|++||+.++... .. ++..+.++.+++.+.++ ......+.+||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~ 152 (250)
T PRK14247 80 LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVK-------DRLDAPAGKLSGGQQ 152 (250)
T ss_pred HhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchh-------hhhcCCcccCCHHHH
Confidence 6899999875 467999999875321 11 23344555555532111 123466789999999
Q ss_pred HHHHHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEecCCCccc-cCCEEEEEeCCEEEEecChHH
Q 000452 749 QRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLP-AADLVLVIKDGKITQAGKYTD 827 (1495)
Q Consensus 749 qRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~-~~d~i~~l~~G~i~~~g~~~~ 827 (1495)
||++||||++++|+++||||||++||+.+.+.+.+. +....+++|+|++||+++.+. .||++++|++|++.+.|+.++
T Consensus 153 qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~-l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (250)
T PRK14247 153 QRLCIARALAFQPEVLLADEPTANLDPENTAKIESL-FLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTRE 231 (250)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHH-HHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHH
Confidence 999999999999999999999999999998888754 444456899999999999986 499999999999999999988
Q ss_pred HHhc
Q 000452 828 VINS 831 (1495)
Q Consensus 828 l~~~ 831 (1495)
+.+.
T Consensus 232 ~~~~ 235 (250)
T PRK14247 232 VFTN 235 (250)
T ss_pred HHcC
Confidence 7643
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=334.10 Aligned_cols=205 Identities=25% Similarity=0.393 Sum_probs=172.3
Q ss_pred ccEEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCC-----CCCcEEEEcC---------
Q 000452 616 TAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVP-----KISGTLKLCG--------- 681 (1495)
Q Consensus 616 ~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~-----~~~G~v~~~g--------- 681 (1495)
..++++|++++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.++|
T Consensus 9 ~~l~i~~v~~~~~---~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 85 (264)
T PRK14243 9 TVLRTENLNVYYG---SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVD 85 (264)
T ss_pred eEEEEeeeEEEEC---CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccC
Confidence 3689999999995 2479999999999999999999999999999999999976 4799999877
Q ss_pred ------eEEEEccCCcccCccHHHHHhcCCCC---C---HHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHH
Q 000452 682 ------TKAYVAQSPWIQSGKIEDNILFGKEM---D---RERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQ 749 (1495)
Q Consensus 682 ------~~ayv~Q~~~l~~~ti~enI~fg~~~---~---~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkq 749 (1495)
.++|++|++.+++.|++||+.++... . +++..++++.+++..++.. ..++.+.+|||||||
T Consensus 86 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq~q 158 (264)
T PRK14243 86 PVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKD-------KLKQSGLSLSGGQQQ 158 (264)
T ss_pred hHHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHH-------HhcCCcccCCHHHHH
Confidence 26899999998888999999876421 1 2334455666666544421 235678899999999
Q ss_pred HHHHHHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHHhCCCEEEEEecCCCcccc-CCEEEEEe---------CCEE
Q 000452 750 RIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPA-ADLVLVIK---------DGKI 819 (1495)
Q Consensus 750 Rv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvIlvTH~~~~l~~-~d~i~~l~---------~G~i 819 (1495)
|++||||++.+|+++||||||++||+.+.+.+.+ ++....+++|+|++||+++.+.. ||++++|+ +|++
T Consensus 159 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i 237 (264)
T PRK14243 159 RLCIARAIAVQPEVILMDEPCSALDPISTLRIEE-LMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYL 237 (264)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceE
Confidence 9999999999999999999999999999888765 55555557899999999999865 99999998 8999
Q ss_pred EEecChHHHHhc
Q 000452 820 TQAGKYTDVINS 831 (1495)
Q Consensus 820 ~~~g~~~~l~~~ 831 (1495)
++.|+.+++.+.
T Consensus 238 ~~~~~~~~~~~~ 249 (264)
T PRK14243 238 VEFDRTEKIFNS 249 (264)
T ss_pred EEeCCHHHHHhC
Confidence 999999998653
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=325.72 Aligned_cols=197 Identities=31% Similarity=0.475 Sum_probs=166.6
Q ss_pred EEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe-----------EEEE
Q 000452 618 IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-----------KAYV 686 (1495)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~-----------~ayv 686 (1495)
++++|++++|+. .+ .|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|+
T Consensus 2 l~~~~l~~~~~~---~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 76 (232)
T PRK10771 2 LKLTDITWLYHH---LP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSML 76 (232)
T ss_pred eEEEEEEEEECC---cc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEE
Confidence 689999999952 22 3999999999999999999999999999999999999999999873 6899
Q ss_pred ccCCcccC-ccHHHHHhcCCC----CC---HHHHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHHHHHhc
Q 000452 687 AQSPWIQS-GKIEDNILFGKE----MD---RERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALY 758 (1495)
Q Consensus 687 ~Q~~~l~~-~ti~enI~fg~~----~~---~~~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~ 758 (1495)
+|++.++. .|++||+.++.. .. +++..++++..++++.++ .....||||||||++||||++
T Consensus 77 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~laral~ 145 (232)
T PRK10771 77 FQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLA-----------RLPGQLSGGQRQRVALARCLV 145 (232)
T ss_pred ecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHh-----------CCcccCCHHHHHHHHHHHHHh
Confidence 99998876 499999987531 11 234556677777655443 556789999999999999999
Q ss_pred cCCCEeEecCcCCccCHHHHHHHHHHHHHHH-h-CCCEEEEEecCCCcccc-CCEEEEEeCCEEEEecChHHHHhc
Q 000452 759 QDADIYLFDDPFSAVDAHTGSHLFKEVLLGL-L-NSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYTDVINS 831 (1495)
Q Consensus 759 ~~~~illLDep~saLD~~~~~~i~~~~~~~~-~-~~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 831 (1495)
.+|+++||||||++||+.+.+.+.+. +... . .++|+|++||+++.+.. ||++++|++|++.+.|+++++.+.
T Consensus 146 ~~p~lllLDEP~~gLD~~~~~~~~~~-l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~ 220 (232)
T PRK10771 146 REQPILLLDEPFSALDPALRQEMLTL-VSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSG 220 (232)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 99999999999999999998888754 4443 3 37899999999999875 999999999999999999888653
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=325.86 Aligned_cols=189 Identities=24% Similarity=0.353 Sum_probs=158.4
Q ss_pred EEEEeeEEEecCCCCCCccccceEEeeCCcEEEEEecCCccHHHHHHHHhCCCCCCCcEEEEcCe---------------
Q 000452 618 IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT--------------- 682 (1495)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~i~G~~GsGKSTLl~~llG~~~~~~G~v~~~g~--------------- 682 (1495)
++++|+++.|+. ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 2 IRFEHVSKAYLG--GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred EEEEeeEEEecC--CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence 688999999942 357999999999999999999999999999999999999999999998873
Q ss_pred -EEEEccCCcc-cCccHHHHHhcCCC---CCHH----HHHHHHHHhCcHHHHhhcCCCCcccccCCCCccchHHHHHHHH
Q 000452 683 -KAYVAQSPWI-QSGKIEDNILFGKE---MDRE----RYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQI 753 (1495)
Q Consensus 683 -~ayv~Q~~~l-~~~ti~enI~fg~~---~~~~----~~~~vl~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 753 (1495)
++|++|+|.+ ++.|++||+.++.. .+.+ +.++.++..++.+++ .....+||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~l 148 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKA-----------KNFPIQLSGGEQQRVGI 148 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhh-----------hCCchhCCHHHHHHHHH
Confidence 5899999986 56799999987531 2221 234455555554333 35668999999999999
Q ss_pred HHHhccCCCEeEecCcCCccCHHHHHHHHHHHHHHH-hCCCEEEEEecCCCcccc-CCEEEEEeCCEEE
Q 000452 754 ARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL-LNSKTVLYVTHQVEFLPA-ADLVLVIKDGKIT 820 (1495)
Q Consensus 754 ARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~~~~tvIlvTH~~~~l~~-~d~i~~l~~G~i~ 820 (1495)
|||++.+|+++||||||++||+.+.+.+.+ ++... .+++|+|++||+++++.. ||++++|++|+++
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 149 ARAVVNKPAVLLADEPTGNLDDALSEGILR-LFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLH 216 (222)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEc
Confidence 999999999999999999999999888875 44444 357899999999999876 9999999999986
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1495 | ||||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 1e-56 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 2e-08 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 4e-51 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 8e-21 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 5e-42 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 2e-06 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 5e-42 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 2e-06 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 5e-42 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 2e-06 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 9e-42 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 2e-05 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 2e-41 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 2e-05 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 4e-41 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 3e-06 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 8e-41 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 1e-05 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 9e-41 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 2e-05 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 2e-40 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 2e-06 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 3e-40 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 3e-05 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 7e-40 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 5e-06 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 2e-39 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 5e-05 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 4e-38 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 6e-05 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 2e-34 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 3e-33 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 3e-31 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 1e-30 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 1e-29 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 2e-28 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 2e-26 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 3e-26 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 3e-26 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 7e-26 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 1e-24 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 7e-24 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 5e-23 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 1e-23 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 3e-22 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 4e-22 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 1e-21 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 1e-21 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 3e-21 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 2e-20 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 2e-20 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 3e-20 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 1e-15 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 1e-15 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 3e-15 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 1e-14 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 2e-05 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 2e-14 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 2e-14 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-14 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-14 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 3e-14 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 7e-12 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 4e-11 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 6e-11 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 8e-11 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 5e-07 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 2e-10 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 2e-10 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 5e-10 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 1e-09 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 4e-09 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 5e-09 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 1e-08 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 1e-08 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 2e-08 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 2e-07 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 2e-08 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 2e-08 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 3e-08 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 4e-08 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 4e-08 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 9e-07 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 5e-08 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 9e-08 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 4e-06 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 1e-07 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 2e-07 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 1e-04 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 2e-07 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 3e-07 | ||
| 2ihy_A | 279 | Structure Of The Staphylococcus Aureus Putative Atp | 7e-07 | ||
| 1g29_1 | 372 | Malk Length = 372 | 7e-07 | ||
| 1g29_1 | 372 | Malk Length = 372 | 4e-04 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 1e-06 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 6e-06 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 2e-06 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 7e-06 | ||
| 1sgw_A | 214 | Putative Abc Transporter (Atp-Binding Protein) From | 8e-06 | ||
| 4fwi_B | 334 | Crystal Structure Of The Nucleotide-binding Domain | 9e-06 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 1e-05 | ||
| 2pjz_A | 263 | The Crystal Structure Of Putative Cobalt Transport | 3e-05 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 4e-04 | ||
| 3ozx_A | 538 | Crystal Structure Of Abce1 Of Sulfolubus Solfataric | 6e-04 |
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From Pyrococcus Furiosus Pfu-867808-001 Length = 214 | Back alignment and structure |
|
| >pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp- Binding Protein (cbio-2), St1066 Length = 263 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 450 bits (1160), Expect = e-146
Identities = 86/262 (32%), Positives = 144/262 (54%), Gaps = 1/262 (0%)
Query: 1231 LEIEESRPNHSWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKST 1290
+E + + WPS G++ ++DL +Y +L IS + ++ G++GRTGSGKST
Sbjct: 3 IENSHVKKDDIWPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKST 62
Query: 1291 LIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNVDPLEEYT 1350
L+ R++ G+I IDG+ I L R +IPQ +F GT R N+DP ++
Sbjct: 63 LLSAFLRLLNTE-GEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHS 121
Query: 1351 DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDE 1410
D++IW+ D+ L + + GKLD + + G S G +QL+CL R +L + KIL+LDE
Sbjct: 122 DQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDE 181
Query: 1411 ATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLL 1470
+A +D T +I+++L+Q F+DCTVI RI ++++ D L++ + +YDS +L
Sbjct: 182 PSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELY 241
Query: 1471 ENKSSSFSQLVAEYTQRSSSSL 1492
+ F + + +
Sbjct: 242 HYPADRFVAGFIGSPKMNFLPV 263
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 107 bits (268), Expect = 1e-24
Identities = 60/289 (20%), Positives = 109/289 (37%), Gaps = 22/289 (7%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK---------- 683
L++I+ + G RV + G GSGKS+LLS L + G +++ G
Sbjct: 35 AILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL-NTEGEIQIDGVSWDSITLEQWR 93
Query: 684 ---AYVAQSPWIQSGKIEDNI-LFGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGER 739
+ Q +I SG N+ D+E + D L +E V+ +
Sbjct: 94 KAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKV-ADEVGLRSVIEQFPGKLDFVLVDG 152
Query: 740 GINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVT 799
G LS G KQ + +AR++ A I L D+P + +D T + + L TV+
Sbjct: 153 GCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQ-IIRRTLKQAFADCTVILCE 211
Query: 800 HQVEFLPAADLVLVIKDGKITQAGKYTDVI-NSGTDFMELVDAHKQALSTLDSIEGRPLS 858
++E + D LVI++ K+ Q ++ F+ + + + + +
Sbjct: 212 ARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFVAGFIGSPKM----NFLPVKVTA 267
Query: 859 EKGSANGENDGTSATDGVVKEVENKEVQNDREDKVAEPQRQLVQEEERE 907
V VE+++VQ + L+ + +
Sbjct: 268 TAIDQVQVELPMPNRQQVWLPVESRDVQVGANMSLGIRPEHLLPSDIAD 316
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 415 bits (1068), Expect = e-134
Identities = 95/292 (32%), Positives = 152/292 (52%), Gaps = 5/292 (1%)
Query: 584 QTKVSLQRIASFFCLDELQPDLVEKQPRGSSETAIEIADGN--FSWDISSHNPTLKDINL 641
T+V ++ + +F +E +L EK + ++ D + FS P LKDIN
Sbjct: 2 TTEVVMENVTAF--WEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTPVLKDINF 59
Query: 642 KVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNI 701
K+ G +AV G+ G+GK+SLL I+GE+ G +K G ++ +Q+ WI G I++NI
Sbjct: 60 KIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMPGTIKENI 119
Query: 702 LFGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDA 761
+ G D RY +V+ AC LE+D+ + D V+GE GI LSGGQ+ RI +ARA+Y+DA
Sbjct: 120 I-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDA 178
Query: 762 DIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQ 821
D+YL D PF +D T +F+ + L+ +KT + VT ++E L AD +L++ +G
Sbjct: 179 DLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYF 238
Query: 822 AGKYTDVINSGTDFMELVDAHKQALSTLDSIEGRPLSEKGSANGENDGTSAT 873
G ++++ N DF + L+E +
Sbjct: 239 YGTFSELQNLRPDFSSKLMGCDSFDQFSAERRNSILTETLHRFSLEGDAPVS 290
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 118 bits (299), Expect = 2e-29
Identities = 53/286 (18%), Positives = 111/286 (38%), Gaps = 32/286 (11%)
Query: 1214 ISVERI--FQYTCIPSEPPLEIEESRPNHSWPSHGKIDLRDLQVRYAPHMPFVLRGISCT 1271
+ +E + F + + + + + + P VL+ I+
Sbjct: 5 VVMENVTAFWEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTP----VLKDINFK 60
Query: 1272 FPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSIIPQD 1331
+ + G TG+GK++L+ + +EP+ G+I G R+S Q+
Sbjct: 61 IERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RISFCSQN 107
Query: 1332 PVMFEGTVRSNVDPL-EEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQR 1390
+ GT++ N+ + Y + + + CQL +++ K K + + E G S GQR
Sbjct: 108 SWIMPGTIKENI--IGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQR 165
Query: 1391 QLVCLGRVLLKRRKILMLDEATASVDTAT-----DNLIQQSLRQHFSDCTVITIAHRITS 1445
+ L R + K + +LD +D T ++ + + + + T I + ++
Sbjct: 166 ARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA----NKTRILVTSKMEH 221
Query: 1446 VIDSDMVLLLSHGLIEEYDSPRKLLENKSSSFSQLVAEYTQRSSSS 1491
+ +D +L+L G Y + +L + FS + S
Sbjct: 222 LKKADKILILHEGSSYFYGTFSELQNLR-PDFSSKLMGCDSFDQFS 266
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 399 bits (1028), Expect = e-129
Identities = 86/228 (37%), Positives = 134/228 (58%), Gaps = 1/228 (0%)
Query: 614 SETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKI 673
+ T + + + W+ P LKDIN K+ G +AV G+ G+GK+SLL I+GE+
Sbjct: 3 TTTEVVMENVTAFWE-EGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS 61
Query: 674 SGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQ 733
G +K G ++ +Q WI G I++NI+FG D RY +V+ AC LE+D+ + D
Sbjct: 62 EGKIKHSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDN 121
Query: 734 TVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSK 793
V+GE GI LSGGQ+ RI +ARA+Y+DAD+YL D PF +D T +F+ + L+ +K
Sbjct: 122 IVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANK 181
Query: 794 TVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVINSGTDFMELVDA 841
T + VT ++E L AD +L++ +G G ++++ N DF +
Sbjct: 182 TRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSKLMG 229
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 114 bits (289), Expect = 9e-29
Identities = 49/246 (19%), Positives = 105/246 (42%), Gaps = 26/246 (10%)
Query: 1244 SHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAA 1303
+ ++ + ++ + VL+ I+ + + G TG+GK++L+ + +EP+
Sbjct: 3 TTTEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSE 62
Query: 1304 GQILIDGIDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNVDPL--EEYTDEQIWEALDKC 1361
G+I G R+S Q + GT++ N+ + Y + + + C
Sbjct: 63 GKIKHSG-------------RISFCSQFSWIMPGTIKENI--IFGVSYDEYRYRSVIKAC 107
Query: 1362 QLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTAT-- 1419
QL +++ K K + + E G S GQR + L R + K + +LD +D T
Sbjct: 108 QLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEK 167
Query: 1420 ---DNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSS 1476
++ + + + + T I + ++ + +D +L+L G Y + +L +
Sbjct: 168 EIFESCVCKLMA----NKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDF 223
Query: 1477 FSQLVA 1482
S+L+
Sbjct: 224 SSKLMG 229
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 399 bits (1028), Expect = e-129
Identities = 105/228 (46%), Positives = 152/228 (66%), Gaps = 3/228 (1%)
Query: 617 AIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGT 676
+I + + F+W S PTL I + G VAV G VG GKSSLLS +L E+ K+ G
Sbjct: 3 SITVRNATFTWA-RSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGH 61
Query: 677 LKLCGTKAYVAQSPWIQSGKIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQTVV 736
+ + G+ AYV Q WIQ+ + +NILFG +++ Y +V+ AC+L DLEIL GD+T +
Sbjct: 62 VAIKGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEI 121
Query: 737 GERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLL--GLLNSKT 794
GE+G+NLSGGQKQR+ +ARA+Y +ADIYLFDDP SAVDAH G H+F+ V+ G+L +KT
Sbjct: 122 GEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKT 181
Query: 795 VLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVINSGTDFMELVDAH 842
+ VTH + +LP D+++V+ GKI++ G Y +++ F E + +
Sbjct: 182 RILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFAEFLRTY 229
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 108 bits (273), Expect = 1e-26
Identities = 55/251 (21%), Positives = 107/251 (42%), Gaps = 25/251 (9%)
Query: 1246 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQ 1305
I +R+ +A P L GI+ + P +VG+ G GKS+L+ L ++ G
Sbjct: 2 NSITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGH 61
Query: 1306 ILIDGIDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNVDPL--EEYTDEQIWEALDKCQL 1363
+ I G ++ +PQ + ++R N+ L + + + C L
Sbjct: 62 VAIKG-------------SVAYVPQQAWIQNDSLRENI--LFGCQLEEPYYRSVIQACAL 106
Query: 1364 GDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTAT---- 1419
++ +++ E G N S GQ+Q V L R + I + D+ ++VD
Sbjct: 107 LPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHI 166
Query: 1420 -DNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSFS 1478
+N+I + + T I + H ++ + D+++++S G I E S ++LL +F+
Sbjct: 167 FENVIGP--KGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARD-GAFA 223
Query: 1479 QLVAEYTQRSS 1489
+ + Y
Sbjct: 224 EFLRTYASHHH 234
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 383 bits (985), Expect = e-111
Identities = 238/1293 (18%), Positives = 493/1293 (38%), Gaps = 145/1293 (11%)
Query: 292 IKAMFR-SVWKDVLLTALVAIVCTLA--------TYVGPYLIDTLVQY------------ 330
+ MFR + W D L V + + + + D+
Sbjct: 35 VLTMFRYAGWLDRLYML-VGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSE 93
Query: 331 ---LSGKRDFENEGYALVSAFC---VAKLVECLCQRFFVFRL-EQLGIRLRAALIAMIYN 383
+ E E + L+ Q F + ++R I
Sbjct: 94 ADKRAMFAKLEEEMTTYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAI-- 151
Query: 384 KGLKLSSQAKQGNTSGEIINFMTVDAERVAE-----LSWYIHDPWLFLFEVALSFLILYK 438
+ + GE+ +T D ++ E + + F + F +K
Sbjct: 152 --MNQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWK 209
Query: 439 -SLGIASVAAFFGTVIFMLVNVPLSTVQEKFQNELMKSKDERMKATSEILRNMRILKLQG 497
+L I +++ G + + + F ++ + + + E+L +R + G
Sbjct: 210 LTLVILAISPVLGLSAGIW-----AKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFG 264
Query: 498 WELKFLSK-TIDLRKSESGWLKRCLYTS---SITSFVFWCAPTFVSVITFGTCILLKVPL 553
+ K L + +L +++ +K+ + + + + + + +GT +++
Sbjct: 265 GQKKELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYAS--YALAFWYGTSLVISKEY 322
Query: 554 ESGKVLSA-----IATFRLLQILIYKLPAIISMTIQTKVSLQRIASFFCLDELQPDLVEK 608
G+VL+ I F + Q P I + + + + F + + +P +
Sbjct: 323 SIGQVLTVFFSVLIGAFSVGQAS----PNIEAFA-NARGAAYEV---FKIIDNKPSIDSF 374
Query: 609 QPRG----SSETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLS 664
G + + +E + +FS+ LK +NLKV G VA+ G G GKS+ +
Sbjct: 375 SKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQ 434
Query: 665 CILGEVPKISGTLKLCGTK-------------AYVAQSPWIQSGKIEDNILFGKE-MDRE 710
+ + G + + G V+Q P + + I +NI +G+E + +
Sbjct: 435 LMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMD 494
Query: 711 RYNAVLDACSLEKDLEILSF------GDQTVVGERGINLSGGQKQRIQIARALYQDADIY 764
+ A K+ F T+VGERG LSGGQKQRI IARAL ++ I
Sbjct: 495 E---IEKAV---KEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKIL 548
Query: 765 LFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGK 824
L D+ SA+D + + + L +T + + H++ + AD++ G I + G
Sbjct: 549 LLDEATSALDTES-EAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGN 607
Query: 825 YTDVINSGTDFMELVDAHKQALSTLDSIEGRPLSEKGSANGENDGTSATDGVVKEVENKE 884
+ +++ + +LV E ++ + S + + + K
Sbjct: 608 HDELMREKGIYFKLVMTQTAGNEIELGNEACKSKDEIDNLDMSSKDSGSSLIRRRSTRKS 667
Query: 885 VQNDREDKVAEPQRQLVQEEEREKGKV----EFSVYWKY-----ITAAYGGVLVP-FILL 934
+ + ++ + E+ S W Y A G L P F ++
Sbjct: 668 ICGPHDQDRKLSTKEALDEDVPPASFWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVI 727
Query: 935 AQTLFQILQIASNYWIAWATPASKDIKPRVTGSMLLIVFVALAFGSSFCILARSTLLATA 994
+ + T R ++ ++F+ L S + A
Sbjct: 728 FSKVVGVF-----------TNGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKA 776
Query: 995 GYKTATLLFNKMHYCIFRAPMSFFD--ATPSGRIINRASTDQSAVDLSIPALIGSFAFSI 1052
G L + + R +S+FD +G + R + D + V + + + +I
Sbjct: 777 GEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNI 836
Query: 1053 IRVLGVIGVMSLVAWQ---VFIVFIPVIATCIWYQQYYISSARELSRLVGVCKAPLIQHF 1109
+ I + + WQ + + +P+IA + +S + +
Sbjct: 837 ANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKE---LEGSGKIA 893
Query: 1110 AETVSGSTTIRSFDQESRFIDTNMELMDGYSRPTFHVA-AAMEWLGFRLDMLSNITFAFS 1168
E + T+ S +E +F + + R A F + ++A +
Sbjct: 894 TEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSF-TQAMMYFSYAAA 952
Query: 1169 LVF---LISIPKGFIDPA---IAGLAVTYGLTLNNLQAMLIWLACQMENKIISVERIFQY 1222
F L++ + + + A+ +G + A +S I +
Sbjct: 953 FRFGAYLVT--QQLMTFENVLLVFSAIVFGAMA---VGQVSSFAPDYAKATVSASHIIRI 1007
Query: 1223 TCIPSEPPLEIEESRPNHSWPSHGKIDLRDLQVRY--APHMPFVLRGISCTFPGEKKTGI 1280
I P ++ ++ G + + Y P +P VL+G+S + +
Sbjct: 1008 --IEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIP-VLQGLSLEVKKGQTLAL 1064
Query: 1281 VGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSIIPQDPVMFEGTVR 1340
VG +G GKST++Q L R +P AG + +DG +I + + LR +L I+ Q+P++F+ ++
Sbjct: 1065 VGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIA 1124
Query: 1341 SNV---DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGR 1397
N+ D + E+I A + + + K +++V + G S GQ+Q + + R
Sbjct: 1125 ENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIAR 1184
Query: 1398 VLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSH 1457
L+++ IL+LDEAT+++DT ++ ++Q++L + T I IAHR++++ ++D+++++ +
Sbjct: 1185 ALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQN 1244
Query: 1458 GLIEEYDSPRKLLENKSSSFSQLVAEYTQRSSS 1490
G ++E+ + ++LL K + +V+ S
Sbjct: 1245 GKVKEHGTHQQLLAQK-GIYFSMVSVQAGAKRS 1276
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 263 bits (674), Expect = 6e-76
Identities = 122/578 (21%), Positives = 229/578 (39%), Gaps = 43/578 (7%)
Query: 916 YWKYITAAYGGVLVPFILLAQTLF-QILQIASNYWIAWATPASKDIKPRVTGSMLLIVFV 974
Y I A ++ F + L +++ A + I + + +T + I
Sbjct: 12 YKYRIFATIIVGIIKFGI--PMLIPLLIKYAIDGVINNHALTTDEKVHHLTI-AIGIALF 68
Query: 975 ALAFGSSFCILARSTLLATAGYKTAT----LLFNKMHYCIFRAPMSFFDATPSGRIINRA 1030
R L K L+N + F+ G++I+R
Sbjct: 69 IFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQ----ALSARFYANNQVGQVISRV 124
Query: 1031 STDQSAVDLSIPALIGSFAFSIIRVLGVIGVMSLVAWQ---VFIVFIPVIATCIWYQQYY 1087
D I + + I ++ + +M + + + P ++
Sbjct: 125 INDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGR 184
Query: 1088 ISSARELSRLVGVCKAPLIQHFAETVSGSTTIRSFDQES----RFIDTNMELMDGYSRPT 1143
+ R+L+R A + E V G + ++SF E F N + + T
Sbjct: 185 L---RKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHT 241
Query: 1144 FHVAAAMEWLGFRLDMLSNITFAFSLVF-LISIPKGFIDPAIAGLAVTYGLTLNNLQA-- 1200
A + + +++I + G I G + L L
Sbjct: 242 RWNAYSFAAINT----VTDIGPIIVIGVGAYLAISGSITV---GTLAAFVGYLELLFGPL 294
Query: 1201 -MLIWLACQMENKIISVERIFQYTCIPSEPPLEIEESRPNHSWPSHGKIDLRDLQVRYAP 1259
L+ + S++R+FQ + E G+ID+ + +Y
Sbjct: 295 RRLVASFTTLTQSFASMDRVFQ---LIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYND 351
Query: 1260 HMPFVLRGISCTF-PGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGL 1318
+ +L+ I+ + GE VG +G GKSTLI + R + +GQILIDG +I
Sbjct: 352 NEAPILKDINLSIEKGET-VAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLT 410
Query: 1319 HDLRTRLSIIPQDPVMFEGTVRSNV---DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLD 1375
LR ++ ++ QD ++F TV+ N+ P TDE++ EA D + D
Sbjct: 411 GSLRNQIGLVQQDNILFSDTVKENILLGRP--TATDEEVVEAAKMANAHDFIMNLPQGYD 468
Query: 1376 SKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCT 1435
++V E G S GQ+Q + + R+ L IL+LDEAT+++D ++++IQ++L D T
Sbjct: 469 TEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRT 528
Query: 1436 VITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENK 1473
+ +AHR++++ +D ++++ +G I E + R+L+ +
Sbjct: 529 TLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQ 566
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 150 bits (380), Expect = 1e-37
Identities = 119/578 (20%), Positives = 217/578 (37%), Gaps = 87/578 (15%)
Query: 300 WKDVLLTALVAIVCTLATYVGPYLIDTLVQYLSGKRDFENEG------YALVSAFCVAKL 353
+ T +V I+ + P LI + + + A+ A + +
Sbjct: 13 KYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVI 72
Query: 354 VECLCQRFFVFRLEQLGIRLRAALIAMIYNKGLKLSSQAKQGNTSGEIINFMTVDAERVA 413
V + + + ++ + +YN LS++ N G++I+ + D E+
Sbjct: 73 VRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTK 132
Query: 414 ELSWYIHDPWLFLFEVALSFLILYKSLGIASVAAFFGTVIFM-----------LVNVPLS 462
+ F+ ++ + + M L P
Sbjct: 133 D----------FILTGLMNIWL--------DCITIIIALSIMFFLDVKLTLAALFIFPFY 174
Query: 463 TVQEKFQNELMK--SKDERMK------ATSEILRNMRILKLQGWE----LKFLSKTIDLR 510
+ ++ +++ E ++ + ++K E F K +
Sbjct: 175 ILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFL 234
Query: 511 KSESGWLKRCLYTSSITSFV-FWCAPTFVSVITFGTCILLKVPLESGKVLSAIATFRLLQ 569
LK + + + + + VI G + + + G + + + LL
Sbjct: 235 TR---ALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLF 291
Query: 570 ILIYKLPAIISMTIQTKVSLQRIASFFCLDELQPDLVEK---QPRGSSETAIEIADGNFS 626
+ +L A + Q+ S+ R+ F +DE D+ QP + I+I +F
Sbjct: 292 GPLRRLVASFTTLTQSFASMDRV--FQLIDE-DYDIKNGVGAQPIEIKQGRIDIDHVSFQ 348
Query: 627 WDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCIL-------GEVPKISG---- 675
++ + P LKDINL + G VA G G GKS+L++ I G++ I G
Sbjct: 349 YN-DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQI-LIDGHNIK 406
Query: 676 --TLK-LCGTKAYVAQSPWIQSGKIEDNILFGK-EMDRERYNAVLDACSLEKDLEILSF- 730
L V Q + S +++NIL G+ E V++A K F
Sbjct: 407 DFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEE---VVEAA---KMANAHDFI 460
Query: 731 -----GDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEV 785
G T VGERG+ LSGGQKQR+ IAR + I + D+ SA+D + + +E
Sbjct: 461 MNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLES-ESIIQEA 519
Query: 786 LLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAG 823
L L +T L V H++ + AD ++VI++G I + G
Sbjct: 520 LDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETG 557
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 262 bits (671), Expect = 2e-75
Identities = 114/518 (22%), Positives = 218/518 (42%), Gaps = 48/518 (9%)
Query: 968 MLLIVFVALAFGSSFCILARSTLLATAGYKTATLLFNKMHYCIFRAPMSFFDATPSGRII 1027
+ +V + L S ++ K + ++ + P++FFD +G ++
Sbjct: 66 WMPLVVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLL 125
Query: 1028 NRASTDQSAVDLSIPALIGSFAFSIIRVLGVIGVMSLVAWQ---VFIVFIPVIATCIWYQ 1084
+R + D V S + + ++G+ +M +WQ + +V P+++
Sbjct: 126 SRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVS---IAI 182
Query: 1085 QYYISSARELSRLVGVCKAPLIQHFAETVSGSTTIRSFDQE----SRFIDTNMELMDGYS 1140
+ R +S+ + + + + G + F + RF + ++
Sbjct: 183 RVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKM----- 237
Query: 1141 RPTFHVAAAMEWLGFRLDMLSNITFAFSLVFLISIPKGFIDPAIAGLAVTYG-LTLNNLQ 1199
M D + + + +L F++ A LT +
Sbjct: 238 ---RLQGMKMVSASSISDPIIQLIASLALAFVL---------YAASFPSVMDSLTAGTIT 285
Query: 1200 A-------------MLIWLACQMENKIISVERIFQYTCIPSEPPLEIEESRPNHSWPSHG 1246
L + Q + + + + +F I E +E + G
Sbjct: 286 VVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFA---ILDSEQ-EKDEG-KRVIDRATG 340
Query: 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQI 1306
++ R++ Y LR I+ P K +VGR+GSGKST+ + R + G I
Sbjct: 341 DLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHI 400
Query: 1307 LIDGIDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNV--DPLEEYTDEQIWEALDKCQLG 1364
L+DG D+ L LR +++++ Q+ +F TV +N+ EEY+ EQI EA
Sbjct: 401 LMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAM 460
Query: 1365 DEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQ 1424
D + K + LD+ + ENG S GQRQ + + R LL+ IL+LDEAT+++DT ++ IQ
Sbjct: 461 DFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQ 520
Query: 1425 QSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 1462
+L + + T + IAHR++++ +D ++++ G+I E
Sbjct: 521 AALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVE 558
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 155 bits (393), Expect = 2e-39
Identities = 108/571 (18%), Positives = 238/571 (41%), Gaps = 47/571 (8%)
Query: 284 SGLTTLKLIKAMFRSVWKDVLLTALVAIVCTLATYVGPYLIDTLVQYLSGKRDFENEGYA 343
S T + + +++ + I+ + L+ L+ GK D +
Sbjct: 8 STWQTFRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWM 67
Query: 344 LVSAFCVAKLVECLCQRFFVFRLEQLGIRLRAALIAMIYNKGLKLSSQAKQGNTSGEIIN 403
+ + ++ + + + + ++ + ++ + + ++G +++
Sbjct: 68 PLVVIGLM-ILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLS 126
Query: 404 FMTVDAERVAE-----LSWYIHDPWLFLFEVALSFLILYKSLGIASVAAFFGTVIFMLVN 458
+T D+E+VA L + + + L ++ Y S ++ + V+ +V+
Sbjct: 127 RITYDSEQVASSSSGALITVVREGASI---IGLFIMMFYYSWQLSIILV----VLAPIVS 179
Query: 459 VPLSTVQEKFQN---ELMKSKDERMKATSEILRNMRILKL---QGWEL-KFLSKTIDLRK 511
+ + V ++F++ + + + + ++L+ + + + Q E +F + +R
Sbjct: 180 IAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRL 239
Query: 512 SESGWLKRCLYTSSITSFV-FWCAPTFVSVITFGTCILLKVPLESGKVLSAIATFRLLQI 570
+K +S + + V+ + + L +G + ++ L
Sbjct: 240 Q---GMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMR 296
Query: 571 LIYKLPAIISMTIQTKVSLQRIASFFCLDELQPDLVE-KQPRGSSETAIEIADGNFSWDI 629
+ L + + + + Q + F LD + + E K+ + +E + F++
Sbjct: 297 PLKSLTNVNAQFQRGMAACQTL--FAILDS-EQEKDEGKRVIDRATGDLEFRNVTFTYP- 352
Query: 630 SSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCIL-------GEVPKISG------T 676
P L++INLK+ G VA+ G GSGKS++ S I G + + G T
Sbjct: 353 GREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHI-LMDGHDLREYT 411
Query: 677 LK-LCGTKAYVAQSPWIQSGKIEDNILFGK--EMDRERYNAVLDACSLEKDLEILSFGDQ 733
L L A V+Q+ + + + +NI + + E RE+ + + G
Sbjct: 412 LASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLD 471
Query: 734 TVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSK 793
T++GE G+ LSGGQ+QRI IARAL +D+ I + D+ SA+D + + L L ++
Sbjct: 472 TIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTES-ERAIQAALDELQKNR 530
Query: 794 TVLYVTHQVEFLPAADLVLVIKDGKITQAGK 824
T L + H++ + AD ++V++DG I + G
Sbjct: 531 TSLVIAHRLSTIEQADEIVVVEDGIIVERGT 561
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 260 bits (667), Expect = 5e-75
Identities = 119/584 (20%), Positives = 230/584 (39%), Gaps = 63/584 (10%)
Query: 916 YWKYITAAYGGVLVPFILLAQTLFQILQIASNYWIAWATPASKDIKPRVTGSMLLIVFVA 975
Y + + + ++ A + +L + +
Sbjct: 23 YKAGLVVS----TIALVINA-----AADTYMISLLKPLLDEGFGNAESNFLRILPFMILG 73
Query: 976 LAFGSSFCILARSTLLATAGYKTATLLFNKMHYCIFRAPMSFFDATPSGRIINRASTDQS 1035
L F A S L+ + ++ P+ FFD +G +++R + D
Sbjct: 74 LMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSE 133
Query: 1036 AVDLSIPALIGSFAFSIIRVLGVIGVMSLVAWQ---VFIVFIPVIATCIWYQQYYISSAR 1092
V + + S ++G++ +M +WQ V IV PV+A + + R
Sbjct: 134 QVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVA---FAISFVSKRFR 190
Query: 1093 ELSRLVGVCKAPLIQHFAETVSGSTTIRSFDQE----SRFIDTNMELMDGYSRPTFHVAA 1148
++SR + + + + G + S+ + RF + + + +
Sbjct: 191 KISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSI 250
Query: 1149 AMEWLGFRLDMLSNITFAFSLVFLISIPKGFIDPAIAGLAVTYG-LTLNNLQA------- 1200
A + + + +L ++ +A + LT
Sbjct: 251 AD--------PVIQMIASLALFAVL---------FLASVDSIRAELTPGTFTVVFSAMFG 293
Query: 1201 ------MLIWLACQMENKIISVERIFQYTCIPSEP---PLEIEESRPNHSWPSHGKIDLR 1251
L + + + + + + +F + +E E E G++D++
Sbjct: 294 LMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERDNGKYEAERVN--------GEVDVK 345
Query: 1252 DLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGI 1311
D+ Y L +S + P K +VGR+GSGKST+ R + +G I +DG
Sbjct: 346 DVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGH 405
Query: 1312 DISLIGLHDLRTRLSIIPQDPVMFEGTVRSNV--DPLEEYTDEQIWEALDKCQLGDEVRK 1369
D+ L +LR +++ Q+ +F T+ +N+ EYT EQI +A + + +
Sbjct: 406 DVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIEN 465
Query: 1370 KEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQ 1429
LD+ + ENG + S GQRQ V + R LL+ +L+LDEAT+++DT ++ IQ +L +
Sbjct: 466 MPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDE 525
Query: 1430 HFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENK 1473
+ TV+ IAHR++++ +D +L++ G I E LL
Sbjct: 526 LQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQD 569
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 156 bits (398), Expect = 5e-40
Identities = 109/571 (19%), Positives = 229/571 (40%), Gaps = 47/571 (8%)
Query: 284 SGLTTLKLIKAMFRSVWKDVLLTALVAIVCTLATYVGPYLIDTLVQYLSGKRDFENEGYA 343
S T K + R ++++ + ++ A L+ L+ G +
Sbjct: 8 SNWQTFKRLWTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAESNFLRIL 67
Query: 344 LVSAFCVAKLVECLCQRFFVFRLEQLGIRLRAALIAMIYNKGLKLSSQAKQGNTSGEIIN 403
+ V L + L + + + ++N + + + ++G +++
Sbjct: 68 PFMILGLM-FVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLS 126
Query: 404 FMTVDAERVAELSWYIHDPWLFLFE-----VALSFLILYKSLGIASVAAFFGTVIFMLVN 458
+T D+E+VA + + + L L+ + S ++ V V+ +V
Sbjct: 127 RITYDSEQVAGA---TSRALVSIVREGASIIGLLTLMFWNSWQLSLVLI----VVAPVVA 179
Query: 459 VPLSTVQEKFQN---ELMKSKDERMKATSEILRNMRILKL---QGWEL-KFLSKTIDLRK 511
+S V ++F+ + + + ++L+ +++ Q E +F + +R+
Sbjct: 180 FAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQ 239
Query: 512 SESGWLKRCLYTSSITSFV-FWCAPTFVSVITFGTCILLKVPLESGKVLSAIATFRLLQI 570
+K S + + +V+ + ++ L G + L
Sbjct: 240 Q---TMKLVSAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMR 296
Query: 571 LIYKLPAIISMTIQTKVSLQRIASFFCLDELQPDLVE-KQPRGSSETAIEIADGNFSWDI 629
+ L ++ S + + Q + F +D + + K +++ D F++
Sbjct: 297 PLKALTSVTSEFQRGMAACQTL--FGLMDL-ETERDNGKYEAERVNGEVDVKDVTFTYQ- 352
Query: 630 SSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCIL-------GEVPKISG------T 676
P L ++ + G VA+ G GSGKS++ + G + + G
Sbjct: 353 GKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSI-CLDGHDVRDYK 411
Query: 677 LK-LCGTKAYVAQSPWIQSGKIEDNILFGKEMD--RERYNAVLDACSLEKDLEILSFGDQ 733
L L A V+Q+ + + I +NI + E + RE+ + +E + G
Sbjct: 412 LTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLD 471
Query: 734 TVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSK 793
TV+GE G +LSGGQ+QR+ IARAL +DA + + D+ SA+D + + L L +K
Sbjct: 472 TVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTES-ERAIQAALDELQKNK 530
Query: 794 TVLYVTHQVEFLPAADLVLVIKDGKITQAGK 824
TVL + H++ + AD +LV+ +G+I + G+
Sbjct: 531 TVLVIAHRLSTIEQADEILVVDEGEIIERGR 561
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 257 bits (658), Expect = 1e-73
Identities = 153/616 (24%), Positives = 261/616 (42%), Gaps = 96/616 (15%)
Query: 917 WKYITAAYGGVLVPFILLAQTLFQILQIASNYWIAWATPASKDIKPRVTGSM--LLIVFV 974
Y+ + L+ + T+ IL + S Y I PR + +++
Sbjct: 29 LGYL-RPHTFTLIMVFVFV-TVSSILGVLSPYLIGKTI--DVVFVPRRFDLLPRYMLILG 84
Query: 975 ALAFGSSFCILARSTLLATAGYKTA----TLLFNKMHYCIFRAPMSFFDATPSGRIINRA 1030
+ +S + ++ T LF K+ R P+ FFD TP G II+R
Sbjct: 85 TIYALTSLLFWLQGKIMLTLSQDVVFRLRKELFEKLQ----RVPVGFFDRTPHGDIISRV 140
Query: 1031 STD----QSAVDLSIPALIGSFAFSIIRVLGVIGVMSLVAWQ---VFIVFIPVIATCIWY 1083
D + + SI I+ + G + +M V V + +P+
Sbjct: 141 INDVDNINNVLGNSIIQFFSG----IVTLAGAVIMMFRVNVILSLVTLSIVPLTVLITQI 196
Query: 1084 -----QQYYISSARELSRLVGVCKAPLIQHFAETVSGSTTIRSFDQE----SRFIDTNME 1134
++Y+ + R L +L G E +SG T I+ F +E +F N
Sbjct: 197 VSSQTRKYFYENQRVLGQLNG--------IIEEDISGLTVIKLFTREEKEMEKFDRVNES 248
Query: 1135 LMDGYSRPTFHVAAAMEWLGFRLDMLSNITFAFSLVFLISIPKGFIDPAIAGLAVTYGLT 1194
L ++ + ++N+ FA F G LA+ +T
Sbjct: 249 LRKVGTKAQIFSGVLPPLMNM----VNNLGFALISGF------G------GWLALKDIIT 292
Query: 1195 LNNLQAMLIW----------LACQMENKIIS----VERIFQYTCIPSEPPLEIEESRPNH 1240
+ + + + L+ N I ERIF+ I E ++
Sbjct: 293 VGTIATFIGYSRQFTRPLNELS-NQFNMIQMALASAERIFE---ILDLEE-EKDDPDAVE 347
Query: 1241 SWPSHGKIDLRDLQVRYAPHMPFVLRGISCTF-PGEKKTGIVGRTGSGKSTLIQTLFRIV 1299
G+I+ +++ Y P VL+ I+ PG+K +VG TGSGK+T++ L R
Sbjct: 348 LREVRGEIEFKNVWFSYDKKKP-VLKDITFHIKPGQK-VALVGPTGSGKTTIVNLLMRFY 405
Query: 1300 EPAAGQILIDGIDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNVDPLEEY-----TDEQI 1354
+ GQIL+DGIDI I LR+ + I+ QD ++F TV+ N+ +Y TDE+I
Sbjct: 406 DVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENL----KYGNPGATDEEI 461
Query: 1355 WEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATAS 1414
EA ++ ++ +T+NGE+ S GQRQL+ + R L KIL+LDEAT++
Sbjct: 462 KEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSN 521
Query: 1415 VDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENK- 1473
VDT T+ IQ ++ + T I IAHR+ ++ ++D++++L G I E +L++ +
Sbjct: 522 VDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQKRG 581
Query: 1474 ------SSSFSQLVAE 1483
+S + +V +
Sbjct: 582 FYYELFTSQYGLVVEK 597
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 2e-22
Identities = 119/602 (19%), Positives = 221/602 (36%), Gaps = 120/602 (19%)
Query: 288 TLKLIKAMFRSVWKDVLLTALVAIVCTLATYVGPYLIDTLVQYLSGKRDFENEGYALVSA 347
TL+ + R +++ + V ++ + PYLI + + R F+ ++
Sbjct: 24 TLRRLLGYLRPHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRRFDLLPRYMLIL 83
Query: 348 FCVAKLVECLCQRFFVFRLEQLGIRLRAALIAMIYNKGLKLSSQAKQGNTSGEIINFMTV 407
+ + L + L + L ++ K ++ G+II+ +
Sbjct: 84 GTIY-ALTSLLFWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDRTPHGDIISRVIN 142
Query: 408 DAERVAELSWYIHDPWLFLFEVALSFLILYKSLG--IASVAAFFGTVIFML--------- 456
D + + + L S+ + + G VI M
Sbjct: 143 DVDNINNV--------------------LGNSIIQFFSGIVTLAGAVIMMFRVNVILSLV 182
Query: 457 --VNVPLSTV---------QEKFQNELMKSKDERMKATS-------EILRNMRILKLQGW 498
VPL+ + ++ F E + E + + ++KL
Sbjct: 183 TLSIVPLTVLITQIVSSQTRKYFY--------ENQRVLGQLNGIIEEDISGLTVIKLFTR 234
Query: 499 E----LKFLSKTIDLRKSESGWLKRCLYTSSI---TSFVFWCAPTFVSVITFGTCILLKV 551
E KF LRK K +++ + + V F + FG + LK
Sbjct: 235 EEKEMEKFDRVNESLRKV---GTKAQIFSGVLPPLMNMV--NNLGFALISGFGGWLALKD 289
Query: 552 PLESGKVLSAIATFRLLQILIYKLPAIISMTIQTKVSLQRIASFFCLDELQPDLVEKQPR 611
+ G + + I R + +L +M S +RI F LD + + +
Sbjct: 290 IITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERI--FEILDL-EEEKDDPDAV 346
Query: 612 GSSET--AIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILG- 668
E IE + FS+D P LKDI + G +VA+ G GSGK+++++ ++
Sbjct: 347 ELREVRGEIEFKNVWFSYD--KKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRF 404
Query: 669 -EVPKISGTLKLCGTK-------------AYVAQSPWIQSGKIEDNILFGKE--MDRERY 712
+V G + + G V Q + S +++N+ +G D E
Sbjct: 405 YDVD--RGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEE-- 460
Query: 713 NAVLDACSLEKDLEILSF------GDQTVVGERGINLSGGQKQRIQIARALYQDADIYLF 766
+ +A K F G +TV+ + G +LS GQ+Q + I RA + I +
Sbjct: 461 --IKEAA---KLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILIL 515
Query: 767 DDPFSAVDAHTGSHLFKEVLL-----GLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQ 821
D+ S VD T E + L+ KT + + H++ + ADL++V++DG+I +
Sbjct: 516 DEATSNVDTKT------EKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVE 569
Query: 822 AG 823
G
Sbjct: 570 MG 571
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 229 bits (586), Expect = 3e-64
Identities = 130/588 (22%), Positives = 246/588 (41%), Gaps = 72/588 (12%)
Query: 916 YWKYITAAYGGVLVPFILLAQTLFQILQIASNYWIAWATPASKDIKP--RVTGSMLLIVF 973
YW + VL P ++ + + + Q I A D + ML++
Sbjct: 21 YWIFA------VLAPLFMVVEVICDLSQPTLLARIVDEGIARGDFSLVLKTGILMLIVAL 74
Query: 974 VALAFGSSFCILARSTLLATAGYKTATLLFNKMHYCIFRAPMSF----FDATPSGRIINR 1029
+ G + A + A L + FR +SF + + +I R
Sbjct: 75 IGAVGGIGCTVFA-----SYASQNFGADLRRDL----FRKVLSFSISNVNRFHTSSLITR 125
Query: 1030 ASTD----QSAVDLSIPALIGS---FAFSIIRVLGVIGVMSLVAWQVFIVFIPVIATCIW 1082
+ D Q+ V + + ++ + F I+ + + +S V I IP I
Sbjct: 126 LTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSV----LIFLIPPIVLLFV 181
Query: 1083 Y-----QQYYISSARELSRLVGVCKAPLIQHFAETVSGSTTIRSFDQE----SRFIDTNM 1133
+ + + V + E + G +R+F +E F N
Sbjct: 182 WLTKKGNPLFRKIQESTDEVNRVVR--------ENLLGVRVVRAFRREEYENENFRKANE 233
Query: 1134 ELMDGYSRPTFHVAAAMEWLGFRLDMLSNITFAFSLVF-LISIPKGFIDPAIAGLA--VT 1190
L + + + + N+ L F + + ++ I +
Sbjct: 234 SLRRSIIS----AFSLIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQME--IGSIMAYTN 287
Query: 1191 YGL-TLNNLQAMLIWLACQMENKIISVERIFQYTCIPSEPPLEIEESRPNHSWPSHGKID 1249
Y + + +L M+ + + S +R+ + + +E P E G +
Sbjct: 288 YLMQIMFSL-MMIGNILNFIVRASASAKRVLE---VLNEKPAIEEADNALALPNVEGSVS 343
Query: 1250 LRDLQVRYAPHMPFVLRGISCTF-PGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILI 1308
+++ RY + VL G++ + PG ++G TGSGKSTL+ + R+++P G++ +
Sbjct: 344 FENVEFRYFENTDPVLSGVNFSVKPGSL-VAVLGETGSGKSTLMNLIPRLIDPERGRVEV 402
Query: 1309 DGIDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNVDPL----EEYTDEQIWEALDKCQLG 1364
D +D+ + L DLR +S +PQ+ V+F GT++ N L E+ TD++I EA Q+
Sbjct: 403 DELDVRTVKLKDLRGHISAVPQETVLFSGTIKEN---LKWGREDATDDEIVEAAKIAQIH 459
Query: 1365 DEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQ 1424
D + DS+V G N+S GQ+Q + + R L+K+ K+L+LD+ T+SVD T+ I
Sbjct: 460 DFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRIL 519
Query: 1425 QSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLEN 1472
L+++ CT I +I + + +D +L+L G + + + ++LLE+
Sbjct: 520 DGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEH 567
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 152 bits (387), Expect = 1e-38
Identities = 133/583 (22%), Positives = 228/583 (39%), Gaps = 80/583 (13%)
Query: 289 LKLIKAMFRSVWKDVLLTALVAIVCTLATYVGPYLIDTLVQYLSGKRDFE---NEGYALV 345
K + + W +L L +V + P L+ +V + DF G ++
Sbjct: 11 SKTLARYLKPYWIFAVLAPLFMVVEVICDLSQPTLLARIVDEGIARGDFSLVLKTGILML 70
Query: 346 SAFCVAKLVECLCQRFFVFRLEQ-LGIRLRAALIAMIYNKGLKLSSQAKQGNTSGEIINF 404
+ V + F Q G LR L + K L S + +I
Sbjct: 71 -IVALIGAVGGIGCTVFASYASQNFGADLRRDL----FRKVLSFSISNVNRFHTSSLITR 125
Query: 405 MTVDAERVAE-----LSWYIHDPWLFLFEVALSFLILYK-SLGIASVAAFFGTVIF--ML 456
+T D ++ L + P LF+ + ++ I K S + + +
Sbjct: 126 LTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIFLIPPIVLLFVWLTK 185
Query: 457 VNVPLSTVQEKFQNELMKSKDERMKATSEILRNMRILKL---QGWEL-KFLSKTIDLRKS 512
PL K Q DE + E L +R+++ + +E F LR+S
Sbjct: 186 KGNPLF---RKIQEST----DEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRS 238
Query: 513 ESGWLKRCLYTSSITSFVFWCAPTF--------VSVITFGTCILLKVPLESGKVLSAIAT 564
+ S+ F P F ++V+ FG ++ +E G +++
Sbjct: 239 I-------ISAFSLIVFAL---PLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNY 288
Query: 565 FRLLQILIY--KLPAIISMTIQTKVSLQRIASFFCLDELQPDLVEK---QPRGSSETAIE 619
L+QI+ + I++ ++ S +R+ L+E +P + E + E ++
Sbjct: 289 --LMQIMFSLMMIGNILNFIVRASASAKRVLE--VLNE-KPAIEEADNALALPNVEGSVS 343
Query: 620 IADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCIL-------GEVPK 672
+ F + + +P L +N V G VAV G GSGKS+L++ I G V +
Sbjct: 344 FENVEFRYF-ENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRV-E 401
Query: 673 ISG------TLK-LCGTKAYVAQSPWIQSGKIEDNILFGKEM--DRERYNAVLDACSLEK 723
+ LK L G + V Q + SG I++N+ +G+E D E A A +
Sbjct: 402 VDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDF 461
Query: 724 DLEILSFGDQ--TVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHL 781
I+S + + V G N SGGQKQR+ IARAL + + + DD S+VD T +
Sbjct: 462 ---IISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRI 518
Query: 782 FKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGK 824
+ L T +T ++ AD +LV+ +GK+ G
Sbjct: 519 -LDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGT 560
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 201 bits (514), Expect = 1e-58
Identities = 77/240 (32%), Positives = 134/240 (55%), Gaps = 5/240 (2%)
Query: 1245 HGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAG 1304
H I R+++ RY P P +L I+ + + GIVGR+GSGKSTL + + R P G
Sbjct: 5 HHDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 1305 QILIDGIDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNV---DPLEEYTDEQIWEALDKC 1361
Q+LIDG D++L + LR ++ ++ QD V+ ++ N+ +P + E++ A
Sbjct: 65 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP--GMSVEKVIYAAKLA 122
Query: 1362 QLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDN 1421
D + + ++ V E G S GQRQ + + R L+ KIL+ DEAT+++D +++
Sbjct: 123 GAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEH 182
Query: 1422 LIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSFSQLV 1481
+I +++ + TVI IAHR+++V ++D ++++ G I E ++LL S +S L
Sbjct: 183 VIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLY 242
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 4e-31
Identities = 69/225 (30%), Positives = 104/225 (46%), Gaps = 24/225 (10%)
Query: 617 AIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCIL-------GE 669
I + F + L +INL + G + + G GSGKS+L I G+
Sbjct: 7 DITFRNIRFRYK-PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65
Query: 670 VPKISGT-LKLCGTK------AYVAQSPWIQSGKIEDNILFGKE-MDRERYNAVLDACSL 721
V I G L L V Q + + I DNI M E+ V+ A L
Sbjct: 66 V-LIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEK---VIYAAKL 121
Query: 722 EKDLE-ILSF--GDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTG 778
+ I G T+VGE+G LSGGQ+QRI IARAL + I +FD+ SA+D +
Sbjct: 122 AGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYES- 180
Query: 779 SHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAG 823
H+ + + +TV+ + H++ + AD ++V++ GKI + G
Sbjct: 181 EHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQG 225
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 200 bits (511), Expect = 2e-57
Identities = 78/268 (29%), Positives = 140/268 (52%), Gaps = 17/268 (6%)
Query: 1213 IISVERIFQYTCIPSEPPLEIEESRPNHS--WPSHGKIDLRDLQVRYAPHMPFVLRGISC 1270
I +E +F + E E+++ P G+I+ ++ YA L+ +S
Sbjct: 22 FIDMENMFD---LLKEET-EVKD-LPGAGPLRFQKGRIEFENVHFSYADGRE-TLQDVSF 75
Query: 1271 TFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSIIPQ 1330
T + +VG +G+GKST+++ LFR + ++G I IDG DIS + LR+ + ++PQ
Sbjct: 76 TVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQ 135
Query: 1331 DPVMFEGTVRSNVDPLEEY-----TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENW 1385
D V+F T+ N+ Y ++++ A + D + ++V E G
Sbjct: 136 DTVLFNDTIADNI----RYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKL 191
Query: 1386 SMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITS 1445
S G++Q V + R +LK I++LDEAT+++DT+ + IQ SL + ++ T I +AHR+++
Sbjct: 192 SGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLST 251
Query: 1446 VIDSDMVLLLSHGLIEEYDSPRKLLENK 1473
V+++D +L++ G I E LL
Sbjct: 252 VVNADQILVIKDGCIVERGRHEALLSRG 279
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 128 bits (323), Expect = 2e-32
Identities = 74/266 (27%), Positives = 127/266 (47%), Gaps = 28/266 (10%)
Query: 588 SLQRIASFFCLDELQPDLVEK---QPRGSSETAIEIADGNFSWDISSHNPTLKDINLKVF 644
+ + F L + + ++ + P + IE + +FS+ TL+D++ V
Sbjct: 21 MFIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYA--DGRETLQDVSFTVM 78
Query: 645 HGMRVAVCGTVGSGKSSLLSCIL-------GEVPKISG------TLK-LCGTKAYVAQSP 690
G +A+ G G+GKS++L + G + +I G T L V Q
Sbjct: 79 PGQTLALVGPSGAGKSTILRLLFRFYDISSGCI-RIDGQDISQVTQASLRSHIGVVPQDT 137
Query: 691 WIQSGKIEDNILFGKE--MDRERYNAVLDACSLEKDLEILSF--GDQTVVGERGINLSGG 746
+ + I DNI +G+ + E A A + I++F G +T VGERG+ LSGG
Sbjct: 138 VLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDA---IMAFPEGYRTQVGERGLKLSGG 194
Query: 747 QKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLP 806
+KQR+ IAR + + I L D+ SA+D + L + ++T + V H++ +
Sbjct: 195 EKQRVAIARTILKAPGIILLDEATSALDTSN-ERAIQASLAKVCANRTTIVVAHRLSTVV 253
Query: 807 AADLVLVIKDGKITQAGKYTDVINSG 832
AD +LVIKDG I + G++ +++ G
Sbjct: 254 NADQILVIKDGCIVERGRHEALLSRG 279
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 197 bits (504), Expect = 3e-57
Identities = 74/228 (32%), Positives = 119/228 (52%), Gaps = 3/228 (1%)
Query: 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1307
+ R + Y +LR IS G +G GKST+ L R +P AG+I
Sbjct: 2 LSARHVDFAYDDSEQ-ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT 60
Query: 1308 IDGIDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNVD--PLEEYTDEQIWEALDKCQLGD 1365
IDG I I L + R+++ + QD + GT+R N+ +YTDE +W+ LD
Sbjct: 61 IDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARS 120
Query: 1366 EVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQ 1425
V +L+++V E G S GQRQ + + R L+ KILMLDEATAS+D+ +++++Q+
Sbjct: 121 FVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQK 180
Query: 1426 SLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENK 1473
+L T + IAHR+++++D+D + + G I +L+
Sbjct: 181 ALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATH 228
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 127 bits (323), Expect = 4e-33
Identities = 64/239 (26%), Positives = 119/239 (49%), Gaps = 20/239 (8%)
Query: 618 IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCIL-------GEV 670
+ +F++D L+DI+ + +A G G GKS++ S + GE+
Sbjct: 2 LSARHVDFAYD--DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 671 PKISG------TLK-LCGTKAYVAQSPWIQSGKIEDNILFGKEMD--RERYNAVLDACSL 721
I G +L+ +V+Q I +G I +N+ +G E D E VLD
Sbjct: 60 -TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFA 118
Query: 722 EKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHL 781
+E + T VGERG+ +SGGQ+QR+ IARA ++ I + D+ +++D+ + +
Sbjct: 119 RSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSES-ESM 177
Query: 782 FKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVINSGTDFMELVD 840
++ L L+ +T L + H++ + AD + I+ G+IT +GK+ +++ + + + V
Sbjct: 178 VQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVS 236
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 186 bits (474), Expect = 4e-53
Identities = 73/234 (31%), Positives = 126/234 (53%), Gaps = 11/234 (4%)
Query: 1246 GKIDLRDLQVRYAPHMPF-VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAG 1304
I+ D+ Y L+ I+ P +VG TGSGKST+ + L+R + G
Sbjct: 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAE-G 74
Query: 1305 QILIDGIDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNVDPLEEY-----TDEQIWEALD 1359
I I G +++ + +R+ + I+PQD ++F T++ N+ Y TDE++ +A
Sbjct: 75 DIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNI----LYGKLDATDEEVIKATK 130
Query: 1360 KCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTAT 1419
QL D + K D+ V G S G+RQ + + R LLK KI++ DEAT+S+D+ T
Sbjct: 131 SAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKT 190
Query: 1420 DNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENK 1473
+ L Q+++ + T+I IAHR++++ ++ ++LL+ G I E + + LL+
Sbjct: 191 EYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLN 244
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 2e-32
Identities = 70/254 (27%), Positives = 126/254 (49%), Gaps = 22/254 (8%)
Query: 604 DLVEKQPRGSSETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLL 663
IE +D NFS+ +++ TLK IN + G A+ G GSGKS++
Sbjct: 4 SFSLTSHEKKFGVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIA 63
Query: 664 SCIL------GEVPKISG------TLK-LCGTKAYVAQSPWIQSGKIEDNILFGKE--MD 708
+ G++ KI G + V Q + + I+ NIL+GK D
Sbjct: 64 KLLYRFYDAEGDI-KIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATD 122
Query: 709 RERYNAVLDACSLEKDLEILSF--GDQTVVGERGINLSGGQKQRIQIARALYQDADIYLF 766
E A A + I + T+VG +G+ LSGG++QRI IAR L +D I +F
Sbjct: 123 EEVIKATKSAQLYDF---IEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIF 179
Query: 767 DDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYT 826
D+ S++D+ T +LF++ + L ++T++ + H++ + +A+ ++++ GKI + G +
Sbjct: 180 DEATSSLDSKT-EYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHK 238
Query: 827 DVINSGTDFMELVD 840
D++ ++ E+ +
Sbjct: 239 DLLKLNGEYAEMWN 252
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 168 bits (429), Expect = 6e-47
Identities = 69/257 (26%), Positives = 127/257 (49%), Gaps = 10/257 (3%)
Query: 1245 HGKIDLRDLQVRYA--PHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPA 1302
G + +D+ Y P++ VL+G++ T K T +VG GSGKST+ L + +P
Sbjct: 14 KGLVKFQDVSFAYPNHPNVQ-VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT 72
Query: 1303 AGQILIDGIDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNVD--PLEEYTDEQIWEALDK 1360
G++L+DG + H L T+++ + Q+P++F + R N+ T E+I +
Sbjct: 73 GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAME 132
Query: 1361 CQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATD 1420
D + D++V E G S GQRQ V L R L+++ ++L+LD AT+++D
Sbjct: 133 SGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQ 192
Query: 1421 NLIQQSLRQ--HFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSFS 1478
+Q+ L + ++ TV+ I +++ + +L L G + E + +L+E +
Sbjct: 193 LRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERG-GCYR 251
Query: 1479 QLVAEYTQRSSSSLAGN 1495
+V + S A +
Sbjct: 252 SMVE--ALAAPSDAAAH 266
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 2e-30
Identities = 59/247 (23%), Positives = 105/247 (42%), Gaps = 22/247 (8%)
Query: 618 IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTL 677
++ D +F++ + L+ + ++ G A+ G GSGKS++ + + G +
Sbjct: 17 VKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKV 76
Query: 678 KLCGTK-------------AYVAQSPWIQSGKIEDNILFGKEMDRERYNAVLDACSLEKD 724
L G A V Q P + +NI +G +
Sbjct: 77 LLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTM-EEITAVAMESGA 135
Query: 725 LE-ILSF--GDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGS-H 780
+ I F G T VGE G LSGGQ+Q + +ARAL + + + D+ SA+DA +
Sbjct: 136 HDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAG--NQL 193
Query: 781 LFKEVL--LGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVINSGTDFMEL 838
+ +L S+TVL +T Q+ A +L +K+G + + G + ++ G + +
Sbjct: 194 RVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRSM 253
Query: 839 VDAHKQA 845
V+A
Sbjct: 254 VEALAAP 260
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 127 bits (322), Expect = 1e-32
Identities = 57/255 (22%), Positives = 105/255 (41%), Gaps = 56/255 (21%)
Query: 614 SETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKI 673
S I++ LK I+ ++ G + + G G+GK++LL+ + P
Sbjct: 18 SHMLIQLDQIGRMKQ---GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT 74
Query: 674 SGTLKLCGTK---------------AYVAQS---PWIQSGKIEDNILFGK---------- 705
SGT+ L G +V+ S + + ++ D ++ G
Sbjct: 75 SGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDI 134
Query: 706 -EMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIY 764
+ R + +L + + + Q + LS G+KQR+ IARAL +
Sbjct: 135 DDEIRNEAHQLLKL------VGMSAKAQQYIG-----YLSTGEKQRVMIARALMGQPQVL 183
Query: 765 LFDDPFSAVDAHTGSHLFKEVLLGLL-------NSKTVLYVTHQVEFLPAA-DLVLVIKD 816
+ D+P + +D +E LL +L + ++YVTH +E + A +L++KD
Sbjct: 184 ILDEPAAGLDFIA-----RESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKD 238
Query: 817 GKITQAGKYTDVINS 831
G+ Q G D++ S
Sbjct: 239 GQSIQQGAVEDILTS 253
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 3e-23
Identities = 52/255 (20%), Positives = 93/255 (36%), Gaps = 37/255 (14%)
Query: 1248 IDLRDLQVRYAPHMPFVLRGISCTF-PGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQI 1306
I L + +L+ IS G+K + G G+GK+TL+ L +G +
Sbjct: 22 IQLDQIGRMKQGKT--ILKKISWQIAKGDK-WILYGLNGAGKTTLLNILNAYEPATSGTV 78
Query: 1307 LIDGIDISLIG--LHDLRTRLSIIPQD---PVMFEGTVRSNV--------DPLEEYTDEQ 1353
+ G +G +R + + V V ++ DE
Sbjct: 79 NLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEI 138
Query: 1354 IWEA---LDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDE 1410
EA L + + ++ G L S G++Q V + R L+ + ++L+LDE
Sbjct: 139 RNEAHQLLKLVGMSAKAQQYIGYL-----------STGEKQRVMIARALMGQPQVLILDE 187
Query: 1411 ATASVDTATDNLIQQSLR---QHFSDCTVITIAHRITSVIDS-DMVLLLSHGLIEEYDSP 1466
A +D + L + +I + H I + + +LLL G + +
Sbjct: 188 PAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAV 247
Query: 1467 RKLL--ENKSSSFSQ 1479
+L EN S F +
Sbjct: 248 EDILTSENMSRFFQK 262
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 119 bits (302), Expect = 4e-30
Identities = 58/233 (24%), Positives = 97/233 (41%), Gaps = 34/233 (14%)
Query: 615 ETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKIS 674
A+ + + F + + N + +N + G +AV G G GKS+LL +LG I
Sbjct: 2 NKALSVENLGFYYQ--AENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQ 59
Query: 675 GTLKLCGTKAYVAQSPWIQSG-KIEDNILFG-----------KEMDRERYNAVLDACSLE 722
G +++ + +V Q + D +L G K D + + A L+
Sbjct: 60 GKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQ---VAMQA--LD 114
Query: 723 KDLEILSFGDQTVVGERGIN-LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHL 781
L + R LSGGQ+Q I IARA+ + + L D+P SA+D +
Sbjct: 115 Y-LNLTHLAK------REFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIV 167
Query: 782 FKEVLLGLLNS---KTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYTDVIN 830
LL L TV++ THQ + A A+ L++ G+ +++
Sbjct: 168 LS--LLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQNFKF-GETRNILT 217
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 90.3 bits (225), Expect = 4e-20
Identities = 50/230 (21%), Positives = 90/230 (39%), Gaps = 44/230 (19%)
Query: 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1307
+ + +L Y F+ + ++ ++G+ G GKSTL+ L I P G+I
Sbjct: 5 LSVENLGFYY-QAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE 63
Query: 1308 IDGIDISLIGLHDLRTRLSIIPQDPVM-FEGTVRSNV------------DPLEEYTDEQI 1354
+ + +PQ F +V V P D Q+
Sbjct: 64 VYQ-------------SIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSH--DYQV 108
Query: 1355 -WEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATA 1413
+ALD L +++ L S GQRQL+ + R + K+++LDE T+
Sbjct: 109 AMQALDYLNLTHLAKREFTSL-----------SGGQRQLILIARAIASECKLILLDEPTS 157
Query: 1414 SVDTATDNLIQQSLRQ--HFSDCTVITIAHRITSVID-SDMVLLLSHGLI 1460
++D A +++ L + TV+ H+ V+ ++ LLL+
Sbjct: 158 ALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQNF 207
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 2e-28
Identities = 59/257 (22%), Positives = 105/257 (40%), Gaps = 31/257 (12%)
Query: 1247 KIDLRDLQVRYAPHMPF---VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAA 1303
+I++ ++ + P L +S + + G TGSGKSTL+Q + ++EP +
Sbjct: 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTS 61
Query: 1304 GQILIDGIDISLIGLHDLRTRLSIIPQDPV--MFEGTVR-------SNVDPLEEYTDEQI 1354
G +L DG +++R + I Q P F V N P + +
Sbjct: 62 GDVLYDGERKK---GYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRD-PVPLV 117
Query: 1355 WEALDKCQL-GDEVRKKE-GKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEAT 1412
+A++ L D + + L S G+++ V + V++ IL+LDE
Sbjct: 118 KKAMEFVGLDFDSFKDRVPFFL-----------SGGEKRRVAIASVIVHEPDILILDEPL 166
Query: 1413 ASVD-TATDNLIQQSLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLL 1470
+D +L++ + TVI I+H I +VI+ D V++L G + + L
Sbjct: 167 VGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFL 226
Query: 1471 ENKSSSFSQLVAEYTQR 1487
E F +R
Sbjct: 227 EKYDPRFFTSKMLVMRR 243
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 90.7 bits (226), Expect = 5e-20
Identities = 57/229 (24%), Positives = 102/229 (44%), Gaps = 30/229 (13%)
Query: 617 AIEIADGNFSWD--ISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKIS 674
IE+ + + + L++++L + G + V G GSGKS+LL + G + S
Sbjct: 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTS 61
Query: 675 GTLKLCGTKA----------YVAQSPWIQ--SGKIEDNILFGKE---MDRERYNAVLDAC 719
G + G + Q P Q + ++ D + F + DR+ V A
Sbjct: 62 GDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKA- 120
Query: 720 SLEK-DLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTG 778
+E L+ SF D+ LSGG+K+R+ IA + + DI + D+P +D
Sbjct: 121 -MEFVGLDFDSFKDRVP-----FFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGK 174
Query: 779 SHLFKEVLLGLLNS--KTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGK 824
+ L + ++ + KTV+ ++H +E + D V+V++ GK G
Sbjct: 175 TDLLR--IVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGT 221
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 2e-28
Identities = 57/271 (21%), Positives = 106/271 (39%), Gaps = 41/271 (15%)
Query: 618 IEIADGNFSWDISSH-NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGT 676
I++ + + + +L++INL+V +G +V + G GSGK++LL I G +P SG
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEV-NGEKVIILGPNGSGKTTLLRAISGLLPY-SGN 59
Query: 677 LKLCGT--------KAYVAQSPWIQSG--KIEDNILFG---KEMDRERYNAVLDACSLEK 723
+ + G Y P + D + K +DR+ + +L A L +
Sbjct: 60 IFINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGE 119
Query: 724 DLEILSFGDQTVVGERGIN-LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLF 782
++ R + LS GQ ++ + AL +I D+PF VDA +
Sbjct: 120 EIL-----------RRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVIS 168
Query: 783 KEVL-LGLLNSKTVLYVTH-QVEFLPAADLVLVI-KDGKITQAGKYTDVINS------GT 833
+ + G K + VTH + ++ ++++ S
Sbjct: 169 RYIKEYG----KEGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLESSIVEGERN 224
Query: 834 DFMELVDAHKQALSTLDSIEGRPLSEKGSAN 864
D + ++D + +S + G GS N
Sbjct: 225 DALLVLDIMDKKVSIVKGDLGMKFGALGSLN 255
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 99.3 bits (248), Expect = 5e-23
Identities = 55/235 (23%), Positives = 102/235 (43%), Gaps = 30/235 (12%)
Query: 1248 IDLRDLQVRY--APHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQ 1305
I L+++ + + F L I+ GEK I+G GSGK+TL++ + ++ P +G
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVNGEK-VIILGPNGSGKTTLLRAISGLL-PYSGN 59
Query: 1306 ILIDGIDISLIGLHDLRTRLSIIPQDP--VMFEGTVRSNVD---PLEEYTDEQIWEALDK 1360
I I+G+++ +R + P TV V L+ + E L
Sbjct: 60 IFINGMEVR-----KIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKA 114
Query: 1361 CQLGDEVRKKE-GKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTAT 1419
+LG+E+ +++ KL S GQ LV L + +I+ LDE +VD A
Sbjct: 115 LKLGEEILRRKLYKL-----------SAGQSVLVRTSLALASQPEIVGLDEPFENVDAAR 163
Query: 1420 DNLIQQSLRQHFSDCTVITIAHRITSVID-SDMVLLLSHG-LIEEYDSPRKLLEN 1472
++I + ++++ I + H + + + G ++ S +LLE+
Sbjct: 164 RHVISRYIKEYGK--EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLES 216
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 5e-25
Identities = 65/246 (26%), Positives = 110/246 (44%), Gaps = 30/246 (12%)
Query: 1244 SHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAA 1303
+ + +L Y+ L+GI+ + T I+G G GKSTL Q I++P++
Sbjct: 4 EDYILKVEELNYNYSDGTH-ALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSS 62
Query: 1304 GQILIDGIDISL--IGLHDLRTRLSIIPQDPV--MFEGTVRSNVD--------PLEEYTD 1351
G+IL D I G+ LR + I+ QDP +F +V +V P +E
Sbjct: 63 GRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDE-IR 121
Query: 1352 EQIWEALDKCQLGDEVRKKE-GKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDE 1410
+++ AL + + + ++ K L S GQ++ V + VL+ K+L+LDE
Sbjct: 122 KRVDNALKRTGI-EHLKDKPTHCL-----------SFGQKKRVAIAGVLVMEPKVLILDE 169
Query: 1411 ATASVDTATDNLIQQSLR--QHFSDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPR 1467
TA +D + I + L Q T+I H I V D V ++ G + +P+
Sbjct: 170 PTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPK 229
Query: 1468 KLLENK 1473
++ K
Sbjct: 230 EVFAEK 235
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 91.5 bits (228), Expect = 3e-20
Identities = 54/243 (22%), Positives = 99/243 (40%), Gaps = 43/243 (17%)
Query: 614 SETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKI 673
+ +++ + N+++ + LK IN+ + G A+ G G GKS+L G +
Sbjct: 4 EDYILKVEELNYNYSDGT--HALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS 61
Query: 674 SGTLKLCGTKA---------------YVAQSPWIQ--SGKIEDNILFG--------KEMD 708
SG + V Q P Q S + ++ FG E+
Sbjct: 62 SGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEI- 120
Query: 709 RERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDD 768
R+R + L +E D+ LS GQK+R+ IA L + + + D+
Sbjct: 121 RKRVDNALKRTGIEH------LKDKPT-----HCLSFGQKKRVAIAGVLVMEPKVLILDE 169
Query: 769 PFSAVDAHTGSHLFKEVLLGLLNS--KTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKY 825
P + +D G ++L+ + T++ TH ++ +P D V V+K+G++ G
Sbjct: 170 PTAGLDPM-GVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNP 228
Query: 826 TDV 828
+V
Sbjct: 229 KEV 231
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 3e-23
Identities = 58/240 (24%), Positives = 104/240 (43%), Gaps = 29/240 (12%)
Query: 632 HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPW 691
+ L+ ++ G + + G G GK++ + + G G ++ T AY Q
Sbjct: 368 GSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQY-- 425
Query: 692 IQSGKIEDNI--LFGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQ 749
+ E + L ++D + N+ L K L I+ D+ V +LSGG+ Q
Sbjct: 426 -IKAEYEGTVYELLS-KIDSSKLNSNFYKTELLKPLGIIDLYDRNV-----EDLSGGELQ 478
Query: 750 RIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNS--KTVLYVTHQVEFLPA 807
R+ IA L +DADIYL D+P + +D + + + L+ KT L V H V +
Sbjct: 479 RVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSR-AIRHLMEKNEKTALVVEHDVLMIDY 537
Query: 808 -ADLVLVIKDGKITQAGKYTDVINSGTDFMELVDAHKQALSTL------DSIEGRPLSEK 860
+D ++V +G+ + G+ M + + + L+++ D GRP + K
Sbjct: 538 VSDRLIVF-EGEPGRHGR-------ALPPMGMREGMNRFLASVGITFRRDPDSGRPRANK 589
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 88.9 bits (221), Expect = 4e-18
Identities = 57/245 (23%), Positives = 95/245 (38%), Gaps = 50/245 (20%)
Query: 617 AIEIAD--GNFSWDIS---SHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVP 671
AI I + D N + V GM V + G G+GK++ + + G++
Sbjct: 83 AISIVNLPEQLDEDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLI 142
Query: 672 ------KISGTLKLCGTKA----------------------YVAQSPWIQSGKIEDNILF 703
S + + YV P GK+ + L
Sbjct: 143 PNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRE--LL 200
Query: 704 GKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADI 763
K + ++ V+ K+LE+ + D+ + LSGG+ QR+ IA AL + A
Sbjct: 201 KKVDEVGKFEEVV------KELELENVLDRELH-----QLSGGELQRVAIAAALLRKAHF 249
Query: 764 YLFDDPFSAVDAHTGSHLFKEVLLGLLNS-KTVLYVTHQVEFLPA-ADLVLVIKDGKITQ 821
Y FD+P S +D + V+ L N K VL V H + L +D++ V+ G+
Sbjct: 250 YFFDEPSSYLDIRQRLKV-ARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVY-GEPGV 307
Query: 822 AGKYT 826
G ++
Sbjct: 308 YGIFS 312
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 82.0 bits (203), Expect = 7e-16
Identities = 46/212 (21%), Positives = 77/212 (36%), Gaps = 44/212 (20%)
Query: 1259 PHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGL 1318
+ F L + GIVG G GK+T ++ L + EP G++ D
Sbjct: 366 DYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDL-------- 417
Query: 1319 HDLRTRLSIIPQDP---VMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKK---EG 1372
++ + +EGTV E + L+ E+ K
Sbjct: 418 -------TVAYKPQYIKAEYEGTVY-------ELLSKIDSSKLNSNFYKTELLKPLGIID 463
Query: 1373 KLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVD----TATDNLIQQSLR 1428
D V + S G+ Q V + LL+ I +LDE +A +D A I+ +
Sbjct: 464 LYDRNVED----LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLME 519
Query: 1429 QHFSDCTVITIAHRITSVIDSDMVLLLSHGLI 1460
++ + T + + H D M+ +S LI
Sbjct: 520 KN--EKTALVVEH------DVLMIDYVSDRLI 543
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 78.1 bits (193), Expect = 1e-14
Identities = 46/252 (18%), Positives = 94/252 (37%), Gaps = 43/252 (17%)
Query: 1251 RDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEP------AAG 1304
D RY + FVL + G GIVG G+GK+T ++ L + P +
Sbjct: 95 EDCVHRYGVNA-FVLYRLPIVKDGMV-VGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSW 152
Query: 1305 QILIDGIDISLIGLHDLRTR---LSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKC 1361
+I + + + R + + + + VD L + ++ E L K
Sbjct: 153 DNVIRAFRGNELQNYFERLKNGEIRPVVKPQ---------YVDLLPKAVKGKVRELLKKV 203
Query: 1362 QLGDEVRKK------EGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASV 1415
+ + E LD ++ + S G+ Q V + LL++ DE ++ +
Sbjct: 204 DEVGKFEEVVKELELENVLDRELHQ----LSGGELQRVAIAAALLRKAHFYFFDEPSSYL 259
Query: 1416 D-TATDNLIQ--QSLRQHFSDCTVITIAHRITSVID--SDMVLLL-----SHGLIEEYDS 1465
D + + + L V+ + H + +V+D SD++ ++ +G+ +
Sbjct: 260 DIRQRLKVARVIRRLANE--GKAVLVVEHDL-AVLDYLSDVIHVVYGEPGVYGIFSKPKG 316
Query: 1466 PRKLLENKSSSF 1477
R + +
Sbjct: 317 TRNGINEFLQGY 328
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 6e-22
Identities = 47/200 (23%), Positives = 73/200 (36%), Gaps = 31/200 (15%)
Query: 633 NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWI 692
+ L + + + G G+GK++L+ + G + G + Q
Sbjct: 365 DFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAP 424
Query: 693 Q---------SGKIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINL 743
+ KI L + + V+ K L I DQ V +L
Sbjct: 425 KFPGTVRQLFFKKIRGQFL-----NPQFQTDVV------KPLRIDDIIDQEV-----QHL 468
Query: 744 SGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTG---SHLFKEVLLGLLNSKTVLYVTH 800
SGG+ QR+ I AL ADIYL D+P + +D+ S + + L N KT V H
Sbjct: 469 SGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRR--FILHNKKTAFIVEH 526
Query: 801 QVEFLPA-ADLVLVIKDGKI 819
AD V+V +
Sbjct: 527 DFIMATYLADKVIVFEGIPS 546
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 93.6 bits (233), Expect = 2e-19
Identities = 54/245 (22%), Positives = 82/245 (33%), Gaps = 54/245 (22%)
Query: 631 SHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK------- 683
S N G + + GT G GKS+ L + G+ G
Sbjct: 88 SANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYF 147
Query: 684 -----------------------AYVAQSPWIQSGKIE---DNILFGKEMDRERYNAVLD 717
YV P G ++ + + E E +
Sbjct: 148 RGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIK 207
Query: 718 ACSLEKDLEILSFGDQTVVGERGI-NLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAH 776
LE V +R I LSGG+ QR I + Q+AD+Y+FD+P S +D
Sbjct: 208 ILQLEN------------VLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVK 255
Query: 777 TGSHLFKEVLLGLLNS-KTVLYVTHQVEFLPA-ADLVLVIKD-----GKITQAGKYTDVI 829
+ +++ LL K V+ V H + L +D V +I G +T + I
Sbjct: 256 QRLNA-AQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSVYGVVTLPASVREGI 314
Query: 830 NSGTD 834
N D
Sbjct: 315 NIFLD 319
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 90.1 bits (224), Expect = 2e-18
Identities = 43/255 (16%), Positives = 87/255 (34%), Gaps = 35/255 (13%)
Query: 1228 EPPLEIEESRPNHSWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSG 1287
L+ + + FVL F + ++G G+G
Sbjct: 331 TEALQFRIADATEDLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTG 390
Query: 1288 KSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSIIPQDPV--MFEGTVRSNVDP 1345
K+TLI+ L ++P GQ + ++S+ +++ V +F +R
Sbjct: 391 KTTLIKLLAGALKPDEGQDIPKL-NVSM-----KPQKIAPKFPGTVRQLFFKKIR----- 439
Query: 1346 LEEYTDEQIW-EALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRK 1404
++ + Q + + ++ + +D +V S G+ Q V + L
Sbjct: 440 -GQFLNPQFQTDVVKPLRI-------DDIIDQEVQH----LSGGELQRVAIVLALGIPAD 487
Query: 1405 ILMLDEATASVD----TATDNLIQQSLRQHFSDCTVITIAH---RITSVIDSDMVLLLSH 1457
I ++DE +A +D +I++ H + T + H T + D +V
Sbjct: 488 IYLIDEPSAYLDSEQRIICSKVIRR-FILH-NKKTAFIVEHDFIMATYLADKVIVFEGIP 545
Query: 1458 GLIEEYDSPRKLLEN 1472
+P LL
Sbjct: 546 SKNAHARAPESLLTG 560
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 72.8 bits (179), Expect = 5e-13
Identities = 47/231 (20%), Positives = 84/231 (36%), Gaps = 29/231 (12%)
Query: 1251 RDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDG 1310
+ RY+ + F L + PG+ G+VG G GKST ++ L +P G+
Sbjct: 81 AHVTHRYSAN-SFKLHRLPTPRPGQV-LGLVGTNGIGKSTALKILAGKQKPNLGRFDDPP 138
Query: 1311 IDISLIGLHDLRTRLSIIPQDPVMFEGTVRSN-----VDPLEEYTDEQIWEALDKCQLGD 1365
+I + + M E +++ VD + + + + L
Sbjct: 139 EWQEIIKYFRGSELQNYFTK---MLEDDIKAIIKPQYVDNIPRAIKGPVQKVGE--LLKL 193
Query: 1366 EVRKKEGKLDSKVTENG-ENW--------SMGQRQLVCLGRVLLKRRKILMLDEATASVD 1416
+ K + + EN S G+ Q +G ++ + M DE ++ +D
Sbjct: 194 RMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLD 253
Query: 1417 -TATDNLIQ--QSLRQHFSDCTVITIAHRITSVID--SDMVLLLSHGLIEE 1462
N Q +SL VI + H + SV+D SD V ++
Sbjct: 254 VKQRLNAAQIIRSLLA--PTKYVICVEHDL-SVLDYLSDFVCIIYGVPSVY 301
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 99.7 bits (249), Expect = 1e-21
Identities = 53/202 (26%), Positives = 89/202 (44%), Gaps = 18/202 (8%)
Query: 633 NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWI 692
+ L+ ++ G + + G G GK++ + + G G ++ T AY + +I
Sbjct: 299 SFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAY--KPQYI 356
Query: 693 QSGKIEDNI--LFGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQR 750
E + L ++D + N+ L K L I+ D+ V LSGG+ QR
Sbjct: 357 -KADYEGTVYELLS-KIDASKLNSNFYKTELLKPLGIIDLYDREV-----NELSGGELQR 409
Query: 751 IQIARALYQDADIYLFDDPFSAVDAH---TGSHLFKEVLLGLLNSKTVLYVTHQVEFLPA 807
+ IA L +DADIYL D+P + +D S + L N KT L V H V +
Sbjct: 410 VAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRH--LMEKNEKTALVVEHDVLMIDY 467
Query: 808 -ADLVLVIKDGKITQAGKYTDV 828
+D ++V +G+ + G+
Sbjct: 468 VSDRLMVF-EGEPGKYGRALPP 488
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 82.7 bits (205), Expect = 4e-16
Identities = 54/229 (23%), Positives = 88/229 (38%), Gaps = 47/229 (20%)
Query: 631 SHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVP------KISGTLKLCGTKA 684
N + V GM V + G G+GKS+ + + G++ S + +
Sbjct: 32 GVNAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRG 91
Query: 685 ----------------------YVAQSPWIQSGKIEDNILFGKEMDRERYNAVLDACSLE 722
YV P GK+ + + K + + V+ A LE
Sbjct: 92 NELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELL--KKADETGKLEEVVKALELE 149
Query: 723 KDLEILSFGDQTVVGERGI-NLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHL 781
LE R I +LSGG+ QR+ IA AL ++A Y FD+P S +D +
Sbjct: 150 NVLE------------REIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNA 197
Query: 782 FKEVLLGLLNS-KTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYTDV 828
+ L K+VL V H + L +D++ V+ G+ G ++
Sbjct: 198 -ARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVY-GEPGVYGIFSQP 244
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 81.2 bits (201), Expect = 9e-16
Identities = 50/243 (20%), Positives = 83/243 (34%), Gaps = 47/243 (19%)
Query: 1228 EPPLEIEESRPNHSWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSG 1287
++ ++ + L Y F L + GIVG G G
Sbjct: 268 PYEIKFTKTGERVEIERETLVTYPRLVKDYGS---FRLEVEPGEIKKGEVIGIVGPNGIG 324
Query: 1288 KSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSIIPQDP---VMFEGTVRSNVD 1344
K+T ++ L + EP G+I D ++ + +EGTV
Sbjct: 325 KTTFVKMLAGVEEPTEGKIEWDL---------------TVAYKPQYIKADYEGTVY---- 365
Query: 1345 PLEEYTDEQIWEALDKCQLGDEVRKK---EGKLDSKVTENGENWSMGQRQLVCLGRVLLK 1401
E + L+ E+ K D +V E S G+ Q V + LL+
Sbjct: 366 ---ELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNE----LSGGELQRVAIAATLLR 418
Query: 1402 RRKILMLDEATASVD----TATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSH 1457
I +LDE +A +D A I+ L + + T + + H D M+ +S
Sbjct: 419 DADIYLLDEPSAYLDVEQRLAVSRAIRH-LMEKN-EKTALVVEH------DVLMIDYVSD 470
Query: 1458 GLI 1460
L+
Sbjct: 471 RLM 473
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 79.3 bits (196), Expect = 4e-15
Identities = 46/240 (19%), Positives = 94/240 (39%), Gaps = 43/240 (17%)
Query: 1248 IDLRDLQV----RYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEP-- 1301
+ L+ RY + FVL + G GIVG G+GKST ++ L + P
Sbjct: 18 SHMEQLEEDCVHRYGVNA-FVLYRLPVVKEGMV-VGIVGPNGTGKSTAVKILAGQLIPNL 75
Query: 1302 ----AAGQILIDGIDISLIGLHDLRTR---LSIIPQ------DPVMFEGTVRSNVDPLEE 1348
+ +I + + + + + + + + P +G V + +E
Sbjct: 76 CGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADE 135
Query: 1349 YTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILML 1408
++ E + +L E L+ ++ S G+ Q V + LL+
Sbjct: 136 --TGKLEEVVKALEL-------ENVLEREIQH----LSGGELQRVAIAAALLRNATFYFF 182
Query: 1409 DEATASVD-TATDNLIQ--QSLRQHFSDCTVITIAHRITSVID--SDMVLLLSHGLIEEY 1463
DE ++ +D N + + L + +V+ + H + +V+D SD++ ++ +G Y
Sbjct: 183 DEPSSYLDIRQRLNAARAIRRLSEE--GKSVLVVEHDL-AVLDYLSDIIHVV-YGEPGVY 238
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 98.2 bits (245), Expect = 4e-21
Identities = 39/209 (18%), Positives = 77/209 (36%), Gaps = 30/209 (14%)
Query: 632 HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKA-----YV 686
+ L N + G + + G G GK++ ++GE+ G++ +
Sbjct: 280 GDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRI 339
Query: 687 AQSPWIQSGK-IEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSG 745
+ + +E+ + V K L + + V +LSG
Sbjct: 340 FPNYDGTVQQYLENASKDALSTSSWFFEEVT------KRLNLHRLLESNV-----NDLSG 388
Query: 746 GQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNS------KTVLYVT 799
G+ Q++ IA L ++AD+Y+ D P S +D + ++ + +
Sbjct: 389 GELQKLYIAATLAKEADLYVLDQPSSYLDVEE-----RYIVAKAIKRVTRERKAVTFIID 443
Query: 800 HQVEFLPA-ADLVLVIKDGKITQAGKYTD 827
H + AD ++V K G+ +AG T
Sbjct: 444 HDLSIHDYIADRIIVFK-GEPEKAGLATS 471
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 94.3 bits (235), Expect = 6e-20
Identities = 44/222 (19%), Positives = 81/222 (36%), Gaps = 37/222 (16%)
Query: 636 LKDINLKVFH-GMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK----------- 683
K L + V G G GK+++L + GE+ G K
Sbjct: 14 FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKE 73
Query: 684 -AYVAQSPW---------IQSGKIEDNILFGKE---MDR-ERYNAVLDACSLEKDLEILS 729
+ + IQ + L G + + + + + L + +
Sbjct: 74 IYNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVK---ELLNMTN 130
Query: 730 FGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL 789
++ LSGG QR+ +A +L ++AD+Y+FD P S +D ++ + + L
Sbjct: 131 LWNKDA-----NILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNM-AKAIREL 184
Query: 790 LNSKTVLYVTHQVEFL-PAADLVLVIKDGKITQAGKYTDVIN 830
L +K V+ V H + L DL+ +I G+ +
Sbjct: 185 LKNKYVIVVDHDLIVLDYLTDLIHIIYGESSVY-GRVSKSYA 225
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 86.2 bits (214), Expect = 3e-17
Identities = 40/207 (19%), Positives = 75/207 (36%), Gaps = 40/207 (19%)
Query: 1263 FVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLR 1322
F L + + GI+G G GK+T + L + G + +
Sbjct: 282 FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK------------ 329
Query: 1323 TRLSIIPQ-DPVMFEGTVRSNVDPLEEYTDEQIWEAL-DKCQLGDEVRKK---EGKLDSK 1377
LS PQ ++GTV+ +Y + +AL +EV K+ L+S
Sbjct: 330 QILSYKPQRIFPNYDGTVQ-------QYLENASKDALSTSSWFFEEVTKRLNLHRLLESN 382
Query: 1378 VTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVD----TATDNLIQQSLRQHFSD 1433
V + S G+ Q + + L K + +LD+ ++ +D I++ + +
Sbjct: 383 VND----LSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKR-VTRER-K 436
Query: 1434 CTVITIAHRITSVIDSDMVLLLSHGLI 1460
I H D + ++ +I
Sbjct: 437 AVTFIIDH------DLSIHDYIADRII 457
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 67.4 bits (165), Expect = 2e-11
Identities = 30/202 (14%), Positives = 73/202 (36%), Gaps = 20/202 (9%)
Query: 1273 PGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLR-TRLSIIPQD 1331
G++G+ G GK+T+++ L + P G + L R + ++
Sbjct: 24 NNTI-LGVLGKNGVGKTTVLKILAGEIIPNFGDP--NSKVGKDEVLKRFRGKEIYNYFKE 80
Query: 1332 PVMFEGTVRS---NVDPLEEYTDEQIWEALDKCQLGDEVRK------KEGKLDSKVTENG 1382
E + V+ ++ + E L K + + +
Sbjct: 81 LYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANI-- 138
Query: 1383 ENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHR 1442
S G Q + + LL+ + + D+ ++ +D + +++R+ + VI + H
Sbjct: 139 --LSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHD 196
Query: 1443 ITSVID--SDMVLLLSHGLIEE 1462
+ V+D +D++ ++
Sbjct: 197 L-IVLDYLTDLIHIIYGESSVY 217
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 92.2 bits (230), Expect = 1e-20
Identities = 45/247 (18%), Positives = 79/247 (31%), Gaps = 54/247 (21%)
Query: 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1307
+ L+D+ L +S + +VG G+GKSTL+ + + G I
Sbjct: 5 MQLQDVAEST------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQ 57
Query: 1308 IDGIDISLIGLHDLRTRLSIIPQDPVMFEG-TVRSNVD----PLEEYTDEQI-WEALDKC 1361
G + L + + Q V + T ++ +
Sbjct: 58 FAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHD---KTRTELLNDVAGAL 114
Query: 1362 QLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLL-------KRRKILMLDEATAS 1414
L D KL + S G+ Q V L V+L ++L+LDE S
Sbjct: 115 ALDD-------KLGRSTNQ----LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNS 163
Query: 1415 VDTA----TDNLIQQSLRQHFSDCTVITIAHRITSVID-------SDMVLLLSHGLIEEY 1463
+D A D ++ +Q ++ +H D + LL G +
Sbjct: 164 LDVAQQSALDKILSALSQQG---LAIVMSSH------DLNHTLRHAHRAWLLKGGKMLAS 214
Query: 1464 DSPRKLL 1470
++L
Sbjct: 215 GRREEVL 221
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 79.9 bits (198), Expect = 2e-16
Identities = 42/223 (18%), Positives = 90/223 (40%), Gaps = 46/223 (20%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------- 682
L ++ +V G + + G G+GKS+LL+ + G G+++ G
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG-KGSIQFAGQPLEAWSATKLALH 74
Query: 683 KAYVAQSPWIQSG-KIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGI 741
+AY++Q + + + D+ R + D L + ++
Sbjct: 75 RAYLSQQQTPPFATPVWHYLTLHQ-HDKTRTELLNDVAGA---LALDDKLGRSTN----- 125
Query: 742 NLSGGQKQRIQIARALYQD-------ADIYLFDDPFSAVD-AHTGSHLFKEVLLGLLNS- 792
LSGG+ QR+++A + Q + L D+P +++D A + L +L++
Sbjct: 126 QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQ------QSALDKILSAL 179
Query: 793 ----KTVLYVTHQVEFLPA--ADLVLVIKDGKITQAGKYTDVI 829
++ +H + A ++K GK+ +G+ +V+
Sbjct: 180 SQQGLAIVMSSHDLN-HTLRHAHRAWLLKGGKMLASGRREEVL 221
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 87.2 bits (217), Expect = 3e-19
Identities = 38/192 (19%), Positives = 84/192 (43%), Gaps = 32/192 (16%)
Query: 1279 GIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSIIPQDPVMFEG- 1337
G G GK+TL++T+ ++P G+I+ +G+ I+ ++ ++ +P++ ++
Sbjct: 39 NFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKIFFLPEEIIVPRKI 93
Query: 1338 TVRSNVD--------PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQ 1389
+V + + + +I +AL+ ++ D ++KK G+L S G
Sbjct: 94 SVEDYLKAVASLYGVKVNK---NEIMDALESVEVLD-LKKKLGEL-----------SQGT 138
Query: 1390 RQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSD-CTVITIAHRITSVID 1448
+ V L LL +I +LD+ ++D + + + +S+ + + VI + S D
Sbjct: 139 IRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCD 198
Query: 1449 SDMVLLLSHGLI 1460
L
Sbjct: 199 V--NENLHKYST 208
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 83.3 bits (207), Expect = 5e-18
Identities = 40/205 (19%), Positives = 79/205 (38%), Gaps = 32/205 (15%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG---TKA-----YVA 687
L+ I + + G V G G GK++LL I + + G + G TK ++
Sbjct: 25 LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLP 84
Query: 688 QSPWIQSG-KIEDNILF-----GKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGI 741
+ + +ED + G ++++ L++ + + ++
Sbjct: 85 EEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLD------------LKKKLG 132
Query: 742 NLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSK--TVLYVT 799
LS G +R+Q+A L +A+IY+ DDP A+D + + +L +L K ++
Sbjct: 133 ELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHK-VLKSILEILKEKGIVIISSR 191
Query: 800 HQVEFLPAADLVLVIKDGKITQAGK 824
L D+ + K
Sbjct: 192 E---ELSYCDVNENLHKYSTKIDKK 213
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 85.3 bits (212), Expect = 3e-18
Identities = 66/240 (27%), Positives = 99/240 (41%), Gaps = 74/240 (30%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCI-LGEVPKISGTLKLCGTKAYVAQSPWIQS 694
LK IN+ + G V V G GSGKS+ L C+ L E G + + G
Sbjct: 40 LKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFD-EGEIIIDGIN----------- 87
Query: 695 GKIEDNILFGKEMDRER---------YN-----AVLDACSL--------------EKDLE 726
++ +++ R +N VL+ +L K +E
Sbjct: 88 --LKAK---DTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAME 142
Query: 727 ILSFGDQTVVGER-GI---------NLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAH 776
+L ++ G+ +LSGGQ QR+ IARAL + I LFD+P SA+D
Sbjct: 143 LL---------DKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDP- 192
Query: 777 TGSHLFKEVL---LGLLNSK-TVLYVTHQVEFL-PAADLVLVIKDGKITQAGKYTDVINS 831
+ EVL L N T++ VTH++ F D VL + G I + GK D+ +
Sbjct: 193 ---EMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 249
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 64.9 bits (159), Expect = 2e-11
Identities = 52/190 (27%), Positives = 84/190 (44%), Gaps = 44/190 (23%)
Query: 1248 IDLRDLQVRYAPHMPFVLRGISCTF-PGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQI 1306
ID+ L+ + VL+GI+ GE ++G +GSGKST ++ L + + G+I
Sbjct: 25 IDVHQLKKSFGSLE--VLKGINVHIREGEVVV-VIGPSGSGKSTFLRCLNLLEDFDEGEI 81
Query: 1307 LIDGIDIS--LIGLHDLRTRLSIIPQD----PVMFEGTVRSNVDPLEEYTDEQIW----- 1355
+IDGI++ L+ +R + ++ Q P M TV +N+ T +
Sbjct: 82 IIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHM---TVLNNI------TLAPMKVRKWP 132
Query: 1356 --EA-------LDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKIL 1406
+A LDK L D+ L S GQ Q V + R L KI+
Sbjct: 133 REKAEAKAMELLDKVGLKDKAHAYPDSL-----------SGGQAQRVAIARALAMEPKIM 181
Query: 1407 MLDEATASVD 1416
+ DE T+++D
Sbjct: 182 LFDEPTSALD 191
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 83.0 bits (206), Expect = 2e-17
Identities = 69/262 (26%), Positives = 110/262 (41%), Gaps = 63/262 (24%)
Query: 613 SSETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCI-LGEVP 671
SE + + D + + + LK ++L+ G +++ G+ GSGKS+ L CI E P
Sbjct: 2 MSENKLHVIDLHKRYG---GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKP 58
Query: 672 KISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMDRER---------YN-----AVLD 717
G + + G + + Q + ++ R +N VL+
Sbjct: 59 S-EGAIIVNGQNINLVRDKDGQLKVADK-----NQLRLLRTRLTMVFQHFNLWSHMTVLE 112
Query: 718 ACSL--------------EKDLEILSFGDQTVVG--ERG-----INLSGGQKQRIQIARA 756
E+ L+ L VG ER ++LSGGQ+QR+ IARA
Sbjct: 113 NVMEAPIQVLGLSKHDARERALKYL-----AKVGIDERAQGKYPVHLSGGQQQRVSIARA 167
Query: 757 LYQDADIYLFDDPFSAVDAHTGSHLFKEVLL---GLLNSK-TVLYVTHQVEFLPA---AD 809
L + D+ LFD+P SA+D L EVL L T++ VTH++ F A +
Sbjct: 168 LAMEPDVLLFDEPTSALD----PELVGEVLRIMQQLAEEGKTMVVVTHEMGF--ARHVSS 221
Query: 810 LVLVIKDGKITQAGKYTDVINS 831
V+ + GKI + G V +
Sbjct: 222 HVIFLHQGKIEEEGDPEQVFGN 243
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 56.0 bits (136), Expect = 2e-08
Identities = 70/270 (25%), Positives = 112/270 (41%), Gaps = 76/270 (28%)
Query: 1247 KIDLRDLQVRYAPHMPFVLRGISCTF-PGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQ 1305
K+ + DL RY H VL+G+S G+ I+G +GSGKST ++ + + +P+ G
Sbjct: 6 KLHVIDLHKRYGGHE--VLKGVSLQARAGDV-ISIIGSSGSGKSTFLRCINFLEKPSEGA 62
Query: 1306 ILIDGIDISLIG-------------LHDLRTRLSIIPQD----PVMFEGTVRSNVDPLEE 1348
I+++G +I+L+ L LRTRL+++ Q M TV NV
Sbjct: 63 IIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHM---TVLENV----- 114
Query: 1349 YTDEQIW-------EA-------LDKCQLGDEVRKKE-GKLDSKVTENGENWSMGQRQLV 1393
+ I +A L K + + + K L S GQ+Q V
Sbjct: 115 -MEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHL-----------SGGQQQRV 162
Query: 1394 CLGRVLLKRRKILMLDEATASVDTATD--------NLIQQSLRQHFSDCTVITIAHRIT- 1444
+ R L +L+ DE T +A D ++QQ + T++ + H +
Sbjct: 163 SIARALAMEPDVLLFDEPT----SALDPELVGEVLRIMQQLAEEGK---TMVVVTHEMGF 215
Query: 1445 --SVIDSDMVLLLSHGLIEEYDSPRKLLEN 1472
V S V+ L G IEE P ++ N
Sbjct: 216 ARHV--SSHVIFLHQGKIEEEGDPEQVFGN 243
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 82.2 bits (204), Expect = 1e-16
Identities = 60/223 (26%), Positives = 98/223 (43%), Gaps = 56/223 (25%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILG-EVPKISGTLKLCGTKAYVAQSPWI-- 692
L DI+L + G + + G G GK++LL C+ G E P SG + L G K +++ +
Sbjct: 20 LNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD-SGEISLSG-KTIFSKNTNLPV 77
Query: 693 ---------QSG------KIEDNILFGKEMD-------RERYNAVLDACSLEKDLEILSF 730
Q G + NI +G R+R A+L+ +
Sbjct: 78 RERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGIS------EL 131
Query: 731 GD----QTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVL 786
+ LSGGQ+QR +ARAL D ++ L D+PFSA+D + ++++
Sbjct: 132 AGRYPHE---------LSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMI 182
Query: 787 -----LGLLNSKTVLYVTH-QVEFLPAADLVLVIKDGKITQAG 823
G + ++V+H + E L AD + V+K G+I Q
Sbjct: 183 AALRANGK----SAVFVSHDREEALQYADRIAVMKQGRILQTA 221
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 58.7 bits (143), Expect = 6e-09
Identities = 53/265 (20%), Positives = 102/265 (38%), Gaps = 61/265 (23%)
Query: 1248 IDLRDLQVRYAPHMPFVLRGISCTF-PGEKKTGIVGRTGSGKSTLIQTLFRIV----EPA 1302
+ + L + VL IS + PGE I+G +G GK+TL+ R + +P
Sbjct: 5 LHIGHLSKSFQNTP--VLNDISLSLDPGEILF-IIGASGCGKTTLL----RCLAGFEQPD 57
Query: 1303 AGQILIDGIDISLIGLH---DLRTRLSIIPQD----PVMFEGTVRSNV--------DPLE 1347
+G+I + G I + R RL + Q+ P + TV N+
Sbjct: 58 SGEISLSGKTIFSKNTNLPVRER-RLGYLVQEGVLFPHL---TVYRNIAYGLGNGKGRTA 113
Query: 1348 EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILM 1407
+ ++I L+ + + + +L S GQ+Q L R L ++++
Sbjct: 114 Q-ERQRIEAMLELTGISELAGRYPHEL-----------SGGQQQRAALARALAPDPELIL 161
Query: 1408 LDEATASVDTATDNLIQQSLR--QHFSDCTVITIAHRITSVID-------SDMVLLLSHG 1458
LDE +++D I++ + + + + ++H D +D + ++ G
Sbjct: 162 LDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSH------DREEALQYADRIAVMKQG 215
Query: 1459 LIEEYDSPRKLLENKSSSFSQLVAE 1483
I + SP +L + A
Sbjct: 216 RILQTASPHELYRQPADLD---AAL 237
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 78.7 bits (195), Expect = 3e-16
Identities = 55/214 (25%), Positives = 91/214 (42%), Gaps = 42/214 (19%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILG--EVPKISGTLKLCGTKAYVAQSP--- 690
LK I+L V G V++ G GSGKS+LL ILG + P G + L G + V +
Sbjct: 20 LKGISLSVKKGEFVSIIGASGSGKSTLLY-ILGLLDAPT-EGKVFLEGKE--VDYTNEKE 75
Query: 691 --WIQSGKI---------------EDNI----LFGKEMDRERYNAVLDACSLEKDLEILS 729
+++ K+ +N+ L + +E L L
Sbjct: 76 LSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYL------LSELG 129
Query: 730 FGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL 789
GD+ + + LSGG++QR+ IARAL + + D+P +D+ + +
Sbjct: 130 LGDK--LSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMD--IFLK 185
Query: 790 LNS--KTVLYVTHQVEFLPAADLVLVIKDGKITQ 821
+N +++ VTH+ E L +KDGK+
Sbjct: 186 INEGGTSIVMVTHERELAELTHRTLEMKDGKVVG 219
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 61.0 bits (149), Expect = 3e-10
Identities = 50/215 (23%), Positives = 91/215 (42%), Gaps = 42/215 (19%)
Query: 1248 IDLRDLQVRYAPHMPFVLRGISCT-FPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQI 1306
+ +++ +L+GIS + GE I+G +GSGKSTL+ L + P G++
Sbjct: 5 LRAENIKKVI--RGYEILKGISLSVKKGEF-VSIIGASGSGKSTLLYILGLLDAPTEGKV 61
Query: 1307 LIDGIDISLIG---LHDLRTRLSI---------IPQDPVMFEGTVRSNVD-PL------E 1347
++G ++ L LR R + IP E T NV P+ +
Sbjct: 62 FLEGKEVDYTNEKELSLLRNR-KLGFVFQFHYLIP------ELTALENVIVPMLKMGKPK 114
Query: 1348 EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILM 1407
+ E+ L + LGD++ +K +L S G++Q V + R L +L
Sbjct: 115 KEAKERGEYLLSELGLGDKLSRKPYEL-----------SGGEQQRVAIARALANEPILLF 163
Query: 1408 LDEATASVDTATDNLIQQSLRQ-HFSDCTVITIAH 1441
DE T ++D+A + + + +++ + H
Sbjct: 164 ADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTH 198
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 78.7 bits (195), Expect = 3e-16
Identities = 57/205 (27%), Positives = 89/205 (43%), Gaps = 42/205 (20%)
Query: 656 GSGKSSLLSCILG-EVPKISGTLKLCG-----TKAY------VAQS----PWIQSGKIED 699
G+GKS L I G P G ++L G V Q P + +
Sbjct: 34 GAGKSVFLELIAGIVKPD-RGEVRLNGADITPLPPERRGIGFVPQDYALFPHL---SVYR 89
Query: 700 NILFG-KEMDR-ERYNAVLDACSLEKDLEILSFGDQTVVGERGIN-LSGGQKQRIQIARA 756
NI +G + ++R ER V + E L + +R LSGG++QR+ +ARA
Sbjct: 90 NIAYGLRNVERVERDRRVREM------AEKLGIAH---LLDRKPARLSGGERQRVALARA 140
Query: 757 LYQDADIYLFDDPFSAVDAHTGSHLFKEVL-----LGLLNSKTVLYVTH-QVEFLPAADL 810
L + L D+P SAVD T L +E+ + +L+VTH +E AD
Sbjct: 141 LVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDV----PILHVTHDLIEAAMLADE 196
Query: 811 VLVIKDGKITQAGKYTDVINSGTDF 835
V V+ +G+I + GK ++ ++
Sbjct: 197 VAVMLNGRIVEKGKLKELFSAKNGE 221
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 62.9 bits (154), Expect = 7e-11
Identities = 54/215 (25%), Positives = 100/215 (46%), Gaps = 42/215 (19%)
Query: 1280 IVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSIIPQD----PVMF 1335
++G TG+GKS ++ + IV+P G++ ++G DI+ + R + +PQD P +
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGFVPQDYALFPHL- 85
Query: 1336 EGTVRSNVD------PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQ 1389
+V N+ E D ++ E +K + + +K +L S G+
Sbjct: 86 --SVYRNIAYGLRNVERVE-RDRRVREMAEKLGIAHLLDRKPARL-----------SGGE 131
Query: 1390 RQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLR--QHFSDCTVITIAHRITSVI 1447
RQ V L R L+ + ++L+LDE ++VD T ++ + LR Q D ++ + H
Sbjct: 132 RQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTH------ 185
Query: 1448 D-------SDMVLLLSHGLIEEYDSPRKLLENKSS 1475
D +D V ++ +G I E ++L K+
Sbjct: 186 DLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNG 220
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 78.4 bits (194), Expect = 5e-16
Identities = 63/226 (27%), Positives = 95/226 (42%), Gaps = 65/226 (28%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILG--EVPKISGTLKLCGTKAYVAQSP--- 690
LK++NL + G V++ G GSGKS++L+ I+G + P G + + K
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLN-IIGCLDKPT-EGEVYIDNIK--TNDLDDDE 76
Query: 691 --WIQSGKI---------------EDNIL----------FGKEMDRERYNAVLDACSLEK 723
I+ KI +N+ E R+R L L
Sbjct: 77 LTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAEL-- 134
Query: 724 DLEILSFGDQTVVGERGIN-----LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTG 778
ER N LSGGQ+QR+ IARAL + I L D P A+D+ TG
Sbjct: 135 -------------EERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTG 181
Query: 779 SHLFKEV--LLGLLNS---KTVLYVTHQVEFLPAADLVLVIKDGKI 819
+++ LL LN KTV+ VTH + + ++ +KDG++
Sbjct: 182 ----EKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 4e-07
Identities = 53/242 (21%), Positives = 100/242 (41%), Gaps = 58/242 (23%)
Query: 1264 VLRGISCTF-PGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDL- 1321
L+ ++ GE I+G +GSGKST++ + + +P G++ ID I + + +L
Sbjct: 20 ALKNVNLNIKEGEF-VSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELT 78
Query: 1322 ---RTRLSIIPQD----PVMFEGTVRSNVD-PLEEYTD----------EQIWEALDKCQL 1363
R ++ + Q P++ T NV+ PL + ++ E L +L
Sbjct: 79 KIRRDKIGFVFQQFNLIPLL---TALENVELPL-IFKYRGAMSGEERRKRALECLKMAEL 134
Query: 1364 GDEVRK-KEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNL 1422
+ K +L S GQ+Q V + R L I++ D+ T ++D+ T
Sbjct: 135 EERFANHKPNQL-----------SGGQQQRVAIARALANNPPIILADQPTWALDSKTGEK 183
Query: 1423 IQQSLRQ-HFSD-CTVITI---------AHRITSVIDSDMVLLLSHGLIEEYDSPRKLLE 1471
I Q L++ + D TV+ + RI + D G +E + + +
Sbjct: 184 IMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKD---------GEVER-EEKLRGFD 233
Query: 1472 NK 1473
++
Sbjct: 234 DR 235
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 78.7 bits (195), Expect = 5e-16
Identities = 48/235 (20%), Positives = 109/235 (46%), Gaps = 30/235 (12%)
Query: 1248 IDLRDLQVRYAPHMPFVLRGISCT-FPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQI 1306
+ ++DL+ R +L+GIS GE G++G G+GK+T ++ + +++P++G +
Sbjct: 16 VVVKDLRKRIGKKE--ILKGISFEIEEGEI-FGLIGPNGAGKTTTLRIISTLIKPSSGIV 72
Query: 1307 LIDGIDISLIGLHDLRTRLSIIPQDPVMFEG-TVRSNVD--------PLEEYTDEQIWEA 1357
+ G ++ H++R +S +P++ + + E +E + A
Sbjct: 73 TVFGKNVVE-EPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSE-IEEMVERA 130
Query: 1358 LDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDT 1417
+ LG+ K+ +V +S G + + + R L+ ++ +LDE T+ +D
Sbjct: 131 TEIAGLGE-------KIKDRV----STYSKGMVRKLLIARALMVNPRLAILDEPTSGLDV 179
Query: 1418 ATDNLIQQSLRQHFSD-CTVITIAHRITSVID--SDMVLLLSHGLIEEYDSPRKL 1469
+++ L+Q + T++ +H ++ D + L+ +G I E + +L
Sbjct: 180 LNAREVRKILKQASQEGLTILVSSH-NMLEVEFLCDRIALIHNGTIVETGTVEEL 233
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 66.4 bits (163), Expect = 7e-12
Identities = 44/239 (18%), Positives = 83/239 (34%), Gaps = 51/239 (21%)
Query: 610 PRGSSETAIEIAD-----GNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLS 664
A+ + D G LK I+ ++ G + G G+GK++ L
Sbjct: 8 HHHHHMGAVVVKDLRKRIGKK--------EILKGISFEIEEGEIFGLIGPNGAGKTTTLR 59
Query: 665 CILGEVPKISGTLKLCGTKA------------YVAQSPWIQSG-KIEDNILF-------G 704
I + SG + + G Y+ + + + + F
Sbjct: 60 IISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASS 119
Query: 705 KEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIY 764
E + L + + +R S G +++ IARAL + +
Sbjct: 120 SSEIEEMVERATEIAGLGE-----------KIKDRVSTYSKGMVRKLLIARALMVNPRLA 168
Query: 765 LFDDPFSAVDAHTGSHLFKEVLLGLLNS-KTVLYVTH---QVEFLPAADLVLVIKDGKI 819
+ D+P S +D + +++L T+L +H +VEFL D + +I +G I
Sbjct: 169 ILDEPTSGLDVLN-AREVRKILKQASQEGLTILVSSHNMLEVEFL--CDRIALIHNGTI 224
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 80.3 bits (199), Expect = 5e-16
Identities = 63/215 (29%), Positives = 96/215 (44%), Gaps = 47/215 (21%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILG-EVPKISGTLKLCGTK----------- 683
L +++LKV G + G G+GK+ L I G VP SG + L G
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD-SGRILLDGKDVTDLSPEKHDI 74
Query: 684 AYVAQS----PWIQSGKIEDNILFGKEMDR----ERYNAVLDACSLEKDLEILSFGDQTV 735
A+V Q+ P + ++ N+ FG M + +R +E
Sbjct: 75 AFVYQNYSLFPHM---NVKKNLEFGMRMKKIKDPKRVLDTARDLKIEH------------ 119
Query: 736 VGERGIN-LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVL-----LGL 789
+ +R LSGG++QR+ +ARAL + I L D+P SA+D T + + + L
Sbjct: 120 LLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKL 179
Query: 790 LNSKTVLYVTH-QVEFLPAADLVLVIKDGKITQAG 823
TVL++TH Q E AD + V+ DGK+ Q G
Sbjct: 180 ----TVLHITHDQTEARIMADRIAVVMDGKLIQVG 210
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 53.3 bits (129), Expect = 3e-07
Identities = 53/255 (20%), Positives = 105/255 (41%), Gaps = 49/255 (19%)
Query: 1248 IDLRDLQVRYAPHMPFVLRGISCT-FPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQI 1306
I++ L ++ F L +S GE I+G TG+GK+ ++ + P +G+I
Sbjct: 2 IEIESLSRKWKN---FSLDNLSLKVESGEYFV-ILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 1307 LIDGIDISLIGLHDLRTR-LSIIPQD----PVMFEGTVRSNVD-PLE---EYTDEQIWEA 1357
L+DG D++ + ++ + Q+ P M V+ N++ + +++ +
Sbjct: 58 LLDGKDVTDLSPEK---HDIAFVYQNYSLFPHM---NVKKNLEFGMRMKKIKDPKRVLDT 111
Query: 1358 LDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDT 1417
++ + + L S G++Q V L R L+ KIL+LDE +++D
Sbjct: 112 ARDLKIEHLLDRNPLTL-----------SGGEQQRVALARALVTNPKILLLDEPLSALDP 160
Query: 1418 ATDNLIQQSLR--QHFSDCTVITIAHRITSVID-------SDMVLLLSHGLIEEYDSPRK 1468
T ++ L + TV+ I H D +D + ++ G + + P +
Sbjct: 161 RTQENAREMLSVLHKKNKLTVLHITH------DQTEARIMADRIAVVMDGKLIQVGKPEE 214
Query: 1469 LLENKSSSFSQLVAE 1483
+ E VA
Sbjct: 215 IFEKPVEGR---VAS 226
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 80.4 bits (199), Expect = 5e-16
Identities = 61/213 (28%), Positives = 94/213 (44%), Gaps = 40/213 (18%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILG-EVPKISGTLKLCGTKAYVAQSPW--- 691
++ ++ ++ G V + G GSGK+++L I G E P G + + G + P
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT-KGDVWIGGKRV-TDLPPQKRN 88
Query: 692 ----IQS------GKIEDNILFGKEMDR----ERYNAVLDACSLEKDLEILSFGDQTVVG 737
Q+ + DN+ FG R E V + L +
Sbjct: 89 VGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVREL------LRFMRLES---YA 139
Query: 738 ERGIN-LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVL-----LGLLN 791
R + LSGGQ+QR+ +ARAL + LFD+PF+A+D L V +G+
Sbjct: 140 NRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGV-- 197
Query: 792 SKTVLYVTH-QVEFLPAADLVLVIKDGKITQAG 823
T ++VTH Q E L AD VLV+ +G + Q G
Sbjct: 198 --TSVFVTHDQEEALEVADRVLVLHEGNVEQFG 228
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 1e-07
Identities = 63/265 (23%), Positives = 110/265 (41%), Gaps = 64/265 (24%)
Query: 1248 IDLRDLQVRYAPHMPFVLRGISCTFP-GEKKTGIVGRTGSGKSTLIQTLFRIV----EPA 1302
I+ ++ Y +RG+S GE ++G +GSGK+T++ R++ P
Sbjct: 15 IEFVGVEKIYPGGAR-SVRGVSFQIREGEMVG-LLGPSGSGKTTIL----RLIAGLERPT 68
Query: 1303 AGQILIDGIDISLIGLHDLRTRLSIIPQD----PVMFEGTVRSNV-------DPLEEYTD 1351
G + I G ++ + R + ++ Q+ M TV NV ++ D
Sbjct: 69 KGDVWIGGKRVTDLPPQK-R-NVGLVFQNYALFQHM---TVYDNVSFGLREKRVPKDEMD 123
Query: 1352 EQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEA 1411
++ E L +L + +L S GQ+Q V L R L R ++L+ DE
Sbjct: 124 ARVRELLRFMRLESYANRFPHEL-----------SGGQQQRVALARALAPRPQVLLFDEP 172
Query: 1412 TASVDTATDNLIQQSLRQHFSDCTVITIAHR---ITSVI---D-------SDMVLLLSHG 1458
A++DT ++ +RQ H +TSV D +D VL+L G
Sbjct: 173 FAAIDTQIRRELRTFVRQ----------VHDEMGVTSVFVTHDQEEALEVADRVLVLHEG 222
Query: 1459 LIEEYDSPRKLLENKSSSFSQLVAE 1483
+E++ +P ++ E + F VA
Sbjct: 223 NVEQFGTPEEVYEKPGTLF---VAS 244
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 78.5 bits (194), Expect = 3e-15
Identities = 65/272 (23%), Positives = 117/272 (43%), Gaps = 33/272 (12%)
Query: 1226 PSEPPLEIEESRPNHSWPSHGKIDLRDLQVRYAPHMPFV--LRGISCTFPGEKKTGIVGR 1283
+ I L ++ + + L +S P + G++G
Sbjct: 5 HHHHHHHHSSGHIDDDDKHM--IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGA 62
Query: 1284 TGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRT-RLSI--IPQD-PVMFEGTV 1339
+G+GKSTLI+ + + P G +L+DG +++ + +L R I I Q ++ TV
Sbjct: 63 SGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTV 122
Query: 1340 RSNVD-PLE------EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQL 1392
NV PLE + ++ E L LGD+ L S GQ+Q
Sbjct: 123 FGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNL-----------SGGQKQR 171
Query: 1393 VCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLR---QHFSDCTVITIAHRITSVIDS 1449
V + R L K+L+ D+AT+++D AT I + L+ + T++ I H + V+
Sbjct: 172 VAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRL-GLTILLITHEM-DVVKR 229
Query: 1450 --DMVLLLSHGLIEEYDSPRKLLENKSSSFSQ 1479
D V ++S+G + E D+ ++ + + +Q
Sbjct: 230 ICDCVAVISNGELIEQDTVSEVFSHPKTPLAQ 261
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 72.0 bits (177), Expect = 3e-13
Identities = 57/222 (25%), Positives = 94/222 (42%), Gaps = 43/222 (19%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCI-LGEVPKISGTLKLCGT-------KAYVA 687
L +++L V G V G G+GKS+L+ C+ L E P G++ + G
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT-EGSVLVDGQELTTLSESELTK 102
Query: 688 QSPWI----------QSGKIEDNILF-------GKEMDRERYNAVLDACSLEKDLEILSF 730
I S + N+ K+ + R +L L + S+
Sbjct: 103 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHD--SY 160
Query: 731 GDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL 790
LSGGQKQR+ IARAL + + L D SA+D T + + LL +
Sbjct: 161 PSN---------LSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILE--LLKDI 209
Query: 791 NSK---TVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYTDV 828
N + T+L +TH+++ + D V VI +G++ + ++V
Sbjct: 210 NRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV 251
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 78.1 bits (193), Expect = 3e-15
Identities = 55/218 (25%), Positives = 88/218 (40%), Gaps = 41/218 (18%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILG-EVPKISGTLKLCGTKAYVAQSPWI 692
L ++N+ + +G R + G G+GK++ + I G +VP +G L +
Sbjct: 19 VALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS-TGELYFDDRLVASNGKLIV 77
Query: 693 QSGK-----------------IEDNILFG---KEMDR-ERYNAVLDACSLEKDLEILSFG 731
+NI F +M + E V + + L+I
Sbjct: 78 PPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKI---LDIHHVL 134
Query: 732 DQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVL----- 786
+ LSG Q+QR+ +ARAL +D + L D+PFS +DA V
Sbjct: 135 NH-----FPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSR 189
Query: 787 LGLLNSKTVLYVTH-QVEFLPAADLVLVIKDGKITQAG 823
LG+ T+L V+H + AD V V+ GK+ Q G
Sbjct: 190 LGV----TLLVVSHDPADIFAIADRVGVLVKGKLVQVG 223
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 3e-05
Identities = 52/277 (18%), Positives = 95/277 (34%), Gaps = 82/277 (29%)
Query: 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIV----EPA 1302
+I ++++ + L ++ ++ GI+G +G+GK+T + RI+ P+
Sbjct: 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFM----RIIAGLDVPS 58
Query: 1303 AGQILIDGIDISLIGLHDLRTRLSIIPQD-------------PVMFEGTVRSNVD-PLE- 1347
G++ D ++ G + P+D P + T N+ PL
Sbjct: 59 TGELYFDDRLVASNGKLIVP------PEDRKIGMVFQTWALYPNL---TAFENIAFPLTN 109
Query: 1348 -----EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKR 1402
E +++ E + + +L S Q+Q V L R L+K
Sbjct: 110 MKMSKEEIRKRVEEVAKILDIHHVLNHFPREL-----------SGAQQQRVALARALVKD 158
Query: 1403 RKILMLDE------ATASVDTATD-NLIQQSLRQHFSDCTVI----------TIAHRITS 1445
+L+LDE A +Q L T++ IA R+
Sbjct: 159 PSLLLLDEPFSNLDARMRDSARALVKEVQSRL-----GVTLLVVSHDPADIFAIADRV-- 211
Query: 1446 VIDSDMVLLLSHGLIEEYDSPRKLLENKSSSFSQLVA 1482
+ L G + + P L +N S VA
Sbjct: 212 GV-------LVKGKLVQVGKPEDLYDNPVSIQ---VA 238
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 80.1 bits (197), Expect = 4e-15
Identities = 55/257 (21%), Positives = 99/257 (38%), Gaps = 31/257 (12%)
Query: 581 MTIQTKVSLQRIASFFCLDELQPDLVEKQPRGSSETAIEIADGNFSWDISSHNPTLKDIN 640
+ + I F + V + ++ + FS + L
Sbjct: 397 TIFLHEKKAKDILDEFRKRAVDNIPVGPNFDDEEDEGEDLCNCEFSLAYGAK-ILLNKTQ 455
Query: 641 LKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK-AYVAQSPWIQSGKIED 699
L++ R +CG G GKS+L+ I ++ G + YV I +
Sbjct: 456 LRLKRARRYGICGPNGCGKSTLMRAIANG--QVDGFPTQEECRTVYVEHD--IDGTHSDT 511
Query: 700 NIL-FGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGI-NLSGGQKQRIQIARAL 757
++L F E A+ + L F D+ + I LSGG K ++ +ARA+
Sbjct: 512 SVLDFVFESGVGTKEAI------KDKLIEFGFTDEMI--AMPISALSGGWKMKLALARAV 563
Query: 758 YQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL---LNS--KTVLYVTHQVEFL-PAADLV 811
++ADI L D+P T +HL + L LN+ T + ++H FL + +
Sbjct: 564 LRNADILLLDEP-------T-NHLDTVNVAWLVNYLNTCGITSITISHDSVFLDNVCEYI 615
Query: 812 LVIKDGKITQ-AGKYTD 827
+ + K+ + G +T+
Sbjct: 616 INYEGLKLRKYKGNFTE 632
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 62.4 bits (151), Expect = 9e-10
Identities = 43/195 (22%), Positives = 67/195 (34%), Gaps = 28/195 (14%)
Query: 1249 DLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILI 1308
DL + + A +L ++ GI G G GKSTL++ I
Sbjct: 435 DLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMR-------------AI 481
Query: 1309 DGIDISLIGLHDLRTRLSIIPQDPVMFEG--TVRSNVDPLEEYTDEQIWEALDKCQLGDE 1366
+ + R + D +V V T E I + L + DE
Sbjct: 482 ANGQVDGFPTQE-ECRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDE 540
Query: 1367 VRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQS 1426
+ ++ S G + + L R +L+ IL+LDE T +DT +
Sbjct: 541 ------MIAMPISA----LSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNY 590
Query: 1427 LRQHFSDCTVITIAH 1441
L T ITI+H
Sbjct: 591 LNT--CGITSITISH 603
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 57.0 bits (137), Expect = 5e-08
Identities = 32/129 (24%), Positives = 54/129 (41%), Gaps = 15/129 (11%)
Query: 705 KEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIY 764
KE L +E+ +L + V R LSGGQK ++ +A +Q +
Sbjct: 864 KEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLI 923
Query: 765 LFDDPFSAVDAHTGSHLFKEVLLGL---LNS--KTVLYVTHQVEFLPA-ADLVLVIKDGK 818
+ D+P T ++L ++ L L L V+ +TH EF + V +KDG+
Sbjct: 924 VLDEP-------T-NYLDRDSLGALSKALKEFEGGVIIITHSAEFTKNLTEEVWAVKDGR 975
Query: 819 ITQ-AGKYT 826
+T +
Sbjct: 976 MTPSGHNWV 984
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 54.7 bits (131), Expect = 2e-07
Identities = 34/181 (18%), Positives = 69/181 (38%), Gaps = 10/181 (5%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK---AYVAQSP 690
P + DIN + R+AV G G+GKS+L++ + GE+ SG + AY+ Q
Sbjct: 687 PQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYT-HENCRIAYIKQHA 745
Query: 691 WIQSGKIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQR 750
+ D E + R+ D ++++ ++ D + + I G +R
Sbjct: 746 FAHIESHLDKTPS--EYIQWRFQTGEDRETMDRANRQINENDAEAMNK--IFKIEGTPRR 801
Query: 751 IQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVL--YVTHQVEFLPAA 808
I + + + Y ++ F + ++ + N+ V + +
Sbjct: 802 IAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEV 861
Query: 809 D 809
D
Sbjct: 862 D 862
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 46.6 bits (110), Expect = 6e-05
Identities = 29/185 (15%), Positives = 61/185 (32%), Gaps = 3/185 (1%)
Query: 1250 LRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILI- 1308
+ +++ +Y + I+ + ++G G+GKSTLI L + P +G++
Sbjct: 674 VTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTH 733
Query: 1309 DGIDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVR 1368
+ I+ I H S + + P + + E + + +++
Sbjct: 734 ENCRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIF 793
Query: 1369 KKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLR 1428
K EG + + C + SVD A + + L
Sbjct: 794 KIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNA--WIPRGELV 851
Query: 1429 QHFSD 1433
+ S
Sbjct: 852 ESHSK 856
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 72.2 bits (178), Expect = 3e-13
Identities = 70/218 (32%), Positives = 97/218 (44%), Gaps = 46/218 (21%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILG-EVPKISGTLKLCGTK--------- 683
L +INLK+ G +A+ G GSGKS+LL I G P SG +
Sbjct: 17 TALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPT-SGKIYFDEKDVTELPPKDR 75
Query: 684 --AYVAQS----PWIQSGKIEDNILFG----KEMDRERYNAVLDACSLEKDLEILSFGDQ 733
V Q+ P + + NI F K E V + + L I ++
Sbjct: 76 NVGLVFQNWALYPHM---TVYKNIAFPLELRKAPREEIDKKVREVAKM---LHIDKLLNR 129
Query: 734 TVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDA-------HTGSHLFKEVL 786
LSGGQ+QR+ IARAL ++ ++ L D+P S +DA L KE
Sbjct: 130 -----YPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKE-- 182
Query: 787 LGLLNSKTVLYVTH-QVEFLPAADLVLVIKDGKITQAG 823
LG+ T +YVTH Q E L AD + VI++G+I Q G
Sbjct: 183 LGI----TTVYVTHDQAEALAMADRIAVIREGEILQVG 216
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 68.4 bits (168), Expect = 4e-12
Identities = 57/216 (26%), Positives = 89/216 (41%), Gaps = 42/216 (19%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILG-EVPKIS-GTLKLCGTK-------- 683
+ ++ +V G VA+ G G GK++ L + G K + G +
Sbjct: 17 KAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIY--KPTSGEIYFDDVLVNDIPPKY 74
Query: 684 ---AYVAQS----PWIQSGKIEDNILFGKEMDR----ERYNAVLDACSLEKDLEILSFGD 732
V Q+ P + + +NI F R E V++ L I + D
Sbjct: 75 REVGMVFQNYALYPHM---TVFENIAFPLRARRISKDEVEKRVVEIARK---LLIDNLLD 128
Query: 733 QTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDA----HTGSHLFKEVLLG 788
+ + LSGGQ+QR+ +ARAL + + LFD+P S +DA + + L
Sbjct: 129 R-----KPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKH--LQQ 181
Query: 789 LLNSKTVLYVTH-QVEFLPAADLVLVIKDGKITQAG 823
L T +YVTH Q E + A + V GK+ Q G
Sbjct: 182 ELGI-TSVYVTHDQAEAMTMASRIAVFNQGKLVQYG 216
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 66.9 bits (164), Expect = 2e-11
Identities = 59/216 (27%), Positives = 90/216 (41%), Gaps = 42/216 (19%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILG--EVPKISGTLKLCGTK-------- 683
+ +NL + G + + G G GK++ L I G E G +
Sbjct: 25 TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT--EGRIYFGDRDVTYLPPKD 82
Query: 684 ---AYVAQS----PWIQSGKIEDNILFG----KEMDRERYNAVLDACSLEKDLEILSFGD 732
+ V QS P + + +NI F K E V A L L+I +
Sbjct: 83 RNISMVFQSYAVWPHM---TVYENIAFPLKIKKFPKDEIDKRVRWAAEL---LQIEELLN 136
Query: 733 QTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDA----HTGSHLFKEVLLG 788
+ LSGGQ+QR+ +ARA+ + D+ L D+P S +DA + + K L
Sbjct: 137 R-----YPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKK--LQQ 189
Query: 789 LLNSKTVLYVTH-QVEFLPAADLVLVIKDGKITQAG 823
L T +YVTH QVE + D + V+ G++ Q G
Sbjct: 190 KLKV-TTIYVTHDQVEAMTMGDRIAVMNRGQLLQIG 224
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 65.3 bits (160), Expect = 4e-11
Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 8/87 (9%)
Query: 742 NLSGGQKQRIQIARALYQDADIYLFDDPFSAVDA----HTGSHLFKEVLLGLLNSKTVLY 797
LSGGQ+QR+ + RA+ + ++L D+P S +DA + L K L L T +Y
Sbjct: 139 ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKK--LQRQLGV-TTIY 195
Query: 798 VTH-QVEFLPAADLVLVIKDGKITQAG 823
VTH QVE + D + V+ G + Q G
Sbjct: 196 VTHDQVEAMTMGDRIAVMNRGVLQQVG 222
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 63.6 bits (156), Expect = 5e-11
Identities = 43/172 (25%), Positives = 83/172 (48%), Gaps = 24/172 (13%)
Query: 1249 DLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILI 1308
+++ L V Y ++GI P + ++G G+GK+T + + +V G+I+
Sbjct: 8 EVQSLHVYYGAIH--AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIF 65
Query: 1309 DGIDISLIGLHDL-RTRLSIIPQDPVMFEG-TVRSNVDPLEEYT---DEQIWEALDKC-- 1361
+G DI+ H + R ++++P+ +F TV N+ + Y E I L+
Sbjct: 66 NGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLM-MGAYNRKDKEGIKRDLEWIFS 124
Query: 1362 ---QLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDE 1410
+L + +++ G L S G++Q++ +GR L+ R K+LM+DE
Sbjct: 125 LFPRLKERLKQLGGTL-----------SGGEQQMLAIGRALMSRPKLLMMDE 165
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 47.1 bits (113), Expect = 2e-05
Identities = 41/163 (25%), Positives = 67/163 (41%), Gaps = 47/163 (28%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-----------KA 684
+K I+LKV G V + G G+GK++ LS I G V G + G +
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRM 81
Query: 685 YVAQSPWIQSGK-------IEDNILFGKEMDRERYNAVLDACSLEKDLE-------ILSF 730
+A P G+ + +N++ G +++ +++DLE L
Sbjct: 82 GIALVP---EGRRIFPELTVYENLMMGAYNRKDKEG-------IKRDLEWIFSLFPRL-- 129
Query: 731 GDQTVVGER----GINLSGGQKQRIQIARALYQDADIYLFDDP 769
ER G LSGG++Q + I RAL + + D+P
Sbjct: 130 ------KERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEP 166
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 62.2 bits (152), Expect = 5e-10
Identities = 33/87 (37%), Positives = 50/87 (57%), Gaps = 8/87 (9%)
Query: 743 LSGGQKQRIQIARALYQDADIYLFDDPFSAVDA----HTGSHLFKEVLLGLLNSKTVLYV 798
LSGGQ+QR+ I R L + ++L D+P S +DA + + L L T++YV
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISR--LHKRLGR-TMIYV 190
Query: 799 TH-QVEFLPAADLVLVIKDGKITQAGK 824
TH QVE + AD ++V+ G++ Q GK
Sbjct: 191 THDQVEAMTLADKIVVLDAGRVAQVGK 217
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.5 bits (143), Expect = 8e-09
Identities = 57/352 (16%), Positives = 115/352 (32%), Gaps = 97/352 (27%)
Query: 572 IYKLPAIISMTIQTKVSL----QRIASFFCLDELQPD---LVE------KQPRGSSETAI 618
I +S T++ +L + + F + L+ + L+ +QP + I
Sbjct: 54 IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI 113
Query: 619 EIADGNFS-------WDISSHNP--TLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGE 669
E D ++ +++S P L+ L++ V + G +GSGK+ +
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV------- 166
Query: 670 VPKISGTLKLCGTKAYVAQSP----WIQSGKI--EDNILFGKEMDRERYNAVLDACSLEK 723
L +C + + W+ + +L EM L +
Sbjct: 167 ------ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL---EM--------LQKLLYQI 209
Query: 724 DLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDA-----DIY------LFD----- 767
D S D + + I+ S + R + Y++ ++ F+
Sbjct: 210 DPNWTSRSDHSSNIKLRIH-SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI 268
Query: 768 -------DPFSAVDAHTGSHLF-KEVLLGLL--NSKTVL--YVTHQVEFLP--AAD---L 810
+ A T +H+ + L K++L Y+ + + LP
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328
Query: 811 VL-----VIKDGKITQAGKYTDVINSGTDFMELVDAHKQALSTLDSIEGRPL 857
L I+DG T +N +L + +L+ L+ E R +
Sbjct: 329 RLSIIAESIRDGLATW--DNWKHVN----CDKLTTIIESSLNVLEPAEYRKM 374
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 58.7 bits (141), Expect = 1e-08
Identities = 48/395 (12%), Positives = 108/395 (27%), Gaps = 120/395 (30%)
Query: 1202 LIWLACQMENKIIS--VERI-----------FQYTCI-PSEPPLEIEESRPNHSWPSHGK 1247
L W + +++ VE + + PS E R + + +
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR-DRLYNDNQV 125
Query: 1248 IDLRDLQV-RYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTL-IQTL--FRIVEPAA 1303
V R P++ LR K I G GSGK+ + + +++
Sbjct: 126 --FAKYNVSRLQPYL--KLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD 181
Query: 1304 GQIL------IDGIDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNVDPLEEYT------- 1350
+I + + L L L ++ ++ + ++
Sbjct: 182 FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK 241
Query: 1351 -------------DEQIWEALD-KCQ---------LGDEVRKKEGKLDSKVTENGENWSM 1387
+ + W A + C+ + D + + ++ + + ++
Sbjct: 242 PYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFL---SAATTTHISLDHHSMTL 298
Query: 1388 GQRQL------------------VCLGRVLL---------------KRRKILMLDEATAS 1414
++ V K + D+ T
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI 358
Query: 1415 VDTATDNLIQQSLRQHFSDCTV------ITIA-------HRITSVIDSDMVLLLSHGLIE 1461
++++ + L R+ F +V I I S + + L + L+E
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418
Query: 1462 E------------YDSPRKLLENKSSSFSQLVAEY 1484
+ Y + LEN+ + +V Y
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEYALHRSIVDHY 453
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.9 bits (118), Expect = 6e-06
Identities = 61/441 (13%), Positives = 131/441 (29%), Gaps = 122/441 (27%)
Query: 1116 STTIRSFD-----QES---RFIDTNME-----LMDGYSRPTFHVAAAMEWLGFRLDMLSN 1162
S T+R F QE +F++ + LM + + D L N
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121
Query: 1163 ITFAFSLVFLISIPKGF--IDPAIAGLAVTYGLTLNNLQAML----IWLA---------- 1206
F+ +S + + + A+ L + + +L W+A
Sbjct: 122 DNQVFAKYN-VSRLQPYLKLRQALLELRPAKNVLI---DGVLGSGKTWVALDVCLSYKVQ 177
Query: 1207 CQMENKI--ISVER---------IFQYTC------------IPSEPPLEIEESRPNHS-- 1241
C+M+ KI ++++ + Q S L I +
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237
Query: 1242 --WPSHGK--IDLRDLQVRYAPHM-PFVLRGISC----TFPGEKKTGIVGRTGSGKSTLI 1292
+ + L + V+ A F +SC T ++ T + + +L
Sbjct: 238 LKSKPYENCLLVLLN--VQNAKAWNAF---NLSCKILLTTRFKQVTDFLSAATTTHISLD 292
Query: 1293 QTLFRIVEPAAGQILIDGIDISLIGLHDLRTR-LSIIPQDPVMFEGTVRSNV---DPLEE 1348
+ +L+ +D DL L+ P+ + ++R + D +
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRP---QDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH 349
Query: 1349 YTDEQIWEALDKC--QLG-DEVRKKEGKL-----DSKVTEN--GENWSMGQRQLV----- 1393
+++ ++ L E RK +L + + W + V
Sbjct: 350 VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN 409
Query: 1394 -CLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMV 1452
L++++ E+T S+ I L+ + + HR
Sbjct: 410 KLHKYSLVEKQP----KESTISI-----PSIYLELKVKLENEYAL---HRS--------- 448
Query: 1453 LLLSHGLIEEYDSPRKLLENK 1473
+++ Y+ P+ +
Sbjct: 449 ------IVDHYNIPKTFDSDD 463
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 50.4 bits (120), Expect = 3e-06
Identities = 25/136 (18%), Positives = 45/136 (33%), Gaps = 17/136 (12%)
Query: 696 KIEDNILFGKEMDRERYNAVLDACSLEKDLEILS----FGDQTVVGERGIN-----LSGG 746
E + + + K E++ + V G LSGG
Sbjct: 193 YKALAREAALSKIGELASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGG 252
Query: 747 QKQRIQIA------RALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNS-KTVLYVT 799
++ + +A L + + + D+P +D L ++ L V+ V+
Sbjct: 253 ERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKL-ITIMERYLKKIPQVILVS 311
Query: 800 HQVEFLPAADLVLVIK 815
H E AAD V+ I
Sbjct: 312 HDEELKDAADHVIRIS 327
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 6e-06
Identities = 48/209 (22%), Positives = 91/209 (43%), Gaps = 43/209 (20%)
Query: 1278 TGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDL------RT-------- 1323
T I+G GSGKSTLI + ++ G++ + DI+ +L RT
Sbjct: 36 TLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLK 95
Query: 1324 RLSIIPQDPVM--FEGTVRSNVDPL--------EEYTDEQIWEALDKCQLGDEVRKKEGK 1373
++++ + ++ S ++ L EE E+ ++ L+ +L +K G+
Sbjct: 96 EMTVL--ENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGE 153
Query: 1374 LDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASV-DTATDNLIQ--QSLRQH 1430
L S GQ +LV +GR L+ K++++DE A V ++ L+
Sbjct: 154 L-----------SGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK 202
Query: 1431 FSDCTVITIAHRITSVID-SDMVLLLSHG 1458
T + I HR+ V++ D + ++ +G
Sbjct: 203 --GITFLIIEHRLDIVLNYIDHLYVMFNG 229
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 3e-04
Identities = 21/100 (21%), Positives = 39/100 (39%), Gaps = 9/100 (9%)
Query: 721 LEKDLEILSFGDQTVVGERGIN-LSGGQKQRIQIA------RALYQDADIYLFDDPFSAV 773
+ + + ER + LSGG++ + +A L + + + D+P +
Sbjct: 35 VRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYL 94
Query: 774 DAHTGSHLFKEVLLGLLNS-KTVLYVTHQVEFLPAADLVL 812
D L ++ L V+ V+H E AAD V+
Sbjct: 95 DEERRRKLI-TIMERYLKKIPQVILVSHDEELKDAADHVI 133
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* Length = 301 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 7e-04
Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 12/85 (14%)
Query: 1280 IVGRTGSGKSTLIQTLF-----------RIVEPAAGQILIDGIDISLIGLHDLRTRLSII 1328
+VG +G GKSTLI +LF E + I+ + + ++ RL+++
Sbjct: 23 VVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEE-RGVKLRLTVV 81
Query: 1329 PQDPVMFEGTVRSNVDPLEEYTDEQ 1353
R + Y DEQ
Sbjct: 82 DTPGYGDAINCRDCFKTIISYIDEQ 106
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1495 | ||||
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 4e-69 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 2e-58 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 7e-65 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 7e-54 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 2e-64 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 4e-56 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 5e-62 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 1e-46 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 2e-58 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 2e-51 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 1e-56 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 4e-48 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 1e-32 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 1e-25 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 5e-32 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 8e-30 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 7e-32 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 1e-29 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 7e-32 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 3e-24 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 3e-28 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 3e-24 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 7e-28 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 2e-24 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 2e-27 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 2e-25 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 3e-26 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 3e-24 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 3e-26 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 2e-23 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 1e-25 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 2e-25 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 3e-25 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 5e-25 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 2e-23 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 6e-21 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 5e-23 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 6e-23 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 3e-22 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 1e-19 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 2e-16 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 3e-13 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 3e-09 | |
| d2hyda2 | 323 | f.37.1.1 (A:1-323) Putative multidrug export ATP-b | 2e-06 | |
| d3b60a2 | 319 | f.37.1.1 (A:10-328) Multidrug resistance ABC trans | 2e-06 | |
| d3b60a2 | 319 | f.37.1.1 (A:10-328) Multidrug resistance ABC trans | 3e-04 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 2e-06 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 7e-06 |
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 230 bits (589), Expect = 4e-69
Identities = 74/258 (28%), Positives = 138/258 (53%), Gaps = 12/258 (4%)
Query: 1226 PSEPPLEIEESRPNHSWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTG 1285
P+EI++ G+ID+ + +Y + +L+ I+ + + VG +G
Sbjct: 5 VGAQPIEIKQ----------GRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSG 54
Query: 1286 SGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNV-D 1344
GKSTLI + R + +GQILIDG +I LR ++ ++ QD ++F TV+ N+
Sbjct: 55 GGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILL 114
Query: 1345 PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRK 1404
TDE++ EA D + D++V E G S GQ+Q + + R+ L
Sbjct: 115 GRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPP 174
Query: 1405 ILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYD 1464
IL+LDEAT+++D ++++IQ++L D T + +AHR++++ +D ++++ +G I E
Sbjct: 175 ILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETG 234
Query: 1465 SPRKLLENKSSSFSQLVA 1482
+ R+L+ + ++ L +
Sbjct: 235 THRELIAKQ-GAYEHLYS 251
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 200 bits (509), Expect = 2e-58
Identities = 75/252 (29%), Positives = 117/252 (46%), Gaps = 16/252 (6%)
Query: 604 DLVEKQPRGSSETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLL 663
+ V QP + I+I +F ++ + P LKDINL + G VA G G GKS+L+
Sbjct: 3 NGVGAQPIEIKQGRIDIDHVSFQYN-DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLI 61
Query: 664 SCILGEVPKISGTLKLCGTK-------------AYVAQSPWIQSGKIEDNILFGKEM-DR 709
+ I SG + + G V Q + S +++NIL G+
Sbjct: 62 NLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATD 121
Query: 710 ERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDP 769
E + + L G T VGERG+ LSGGQKQR+ IAR + I + D+
Sbjct: 122 EEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEA 181
Query: 770 FSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVI 829
SA+D + S + +E L L +T L V H++ + AD ++VI++G I + G + ++I
Sbjct: 182 TSALDLESESII-QEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELI 240
Query: 830 NSGTDFMELVDA 841
+ L
Sbjct: 241 AKQGAYEHLYSI 252
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 219 bits (559), Expect = 7e-65
Identities = 94/277 (33%), Positives = 155/277 (55%), Gaps = 4/277 (1%)
Query: 585 TKVSLQRIASFFCLDELQPDLVEKQPRGSSETAIEIADGN--FSWDISSHNPTLKDINLK 642
T + ++ + +F+ +E +L+EK + + + + N FS NP LK+INL
Sbjct: 1 TGIIMENVTAFW--EEGFGELLEKVQQSNGDRKHSSDENNVSFSHLCLVGNPVLKNINLN 58
Query: 643 VFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNIL 702
+ G +A+ G+ GSGK+SLL ILGE+ G +K G ++ +Q WI G I++NI+
Sbjct: 59 IEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIKENII 118
Query: 703 FGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDAD 762
FG D RY +V+ AC L++D+ + D TV+GE G+ LSGGQ+ RI +ARA+Y+DAD
Sbjct: 119 FGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDAD 178
Query: 763 IYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQA 822
+YL D PF +D T +F+ + L+ +KT + VT ++E L AD +L++ G
Sbjct: 179 LYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFY 238
Query: 823 GKYTDVINSGTDFMELVDAHKQALSTLDSIEGRPLSE 859
G ++++ + DF + + + L+E
Sbjct: 239 GTFSELQSLRPDFSSKLMGYDTFDQFTEERRSSILTE 275
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 188 bits (478), Expect = 7e-54
Identities = 59/276 (21%), Positives = 113/276 (40%), Gaps = 25/276 (9%)
Query: 1209 MENKIISVERIFQYTCIPSEPPLEIEESRPNHSWPSH-GKIDLRDLQVRYAPHMPFVLRG 1267
MEN E F E ++++S + S + L + P VL+
Sbjct: 5 MENVTAFWEEGF------GELLEKVQQSNGDRKHSSDENNVSFSHLCLVGNP----VLKN 54
Query: 1268 ISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSI 1327
I+ + I G TGSGK++L+ + +E + G I G R+S
Sbjct: 55 INLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------RVSF 101
Query: 1328 IPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSM 1387
Q + GT++ N+ Y + + + CQL ++ K + ++ + E G S
Sbjct: 102 CSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSG 161
Query: 1388 GQRQLVCLGRVLLKRRKILMLDEATASVDTAT-DNLIQQSLRQHFSDCTVITIAHRITSV 1446
GQR + L R + K + +LD +D T + + + + + ++ T I + ++ +
Sbjct: 162 GQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHL 221
Query: 1447 IDSDMVLLLSHGLIEEYDSPRKLLENKSSSFSQLVA 1482
+D +L+L G Y + +L + S+L+
Sbjct: 222 RKADKILILHQGSSYFYGTFSELQSLRPDFSSKLMG 257
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 217 bits (553), Expect = 2e-64
Identities = 80/238 (33%), Positives = 134/238 (56%), Gaps = 3/238 (1%)
Query: 1246 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQ 1305
G ++ R++ Y LR I+ P K +VGR+GSGKST+ + R + G
Sbjct: 12 GDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGH 71
Query: 1306 ILIDGIDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNV--DPLEEYTDEQIWEALDKCQL 1363
IL+DG D+ L LR +++++ Q+ +F TV +N+ EEY+ EQI EA
Sbjct: 72 ILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYA 131
Query: 1364 GDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLI 1423
D + K + LD+ + ENG S GQRQ + + R LL+ IL+LDEAT+++DT ++ I
Sbjct: 132 MDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAI 191
Query: 1424 QQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSFSQLV 1481
Q +L + + T + IAHR++++ +D ++++ G+I E + +LL + ++QL
Sbjct: 192 QAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLA-QHGVYAQLH 248
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 193 bits (491), Expect = 4e-56
Identities = 66/240 (27%), Positives = 118/240 (49%), Gaps = 17/240 (7%)
Query: 617 AIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGT 676
+E + F++ P L++INLK+ G VA+ G GSGKS++ S I G
Sbjct: 13 DLEFRNVTFTYP-GREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGH 71
Query: 677 LKLCGTK-------------AYVAQSPWIQSGKIEDNILFG--KEMDRERYNAVLDACSL 721
+ + G A V+Q+ + + + +NI + +E RE+
Sbjct: 72 ILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYA 131
Query: 722 EKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHL 781
+ + G T++GE G+ LSGGQ+QRI IARAL +D+ I + D+ SA+D + +
Sbjct: 132 MDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAI 191
Query: 782 FKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVINSGTDFMELVDA 841
L L ++T L + H++ + AD ++V++DG I + G +++++ + +L
Sbjct: 192 Q-AALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQLHKM 250
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 209 bits (534), Expect = 5e-62
Identities = 75/235 (31%), Positives = 131/235 (55%), Gaps = 1/235 (0%)
Query: 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1307
I R+++ RY P P +L I+ + + GIVGR+GSGKSTL + + R P GQ+L
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 1308 IDGIDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNV-DPLEEYTDEQIWEALDKCQLGDE 1366
IDG D++L + LR ++ ++ QD V+ ++ N+ + E++ A D
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 121
Query: 1367 VRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQS 1426
+ + ++ V E G S GQRQ + + R L+ KIL+ DEAT+++D ++++I ++
Sbjct: 122 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN 181
Query: 1427 LRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSFSQLV 1481
+ + TVI IAHR+++V ++D ++++ G I E ++LL S +S L
Sbjct: 182 MHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLY 236
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 165 bits (420), Expect = 1e-46
Identities = 63/239 (26%), Positives = 105/239 (43%), Gaps = 17/239 (7%)
Query: 618 IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTL 677
I + F + L +INL + G + + G GSGKS+L I +G +
Sbjct: 2 ITFRNIRFRYK-PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV 60
Query: 678 KLCGTK-------------AYVAQSPWIQSGKIEDNILFGKE-MDRERYNAVLDACSLEK 723
+ G V Q + + I DNI M E+
Sbjct: 61 LIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHD 120
Query: 724 DLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFK 783
+ L G T+VGE+G LSGGQ+QRI IARAL + I +FD+ SA+D + +
Sbjct: 121 FISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM- 179
Query: 784 EVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVI-NSGTDFMELVDA 841
+ + +TV+ + H++ + AD ++V++ GKI + GK+ +++ + + L
Sbjct: 180 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 238
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 199 bits (508), Expect = 2e-58
Identities = 67/245 (27%), Positives = 121/245 (49%), Gaps = 6/245 (2%)
Query: 1242 WPSHGKIDLRDLQVRYAPHM-PFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVE 1300
G + +D+ Y VL+G++ T + T +VG GSGKST+ L + +
Sbjct: 6 LHLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ 65
Query: 1301 PAAGQILIDGIDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNV--DPLEEYTDEQIWEAL 1358
P GQ+L+DG + L +++ + Q+P +F +++ N+ ++ T E+I A
Sbjct: 66 PTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAA 125
Query: 1359 DKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTA 1418
K + D++V E G S GQRQ V L R L+++ +L+LD+AT+++D
Sbjct: 126 VKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDAN 185
Query: 1419 TDNLIQQSLR--QHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSS 1476
+ ++Q L +V+ I ++ V +D +L L G I E + ++L+E K
Sbjct: 186 SQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKK-GC 244
Query: 1477 FSQLV 1481
+ +V
Sbjct: 245 YWAMV 249
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 180 bits (457), Expect = 2e-51
Identities = 58/241 (24%), Positives = 103/241 (42%), Gaps = 16/241 (6%)
Query: 617 AIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGT 676
++ D +F++ L+ + + G A+ G GSGKS++ + + G
Sbjct: 11 LVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQ 70
Query: 677 LKLCGTK-------------AYVAQSPWIQSGKIEDNILFGKEMD--RERYNAVLDACSL 721
L L G A V Q P + +++NI +G E A
Sbjct: 71 LLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGA 130
Query: 722 EKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHL 781
+ L G T V E G LSGGQ+Q + +ARAL + + + DD SA+DA++ +
Sbjct: 131 HSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQV 190
Query: 782 FKEVL-LGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVINSGTDFMELVD 840
+ + S++VL +T + + AD +L ++ G I + G + ++ + +V
Sbjct: 191 EQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGCYWAMVQ 250
Query: 841 A 841
A
Sbjct: 251 A 251
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 194 bits (494), Expect = 1e-56
Identities = 76/238 (31%), Positives = 125/238 (52%), Gaps = 4/238 (1%)
Query: 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1307
+ R + Y +LR IS G +G GKST+ L R +P AG+I
Sbjct: 2 LSARHVDFAY-DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT 60
Query: 1308 IDGIDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNVD--PLEEYTDEQIWEALDKCQLGD 1365
IDG I I L + R+++ + QD + GT+R N+ +YTDE +W+ LD
Sbjct: 61 IDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARS 120
Query: 1366 EVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQ 1425
V +L+++V E G S GQRQ + + R L+ KILMLDEATAS+D+ +++++Q+
Sbjct: 121 FVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQK 180
Query: 1426 SLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSFSQLVAE 1483
+L T + IAHR+++++D+D + + G I +L+ +++ V+E
Sbjct: 181 ALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKYVSE 237
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 170 bits (431), Expect = 4e-48
Identities = 62/237 (26%), Positives = 115/237 (48%), Gaps = 18/237 (7%)
Query: 618 IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTL 677
+ +F++D L+DI+ + +A G G GKS++ S + +G +
Sbjct: 2 LSARHVDFAYD--DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 678 KLCGTK-------------AYVAQSPWIQSGKIEDNILFGKE--MDRERYNAVLDACSLE 722
+ G +V+Q I +G I +N+ +G E E VLD
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 723 KDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLF 782
+E + T VGERG+ +SGGQ+QR+ IARA ++ I + D+ +++D+ + S +
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 783 KEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVINSGTDFMELV 839
K L L+ +T L + H++ + AD + I+ G+IT +GK+ +++ + + + V
Sbjct: 180 KA-LDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYV 235
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 125 bits (316), Expect = 1e-32
Identities = 65/257 (25%), Positives = 114/257 (44%), Gaps = 36/257 (14%)
Query: 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQI 1306
K+ + DL RY H VL+G+S I+G +GSGKST ++ + + +P+ G I
Sbjct: 2 KLHVIDLHKRYGGHE--VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI 59
Query: 1307 LIDGIDISLIGLHD-------------LRTRLSIIPQDPVMFEG-TVRSNVD--PLE--- 1347
+++G +I+L+ D LRTRL+++ Q ++ TV NV P++
Sbjct: 60 IVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG 119
Query: 1348 ---EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRK 1404
E+ + L K + + + K + S GQ+Q V + R L
Sbjct: 120 LSKHDARERALKYLAKVGIDERAQGKYPV----------HLSGGQQQRVSIARALAMEPD 169
Query: 1405 ILMLDEATASVD-TATDNLIQQSLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGLIEE 1462
+L+ DE T+++D +++ + T++ + H + S V+ L G IEE
Sbjct: 170 VLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEE 229
Query: 1463 YDSPRKLLENKSSSFSQ 1479
P ++ N S Q
Sbjct: 230 EGDPEQVFGNPQSPRLQ 246
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 105 bits (263), Expect = 1e-25
Identities = 57/250 (22%), Positives = 101/250 (40%), Gaps = 49/250 (19%)
Query: 618 IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTL 677
+ + D + + + LK ++L+ G +++ G+ GSGKS+ L CI G +
Sbjct: 3 LHVIDLHKRYG---GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI 59
Query: 678 KLCGTK--------------------------AYVAQSP-WIQSGKIEDNILFG------ 704
+ G V Q + +N++
Sbjct: 60 IVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG 119
Query: 705 --KEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDAD 762
K RER L +++ + G+ ++LSGGQ+QR+ IARAL + D
Sbjct: 120 LSKHDARERALKYLAKVGIDERAQ----------GKYPVHLSGGQQQRVSIARALAMEPD 169
Query: 763 IYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQ 821
+ LFD+P SA+D + + + KT++ VTH++ F + V+ + GKI +
Sbjct: 170 VLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEE 229
Query: 822 AGKYTDVINS 831
G V +
Sbjct: 230 EGDPEQVFGN 239
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 123 bits (310), Expect = 5e-32
Identities = 45/244 (18%), Positives = 104/244 (42%), Gaps = 26/244 (10%)
Query: 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQI 1306
++ L +L R+ + ++ T + ++G +G GK+T ++ + + EP G+I
Sbjct: 6 EVKLENLTKRFGNFT--AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI 63
Query: 1307 LIDGIDISLIGLHDLRTRLSIIPQDPVMFEG-TVRSNVDPLEEYT-------DEQIWEAL 1358
D++ L +S++ Q ++ TV N+ + D+++ A
Sbjct: 64 YFGDRDVT--YLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAA 121
Query: 1359 DKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTA 1418
+ Q+ + + + +L S GQRQ V + R ++ +L++DE +++D
Sbjct: 122 ELLQIEELLNRYPAQL-----------SGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAK 170
Query: 1419 TDNLIQQSLR--QHFSDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLENKSS 1475
++ ++ Q T I + H + D + +++ G + + SP ++ +S
Sbjct: 171 LRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNS 230
Query: 1476 SFSQ 1479
F
Sbjct: 231 VFVA 234
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 117 bits (294), Expect = 8e-30
Identities = 52/216 (24%), Positives = 85/216 (39%), Gaps = 32/216 (14%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK-----------A 684
+ +NL + G + + G G GK++ L I G G + +
Sbjct: 22 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNIS 81
Query: 685 YVAQSPWIQSG-KIEDNILFG-------KEMDRERYNAVLDACSLEKDLEILSFGDQTVV 736
V QS + + +NI F K+ +R + +E+ L
Sbjct: 82 MVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLN---------- 131
Query: 737 GERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVL-LGLLNSKTV 795
LSGGQ+QR+ +ARA+ + D+ L D+P S +DA + E+ L T
Sbjct: 132 -RYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTT 190
Query: 796 LYVTHQVEFLPA-ADLVLVIKDGKITQAGKYTDVIN 830
+YVTH D + V+ G++ Q G T+V
Sbjct: 191 IYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYL 226
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 122 bits (308), Expect = 7e-32
Identities = 48/229 (20%), Positives = 95/229 (41%), Gaps = 9/229 (3%)
Query: 1248 IDLRDLQVRYAP--HMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQ 1305
I L+++ Y + + L+ ++ + I+G +GSGKST++ + + +P G+
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 1306 ILIDGIDISLIGLHDL----RTRLSIIPQDPVMFEG-TVRSNVDPLEEYTDEQIWEALDK 1360
+ ID I + + +L R ++ + Q + T NV+ + ++
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 1361 CQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATD 1420
+ E K + S GQ+Q V + R L I++ D+ T ++D+ T
Sbjct: 122 RKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTG 181
Query: 1421 NLIQQSLR--QHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPR 1467
I Q L+ TV+ + H I + ++ L G +E + R
Sbjct: 182 EKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLR 230
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 116 bits (291), Expect = 1e-29
Identities = 56/235 (23%), Positives = 98/235 (41%), Gaps = 36/235 (15%)
Query: 618 IEIADGNFSWDISSHNPT-LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGT 676
I++ + ++ + LK++NL + G V++ G GSGKS++L+ I G
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 677 LKLCGTK-----------------AYVAQSPW-IQSGKIEDNILFGKEM-------DRER 711
+ + K +V Q I +N+ ER
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 712 YNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFS 771
L+ ++ ++ + LSGGQ+QR+ IARAL + I L D P
Sbjct: 122 RKRALECL------KMAELEER-FANHKPNQLSGGQQQRVAIARALANNPPIILADQPTG 174
Query: 772 AVDAHTGSHLFKEVLLGLLNS--KTVLYVTHQVEFLPAADLVLVIKDGKITQAGK 824
A+D+ TG + ++L L KTV+ VTH + + ++ +KDG++ + K
Sbjct: 175 ALDSKTGEKIM-QLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEK 228
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 123 bits (309), Expect = 7e-32
Identities = 64/248 (25%), Positives = 113/248 (45%), Gaps = 27/248 (10%)
Query: 1248 IDLRDLQVRYAPHMPFV--LRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQ 1305
I L ++ + + L +S P + G++G +G+GKSTLI+ + + P G
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 1306 ILIDGIDISLIGLHD---LRTRLSIIPQDPVMF-EGTVRSNVD-PLEEY------TDEQI 1354
+L+DG +++ + + R ++ +I Q + TV NV PLE ++
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 121
Query: 1355 WEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATAS 1414
E L LGD+ L S GQ+Q V + R L K+L+ DEAT++
Sbjct: 122 TELLSLVGLGDKHDSYPSNL-----------SGGQKQRVAIARALASNPKVLLCDEATSA 170
Query: 1415 VDTATDNLIQQSLR--QHFSDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLE 1471
+D AT I + L+ T++ I H + V D V ++S+G + E D+ ++
Sbjct: 171 LDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230
Query: 1472 NKSSSFSQ 1479
+ + +Q
Sbjct: 231 HPKTPLAQ 238
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 100 bits (251), Expect = 3e-24
Identities = 51/222 (22%), Positives = 91/222 (40%), Gaps = 37/222 (16%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK------------ 683
L +++L V G V G G+GKS+L+ C+ G++ + G +
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 80
Query: 684 ----AYVAQSP-WIQSGKIEDNILFG-------KEMDRERYNAVLDACSLEKDLEILSFG 731
+ Q + S + N+ K+ + R +L L +
Sbjct: 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHD----- 135
Query: 732 DQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVL-LGLL 790
NLSGGQKQR+ IARAL + + L D+ SA+D T + + + +
Sbjct: 136 ------SYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRR 189
Query: 791 NSKTVLYVTHQVEF-LPAADLVLVIKDGKITQAGKYTDVINS 831
T+L +TH+++ D V VI +G++ + ++V +
Sbjct: 190 LGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSH 231
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 112 bits (281), Expect = 3e-28
Identities = 43/236 (18%), Positives = 82/236 (34%), Gaps = 28/236 (11%)
Query: 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1307
+ L+D+ L +S + +VG G+GKSTL+ + + G I
Sbjct: 4 MQLQDVAESTR------LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM-TSGKGSIQ 56
Query: 1308 IDGIDISLIGLHDLRTRLSIIPQDPVM-FEGTVRSNV-DPLEEYTDEQIWEALDKCQLGD 1365
G + L + + Q F V + + T ++ +
Sbjct: 57 FAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGAL--- 113
Query: 1366 EVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLK-------RRKILMLDEATASVDTA 1418
LD K+ + S G+ Q V L V+L+ ++L+LDE S+D A
Sbjct: 114 -------ALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVA 166
Query: 1419 TDNLIQQSLRQ-HFSDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLEN 1472
+ + + L ++ +H + + + LL G + ++L
Sbjct: 167 QQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTP 222
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 100 bits (251), Expect = 3e-24
Identities = 45/225 (20%), Positives = 89/225 (39%), Gaps = 36/225 (16%)
Query: 631 SHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------- 682
+ + L ++ +V G + + G G+GKS+LL+ + G G+++ G
Sbjct: 10 AESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG-KGSIQFAGQPLEAWSAT 68
Query: 683 -----KAYVAQSPWIQSG-KIEDNILFG--KEMDRERYNAVLDACSLEKDLEILSFGDQT 734
+AY++Q + + + E N V A +L+ L
Sbjct: 69 KLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKL--------- 119
Query: 735 VVGERGINLSGGQKQRIQIARALYQ-------DADIYLFDDPFSAVDAHTGSHLFKEVLL 787
G LSGG+ QR+++A + Q + L D+P +++D S L K +
Sbjct: 120 --GRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSA 177
Query: 788 GLLNSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYTDVINS 831
++ +H + A ++K GK+ +G+ +V+
Sbjct: 178 LCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTP 222
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 110 bits (276), Expect = 7e-28
Identities = 42/202 (20%), Positives = 90/202 (44%), Gaps = 26/202 (12%)
Query: 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQI 1306
K+++RDL V Y VL I+ T G G GK+TL++T+ ++P G+I
Sbjct: 2 KLEIRDLSVGYDKP---VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 58
Query: 1307 LIDGIDISLIGLHDLRTRLSIIPQDPVMFEG-TVRSNVDPLEEY-----TDEQIWEALDK 1360
+ +G+ I ++ ++ +P++ ++ +V + + +I +AL+
Sbjct: 59 IYNGVPI-----TKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALES 113
Query: 1361 CQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATD 1420
++ D +K S G + V L LL +I +LD+ ++D +
Sbjct: 114 VEVLDLKKK------------LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSK 161
Query: 1421 NLIQQSLRQHFSDCTVITIAHR 1442
+ + +S+ + + ++ I+ R
Sbjct: 162 HKVLKSILEILKEKGIVIISSR 183
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 100 bits (250), Expect = 2e-24
Identities = 43/208 (20%), Positives = 86/208 (41%), Gaps = 26/208 (12%)
Query: 618 IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTL 677
+EI D + +D P L+ I + + G V G G GK++LL I + + G +
Sbjct: 3 LEIRDLSVGYD----KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 58
Query: 678 KLCGTK--------AYVAQSP-WIQSGKIEDNILFGKEMDRERYNAVLDACSLEKDLEIL 728
G ++ + + +ED + + + ++ + LE +
Sbjct: 59 IYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVK----VNKNEIMDALESV 114
Query: 729 SFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLG 788
D ++ LS G +R+Q+A L +A+IY+ DDP A+D + + K +L
Sbjct: 115 EVLDL---KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKS-ILE 170
Query: 789 LLNSK--TVLYVTHQVEFLPAADLVLVI 814
+L K ++ ++ + D+ +
Sbjct: 171 ILKEKGIVIISSREELSY---CDVNENL 195
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 110 bits (277), Expect = 2e-27
Identities = 50/231 (21%), Positives = 95/231 (41%), Gaps = 25/231 (10%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK------------ 683
L +++ V G + G GSGKS+L++ I G + G +
Sbjct: 20 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 79
Query: 684 --AYVAQSP-WIQSGKIEDNILFGKEMDRERYNAVL--------DACSLEKDLEILSF-G 731
Q+P ++ + +N+L G+ E L + +EK +IL F
Sbjct: 80 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK 139
Query: 732 DQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLN 791
+ + LSGGQ + ++I RAL + + + D+P + V +F VL
Sbjct: 140 LSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK 199
Query: 792 SKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYTDVINSGTDFMELVDA 841
T L + H+++ + D + V+ +G+I G+ + I + ++V+
Sbjct: 200 GITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKNVLSDPKVVEI 250
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 105 bits (262), Expect = 2e-25
Identities = 51/238 (21%), Positives = 95/238 (39%), Gaps = 15/238 (6%)
Query: 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1307
+ ++ + L G+S + T I+G GSGKSTLI + ++ G++
Sbjct: 5 LRTENIVKYFGEFK--ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVY 62
Query: 1308 IDGIDISLIGLHDL-RTRLSIIPQDPVMFEG-TVRSNVDPLEEYTDEQIWEALDKCQLGD 1365
+ DI+ +L + Q P + TV N+ E E +L +
Sbjct: 63 FENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIP 122
Query: 1366 EVRK---------KEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVD 1416
+ + + KL S GQ +LV +GR L+ K++++DE A V
Sbjct: 123 KEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVA 182
Query: 1417 TATDNLIQQSLRQ-HFSDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLEN 1472
+ I + + T + I HR+ V++ D + ++ +G I + ++N
Sbjct: 183 PGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKN 240
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 106 bits (267), Expect = 3e-26
Identities = 48/235 (20%), Positives = 90/235 (38%), Gaps = 23/235 (9%)
Query: 613 SSETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPK 672
S+ +E+ + + +K I+LKV G V + G G+GK++ LS I G V
Sbjct: 2 VSDIVLEVQSLHVYYG---AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRA 58
Query: 673 ISGTLKLC---------------GTKAYVAQSPWIQSGKIEDNILFGKEMDRERYNAVLD 717
G + G + +N++ G +++ D
Sbjct: 59 QKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRD 118
Query: 718 ACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHT 777
+ L + + G LSGG++Q + I RAL + + D+P +
Sbjct: 119 LEWIFSLFPRLK----ERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPIL 174
Query: 778 GSHLFKEVLLGLLNSKTVLYVTHQVEF-LPAADLVLVIKDGKITQAGKYTDVINS 831
S +F+ + T+L V L A V++ G+I GK ++++++
Sbjct: 175 VSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 101 bits (252), Expect = 3e-24
Identities = 47/231 (20%), Positives = 101/231 (43%), Gaps = 14/231 (6%)
Query: 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1307
++++ L V Y ++GI P + ++G G+GK+T + + +V G+I+
Sbjct: 7 LEVQSLHVYYGAIH--AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKII 64
Query: 1308 IDGIDISLIGLHDLRTR-LSIIPQDPVMFEG-TVRSNVDPLEEY--TDEQIWEALDKCQL 1363
+G DI+ H + ++++P+ +F TV N+ E I L
Sbjct: 65 FNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDL----- 119
Query: 1364 GDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVD-TATDNL 1422
+ + +L ++ + G S G++Q++ +GR L+ R K+LM+DE + + +
Sbjct: 120 -EWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEV 178
Query: 1423 IQQSLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLEN 1472
+ + + T++ + + + +L G I +LL+N
Sbjct: 179 FEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 106 bits (267), Expect = 3e-26
Identities = 44/242 (18%), Positives = 109/242 (45%), Gaps = 24/242 (9%)
Query: 1246 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQ 1305
G + ++DL+ R +L+GIS + G++G G+GK+T ++ + +++P++G
Sbjct: 1 GAVVVKDLRKRIGKKE--ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGI 58
Query: 1306 ILIDGIDISLIGLHDLRTRLSIIPQDPVMFEG-TVRSNVDPLEEYT-------DEQIWEA 1357
+ + G ++ H++R +S +P++ + + + + +E + A
Sbjct: 59 VTVFGKNVV-EEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERA 117
Query: 1358 LDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDT 1417
+ LG++++ + S G + + + R L+ ++ +LDE T+ +D
Sbjct: 118 TEIAGLGEKIKDRVSTY-----------SKGMVRKLLIARALMVNPRLAILDEPTSGLDV 166
Query: 1418 ATDNLIQQSLRQHFSDCTVITIAHRITSVID--SDMVLLLSHGLIEEYDSPRKLLENKSS 1475
+++ L+Q + I ++ ++ D + L+ +G I E + +L E +
Sbjct: 167 LNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKA 226
Query: 1476 SF 1477
Sbjct: 227 QN 228
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 98.5 bits (245), Expect = 2e-23
Identities = 43/236 (18%), Positives = 91/236 (38%), Gaps = 22/236 (9%)
Query: 617 AIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGT 676
A+ + D LK I+ ++ G + G G+GK++ L I + SG
Sbjct: 2 AVVVKDLRKRIG---KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGI 58
Query: 677 LKLCGTK------------AYVAQSPWIQSG-KIEDNILFGKEMDRERYNAVLDACSLEK 723
+ + G +Y+ + + + + F + + + +E+
Sbjct: 59 VTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEM--VER 116
Query: 724 DLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFK 783
EI G++ + +R S G +++ IARAL + + + D+P S +D + K
Sbjct: 117 ATEIAGLGEK--IKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRK 174
Query: 784 EVLLGLLNSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYTDVINS-GTDFME 837
+ T+L +H + + D + +I +G I + G ++ +E
Sbjct: 175 ILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQNIE 230
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 105 bits (262), Expect = 1e-25
Identities = 63/234 (26%), Positives = 101/234 (43%), Gaps = 35/234 (14%)
Query: 618 IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTL 677
+++ + +W KDINL + G V G G GKS+LL I G SG L
Sbjct: 1 VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL 57
Query: 678 KLCGTK-----------AYVAQSPWIQSGK-IEDNILFG-------KEMDRERYNAVLDA 718
+ + V QS + + +N+ FG KE+ +R N V +
Sbjct: 58 FIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEV 117
Query: 719 CSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTG 778
L L+ + LSGGQ+QR+ I R L + ++L D+P S +DA
Sbjct: 118 LQLAHLLD-----------RKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALR 166
Query: 779 SHLFKEVL-LGLLNSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYTDVIN 830
+ E+ L +T++YVTH AD ++V+ G++ Q GK ++ +
Sbjct: 167 VQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYH 220
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 103 bits (259), Expect = 2e-25
Identities = 44/243 (18%), Positives = 99/243 (40%), Gaps = 26/243 (10%)
Query: 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1307
+ L+++ + + V + I+ + VG +G GKSTL++ + + +G +
Sbjct: 1 VQLQNVTKAWGEVV--VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF 58
Query: 1308 IDGIDISLIGLHDLRTRLSIIPQDPVMFEG-TVRSNVD-------PLEEYTDEQIWEALD 1359
I ++ + ++ Q ++ +V N+ +E ++++ + +
Sbjct: 59 IGEKRMN--DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAE 116
Query: 1360 KCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTAT 1419
QL + +K L S GQRQ V +GR L+ + +LDE +++D A
Sbjct: 117 VLQLAHLLDRKPKAL-----------SGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAAL 165
Query: 1420 DNLIQQSLR--QHFSDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLENKSSS 1476
++ + T+I + H + +D +++L G + + P +L +
Sbjct: 166 RVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADR 225
Query: 1477 FSQ 1479
F
Sbjct: 226 FVA 228
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 103 bits (259), Expect = 3e-25
Identities = 45/211 (21%), Positives = 84/211 (39%), Gaps = 16/211 (7%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------KAYVAQ 688
+++++L+V G + + G G GK++ L I G G + + +V
Sbjct: 19 VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP 78
Query: 689 SPWIQSGKIEDNILFGKEMDRE------RYNAVLDACSLEKDLEILSFGDQTVVGERGIN 742
+ + L+ + + V ++ E+ T + R
Sbjct: 79 KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPR 138
Query: 743 -LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVL-LGLLNSKTVLYVTH 800
LSGGQ+QR+ + RA+ + ++L D+P S +DA + E+ L T +YVTH
Sbjct: 139 ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTH 198
Query: 801 QVEFLPA-ADLVLVIKDGKITQAGKYTDVIN 830
D + V+ G + Q G +V +
Sbjct: 199 DQVEAMTMGDRIAVMNRGVLQQVGSPDEVYD 229
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 103 bits (257), Expect = 5e-25
Identities = 44/246 (17%), Positives = 107/246 (43%), Gaps = 28/246 (11%)
Query: 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQI 1306
+ L D+ + +R +S + ++G +G GK+T ++ + + EP+ GQI
Sbjct: 3 GVRLVDVWKVFGEVT--AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI 60
Query: 1307 LIDGIDISLIGLHDLR----TRLSIIPQDPVMFEGTVRS-NVDPLEEYT-------DEQI 1354
I ++ ++++ Q ++ N+ + D+++
Sbjct: 61 YIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRV 120
Query: 1355 WEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATAS 1414
E + L + + +K +L S GQRQ V LGR ++++ ++ ++DE ++
Sbjct: 121 REVAELLGLTELLNRKPREL-----------SGGQRQRVALGRAIVRKPQVFLMDEPLSN 169
Query: 1415 VDTATDNLIQQSLR--QHFSDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLE 1471
+D ++ L+ Q T I + H + D + +++ G++++ SP ++ +
Sbjct: 170 LDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYD 229
Query: 1472 NKSSSF 1477
+++F
Sbjct: 230 KPANTF 235
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 98.6 bits (245), Expect = 2e-23
Identities = 43/239 (17%), Positives = 100/239 (41%), Gaps = 13/239 (5%)
Query: 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQI 1306
+I ++++ + L ++ ++ GI+G +G+GK+T ++ + + P+ G++
Sbjct: 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL 62
Query: 1307 LIDGIDISLIGLHDLRTR---LSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQL 1363
D ++ G + + ++ Q ++ N+ E + K ++
Sbjct: 63 YFDDRLVASNGKLIVPPEDRKIGMVFQTWALYP-----NLTAFENIAFPLTNMKMSKEEI 117
Query: 1364 GDEVRK--KEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDN 1421
V + K + + S Q+Q V L R L+K +L+LDE +++D +
Sbjct: 118 RKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRD 177
Query: 1422 LIQQSLR--QHFSDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLENKSSSF 1477
+ ++ Q T++ ++H + +D V +L G + + P L +N S
Sbjct: 178 SARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQ 236
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 91.3 bits (226), Expect = 6e-21
Identities = 56/221 (25%), Positives = 88/221 (39%), Gaps = 37/221 (16%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK------------ 683
L ++N+ + +G R + G G+GK++ + I G +G L
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80
Query: 684 ----AYVAQS----PWIQSGKIEDNIL----FGKEMDRERYNAVLDACSLEKDLEILSFG 731
V Q+ P + + + L KE R+R V + L
Sbjct: 81 DRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNH---- 136
Query: 732 DQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVL-LGLL 790
LSG Q+QR+ +ARAL +D + L D+PFS +DA V +
Sbjct: 137 -------FPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSR 189
Query: 791 NSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYTDVIN 830
T+L V+H + A AD V V+ GK+ Q GK D+ +
Sbjct: 190 LGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD 230
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 97.1 bits (241), Expect = 5e-23
Identities = 64/231 (27%), Positives = 98/231 (42%), Gaps = 33/231 (14%)
Query: 618 IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTL 677
IEI + W N +L +++LKV G + G G+GK+ L I G SG +
Sbjct: 2 IEIESLSRKWK----NFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 678 KLCGT-----------KAYVAQSP-----WIQSGKIEDNILFGKEMDRERYNAVLDACSL 721
L G A+V Q+ +E + K D +R +
Sbjct: 58 LLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKI 117
Query: 722 EKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHL 781
E L+ + LSGG++QR+ +ARAL + I L D+P SA+D T +
Sbjct: 118 EHLLD-----------RNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENA 166
Query: 782 FKEVL-LGLLNSKTVLYVTHQVEF-LPAADLVLVIKDGKITQAGKYTDVIN 830
+ + L N TVL++TH AD + V+ DGK+ Q GK ++
Sbjct: 167 REMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFE 217
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 97.1 bits (241), Expect = 6e-23
Identities = 51/245 (20%), Positives = 106/245 (43%), Gaps = 27/245 (11%)
Query: 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1307
I++ L ++ F L +S + I+G TG+GK+ ++ + P +G+IL
Sbjct: 2 IEIESLSRKWKN---FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRIL 58
Query: 1308 IDGIDISLIGLHDLRTRLSIIPQDPVMFEG-TVRSNVDP----LEEYTDEQIWEALDKCQ 1362
+DG D++ L + ++ + Q+ +F V+ N++ + +++ + +
Sbjct: 59 LDGKDVT--DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLK 116
Query: 1363 LGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNL 1422
+ + + L S G++Q V L R L+ KIL+LDE +++D T
Sbjct: 117 IEHLLDRNPLTL-----------SGGEQQRVALARALVTNPKILLLDEPLSALDPRTQEN 165
Query: 1423 IQQSLR--QHFSDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLENKSSSFSQ 1479
++ L + TV+ I H T +D + ++ G + + P ++ E
Sbjct: 166 AREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGR-- 223
Query: 1480 LVAEY 1484
VA +
Sbjct: 224 -VASF 227
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 95.5 bits (237), Expect = 3e-22
Identities = 51/219 (23%), Positives = 99/219 (45%), Gaps = 11/219 (5%)
Query: 1268 ISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSI 1327
+ + ++G TG+GKS ++ + IV+P G++ ++G DI+ L R +
Sbjct: 18 VDFEMGRDY-CVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADIT--PLPPERRGIGF 74
Query: 1328 IPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSM 1387
+PQD +F + + + E + + E LD K S
Sbjct: 75 VPQDYALFPHLSVYR-NIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPAR----LSG 129
Query: 1388 GQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLR--QHFSDCTVITIAHRITS 1445
G+RQ V L R L+ + ++L+LDE ++VD T ++ + LR Q D ++ + H +
Sbjct: 130 GERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIE 189
Query: 1446 VID-SDMVLLLSHGLIEEYDSPRKLLENKSSSFSQLVAE 1483
+D V ++ +G I E ++L K+ ++ ++
Sbjct: 190 AAMLADEVAVMLNGRIVEKGKLKELFSAKNGEVAEFLSA 228
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 87.8 bits (217), Expect = 1e-19
Identities = 53/214 (24%), Positives = 89/214 (41%), Gaps = 25/214 (11%)
Query: 638 DINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK-----------AYV 686
+++ ++ + G G+GKS L I G V G ++L G +V
Sbjct: 17 NVDFEM-GRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFV 75
Query: 687 AQSP-WIQSGKIEDNILFGKEM--DRERYNAVLDACSLEKDLEILSFGDQTVVGERGINL 743
Q + NI +G ER V + G ++ + L
Sbjct: 76 PQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEK--------LGIAHLLDRKPARL 127
Query: 744 SGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVL-LGLLNSKTVLYVTHQV 802
SGG++QR+ +ARAL + L D+P SAVD T L +E+ + +L+VTH +
Sbjct: 128 SGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDL 187
Query: 803 EFLPA-ADLVLVIKDGKITQAGKYTDVINSGTDF 835
AD V V+ +G+I + GK ++ ++
Sbjct: 188 IEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGE 221
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 77.0 bits (188), Expect = 2e-16
Identities = 16/178 (8%), Positives = 42/178 (23%), Gaps = 16/178 (8%)
Query: 647 MRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKE 706
M++ + G G GK++L+ I+ + K + + D +
Sbjct: 1 MKIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEE---------------VRDPETKKRT 45
Query: 707 MDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLF 766
R K V + A + +
Sbjct: 46 GFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIII 105
Query: 767 DDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGK 824
D+ ++ + + + V+ + P + + + +
Sbjct: 106 DEI-GKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTP 162
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 67.3 bits (163), Expect = 3e-13
Identities = 21/186 (11%), Positives = 44/186 (23%), Gaps = 28/186 (15%)
Query: 1277 KTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSIIPQDPVMFE 1336
K I G G GK+TL++ + + A + + ++ + +
Sbjct: 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSS 61
Query: 1337 GTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLG 1396
S + Q +E
Sbjct: 62 KFFTSKKLVGSYGVNVQYFE----------------------------ELAIPILERAYR 93
Query: 1397 RVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLS 1456
RRK++++DE + H + V+ + L
Sbjct: 94 EAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLP 153
Query: 1457 HGLIEE 1462
++ E
Sbjct: 154 GAVLIE 159
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.2 bits (134), Expect = 3e-09
Identities = 19/173 (10%), Positives = 46/173 (26%), Gaps = 7/173 (4%)
Query: 1276 KKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSIIPQDPVMF 1335
+ + G G GK+TLI +++ + + + G + + +
Sbjct: 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPL 61
Query: 1336 EGTVRSNVDPL------EEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQ 1389
+ D +E L L + V + +
Sbjct: 62 SRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFS 121
Query: 1390 RQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHR 1442
+ + R L ++L L+++ + +T +R
Sbjct: 122 QLFIQAVRQTLSTPGTIILGTIPVPKGKPLA-LVEEIRNRKDVKVFNVTKENR 173
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 323 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 49.5 bits (116), Expect = 2e-06
Identities = 42/315 (13%), Positives = 91/315 (28%), Gaps = 17/315 (5%)
Query: 916 YWKYITAAYGGVLVPFILLAQTLFQILQIASNYWIAWAT-------PASKDIKPRVTGSM 968
Y I A ++ + + + I +A + D K
Sbjct: 12 YKYRIFAT---------IIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIA 62
Query: 969 LLIVFVALAFGSSFCILARSTLLATAGYKTATLLFNKMHYCIFRAPMSFFDATPSGRIIN 1028
+ I R L K + K++ + F+ G++I+
Sbjct: 63 IGIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVIS 122
Query: 1029 RASTDQSAVDLSIPALIGSFAFSIIRVLGVIGVMSLVAWQVFIVFIPVIATCIWYQQYYI 1088
R D I + + I ++ + +M + ++ + + + I +
Sbjct: 123 RVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFF 182
Query: 1089 SSARELSRLVGVCKAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGYSRPTFHVAA 1148
R+L+R A + E V G + ++SF E + +
Sbjct: 183 GRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTR 242
Query: 1149 AMEWLGFRLDMLSNITFAFSLVF-LISIPKGFIDPAIAGLAVTYGLTLNNLQAMLIWLAC 1207
+ ++ +++I + G I V Y L L+
Sbjct: 243 WNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFT 302
Query: 1208 QMENKIISVERIFQY 1222
+ S++R+FQ
Sbjct: 303 TLTQSFASMDRVFQL 317
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 319 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 49.5 bits (116), Expect = 2e-06
Identities = 28/315 (8%), Positives = 91/315 (28%), Gaps = 4/315 (1%)
Query: 288 TLKLIKAMFRSVWKDVLLTALVAIVCTLATYVGPYLIDTLVQYLSGKRDFENEGYALVSA 347
T + + +++ + I+ + L+ L+ GK D + +
Sbjct: 3 TFRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVV 62
Query: 348 FCVAKLVECLCQRFFVFRLEQLGIRLRAALIAMIYNKGLKLSSQAKQGNTSGEIINFMTV 407
+ L G + + + + + +T +
Sbjct: 63 IGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYD 122
Query: 408 DAERVAELSWYIHDPWLFLFEVALSFLILYKSLGIASVAAFFGTVIFMLVNVPLSTVQEK 467
+ + S + + F++++ S+ I + +S
Sbjct: 123 SEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRS 182
Query: 468 FQNELMKSKDERMKATSEILRNMRILKLQGWELKFLSKTIDLRKSESGWLKRCLYTSSIT 527
+ + + + ++L+ + + + G + + + + + SSI+
Sbjct: 183 ISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSIS 242
Query: 528 SFVFWCAPTFVS--VITFGTCILLKVPLESGKVLSAIATFRLLQILIYKLPAIISMTIQT 585
+ + V+ + + L +G + ++ L + L + + +
Sbjct: 243 DPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRG 302
Query: 586 KVSLQRIASFFCLDE 600
+ Q + + LD
Sbjct: 303 MAACQTLFAI--LDS 315
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 319 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 42.6 bits (98), Expect = 3e-04
Identities = 39/313 (12%), Positives = 99/313 (31%), Gaps = 3/313 (0%)
Query: 917 WKYITAAYGGVLVPFILLAQTLFQILQIASNYWIAWATPASKDIKPRVTGSMLLIVFVAL 976
W I G++V I L L + R + +V + L
Sbjct: 8 WPTIAPFKAGLIVAGIALI--LNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGL 65
Query: 977 AFGSSFCILARSTLLATAGYKTATLLFNKMHYCIFRAPMSFFDATPSGRIINRASTDQSA 1036
S ++ K + ++ + P++FFD +G +++R + D
Sbjct: 66 MILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQ 125
Query: 1037 VDLSIPALIGSFAFSIIRVLGVIGVMSLVAWQVFIVFIPVIATCIWYQQYYISSARELSR 1096
V S + + ++G+ +M +WQ+ I+ + + + R +S+
Sbjct: 126 VASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISK 185
Query: 1097 LVGVCKAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGYSRPTFHVAAAMEWLGFR 1156
+ + + + G + F + ++ + + +A
Sbjct: 186 NMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPI 245
Query: 1157 LDMLSNITFAFSLVF-LISIPKGFIDPAIAGLAVTYGLTLNNLQAMLIWLACQMENKIIS 1215
+ +++++ AF L + + + + L L + Q + + +
Sbjct: 246 IQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAA 305
Query: 1216 VERIFQYTCIPSE 1228
+ +F E
Sbjct: 306 CQTLFAILDSEQE 318
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1495 | |||
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 99.97 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 99.96 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 99.93 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.92 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 99.92 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.89 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.63 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.55 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.41 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.25 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.19 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.13 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 99.1 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.94 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.88 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.52 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.47 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.39 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 97.05 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.6 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.47 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.39 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 96.34 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 96.24 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 95.94 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.45 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.25 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 95.17 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 94.81 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 94.8 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 94.77 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 94.76 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 94.67 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 94.64 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 94.56 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 94.47 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 94.29 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 94.29 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 94.26 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 94.2 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 94.09 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 94.02 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 93.75 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 93.69 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 93.59 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 93.46 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 93.44 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 93.41 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 93.36 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 93.19 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 93.18 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 93.08 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 93.02 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 93.01 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 92.99 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 92.94 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 92.9 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 92.82 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 92.73 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 92.62 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 92.53 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 92.53 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 92.43 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 92.4 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 92.37 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 92.37 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 92.35 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 92.27 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 92.21 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 92.18 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 92.16 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 91.9 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 91.88 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 91.77 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 91.74 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 91.71 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 91.71 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 91.7 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 91.6 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 91.46 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 91.23 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 91.16 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 91.06 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 91.05 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 90.88 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 90.79 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 90.77 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 90.68 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 90.52 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 90.47 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 90.4 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 90.39 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 90.36 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 90.18 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 90.13 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 90.01 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 89.87 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 89.8 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 89.77 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 89.76 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 89.75 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 89.67 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 89.66 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 89.66 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 89.64 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 89.56 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 89.42 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 89.3 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 89.28 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 89.2 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 89.09 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 89.0 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 88.96 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 88.93 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 88.82 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 88.76 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 88.75 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 88.71 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 88.63 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 88.47 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 88.47 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 88.44 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 88.37 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 88.35 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 88.28 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 88.21 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 88.21 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 88.15 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 87.95 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 87.87 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 87.85 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 87.76 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 87.74 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 87.7 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 87.69 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 87.62 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 87.61 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 87.59 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 87.57 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 87.49 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 87.48 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 87.38 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 87.38 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 87.34 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 87.17 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 87.12 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 87.05 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 86.9 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 86.84 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 86.83 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 86.71 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 86.52 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 86.47 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 86.35 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 86.24 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 86.24 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 86.22 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 86.22 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 86.09 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 86.03 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 86.01 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 86.0 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 85.82 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 85.8 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 85.74 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 85.68 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 85.58 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 85.49 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 85.41 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 85.34 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 85.34 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 85.28 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 85.24 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 85.23 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 85.21 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 85.12 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 85.12 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 85.08 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 85.01 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 84.85 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 84.83 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 84.81 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 84.71 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 84.6 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 84.55 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 84.54 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 84.54 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 84.27 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 84.21 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 84.08 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 84.07 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 84.02 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 84.01 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 83.85 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 83.62 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 83.5 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 83.49 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 83.48 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 83.29 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 83.28 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 83.26 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 83.22 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 83.21 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 82.96 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 82.87 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 82.77 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 82.76 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 82.73 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 82.72 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 82.65 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 82.6 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 82.46 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 82.36 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 82.3 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 82.27 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 82.2 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 82.12 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 82.1 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 82.06 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 82.03 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 81.97 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 81.9 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 81.9 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 81.88 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 81.87 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 81.76 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 81.74 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 81.67 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 81.42 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 81.37 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 81.34 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 81.33 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 81.31 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 81.29 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 81.26 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 81.24 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 81.14 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 81.12 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 81.1 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 81.06 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 80.93 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 80.84 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 80.8 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 80.75 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 80.69 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 80.59 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 80.56 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 80.35 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 80.32 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 80.28 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 80.11 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 80.08 |
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=498.01 Aligned_cols=237 Identities=32% Similarity=0.507 Sum_probs=230.5
Q ss_pred EEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCE
Q ss_conf 18974106785899994100016885089399999699989889999983356698637999697389999777722438
Q 000452 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLS 1326 (1495)
Q Consensus 1247 ~I~~~nv~~~Y~~~~~~vL~~is~~i~~GekigIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1326 (1495)
+|+|+||+|+|+++.+++|+||||+|++||++||||+||||||||+++|.|+++|++|+|.|||.|+++++.+++|++++
T Consensus 1 eI~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 80 (241)
T d2pmka1 1 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVG 80 (241)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred CEEEEEEEEEECCCCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEEECCCCHHHHHCEEE
T ss_conf 92999999990899960374248998499999999999998999999997357888889999999944002465535288
Q ss_pred EECCCCCCCCCCHHHHCCCCC-CCCHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCE
Q ss_conf 981567678775777049998-9999999999998399678971008865212269998890399999999987259986
Q 000452 1327 IIPQDPVMFEGTVRSNVDPLE-EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKI 1405 (1495)
Q Consensus 1327 iIpQdp~LF~GTIR~NLdp~~-~~sD~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nlS~GQrQll~LARALLk~~~I 1405 (1495)
+|||||.+|+||||+||.... .+++++++++++.+++.+++..+|.|+++.++++|.+||||||||+||||||+++|+|
T Consensus 81 ~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~i 160 (241)
T d2pmka1 81 VVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKI 160 (241)
T ss_dssp EECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCSE
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCH
T ss_conf 98244655784000352235755438889999999755788876320134432787886698898987544344416513
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHCCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHHH
Q ss_conf 998758889999989999999998569927998705902230139899993848998549247861299768999999
Q 000452 1406 LMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSFSQLVAE 1483 (1495)
Q Consensus 1406 LiLDEaTsslD~~Te~~Iq~~Ir~~f~~~TvI~IAHRl~ti~~~DrIlVLd~G~IvE~g~p~~Ll~~~~s~f~~lv~~ 1483 (1495)
|+||||||++|+.|+..|.+.|++..+++|+|+|+||++++..||+|+||++|+|+|+|+|++|++++++.|++|++.
T Consensus 161 lilDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~~~~~y~~l~~~ 238 (241)
T d2pmka1 161 LIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 238 (241)
T ss_dssp EEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHSTTCHHHHHHHH
T ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHHH
T ss_conf 556477655598999999999999858998999978899998499999998999999889999982998789999998
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=495.92 Aligned_cols=240 Identities=30% Similarity=0.486 Sum_probs=230.7
Q ss_pred CCCCEEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHH
Q ss_conf 99621897410678589999410001688508939999969998988999998335669863799969738999977772
Q 000452 1243 PSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLR 1322 (1495)
Q Consensus 1243 p~~g~I~~~nv~~~Y~~~~~~vL~~is~~i~~GekigIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR 1322 (1495)
..+|.|+|+||+|+|+++.++||+||||+|++||++||||+||||||||+++|.|+++|++|+|.|||.|+++++.+++|
T Consensus 12 ~~~g~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr 91 (255)
T d2hyda1 12 IKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLR 91 (255)
T ss_dssp CCSCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHH
T ss_pred CCCCEEEEEEEEEEECCCCCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCCHHHHH
T ss_conf 77887999988999599997606443899839989999889998099999999712786300015399875307888863
Q ss_pred CCCEEECCCCCCCCCCHHHHCCC-CCCCCHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 24389815676787757770499-98999999999999839967897100886521226999889039999999998725
Q 000452 1323 TRLSIIPQDPVMFEGTVRSNVDP-LEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLK 1401 (1495)
Q Consensus 1323 ~~i~iIpQdp~LF~GTIR~NLdp-~~~~sD~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nlS~GQrQll~LARALLk 1401 (1495)
++++++||+|.+|+||||+||.. ....+|+++++|++.+++.+++..+|+||||.++++|.+||||||||+||||||++
T Consensus 92 ~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~ 171 (255)
T d2hyda1 92 NQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLN 171 (255)
T ss_dssp HTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHH
T ss_pred HEEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 41456510156899879999851586799999999999969799997362420103338889849999999999999855
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHCCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHH
Q ss_conf 99869987588899999899999999985699279987059022301398999938489985492478612997689999
Q 000452 1402 RRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSFSQLV 1481 (1495)
Q Consensus 1402 ~~~ILiLDEaTsslD~~Te~~Iq~~Ir~~f~~~TvI~IAHRl~ti~~~DrIlVLd~G~IvE~g~p~~Ll~~~~s~f~~lv 1481 (1495)
+|+||+||||||++|++|+..|.+.|++..+++|+|+|+||++++..||+|+||++|+|+|.|+|++|+++ ++.|++|+
T Consensus 172 ~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~~-~~~y~~l~ 250 (255)
T d2hyda1 172 NPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK-QGAYEHLY 250 (255)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHT-TSHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHC-CCHHHHHH
T ss_conf 99899983765447977999999999987538889999689999985999999989999998899999868-84999999
Q ss_pred HH
Q ss_conf 99
Q 000452 1482 AE 1483 (1495)
Q Consensus 1482 ~~ 1483 (1495)
+.
T Consensus 251 ~~ 252 (255)
T d2hyda1 251 SI 252 (255)
T ss_dssp TT
T ss_pred HH
T ss_conf 97
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=486.69 Aligned_cols=239 Identities=33% Similarity=0.523 Sum_probs=229.8
Q ss_pred CCCEEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHC
Q ss_conf 96218974106785899994100016885089399999699989889999983356698637999697389999777722
Q 000452 1244 SHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRT 1323 (1495)
Q Consensus 1244 ~~g~I~~~nv~~~Y~~~~~~vL~~is~~i~~GekigIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~ 1323 (1495)
..|.|+|+||+|+|+....++|+||||+|++||++||||+||||||||+++|+|+++|++|+|.|||.|+++++..++|+
T Consensus 10 ~~g~I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 89 (253)
T d3b60a1 10 ATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRN 89 (253)
T ss_dssp CCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHH
T ss_pred CCEEEEEEEEEEEECCCCCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHH
T ss_conf 83079999889992999976353328998599999999999985999999986216888468987880121110665420
Q ss_pred CCEEECCCCCCCCCCHHHHCCCC--CCCCHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 43898156767877577704999--8999999999999839967897100886521226999889039999999998725
Q 000452 1324 RLSIIPQDPVMFEGTVRSNVDPL--EEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLK 1401 (1495)
Q Consensus 1324 ~i~iIpQdp~LF~GTIR~NLdp~--~~~sD~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nlS~GQrQll~LARALLk 1401 (1495)
+++++||+|.+|++|+++|+... ..++++++++|++.+++.++++.+|+|||+.++++|.+||||||||+||||||++
T Consensus 90 ~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~ 169 (253)
T d3b60a1 90 QVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLR 169 (253)
T ss_dssp TEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHH
T ss_pred EEEEEEECCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 68799502544786202433205722089999999999981799997355441014348889849999999999999954
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHCCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHH
Q ss_conf 99869987588899999899999999985699279987059022301398999938489985492478612997689999
Q 000452 1402 RRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSFSQLV 1481 (1495)
Q Consensus 1402 ~~~ILiLDEaTsslD~~Te~~Iq~~Ir~~f~~~TvI~IAHRl~ti~~~DrIlVLd~G~IvE~g~p~~Ll~~~~s~f~~lv 1481 (1495)
+|+||+||||||++|+.|+..|.+.|++..+++|+|+|+||++++..||+|+||++|+|+|+|+|++|+++ ++.|++|+
T Consensus 170 ~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~~-~~~y~~l~ 248 (253)
T d3b60a1 170 DSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQ-HGVYAQLH 248 (253)
T ss_dssp CCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHH-TSSHHHHH
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHC-CCHHHHHH
T ss_conf 99889951644458988999999999875227889999887999985999999989999998899999868-93999999
Q ss_pred HH
Q ss_conf 99
Q 000452 1482 AE 1483 (1495)
Q Consensus 1482 ~~ 1483 (1495)
+.
T Consensus 249 ~~ 250 (253)
T d3b60a1 249 KM 250 (253)
T ss_dssp HH
T ss_pred HH
T ss_conf 97
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=474.72 Aligned_cols=239 Identities=28% Similarity=0.423 Sum_probs=226.2
Q ss_pred CCCCEEEEEEEEEEECCC-CCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHH
Q ss_conf 996218974106785899-9941000168850893999996999898899999833566986379996973899997777
Q 000452 1243 PSHGKIDLRDLQVRYAPH-MPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDL 1321 (1495)
Q Consensus 1243 p~~g~I~~~nv~~~Y~~~-~~~vL~~is~~i~~GekigIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~L 1321 (1495)
+.+|.|+|+||+|+|+.. ..++|+||||+|++||++||||+||||||||+++|.|+++|++|+|.|||.|+++++..++
T Consensus 7 ~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~ 86 (251)
T d1jj7a_ 7 HLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYL 86 (251)
T ss_dssp CCCCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHH
T ss_pred CCCCEEEEEEEEEECCCCCCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCHHHHHHH
T ss_conf 65336999998998899999976744389984998999999999849999999861437876899889985311013788
Q ss_pred HCCCEEECCCCCCCCCCHHHHCCCC--CCCCHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 2243898156767877577704999--89999999999998399678971008865212269998890399999999987
Q 000452 1322 RTRLSIIPQDPVMFEGTVRSNVDPL--EEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVL 1399 (1495)
Q Consensus 1322 R~~i~iIpQdp~LF~GTIR~NLdp~--~~~sD~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nlS~GQrQll~LARAL 1399 (1495)
|+++++|||+|.+|++|||+|+... ...++++++++++++++.+++..+|+|+|+.++++|.+||||||||+||||||
T Consensus 87 r~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal 166 (251)
T d1jj7a_ 87 HRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARAL 166 (251)
T ss_dssp HHHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHCEEEEEEECC
T ss_conf 87765404565002763465545421013027889999999989999985612111367516766895470489986044
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEECCCHHHHCCCEEEEEECCEEEEECCHHHHHHCCCCHH
Q ss_conf 259986998758889999989999999998569--927998705902230139899993848998549247861299768
Q 000452 1400 LKRRKILMLDEATASVDTATDNLIQQSLRQHFS--DCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSF 1477 (1495)
Q Consensus 1400 Lk~~~ILiLDEaTsslD~~Te~~Iq~~Ir~~f~--~~TvI~IAHRl~ti~~~DrIlVLd~G~IvE~g~p~~Ll~~~~s~f 1477 (1495)
+++|+|++||||||++|+.|+..|++.|++..+ ++|+|+|+||++++..||||+||++|+|+|+|+|++|+++ ++.|
T Consensus 167 ~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~~-~~~y 245 (251)
T d1jj7a_ 167 IRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEK-KGCY 245 (251)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHH-TSHH
T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHC-CCHH
T ss_conf 568707871675765685368999999999765069899999597999985999999989999998899999859-7588
Q ss_pred HHHHH
Q ss_conf 99999
Q 000452 1478 SQLVA 1482 (1495)
Q Consensus 1478 ~~lv~ 1482 (1495)
++|++
T Consensus 246 ~~l~~ 250 (251)
T d1jj7a_ 246 WAMVQ 250 (251)
T ss_dssp HHHHC
T ss_pred HHHHC
T ss_conf 99962
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=481.23 Aligned_cols=234 Identities=32% Similarity=0.554 Sum_probs=225.0
Q ss_pred EEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEE
Q ss_conf 89741067858999941000168850893999996999898899999833566986379996973899997777224389
Q 000452 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSI 1327 (1495)
Q Consensus 1248 I~~~nv~~~Y~~~~~~vL~~is~~i~~GekigIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1327 (1495)
|+++||+|+|+++ +++|+||||+|++||++||||+||||||||+++|.|+++|++|+|.|||.|+++++.+++|+++++
T Consensus 2 le~knvsf~Y~~~-~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 80 (242)
T d1mv5a_ 2 LSARHVDFAYDDS-EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (242)
T ss_dssp EEEEEEEECSSSS-SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred EEEEEEEEECCCC-CCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCEEECCCCHHHHHHHEEE
T ss_conf 7999889987999-841422589985999999999999979999999999609898779889988442467888743679
Q ss_pred ECCCCCCCCCCHHHHCCCC--CCCCHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCE
Q ss_conf 8156767877577704999--89999999999998399678971008865212269998890399999999987259986
Q 000452 1328 IPQDPVMFEGTVRSNVDPL--EEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKI 1405 (1495)
Q Consensus 1328 IpQdp~LF~GTIR~NLdp~--~~~sD~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nlS~GQrQll~LARALLk~~~I 1405 (1495)
|||||.+|+||||+|+... ...++++++++++.+++.+++..+|+++++.++++|.+||||||||+||||||+++|+|
T Consensus 81 v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~i 160 (242)
T d1mv5a_ 81 VSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKI 160 (242)
T ss_dssp ECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred ECCCCCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 75665457853454301244555423567789999975554203742101523687898799999999999998529989
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHCCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHHH
Q ss_conf 998758889999989999999998569927998705902230139899993848998549247861299768999999
Q 000452 1406 LMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSFSQLVAE 1483 (1495)
Q Consensus 1406 LiLDEaTsslD~~Te~~Iq~~Ir~~f~~~TvI~IAHRl~ti~~~DrIlVLd~G~IvE~g~p~~Ll~~~~s~f~~lv~~ 1483 (1495)
|+||||||++|+.++..|++.|++..+++|+|+|+||++++..||+|+||++|+|+|+|+|++|+++ ++.|++|+++
T Consensus 161 lilDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~~-~~~y~~l~~~ 237 (242)
T d1mv5a_ 161 LMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKYVSE 237 (242)
T ss_dssp EEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHH-CHHHHHHHHC
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHC-CHHHHHHHHH
T ss_conf 9965886556988999998878887179989999787999984999999989999999999999868-9699999999
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=434.94 Aligned_cols=230 Identities=31% Similarity=0.458 Sum_probs=213.7
Q ss_pred CCCCCCCCEEEEEEEEEECCCCCCCCCCCCEEEEECCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEECCE-------
Q ss_conf 9999864089983389835999999411311786288099998137863999999983798798758998494-------
Q 000452 610 PRGSSETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------- 682 (1495)
Q Consensus 610 ~~~~~~~~I~i~~~~fsw~~~~~~~~L~~inl~i~~G~~vaIvG~~GSGKStLl~~ilGe~~~~~G~i~i~g~------- 682 (1495)
|.....+.|+++|++|+|+.. ..++|+|+||+|++|+++||+|++|||||||+++|+|.+++++|+|.++|.
T Consensus 9 pl~~~~g~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~ 87 (255)
T d2hyda1 9 PIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLT 87 (255)
T ss_dssp CCCCCSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCH
T ss_pred CCCCCCCEEEEEEEEEEECCC-CCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCCH
T ss_conf 777778879999889995999-9760644389983998999988999809999999971278630001539987530788
Q ss_pred ------EEEECCCCCCCCCCHHHHHHCCCC-CCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf ------799926775667558899721998-9999999999981928888634789864014798866647999999999
Q 000452 683 ------KAYVAQSPWIQSGKIEDNILFGKE-MDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIAR 755 (1495)
Q Consensus 683 ------~ayv~Q~pwi~~gTIreNIlfG~~-~d~~~y~~vi~ac~L~~Dl~~lp~Gd~T~IGe~G~nLSGGQKqRIaLAR 755 (1495)
++||+|+|++|++||+|||+||.+ .++++..++++.|++.++++.+|+|++|.+||+|.+|||||||||+|||
T Consensus 88 ~~lr~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iAR 167 (255)
T d2hyda1 88 GSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIAR 167 (255)
T ss_dssp HHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHH
T ss_pred HHHHHEEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHH
T ss_conf 88634145651015689987999985158679999999999996979999736242010333888984999999999999
Q ss_pred HHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEEEECCEEEEECCHHHHHHCCCCH
Q ss_conf 86039978674286776698889999999998875897799980577742358789999299799904867897129821
Q 000452 756 ALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVINSGTDF 835 (1495)
Q Consensus 756 Aly~~adI~LLDDp~SalD~~t~~~if~~~i~~~l~~kTvIlvTH~~~~l~~aD~Iivl~~G~I~~~G~~~~L~~~~~~~ 835 (1495)
|+|++|+|+|||||||+||++++..|++ .+..+.+++|+|+|||+++.+..||+|++|++|+|++.|+++||+++++.|
T Consensus 168 al~~~p~ililDEpts~LD~~t~~~i~~-~l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~~~~~y 246 (255)
T d2hyda1 168 IFLNNPPILILDEATSALDLESESIIQE-ALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAY 246 (255)
T ss_dssp HHHHCCSEEEEESTTTTCCHHHHHHHHH-HHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHTTSHH
T ss_pred HHHCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHH
T ss_conf 9855998999837654479779999999-999875388899996899999859999999899999988999998688499
Q ss_pred HHHHHH
Q ss_conf 678998
Q 000452 836 MELVDA 841 (1495)
Q Consensus 836 ~~l~~~ 841 (1495)
.+++..
T Consensus 247 ~~l~~~ 252 (255)
T d2hyda1 247 EHLYSI 252 (255)
T ss_dssp HHHHTT
T ss_pred HHHHHH
T ss_conf 999997
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=429.40 Aligned_cols=224 Identities=28% Similarity=0.415 Sum_probs=210.2
Q ss_pred CEEEEEEEEEECCCCCCCCCCCCEEEEECCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEECCE-------------E
Q ss_conf 089983389835999999411311786288099998137863999999983798798758998494-------------7
Q 000452 617 AIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------K 683 (1495)
Q Consensus 617 ~I~i~~~~fsw~~~~~~~~L~~inl~i~~G~~vaIvG~~GSGKStLl~~ilGe~~~~~G~i~i~g~-------------~ 683 (1495)
.|+|+|++|+|+.+ .+++|+|+||++++|+++||+|++|||||||+++|+|.++|++|+|.++|. +
T Consensus 1 eI~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i 79 (241)
T d2pmka1 1 DITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 79 (241)
T ss_dssp EEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred CEEEEEEEEEECCC-CCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEEECCCCHHHHHCEE
T ss_conf 92999999990899-96037424899849999999999999899999999735788888999999994400246553528
Q ss_pred EEECCCCCCCCCCHHHHHHCCCC-CCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 99926775667558899721998-99999999999819288886347898640147988666479999999998603997
Q 000452 684 AYVAQSPWIQSGKIEDNILFGKE-MDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDAD 762 (1495)
Q Consensus 684 ayv~Q~pwi~~gTIreNIlfG~~-~d~~~y~~vi~ac~L~~Dl~~lp~Gd~T~IGe~G~nLSGGQKqRIaLARAly~~ad 762 (1495)
+||+|+||+|++||+|||.|+.+ .+.+++.++++.|.+.++++.+|.|++|.+|++|.+|||||||||+||||++++|+
T Consensus 80 ~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~ 159 (241)
T d2pmka1 80 GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPK 159 (241)
T ss_dssp EEECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCS
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 89824465578400035223575543888999999975578887632013443278788669889898754434441651
Q ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEEEECCEEEEECCHHHHHHC-CCCHHHHHHH
Q ss_conf 867428677669888999999999887589779998057774235878999929979990486789712-9821678998
Q 000452 763 IYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVINS-GTDFMELVDA 841 (1495)
Q Consensus 763 I~LLDDp~SalD~~t~~~if~~~i~~~l~~kTvIlvTH~~~~l~~aD~Iivl~~G~I~~~G~~~~L~~~-~~~~~~l~~~ 841 (1495)
|+|||||||+||+.+++.|++ .+..+.+++|+|+|||+++.+..||+|++|++|+|++.|+++||+++ +..|.+++..
T Consensus 160 ililDEpts~LD~~~~~~i~~-~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~~~~~y~~l~~~ 238 (241)
T d2pmka1 160 ILIFDEATSALDYESEHVIMR-NMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 238 (241)
T ss_dssp EEEECCCCSCCCHHHHHHHHH-HHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHCCCCCCCHHHHHHHHH-HHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHHH
T ss_conf 355647765559899999999-9999858998999978899998499999998999999889999982998789999998
Q ss_pred H
Q ss_conf 7
Q 000452 842 H 842 (1495)
Q Consensus 842 ~ 842 (1495)
+
T Consensus 239 Q 239 (241)
T d2pmka1 239 Q 239 (241)
T ss_dssp H
T ss_pred H
T ss_conf 1
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=423.46 Aligned_cols=226 Identities=29% Similarity=0.453 Sum_probs=212.9
Q ss_pred CCCEEEEEEEEEECCCCCCCCCCCCEEEEECCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEECCE------------
Q ss_conf 64089983389835999999411311786288099998137863999999983798798758998494------------
Q 000452 615 ETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------ 682 (1495)
Q Consensus 615 ~~~I~i~~~~fsw~~~~~~~~L~~inl~i~~G~~vaIvG~~GSGKStLl~~ilGe~~~~~G~i~i~g~------------ 682 (1495)
.+.|+++|++|+|+.. +.++|+|+||+|++|+++||+|++|||||||+++|+|.++|++|+|.++|.
T Consensus 11 ~g~I~~~nvsf~Y~~~-~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 89 (253)
T d3b60a1 11 TGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRN 89 (253)
T ss_dssp CCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHH
T ss_pred CEEEEEEEEEEEECCC-CCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHH
T ss_conf 3079999889992999-976353328998599999999999985999999986216888468987880121110665420
Q ss_pred -EEEECCCCCCCCCCHHHHHHCCC--CCCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf -79992677566755889972199--899999999999819288886347898640147988666479999999998603
Q 000452 683 -KAYVAQSPWIQSGKIEDNILFGK--EMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQ 759 (1495)
Q Consensus 683 -~ayv~Q~pwi~~gTIreNIlfG~--~~d~~~y~~vi~ac~L~~Dl~~lp~Gd~T~IGe~G~nLSGGQKqRIaLARAly~ 759 (1495)
++||+|+|+++++|+++|+.||. ..++++++++++.|++.++++.+|+|++|.+|++|.+|||||||||+||||+++
T Consensus 90 ~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~ 169 (253)
T d3b60a1 90 QVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLR 169 (253)
T ss_dssp TEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHH
T ss_pred EEEEEEECCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 68799502544786202433205722089999999999981799997355441014348889849999999999999954
Q ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEEEECCEEEEECCHHHHHHCCCCHHHHH
Q ss_conf 99786742867766988899999999988758977999805777423587899992997999048678971298216789
Q 000452 760 DADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVINSGTDFMELV 839 (1495)
Q Consensus 760 ~adI~LLDDp~SalD~~t~~~if~~~i~~~l~~kTvIlvTH~~~~l~~aD~Iivl~~G~I~~~G~~~~L~~~~~~~~~l~ 839 (1495)
+|+|+|||||||+||+.++..|++ .+..+.+++|+|+|||+++.+..||+|++|++|+|++.|+++||+++++.|.+++
T Consensus 170 ~p~ililDEpts~LD~~~~~~i~~-~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~~~~~y~~l~ 248 (253)
T d3b60a1 170 DSPILILDEATSALDTESERAIQA-ALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQLH 248 (253)
T ss_dssp CCSEEEEETTTSSCCHHHHHHHHH-HHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHHTSSHHHHH
T ss_pred CCCEEEECCCCCCCCHHHHHHHHH-HHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHHHHH
T ss_conf 998899516444589889999999-9987522788999988799998599999998999999889999986893999999
Q ss_pred HHH
Q ss_conf 987
Q 000452 840 DAH 842 (1495)
Q Consensus 840 ~~~ 842 (1495)
+.+
T Consensus 249 ~~Q 251 (253)
T d3b60a1 249 KMQ 251 (253)
T ss_dssp HHT
T ss_pred HHC
T ss_conf 972
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=415.78 Aligned_cols=225 Identities=26% Similarity=0.377 Sum_probs=208.3
Q ss_pred CCCEEEEEEEEEECCCCCCCCCCCCEEEEECCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEECCE------------
Q ss_conf 64089983389835999999411311786288099998137863999999983798798758998494------------
Q 000452 615 ETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------ 682 (1495)
Q Consensus 615 ~~~I~i~~~~fsw~~~~~~~~L~~inl~i~~G~~vaIvG~~GSGKStLl~~ilGe~~~~~G~i~i~g~------------ 682 (1495)
.+.|+++|++|+|+..++.++|+|+||+|++|++++|+|++|||||||+++|+|.++|.+|+|.++|.
T Consensus 9 ~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 88 (251)
T d1jj7a_ 9 EGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHR 88 (251)
T ss_dssp CCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred CCEEEEEEEEEECCCCCCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCHHHHHHHHH
T ss_conf 33699999899889999997674438998499899999999984999999986143787689988998531101378887
Q ss_pred -EEEECCCCCCCCCCHHHHHHCCCC--CCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf -799926775667558899721998--99999999999819288886347898640147988666479999999998603
Q 000452 683 -KAYVAQSPWIQSGKIEDNILFGKE--MDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQ 759 (1495)
Q Consensus 683 -~ayv~Q~pwi~~gTIreNIlfG~~--~d~~~y~~vi~ac~L~~Dl~~lp~Gd~T~IGe~G~nLSGGQKqRIaLARAly~ 759 (1495)
++||+|+|++|++||+|||.||.+ .+.++..++.+.+++...++.+|+|++|.++++|.+|||||||||+||||+++
T Consensus 89 ~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal~~ 168 (251)
T d1jj7a_ 89 QVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIR 168 (251)
T ss_dssp HEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHHTT
T ss_pred HHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHCEEEEEEECCCC
T ss_conf 76540456500276346554542101302788999999998999998561211136751676689547048998604456
Q ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHHH--CCCEEEEEECCCCCCCCCCEEEEEECCEEEEECCHHHHHHCCCCHHH
Q ss_conf 9978674286776698889999999998875--89779998057774235878999929979990486789712982167
Q 000452 760 DADIYLFDDPFSAVDAHTGSHLFKEVLLGLL--NSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVINSGTDFME 837 (1495)
Q Consensus 760 ~adI~LLDDp~SalD~~t~~~if~~~i~~~l--~~kTvIlvTH~~~~l~~aD~Iivl~~G~I~~~G~~~~L~~~~~~~~~ 837 (1495)
+|+|+|||||||+||++++..+++. +..+. .++|+|+|||+++.+..||+|++|++|+|++.|+++||+++++.|.+
T Consensus 169 ~p~ililDEpTs~LD~~~~~~i~~~-l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~~~~~y~~ 247 (251)
T d1jj7a_ 169 KPCVLILDDATSALDANSQLQVEQL-LYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGCYWA 247 (251)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHH-HHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHTSHHHH
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHH-HHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHHH
T ss_conf 8707871675765685368999999-999765069899999597999985999999989999998899999859758899
Q ss_pred HHH
Q ss_conf 899
Q 000452 838 LVD 840 (1495)
Q Consensus 838 l~~ 840 (1495)
+++
T Consensus 248 l~~ 250 (251)
T d1jj7a_ 248 MVQ 250 (251)
T ss_dssp HHC
T ss_pred HHC
T ss_conf 962
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=0 Score=409.28 Aligned_cols=219 Identities=38% Similarity=0.675 Sum_probs=197.4
Q ss_pred CCEEEEEEEEEECCCCCCCCCCCCEEEEECCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEECCCCCCCCC
Q ss_conf 40899833898359999994113117862880999981378639999999837987987589984947999267756675
Q 000452 616 TAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSG 695 (1495)
Q Consensus 616 ~~I~i~~~~fsw~~~~~~~~L~~inl~i~~G~~vaIvG~~GSGKStLl~~ilGe~~~~~G~i~i~g~~ayv~Q~pwi~~g 695 (1495)
..|.|++.+| + .+|+|+|+||+|++|+++||+||+|||||||+++|+|++++++|+|.++|+++||+|.||++++
T Consensus 37 ~~i~~~~~~~--~---g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~~ 111 (281)
T d1r0wa_ 37 NNVSFSHLCL--V---GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMPG 111 (281)
T ss_dssp ---CHHHHHH--T---TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCSCEEEECSSCCCCSE
T ss_pred CCEEEEECCC--C---CCEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEEEEECCCCCCCC
T ss_conf 9679997698--9---9767737599985999999998999829999999957974788289999999998164302676
Q ss_pred CHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCH
Q ss_conf 58899721998999999999998192888863478986401479886664799999999986039978674286776698
Q 000452 696 KIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDA 775 (1495)
Q Consensus 696 TIreNIlfG~~~d~~~y~~vi~ac~L~~Dl~~lp~Gd~T~IGe~G~nLSGGQKqRIaLARAly~~adI~LLDDp~SalD~ 775 (1495)
||+|||.||..+++.+++++++.|.+..|+..+|+|++|.+|++|.+|||||||||+||||++++|+|+|||||||+||+
T Consensus 112 tv~eni~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~ 191 (281)
T d1r0wa_ 112 TIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDV 191 (281)
T ss_dssp EHHHHHTTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCH
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCH
T ss_conf 03214203334560579999999776999984612332355554237799999999999999869635133385544898
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEEEECCEEEEECCHHHHHHCCCCHHHHH
Q ss_conf 8899999999988758977999805777423587899992997999048678971298216789
Q 000452 776 HTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVINSGTDFMELV 839 (1495)
Q Consensus 776 ~t~~~if~~~i~~~l~~kTvIlvTH~~~~l~~aD~Iivl~~G~I~~~G~~~~L~~~~~~~~~l~ 839 (1495)
.+...+++.++....+++|+|+|||+++.+..||+|++|++|+|++.|+++||+....+|...+
T Consensus 192 ~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~~~~~~~~~~ 255 (281)
T d1r0wa_ 192 FTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKL 255 (281)
T ss_dssp HHHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCEEEEEECCEEEEECCHHHHHCCCCHHHHHH
T ss_conf 9999999999988628999999925289998599999998999999878999960594899987
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=414.20 Aligned_cols=221 Identities=28% Similarity=0.462 Sum_probs=207.7
Q ss_pred EEEEEEEEEECCCCCCCCCCCCEEEEECCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEECCE-------------EE
Q ss_conf 89983389835999999411311786288099998137863999999983798798758998494-------------79
Q 000452 618 IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------KA 684 (1495)
Q Consensus 618 I~i~~~~fsw~~~~~~~~L~~inl~i~~G~~vaIvG~~GSGKStLl~~ilGe~~~~~G~i~i~g~-------------~a 684 (1495)
++++|++|+|+. .+++|+|+||++++|+++||+||+|||||||+++|+|.++|++|+|.++|. ++
T Consensus 2 le~knvsf~Y~~--~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 79 (242)
T d1mv5a_ 2 LSARHVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (242)
T ss_dssp EEEEEEEECSSS--SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEECCC--CCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCEEECCCCHHHHHHHEE
T ss_conf 799988998799--984142258998599999999999997999999999960989877988998844246788874367
Q ss_pred EECCCCCCCCCCHHHHHHCCC--CCCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 992677566755889972199--899999999999819288886347898640147988666479999999998603997
Q 000452 685 YVAQSPWIQSGKIEDNILFGK--EMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDAD 762 (1495)
Q Consensus 685 yv~Q~pwi~~gTIreNIlfG~--~~d~~~y~~vi~ac~L~~Dl~~lp~Gd~T~IGe~G~nLSGGQKqRIaLARAly~~ad 762 (1495)
||+|+|++|++||+|||.++. ..++++.+++++.+.+..++..+|+|.+|.+||+|.+|||||||||+||||++++|+
T Consensus 80 ~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~ 159 (242)
T d1mv5a_ 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (242)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EECCCCCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 97566545785345430124455542356778999997555420374210152368789879999999999999852998
Q ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHH
Q ss_conf 8674286776698889999999998875897799980577742358789999299799904867897129821678998
Q 000452 763 IYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVINSGTDFMELVDA 841 (1495)
Q Consensus 763 I~LLDDp~SalD~~t~~~if~~~i~~~l~~kTvIlvTH~~~~l~~aD~Iivl~~G~I~~~G~~~~L~~~~~~~~~l~~~ 841 (1495)
|+|||||||+||++++..+++ .+..+.+++|+|+|||+++.+..||+|++|++|+|++.|+++||+++++.|.+++..
T Consensus 160 ililDEpts~LD~~~~~~i~~-~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~~~~~y~~l~~~ 237 (242)
T d1mv5a_ 160 ILMLDEATASLDSESESMVQK-ALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVSE 237 (242)
T ss_dssp EEEEECCSCSSCSSSCCHHHH-HHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHHCHHHHHHHHC
T ss_pred EEEECCCCCCCCHHHHHHHHH-HHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCHHHHHHHHH
T ss_conf 999658865569889999988-788871799899997879999849999999899999999999998689699999999
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=0 Score=405.61 Aligned_cols=220 Identities=23% Similarity=0.341 Sum_probs=202.3
Q ss_pred CCEEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCC
Q ss_conf 62189741067858999941000168850893999996999898899999833566986379996973899997777224
Q 000452 1245 HGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTR 1324 (1495)
Q Consensus 1245 ~g~I~~~nv~~~Y~~~~~~vL~~is~~i~~GekigIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~ 1324 (1495)
.+.|.|+|+++.+ .+||+||||+|++||++||||++|||||||+++|+|+++|++|+|.+|| +
T Consensus 36 ~~~i~~~~~~~~g----~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g-------------~ 98 (281)
T d1r0wa_ 36 ENNVSFSHLCLVG----NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------R 98 (281)
T ss_dssp ----CHHHHHHTT----CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS-------------C
T ss_pred CCCEEEEECCCCC----CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC-------------E
T ss_conf 8967999769899----7677375999859999999989998299999999579747882899999-------------9
Q ss_pred CEEECCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 38981567678775777049998999999999999839967897100886521226999889039999999998725998
Q 000452 1325 LSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRK 1404 (1495)
Q Consensus 1325 i~iIpQdp~LF~GTIR~NLdp~~~~sD~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nlS~GQrQll~LARALLk~~~ 1404 (1495)
++++||+|.+|+||||+|+.+...+++.+++++++.+++.+.+..+|+++++.++++|.+||||||||++|||||+++|+
T Consensus 99 i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~ 178 (281)
T d1r0wa_ 99 VSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDAD 178 (281)
T ss_dssp EEEECSSCCCCSEEHHHHHTTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCS
T ss_pred EEEEECCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 99981643026760321420333456057999999977699998461233235555423779999999999999986963
Q ss_pred EEEEECCCCCCCHHHHHHHHHH-HHHHCCCCEEEEEECCCHHHHCCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHH
Q ss_conf 6998758889999989999999-99856992799870590223013989999384899854924786129976899999
Q 000452 1405 ILMLDEATASVDTATDNLIQQS-LRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSFSQLVA 1482 (1495)
Q Consensus 1405 ILiLDEaTsslD~~Te~~Iq~~-Ir~~f~~~TvI~IAHRl~ti~~~DrIlVLd~G~IvE~g~p~~Ll~~~~s~f~~lv~ 1482 (1495)
||+||||||++|+.|+..|.+. +....+++|+|+|+||++.+..||||++|++|+|+++|+|++|++.. +.|.+...
T Consensus 179 illLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~~~-~~~~~~~~ 256 (281)
T d1r0wa_ 179 LYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLR-PDFSSKLM 256 (281)
T ss_dssp EEEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHC-HHHHHHHH
T ss_pred CHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCEEEEEECCEEEEECCHHHHHCCC-CHHHHHHC
T ss_conf 5133385544898999999999998862899999992528999859999999899999987899996059-48999872
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=4.4e-41 Score=356.06 Aligned_cols=214 Identities=22% Similarity=0.368 Sum_probs=192.6
Q ss_pred EEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEE
Q ss_conf 89741067858999941000168850893999996999898899999833566986379996973899997777224389
Q 000452 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSI 1327 (1495)
Q Consensus 1248 I~~~nv~~~Y~~~~~~vL~~is~~i~~GekigIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1327 (1495)
|+++|++.+|.. .+|+||||+|++||.+||+|++|||||||+++|.|+.+|++|+|.+||.|+++++.. |+++++
T Consensus 2 i~v~nlsk~y~~---~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~--~r~ig~ 76 (229)
T d3d31a2 2 IEIESLSRKWKN---FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDIAF 76 (229)
T ss_dssp EEEEEEEEECSS---CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHH--HHTCEE
T ss_pred EEEEEEEEEECC---EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHH--HHCCEE
T ss_conf 899989999499---788433789879989999989998299999999647688878899956734652165--740561
Q ss_pred ECCCCCCCCC-CHHHHCCC----CCCCCHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 8156767877-57770499----989999999999998399678971008865212269998890399999999987259
Q 000452 1328 IPQDPVMFEG-TVRSNVDP----LEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKR 1402 (1495)
Q Consensus 1328 IpQdp~LF~G-TIR~NLdp----~~~~sD~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nlS~GQrQll~LARALLk~ 1402 (1495)
|||+|.||+. |+++|+.. .+.-.++++.++++.+++.++.+..| ..||||||||++|||||+.+
T Consensus 77 v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSGG~~QRvaiAraL~~~ 145 (229)
T d3d31a2 77 VYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNP-----------LTLSGGEQQRVALARALVTN 145 (229)
T ss_dssp ECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCG-----------GGSCHHHHHHHHHHHHTTSC
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHCCH-----------HHCCHHHHCCHHHHHHHHCC
T ss_conf 5121111746657788888776405538999999999825655575895-----------54799984014030434436
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCCHHHHC-CCEEEEEECCEEEEECCHHHHHHCCCCHH
Q ss_conf 98699875888999998999999999856--99279987059022301-39899993848998549247861299768
Q 000452 1403 RKILMLDEATASVDTATDNLIQQSLRQHF--SDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLENKSSSF 1477 (1495)
Q Consensus 1403 ~~ILiLDEaTsslD~~Te~~Iq~~Ir~~f--~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~g~p~~Ll~~~~s~f 1477 (1495)
|+||+|||||+++|+.+...|++.|++.. .+.|+|+|+|++..+.. ||||++|++|++++.|+|+++++++...+
T Consensus 146 P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~P~~~~ 223 (229)
T d3d31a2 146 PKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGR 223 (229)
T ss_dssp CSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCCTTH
T ss_pred CCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHH
T ss_conf 771443478767998999999999999986479689997499999999699999997999999869999986899879
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6.6e-41 Score=354.60 Aligned_cols=216 Identities=19% Similarity=0.314 Sum_probs=192.9
Q ss_pred EEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEE
Q ss_conf 89741067858999941000168850893999996999898899999833566986379996973899997777224389
Q 000452 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSI 1327 (1495)
Q Consensus 1248 I~~~nv~~~Y~~~~~~vL~~is~~i~~GekigIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1327 (1495)
|+++||+++|.. ..+|+||||+|++||.+||+|+||||||||++++.|+.+|++|+|.+||.|+++.+. .|+++++
T Consensus 1 Iev~nv~k~yg~--~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~--~~r~ig~ 76 (232)
T d2awna2 1 VQLQNVTKAWGE--VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPP--AERGVGM 76 (232)
T ss_dssp EEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCG--GGTCEEE
T ss_pred CEEEEEEEEECC--EEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCH--HHCEEEE
T ss_conf 999999999899--999811177886998999998999829999999965878888889999997788864--4432223
Q ss_pred ECCCCCCCCC-CHHHHCCCCCC---C----CHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 8156767877-57770499989---9----99999999998399678971008865212269998890399999999987
Q 000452 1328 IPQDPVMFEG-TVRSNVDPLEE---Y----TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVL 1399 (1495)
Q Consensus 1328 IpQdp~LF~G-TIR~NLdp~~~---~----sD~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nlS~GQrQll~LARAL 1399 (1495)
|||+|.+|+. |+++|+..... . .++++.++++.+++.+..+..| ..||||||||++|||||
T Consensus 77 v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~-----------~~LSGGqkQRvaiAraL 145 (232)
T d2awna2 77 VFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP-----------KALSGGQRQRVAIGRTL 145 (232)
T ss_dssp ECSSCCC---------------------CHHHHHHHHHHHHC--------------------------------CHHHHH
T ss_pred ECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCH-----------HHCCHHHHHHHHHHHHH
T ss_conf 4334202643337889789998759988999999999997578865664896-----------56999999999999997
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCCHHHHC-CCEEEEEECCEEEEECCHHHHHHCCCCH
Q ss_conf 25998699875888999998999999999856--99279987059022301-3989999384899854924786129976
Q 000452 1400 LKRRKILMLDEATASVDTATDNLIQQSLRQHF--SDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLENKSSS 1476 (1495)
Q Consensus 1400 Lk~~~ILiLDEaTsslD~~Te~~Iq~~Ir~~f--~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~g~p~~Ll~~~~s~ 1476 (1495)
+.+|++|+|||||+++|+.+...|++.|++.. .+.|+|+|+|++..+.. ||||++|++|+|++.|+|+++++++...
T Consensus 146 ~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~~~ 225 (232)
T d2awna2 146 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADR 225 (232)
T ss_dssp HTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBH
T ss_pred HCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHHCCCCH
T ss_conf 03998899758887889889989999999998742987999948999999969999999799999980899997389997
Q ss_pred HH
Q ss_conf 89
Q 000452 1477 FS 1478 (1495)
Q Consensus 1477 f~ 1478 (1495)
|.
T Consensus 226 ~v 227 (232)
T d2awna2 226 FV 227 (232)
T ss_dssp HH
T ss_pred HH
T ss_conf 99
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=1.7e-40 Score=351.10 Aligned_cols=217 Identities=19% Similarity=0.330 Sum_probs=192.2
Q ss_pred EEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCE
Q ss_conf 18974106785899994100016885089399999699989889999983356698637999697389999777722438
Q 000452 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLS 1326 (1495)
Q Consensus 1247 ~I~~~nv~~~Y~~~~~~vL~~is~~i~~GekigIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1326 (1495)
.|+++|++.+|.. ..+|+||||++++||.+||+|++|||||||++++.|+++|++|+|.+||.|+++.+.. |++++
T Consensus 6 ~I~v~nlsk~yg~--~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~ig 81 (239)
T d1v43a3 6 EVKLENLTKRFGN--FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNIS 81 (239)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTEE
T ss_pred EEEEEEEEEEECC--EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCC--CCEEE
T ss_conf 4999879999999--9998130678879989999999998299999999758999878799916413547700--01589
Q ss_pred EECCCCCCCCC-CHHHHCCCCC---CCCH----HHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 98156767877-5777049998---9999----99999999839967897100886521226999889039999999998
Q 000452 1327 IIPQDPVMFEG-TVRSNVDPLE---EYTD----EQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRV 1398 (1495)
Q Consensus 1327 iIpQdp~LF~G-TIR~NLdp~~---~~sD----~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nlS~GQrQll~LARA 1398 (1495)
++||+|.+|+. |+++|+.... ..+. +.+.++|+.+++.++....| ..||||||||++||||
T Consensus 82 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSGGq~QRvaiAra 150 (239)
T d1v43a3 82 MVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYP-----------AQLSGGQRQRVAVARA 150 (239)
T ss_dssp EEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----------TTCCSSCHHHHHHHHH
T ss_pred EEEECHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCH-----------HHCCHHHHHHHHHHHH
T ss_conf 98003353422209999999998739999999999999998759855660995-----------4699999889999766
Q ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCCHHHHC-CCEEEEEECCEEEEECCHHHHHHCCCC
Q ss_conf 725998699875888999998999999999856--99279987059022301-398999938489985492478612997
Q 000452 1399 LLKRRKILMLDEATASVDTATDNLIQQSLRQHF--SDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLENKSS 1475 (1495)
Q Consensus 1399 LLk~~~ILiLDEaTsslD~~Te~~Iq~~Ir~~f--~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~g~p~~Ll~~~~s 1475 (1495)
|..+|+||+|||||+++|+.+...|++.|++.. .++|+|+|+|++..+.. ||||++|++|+|++.|+|+++.+++..
T Consensus 151 L~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~~ 230 (239)
T d1v43a3 151 IVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNS 230 (239)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSB
T ss_pred HCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCC
T ss_conf 40499824306886668989998999999999873198079994899999986999999989999998599999868999
Q ss_pred HHH
Q ss_conf 689
Q 000452 1476 SFS 1478 (1495)
Q Consensus 1476 ~f~ 1478 (1495)
.|.
T Consensus 231 ~~~ 233 (239)
T d1v43a3 231 VFV 233 (239)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 899
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=2e-41 Score=358.93 Aligned_cols=221 Identities=19% Similarity=0.315 Sum_probs=195.3
Q ss_pred EEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCC---HHHHHC
Q ss_conf 18974106785899994100016885089399999699989889999983356698637999697389999---777722
Q 000452 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIG---LHDLRT 1323 (1495)
Q Consensus 1247 ~I~~~nv~~~Y~~~~~~vL~~is~~i~~GekigIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~---l~~LR~ 1323 (1495)
.|+++|++.+|+.+...+|+||||+|++||.+||+|+||||||||+++|.|+.+|++|+|.+||.|++..+ ....|.
T Consensus 3 ~i~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr 82 (242)
T d1oxxk2 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82 (242)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred EEEEEEEEEEECCCCEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEECCCHHHCCHHHC
T ss_conf 89997579998899989980407898799899999899980999999997586888745999999951373111531204
Q ss_pred CCEEECCCCCCCCC-CHHHHCCC-CC--CCC----HHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 43898156767877-57770499-98--999----999999999839967897100886521226999889039999999
Q 000452 1324 RLSIIPQDPVMFEG-TVRSNVDP-LE--EYT----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCL 1395 (1495)
Q Consensus 1324 ~i~iIpQdp~LF~G-TIR~NLdp-~~--~~s----D~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nlS~GQrQll~L 1395 (1495)
++++|||+|.||+. |+++|+.. .. ..+ ++.+.++++.+++.+.....|. .||||||||++|
T Consensus 83 ~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~-----------~LSGGqkQRvai 151 (242)
T d1oxxk2 83 KIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPR-----------ELSGAQQQRVAL 151 (242)
T ss_dssp CEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGG-----------GSCHHHHHHHHH
T ss_pred CCEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHCCHH-----------HCCHHHHHHHHH
T ss_conf 514773043346666577776655676137999999999999866591766648954-----------599999858998
Q ss_pred HHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEECCCHHHHC-CCEEEEEECCEEEEECCHHHHHHC
Q ss_conf 9987259986998758889999989999999998569--9279987059022301-398999938489985492478612
Q 000452 1396 GRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLEN 1472 (1495)
Q Consensus 1396 ARALLk~~~ILiLDEaTsslD~~Te~~Iq~~Ir~~f~--~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~g~p~~Ll~~ 1472 (1495)
||||..+|+||++|||||++|+.+...+++.|++..+ +.|+|+|+|+++.+.. ||||++|++|+|+|.|+|+++.++
T Consensus 152 ARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~~ 231 (242)
T d1oxxk2 152 ARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN 231 (242)
T ss_dssp HHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHC
T ss_conf 75776046614544786679989988998999999863598799997999999996999999989999998699999868
Q ss_pred CCCHHH
Q ss_conf 997689
Q 000452 1473 KSSSFS 1478 (1495)
Q Consensus 1473 ~~s~f~ 1478 (1495)
+...|.
T Consensus 232 P~~~~~ 237 (242)
T d1oxxk2 232 PVSIQV 237 (242)
T ss_dssp CSSHHH
T ss_pred CCCHHH
T ss_conf 999799
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=6.9e-41 Score=354.43 Aligned_cols=219 Identities=20% Similarity=0.344 Sum_probs=193.1
Q ss_pred EEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHH----HH
Q ss_conf 18974106785899994100016885089399999699989889999983356698637999697389999777----72
Q 000452 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHD----LR 1322 (1495)
Q Consensus 1247 ~I~~~nv~~~Y~~~~~~vL~~is~~i~~GekigIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~----LR 1322 (1495)
.|+++||+.+|.. ..+|+||||++++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+...+... .|
T Consensus 3 ~i~v~nl~k~yg~--~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~ 80 (240)
T d1g2912 3 GVRLVDVWKVFGE--VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKD 80 (240)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGG
T ss_pred CEEEEEEEEEECC--EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEECCCCHHHHCCCCC
T ss_conf 1899869999899--99985606688699899999999980999999996487889898999999803566444245322
Q ss_pred CCCEEECCCCCCCCC-CHHHHCCCC---CCCC----HHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 243898156767877-577704999---8999----99999999983996789710088652122699988903999999
Q 000452 1323 TRLSIIPQDPVMFEG-TVRSNVDPL---EEYT----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVC 1394 (1495)
Q Consensus 1323 ~~i~iIpQdp~LF~G-TIR~NLdp~---~~~s----D~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nlS~GQrQll~ 1394 (1495)
++++++||+|.||+. |+++|+... ...+ ++++.++++.+++.+.....| ..||||||||++
T Consensus 81 r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p-----------~~LSGGqkQRv~ 149 (240)
T d1g2912 81 RDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKP-----------RELSGGQRQRVA 149 (240)
T ss_dssp SSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCG-----------GGSCHHHHHHHH
T ss_pred CCCEECCCCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCH-----------HHCCHHHHHHHH
T ss_conf 551200221222310116676330687729998999999999998759966762993-----------349999999999
Q ss_pred HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEECCCHHHHC-CCEEEEEECCEEEEECCHHHHHH
Q ss_conf 99987259986998758889999989999999998569--9279987059022301-39899993848998549247861
Q 000452 1395 LGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLE 1471 (1495)
Q Consensus 1395 LARALLk~~~ILiLDEaTsslD~~Te~~Iq~~Ir~~f~--~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~g~p~~Ll~ 1471 (1495)
|||||..+|+||+|||||+++|+.+...|++.|++..+ +.|+|+|+|+++.+.. ||||++|++|+|+|.|+|+++++
T Consensus 150 IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~~ 229 (240)
T d1g2912 150 LGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYD 229 (240)
T ss_dssp HHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 99998269988982588765698999899999999986369889999599999999699999998999999859999982
Q ss_pred CCCCHHH
Q ss_conf 2997689
Q 000452 1472 NKSSSFS 1478 (1495)
Q Consensus 1472 ~~~s~f~ 1478 (1495)
++...|-
T Consensus 230 ~P~~~~~ 236 (240)
T d1g2912 230 KPANTFV 236 (240)
T ss_dssp SCSBHHH
T ss_pred CCCCHHH
T ss_conf 8999898
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=7.5e-41 Score=354.12 Aligned_cols=219 Identities=27% Similarity=0.415 Sum_probs=193.2
Q ss_pred EEEEEEEEEECCCCC--CCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHH---HH
Q ss_conf 897410678589999--4100016885089399999699989889999983356698637999697389999777---72
Q 000452 1248 IDLRDLQVRYAPHMP--FVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHD---LR 1322 (1495)
Q Consensus 1248 I~~~nv~~~Y~~~~~--~vL~~is~~i~~GekigIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~---LR 1322 (1495)
|+++|++..|..+.. .||+||||+|++||.+||+|+||||||||+++|.|+.+|++|+|.+||.|+...+.++ +|
T Consensus 2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (240)
T d3dhwc1 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR 81 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEECCEEEEECCHHHHHHHH
T ss_conf 79982799969998148986150578869979999899989888999987588636677328867685208755511554
Q ss_pred CCCEEECCCCCCCCC-CHHHHCCC----CC---CCCHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 243898156767877-57770499----98---99999999999983996789710088652122699988903999999
Q 000452 1323 TRLSIIPQDPVMFEG-TVRSNVDP----LE---EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVC 1394 (1495)
Q Consensus 1323 ~~i~iIpQdp~LF~G-TIR~NLdp----~~---~~sD~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nlS~GQrQll~ 1394 (1495)
+++++|||+|-+|+. |+++|+.. .+ +..++++.++|++++|.+.....| ..||||||||++
T Consensus 82 r~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~-----------~~LSGG~~QRva 150 (240)
T d3dhwc1 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYP-----------SNLSGGQKQRVA 150 (240)
T ss_dssp HHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCB-----------SCCCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHCCH-----------HHCCHHHHHHHH
T ss_conf 166430225222799649999999999849998999999999999769903554894-----------349999998999
Q ss_pred HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEECCCHHHHC-CCEEEEEECCEEEEECCHHHHHH
Q ss_conf 99987259986998758889999989999999998569--9279987059022301-39899993848998549247861
Q 000452 1395 LGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLE 1471 (1495)
Q Consensus 1395 LARALLk~~~ILiLDEaTsslD~~Te~~Iq~~Ir~~f~--~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~g~p~~Ll~ 1471 (1495)
|||||..+|++|++||||+++|+.+...|++.|++..+ +.|+|+|+|++..+.. ||||++|++|+|+|.|+|+++++
T Consensus 151 iAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~~ 230 (240)
T d3dhwc1 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230 (240)
T ss_dssp HHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTTC
T ss_pred HHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 86401058986874465565898885679999999986469789998389999998699999997999999879999972
Q ss_pred CCCCHH
Q ss_conf 299768
Q 000452 1472 NKSSSF 1477 (1495)
Q Consensus 1472 ~~~s~f 1477 (1495)
++...|
T Consensus 231 ~P~~~~ 236 (240)
T d3dhwc1 231 HPKTPL 236 (240)
T ss_dssp SSCCTT
T ss_pred CCCCHH
T ss_conf 899857
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=4.3e-40 Score=347.76 Aligned_cols=223 Identities=28% Similarity=0.406 Sum_probs=193.9
Q ss_pred EEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCH--------
Q ss_conf 189741067858999941000168850893999996999898899999833566986379996973899997--------
Q 000452 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGL-------- 1318 (1495)
Q Consensus 1247 ~I~~~nv~~~Y~~~~~~vL~~is~~i~~GekigIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l-------- 1318 (1495)
.|+++|++.+|.. ..||+||||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+...+.
T Consensus 2 ~Lev~nl~k~yg~--~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ 79 (258)
T d1b0ua_ 2 KLHVIDLHKRYGG--HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVA 79 (258)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEES
T ss_pred EEEEEEEEEEECC--EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEEECCCCCCCHHCCCC
T ss_conf 6999978999899--99881506688699799999899982999999997476678997799999933677520000235
Q ss_pred -----HHHHCCCEEECCCCCCCCC-CHHHHCCC----CCCCC----HHHHHHHHHHCCCCHHHHH-CCCCCCCCCCCCCC
Q ss_conf -----7772243898156767877-57770499----98999----9999999998399678971-00886521226999
Q 000452 1319 -----HDLRTRLSIIPQDPVMFEG-TVRSNVDP----LEEYT----DEQIWEALDKCQLGDEVRK-KEGKLDSKVTENGE 1383 (1495)
Q Consensus 1319 -----~~LR~~i~iIpQdp~LF~G-TIR~NLdp----~~~~s----D~eI~~aL~~~~L~~~i~~-lp~gLdt~v~e~G~ 1383 (1495)
..+|+++++|||+|-+|+. |+++|+.. ....+ ++.+.++++++++.+.... .| .
T Consensus 80 ~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p-----------~ 148 (258)
T d1b0ua_ 80 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYP-----------V 148 (258)
T ss_dssp CHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCG-----------G
T ss_pred CHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHCCCC-----------C
T ss_conf 17679997454489983323141101021365657876299989999999999998299524430682-----------2
Q ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCCHHHHC-CCEEEEEECCEEE
Q ss_conf 889039999999998725998699875888999998999999999856-99279987059022301-3989999384899
Q 000452 1384 NWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGLIE 1461 (1495)
Q Consensus 1384 nlS~GQrQll~LARALLk~~~ILiLDEaTsslD~~Te~~Iq~~Ir~~f-~~~TvI~IAHRl~ti~~-~DrIlVLd~G~Iv 1461 (1495)
.|||||+||++|||||..+|++|++||||+++|+.+...|.+.|++.. +++|+|+|+|++..+.. ||||+||++|+|+
T Consensus 149 ~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv 228 (258)
T d1b0ua_ 149 HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 228 (258)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHCCEEEEEECCEEE
T ss_conf 05677888989999984399878852455568878888998765541036883389948999999869999999799999
Q ss_pred EECCHHHHHHCCCCHHH-HHHH
Q ss_conf 85492478612997689-9999
Q 000452 1462 EYDSPRKLLENKSSSFS-QLVA 1482 (1495)
Q Consensus 1462 E~g~p~~Ll~~~~s~f~-~lv~ 1482 (1495)
|.|+|+++++++...|. +++.
T Consensus 229 ~~g~~~ev~~~P~~~~~~~ll~ 250 (258)
T d1b0ua_ 229 EEGDPEQVFGNPQSPRLQQFLK 250 (258)
T ss_dssp EEECHHHHHHSCCSHHHHHHHH
T ss_pred EECCHHHHHHCCCCHHHHHHHH
T ss_conf 9849999983899999999881
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=3.3e-40 Score=348.72 Aligned_cols=209 Identities=24% Similarity=0.374 Sum_probs=181.6
Q ss_pred EEEEEEEEEECCCCC--CCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHH----
Q ss_conf 897410678589999--41000168850893999996999898899999833566986379996973899997777----
Q 000452 1248 IDLRDLQVRYAPHMP--FVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDL---- 1321 (1495)
Q Consensus 1248 I~~~nv~~~Y~~~~~--~vL~~is~~i~~GekigIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~L---- 1321 (1495)
|+++||+++|..+.. .+|+||||+|++||.+||+|+||||||||++++.|+.+|++|+|.+||.|+..++..++
T Consensus 2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (230)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCEEEECCEECCCCCHHHCCHHH
T ss_conf 89990799948998208987133778849979999889999821655750688777766269999985768855512312
Q ss_pred HCCCEEECCCCCCCCC-CHHHHCCC------CCCCCH----HHHHHHHHHCCCCHH-HHHCCCCCCCCCCCCCCCCCCHH
Q ss_conf 2243898156767877-57770499------989999----999999998399678-97100886521226999889039
Q 000452 1322 RTRLSIIPQDPVMFEG-TVRSNVDP------LEEYTD----EQIWEALDKCQLGDE-VRKKEGKLDSKVTENGENWSMGQ 1389 (1495)
Q Consensus 1322 R~~i~iIpQdp~LF~G-TIR~NLdp------~~~~sD----~eI~~aL~~~~L~~~-i~~lp~gLdt~v~e~G~nlS~GQ 1389 (1495)
|+++++|||+|.+|+. |+++|+.. ....+. +++.+.|+.++|.+. ....| .+|||||
T Consensus 82 ~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p-----------~~LSGGq 150 (230)
T d1l2ta_ 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKP-----------NQLSGGQ 150 (230)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCG-----------GGSCHHH
T ss_pred CCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHHCCCH-----------HHCCHHH
T ss_conf 55577880412417686688877578887224789999999999998876242345534880-----------2389999
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCCHHHHCCCEEEEEECCEEEEECCHH
Q ss_conf 999999998725998699875888999998999999999856--992799870590223013989999384899854924
Q 000452 1390 RQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHF--SDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPR 1467 (1495)
Q Consensus 1390 rQll~LARALLk~~~ILiLDEaTsslD~~Te~~Iq~~Ir~~f--~~~TvI~IAHRl~ti~~~DrIlVLd~G~IvE~g~p~ 1467 (1495)
|||++|||||..+|+||+||||||+||+.+...|++.|++.. .++|+|+|+|+++.+..||||++|++|+|+|.|++.
T Consensus 151 kQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~~r 230 (230)
T d1l2ta_ 151 QQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLR 230 (230)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCCC
T ss_conf 99999875652278889946876546989999999999999984399999987888999869989999899999952579
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=2e-38 Score=333.81 Aligned_cols=213 Identities=24% Similarity=0.306 Sum_probs=183.2
Q ss_pred EEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCC-C
Q ss_conf 189741067858999941000168850893999996999898899999833566986379996973899997777224-3
Q 000452 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTR-L 1325 (1495)
Q Consensus 1247 ~I~~~nv~~~Y~~~~~~vL~~is~~i~~GekigIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~-i 1325 (1495)
-++++|++.+|.. ..||+||||++++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+...+.++.+++ +
T Consensus 4 iL~v~nlsk~yg~--~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi 81 (254)
T d1g6ha_ 4 ILRTENIVKYFGE--FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 81 (254)
T ss_dssp EEEEEEEEEEETT--EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTE
T ss_pred EEEEEEEEEEECC--EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCHHHHHHHHHCC
T ss_conf 6999778999799--68871217998899799999999984999999997797688737999999664056999998338
Q ss_pred EEECCCCCCCCC-CHHHHCCCCC----------------CCCH----HHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCC
Q ss_conf 898156767877-5777049998----------------9999----999999998399678971008865212269998
Q 000452 1326 SIIPQDPVMFEG-TVRSNVDPLE----------------EYTD----EQIWEALDKCQLGDEVRKKEGKLDSKVTENGEN 1384 (1495)
Q Consensus 1326 ~iIpQdp~LF~G-TIR~NLdp~~----------------~~sD----~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~n 1384 (1495)
+++||+|.+|.. |+++|+-... ...+ ++..++++..++.+. .|.. ..+
T Consensus 82 ~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~----~~~ 150 (254)
T d1g6ha_ 82 VRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHL-------YDRK----AGE 150 (254)
T ss_dssp EECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGG-------TTSB----GGG
T ss_pred CCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHH-------CCCC----HHH
T ss_conf 72577642478874232143013330345045665421353289999999999876196302-------0595----356
Q ss_pred CCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCCHHHHC-CCEEEEEECCEEEE
Q ss_conf 89039999999998725998699875888999998999999999856-99279987059022301-39899993848998
Q 000452 1385 WSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGLIEE 1462 (1495)
Q Consensus 1385 lS~GQrQll~LARALLk~~~ILiLDEaTsslD~~Te~~Iq~~Ir~~f-~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE 1462 (1495)
||||||||++|||||..+|++|+|||||++||+.+...|.+.|++.. +++|+|+|+|+++.+.. ||||+||++|+|++
T Consensus 151 LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~ 230 (254)
T d1g6ha_ 151 LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIA 230 (254)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEE
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEE
T ss_conf 99188889999999975927232439765699999999999999999789989999476999998699999996998999
Q ss_pred ECCHHHHHHC
Q ss_conf 5492478612
Q 000452 1463 YDSPRKLLEN 1472 (1495)
Q Consensus 1463 ~g~p~~Ll~~ 1472 (1495)
.|+|+|+.++
T Consensus 231 ~g~~~e~~~~ 240 (254)
T d1g6ha_ 231 EGRGEEEIKN 240 (254)
T ss_dssp EEESHHHHHH
T ss_pred EECHHHHHHC
T ss_conf 9668998654
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=5.7e-38 Score=329.99 Aligned_cols=215 Identities=21% Similarity=0.376 Sum_probs=187.2
Q ss_pred CEEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCC
Q ss_conf 21897410678589999410001688508939999969998988999998335669863799969738999977772243
Q 000452 1246 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRL 1325 (1495)
Q Consensus 1246 g~I~~~nv~~~Y~~~~~~vL~~is~~i~~GekigIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i 1325 (1495)
|.|+++|++.+|.. ..||+|+||++++||.+||+|++|||||||+++|.|+++|++|+|.++|.|+.+. .+++|+++
T Consensus 1 gaI~v~nl~k~yg~--~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~-~~~~~~~i 77 (238)
T d1vpla_ 1 GAVVVKDLRKRIGK--KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEE-PHEVRKLI 77 (238)
T ss_dssp CCEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTC-HHHHHTTE
T ss_pred CCEEEEEEEEEECC--EEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCC-HHHHHHHE
T ss_conf 97899958999999--9998062568848979999999999999999999669887888799986724468-39887218
Q ss_pred EEECCCCCCCCC-CHHHHCCCC---CCCCHHH----HHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 898156767877-577704999---8999999----99999983996789710088652122699988903999999999
Q 000452 1326 SIIPQDPVMFEG-TVRSNVDPL---EEYTDEQ----IWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGR 1397 (1495)
Q Consensus 1326 ~iIpQdp~LF~G-TIR~NLdp~---~~~sD~e----I~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nlS~GQrQll~LAR 1397 (1495)
+++||++.+|.. |+++|+... ...++++ +.++++.+++.+.... .-.+||+|||||++|||
T Consensus 78 ~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~lSgG~~qrv~iA~ 146 (238)
T d1vpla_ 78 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKD-----------RVSTYSKGMVRKLLIAR 146 (238)
T ss_dssp EEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGS-----------BGGGCCHHHHHHHHHHH
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHH-----------HHHHCCHHHHHHHHHHH
T ss_conf 6750015468786677888989986179989999999999986797888850-----------45337998989999999
Q ss_pred HHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCCHHHHC-CCEEEEEECCEEEEECCHHHHHHCCC
Q ss_conf 8725998699875888999998999999999856-99279987059022301-39899993848998549247861299
Q 000452 1398 VLLKRRKILMLDEATASVDTATDNLIQQSLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLENKS 1474 (1495)
Q Consensus 1398 ALLk~~~ILiLDEaTsslD~~Te~~Iq~~Ir~~f-~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~g~p~~Ll~~~~ 1474 (1495)
||+.+|+||+|||||+++|+.+...|++.|++.. .+.|+|+++|+++.+.. ||||++|++|+|++.|+|+++.++..
T Consensus 147 al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~~~ 225 (238)
T d1vpla_ 147 ALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYK 225 (238)
T ss_dssp HHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHHTT
T ss_pred HHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCC
T ss_conf 9865999887337988979899999999999999659989999598999999699999998999999928999986528
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=3.8e-38 Score=331.40 Aligned_cols=220 Identities=21% Similarity=0.368 Sum_probs=182.9
Q ss_pred CEEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHC-C
Q ss_conf 218974106785899994100016885089399999699989889999983356698637999697389999777722-4
Q 000452 1246 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRT-R 1324 (1495)
Q Consensus 1246 g~I~~~nv~~~Y~~~~~~vL~~is~~i~~GekigIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~-~ 1324 (1495)
--++++|++.+|.. ..+|+||||++++||.+||+|++|||||||+++|+|+++|++|+|.+||.|+...+.+..++ .
T Consensus 5 ~~Lev~~l~k~yg~--~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~g 82 (240)
T d1ji0a_ 5 IVLEVQSLHVYYGA--IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred EEEEEEEEEEEECC--EEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHC
T ss_conf 07999618999899--8888302578889979999999998599999999678888803898424434466088888742
Q ss_pred CEEECCCCCCCCC-CHHHHCCCC--CCCCHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 3898156767877-577704999--8999999999999839967897100886521226999889039999999998725
Q 000452 1325 LSIIPQDPVMFEG-TVRSNVDPL--EEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLK 1401 (1495)
Q Consensus 1325 i~iIpQdp~LF~G-TIR~NLdp~--~~~sD~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nlS~GQrQll~LARALLk 1401 (1495)
++++||++.+|+. |+++|+... .....+++.+.++..- +....+.+..+. ...+||||||||++|||||..
T Consensus 83 i~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~----~~~~LSGG~~Qrv~iAraL~~ 156 (240)
T d1ji0a_ 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIF--SLFPRLKERLKQ----LGGTLSGGEQQMLAIGRALMS 156 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHH--HHCHHHHTTTTS----BSSSSCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH--HHHHCHHHHHHC----CHHHCCHHHHHHHHHHHHHHH
T ss_conf 35567655457763699999988873278889999999999--874176888758----543389999999999999982
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCCHHHHC-CCEEEEEECCEEEEECCHHHHHHCC
Q ss_conf 998699875888999998999999999856-99279987059022301-3989999384899854924786129
Q 000452 1402 RRKILMLDEATASVDTATDNLIQQSLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLENK 1473 (1495)
Q Consensus 1402 ~~~ILiLDEaTsslD~~Te~~Iq~~Ir~~f-~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~g~p~~Ll~~~ 1473 (1495)
+|++|+|||||+++|+.+...|.+.|++.. +++|+|+|+|++..+.. ||||+||++|+|++.|+|+++++++
T Consensus 157 ~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~~ 230 (240)
T d1ji0a_ 157 RPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDNE 230 (240)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTCH
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCCH
T ss_conf 99874003988679999999999999999968998999958899999969999999899999984899984298
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=2.2e-37 Score=325.02 Aligned_cols=216 Identities=25% Similarity=0.430 Sum_probs=183.1
Q ss_pred EEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEE
Q ss_conf 89741067858999941000168850893999996999898899999833566986379996973899997777224389
Q 000452 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSI 1327 (1495)
Q Consensus 1248 I~~~nv~~~Y~~~~~~vL~~is~~i~~GekigIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1327 (1495)
+++ ++.-+|..- .+ ||||+++ +|.+||+|++|||||||+++|.|+.+|++|+|.++|.|+..++.. |+++++
T Consensus 3 l~v-~~~k~~g~~---~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~--~r~ig~ 74 (240)
T d2onka1 3 LKV-RAEKRLGNF---RL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGF 74 (240)
T ss_dssp EEE-EEEEEETTE---EE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTT--TSCCBC
T ss_pred EEE-EEEEEECCE---EE-EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHH--HCCCEE
T ss_conf 999-999998999---99-9999749-979999979998099999999739998962899999998869989--928522
Q ss_pred ECCCCCCCCC-CHHHHCCC-CCCCC----HHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 8156767877-57770499-98999----999999999839967897100886521226999889039999999998725
Q 000452 1328 IPQDPVMFEG-TVRSNVDP-LEEYT----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLK 1401 (1495)
Q Consensus 1328 IpQdp~LF~G-TIR~NLdp-~~~~s----D~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nlS~GQrQll~LARALLk 1401 (1495)
+||+|.+|+. |+++|+.. ....+ ++.+.++++++++.++....| ..||||||||++|||||+.
T Consensus 75 v~Q~~~l~~~ltV~enl~~~l~~~~~~~~~~~v~~~l~~~gl~~~~~~~~-----------~~LSGG~kQRvaiAral~~ 143 (240)
T d2onka1 75 VPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKP-----------ARLSGGERQRVALARALVI 143 (240)
T ss_dssp CCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCG-----------GGSCHHHHHHHHHHHHHTT
T ss_pred ECCCHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCH-----------HHCCHHHHHHHHHHHHHHC
T ss_conf 52314435220155766653233677889999999998638375665794-----------4489999899999877751
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEECCCHHHHC-CCEEEEEECCEEEEECCHHHHHHCCCCHHH
Q ss_conf 9986998758889999989999999998569--9279987059022301-398999938489985492478612997689
Q 000452 1402 RRKILMLDEATASVDTATDNLIQQSLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLENKSSSFS 1478 (1495)
Q Consensus 1402 ~~~ILiLDEaTsslD~~Te~~Iq~~Ir~~f~--~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~g~p~~Ll~~~~s~f~ 1478 (1495)
+|+||+||||||++|+.+...+++.|++..+ +.|+|+|+|.+..+.. ||||++|++|+++++|+|++++++++....
T Consensus 144 ~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~~~~~v~ 223 (240)
T d2onka1 144 QPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEVA 223 (240)
T ss_dssp CCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCCSSHH
T ss_pred CCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHCCCCHHHH
T ss_conf 67706752865558879999999999999874397699981899999996999999989999999069998329988999
Q ss_pred HHHH
Q ss_conf 9999
Q 000452 1479 QLVA 1482 (1495)
Q Consensus 1479 ~lv~ 1482 (1495)
+++.
T Consensus 224 ~fl~ 227 (240)
T d2onka1 224 EFLS 227 (240)
T ss_dssp HHGG
T ss_pred HHHC
T ss_conf 9857
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=1.3e-35 Score=310.08 Aligned_cols=201 Identities=25% Similarity=0.341 Sum_probs=174.0
Q ss_pred CEEEEEEEEEECCCCCCCCCCCCEEEEECCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEECCE-----------EEE
Q ss_conf 089983389835999999411311786288099998137863999999983798798758998494-----------799
Q 000452 617 AIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-----------KAY 685 (1495)
Q Consensus 617 ~I~i~~~~fsw~~~~~~~~L~~inl~i~~G~~vaIvG~~GSGKStLl~~ilGe~~~~~G~i~i~g~-----------~ay 685 (1495)
.|+++|.+++|+ +..+|+|+||++++||.++++||+|||||||+++|.|.++|++|+|.++|. ++|
T Consensus 6 ~I~v~nlsk~yg---~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~ 82 (239)
T d1v43a3 6 EVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISM 82 (239)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEE
T ss_pred EEEEEEEEEEEC---CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCCCCEEEE
T ss_conf 499987999999---99998130678879989999999998299999999758999878799916413547700015899
Q ss_pred ECCCCCCCC-CCHHHHHHCCCC---CCH----HHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 926775667-558899721998---999----999999998192888863478986401479886664799999999986
Q 000452 686 VAQSPWIQS-GKIEDNILFGKE---MDR----ERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARAL 757 (1495)
Q Consensus 686 v~Q~pwi~~-gTIreNIlfG~~---~d~----~~y~~vi~ac~L~~Dl~~lp~Gd~T~IGe~G~nLSGGQKqRIaLARAl 757 (1495)
|+|+|-++. .|++||+.|+.. +++ ++.+++++.+.|++.. ......||||||||++||||+
T Consensus 83 v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSGGq~QRvaiAraL 151 (239)
T d1v43a3 83 VFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELL-----------NRYPAQLSGGQRQRVAVARAI 151 (239)
T ss_dssp EEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGT-----------TSCTTTCCSSCHHHHHHHHHH
T ss_pred EEECHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHH-----------CCCHHHCCHHHHHHHHHHHHH
T ss_conf 800335342220999999999873999999999999999875985566-----------099546999998899997664
Q ss_pred CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHH-H-CCCEEEEEECCCCCCC-CCCEEEEEECCEEEEECCHHHHHHCC
Q ss_conf 03997867428677669888999999999887-5-8977999805777423-58789999299799904867897129
Q 000452 758 YQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL-L-NSKTVLYVTHQVEFLP-AADLVLVIKDGKITQAGKYTDVINSG 832 (1495)
Q Consensus 758 y~~adI~LLDDp~SalD~~t~~~if~~~i~~~-l-~~kTvIlvTH~~~~l~-~aD~Iivl~~G~I~~~G~~~~L~~~~ 832 (1495)
..+|+|+|||||||+||+.+...+.+ .+..+ . .++|+|+|||+++... .||+|++|++|+|++.|+.+++..+.
T Consensus 152 ~~~P~iLllDEPts~LD~~~~~~i~~-ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P 228 (239)
T d1v43a3 152 VVEPDVLLMDEPLSNLDAKLRVAMRA-EIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRP 228 (239)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHH-HHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCC
T ss_pred CCCCCCEEECCCCCCCCHHHHHHHHH-HHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCC
T ss_conf 04998243068866689899989999-999998731980799948999999869999999899999985999998689
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=9.8e-36 Score=311.24 Aligned_cols=203 Identities=27% Similarity=0.367 Sum_probs=175.7
Q ss_pred CEEEEEEEEEECCCCCCCCCCCCEEEEECCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEECCE--------------
Q ss_conf 089983389835999999411311786288099998137863999999983798798758998494--------------
Q 000452 617 AIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------- 682 (1495)
Q Consensus 617 ~I~i~~~~fsw~~~~~~~~L~~inl~i~~G~~vaIvG~~GSGKStLl~~ilGe~~~~~G~i~i~g~-------------- 682 (1495)
.|+++|.+++|+.. +..+|+|+||++++||.++|+||+|||||||+++|.|..+|++|+|.++|.
T Consensus 3 ~i~v~nlsk~y~~g-~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~r 81 (242)
T d1oxxk2 3 RIIVKNVSKVFKKG-KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED 81 (242)
T ss_dssp CEEEEEEEEEEGGG-TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred EEEEEEEEEEECCC-CEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEECCCHHHCCHHH
T ss_conf 89997579998899-98998040789879989999989998099999999758688874599999995137311153120
Q ss_pred --EEEECCCCCCCCC-CHHHHHHCCCC---CCH----HHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf --7999267756675-58899721998---999----9999999981928888634789864014798866647999999
Q 000452 683 --KAYVAQSPWIQSG-KIEDNILFGKE---MDR----ERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQ 752 (1495)
Q Consensus 683 --~ayv~Q~pwi~~g-TIreNIlfG~~---~d~----~~y~~vi~ac~L~~Dl~~lp~Gd~T~IGe~G~nLSGGQKqRIa 752 (1495)
++||+|+|-++.. |++|||.|+.. .++ ++.+++++.+.|.+..+.. -..||||||||++
T Consensus 82 r~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~-----------p~~LSGGqkQRva 150 (242)
T d1oxxk2 82 RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHF-----------PRELSGAQQQRVA 150 (242)
T ss_dssp SCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSC-----------GGGSCHHHHHHHH
T ss_pred CCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHCC-----------HHHCCHHHHHHHH
T ss_conf 45147730433466665777766556761379999999999998665917666489-----------5459999985899
Q ss_pred HHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH--CCCEEEEEECCCCCC-CCCCEEEEEECCEEEEECCHHHHH
Q ss_conf 99986039978674286776698889999999998875--897799980577742-358789999299799904867897
Q 000452 753 IARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL--NSKTVLYVTHQVEFL-PAADLVLVIKDGKITQAGKYTDVI 829 (1495)
Q Consensus 753 LARAly~~adI~LLDDp~SalD~~t~~~if~~~i~~~l--~~kTvIlvTH~~~~l-~~aD~Iivl~~G~I~~~G~~~~L~ 829 (1495)
||||+..+|+++|+|||||+||+.+...+.+ .+..+. .+.|+|+|||+++.. ..||+|++|++|+|++.|+.+++.
T Consensus 151 iARaL~~~P~llllDEPt~~LD~~~~~~i~~-~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~ 229 (242)
T d1oxxk2 151 LARALVKDPSLLLLDEPFSNLDARMRDSARA-LVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLY 229 (242)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCGGGHHHHHH-HHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHCCCCEEECCCCCCCCHHHHHHHHH-HHHHHHHCCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHH
T ss_conf 8757760466145447866799899889989-999998635987999979999999969999999899999986999998
Q ss_pred HCC
Q ss_conf 129
Q 000452 830 NSG 832 (1495)
Q Consensus 830 ~~~ 832 (1495)
.+.
T Consensus 230 ~~P 232 (242)
T d1oxxk2 230 DNP 232 (242)
T ss_dssp HSC
T ss_pred HCC
T ss_conf 689
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6e-36 Score=313.03 Aligned_cols=199 Identities=31% Similarity=0.466 Sum_probs=173.9
Q ss_pred EEEEEEEEEECCCCCCCCCCCCEEEEECCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEECCE-----------EEEE
Q ss_conf 89983389835999999411311786288099998137863999999983798798758998494-----------7999
Q 000452 618 IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-----------KAYV 686 (1495)
Q Consensus 618 I~i~~~~fsw~~~~~~~~L~~inl~i~~G~~vaIvG~~GSGKStLl~~ilGe~~~~~G~i~i~g~-----------~ayv 686 (1495)
|+++|++++|+ +..+|+|+||++++||.++++||+|||||||+++|.|..++++|+|.++|. ++||
T Consensus 1 Iev~nv~k~yg---~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v 77 (232)
T d2awna2 1 VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMV 77 (232)
T ss_dssp EEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGGGTCEEEE
T ss_pred CEEEEEEEEEC---CEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHCEEEEE
T ss_conf 99999999989---999981117788699899999899982999999996587888888999999778886444322234
Q ss_pred CCCCCCCCC-CHHHHHHCCCCC---C----HHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 267756675-588997219989---9----99999999981928888634789864014798866647999999999860
Q 000452 687 AQSPWIQSG-KIEDNILFGKEM---D----RERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALY 758 (1495)
Q Consensus 687 ~Q~pwi~~g-TIreNIlfG~~~---d----~~~y~~vi~ac~L~~Dl~~lp~Gd~T~IGe~G~nLSGGQKqRIaLARAly 758 (1495)
+|+|-++.. |++|||.|+... + +++..++++...|.+..+. ...+||||||||++||||+.
T Consensus 78 ~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~-----------~~~~LSGGqkQRvaiAraL~ 146 (232)
T d2awna2 78 FQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDR-----------KPKALSGGQRQRVAIGRTLV 146 (232)
T ss_dssp CSSCCC---------------------CHHHHHHHHHHHHC--------------------------------CHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHC-----------CHHHCCHHHHHHHHHHHHHH
T ss_conf 3342026433378897899987599889999999999975788656648-----------96569999999999999970
Q ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHHH--HCCCEEEEEECCCCCCCC-CCEEEEEECCEEEEECCHHHHHHC
Q ss_conf 3997867428677669888999999999887--589779998057774235-878999929979990486789712
Q 000452 759 QDADIYLFDDPFSAVDAHTGSHLFKEVLLGL--LNSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYTDVINS 831 (1495)
Q Consensus 759 ~~adI~LLDDp~SalD~~t~~~if~~~i~~~--l~~kTvIlvTH~~~~l~~-aD~Iivl~~G~I~~~G~~~~L~~~ 831 (1495)
.+|++++||||||+||+.+...|.+. +..+ ..++|+|+|||+++.... ||+|++|++|+|++.|+.+|+++.
T Consensus 147 ~~P~illlDEPts~LD~~~~~~i~~~-l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~ 221 (232)
T d2awna2 147 AEPSVFLLDEPLSNLDAALRVQMRIE-ISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 221 (232)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHH-HHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHH-HHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHHC
T ss_conf 39988997588878898899899999-9999874298799994899999996999999979999998089999738
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=1.8e-35 Score=308.93 Aligned_cols=198 Identities=33% Similarity=0.460 Sum_probs=174.3
Q ss_pred EEEEEEEEEECCCCCCCCCCCCEEEEECCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEECCE-----------EEEE
Q ss_conf 89983389835999999411311786288099998137863999999983798798758998494-----------7999
Q 000452 618 IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-----------KAYV 686 (1495)
Q Consensus 618 I~i~~~~fsw~~~~~~~~L~~inl~i~~G~~vaIvG~~GSGKStLl~~ilGe~~~~~G~i~i~g~-----------~ayv 686 (1495)
|+++|.+++|+ ..+|+|+||++++||.++++||+|||||||+++|.|.++|++|+|.++|. ++||
T Consensus 2 i~v~nlsk~y~----~~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~~r~ig~v 77 (229)
T d3d31a2 2 IEIESLSRKWK----NFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFV 77 (229)
T ss_dssp EEEEEEEEECS----SCEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEE
T ss_pred EEEEEEEEEEC----CEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHCCEEE
T ss_conf 89998999949----97884337898799899999899982999999996476888788999567346521657405615
Q ss_pred CCCCCCCC-CCHHHHHHCCCC----CCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 26775667-558899721998----9999999999981928888634789864014798866647999999999860399
Q 000452 687 AQSPWIQS-GKIEDNILFGKE----MDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDA 761 (1495)
Q Consensus 687 ~Q~pwi~~-gTIreNIlfG~~----~d~~~y~~vi~ac~L~~Dl~~lp~Gd~T~IGe~G~nLSGGQKqRIaLARAly~~a 761 (1495)
+|+|-++. .|++||+.|+.. -++++..++++...+.+..+ .....||||||||++||||+.++|
T Consensus 78 ~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSGG~~QRvaiAraL~~~P 146 (229)
T d3d31a2 78 YQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLD-----------RNPLTLSGGEQQRVALARALVTNP 146 (229)
T ss_dssp CTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTT-----------SCGGGSCHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHH-----------CCHHHCCHHHHCCHHHHHHHHCCC
T ss_conf 121111746657788888776405538999999999825655575-----------895547999840140304344367
Q ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHHH-H-CCCEEEEEECCCCCCC-CCCEEEEEECCEEEEECCHHHHHHC
Q ss_conf 7867428677669888999999999887-5-8977999805777423-5878999929979990486789712
Q 000452 762 DIYLFDDPFSAVDAHTGSHLFKEVLLGL-L-NSKTVLYVTHQVEFLP-AADLVLVIKDGKITQAGKYTDVINS 831 (1495)
Q Consensus 762 dI~LLDDp~SalD~~t~~~if~~~i~~~-l-~~kTvIlvTH~~~~l~-~aD~Iivl~~G~I~~~G~~~~L~~~ 831 (1495)
+++|||||||+||+++...+.+ .+..+ . .+.|+|+|||+++... .||+|++|++|+|++.|+.+|++++
T Consensus 147 ~iLllDEPts~LD~~~~~~i~~-~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~ 218 (229)
T d3d31a2 147 KILLLDEPLSALDPRTQENARE-MLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK 218 (229)
T ss_dssp SEEEEESSSTTSCHHHHHHHHH-HHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSS
T ss_pred CCEEECCCCCCCCHHHHHHHHH-HHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHC
T ss_conf 7144347876799899999999-99999864796899974999999996999999979999998699999868
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=2.3e-35 Score=308.20 Aligned_cols=201 Identities=26% Similarity=0.384 Sum_probs=173.8
Q ss_pred CEEEEEEEEEECCCCCCCCCCCCEEEEECCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEECC---------------
Q ss_conf 08998338983599999941131178628809999813786399999998379879875899849---------------
Q 000452 617 AIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG--------------- 681 (1495)
Q Consensus 617 ~I~i~~~~fsw~~~~~~~~L~~inl~i~~G~~vaIvG~~GSGKStLl~~ilGe~~~~~G~i~i~g--------------- 681 (1495)
.|+++|.+++|+ +..+|+|+||++++||.++++||+|||||||+++|.|.++|++|+|.++|
T Consensus 3 ~i~v~nl~k~yg---~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~ 79 (240)
T d1g2912 3 GVRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK 79 (240)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG
T ss_pred CEEEEEEEEEEC---CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEECCCCHHHHCCCC
T ss_conf 189986999989---99998560668869989999999998099999999648788989899999980356644424532
Q ss_pred --EEEEECCCCCCCCC-CHHHHHHCCC---CCCH----HHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf --47999267756675-5889972199---8999----999999998192888863478986401479886664799999
Q 000452 682 --TKAYVAQSPWIQSG-KIEDNILFGK---EMDR----ERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRI 751 (1495)
Q Consensus 682 --~~ayv~Q~pwi~~g-TIreNIlfG~---~~d~----~~y~~vi~ac~L~~Dl~~lp~Gd~T~IGe~G~nLSGGQKqRI 751 (1495)
.++||+|+|-++.. |++|||.|+. ..+. ++.+++++.+.|.+..+ .....||||||||+
T Consensus 80 ~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~-----------~~p~~LSGGqkQRv 148 (240)
T d1g2912 80 DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLN-----------RKPRELSGGQRQRV 148 (240)
T ss_dssp GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTT-----------CCGGGSCHHHHHHH
T ss_pred CCCCEECCCCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHC-----------CCHHHCCHHHHHHH
T ss_conf 2551200221222310116676330687729998999999999998759966762-----------99334999999999
Q ss_pred HHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH-C-CCEEEEEECCCCCCCC-CCEEEEEECCEEEEECCHHHH
Q ss_conf 999986039978674286776698889999999998875-8-9779998057774235-878999929979990486789
Q 000452 752 QIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL-N-SKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYTDV 828 (1495)
Q Consensus 752 aLARAly~~adI~LLDDp~SalD~~t~~~if~~~i~~~l-~-~kTvIlvTH~~~~l~~-aD~Iivl~~G~I~~~G~~~~L 828 (1495)
+||||+..+|+++||||||++||+.+...+.+ .+..+. + +.|+|+|||+++.... ||+|++|++|+|++.|+.+|+
T Consensus 149 ~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~-~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el 227 (240)
T d1g2912 149 ALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRA-ELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEV 227 (240)
T ss_dssp HHHHHHHTCCSEEEEECTTTTSCHHHHHHHHH-HHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHCCCCEEEECCCCCCCCHHHHHHHHH-HHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHH
T ss_conf 99999826998898258876569899989999-99999863698899995999999996999999989999998599999
Q ss_pred HHCC
Q ss_conf 7129
Q 000452 829 INSG 832 (1495)
Q Consensus 829 ~~~~ 832 (1495)
+.+.
T Consensus 228 ~~~P 231 (240)
T d1g2912 228 YDKP 231 (240)
T ss_dssp HHSC
T ss_pred HHCC
T ss_conf 8289
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.7e-35 Score=309.29 Aligned_cols=202 Identities=26% Similarity=0.399 Sum_probs=172.8
Q ss_pred EEEEEEEEEECCCCCC-CCCCCCEEEEECCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEECCE--------------
Q ss_conf 8998338983599999-9411311786288099998137863999999983798798758998494--------------
Q 000452 618 IEIADGNFSWDISSHN-PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------- 682 (1495)
Q Consensus 618 I~i~~~~fsw~~~~~~-~~L~~inl~i~~G~~vaIvG~~GSGKStLl~~ilGe~~~~~G~i~i~g~-------------- 682 (1495)
|+++|.+++|+.+... .+|+|+||++++||.++|+||+|||||||+++|.|..+|++|+|.++|.
T Consensus 2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (240)
T d3dhwc1 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR 81 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEECCEEEEECCHHHHHHHH
T ss_conf 79982799969998148986150578869979999899989888999987588636677328867685208755511554
Q ss_pred --EEEECCCCCCCCC-CHHHHHHCC-----CCCC--HHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf --7999267756675-588997219-----9899--99999999981928888634789864014798866647999999
Q 000452 683 --KAYVAQSPWIQSG-KIEDNILFG-----KEMD--RERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQ 752 (1495)
Q Consensus 683 --~ayv~Q~pwi~~g-TIreNIlfG-----~~~d--~~~y~~vi~ac~L~~Dl~~lp~Gd~T~IGe~G~nLSGGQKqRIa 752 (1495)
++||+|+|-++.. |++|||.|+ .+-+ +++..++++.+.|.+.. ......||||||||++
T Consensus 82 r~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~-----------~~~~~~LSGG~~QRva 150 (240)
T d3dhwc1 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKH-----------DSYPSNLSGGQKQRVA 150 (240)
T ss_dssp HHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTT-----------SSCBSCCCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHH-----------HCCHHHCCHHHHHHHH
T ss_conf 16643022522279964999999999984999899999999999976990355-----------4894349999998999
Q ss_pred HHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHH-HC-CCEEEEEECCCCCCCC-CCEEEEEECCEEEEECCHHHHH
Q ss_conf 9998603997867428677669888999999999887-58-9779998057774235-8789999299799904867897
Q 000452 753 IARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL-LN-SKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYTDVI 829 (1495)
Q Consensus 753 LARAly~~adI~LLDDp~SalD~~t~~~if~~~i~~~-l~-~kTvIlvTH~~~~l~~-aD~Iivl~~G~I~~~G~~~~L~ 829 (1495)
||||+..+|+++||||||++||+.+...+++. +..+ .+ ++|+|+|||+++.... ||+|++|++|+|++.|+.+|++
T Consensus 151 iAraL~~~P~lLllDEPt~~LD~~~~~~i~~~-l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~ 229 (240)
T d3dhwc1 151 IARALASNPKVLLCDEATSALDPATTRSILEL-LKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVF 229 (240)
T ss_dssp HHHHHHTCCSEEEEESGGGSSCHHHHHHHHHH-HHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTT
T ss_pred HHHHHCCCCCEEEECCCCCCCCHHHHHHHHHH-HHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHH
T ss_conf 86401058986874465565898885679999-99998646978999838999999869999999799999987999997
Q ss_pred HC
Q ss_conf 12
Q 000452 830 NS 831 (1495)
Q Consensus 830 ~~ 831 (1495)
++
T Consensus 230 ~~ 231 (240)
T d3dhwc1 230 SH 231 (240)
T ss_dssp CS
T ss_pred HC
T ss_conf 28
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=7.1e-35 Score=304.03 Aligned_cols=197 Identities=29% Similarity=0.418 Sum_probs=161.8
Q ss_pred EEEEEEEEEECCCCC-CCCCCCCEEEEECCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEECCE--------------
Q ss_conf 899833898359999-99411311786288099998137863999999983798798758998494--------------
Q 000452 618 IEIADGNFSWDISSH-NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------- 682 (1495)
Q Consensus 618 I~i~~~~fsw~~~~~-~~~L~~inl~i~~G~~vaIvG~~GSGKStLl~~ilGe~~~~~G~i~i~g~-------------- 682 (1495)
|+++|.+++|+.... ..+|+|+||++++||.++|+||+|||||||+++|.|..+|++|+|.++|.
T Consensus 2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (230)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCEEEECCEECCCCCHHHCCHHH
T ss_conf 89990799948998208987133778849979999889999821655750688777766269999985768855512312
Q ss_pred ---EEEECCCCCCCC-CCHHHHHHCCC------CCCH-HHHHHHH---HHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHH
Q ss_conf ---799926775667-55889972199------8999-9999999---98192888863478986401479886664799
Q 000452 683 ---KAYVAQSPWIQS-GKIEDNILFGK------EMDR-ERYNAVL---DACSLEKDLEILSFGDQTVVGERGINLSGGQK 748 (1495)
Q Consensus 683 ---~ayv~Q~pwi~~-gTIreNIlfG~------~~d~-~~y~~vi---~ac~L~~Dl~~lp~Gd~T~IGe~G~nLSGGQK 748 (1495)
++||+|+|-++. -|++||+.|+. .++. ++.+++. +...|.+.+ ....-.+||||||
T Consensus 82 ~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~----------~~~~p~~LSGGqk 151 (230)
T d1l2ta_ 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERF----------ANHKPNQLSGGQQ 151 (230)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGG----------TTCCGGGSCHHHH
T ss_pred CCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHH----------HCCCHHHCCHHHH
T ss_conf 555778804124176866888775788872247899999999999988762423455----------3488023899999
Q ss_pred HHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHH-H-CCCEEEEEECCCCCCCCCCEEEEEECCEEEEECCH
Q ss_conf 99999998603997867428677669888999999999887-5-89779998057774235878999929979990486
Q 000452 749 QRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL-L-NSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKY 825 (1495)
Q Consensus 749 qRIaLARAly~~adI~LLDDp~SalD~~t~~~if~~~i~~~-l-~~kTvIlvTH~~~~l~~aD~Iivl~~G~I~~~G~~ 825 (1495)
|||+||||+..+|+++|||||||+||+.+...+++ .+..+ . .++|+|+|||+++....||+|++|++|+|++.|+.
T Consensus 152 QRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~-~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 152 QRVAIARALANNPPIILADQPTGALDSKTGEKIMQ-LLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHH-HHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHH-HHHHHHHHHCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCC
T ss_conf 99998756522788899468765469899999999-9999998439999998788899986998999989999995257
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.3e-34 Score=301.91 Aligned_cols=201 Identities=28% Similarity=0.439 Sum_probs=173.9
Q ss_pred CEEEEEEEEEECCCCCCCCCCCCEEEEECCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEECCE--------------
Q ss_conf 089983389835999999411311786288099998137863999999983798798758998494--------------
Q 000452 617 AIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------- 682 (1495)
Q Consensus 617 ~I~i~~~~fsw~~~~~~~~L~~inl~i~~G~~vaIvG~~GSGKStLl~~ilGe~~~~~G~i~i~g~-------------- 682 (1495)
.++++|.+++|+ +..+|+|+||++++||.++|+|++|||||||+++|.|..++++|+|.++|.
T Consensus 2 ~Lev~nl~k~yg---~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 78 (258)
T d1b0ua_ 2 KLHVIDLHKRYG---GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 78 (258)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred EEEEEEEEEEEC---CEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEEECCCCCCCHHCCC
T ss_conf 699997899989---99988150668869979999989998299999999747667899779999993367752000023
Q ss_pred ------------EEEECCCCCCCC-CCHHHHHHCC----CCCC----HHHHHHHHHHHCCHHHHH-HCCCCCCCCCCCCC
Q ss_conf ------------799926775667-5588997219----9899----999999999819288886-34789864014798
Q 000452 683 ------------KAYVAQSPWIQS-GKIEDNILFG----KEMD----RERYNAVLDACSLEKDLE-ILSFGDQTVVGERG 740 (1495)
Q Consensus 683 ------------~ayv~Q~pwi~~-gTIreNIlfG----~~~d----~~~y~~vi~ac~L~~Dl~-~lp~Gd~T~IGe~G 740 (1495)
++||+|+|-++. .|+.|||.|+ ...+ .++..++++.+.|.+... ..|
T Consensus 79 ~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p----------- 147 (258)
T d1b0ua_ 79 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYP----------- 147 (258)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCG-----------
T ss_pred CCHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHCCCC-----------
T ss_conf 517679997454489983323141101021365657876299989999999999998299524430682-----------
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEECCCCCCCC-CCEEEEEECCE
Q ss_conf 8666479999999998603997867428677669888999999999887-589779998057774235-87899992997
Q 000452 741 INLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL-LNSKTVLYVTHQVEFLPA-ADLVLVIKDGK 818 (1495)
Q Consensus 741 ~nLSGGQKqRIaLARAly~~adI~LLDDp~SalD~~t~~~if~~~i~~~-l~~kTvIlvTH~~~~l~~-aD~Iivl~~G~ 818 (1495)
.+||||||||++||||+..+|++++|||||++||+.+...|++ .+..+ .+++|+|+|||+++.+.. ||+|++|++|+
T Consensus 148 ~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~-ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~ 226 (258)
T d1b0ua_ 148 VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLR-IMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGK 226 (258)
T ss_dssp GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHH-HHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTE
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHH-HHHHHCCCCCCEEEEECCHHHHHHHCCEEEEEECCE
T ss_conf 2056778889899999843998788524555688788889987-655410368833899489999998699999997999
Q ss_pred EEEECCHHHHHHCC
Q ss_conf 99904867897129
Q 000452 819 ITQAGKYTDVINSG 832 (1495)
Q Consensus 819 I~~~G~~~~L~~~~ 832 (1495)
|++.|+.+|++.+.
T Consensus 227 iv~~g~~~ev~~~P 240 (258)
T d1b0ua_ 227 IEEEGDPEQVFGNP 240 (258)
T ss_dssp EEEEECHHHHHHSC
T ss_pred EEEECCHHHHHHCC
T ss_conf 99984999998389
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.2e-33 Score=293.61 Aligned_cols=200 Identities=23% Similarity=0.365 Sum_probs=166.8
Q ss_pred CEEEEEEEEEECCCCCCCCCCCCEEEEECCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEECCE--------------
Q ss_conf 089983389835999999411311786288099998137863999999983798798758998494--------------
Q 000452 617 AIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------- 682 (1495)
Q Consensus 617 ~I~i~~~~fsw~~~~~~~~L~~inl~i~~G~~vaIvG~~GSGKStLl~~ilGe~~~~~G~i~i~g~-------------- 682 (1495)
.++++|.+.+|+ ...+|+|+||++++||.++++||+|||||||+++|.|.+++++|+|.++|.
T Consensus 4 iL~v~nlsk~yg---~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~g 80 (254)
T d1g6ha_ 4 ILRTENIVKYFG---EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 80 (254)
T ss_dssp EEEEEEEEEEET---TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred EEEEEEEEEEEC---CEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCHHHHHHHHHC
T ss_conf 699977899979---96887121799889979999999998499999999779768873799999966405699999833
Q ss_pred EEEECCCCCCC-CCCHHHHHHCCCC-----------------CCHHHHH---HHHHHHCCHHHHHHCCCCCCCCCCCCCC
Q ss_conf 79992677566-7558899721998-----------------9999999---9999819288886347898640147988
Q 000452 683 KAYVAQSPWIQ-SGKIEDNILFGKE-----------------MDRERYN---AVLDACSLEKDLEILSFGDQTVVGERGI 741 (1495)
Q Consensus 683 ~ayv~Q~pwi~-~gTIreNIlfG~~-----------------~d~~~y~---~vi~ac~L~~Dl~~lp~Gd~T~IGe~G~ 741 (1495)
++|++|+|-++ +.|+.|||.+|.. -+++..+ ++++...+.. .......
T Consensus 81 i~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~ 149 (254)
T d1g6ha_ 81 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSH-----------LYDRKAG 149 (254)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGG-----------GTTSBGG
T ss_pred CCCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCH-----------HCCCCHH
T ss_conf 87257764247887423214301333034504566542135328999999999987619630-----------2059535
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEECCCCCC-CCCCEEEEEECCEE
Q ss_conf 666479999999998603997867428677669888999999999887-5897799980577742-35878999929979
Q 000452 742 NLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL-LNSKTVLYVTHQVEFL-PAADLVLVIKDGKI 819 (1495)
Q Consensus 742 nLSGGQKqRIaLARAly~~adI~LLDDp~SalD~~t~~~if~~~i~~~-l~~kTvIlvTH~~~~l-~~aD~Iivl~~G~I 819 (1495)
+||||||||+++|||+.++|+++|||||+++||+.....+++. +..+ -+|+|+|++||+++.+ ..||+|++|++|+|
T Consensus 150 ~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~-i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~i 228 (254)
T d1g6ha_ 150 ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNH-VLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQI 228 (254)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHH-HHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEE
T ss_pred HCCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHH-HHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEE
T ss_conf 6991888899999999759272324397656999999999999-999997899899994769999986999999969989
Q ss_pred EEECCHHHHHHC
Q ss_conf 990486789712
Q 000452 820 TQAGKYTDVINS 831 (1495)
Q Consensus 820 ~~~G~~~~L~~~ 831 (1495)
+..|+.+|+.+.
T Consensus 229 v~~g~~~e~~~~ 240 (254)
T d1g6ha_ 229 IAEGRGEEEIKN 240 (254)
T ss_dssp EEEEESHHHHHH
T ss_pred EEEECHHHHHHC
T ss_conf 999668998654
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=3.7e-33 Score=289.67 Aligned_cols=206 Identities=26% Similarity=0.389 Sum_probs=169.2
Q ss_pred CCCEEEEEEEEEECCCCCCCCCCCCEEEEECCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEECCE------------
Q ss_conf 64089983389835999999411311786288099998137863999999983798798758998494------------
Q 000452 615 ETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------ 682 (1495)
Q Consensus 615 ~~~I~i~~~~fsw~~~~~~~~L~~inl~i~~G~~vaIvG~~GSGKStLl~~ilGe~~~~~G~i~i~g~------------ 682 (1495)
+..++++|.+++|+ ...+|+|+||++++||.++++||+|||||||+++|.|.+++++|+|.++|.
T Consensus 4 d~~Lev~~l~k~yg---~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r 80 (240)
T d1ji0a_ 4 DIVLEVQSLHVYYG---AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINR 80 (240)
T ss_dssp SEEEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHH
T ss_pred CEEEEEEEEEEEEC---CEEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHH
T ss_conf 60799961899989---988883025788899799999999985999999996788888038984244344660888887
Q ss_pred --EEEECCCCCCCCC-CHHHHHHCCCC--CCHHHHHHHHH-HHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf --7999267756675-58899721998--99999999999-819288886347898640147988666479999999998
Q 000452 683 --KAYVAQSPWIQSG-KIEDNILFGKE--MDRERYNAVLD-ACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARA 756 (1495)
Q Consensus 683 --~ayv~Q~pwi~~g-TIreNIlfG~~--~d~~~y~~vi~-ac~L~~Dl~~lp~Gd~T~IGe~G~nLSGGQKqRIaLARA 756 (1495)
++|++|++-++.. |++||+.++.. .+.+..++.++ ...+...++. .......+||||||||+++|||
T Consensus 81 ~gi~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~~LSGG~~Qrv~iAra 153 (240)
T d1ji0a_ 81 MGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKE-------RLKQLGGTLSGGEQQMLAIGRA 153 (240)
T ss_dssp TTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHT-------TTTSBSSSSCHHHHHHHHHHHH
T ss_pred HCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCHHH-------HHHCCHHHCCHHHHHHHHHHHH
T ss_conf 423556765545776369999998887327888999999999987417688-------8758543389999999999999
Q ss_pred HCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEECCCCCC-CCCCEEEEEECCEEEEECCHHHHHHC
Q ss_conf 603997867428677669888999999999887-5897799980577742-35878999929979990486789712
Q 000452 757 LYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL-LNSKTVLYVTHQVEFL-PAADLVLVIKDGKITQAGKYTDVINS 831 (1495)
Q Consensus 757 ly~~adI~LLDDp~SalD~~t~~~if~~~i~~~-l~~kTvIlvTH~~~~l-~~aD~Iivl~~G~I~~~G~~~~L~~~ 831 (1495)
+.++|++++|||||++||+.+...+++ .+..+ .+++|+|++||+++.. ..||+|++|++|+|+..|+.+|+.++
T Consensus 154 L~~~P~lLllDEPt~gLD~~~~~~i~~-~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 229 (240)
T d1ji0a_ 154 LMSRPKLLMMDEPSLGLAPILVSEVFE-VIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp HTTCCSEEEEECTTTTCCHHHHHHHHH-HHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred HHHCCCEEEECCCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCC
T ss_conf 982998740039886799999999999-9999996899899995889999996999999989999998489998429
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.3e-34 Score=297.50 Aligned_cols=209 Identities=20% Similarity=0.284 Sum_probs=181.2
Q ss_pred EEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCE
Q ss_conf 18974106785899994100016885089399999699989889999983356698637999697389999777722438
Q 000452 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLS 1326 (1495)
Q Consensus 1247 ~I~~~nv~~~Y~~~~~~vL~~is~~i~~GekigIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1326 (1495)
-++++||+.+| +|+||||+|++||.+||+|++|||||||+++|.|+. |.+|+|.++|.|+...+.+.++...+
T Consensus 3 il~~~dv~~~~------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~~ 75 (231)
T d1l7vc_ 3 VMQLQDVAEST------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRA 75 (231)
T ss_dssp EEEEEEECCTT------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHEE
T ss_pred EEEEECCCCCC------EECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCEEEEECCEECCCCCHHHHHHHCE
T ss_conf 99998741571------555888899489899999899980999999994887-99559999999998699899986402
Q ss_pred EECCCCCC-CCCCHHHHCCCC--CCCCHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC--
Q ss_conf 98156767-877577704999--8999999999999839967897100886521226999889039999999998725--
Q 000452 1327 IIPQDPVM-FEGTVRSNVDPL--EEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLK-- 1401 (1495)
Q Consensus 1327 iIpQdp~L-F~GTIR~NLdp~--~~~sD~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nlS~GQrQll~LARALLk-- 1401 (1495)
+++|+... |..++.+|+... .....+.+.++++.+++.+.+.. ...+||||||||+++|||+++
T Consensus 76 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----------~~~~LSgG~~Qrv~iA~al~~~~ 144 (231)
T d1l7vc_ 76 YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGR-----------STNQLSGGEWQRVRLAAVVLQIT 144 (231)
T ss_dssp EECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTCTTTTTS-----------BGGGCCHHHHHHHHHHHHHHHHC
T ss_pred EEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHCC-----------CHHHCCHHHHHHHHHHHHHHHHC
T ss_conf 4512135774420988764100146689999999986598767676-----------84456998899999999998517
Q ss_pred -----CCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCCHHHHC-CCEEEEEECCEEEEECCHHHHHHCC
Q ss_conf -----998699875888999998999999999856-99279987059022301-3989999384899854924786129
Q 000452 1402 -----RRKILMLDEATASVDTATDNLIQQSLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLENK 1473 (1495)
Q Consensus 1402 -----~~~ILiLDEaTsslD~~Te~~Iq~~Ir~~f-~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~g~p~~Ll~~~ 1473 (1495)
+|+|++|||||++||+.+...+.+.|++.. +++|+|+++|+++.+.. ||||++|++|++++.|+|++++.++
T Consensus 145 p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~~~ 223 (231)
T d1l7vc_ 145 PQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPP 223 (231)
T ss_dssp TTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSCHH
T ss_pred CCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCCH
T ss_conf 1338998899971877778989999999999999867999999967799999979999999799899988999981886
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.8e-32 Score=283.91 Aligned_cols=201 Identities=19% Similarity=0.295 Sum_probs=170.4
Q ss_pred CCEEEEEEEEEECCCCCCCCCCCCEEEEECCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEECCE------------E
Q ss_conf 4089983389835999999411311786288099998137863999999983798798758998494------------7
Q 000452 616 TAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------K 683 (1495)
Q Consensus 616 ~~I~i~~~~fsw~~~~~~~~L~~inl~i~~G~~vaIvG~~GSGKStLl~~ilGe~~~~~G~i~i~g~------------~ 683 (1495)
++|+++|.+.+|+ .+++|+|+||++++|+.++++||+|||||||+++|.|.++|++|+|.++|. +
T Consensus 1 gaI~v~nl~k~yg---~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~i 77 (238)
T d1vpla_ 1 GAVVVKDLRKRIG---KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLI 77 (238)
T ss_dssp CCEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTE
T ss_pred CCEEEEEEEEEEC---CEEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCHHHHHHHE
T ss_conf 9789995899999---9999806256884897999999999999999999966988788879998672446839887218
Q ss_pred EEECCCCCCCCC-CHHHHHHCCC---CCCHHH----HHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 999267756675-5889972199---899999----99999981928888634789864014798866647999999999
Q 000452 684 AYVAQSPWIQSG-KIEDNILFGK---EMDRER----YNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIAR 755 (1495)
Q Consensus 684 ayv~Q~pwi~~g-TIreNIlfG~---~~d~~~----y~~vi~ac~L~~Dl~~lp~Gd~T~IGe~G~nLSGGQKqRIaLAR 755 (1495)
+||||++.++.. |++||+.|.. ..++++ .+++++.+.|.+. ..++-.+||||||||++|||
T Consensus 78 ~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~lSgG~~qrv~iA~ 146 (238)
T d1vpla_ 78 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEK-----------IKDRVSTYSKGMVRKLLIAR 146 (238)
T ss_dssp EEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGG-----------GGSBGGGCCHHHHHHHHHHH
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHH-----------HHHHHHHCCHHHHHHHHHHH
T ss_conf 6750015468786677888989986179989999999999986797888-----------85045337998989999999
Q ss_pred HHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEECCCCCCC-CCCEEEEEECCEEEEECCHHHHHHC
Q ss_conf 8603997867428677669888999999999887-58977999805777423-5878999929979990486789712
Q 000452 756 ALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL-LNSKTVLYVTHQVEFLP-AADLVLVIKDGKITQAGKYTDVINS 831 (1495)
Q Consensus 756 Aly~~adI~LLDDp~SalD~~t~~~if~~~i~~~-l~~kTvIlvTH~~~~l~-~aD~Iivl~~G~I~~~G~~~~L~~~ 831 (1495)
|+.++|+|++||||+++||+...++++ +.+..+ .+++|+|++||+++.+. .||+|++|++|+|+..|+++++.+.
T Consensus 147 al~~~p~illLDEPt~gLD~~~~~~i~-~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 223 (238)
T d1vpla_ 147 ALMVNPRLAILDEPTSGLDVLNAREVR-KILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER 223 (238)
T ss_dssp HHTTCCSEEEEESTTTTCCHHHHHHHH-HHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred HHHCCCCEEEECCCCCCCCHHHHHHHH-HHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHC
T ss_conf 986599988733798897989999999-99999996599899995989999996999999989999999289999865
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=1.8e-32 Score=283.95 Aligned_cols=182 Identities=29% Similarity=0.435 Sum_probs=155.1
Q ss_pred CCEEEEECCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEECCE-----------EEEECCCCCCCC-CCHHHHHHCCC
Q ss_conf 311786288099998137863999999983798798758998494-----------799926775667-55889972199
Q 000452 638 DINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-----------KAYVAQSPWIQS-GKIEDNILFGK 705 (1495)
Q Consensus 638 ~inl~i~~G~~vaIvG~~GSGKStLl~~ilGe~~~~~G~i~i~g~-----------~ayv~Q~pwi~~-gTIreNIlfG~ 705 (1495)
|+||+++ ++.++++||+|||||||+++|.|.++|++|+|.++|. ++||+|+|-++. -|++|||.||.
T Consensus 17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~~l 95 (240)
T d2onka1 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGL 95 (240)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTC
T ss_pred EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHCCCEEECCCHHHCCCCHHHHHHHHHH
T ss_conf 9999749-979999979998099999999739998962899999998869989928522523144352201557666532
Q ss_pred C-CCH----HHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHH
Q ss_conf 8-999----99999999819288886347898640147988666479999999998603997867428677669888999
Q 000452 706 E-MDR----ERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSH 780 (1495)
Q Consensus 706 ~-~d~----~~y~~vi~ac~L~~Dl~~lp~Gd~T~IGe~G~nLSGGQKqRIaLARAly~~adI~LLDDp~SalD~~t~~~ 780 (1495)
. +++ ++.+++++.+.|.+.. ......||||||||++||||+.++|++++||||||+||+++...
T Consensus 96 ~~~~~~~~~~~v~~~l~~~gl~~~~-----------~~~~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~~ 164 (240)
T d2onka1 96 RNVERVERDRRVREMAEKLGIAHLL-----------DRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGV 164 (240)
T ss_dssp TTSCHHHHHHHHHHHHHTTTCTTTT-----------TCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCHHHH-----------HCCHHHCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHH
T ss_conf 3367788999999999863837566-----------57944489999899999877751677067528655588799999
Q ss_pred HHHHHHHHHH--CCCEEEEEECCCCCCCC-CCEEEEEECCEEEEECCHHHHHHCC
Q ss_conf 9999998875--89779998057774235-8789999299799904867897129
Q 000452 781 LFKEVLLGLL--NSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYTDVINSG 832 (1495)
Q Consensus 781 if~~~i~~~l--~~kTvIlvTH~~~~l~~-aD~Iivl~~G~I~~~G~~~~L~~~~ 832 (1495)
+.+. +..+. .+.|+|+|||+++.... ||+|++|++|+|++.|+.+|+++..
T Consensus 165 i~~~-i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~~ 218 (240)
T d2onka1 165 LMEE-LRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAK 218 (240)
T ss_dssp HHHH-HHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHHH-HHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHCCC
T ss_conf 9999-99998743976999818999999969999999899999990699983299
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=5.6e-32 Score=279.72 Aligned_cols=190 Identities=24% Similarity=0.412 Sum_probs=162.9
Q ss_pred EEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCE
Q ss_conf 18974106785899994100016885089399999699989889999983356698637999697389999777722438
Q 000452 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLS 1326 (1495)
Q Consensus 1247 ~I~~~nv~~~Y~~~~~~vL~~is~~i~~GekigIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1326 (1495)
.|+++|++++|.. +||+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++. ..|.+++
T Consensus 2 ~lev~~ls~~y~~---~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~-----~~~~~i~ 73 (200)
T d1sgwa_ 2 KLEIRDLSVGYDK---PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKIF 73 (200)
T ss_dssp EEEEEEEEEESSS---EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGEE
T ss_pred EEEEEEEEEEECC---EEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHH-----HHCCCEE
T ss_conf 5999989999399---2884208898599899999999971999999996620567788999989626-----7367089
Q ss_pred EECCCCCCCCC-CHHHHCCC-----CCCCCHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf 98156767877-57770499-----9899999999999983996789710088652122699988903999999999872
Q 000452 1327 IIPQDPVMFEG-TVRSNVDP-----LEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLL 1400 (1495)
Q Consensus 1327 iIpQdp~LF~G-TIR~NLdp-----~~~~sD~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nlS~GQrQll~LARALL 1400 (1495)
++||++.++.. |+++|+.. ....++++++++++..++.+ ++..+ .+||+|||||++||||++
T Consensus 74 ~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~----~~LSgG~~qrv~ia~al~ 141 (200)
T d1sgwa_ 74 FLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLD--------LKKKL----GELSQGTIRRVQLASTLL 141 (200)
T ss_dssp EECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCC--------TTSBG----GGSCHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCC--------CCCCC----CCCCCCHHHHHHHHHHHH
T ss_conf 995013578882899999999975488637999999998748856--------30126----868971888899999886
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHCCCEEEEEEC
Q ss_conf 599869987588899999899999999985699279987059022301398999938
Q 000452 1401 KRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSH 1457 (1495)
Q Consensus 1401 k~~~ILiLDEaTsslD~~Te~~Iq~~Ir~~f~~~TvI~IAHRl~ti~~~DrIlVLd~ 1457 (1495)
.+|++++|||||+++|+++...+.+.|++..++.++++|+|+ +.+..||++.+|.+
T Consensus 142 ~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~-~~l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 142 VNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSR-EELSYCDVNENLHK 197 (200)
T ss_dssp SCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEES-SCCTTSSEEEEGGG
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEE-CHHHHCCHHHHEEE
T ss_conf 499899986862016999999999999999867999999991-62544161234010
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=6.8e-30 Score=262.26 Aligned_cols=195 Identities=25% Similarity=0.406 Sum_probs=165.1
Q ss_pred CEEEEEEEEEECCCCCCCCCCCCEEEEECCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEECCE-------------E
Q ss_conf 089983389835999999411311786288099998137863999999983798798758998494-------------7
Q 000452 617 AIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------K 683 (1495)
Q Consensus 617 ~I~i~~~~fsw~~~~~~~~L~~inl~i~~G~~vaIvG~~GSGKStLl~~ilGe~~~~~G~i~i~g~-------------~ 683 (1495)
.++++|++.+ ..|+||||+|++||.++++||+|||||||+++|.|.. +.+|+|.++|. .
T Consensus 3 il~~~dv~~~-------~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~ 74 (231)
T d1l7vc_ 3 VMQLQDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHR 74 (231)
T ss_dssp EEEEEEECCT-------TTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHE
T ss_pred EEEEECCCCC-------CEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCEEEEECCEECCCCCHHHHHHHC
T ss_conf 9999874157-------1555888899489899999899980999999994887-9955999999999869989998640
Q ss_pred EEECCCCC-CCCCCHHHHHHCCCC--CCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC-
Q ss_conf 99926775-667558899721998--99999999999819288886347898640147988666479999999998603-
Q 000452 684 AYVAQSPW-IQSGKIEDNILFGKE--MDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQ- 759 (1495)
Q Consensus 684 ayv~Q~pw-i~~gTIreNIlfG~~--~d~~~y~~vi~ac~L~~Dl~~lp~Gd~T~IGe~G~nLSGGQKqRIaLARAly~- 759 (1495)
+|++|..- .+..++.+|+.++.. ...++.+++++.+.+.+. ++.+..+||||||||+++|||+++
T Consensus 75 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~~~~~~~LSgG~~Qrv~iA~al~~~ 143 (231)
T d1l7vc_ 75 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDK-----------LGRSTNQLSGGEWQRVRLAAVVLQI 143 (231)
T ss_dssp EEECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTCTTT-----------TTSBGGGCCHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCHHH-----------HCCCHHHCCHHHHHHHHHHHHHHHH
T ss_conf 24512135774420988764100146689999999986598767-----------6768445699889999999999851
Q ss_pred ------CCCEEEECCCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEECCCCC-CCCCCEEEEEECCEEEEECCHHHHHHC
Q ss_conf ------997867428677669888999999999887-589779998057774-235878999929979990486789712
Q 000452 760 ------DADIYLFDDPFSAVDAHTGSHLFKEVLLGL-LNSKTVLYVTHQVEF-LPAADLVLVIKDGKITQAGKYTDVINS 831 (1495)
Q Consensus 760 ------~adI~LLDDp~SalD~~t~~~if~~~i~~~-l~~kTvIlvTH~~~~-l~~aD~Iivl~~G~I~~~G~~~~L~~~ 831 (1495)
+|+++|||||+++||+.....+. +.+..+ .+++|+|++||+++. ...||+|++|++|+|++.|+.+|++..
T Consensus 144 ~p~~~p~p~llllDEPt~gLD~~~~~~i~-~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~~ 222 (231)
T d1l7vc_ 144 TPQANPAGQLLLLDEPMNSLDVAQQSALD-KILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTP 222 (231)
T ss_dssp CTTTCTTCCEEEESSCSTTCCHHHHHHHH-HHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSCH
T ss_pred CCCCCCCCCEEEECCCCCCCCHHHHHHHH-HHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCC
T ss_conf 71338998899971877778989999999-99999986799999996779999997999999979989998899998188
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.96 E-value=1.7e-28 Score=250.47 Aligned_cols=182 Identities=24% Similarity=0.430 Sum_probs=146.9
Q ss_pred CEEEEEEEEEECCCCCCCCCCCCEEEEECCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEECC--------EEEEECC
Q ss_conf 08998338983599999941131178628809999813786399999998379879875899849--------4799926
Q 000452 617 AIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG--------TKAYVAQ 688 (1495)
Q Consensus 617 ~I~i~~~~fsw~~~~~~~~L~~inl~i~~G~~vaIvG~~GSGKStLl~~ilGe~~~~~G~i~i~g--------~~ayv~Q 688 (1495)
.++++|.+++|+ +++|+|+||++++|+.++|+||+|||||||+++|.|.++|++|+|.++| .++|+||
T Consensus 2 ~lev~~ls~~y~----~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~~~~~i~~~~~ 77 (200)
T d1sgwa_ 2 KLEIRDLSVGYD----KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPE 77 (200)
T ss_dssp EEEEEEEEEESS----SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECS
T ss_pred EEEEEEEEEEEC----CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHHHHCCCEEEEEE
T ss_conf 599998999939----9288420889859989999999997199999999662056778899998962673670899950
Q ss_pred CCCCCCC-CHHHHHH-----CCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 7756675-5889972-----199899999999999819288886347898640147988666479999999998603997
Q 000452 689 SPWIQSG-KIEDNIL-----FGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDAD 762 (1495)
Q Consensus 689 ~pwi~~g-TIreNIl-----fG~~~d~~~y~~vi~ac~L~~Dl~~lp~Gd~T~IGe~G~nLSGGQKqRIaLARAly~~ad 762 (1495)
++.++.. |++||+. +|...++++..++++...+.+ +.++-.+||||||||+++|||++++|+
T Consensus 78 ~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~------------~~~~~~~LSgG~~qrv~ia~al~~~~~ 145 (200)
T d1sgwa_ 78 EIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLD------------LKKKLGELSQGTIRRVQLASTLLVNAE 145 (200)
T ss_dssp SCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCC------------TTSBGGGSCHHHHHHHHHHHHTTSCCS
T ss_pred CCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCC------------CCCCCCCCCCCHHHHHHHHHHHHCCCC
T ss_conf 13578882899999999975488637999999998748856------------301268689718888999998864998
Q ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEEEEC
Q ss_conf 867428677669888999999999887589779998057774235878999929
Q 000452 763 IYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKD 816 (1495)
Q Consensus 763 I~LLDDp~SalD~~t~~~if~~~i~~~l~~kTvIlvTH~~~~l~~aD~Iivl~~ 816 (1495)
++|||||+++||+.+...+++. +....+++++++++|+- -+..||.+.+|..
T Consensus 146 llllDEPt~gLD~~~~~~i~~~-l~~~~~~~~~~ii~~~~-~l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 146 IYVLDDPVVAIDEDSKHKVLKS-ILEILKEKGIVIISSRE-ELSYCDVNENLHK 197 (200)
T ss_dssp EEEEESTTTTSCTTTHHHHHHH-HHHHHHHHSEEEEEESS-CCTTSSEEEEGGG
T ss_pred EEEECCCCCCCCHHHHHHHHHH-HHHHHHCCCEEEEEEEC-HHHHCCHHHHEEE
T ss_conf 9998686201699999999999-99998679999999916-2544161234010
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.93 E-value=5.8e-20 Score=179.02 Aligned_cols=309 Identities=9% Similarity=0.040 Sum_probs=248.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999997999999999999999999999999999999850898862368999999999999999999999999999999
Q 000452 292 IKAMFRSVWKDVLLTALVAIVCTLATYVGPYLIDTLVQYLSGKRDFENEGYALVSAFCVAKLVECLCQRFFVFRLEQLGI 371 (1495)
Q Consensus 292 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~i~~~~~~~~~~~~~~~~~ 371 (1495)
++.+.+.+|+.+++..++.++..++....|++++.++|......+ ....+.+++.+++..++..++.....+...+.+.
T Consensus 7 l~~~~~~~k~~l~~~~i~~~~~~~~~~~~~~~~~~~id~~~~~~~-~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 85 (319)
T d3b60a2 7 LWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTD-RSVLLWMPLVVIGLMILRGITSYISSYCISWVSG 85 (319)
T ss_dssp HHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTT-HHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999999999999999998744687-7899999999999999764533546654434310
Q ss_pred HHHHHHHHHHHHHHHCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999998569910005899899999999999999999999-35899999999999999999987999999999
Q 000452 372 RLRAALIAMIYNKGLKLSSQAKQGNTSGEIINFMTVDAERVAELSWY-IHDPWLFLFEVALSFLILYKSLGIASVAAFFG 450 (1495)
Q Consensus 372 ~ir~~L~~~iy~K~L~ls~~~~~~~~~G~iinl~s~D~~~i~~~~~~-~~~~~~~plqi~~~~~lL~~~lg~~~l~gl~~ 450 (1495)
++...++..+|+|.++++....+++++|++++.++.|++.+.+.... ........+.++.++.+++......++..++.
T Consensus 86 ~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~li~l~~ 165 (319)
T d3b60a2 86 KVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVL 165 (319)
T ss_dssp HHHHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHH
T ss_pred CCCCCHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 00110004777765010111102333221111121212100001111120011233445668888876520021025668
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999993279999835189999999999999999999999998899999
Q 000452 451 TVIFMLVNVPLSTVQEKFQNELMKSKDERMKATSEILRNMRILKLQGWELKFLSKTIDLRKSESGWLKRCLYTSSITSFV 530 (1495)
Q Consensus 451 ~~i~~~~~~~~~~~~~~~~~~~m~~~D~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~ 530 (1495)
+++...+.....++..+..++.++..++......|.++|++++|.+++|+.+.++..+..++..+...+.....+.....
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (319)
T d3b60a2 166 APIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPI 245 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999988766668778789887644567788777624872353111010245666665313567788888777740640
Q ss_pred HHHHHHHH--HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99998999--999999999834875777899999999999999999999999999999999999997448889
Q 000452 531 FWCAPTFV--SVITFGTCILLKVPLESGKVLSAIATFRLLQILIYKLPAIISMTIQTKVSLQRIASFFCLDEL 601 (1495)
Q Consensus 531 ~~~~p~~v--~~~tf~~~~~~~~~L~~~~vft~la~f~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~ 601 (1495)
......+. .++.++.+....+.+++|.+++++.+...+..|+..++..+..+.++.+|.+|+.++++.|++
T Consensus 246 ~~~~~~~~~~~~l~~g~~~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~elld~~~E 318 (319)
T d3b60a2 246 IQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQE 318 (319)
T ss_dssp HHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 1000000237999999999980997899999999999999999999999999999999999999999669989
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.92 E-value=1e-19 Score=176.97 Aligned_cols=309 Identities=14% Similarity=0.100 Sum_probs=248.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH----H--HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999979999999999999999999999999999998508988623----6--8999999999999999999999999
Q 000452 292 IKAMFRSVWKDVLLTALVAIVCTLATYVGPYLIDTLVQYLSGKRDFEN----E--GYALVSAFCVAKLVECLCQRFFVFR 365 (1495)
Q Consensus 292 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~----~--g~~l~~~l~~~~~i~~~~~~~~~~~ 365 (1495)
+..+.+.||+.++...++.++..++....|++++.++|.+.+.+.... . .+.++.++++..++..++.....+.
T Consensus 5 l~~~~k~~k~~~~~~~~~~~~~~~~~~~~p~l~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 84 (323)
T d2hyda2 5 YLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYL 84 (323)
T ss_dssp HHHHHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999986267742155689999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999856991000589989999999999999999999-935899999999999999999987999
Q 000452 366 LEQLGIRLRAALIAMIYNKGLKLSSQAKQGNTSGEIINFMTVDAERVAELSW-YIHDPWLFLFEVALSFLILYKSLGIAS 444 (1495)
Q Consensus 366 ~~~~~~~ir~~L~~~iy~K~L~ls~~~~~~~~~G~iinl~s~D~~~i~~~~~-~~~~~~~~plqi~~~~~lL~~~lg~~~ 444 (1495)
..+.+.+++..++..+|+|.++++....+++++|+++|+++.|++.+.+... .+...+...+.+++++.+++......+
T Consensus 85 ~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~ 164 (323)
T d2hyda2 85 AQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLT 164 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCTTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999855677888876654023321000122211000111133210011134542011146653346544000014688
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999999993279999835189999999999999999999999998
Q 000452 445 VAAFFGTVIFMLVNVPLSTVQEKFQNELMKSKDERMKATSEILRNMRILKLQGWELKFLSKTIDLRKSESGWLKRCLYTS 524 (1495)
Q Consensus 445 l~gl~~~~i~~~~~~~~~~~~~~~~~~~m~~~D~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~ 524 (1495)
+..++..++...+...+.++..+..++..+..++..+.+.|.++|+++||.+++|+.+.++..+..++..+...+.....
T Consensus 165 li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~~~~~ 244 (323)
T d2hyda2 165 LAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWN 244 (323)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHCCCCCCCCHHHHHHHHH
T ss_conf 89999887777777641233320267789899999978788755970234676411100233022311110156776520
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 89999999998999--99999999983487577789999999999999999999999999999999999999744888
Q 000452 525 SITSFVFWCAPTFV--SVITFGTCILLKVPLESGKVLSAIATFRLLQILIYKLPAIISMTIQTKVSLQRIASFFCLDE 600 (1495)
Q Consensus 525 ~~~~~~~~~~p~~v--~~~tf~~~~~~~~~L~~~~vft~la~f~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e 600 (1495)
............+. ....++.+....+.+++|.+++++.++..+..|+..++..+..+.++.+|++||.++|++++
T Consensus 245 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~elLd~e~ 322 (323)
T d2hyda2 245 AYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDY 322 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 000111110120558999999999998499889999999999999999999999999999999999999999977999
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.92 E-value=1.2e-19 Score=176.51 Aligned_cols=314 Identities=11% Similarity=0.103 Sum_probs=254.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999830136899999999999999985699999532567787877650378999999987999999999999999
Q 000452 914 SVYWKYITAAYGGVLVPFILLAQTLFQILQIASNYWIAWATPASKDIKPRVTGSMLLIVFVALAFGSSFCILARSTLLAT 993 (1495)
Q Consensus 914 ~~y~~y~~~~~~~~~~~~~~~~~~l~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~l~~y~~l~~~~~~~~~~r~~~~~~ 993 (1495)
+.+|.|++..++ ...+.+++.++..+.....++.+....+.............+..++.++.++..++.+.+.+....
T Consensus 5 krl~~~~~~~k~--~l~~~~i~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~ 82 (319)
T d3b60a2 5 RRLWPTIAPFKA--GLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITSYISSYCISW 82 (319)
T ss_dssp HHHHHHHGGGHH--HHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999--999999999999999999999999999987446877899999999999999764533546654434
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999988038763021346552045873425698735579999999999999999999999879999999
Q 000452 994 AGYKTATLLFNKMHYCIFRAPMSFFDATPSGRIINRASTDQSAVDLSIPALIGSFAFSIIRVLGVIGVMSLVAWQVFIVF 1073 (1495)
Q Consensus 994 ~~~~~s~~l~~~ll~~il~ap~~ffd~tp~GrilnR~s~D~~~id~~i~~~l~~~~~~~~~~l~~i~v~~~~~~~~~~i~ 1073 (1495)
.+.+...++++++++++++.|++||++.++|++++|+++|++.+...+...+...+...+.+++.++.++..+|.+.++.
T Consensus 83 ~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~li~ 162 (319)
T d3b60a2 83 VSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIIL 162 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHH
T ss_pred HHHCCCCCHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 31000110004777765010111102333221111121212100001111120011233445668888876520021025
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
Q ss_conf 99999999999999999999999998841057999998411138887614289999999999997401599999999999
Q 000452 1074 IPVIATCIWYQQYYISSARELSRLVGVCKAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGYSRPTFHVAAAMEWL 1153 (1495)
Q Consensus 1074 ip~~~~~~~~~~~y~~~~r~l~rl~~~~~spi~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl 1153 (1495)
+..+++...+..++.+..++..+......+...++..|.++|+.+||+|+.|+++.+++.+..+...+..........+.
T Consensus 163 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (319)
T d3b60a2 163 VVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSIS 242 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 66899999988766668778789887644567788777624872353111010245666665313567788888777740
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 9999999999999999999-984389778999999999999999999999999999999866999999874199999
Q 000452 1154 GFRLDMLSNITFAFSLVFL-ISIPKGFIDPAIAGLAVTYGLTLNNLQAMLIWLACQMENKIISVERIFQYTCIPSEP 1229 (1495)
Q Consensus 1154 ~~rl~~l~~~~~~~~~~~~-i~~~~~~~~~~~~glalsy~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~ 1229 (1495)
.....++..+..+++..+. .....|.+++|.....+.|...+..++..+.....++++..+|.+|+.|+++.|+|+
T Consensus 243 ~~~~~~~~~~~~~~~l~~g~~~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~elld~~~E~ 319 (319)
T d3b60a2 243 DPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEK 319 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 64010000002379999999999809978999999999999999999999999999999999999999996699899
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.89 E-value=1.7e-19 Score=175.13 Aligned_cols=313 Identities=12% Similarity=0.079 Sum_probs=245.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC--HHHH-----HHHHHHHHHHHHHHHHH
Q ss_conf 9999999983013689999999999999998569999953256778787765--0378-----99999998799999999
Q 000452 914 SVYWKYITAAYGGVLVPFILLAQTLFQILQIASNYWIAWATPASKDIKPRVT--GSML-----LIVFVALAFGSSFCILA 986 (1495)
Q Consensus 914 ~~y~~y~~~~~~~~~~~~~~~~~~l~~~~~~~~~~wl~~~~~~~~~~~~~~~--~~~~-----l~~y~~l~~~~~~~~~~ 986 (1495)
+.+++|++..++ .....+++.++..+.....++.++...+.......... .... ...+.++.+...++.+.
T Consensus 3 Krl~~~~k~~k~--~~~~~~~~~~~~~~~~~~~p~l~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 80 (323)
T d2hyda2 3 KRYLQFVKPYKY--RIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFI 80 (323)
T ss_dssp HHHHHHHGGGHH--HHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999--999999999999999999999999999998626774215568999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999998803876302134655204587342569873557999999999999999999999987
Q 000452 987 RSTLLATAGYKTATLLFNKMHYCIFRAPMSFFDATPSGRIINRASTDQSAVDLSIPALIGSFAFSIIRVLGVIGVMSLVA 1066 (1495)
Q Consensus 987 r~~~~~~~~~~~s~~l~~~ll~~il~ap~~ffd~tp~GrilnR~s~D~~~id~~i~~~l~~~~~~~~~~l~~i~v~~~~~ 1066 (1495)
+.++....+.+...+++.++++++++.|++|||+.++|++++|+++|...++..+...+...+...+..++.+++++..+
T Consensus 81 ~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~ 160 (323)
T d2hyda2 81 RQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLD 160 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 99999999985567788887665402332100012221100011113321001113454201114665334654400001
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHCHHHHH
Q ss_conf 99999999999999999999999999999999884105799999841113888761428999999999999740159999
Q 000452 1067 WQVFIVFIPVIATCIWYQQYYISSARELSRLVGVCKAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGYSRPTFHV 1146 (1495)
Q Consensus 1067 ~~~~~i~ip~~~~~~~~~~~y~~~~r~l~rl~~~~~spi~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~ 1146 (1495)
|.+.++.++..++...+..++.+..++..+......+...+++.|+++|+.+||+|+.|+++.+++.+..+...+.....
T Consensus 161 ~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~ 240 (323)
T d2hyda2 161 VKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKH 240 (323)
T ss_dssp TTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHCCCCCCCCHHHHH
T ss_conf 46888999988777777764123332026778989999997878875597023467641110023302231111015677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999999999999999999999999-998438977899999999999999999999999999999986699999987419
Q 000452 1147 AAAMEWLGFRLDMLSNITFAFSLVF-LISIPKGFIDPAIAGLAVTYGLTLNNLQAMLIWLACQMENKIISVERIFQYTCI 1225 (1495)
Q Consensus 1147 ~~~~~wl~~rl~~l~~~~~~~~~~~-~i~~~~~~~~~~~~glalsy~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~ 1225 (1495)
.....+.......+..+.......+ ......|.+++|.....+.+...+..++..+...+.++.+.+.|.||+.+++|.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~elLd~ 320 (323)
T d2hyda2 241 TRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDE 320 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 65200001111101205589999999999984998899999999999999999999999999999999999999999779
Q ss_pred CCC
Q ss_conf 999
Q 000452 1226 PSE 1228 (1495)
Q Consensus 1226 ~~E 1228 (1495)
|+|
T Consensus 321 e~e 323 (323)
T d2hyda2 321 DYD 323 (323)
T ss_dssp CCS
T ss_pred CCC
T ss_conf 998
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.41 E-value=1.5e-14 Score=133.66 Aligned_cols=172 Identities=12% Similarity=0.066 Sum_probs=119.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEEECCCCCCCCCCHHHHCCCCCCCCHHHHH
Q ss_conf 39999969998988999998335669863799969738999977772243898156767877577704999899999999
Q 000452 1276 KKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIW 1355 (1495)
Q Consensus 1276 ekigIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~GTIR~NLdp~~~~sD~eI~ 1355 (1495)
.||+|+|++|||||||++.+.+.++|..|.+.+++.+....+...........++.+.++..+...+......
T Consensus 1 ~ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 73 (178)
T d1ye8a1 1 MKIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSY------- 73 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTE-------
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_conf 9899998999389999999981488886469987713288887653112336677788754113455443023-------
Q ss_pred HHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCC--CHHHHHHHHHHHHHHCCC
Q ss_conf 999983996789710088652122699988903999999999872599869987588899--999899999999985699
Q 000452 1356 EALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASV--DTATDNLIQQSLRQHFSD 1433 (1495)
Q Consensus 1356 ~aL~~~~L~~~i~~lp~gLdt~v~e~G~nlS~GQrQll~LARALLk~~~ILiLDEaTssl--D~~Te~~Iq~~Ir~~f~~ 1433 (1495)
+.+... ..+++|++|+.++++++.++|+++++||++... +.+....+.+.+++ .+
T Consensus 74 -----------------~~~~~~----~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~~~~~~~~l~~~l~~--~~ 130 (178)
T d1ye8a1 74 -----------------GVNVQY----FEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD--PN 130 (178)
T ss_dssp -----------------EECHHH----HHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC--TT
T ss_pred -----------------HCCCCH----HHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHCC--CC
T ss_conf -----------------037625----6653201378999999740997423027773100457999999987505--79
Q ss_pred CEEEEEECCCHHHHCCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHH
Q ss_conf 2799870590223013989999384899854924786129976899999
Q 000452 1434 CTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSFSQLVA 1482 (1495)
Q Consensus 1434 ~TvI~IAHRl~ti~~~DrIlVLd~G~IvE~g~p~~Ll~~~~s~f~~lv~ 1482 (1495)
+|+|.++|+......+|++..+++|++++.++. +++..+.+.+.
T Consensus 131 ~~il~~~h~~~~~~~~~~i~~~~~~~i~~v~~~-----nrd~~~~~i~~ 174 (178)
T d1ye8a1 131 VNVVATIPIRDVHPLVKEIRRLPGAVLIELTPE-----NRDVILEDILS 174 (178)
T ss_dssp SEEEEECCSSCCSHHHHHHHTCTTCEEEECCTT-----TTTTHHHHHHH
T ss_pred CEEEEEECCHHHHHHHCEEEEEECCEEEEECCC-----CHHHHHHHHHH
T ss_conf 789999744778986365998719999998996-----47889999999
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.13 E-value=3.8e-12 Score=113.50 Aligned_cols=147 Identities=11% Similarity=0.083 Sum_probs=102.3
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEECCEEE--E-----------ECCCCCCCCCCHHHHHHCCCCCCHHHHH
Q ss_conf 09999813786399999998379879875899849479--9-----------9267756675588997219989999999
Q 000452 647 MRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKA--Y-----------VAQSPWIQSGKIEDNILFGKEMDRERYN 713 (1495)
Q Consensus 647 ~~vaIvG~~GSGKStLl~~ilGe~~~~~G~i~i~g~~a--y-----------v~Q~pwi~~gTIreNIlfG~~~d~~~y~ 713 (1495)
.+++|+||+|||||||++.|+|++++..|.+...+... + .++.+.....+...+..+++.
T Consensus 1 ~ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 73 (178)
T d1ye8a1 1 MKIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSY------- 73 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTE-------
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_conf 9899998999389999999981488886469987713288887653112336677788754113455443023-------
Q ss_pred HHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHC--
Q ss_conf 999981928888634789864014798866647999999999860399786742867766988899999999988758--
Q 000452 714 AVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLN-- 791 (1495)
Q Consensus 714 ~vi~ac~L~~Dl~~lp~Gd~T~IGe~G~nLSGGQKqRIaLARAly~~adI~LLDDp~SalD~~t~~~if~~~i~~~l~-- 791 (1495)
.+...-..+++|+++|.+++++..++|+++++|||....+. .... .+.+...++
T Consensus 74 ---------------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~--~~~~-~~~l~~~l~~~ 129 (178)
T d1ye8a1 74 ---------------------GVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELF--SKKF-RDLVRQIMHDP 129 (178)
T ss_dssp ---------------------EECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGG--CHHH-HHHHHHHHTCT
T ss_pred ---------------------HCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHH--HHHH-HHHHHHHHCCC
T ss_conf ---------------------03762566532013789999997409974230277731004--5799-99999875057
Q ss_pred CCEEEEEECCCCCCCCCCEEEEEECCEEEEECC
Q ss_conf 977999805777423587899992997999048
Q 000452 792 SKTVLYVTHQVEFLPAADLVLVIKDGKITQAGK 824 (1495)
Q Consensus 792 ~kTvIlvTH~~~~l~~aD~Iivl~~G~I~~~G~ 824 (1495)
++|+|+++|+.+..+.+|++..+++|+++..++
T Consensus 130 ~~~il~~~h~~~~~~~~~~i~~~~~~~i~~v~~ 162 (178)
T d1ye8a1 130 NVNVVATIPIRDVHPLVKEIRRLPGAVLIELTP 162 (178)
T ss_dssp TSEEEEECCSSCCSHHHHHHHTCTTCEEEECCT
T ss_pred CCEEEEEECCHHHHHHHCEEEEEECCEEEEECC
T ss_conf 978999974477898636599871999999899
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.10 E-value=4.2e-10 Score=96.39 Aligned_cols=72 Identities=24% Similarity=0.304 Sum_probs=61.0
Q ss_pred CCCCHHHHHHHHHHH----HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCCHHHHCCCEEEEE
Q ss_conf 889039999999998----725998699875888999998999999999856-992799870590223013989999
Q 000452 1384 NWSMGQRQLVCLGRV----LLKRRKILMLDEATASVDTATDNLIQQSLRQHF-SDCTVITIAHRITSVIDSDMVLLL 1455 (1495)
Q Consensus 1384 nlS~GQrQll~LARA----LLk~~~ILiLDEaTsslD~~Te~~Iq~~Ir~~f-~~~TvI~IAHRl~ti~~~DrIlVL 1455 (1495)
.+|||||.+++||-. ...+++|++||||++++|+.+...+.+.|++.. .++-+|+|||++.+...+|+++..
T Consensus 332 ~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 332 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGV 408 (427)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEE
T ss_conf 32230479999999999954799977999688777899999999999999728998899995878999736617999
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.94 E-value=7e-08 Score=77.70 Aligned_cols=72 Identities=17% Similarity=0.252 Sum_probs=56.8
Q ss_pred CCCHHHHHHHHHHHH----HCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCCCCCCCEEEEE
Q ss_conf 666479999999998----6039978674286776698889999999998875-897799980577742358789999
Q 000452 742 NLSGGQKQRIQIARA----LYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL-NSKTVLYVTHQVEFLPAADLVLVI 814 (1495)
Q Consensus 742 nLSGGQKqRIaLARA----ly~~adI~LLDDp~SalD~~t~~~if~~~i~~~l-~~kTvIlvTH~~~~l~~aD~Iivl 814 (1495)
.||||||.+++||-. -+.++++++||||.+++|+.....+.+ .+.... ++.-+|++||+++++..||.++..
T Consensus 332 ~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~-~l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 332 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAA-YIRRHRNPDLQFIVISLKNTMFEKSDALVGV 408 (427)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHH-HHHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHCCCCEEEEEECCHHHHHHCCCEEEE
T ss_conf 3223047999999999995479997799968877789999999999-9999728998899995878999736617999
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.88 E-value=9.8e-08 Score=76.50 Aligned_cols=80 Identities=21% Similarity=0.305 Sum_probs=67.0
Q ss_pred CCCCHHHHHHHHHHHH----CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHCCCEEEE--EEC
Q ss_conf 8890399999999987----2599869987588899999899999999985699279987059022301398999--938
Q 000452 1384 NWSMGQRQLVCLGRVL----LKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLL--LSH 1457 (1495)
Q Consensus 1384 nlS~GQrQll~LARAL----Lk~~~ILiLDEaTsslD~~Te~~Iq~~Ir~~f~~~TvI~IAHRl~ti~~~DrIlV--Ld~ 1457 (1495)
.+|.|||+++.++..+ ..+++++++|||-+++++.....+.+.|++..++.-+|++||++..+..+|+++. +++
T Consensus 219 ~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~~~d~~~~v~~~~ 298 (308)
T d1e69a_ 219 LLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVN 298 (308)
T ss_dssp GSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESS
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEEEEEC
T ss_conf 02577766777776655654226744554320335797899999999998554887999989889997324289999969
Q ss_pred C--EEEEE
Q ss_conf 4--89985
Q 000452 1458 G--LIEEY 1463 (1495)
Q Consensus 1458 G--~IvE~ 1463 (1495)
| +|++-
T Consensus 299 g~s~i~~~ 306 (308)
T d1e69a_ 299 GVSAIVPV 306 (308)
T ss_dssp SCEEEEEC
T ss_pred CEEEEEEE
T ss_conf 99999998
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.47 E-value=6.2e-06 Score=61.41 Aligned_cols=76 Identities=24% Similarity=0.340 Sum_probs=62.0
Q ss_pred CCCCHHHHHHHHHHHHH----CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEE--E
Q ss_conf 86664799999999986----03997867428677669888999999999887589779998057774235878999--9
Q 000452 741 INLSGGQKQRIQIARAL----YQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLV--I 814 (1495)
Q Consensus 741 ~nLSGGQKqRIaLARAl----y~~adI~LLDDp~SalD~~t~~~if~~~i~~~l~~kTvIlvTH~~~~l~~aD~Iiv--l 814 (1495)
..+|+|||+...++..+ ...+.++++|||=++|++...+.+.+ .+....++.-+|++||++.++..+|+++. |
T Consensus 218 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~-~l~~~~~~~QviitTHsp~~~~~~d~~~~v~~ 296 (308)
T d1e69a_ 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKR-LLKENSKHTQFIVITHNKIVMEAADLLHGVTM 296 (308)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHH-HHHHHTTTSEEEEECCCTTGGGGCSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHH-HHHHHCCCCEEEEEECCHHHHHHCCCEEEEEE
T ss_conf 10257776677777665565422674455432033579789999999-99985548879999898899973242899999
Q ss_pred ECC
Q ss_conf 299
Q 000452 815 KDG 817 (1495)
Q Consensus 815 ~~G 817 (1495)
++|
T Consensus 297 ~~g 299 (308)
T d1e69a_ 297 VNG 299 (308)
T ss_dssp SSS
T ss_pred ECC
T ss_conf 699
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=97.05 E-value=0.0085 Score=35.10 Aligned_cols=124 Identities=22% Similarity=0.268 Sum_probs=64.0
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEECCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHCCHHHH
Q ss_conf 80999981378639999999837987987589984947999267756675588997219989999999999981928888
Q 000452 646 GMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMDRERYNAVLDACSLEKDL 725 (1495)
Q Consensus 646 G~~vaIvG~~GSGKStLl~~ilGe~~~~~G~i~i~g~~ayv~Q~pwi~~gTIreNIlfG~~~d~~~y~~vi~ac~L~~Dl 725 (1495)
|=+++++|++|+|||||++.+.|.-... ++..|- +.++.+.....+. +.
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~~~~------------~~~~~~----~~~~~~~~~~~~~---------------~~ 49 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGREAAI------------VTDIAG----TTRDVLREHIHID---------------GM 49 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSC------------CCSSTT----CCCSCEEEEEEET---------------TE
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCEE------------EECCCC----CCCCEEEEEEECC---------------CC
T ss_conf 9899998999998999999996888667------------512466----4220476532026---------------82
Q ss_pred HHCCCCCCCCCCCCC--CCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 634789864014798--866647999999999860399786742867766988899999999988758977999805777
Q 000452 726 EILSFGDQTVVGERG--INLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVE 803 (1495)
Q Consensus 726 ~~lp~Gd~T~IGe~G--~nLSGGQKqRIaLARAly~~adI~LLDDp~SalD~~t~~~if~~~i~~~l~~kTvIlvTH~~~ 803 (1495)
....+...| ..-.+.++..+..+...|.++|+++++-..+.-+.....+.+.+.+.....++.+|+|-+..+
T Consensus 50 ------~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~iilv~NK~D 123 (161)
T d2gj8a1 50 ------PLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKAD 123 (161)
T ss_dssp ------EEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHH
T ss_pred ------EEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCHHH
T ss_conf ------35413653212246520247899999998741332011025654203455544455542014101020465444
Q ss_pred CCC
Q ss_conf 423
Q 000452 804 FLP 806 (1495)
Q Consensus 804 ~l~ 806 (1495)
..+
T Consensus 124 l~~ 126 (161)
T d2gj8a1 124 ITG 126 (161)
T ss_dssp HHC
T ss_pred HHH
T ss_conf 335
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.60 E-value=0.0014 Score=41.77 Aligned_cols=36 Identities=33% Similarity=0.613 Sum_probs=22.5
Q ss_pred ECCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 288099998137863999999983798798758998
Q 000452 644 FHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKL 679 (1495)
Q Consensus 644 ~~G~~vaIvG~~GSGKStLl~~ilGe~~~~~G~i~i 679 (1495)
+.|.-+.|+|++||||||+++++++++++..--+.+
T Consensus 164 ~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivti 199 (323)
T d1g6oa_ 164 AIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI 199 (323)
T ss_dssp HHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred HHCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEEC
T ss_conf 837888999403566257899986530145623311
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.47 E-value=0.025 Score=31.20 Aligned_cols=37 Identities=22% Similarity=0.206 Sum_probs=26.8
Q ss_pred CCCCCCCEEEEECCCEEEEEECCCCCHHHHHHHHHCC
Q ss_conf 9941131178628809999813786399999998379
Q 000452 633 NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGE 669 (1495)
Q Consensus 633 ~~~L~~inl~i~~G~~vaIvG~~GSGKStLl~~ilGe 669 (1495)
-+.|.++.--+.+|+++.|.|++|+|||+|+.-+.--
T Consensus 22 ~~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~ 58 (277)
T d1cr2a_ 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQ 58 (277)
T ss_dssp CTTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 3668887469789808999947999799999999972
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.39 E-value=0.00012 Score=50.72 Aligned_cols=162 Identities=10% Similarity=0.011 Sum_probs=84.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEEECCCCCCCCCCHHHHCCC------CCCC
Q ss_conf 3999996999898899999833566986379996973899997777224389815676787757770499------9899
Q 000452 1276 KKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNVDP------LEEY 1349 (1495)
Q Consensus 1276 ekigIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~GTIR~NLdp------~~~~ 1349 (1495)
..|.|+|+.|+|||||++.+.+.+....+.+.+.+.+........+.....-+.|+...+.....++... ....
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSRVGLEPPPGKRECRVGQYV 81 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEECCEEETTSSEEEEEEEETTSCEEEEEECCCCCCSSSCCEESSSSE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 69999889997199999999999997799799998455012221146541234330246654300103444143223110
Q ss_pred -CHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf -9999999999839967897100886521226999889039999999998725998699875888999998999999999
Q 000452 1350 -TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLR 1428 (1495)
Q Consensus 1350 -sD~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nlS~GQrQll~LARALLk~~~ILiLDEaTsslD~~Te~~Iq~~Ir 1428 (1495)
..+++.+. ....+.........+.+..+.+.....+......+.+.+.++..++++++...+..-+... .+.+.++
T Consensus 82 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 158 (189)
T d2i3ba1 82 VDLTSFEQL-ALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPGTIILGTIPVPKGKPL--ALVEEIR 158 (189)
T ss_dssp ECHHHHHTT-TTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCSSCCEEEECCCCCSSCC--TTHHHHH
T ss_pred CCHHHHHHH-HHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHH--HHHHHHH
T ss_conf 037777778-8999999988762189706861433330535999999999854686599961555775569--9999986
Q ss_pred HHCCCCEEEEEEC
Q ss_conf 8569927998705
Q 000452 1429 QHFSDCTVITIAH 1441 (1495)
Q Consensus 1429 ~~f~~~TvI~IAH 1441 (1495)
+ .++.+++.++.
T Consensus 159 ~-~~~~~~~~lt~ 170 (189)
T d2i3ba1 159 N-RKDVKVFNVTK 170 (189)
T ss_dssp T-TCCSEEEECCS
T ss_pred C-CCCCEEEEECH
T ss_conf 7-89974999786
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=96.34 E-value=0.0061 Score=36.30 Aligned_cols=118 Identities=21% Similarity=0.258 Sum_probs=68.6
Q ss_pred EEEEECCCEEEEEECCCCCHHHHHHHHH--------CCC-CCCCCEEEECCEEEEECCCCCCCCC-CHHHHHHCCCC-C-
Q ss_conf 1786288099998137863999999983--------798-7987589984947999267756675-58899721998-9-
Q 000452 640 NLKVFHGMRVAVCGTVGSGKSSLLSCIL--------GEV-PKISGTLKLCGTKAYVAQSPWIQSG-KIEDNILFGKE-M- 707 (1495)
Q Consensus 640 nl~i~~G~~vaIvG~~GSGKStLl~~il--------Ge~-~~~~G~i~i~g~~ayv~Q~pwi~~g-TIreNIlfG~~-~- 707 (1495)
|+.+. ++.+.|+||+.|||||+++.+. |.+ |..+.++ +.--.|+.. ...||+.-|.- |
T Consensus 30 di~~~-~~~~iiTGpN~~GKSt~lk~i~l~~ilAq~G~~vpA~~~~i---------~~~d~I~~~~~~~d~~~~~~StF~ 99 (224)
T d1ewqa2 30 DLEMA-HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEEAHL---------PLFDGIYTRIGASDDLAGGKSTFM 99 (224)
T ss_dssp EEEES-SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSEEEE---------CCCSEEEEECCC------CCSHHH
T ss_pred EEEEC-CCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEECCCEEE---------EECCEEEEEECCCCCCCCCCCHHH
T ss_conf 58847-86799978873453234556589999985250461375199---------401169999877760237830789
Q ss_pred -CHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf -9999999999819288886347898640147988666479999999998603997867428677669888999999999
Q 000452 708 -DRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVL 786 (1495)
Q Consensus 708 -d~~~y~~vi~ac~L~~Dl~~lp~Gd~T~IGe~G~nLSGGQKqRIaLARAly~~adI~LLDDp~SalD~~t~~~if~~~i 786 (1495)
+-.+..++++. -.+..++|+||.+++-|+.-+..+....+
T Consensus 100 ~el~~~~~il~~---------------------------------------~~~~sLvliDE~~~gT~~~eg~ala~ail 140 (224)
T d1ewqa2 100 VEMEEVALILKE---------------------------------------ATENSLVLLDEVGRGTSSLDGVAIATAVA 140 (224)
T ss_dssp HHHHHHHHHHHH---------------------------------------CCTTEEEEEESTTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---------------------------------------CCCCCEEEECCCCCCCCHHHHCCHHHHHH
T ss_conf 867889877502---------------------------------------89772785545456862332002588888
Q ss_pred HHHH-CCCEEEEEECCCCCCC
Q ss_conf 8875-8977999805777423
Q 000452 787 LGLL-NSKTVLYVTHQVEFLP 806 (1495)
Q Consensus 787 ~~~l-~~kTvIlvTH~~~~l~ 806 (1495)
..+. ++.+++++||..+...
T Consensus 141 e~L~~~~~~~i~tTH~~eL~~ 161 (224)
T d1ewqa2 141 EALHERRAYTLFATHYFELTA 161 (224)
T ss_dssp HHHHHHTCEEEEECCCHHHHT
T ss_pred HHHHHCCCCEEEEEECHHHHH
T ss_conf 888623761378652023332
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.24 E-value=0.01 Score=34.38 Aligned_cols=121 Identities=17% Similarity=0.177 Sum_probs=66.4
Q ss_pred CCCCCEEEEECCCEEEEEECCCCCHHHHHHHHH--------CCC-CCCCCEEEECCEEEEECCCCCCCC-CCHHHHHHCC
Q ss_conf 411311786288099998137863999999983--------798-798758998494799926775667-5588997219
Q 000452 635 TLKDINLKVFHGMRVAVCGTVGSGKSSLLSCIL--------GEV-PKISGTLKLCGTKAYVAQSPWIQS-GKIEDNILFG 704 (1495)
Q Consensus 635 ~L~~inl~i~~G~~vaIvG~~GSGKStLl~~il--------Ge~-~~~~G~i~i~g~~ayv~Q~pwi~~-gTIreNIlfG 704 (1495)
+=.|+++. +.+....|+||+.|||||+++.+. |.+ +..+.++.+.. .|+. -...|++.-|
T Consensus 31 VpNdi~l~-~~~~~~iiTGpN~~GKSt~lk~i~l~~~laq~G~~VpA~~a~~~~~d---------~I~~~~~~~d~~~~~ 100 (234)
T d1wb9a2 31 IANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPID---------RIFTRVGAADDLASG 100 (234)
T ss_dssp CCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCC---------EEEEEEC--------
T ss_pred CCEEEEEC-CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEECCCEECCCCH---------HHEEEECCCCCCCCC
T ss_conf 64057988-99539999546731368999987999999872976741766613442---------023487467534365
Q ss_pred CC-CCH--HHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHH
Q ss_conf 98-999--999999998192888863478986401479886664799999999986039978674286776698889999
Q 000452 705 KE-MDR--ERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHL 781 (1495)
Q Consensus 705 ~~-~d~--~~y~~vi~ac~L~~Dl~~lp~Gd~T~IGe~G~nLSGGQKqRIaLARAly~~adI~LLDDp~SalD~~t~~~i 781 (1495)
.- |.. .+..++++. -.+..++|+||++++-++.-+..+
T Consensus 101 ~S~F~~E~~~~~~il~~---------------------------------------~~~~sLvliDE~~~gT~~~eg~~l 141 (234)
T d1wb9a2 101 RSTFMVEMTETANILHN---------------------------------------ATEYSLVLMDEIGRGTSTYDGLSL 141 (234)
T ss_dssp ---CHHHHHHHHHHHHH---------------------------------------CCTTEEEEEESCCCCSSSSHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---------------------------------------CCCCCEEEECCCCCCCCHHHHHHH
T ss_conf 31899999999999974---------------------------------------546608853222358774566678
Q ss_pred HHHHHHHHH-CC-CEEEEEECCCCC
Q ss_conf 999998875-89-779998057774
Q 000452 782 FKEVLLGLL-NS-KTVLYVTHQVEF 804 (1495)
Q Consensus 782 f~~~i~~~l-~~-kTvIlvTH~~~~ 804 (1495)
....+..+. +. ..+++.||..+.
T Consensus 142 ~~a~l~~l~~~~~~~~i~tTH~~~l 166 (234)
T d1wb9a2 142 AWACAENLANKIKALTLFATHYFEL 166 (234)
T ss_dssp HHHHHHHHHHTTCCEEEEECSCGGG
T ss_pred HHHHHHHHHCCCCCEEEEECCHHHH
T ss_conf 9876454320454428985246877
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=95.94 E-value=0.022 Score=31.57 Aligned_cols=114 Identities=21% Similarity=0.131 Sum_probs=70.8
Q ss_pred ECCCEEEEEECCCCCHHHHHHHHHCCCCCCCCE-EEECCEEEEECCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHCCH
Q ss_conf 288099998137863999999983798798758-9984947999267756675588997219989999999999981928
Q 000452 644 FHGMRVAVCGTVGSGKSSLLSCILGEVPKISGT-LKLCGTKAYVAQSPWIQSGKIEDNILFGKEMDRERYNAVLDACSLE 722 (1495)
Q Consensus 644 ~~G~~vaIvG~~GSGKStLl~~ilGe~~~~~G~-i~i~g~~ayv~Q~pwi~~gTIreNIlfG~~~d~~~y~~vi~ac~L~ 722 (1495)
.++.++.|+||+||||||.+.+++.+++..... +.+...+-|.-
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiEdPiE~~~----------------------------------- 200 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDI----------------------------------- 200 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCC-----------------------------------
T ss_pred HHHCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCC-----------------------------------
T ss_conf 410548987678777447799986662578746999626743456-----------------------------------
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 88863478986401479886664799999999986039978674286776698889999999998875897799980577
Q 000452 723 KDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQV 802 (1495)
Q Consensus 723 ~Dl~~lp~Gd~T~IGe~G~nLSGGQKqRIaLARAly~~adI~LLDDp~SalD~~t~~~if~~~i~~~l~~kTvIlvTH~~ 802 (1495)
|+--++++.+ ..|+..--+|..++-+||||++.+|.- |+.|++..++ ....|..|+-.-|--
T Consensus 201 ------~~~~q~~v~~-----~~~~~~~~~l~~~lR~dPDvi~igEiR---d~~ta~~a~~----aa~tGhlV~tTlHa~ 262 (401)
T d1p9ra_ 201 ------DGIGQTQVNP-----RVDMTFARGLRAILRQDPDVVMVGEIR---DLETAQIAVQ----ASLTGHLVMSTLHTN 262 (401)
T ss_dssp ------SSSEEEECBG-----GGTBCHHHHHHHHGGGCCSEEEESCCC---SHHHHHHHHH----HHHTTCEEEEEECCS
T ss_pred ------CCCCEEEECC-----CCCCCHHHHHHHHHHHCCCEEEECCCC---CHHHHHHHHH----HHHCCCEEEEEECCC
T ss_conf ------7887026558-----767799999999984138889845768---7599999999----972498589983367
Q ss_pred CCCCCCCE
Q ss_conf 74235878
Q 000452 803 EFLPAADL 810 (1495)
Q Consensus 803 ~~l~~aD~ 810 (1495)
+-....++
T Consensus 263 ~a~~~~~R 270 (401)
T d1p9ra_ 263 TAVGAVTR 270 (401)
T ss_dssp SSHHHHHH
T ss_pred CHHHHHHH
T ss_conf 66766543
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.45 E-value=0.044 Score=29.16 Aligned_cols=155 Identities=12% Similarity=0.075 Sum_probs=75.5
Q ss_pred CCCCCEEE--EECCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEECCCCCCCCCCHHHHHHCCCCCCHHHH
Q ss_conf 41131178--6288099998137863999999983798798758998494799926775667558899721998999999
Q 000452 635 TLKDINLK--VFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMDRERY 712 (1495)
Q Consensus 635 ~L~~inl~--i~~G~~vaIvG~~GSGKStLl~~ilGe~~~~~G~i~i~g~~ayv~Q~pwi~~gTIreNIlfG~~~d~~~y 712 (1495)
.|+++ +. +++|.++.|.|+.|||||+|..-++-......+ .+.|++-+ .+.+.+
T Consensus 14 ~LD~~-l~GGi~~gsl~li~G~pGsGKT~l~~qia~~~~~~~~------~~~~is~e-----------------~~~~~~ 69 (242)
T d1tf7a2 14 RLDEM-CGGGFFKDSIILATGATGTGKTLLVSRFVENACANKE------RAILFAYE-----------------ESRAQL 69 (242)
T ss_dssp HHHHH-TTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTC------CEEEEESS-----------------SCHHHH
T ss_pred HHHHH-HCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCC------CCCEEECC-----------------CCHHHH
T ss_conf 79884-5689869849999918999999999999999987232------44112126-----------------799999
Q ss_pred HHHHHHHCCHHHHHH-CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCCCEEEECCCCCCC---CHHHHHHHHHHHHH
Q ss_conf 999998192888863-4789864014798866647999999999860-399786742867766---98889999999998
Q 000452 713 NAVLDACSLEKDLEI-LSFGDQTVVGERGINLSGGQKQRIQIARALY-QDADIYLFDDPFSAV---DAHTGSHLFKEVLL 787 (1495)
Q Consensus 713 ~~vi~ac~L~~Dl~~-lp~Gd~T~IGe~G~nLSGGQKqRIaLARAly-~~adI~LLDDp~Sal---D~~t~~~if~~~i~ 787 (1495)
.+-.+.... |.+. ...|............. .+...-.+.+++. .++++.+.|...... +...-.........
T Consensus 70 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~i~~~~~~~vviDs~~~~~~~~~~~~~~~~~~~l~~ 146 (242)
T d1tf7a2 70 LRNAYSWGM--DFEEMERQNLLKIVCAYPESAG-LEDHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVIGVTG 146 (242)
T ss_dssp HHHHHTTSC--CHHHHHHTTSEEECCCCGGGSC-HHHHHHHHHHHHHTTCCSEEEEECHHHHTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHCCC--CHHHHHHCCCEEEEEEECCHHH-HHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCHHHHHHHHHHHHH
T ss_conf 999998299--8699854586179973000101-7999999999998408853322043143048999999999999999
Q ss_pred HH-HCCCEEEEEECCCC----------CC-CCCCEEEEEEC
Q ss_conf 87-58977999805777----------42-35878999929
Q 000452 788 GL-LNSKTVLYVTHQVE----------FL-PAADLVLVIKD 816 (1495)
Q Consensus 788 ~~-l~~kTvIlvTH~~~----------~l-~~aD~Iivl~~ 816 (1495)
.. ..+.|++++.|.-. .+ ..||-++.++.
T Consensus 147 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~~ 187 (242)
T d1tf7a2 147 YAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQY 187 (242)
T ss_dssp HHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEE
T ss_pred HHHHCCCEEEEEEEEEEECCCCCCCCCCEEEECCEEEEEEE
T ss_conf 99986983999985675125544577640464216999998
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.25 E-value=0.011 Score=34.03 Aligned_cols=25 Identities=36% Similarity=0.630 Sum_probs=21.2
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 8099998137863999999983798
Q 000452 646 GMRVAVCGTVGSGKSSLLSCILGEV 670 (1495)
Q Consensus 646 G~~vaIvG~~GSGKStLl~~ilGe~ 670 (1495)
+=++||+|.+|+|||||+++++|.-
T Consensus 8 ~~kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 8 AIKVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTST
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 8889999999999999999997787
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=95.17 E-value=0.076 Score=27.14 Aligned_cols=142 Identities=14% Similarity=0.172 Sum_probs=62.0
Q ss_pred EECCCEEEEEECCCCCHHHHHHHHHCCC----CCCCCEEEECCEEEEECCCCCCCCCCHHHHH-HCCCCCCHHHHHHHHH
Q ss_conf 6288099998137863999999983798----7987589984947999267756675588997-2199899999999999
Q 000452 643 VFHGMRVAVCGTVGSGKSSLLSCILGEV----PKISGTLKLCGTKAYVAQSPWIQSGKIEDNI-LFGKEMDRERYNAVLD 717 (1495)
Q Consensus 643 i~~G~~vaIvG~~GSGKStLl~~ilGe~----~~~~G~i~i~g~~ayv~Q~pwi~~gTIreNI-lfG~~~d~~~y~~vi~ 717 (1495)
+.+|+++.|+|+.|+|||+|+..+.--+ +...+...-.+.+.|+.-+-. ...+++.+ ..+..++.+.+.....
T Consensus 26 ~~pg~~~~i~G~~G~GKS~l~l~la~~ia~g~~~~~~~~~~~~~vl~~~~E~~--~~~~~~Rl~~~~~~~~~~~~~~~~~ 103 (274)
T d1nlfa_ 26 MVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDP--PTAIHHRLHALGAHLSAEERQAVAD 103 (274)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSC--HHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCH--HHHHHHHHHHHHHCCCHHHHHCCCC
T ss_conf 55895899992899989999999999997699721112357873689851234--9999999999862368666531233
Q ss_pred HHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCC-----CHHHHHHHHHHHHHHHH--
Q ss_conf 81928888634789864014798866647999999999860399786742867766-----98889999999998875--
Q 000452 718 ACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAV-----DAHTGSHLFKEVLLGLL-- 790 (1495)
Q Consensus 718 ac~L~~Dl~~lp~Gd~T~IGe~G~nLSGGQKqRIaLARAly~~adI~LLDDp~Sal-----D~~t~~~if~~~i~~~l-- 790 (1495)
. +...+. .+...... -....-.+. +...+++++++|-..... |......++.. +..+.
T Consensus 104 ~------~~~~~~-----~~~~~~~~--~~~~~~~~~-~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~-l~~la~~ 168 (274)
T d1nlfa_ 104 G------LLIQPL-----IGSLPNIM--APEWFDGLK-RAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGR-MEAIAAD 168 (274)
T ss_dssp H------EEECCC-----TTSCCCTT--SHHHHHHHH-HHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHH-HHHHHHH
T ss_pred C------CEECCC-----CCCCCHHH--HHHHHHHHH-HHCCCCCEEECCCHHHHCCCCCCCHHHHHHHHHH-HHHHHHC
T ss_conf 3------232145-----67420357--899999988-7526765896281354226652322568999988-7777644
Q ss_pred CCCEEEEEECC
Q ss_conf 89779998057
Q 000452 791 NSKTVLYVTHQ 801 (1495)
Q Consensus 791 ~~kTvIlvTH~ 801 (1495)
.+.+++++.|.
T Consensus 169 ~~~~vi~v~H~ 179 (274)
T d1nlfa_ 169 TGCSIVFLHHA 179 (274)
T ss_dssp HCCEEEEEEEC
T ss_pred CCCCEEHHHHC
T ss_conf 79754013100
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=94.81 E-value=0.093 Score=26.40 Aligned_cols=197 Identities=11% Similarity=0.081 Sum_probs=90.0
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 99998741999999866558999999996218974106785899994100016885089399999699989889999983
Q 000452 1217 ERIFQYTCIPSEPPLEIEESRPNHSWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLF 1296 (1495)
Q Consensus 1217 eRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~~~nv~~~Y~~~~~~vL~~is~~i~~GekigIVGrTGSGKSTLl~~L~ 1296 (1495)
||+.++.+-+.+.. .-+..||. |+.+.-=+.+|+.+-|.|++|+||||++.-+.
T Consensus 3 e~~~~~~~~~~~~~------~i~TG~~~--------------------lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la 56 (277)
T d1cr2a_ 3 ERIREHLSSEESVG------LLFSGCTG--------------------INDKTLGARGGEVIMVTSGSGMGKSTFVRQQA 56 (277)
T ss_dssp HHHHHHHTSCCCSC------BCCCSCTT--------------------HHHHHCSBCTTCEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHHHHCCCCCC------CCCCCCHH--------------------HHHHHCCCCCCEEEEEEECCCCCHHHHHHHHH
T ss_conf 89999984788745------56788366--------------------88874697898089999479997999999999
Q ss_pred C-CCCCCCCEEEECCEECCCCCHHHHHCCC-EEECCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHCCCCC
Q ss_conf 3-5669863799969738999977772243-8981567678775777049998999999999999839967897100886
Q 000452 1297 R-IVEPAAGQILIDGIDISLIGLHDLRTRL-SIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKL 1374 (1495)
Q Consensus 1297 r-l~ep~~G~I~IDG~dI~~i~l~~LR~~i-~iIpQdp~LF~GTIR~NLdp~~~~sD~eI~~aL~~~~L~~~i~~lp~gL 1374 (1495)
. +..-..-.+.+-. .+.+.+....|+ +...+-+.--..+.+ .+.++...+.++.......-
T Consensus 57 ~~~a~~~g~~v~~~s---~E~~~~~~~~r~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~ 119 (277)
T d1cr2a_ 57 LQWGTAMGKKVGLAM---LEESVEETAEDLIGLHNRVRLRQSDSLK--------------REIIENGKFDQWFDELFGND 119 (277)
T ss_dssp HHHHHTSCCCEEEEE---SSSCHHHHHHHHHHHHTTCCGGGCHHHH--------------HHHHHTSHHHHHHHHHHSSS
T ss_pred HHHHHHCCCCEEEEE---ECCCHHHHHHHHHHHHHCCCCHHHCCCC--------------CCHHHHHHHHHHHHHHHCCC
T ss_conf 726553366345764---0111135776999986458710101222--------------22145677888988740352
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHH--CCCCCEEEEECCC-----CCCCHH--HHHHHHHHHHHHC--CCCEEEEEECCC
Q ss_conf 5212269998890399999999987--2599869987588-----899999--8999999999856--992799870590
Q 000452 1375 DSKVTENGENWSMGQRQLVCLGRVL--LKRRKILMLDEAT-----ASVDTA--TDNLIQQSLRQHF--SDCTVITIAHRI 1443 (1495)
Q Consensus 1375 dt~v~e~G~nlS~GQrQll~LARAL--Lk~~~ILiLDEaT-----sslD~~--Te~~Iq~~Ir~~f--~~~TvI~IAHRl 1443 (1495)
.-.+.+........ .++...+.. -.+++++++|=-+ ..-+.. .-..+.+.+++.. .+|+|++++|=-
T Consensus 120 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~vi~~~q~~ 197 (277)
T d1cr2a_ 120 TFHLYDSFAEAETD--RLLAKLAYMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLK 197 (277)
T ss_dssp CEEEECCC-CCCHH--HHHHHHHHHHHTTCCSEEEEEEEEC----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC
T ss_pred EEEEECCCCCHHHH--HHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCC
T ss_conf 14662143310689--9999865432136762599705421203465443067789999999997650165520310356
Q ss_pred ----------------HHHH-------CCCEEEEEECC
Q ss_conf ----------------2230-------13989999384
Q 000452 1444 ----------------TSVI-------DSDMVLLLSHG 1458 (1495)
Q Consensus 1444 ----------------~ti~-------~~DrIlVLd~G 1458 (1495)
+.+. .+|.|+.+..-
T Consensus 198 r~~~~~~~~~~~~~~~~~~~gS~~i~~~ad~vl~l~r~ 235 (277)
T d1cr2a_ 198 NPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERN 235 (277)
T ss_dssp ---------------------CHHHHHHCSEEEEEECC
T ss_pred CCCCCCCCCCCCCCHHHHCCCCCCHHHHCCEEEEEEEC
T ss_conf 32244455433332112123430015038699999846
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.80 E-value=0.069 Score=27.50 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=19.8
Q ss_pred EEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 99981378639999999837987
Q 000452 649 VAVCGTVGSGKSSLLSCILGEVP 671 (1495)
Q Consensus 649 vaIvG~~GSGKStLl~~ilGe~~ 671 (1495)
+.++||.|+||||+.+++..++.
T Consensus 36 lll~Gp~G~GKTt~~~~la~~l~ 58 (252)
T d1sxje2 36 LLLYGPNGTGKKTRCMALLESIF 58 (252)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99889999988999999997622
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.77 E-value=0.014 Score=33.34 Aligned_cols=29 Identities=41% Similarity=0.574 Sum_probs=23.9
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf 99998137863999999983798798758
Q 000452 648 RVAVCGTVGSGKSSLLSCILGEVPKISGT 676 (1495)
Q Consensus 648 ~vaIvG~~GSGKStLl~~ilGe~~~~~G~ 676 (1495)
.+||+|++|+|||||+++|+|.-....|.
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~~~~~~~ 86 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIGNEEEGA 86 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCC
T ss_conf 79998999997899999995888677756
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=94.76 E-value=0.087 Score=26.64 Aligned_cols=25 Identities=40% Similarity=0.583 Sum_probs=21.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8939999969998988999998335
Q 000452 1274 GEKKTGIVGRTGSGKSTLIQTLFRI 1298 (1495)
Q Consensus 1274 ~GekigIVGrTGSGKSTLl~~L~rl 1298 (1495)
.+=+|||+|++|+|||||+++|++-
T Consensus 7 ~~~kV~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 7 DAIKVAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 8888999999999999999999778
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.67 E-value=0.016 Score=32.83 Aligned_cols=33 Identities=30% Similarity=0.355 Sum_probs=22.9
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEE
Q ss_conf 880999981378639999999837987987589
Q 000452 645 HGMRVAVCGTVGSGKSSLLSCILGEVPKISGTL 677 (1495)
Q Consensus 645 ~G~~vaIvG~~GSGKStLl~~ilGe~~~~~G~i 677 (1495)
+|+.++++|++|.|||||+++|+|+....-|.|
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~v 126 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEV 126 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC----
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHCCCC
T ss_conf 698089978898778888773053555010684
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.64 E-value=0.017 Score=32.55 Aligned_cols=34 Identities=21% Similarity=0.324 Sum_probs=28.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 8939999969998988999998335669863799
Q 000452 1274 GEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1307 (1495)
Q Consensus 1274 ~GekigIVGrTGSGKSTLl~~L~rl~ep~~G~I~ 1307 (1495)
+|+...++|.||.|||||+++|.+-.....|.|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHCCCCC
T ss_conf 6980899788987788887730535550106842
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.56 E-value=0.051 Score=28.61 Aligned_cols=28 Identities=25% Similarity=0.259 Sum_probs=24.2
Q ss_pred EEECCCEEEEEECCCCCHHHHHHHHHCC
Q ss_conf 8628809999813786399999998379
Q 000452 642 KVFHGMRVAVCGTVGSGKSSLLSCILGE 669 (1495)
Q Consensus 642 ~i~~G~~vaIvG~~GSGKStLl~~ilGe 669 (1495)
=+++|+.+.|.|+.|||||+|..-++-.
T Consensus 32 Glp~G~~~li~G~pGsGKT~~~lq~~~~ 59 (254)
T d1pzna2 32 GIETQAITEVFGEFGSGKTQLAHTLAVM 59 (254)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9558879999858989889999999998
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=94.47 E-value=0.027 Score=30.86 Aligned_cols=21 Identities=29% Similarity=0.385 Sum_probs=11.7
Q ss_pred EEEEEECCCCCHHHHHHHHHC
Q ss_conf 999981378639999999837
Q 000452 648 RVAVCGTVGSGKSSLLSCILG 668 (1495)
Q Consensus 648 ~vaIvG~~GSGKStLl~~ilG 668 (1495)
++.++|++||||||+.+.|..
T Consensus 4 lIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 4 IILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999989999999999999999
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=94.29 E-value=0.015 Score=33.09 Aligned_cols=23 Identities=43% Similarity=0.637 Sum_probs=21.5
Q ss_pred EEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 99998137863999999983798
Q 000452 648 RVAVCGTVGSGKSSLLSCILGEV 670 (1495)
Q Consensus 648 ~vaIvG~~GSGKStLl~~ilGe~ 670 (1495)
.++++|.+|+|||||+++|+|+-
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998999986999999985898
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=94.29 E-value=0.014 Score=33.42 Aligned_cols=23 Identities=26% Similarity=0.547 Sum_probs=20.9
Q ss_pred EEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 99998137863999999983798
Q 000452 648 RVAVCGTVGSGKSSLLSCILGEV 670 (1495)
Q Consensus 648 ~vaIvG~~GSGKStLl~~ilGe~ 670 (1495)
.++|+|++|+|||||+++|.|+-
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99998999987999999852987
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=94.26 E-value=0.016 Score=32.88 Aligned_cols=40 Identities=28% Similarity=0.359 Sum_probs=32.1
Q ss_pred EEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 6885089399999699989889999983356698637999
Q 000452 1269 SCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILI 1308 (1495)
Q Consensus 1269 s~~i~~GekigIVGrTGSGKSTLl~~L~rl~ep~~G~I~I 1308 (1495)
..-++.+..+-|+|+|||||||++++|++.++|..=-|.|
T Consensus 160 ~~~v~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivti 199 (323)
T d1g6oa_ 160 KDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI 199 (323)
T ss_dssp HHHHHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred HHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEEC
T ss_conf 9999837888999403566257899986530145623311
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=94.20 E-value=0.045 Score=29.06 Aligned_cols=32 Identities=31% Similarity=0.336 Sum_probs=23.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 39999969998988999998335669863799969
Q 000452 1276 KKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDG 1310 (1495)
Q Consensus 1276 ekigIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG 1310 (1495)
+.|.|+|.+||||||+++.|.+- ..|...++.
T Consensus 3 klIii~G~pGsGKTTla~~L~~~---~~~~~~~~~ 34 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAK---NPGFYNINR 34 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH---STTEEEECH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH---CCCCEEECH
T ss_conf 79999899999999999999995---799799603
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=94.09 E-value=0.13 Score=25.19 Aligned_cols=23 Identities=43% Similarity=0.586 Sum_probs=20.9
Q ss_pred EEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 99998137863999999983798
Q 000452 648 RVAVCGTVGSGKSSLLSCILGEV 670 (1495)
Q Consensus 648 ~vaIvG~~GSGKStLl~~ilGe~ 670 (1495)
.|+++|.+|+|||||++.++|.-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999999999999996888
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=94.02 E-value=0.076 Score=27.15 Aligned_cols=124 Identities=16% Similarity=0.171 Sum_probs=57.4
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEECCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHH
Q ss_conf 99998137863999999983798798758998494799926775667558899721998999999999998192888863
Q 000452 648 RVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMDRERYNAVLDACSLEKDLEI 727 (1495)
Q Consensus 648 ~vaIvG~~GSGKStLl~~ilGe~~~~~G~i~i~g~~ayv~Q~pwi~~gTIreNIlfG~~~d~~~y~~vi~ac~L~~Dl~~ 727 (1495)
-++|+|++|+|||||..+++......+ .. |++.+.... .+++++..++-+ .+..-...
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~----~~--------------g~v~~g~~~-~D~~~~E~~r~~---ti~~~~~~ 61 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKTGAKE----RR--------------GRVEEGTTT-TDYTPEAKLHRT---TVRTGVAP 61 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSSS----SC--------------CCGGGTCCS-SCCSHHHHHTTS---CCSCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCH----HH--------------CCCHHCCCC-CCCHHHHHHHCC---EEEEECCC
T ss_conf 999994889809999999999709755----30--------------662222113-562698887387---68751022
Q ss_pred CC--CCCCCCCCCCCCC-CCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 47--8986401479886-6647999999999860399786742867766988899999999988758977999805777
Q 000452 728 LS--FGDQTVVGERGIN-LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVE 803 (1495)
Q Consensus 728 lp--~Gd~T~IGe~G~n-LSGGQKqRIaLARAly~~adI~LLDDp~SalD~~t~~~if~~~i~~~l~~kTvIlvTH~~~ 803 (1495)
+. +---+.|.--|.. ++|.-..=+. ..|+-|++. |+..++-++|.+.+ +.+.. .+..++++-+.++
T Consensus 62 ~~~~~~~~n~iDtPGh~dF~~e~~~al~-----~~D~avlvv-da~~Gv~~~t~~~~-~~~~~---~~~p~~i~iNk~D 130 (267)
T d2dy1a2 62 LLFRGHRVFLLDAPGYGDFVGEIRGALE-----AADAALVAV-SAEAGVQVGTERAW-TVAER---LGLPRMVVVTKLD 130 (267)
T ss_dssp EEETTEEEEEEECCCSGGGHHHHHHHHH-----HCSEEEEEE-ETTTCSCHHHHHHH-HHHHH---TTCCEEEEEECGG
T ss_pred CCCCCCCEEEECCCCHHHHHHHHHHHHC-----CCCCEEEEE-ECCCCCCCHHHHHH-HHHHH---CCCCCCCCCCCCC
T ss_conf 2234321068806815543355654312-----467338984-23577421157887-76554---0443101333202
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=93.75 E-value=0.016 Score=32.74 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=17.0
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCC
Q ss_conf 9999813786399999998379879
Q 000452 648 RVAVCGTVGSGKSSLLSCILGEVPK 672 (1495)
Q Consensus 648 ~vaIvG~~GSGKStLl~~ilGe~~~ 672 (1495)
.++|+|+.|||||||++.|+.++..
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~ 28 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCA 28 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 8999918999899999999999997
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=93.69 E-value=0.029 Score=30.59 Aligned_cols=31 Identities=26% Similarity=0.347 Sum_probs=25.1
Q ss_pred EEEECCCEEEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 7862880999981378639999999837987
Q 000452 641 LKVFHGMRVAVCGTVGSGKSSLLSCILGEVP 671 (1495)
Q Consensus 641 l~i~~G~~vaIvG~~GSGKStLl~~ilGe~~ 671 (1495)
+.-++|..+.++|.+||||||+.+.|...+.
T Consensus 19 ~~~~kg~vIwltGlsGsGKTTia~~L~~~l~ 49 (208)
T d1m7ga_ 19 LRNQRGLTIWLTGLSASGKSTLAVELEHQLV 49 (208)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHCCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 8589986999989999998999999998877
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=93.59 E-value=0.013 Score=33.50 Aligned_cols=33 Identities=30% Similarity=0.399 Sum_probs=24.5
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEE
Q ss_conf 880999981378639999999837987987589
Q 000452 645 HGMRVAVCGTVGSGKSSLLSCILGEVPKISGTL 677 (1495)
Q Consensus 645 ~G~~vaIvG~~GSGKStLl~~ilGe~~~~~G~i 677 (1495)
+|+.++++|++|.|||||+++|+|+....-|.|
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~v 128 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEI 128 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC---------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHHCCC
T ss_conf 356499987787348789875151767640355
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=93.46 E-value=0.017 Score=32.60 Aligned_cols=27 Identities=26% Similarity=0.347 Sum_probs=23.7
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 880999981378639999999837987
Q 000452 645 HGMRVAVCGTVGSGKSSLLSCILGEVP 671 (1495)
Q Consensus 645 ~G~~vaIvG~~GSGKStLl~~ilGe~~ 671 (1495)
.|++++++|++||||||+.+.+..+..
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg 29 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPG 29 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 985999988999988999999999959
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.44 E-value=0.16 Score=24.34 Aligned_cols=26 Identities=27% Similarity=0.257 Sum_probs=20.9
Q ss_pred ECCCEEEEEECCCCCHHHHHHHHHCC
Q ss_conf 28809999813786399999998379
Q 000452 644 FHGMRVAVCGTVGSGKSSLLSCILGE 669 (1495)
Q Consensus 644 ~~G~~vaIvG~~GSGKStLl~~ilGe 669 (1495)
++.+++.++|+.||||||+.+.++..
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~~ 37 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLVS 37 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 99989999899999899999999976
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=93.41 E-value=0.074 Score=27.23 Aligned_cols=43 Identities=12% Similarity=0.275 Sum_probs=28.9
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEECCCCCCCC
Q ss_conf 99998137863999999983798798758998494799926775667
Q 000452 648 RVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQS 694 (1495)
Q Consensus 648 ~vaIvG~~GSGKStLl~~ilGe~~~~~G~i~i~g~~ayv~Q~pwi~~ 694 (1495)
+++|+|++||||||+.+.|-..+....+ .-++..++++-+...
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~~----~~~v~~Is~D~F~~~ 124 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWPE----HRRVELITTDGFLHP 124 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTT----CCCEEEEEGGGGBCC
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCC----CCCEEEEEEEEEECC
T ss_conf 9999689999876899999999730468----996599952156898
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=93.36 E-value=0.17 Score=24.25 Aligned_cols=31 Identities=29% Similarity=0.395 Sum_probs=24.2
Q ss_pred CCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 41000168850893999996999898899999833
Q 000452 1263 FVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFR 1297 (1495)
Q Consensus 1263 ~vL~~is~~i~~GekigIVGrTGSGKSTLl~~L~r 1297 (1495)
.++.|+ .||+.+-|+|++|+|||||+..|.-
T Consensus 21 ~li~G~----~pg~~~~i~G~~G~GKS~l~l~la~ 51 (274)
T d1nlfa_ 21 YVLPNM----VAGTVGALVSPGGAGKSMLALQLAA 51 (274)
T ss_dssp EEETTE----ETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHCCC----CCCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 986895----5895899992899989999999999
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=93.19 E-value=0.032 Score=30.24 Aligned_cols=76 Identities=4% Similarity=-0.002 Sum_probs=38.7
Q ss_pred CCHHHHHHHHHHHHCCCCCEEEEE-CCCCCCCHHHHH-HHHHHHHHHCCCCEEEEEECCCHHHHCCCEEEEEECCEEEE
Q ss_conf 903999999999872599869987-588899999899-99999998569927998705902230139899993848998
Q 000452 1386 SMGQRQLVCLGRVLLKRRKILMLD-EATASVDTATDN-LIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 1462 (1495)
Q Consensus 1386 S~GQrQll~LARALLk~~~ILiLD-EaTsslD~~Te~-~Iq~~Ir~~f~~~TvI~IAHRl~ti~~~DrIlVLd~G~IvE 1462 (1495)
...+......+...++++.+++++ .++.. +...+. ...+.++....++.+|++......+.+....--...-.+.+
T Consensus 64 ~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~iilv~NK~Dl~~~~~~~~~~~~~~~~~ 141 (161)
T d2gj8a1 64 DEVERIGIERAWQEIEQADRVLFMVDGTTT-DAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIR 141 (161)
T ss_dssp SHHHHHHHHHHHHHHHTCSEEEEEEETTTC-CCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCEEEEETTEEEEE
T ss_pred CCCHHHHHHHHHHHHHHCCCCCEEECCCCC-CCHHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 520247899999998741332011025654-203455544455542014101020465444335588798727996799
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.18 E-value=0.018 Score=32.45 Aligned_cols=28 Identities=29% Similarity=0.672 Sum_probs=23.8
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCC
Q ss_conf 8099998137863999999983798798
Q 000452 646 GMRVAVCGTVGSGKSSLLSCILGEVPKI 673 (1495)
Q Consensus 646 G~~vaIvG~~GSGKStLl~~ilGe~~~~ 673 (1495)
|++++++||+||||+|+.+.+..+++..
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~~ 29 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPNL 29 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTTC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 7499998999999999999998458997
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=93.08 E-value=0.17 Score=24.23 Aligned_cols=27 Identities=33% Similarity=0.442 Sum_probs=22.7
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 880999981378639999999837987
Q 000452 645 HGMRVAVCGTVGSGKSSLLSCILGEVP 671 (1495)
Q Consensus 645 ~G~~vaIvG~~GSGKStLl~~ilGe~~ 671 (1495)
+..-+.+.||.|||||++.+++..++.
T Consensus 44 ~~~~iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 44 IPKGVLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHCC
T ss_conf 888678668998882289999999829
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=93.02 E-value=0.12 Score=25.34 Aligned_cols=60 Identities=15% Similarity=0.237 Sum_probs=36.3
Q ss_pred ECCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEECCCCCCCCCCHHHHHHCCCCCCHHHHHHH
Q ss_conf 288099998137863999999983798798758998494799926775667558899721998999999999
Q 000452 644 FHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMDRERYNAV 715 (1495)
Q Consensus 644 ~~G~~vaIvG~~GSGKStLl~~ilGe~~~~~G~i~i~g~~ayv~Q~pwi~~gTIreNIlfG~~~d~~~y~~v 715 (1495)
+.+.++.++|++||||||+.+.|...+.. ..+ ...++...........+.++..+.....
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l~~----~~~--------~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQLHA----AFL--------DGDFLHPRRNIEKMASGEPLNDDDRKPW 63 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHTC----EEE--------EGGGGCCHHHHHHHHTTCCCCHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHCC----CEE--------CHHHHHHHHHHHHHCCCCCEEHHHHHHH
T ss_conf 98718999899998989999999998697----831--------0366459988530024763001134778
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=93.01 E-value=0.031 Score=30.41 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=20.9
Q ss_pred EEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 99998137863999999983798
Q 000452 648 RVAVCGTVGSGKSSLLSCILGEV 670 (1495)
Q Consensus 648 ~vaIvG~~GSGKStLl~~ilGe~ 670 (1495)
.++++|++|+|||||+++|.|+-
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999988999999996898
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=92.99 E-value=0.026 Score=31.08 Aligned_cols=29 Identities=31% Similarity=0.403 Sum_probs=23.9
Q ss_pred ECCCEEEEEECCCCCHHHHHHHHHCCCCC
Q ss_conf 28809999813786399999998379879
Q 000452 644 FHGMRVAVCGTVGSGKSSLLSCILGEVPK 672 (1495)
Q Consensus 644 ~~G~~vaIvG~~GSGKStLl~~ilGe~~~ 672 (1495)
.+.-.++|+|+.|+|||||+..+...+..
T Consensus 52 ~~~~~IgitG~pGaGKSTLi~~l~~~~~~ 80 (327)
T d2p67a1 52 GNTLRLGVTGTPGAGKSTFLEAFGMLLIR 80 (327)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 98328974389999899999999999975
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=92.94 E-value=0.19 Score=23.78 Aligned_cols=27 Identities=26% Similarity=0.377 Sum_probs=23.5
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 508939999969998988999998335
Q 000452 1272 FPGEKKTGIVGRTGSGKSTLIQTLFRI 1298 (1495)
Q Consensus 1272 i~~GekigIVGrTGSGKSTLl~~L~rl 1298 (1495)
+++|..+-|.|++|+|||++..-+..-
T Consensus 23 i~~gsl~li~G~pGsGKT~l~~qia~~ 49 (242)
T d1tf7a2 23 FFKDSIILATGATGTGKTLLVSRFVEN 49 (242)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 869849999918999999999999999
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.90 E-value=0.03 Score=30.49 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=10.7
Q ss_pred EEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 99981378639999999837987
Q 000452 649 VAVCGTVGSGKSSLLSCILGEVP 671 (1495)
Q Consensus 649 vaIvG~~GSGKStLl~~ilGe~~ 671 (1495)
++|+|..|||||||+..++.++.
T Consensus 4 i~I~G~~gSGKTTli~~l~~~L~ 26 (165)
T d1xjca_ 4 WQVVGYKHSGKTTLMEKWVAAAV 26 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHH
T ss_conf 99980999989999999999998
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=92.82 E-value=0.026 Score=31.00 Aligned_cols=22 Identities=36% Similarity=0.493 Sum_probs=18.0
Q ss_pred EEEEEECCCCCHHHHHHHHHCC
Q ss_conf 9999813786399999998379
Q 000452 648 RVAVCGTVGSGKSSLLSCILGE 669 (1495)
Q Consensus 648 ~vaIvG~~GSGKStLl~~ilGe 669 (1495)
-|||+|+.++|||||+++|.|.
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 6999899998799999999689
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.73 E-value=0.2 Score=23.57 Aligned_cols=88 Identities=17% Similarity=0.141 Sum_probs=51.4
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEEECCCCCCCCCCHHHHCCCCCCCCHH
Q ss_conf 08939999969998988999998335669863799969738999977772243898156767877577704999899999
Q 000452 1273 PGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDE 1352 (1495)
Q Consensus 1273 ~~GekigIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~GTIR~NLdp~~~~sD~ 1352 (1495)
+.-+.|-++|..||||||+++.|+.- .|.+.|+. +++++ -+
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~~----~~~~~i~~--------D~~~~---------------------------~~ 52 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLVS----AGYVHVNR--------DTLGS---------------------------WQ 52 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTGG----GTCEEEEH--------HHHCS---------------------------HH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH----CCCEEECH--------HHHHH---------------------------HH
T ss_conf 99989999899999899999999976----59789760--------77778---------------------------88
Q ss_pred HHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHH-HHHHHHHCCCCCEEEEE
Q ss_conf 9999999839967897100886521226999889039999-99999872599869987
Q 000452 1353 QIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQL-VCLGRVLLKRRKILMLD 1409 (1495)
Q Consensus 1353 eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nlS~GQrQl-l~LARALLk~~~ILiLD 1409 (1495)
++.+.++. .+..|.+..+ ++.|++..+|+. +.+||-.=-+..++.+|
T Consensus 53 ~~~~~~~~--------~l~~g~~vIi--D~t~~~~~~R~~~~~~a~~~~~~~~~v~l~ 100 (172)
T d1yj5a2 53 RCVSSCQA--------ALRQGKRVVI--DNTNPDVPSRARYIQCAKDAGVPCRCFNFC 100 (172)
T ss_dssp HHHHHHHH--------HHHTTCCEEE--ESCCCSHHHHHHHHHHHHHHTCCEEEEEEC
T ss_pred HHHHHHHH--------HHHCCCCCEE--ECCCCCHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 99999999--------9977999555--176799999999999998558887999948
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.62 E-value=0.02 Score=31.95 Aligned_cols=27 Identities=22% Similarity=0.326 Sum_probs=23.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 939999969998988999998335669
Q 000452 1275 EKKTGIVGRTGSGKSTLIQTLFRIVEP 1301 (1495)
Q Consensus 1275 GekigIVGrTGSGKSTLl~~L~rl~ep 1301 (1495)
|..|.|+||+|||||||++.|..-++.
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~ 28 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPN 28 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 749999899999999999999845899
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=92.53 E-value=0.049 Score=28.74 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=21.4
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 999981378639999999837987
Q 000452 648 RVAVCGTVGSGKSSLLSCILGEVP 671 (1495)
Q Consensus 648 ~vaIvG~~GSGKStLl~~ilGe~~ 671 (1495)
.++++|+.|+|||||++.++|...
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~~ 25 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKKK 25 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC---
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 899999999989999999967775
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.53 E-value=0.042 Score=29.32 Aligned_cols=25 Identities=20% Similarity=0.310 Sum_probs=20.3
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 0999981378639999999837987
Q 000452 647 MRVAVCGTVGSGKSSLLSCILGEVP 671 (1495)
Q Consensus 647 ~~vaIvG~~GSGKStLl~~ilGe~~ 671 (1495)
-+++|.|++|||||||.+.|.-.+.
T Consensus 23 ~iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 23 LVLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 8999789887899999999999836
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=92.43 E-value=0.03 Score=30.50 Aligned_cols=22 Identities=36% Similarity=0.487 Sum_probs=19.7
Q ss_pred EEEEECCCCCHHHHHHHHHCCC
Q ss_conf 9998137863999999983798
Q 000452 649 VAVCGTVGSGKSSLLSCILGEV 670 (1495)
Q Consensus 649 vaIvG~~GSGKStLl~~ilGe~ 670 (1495)
||++|.+|+|||||++.|.|+-
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998999998999999996899
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=92.40 E-value=0.049 Score=28.71 Aligned_cols=22 Identities=41% Similarity=0.668 Sum_probs=19.3
Q ss_pred EEEEEECCCCCHHHHHHHHHCC
Q ss_conf 9999813786399999998379
Q 000452 648 RVAVCGTVGSGKSSLLSCILGE 669 (1495)
Q Consensus 648 ~vaIvG~~GSGKStLl~~ilGe 669 (1495)
.|+++|.+|+|||||++++.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999979999899999999589
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.37 E-value=0.014 Score=33.18 Aligned_cols=33 Identities=18% Similarity=0.178 Sum_probs=26.8
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 099998137863999999983798798758998
Q 000452 647 MRVAVCGTVGSGKSSLLSCILGEVPKISGTLKL 679 (1495)
Q Consensus 647 ~~vaIvG~~GSGKStLl~~ilGe~~~~~G~i~i 679 (1495)
+.+.|+|+.|+|||||++.+..++....+.+.+
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~ 34 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDG 34 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHTTCCCEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEE
T ss_conf 699998899971999999999999977997999
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.37 E-value=0.043 Score=29.17 Aligned_cols=44 Identities=20% Similarity=0.192 Sum_probs=27.5
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEECCCCCC
Q ss_conf 999981378639999999837987987589984947999267756
Q 000452 648 RVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWI 692 (1495)
Q Consensus 648 ~vaIvG~~GSGKStLl~~ilGe~~~~~G~i~i~g~~ayv~Q~pwi 692 (1495)
++||.|++||||||+.+.|...+....... ..-.+..++++-|-
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~~~~~~-~~~~~~vi~~D~yy 47 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQNEVDY-RQKQVVILSQDSFY 47 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGGGSCG-GGCSEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCHHCCCC-CCCCEEEEECCCCC
T ss_conf 999989997879999999999964101345-78843999346532
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=92.35 E-value=0.082 Score=26.86 Aligned_cols=35 Identities=23% Similarity=0.293 Sum_probs=29.5
Q ss_pred EEECCCEEEEEECCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf 86288099998137863999999983798798758
Q 000452 642 KVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGT 676 (1495)
Q Consensus 642 ~i~~G~~vaIvG~~GSGKStLl~~ilGe~~~~~G~ 676 (1495)
-+++|..+.+.|+.|||||+|...+.....+..|.
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~ 84 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKT 84 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCC
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 96673589980577747899999999998708987
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=92.27 E-value=0.064 Score=27.74 Aligned_cols=33 Identities=24% Similarity=0.254 Sum_probs=26.4
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf 089399999699989889999983356698637
Q 000452 1273 PGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQ 1305 (1495)
Q Consensus 1273 ~~GekigIVGrTGSGKSTLl~~L~rl~ep~~G~ 1305 (1495)
.++--|-|.|+|||||||.+.++++.......+
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~ 188 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERN 188 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSC
T ss_pred HHHCEEEEECCCCCCCCHHHHHHHHHHCCCCCE
T ss_conf 410548987678777447799986662578746
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=92.21 E-value=0.026 Score=31.06 Aligned_cols=23 Identities=35% Similarity=0.479 Sum_probs=14.8
Q ss_pred EEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 99998137863999999983798
Q 000452 648 RVAVCGTVGSGKSSLLSCILGEV 670 (1495)
Q Consensus 648 ~vaIvG~~GSGKStLl~~ilGe~ 670 (1495)
.++++|.+++|||||+++|.|.-
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998899998999999985898
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=92.18 E-value=0.061 Score=27.91 Aligned_cols=28 Identities=32% Similarity=0.578 Sum_probs=24.3
Q ss_pred ECCCEEEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 2880999981378639999999837987
Q 000452 644 FHGMRVAVCGTVGSGKSSLLSCILGEVP 671 (1495)
Q Consensus 644 ~~G~~vaIvG~~GSGKStLl~~ilGe~~ 671 (1495)
|+|..++|+|+.||||||+.+.|-..+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 9988899982899988999999999858
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=92.16 E-value=0.076 Score=27.15 Aligned_cols=35 Identities=26% Similarity=0.371 Sum_probs=27.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 8939999969998988999998335669863799969
Q 000452 1274 GEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDG 1310 (1495)
Q Consensus 1274 ~GekigIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG 1310 (1495)
+|+.|.|+|++||||||+.+.|.+-... --+.+|+
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg~--~~~~~~~ 37 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPGV--PKVHFHS 37 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSS--CEEEECT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCC--CEEEECH
T ss_conf 9859999889999889999999999599--9799068
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=91.90 E-value=0.046 Score=28.99 Aligned_cols=24 Identities=33% Similarity=0.379 Sum_probs=20.8
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 099998137863999999983798
Q 000452 647 MRVAVCGTVGSGKSSLLSCILGEV 670 (1495)
Q Consensus 647 ~~vaIvG~~GSGKStLl~~ilGe~ 670 (1495)
+.++|+|+.|||||||.+.|...+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 289998999998999999999984
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=91.88 E-value=0.047 Score=28.90 Aligned_cols=66 Identities=18% Similarity=0.401 Sum_probs=39.4
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEECCCCCCCCCCHHHHHHCCCC---CCHHHHHHHHHHHCC
Q ss_conf 88099998137863999999983798798758998494799926775667558899721998---999999999998192
Q 000452 645 HGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKE---MDRERYNAVLDACSL 721 (1495)
Q Consensus 645 ~G~~vaIvG~~GSGKStLl~~ilGe~~~~~G~i~i~g~~ayv~Q~pwi~~gTIreNIlfG~~---~d~~~y~~vi~ac~L 721 (1495)
.|.+++|+||+|+||+||.+.++-+.+...-.. .+.|..-.| |++=.-|.+ .+++..++-+++=.+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p~~~~~~----~is~TTR~~-------R~~E~~G~dY~Fvs~~~F~~~i~~g~f 69 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQV----SVSHTTRQP-------RPGEVHGEHYFFVNHDEFKEMISRDAF 69 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEE----CCCEECSCC-------CTTCCBTTTBEECCHHHHHHHHHTTCE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEE----EEEEECCCC-------CCCCCCCCCCEEECHHHHHHHHHHHHH
T ss_conf 980999999999999999999986398668427----888763678-------865543212334328999987542111
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.77 E-value=0.095 Score=26.30 Aligned_cols=42 Identities=12% Similarity=0.275 Sum_probs=20.3
Q ss_pred CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 03997867428677669888999999999887589779998057774
Q 000452 758 YQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEF 804 (1495)
Q Consensus 758 y~~adI~LLDDp~SalD~~t~~~if~~~i~~~l~~kTvIlvTH~~~~ 804 (1495)
..+.|++|+|-.- ... .....+.+.+ . ..+|-+++|-+..+.
T Consensus 133 ~~~~d~~l~~~~~-~~~-~~d~~l~~~l-~--~~~k~~~~V~nK~D~ 174 (400)
T d1tq4a_ 133 FYEYDFFIIISAT-RFK-KNDIDIAKAI-S--MMKKEFYFVRTKVDS 174 (400)
T ss_dssp GGGCSEEEEEESS-CCC-HHHHHHHHHH-H--HTTCEEEEEECCHHH
T ss_pred HHCCEEEEEECCC-CCC-HHHHHHHHHH-H--HCCCCEEEEEECCCC
T ss_conf 3226599996588-887-8899999999-9--769987999708632
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=91.74 E-value=0.055 Score=28.28 Aligned_cols=27 Identities=30% Similarity=0.391 Sum_probs=23.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 893999996999898899999833566
Q 000452 1274 GEKKTGIVGRTGSGKSTLIQTLFRIVE 1300 (1495)
Q Consensus 1274 ~GekigIVGrTGSGKSTLl~~L~rl~e 1300 (1495)
.|..+-|+|||||||+||.+.|+.-.+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 980999999999999999999986398
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=91.71 E-value=0.048 Score=28.81 Aligned_cols=22 Identities=32% Similarity=0.619 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999969998988999998335
Q 000452 1277 KTGIVGRTGSGKSTLIQTLFRI 1298 (1495)
Q Consensus 1277 kigIVGrTGSGKSTLl~~L~rl 1298 (1495)
+|+|||++|+|||||++.|.|.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHCCC
T ss_conf 9999899998799999985298
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=91.71 E-value=0.046 Score=28.92 Aligned_cols=69 Identities=19% Similarity=0.256 Sum_probs=43.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEEECCCCCCCCCCHHHH--CCC-C---CCCC
Q ss_conf 999996999898899999833566986379996973899997777224389815676787757770--499-9---8999
Q 000452 1277 KTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSIIPQDPVMFEGTVRSN--VDP-L---EEYT 1350 (1495)
Q Consensus 1277 kigIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~GTIR~N--Ldp-~---~~~s 1350 (1495)
.|||.|.+||||||+.+.|..+..-..+ ..++.+|++|.+..+...++. +.. + +.++
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~~-----------------~~~v~~Is~D~F~~~~~~l~~~~~~~~~g~Pes~D 144 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWPE-----------------HRRVELITTDGFLHPNQVLKERGLMKKKGFPESYD 144 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTT-----------------CCCEEEEEGGGGBCCHHHHHHHTCTTCTTSGGGBC
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCC-----------------CCCEEEEEEEEEECCCHHHHHHCCCCCCCCHHHHH
T ss_conf 9999689999876899999999730468-----------------99659995215689845888836876688167631
Q ss_pred HHHHHHHHHHCC
Q ss_conf 999999999839
Q 000452 1351 DEQIWEALDKCQ 1362 (1495)
Q Consensus 1351 D~eI~~aL~~~~ 1362 (1495)
-+.+.+.+....
T Consensus 145 ~~~L~~~L~~lk 156 (308)
T d1sq5a_ 145 MHRLVKFVSDLK 156 (308)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999997
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=91.70 E-value=0.02 Score=32.04 Aligned_cols=52 Identities=25% Similarity=0.249 Sum_probs=36.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEEEC
Q ss_conf 89399999699989889999983356698637999697389999777722438981
Q 000452 1274 GEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSIIP 1329 (1495)
Q Consensus 1274 ~GekigIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIp 1329 (1495)
+|++..++|.||.|||||+++|.+-.....|.|.-. ..-|.|.-|.+--+-+
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~----~~rGrHTTt~~~l~~~ 147 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEH----LGRGKHTTRHVELIHT 147 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-----------------------CCCCCEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHHCCCCCC----CCCCCEEEEEEEEEEC
T ss_conf 356499987787348789875151767640355533----5897124434788862
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=91.60 E-value=0.068 Score=27.53 Aligned_cols=28 Identities=18% Similarity=0.358 Sum_probs=23.3
Q ss_pred ECCCEEEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 2880999981378639999999837987
Q 000452 644 FHGMRVAVCGTVGSGKSSLLSCILGEVP 671 (1495)
Q Consensus 644 ~~G~~vaIvG~~GSGKStLl~~ilGe~~ 671 (1495)
++|..+.++|.+||||||+.++|...+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9976999889999999999999999986
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=91.46 E-value=0.069 Score=27.47 Aligned_cols=22 Identities=18% Similarity=0.410 Sum_probs=19.7
Q ss_pred EEEEEECCCCCHHHHHHHHHCC
Q ss_conf 9999813786399999998379
Q 000452 648 RVAVCGTVGSGKSSLLSCILGE 669 (1495)
Q Consensus 648 ~vaIvG~~GSGKStLl~~ilGe 669 (1495)
.+||+|.+++|||||+++|+|.
T Consensus 7 nIaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 7 NLGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 9999907787099999999974
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=91.23 E-value=0.081 Score=26.89 Aligned_cols=28 Identities=21% Similarity=0.425 Sum_probs=25.0
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 0893999996999898899999833566
Q 000452 1273 PGEKKTGIVGRTGSGKSTLIQTLFRIVE 1300 (1495)
Q Consensus 1273 ~~GekigIVGrTGSGKSTLl~~L~rl~e 1300 (1495)
|+|-+|.|.|++||||||+.+.|..-+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 9988899982899988999999999858
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=91.16 E-value=0.062 Score=27.88 Aligned_cols=28 Identities=18% Similarity=0.224 Sum_probs=23.4
Q ss_pred ECCCEEEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 2880999981378639999999837987
Q 000452 644 FHGMRVAVCGTVGSGKSSLLSCILGEVP 671 (1495)
Q Consensus 644 ~~G~~vaIvG~~GSGKStLl~~ilGe~~ 671 (1495)
++.-+++++|+.|+|||||++.+.+...
T Consensus 11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~ 38 (186)
T d1f6ba_ 11 KKTGKLVFLGLDNAGKTTLLHMLKDDRL 38 (186)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC--
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 7777899999999898999999967887
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.06 E-value=0.22 Score=23.21 Aligned_cols=22 Identities=50% Similarity=0.594 Sum_probs=19.5
Q ss_pred EEEEEECCCCCHHHHHHHHHCC
Q ss_conf 9999813786399999998379
Q 000452 648 RVAVCGTVGSGKSSLLSCILGE 669 (1495)
Q Consensus 648 ~vaIvG~~GSGKStLl~~ilGe 669 (1495)
+++++|..|+|||||++.+++.
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998997989999999709
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=91.05 E-value=0.04 Score=29.51 Aligned_cols=31 Identities=19% Similarity=0.230 Sum_probs=23.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 9999969998988999998335669863799
Q 000452 1277 KTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1307 (1495)
Q Consensus 1277 kigIVGrTGSGKSTLl~~L~rl~ep~~G~I~ 1307 (1495)
.++|+|.+|||||||++.|.+-+....-++.
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~~g~~v~ 34 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCARGIRPG 34 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEE
T ss_conf 8999918999899999999999997797687
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=90.88 E-value=0.31 Score=22.04 Aligned_cols=42 Identities=17% Similarity=0.143 Sum_probs=24.3
Q ss_pred ECCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEECCCCC
Q ss_conf 288099998137863999999983798798758998494799926775
Q 000452 644 FHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPW 691 (1495)
Q Consensus 644 ~~G~~vaIvG~~GSGKStLl~~ilGe~~~~~G~i~i~g~~ayv~Q~pw 691 (1495)
++...++++||+|+||||.+.-|...+.. .| .+++.+.=+.+
T Consensus 10 k~p~vi~lvGptGvGKTTTiAKLA~~~~~-~g-----~kV~lit~Dt~ 51 (211)
T d1j8yf2 10 KIPYVIMLVGVQGTGKATTAGKLAYFYKK-KG-----FKVGLVGADVY 51 (211)
T ss_dssp SSSEEEEEECSCCC----HHHHHHHHHHH-TT-----CCEEEEECCCS
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHH-CC-----CCEEEEEEECC
T ss_conf 99989999899999989999999999997-79-----93699972023
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=90.79 E-value=0.084 Score=26.77 Aligned_cols=28 Identities=21% Similarity=0.268 Sum_probs=22.2
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCC
Q ss_conf 8099998137863999999983798798
Q 000452 646 GMRVAVCGTVGSGKSSLLSCILGEVPKI 673 (1495)
Q Consensus 646 G~~vaIvG~~GSGKStLl~~ilGe~~~~ 673 (1495)
.++++|.|+.||||||+.+.|...+...
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~~ 28 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAMDNLRKE 28 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 9889998999989899999999999876
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=90.77 E-value=0.1 Score=26.14 Aligned_cols=22 Identities=23% Similarity=0.474 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999969998988999998335
Q 000452 1277 KTGIVGRTGSGKSTLIQTLFRI 1298 (1495)
Q Consensus 1277 kigIVGrTGSGKSTLl~~L~rl 1298 (1495)
+|.++|+||+|||||+++|+|-
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~ 55 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGE 55 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999899998699999998589
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=90.68 E-value=0.091 Score=26.47 Aligned_cols=25 Identities=36% Similarity=0.445 Sum_probs=22.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999969998988999998335669
Q 000452 1277 KTGIVGRTGSGKSTLIQTLFRIVEP 1301 (1495)
Q Consensus 1277 kigIVGrTGSGKSTLl~~L~rl~ep 1301 (1495)
.|||.|++|||||||.+.|...+..
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~~ 48 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLRE 48 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 9997898878999999999998363
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=90.52 E-value=0.094 Score=26.35 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=20.1
Q ss_pred EEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 99998137863999999983798
Q 000452 648 RVAVCGTVGSGKSSLLSCILGEV 670 (1495)
Q Consensus 648 ~vaIvG~~GSGKStLl~~ilGe~ 670 (1495)
+++++|..|+|||||++.+.+.-
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999989999999996798
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.47 E-value=0.33 Score=21.77 Aligned_cols=110 Identities=17% Similarity=0.232 Sum_probs=61.9
Q ss_pred EECCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEECCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHCCH
Q ss_conf 62880999981378639999999837987987589984947999267756675588997219989999999999981928
Q 000452 643 VFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMDRERYNAVLDACSLE 722 (1495)
Q Consensus 643 i~~G~~vaIvG~~GSGKStLl~~ilGe~~~~~G~i~i~g~~ayv~Q~pwi~~gTIreNIlfG~~~d~~~y~~vi~ac~L~ 722 (1495)
+++..-+.+.||.|+|||+|.+++.+++.. ..-++. .
T Consensus 38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~~~---------~~~~~~----------------------------------~ 74 (265)
T d1r7ra3 38 MTPSKGVLFYGPPGCGKTLLAKAIANECQA---------NFISIK----------------------------------G 74 (265)
T ss_dssp CCCCCEEEEBCCTTSSHHHHHHHHHHHTTC---------EEEEEC----------------------------------H
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHCC---------CEEEEE----------------------------------H
T ss_conf 998875788789987630477887877189---------479988----------------------------------7
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHH---------HHHHHHHHHHH---HHH
Q ss_conf 888634789864014798866647999999999860399786742867766988---------89999999998---875
Q 000452 723 KDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAH---------TGSHLFKEVLL---GLL 790 (1495)
Q Consensus 723 ~Dl~~lp~Gd~T~IGe~G~nLSGGQKqRIaLARAly~~adI~LLDDp~SalD~~---------t~~~if~~~i~---~~l 790 (1495)
.++.. +..| ...++-|-.+.+|--..|-|+++||.=+..... ....+....+. +..
T Consensus 75 ~~l~~------~~~~------~~~~~l~~~f~~A~~~~p~il~ideid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~ 142 (265)
T d1r7ra3 75 PELLT------MWFG------ESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS 142 (265)
T ss_dssp HHHHT------SCTT------THHHHHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCC---
T ss_pred HHHHH------CCCC------CHHHHHHHHHHHHHHCCCCCEEHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 99525------3165------15899999999998639843568754632455787678873799999999999962867
Q ss_pred C--CCEEEEEECCCCCCCC
Q ss_conf 8--9779998057774235
Q 000452 791 N--SKTVLYVTHQVEFLPA 807 (1495)
Q Consensus 791 ~--~kTvIlvTH~~~~l~~ 807 (1495)
. +--+|..||+++.++.
T Consensus 143 ~~~~v~vi~ttn~~~~ld~ 161 (265)
T d1r7ra3 143 TKKNVFIIGATNRPDIIDP 161 (265)
T ss_dssp ---CCEEEECCBSCTTTSC
T ss_pred CCCCEEEEEECCCCHHCCH
T ss_conf 7799899991799222799
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=90.40 E-value=0.13 Score=25.26 Aligned_cols=27 Identities=22% Similarity=0.382 Sum_probs=22.2
Q ss_pred ECCCEEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 288099998137863999999983798
Q 000452 644 FHGMRVAVCGTVGSGKSSLLSCILGEV 670 (1495)
Q Consensus 644 ~~G~~vaIvG~~GSGKStLl~~ilGe~ 670 (1495)
|+|-.++++|+.||||||..+.|.-.+
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 996389998999998899999999986
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=90.39 E-value=0.13 Score=25.26 Aligned_cols=24 Identities=33% Similarity=0.367 Sum_probs=20.8
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 999981378639999999837987
Q 000452 648 RVAVCGTVGSGKSSLLSCILGEVP 671 (1495)
Q Consensus 648 ~vaIvG~~GSGKStLl~~ilGe~~ 671 (1495)
.++|+|+.|||||||++.++....
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~ 25 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLE 25 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899991899839999999999884
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=90.36 E-value=0.12 Score=25.56 Aligned_cols=26 Identities=23% Similarity=0.529 Sum_probs=21.7
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 80999981378639999999837987
Q 000452 646 GMRVAVCGTVGSGKSSLLSCILGEVP 671 (1495)
Q Consensus 646 G~~vaIvG~~GSGKStLl~~ilGe~~ 671 (1495)
.+.+.++|++||||||+.+.|..++.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 85999989999998999999999728
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=90.18 E-value=0.35 Score=21.59 Aligned_cols=24 Identities=33% Similarity=0.542 Sum_probs=21.6
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 999981378639999999837987
Q 000452 648 RVAVCGTVGSGKSSLLSCILGEVP 671 (1495)
Q Consensus 648 ~vaIvG~~GSGKStLl~~ilGe~~ 671 (1495)
-+.+.||.|+|||++.+++..++.
T Consensus 44 giLl~GppGtGKT~la~aia~~~~ 67 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGEAR 67 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 488766898883599999998739
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.13 E-value=0.11 Score=25.90 Aligned_cols=22 Identities=32% Similarity=0.578 Sum_probs=20.7
Q ss_pred EEEEEECCCCCHHHHHHHHHCC
Q ss_conf 9999813786399999998379
Q 000452 648 RVAVCGTVGSGKSSLLSCILGE 669 (1495)
Q Consensus 648 ~vaIvG~~GSGKStLl~~ilGe 669 (1495)
.++++|+.|+|||||++.+.|+
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998899999999679
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=90.01 E-value=0.12 Score=25.55 Aligned_cols=27 Identities=22% Similarity=0.319 Sum_probs=23.8
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 089399999699989889999983356
Q 000452 1273 PGEKKTGIVGRTGSGKSTLIQTLFRIV 1299 (1495)
Q Consensus 1273 ~~GekigIVGrTGSGKSTLl~~L~rl~ 1299 (1495)
+.+..+.|+|++||||||+.+.|.+-+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 987189998999989899999999986
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=89.87 E-value=0.11 Score=25.68 Aligned_cols=28 Identities=18% Similarity=0.185 Sum_probs=24.6
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 0893999996999898899999833566
Q 000452 1273 PGEKKTGIVGRTGSGKSTLIQTLFRIVE 1300 (1495)
Q Consensus 1273 ~~GekigIVGrTGSGKSTLl~~L~rl~e 1300 (1495)
+.|..|-++|.+||||||+.+.|.+-+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9976999889999999999999999986
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=89.80 E-value=0.37 Score=21.36 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=13.3
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHCC
Q ss_conf 8809999813786399999998379
Q 000452 645 HGMRVAVCGTVGSGKSSLLSCILGE 669 (1495)
Q Consensus 645 ~G~~vaIvG~~GSGKStLl~~ilGe 669 (1495)
++..++++||+|+||||.+.-|...
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~ 29 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRY 29 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9779999899999889999999999
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=89.77 E-value=0.12 Score=25.52 Aligned_cols=22 Identities=23% Similarity=0.344 Sum_probs=19.7
Q ss_pred EEEEEECCCCCHHHHHHHHHCC
Q ss_conf 9999813786399999998379
Q 000452 648 RVAVCGTVGSGKSSLLSCILGE 669 (1495)
Q Consensus 648 ~vaIvG~~GSGKStLl~~ilGe 669 (1495)
+++++|+.|+|||||++.+.+.
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998989999999659
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.76 E-value=0.12 Score=25.51 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=20.9
Q ss_pred EEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 99998137863999999983798
Q 000452 648 RVAVCGTVGSGKSSLLSCILGEV 670 (1495)
Q Consensus 648 ~vaIvG~~GSGKStLl~~ilGe~ 670 (1495)
+++++|+.|+|||||++.+.+.-
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=89.75 E-value=0.063 Score=27.79 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=21.3
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 999981378639999999837987
Q 000452 648 RVAVCGTVGSGKSSLLSCILGEVP 671 (1495)
Q Consensus 648 ~vaIvG~~GSGKStLl~~ilGe~~ 671 (1495)
.+.++||.|+||||+++++..++.
T Consensus 47 ~lll~Gp~G~GKTtla~~iak~l~ 70 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALARELF 70 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 699978999748799999999987
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.67 E-value=0.38 Score=21.29 Aligned_cols=29 Identities=21% Similarity=0.295 Sum_probs=23.8
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 50893999996999898899999833566
Q 000452 1272 FPGEKKTGIVGRTGSGKSTLIQTLFRIVE 1300 (1495)
Q Consensus 1272 i~~GekigIVGrTGSGKSTLl~~L~rl~e 1300 (1495)
+++..-+-+.|+.|+|||+|++++.+-..
T Consensus 38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 38 MTPSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 99887578878998763047788787718
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=89.66 E-value=0.062 Score=27.88 Aligned_cols=26 Identities=27% Similarity=0.302 Sum_probs=22.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 99999699989889999983356698
Q 000452 1277 KTGIVGRTGSGKSTLIQTLFRIVEPA 1302 (1495)
Q Consensus 1277 kigIVGrTGSGKSTLl~~L~rl~ep~ 1302 (1495)
.+||+|.+|||||||+..|.+.+...
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~L~~~ 28 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAAAVRE 28 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHC
T ss_conf 99998099998999999999999867
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=89.66 E-value=0.11 Score=25.93 Aligned_cols=24 Identities=38% Similarity=0.583 Sum_probs=22.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399999699989889999983356
Q 000452 1276 KKTGIVGRTGSGKSTLIQTLFRIV 1299 (1495)
Q Consensus 1276 ekigIVGrTGSGKSTLl~~L~rl~ 1299 (1495)
.+|+|+|++|||||||++.|..-+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 289998999998999999999984
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=89.64 E-value=0.17 Score=24.27 Aligned_cols=124 Identities=20% Similarity=0.293 Sum_probs=66.1
Q ss_pred EEECCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEECCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHCC
Q ss_conf 86288099998137863999999983798798758998494799926775667558899721998999999999998192
Q 000452 642 KVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMDRERYNAVLDACSL 721 (1495)
Q Consensus 642 ~i~~G~~vaIvG~~GSGKStLl~~ilGe~~~~~G~i~i~g~~ayv~Q~pwi~~gTIreNIlfG~~~d~~~y~~vi~ac~L 721 (1495)
-++.|..+-+.|+.|||||+|...+....++..| .++|+.=+-. +++++ ++.+++
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~------~v~yiDtE~~---------------~~~~~----a~~~Gv 107 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGG------TCAFIDAEHA---------------LDPVY----ARALGV 107 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTC------CEEEEESSCC---------------CCHHH----HHHTTC
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCC------EEEEEECCCC---------------CCHHH----HHHHCC
T ss_conf 8667547898058765227999999999970799------8999988765---------------89999----998289
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC--CCCCEEEECCCCCCC---C-------HH--HHHHHHHHHHH
Q ss_conf 8888634789864014798866647999999999860--399786742867766---9-------88--89999999998
Q 000452 722 EKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALY--QDADIYLFDDPFSAV---D-------AH--TGSHLFKEVLL 787 (1495)
Q Consensus 722 ~~Dl~~lp~Gd~T~IGe~G~nLSGGQKqRIaLARAly--~~adI~LLDDp~Sal---D-------~~--t~~~if~~~i~ 787 (1495)
+.| .+ .+-+ -. + ++.+ +.++..+. .+.+++++|-..+-. | .. ...+++...+.
T Consensus 108 d~d--~i------~~~~-~~--~-~E~~-~~~~~~l~~~~~~~liIiDSi~al~~r~e~~~~~~~~~~~~~a~~l~~~lr 174 (268)
T d1xp8a1 108 NTD--EL------LVSQ-PD--N-GEQA-LEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALR 174 (268)
T ss_dssp CGG--GC------EEEC-CS--S-HHHH-HHHHHHHHTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHH
T ss_pred CCH--HE------EEEC-CC--C-HHHH-HHHHHHHHHCCCCCEEEEECCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf 812--37------9974-89--9-9999-999999986589719999454545538887165341057799999999999
Q ss_pred ---HH-HCCCEEEEEECCCC
Q ss_conf ---87-58977999805777
Q 000452 788 ---GL-LNSKTVLYVTHQVE 803 (1495)
Q Consensus 788 ---~~-l~~kTvIlvTH~~~ 803 (1495)
.. -+.++.+++|+|+.
T Consensus 175 ~l~~~~~~~~~~vi~tNQv~ 194 (268)
T d1xp8a1 175 KLTAILSKTGTAAIFINQVR 194 (268)
T ss_dssp HHHHHHTTTCCEEEEEEEC-
T ss_pred HHHHHHHHCCCEEEEEEEEE
T ss_conf 97766643297699996786
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=89.56 E-value=0.13 Score=25.24 Aligned_cols=24 Identities=42% Similarity=0.516 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999996999898899999833566
Q 000452 1277 KTGIVGRTGSGKSTLIQTLFRIVE 1300 (1495)
Q Consensus 1277 kigIVGrTGSGKSTLl~~L~rl~e 1300 (1495)
.|+|+|..|||||||++.|.+-..
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~ 25 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLE 25 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899991899839999999999884
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.42 E-value=0.14 Score=24.79 Aligned_cols=25 Identities=16% Similarity=0.437 Sum_probs=19.4
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 0999981378639999999837987
Q 000452 647 MRVAVCGTVGSGKSSLLSCILGEVP 671 (1495)
Q Consensus 647 ~~vaIvG~~GSGKStLl~~ilGe~~ 671 (1495)
++++++||+|+||+||.+.++.+.+
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~~ 28 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKHP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 7199999899999999999997097
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.30 E-value=0.22 Score=23.22 Aligned_cols=31 Identities=13% Similarity=0.179 Sum_probs=26.1
Q ss_pred EEECCCEEEEEECCCCCHHHHHHHHHCCCCC
Q ss_conf 8628809999813786399999998379879
Q 000452 642 KVFHGMRVAVCGTVGSGKSSLLSCILGEVPK 672 (1495)
Q Consensus 642 ~i~~G~~vaIvG~~GSGKStLl~~ilGe~~~ 672 (1495)
-+++|+.+.|.|++|||||+|...++.....
T Consensus 19 Gi~~G~v~~i~G~~GsGKT~l~l~la~~~~~ 49 (242)
T d1n0wa_ 19 GIETGSITEMFGEFRTGKTQICHTLAVTCQL 49 (242)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTS
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 9859979999958999999999999999988
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=89.28 E-value=0.028 Score=30.74 Aligned_cols=23 Identities=39% Similarity=0.608 Sum_probs=19.2
Q ss_pred EEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 99998137863999999983798
Q 000452 648 RVAVCGTVGSGKSSLLSCILGEV 670 (1495)
Q Consensus 648 ~vaIvG~~GSGKStLl~~ilGe~ 670 (1495)
+++++|.+|+|||||++++.|+-
T Consensus 2 kI~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.20 E-value=0.11 Score=25.93 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=21.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9399999699989889999983356
Q 000452 1275 EKKTGIVGRTGSGKSTLIQTLFRIV 1299 (1495)
Q Consensus 1275 GekigIVGrTGSGKSTLl~~L~rl~ 1299 (1495)
...+.|+|||||||+||++.|++-.
T Consensus 3 ~k~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 3 RKTLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHC
T ss_conf 7719999989999999999999709
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.09 E-value=0.14 Score=24.99 Aligned_cols=45 Identities=22% Similarity=0.344 Sum_probs=30.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEEECCCCCCC
Q ss_conf 99999699989889999983356698637999697389999777722438981567678
Q 000452 1277 KTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSIIPQDPVMF 1335 (1495)
Q Consensus 1277 kigIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF 1335 (1495)
.|||.|++||||||+.+.|...+.-... ..-...+.+++||.+..
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~~~~--------------~~~~~~~~vi~~D~yy~ 48 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQNEV--------------DYRQKQVVILSQDSFYR 48 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGGGS--------------CGGGCSEEEEEGGGGBC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCHHCC--------------CCCCCCEEEEECCCCCC
T ss_conf 9999899978799999999999641013--------------45788439993465322
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.00 E-value=0.28 Score=22.42 Aligned_cols=49 Identities=18% Similarity=0.089 Sum_probs=32.2
Q ss_pred EEECCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEECCCC
Q ss_conf 8628809999813786399999998379879875899849479992677
Q 000452 642 KVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSP 690 (1495)
Q Consensus 642 ~i~~G~~vaIvG~~GSGKStLl~~ilGe~~~~~G~i~i~g~~ayv~Q~p 690 (1495)
-+++|+.+.|.|+.|||||+|..-++-........-..++...|+..+.
T Consensus 30 Gi~~G~~~li~G~pGsGKT~l~lq~~~~~~~~~~~~~~~~~~~~i~~~~ 78 (251)
T d1szpa2 30 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 78 (251)
T ss_dssp SEESSSEEEEEESTTSSHHHHHHHHTTTTTSCTTTTCCSCEEEEEESSS
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECC
T ss_conf 9869969999838999889999999998631243126896399994023
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=88.96 E-value=0.15 Score=24.58 Aligned_cols=22 Identities=45% Similarity=0.590 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999969998988999998335
Q 000452 1277 KTGIVGRTGSGKSTLIQTLFRI 1298 (1495)
Q Consensus 1277 kigIVGrTGSGKSTLl~~L~rl 1298 (1495)
+|+++|++|+|||||++.|++-
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~ 23 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKK 23 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999899999999677
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=88.93 E-value=0.12 Score=25.37 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=19.3
Q ss_pred EEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 99998137863999999983798
Q 000452 648 RVAVCGTVGSGKSSLLSCILGEV 670 (1495)
Q Consensus 648 ~vaIvG~~GSGKStLl~~ilGe~ 670 (1495)
.++|+|+.||||||+.+.|.-.+
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 79898999999899999999997
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=88.82 E-value=0.31 Score=22.02 Aligned_cols=26 Identities=23% Similarity=0.479 Sum_probs=22.4
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 88099998137863999999983798
Q 000452 645 HGMRVAVCGTVGSGKSSLLSCILGEV 670 (1495)
Q Consensus 645 ~G~~vaIvG~~GSGKStLl~~ilGe~ 670 (1495)
.+.+++|+|...+|||||++++.+.-
T Consensus 9 ~~~kiGivG~Pn~GKSTlfnalT~~~ 34 (296)
T d1ni3a1 9 NNLKTGIVGMPNVGKSTFFRAITKSV 34 (296)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHST
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 87379997899998999999997789
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.76 E-value=0.14 Score=24.85 Aligned_cols=25 Identities=12% Similarity=0.161 Sum_probs=21.4
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 0999981378639999999837987
Q 000452 647 MRVAVCGTVGSGKSSLLSCILGEVP 671 (1495)
Q Consensus 647 ~~vaIvG~~GSGKStLl~~ilGe~~ 671 (1495)
.+++++|..||||||+.+.|...+.
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 8999989999999999999999997
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.75 E-value=0.15 Score=24.56 Aligned_cols=25 Identities=36% Similarity=0.720 Sum_probs=21.1
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCC
Q ss_conf 9999813786399999998379879
Q 000452 648 RVAVCGTVGSGKSSLLSCILGEVPK 672 (1495)
Q Consensus 648 ~vaIvG~~GSGKStLl~~ilGe~~~ 672 (1495)
.++|+||+||||+||.+.++.+.+.
T Consensus 3 pIvl~GpsG~GK~tl~~~L~~~~~~ 27 (186)
T d1gkya_ 3 PIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 6999899999989999999974886
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=88.71 E-value=0.17 Score=24.20 Aligned_cols=22 Identities=41% Similarity=0.667 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999969998988999998335
Q 000452 1277 KTGIVGRTGSGKSTLIQTLFRI 1298 (1495)
Q Consensus 1277 kigIVGrTGSGKSTLl~~L~rl 1298 (1495)
+|++||++|+|||||++.|++-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999999999999999688
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=88.63 E-value=0.16 Score=24.49 Aligned_cols=25 Identities=20% Similarity=0.308 Sum_probs=21.9
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 0999981378639999999837987
Q 000452 647 MRVAVCGTVGSGKSSLLSCILGEVP 671 (1495)
Q Consensus 647 ~~vaIvG~~GSGKStLl~~ilGe~~ 671 (1495)
+++.|+|+.||||||+.+.|...++
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 0899989999998999999999809
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=88.47 E-value=0.18 Score=23.96 Aligned_cols=22 Identities=41% Similarity=0.419 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999969998988999998335
Q 000452 1277 KTGIVGRTGSGKSTLIQTLFRI 1298 (1495)
Q Consensus 1277 kigIVGrTGSGKSTLl~~L~rl 1298 (1495)
.|+|||++|+|||||+++|.+-
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998899999999689
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.47 E-value=0.37 Score=21.37 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=19.8
Q ss_pred CCEEEEEECCCCCHHHHHHHHHC
Q ss_conf 80999981378639999999837
Q 000452 646 GMRVAVCGTVGSGKSSLLSCILG 668 (1495)
Q Consensus 646 G~~vaIvG~~GSGKStLl~~ilG 668 (1495)
.-+++++|..|+|||||++.+.+
T Consensus 4 ~~Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 4 SRKIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
T ss_conf 33899999899298999999971
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=88.44 E-value=0.14 Score=24.95 Aligned_cols=26 Identities=19% Similarity=0.369 Sum_probs=23.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 93999996999898899999833566
Q 000452 1275 EKKTGIVGRTGSGKSTLIQTLFRIVE 1300 (1495)
Q Consensus 1275 GekigIVGrTGSGKSTLl~~L~rl~e 1300 (1495)
...|.|.|.+||||||+.+.|.+.+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 85999989999998999999999728
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.37 E-value=0.45 Score=20.62 Aligned_cols=51 Identities=8% Similarity=0.133 Sum_probs=29.9
Q ss_pred HHHHHCCCCCEEEECCCCCCCCHHHHHHHHH---HHHHHHHCCCEEEEEECCCCCC
Q ss_conf 9998603997867428677669888999999---9998875897799980577742
Q 000452 753 IARALYQDADIYLFDDPFSAVDAHTGSHLFK---EVLLGLLNSKTVLYVTHQVEFL 805 (1495)
Q Consensus 753 LARAly~~adI~LLDDp~SalD~~t~~~if~---~~i~~~l~~kTvIlvTH~~~~l 805 (1495)
+.+..|++++.+++ .++..|..+-..+-+ +.......+..+++|.+..+..
T Consensus 65 ~~~~~~~~~~~~il--v~d~~~~~s~~~i~~~~~~~~~~~~~~~~iilvgnK~Dl~ 118 (164)
T d1yzqa1 65 LIPSYIRDSAAAVV--VYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLA 118 (164)
T ss_dssp GHHHHHTTCSEEEE--EEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCG
T ss_pred CHHHHHHCCCEEEE--EECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHH
T ss_conf 43888616644999--6065543132666766899998508996499973103404
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.35 E-value=0.46 Score=20.61 Aligned_cols=26 Identities=19% Similarity=0.254 Sum_probs=20.3
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 88099998137863999999983798
Q 000452 645 HGMRVAVCGTVGSGKSSLLSCILGEV 670 (1495)
Q Consensus 645 ~G~~vaIvG~~GSGKStLl~~ilGe~ 670 (1495)
+-..++|+||.||||||+.+.|...+
T Consensus 7 ~~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 7 QVSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 97289998999999899999999985
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=88.28 E-value=0.13 Score=25.22 Aligned_cols=32 Identities=34% Similarity=0.426 Sum_probs=25.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 39999969998988999998335669863799969
Q 000452 1276 KKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDG 1310 (1495)
Q Consensus 1276 ekigIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG 1310 (1495)
..|.|+|++||||||+++.|.+-+. +...++|
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~---~~~~~~~ 34 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD---NSAYIEG 34 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS---SEEEEEH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC---CCEEEEH
T ss_conf 0899989999998999999999809---9889830
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=88.21 E-value=0.46 Score=20.54 Aligned_cols=26 Identities=23% Similarity=0.239 Sum_probs=21.0
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCC
Q ss_conf 99998137863999999983798798
Q 000452 648 RVAVCGTVGSGKSSLLSCILGEVPKI 673 (1495)
Q Consensus 648 ~vaIvG~~GSGKStLl~~ilGe~~~~ 673 (1495)
.+.+.||.|+||+|+..++..++...
T Consensus 36 ~~Ll~Gp~G~GKtt~a~~~~~~l~~~ 61 (239)
T d1njfa_ 36 AYLFSGTRGVGKTSIARLLAKGLNCE 61 (239)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 59888899875899999999984685
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.21 E-value=0.27 Score=22.48 Aligned_cols=117 Identities=13% Similarity=0.152 Sum_probs=61.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEEECCCCCCCCCCHHHHCCCCCCCCHHH
Q ss_conf 89399999699989889999983356698637999697389999777722438981567678775777049998999999
Q 000452 1274 GEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQ 1353 (1495)
Q Consensus 1274 ~GekigIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~GTIR~NLdp~~~~sD~e 1353 (1495)
+-..|.|+|+.||||||+.+.|..-+ |-+.|+.- +-+|..+ .+...-....+++-.+......|..
T Consensus 7 ~~~iI~i~GppGSGKsT~a~~La~~~----g~~~is~g-------dl~R~~~---~~~~~~~~~~i~~~~~~~~~~~~~~ 72 (196)
T d1ukza_ 7 QVSVIFVLGGPGAGKGTQCEKLVKDY----SFVHLSAG-------DLLRAEQ---GRAGSQYGELIKNCIKEGQIVPQEI 72 (196)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS----SCEEEEHH-------HHHHHHH---HSTTCSCHHHHHHHHHTTCCCCHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH----CCEEEEHH-------HHHHHHH---HHCCCHHHHHHHHHHHCCCCCCCHH
T ss_conf 97289998999999899999999985----99088535-------8999886---2010178899887640000232036
Q ss_pred HHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 9999998399678971008865212269998890399999999987259986998758
Q 000452 1354 IWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEA 1411 (1495)
Q Consensus 1354 I~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nlS~GQrQll~LARALLk~~~ILiLDEa 1411 (1495)
+...+...-.. .....-+..+-++ +-....|...+.+.+.....++.||=+
T Consensus 73 ~~~~~~~~~~~----~~~~~~~~~vl~g---~p~~~~q~~~~~~~~~~~~~~i~l~~~ 123 (196)
T d1ukza_ 73 TLALLRNAISD----NVKANKHKFLIDG---FPRKMDQAISFERDIVESKFILFFDCP 123 (196)
T ss_dssp HHHHHHHHHHH----HHHTTCCEEEEET---CCCSHHHHHHHHHHTCCCSEEEEEECC
T ss_pred HHHHHHHHHHH----HHCCCCCCEEEEC---CCHHHHHHHHHHHHCCCCCEEECCCCC
T ss_conf 78999999886----4003777535404---313689999999861545543125798
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.15 E-value=0.13 Score=25.23 Aligned_cols=24 Identities=29% Similarity=0.318 Sum_probs=19.7
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 099998137863999999983798
Q 000452 647 MRVAVCGTVGSGKSSLLSCILGEV 670 (1495)
Q Consensus 647 ~~vaIvG~~GSGKStLl~~ilGe~ 670 (1495)
=+++|.|+.|||||||...|.-.+
T Consensus 28 ~iIGi~G~qGSGKSTl~~~l~~~L 51 (286)
T d1odfa_ 28 LFIFFSGPQGSGKSFTSIQIYNHL 51 (286)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 899837998788999999999999
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=87.95 E-value=0.19 Score=23.83 Aligned_cols=22 Identities=45% Similarity=0.640 Sum_probs=20.6
Q ss_pred EEEEEECCCCCHHHHHHHHHCC
Q ss_conf 9999813786399999998379
Q 000452 648 RVAVCGTVGSGKSSLLSCILGE 669 (1495)
Q Consensus 648 ~vaIvG~~GSGKStLl~~ilGe 669 (1495)
.+||+|.+.+|||||+++|++.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 7999969985499999999823
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=87.87 E-value=0.2 Score=23.52 Aligned_cols=20 Identities=30% Similarity=0.562 Sum_probs=17.8
Q ss_pred EEEEEECCCCCHHHHHHHHH
Q ss_conf 99998137863999999983
Q 000452 648 RVAVCGTVGSGKSSLLSCIL 667 (1495)
Q Consensus 648 ~vaIvG~~GSGKStLl~~il 667 (1495)
.++|+|..||||||+.+.+-
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99988888788999999999
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=87.85 E-value=0.21 Score=23.48 Aligned_cols=23 Identities=39% Similarity=0.588 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999699989889999983356
Q 000452 1277 KTGIVGRTGSGKSTLIQTLFRIV 1299 (1495)
Q Consensus 1277 kigIVGrTGSGKSTLl~~L~rl~ 1299 (1495)
.|||+|++.||||||+++|.+..
T Consensus 7 nIaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 7 NLGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEEECCCCCHHHHHHHHHHHC
T ss_conf 99999077870999999999743
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.76 E-value=0.29 Score=22.27 Aligned_cols=28 Identities=21% Similarity=0.251 Sum_probs=24.2
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8508939999969998988999998335
Q 000452 1271 TFPGEKKTGIVGRTGSGKSTLIQTLFRI 1298 (1495)
Q Consensus 1271 ~i~~GekigIVGrTGSGKSTLl~~L~rl 1298 (1495)
=+++|+.+-|.|++|||||||..-+..-
T Consensus 19 Gi~~G~v~~i~G~~GsGKT~l~l~la~~ 46 (242)
T d1n0wa_ 19 GIETGSITEMFGEFRTGKTQICHTLAVT 46 (242)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 9859979999958999999999999999
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=87.74 E-value=0.19 Score=23.71 Aligned_cols=22 Identities=27% Similarity=0.576 Sum_probs=18.9
Q ss_pred CCEEEEEECCCCCHHHHHHHHH
Q ss_conf 8099998137863999999983
Q 000452 646 GMRVAVCGTVGSGKSSLLSCIL 667 (1495)
Q Consensus 646 G~~vaIvG~~GSGKStLl~~il 667 (1495)
-..++|+|.+||||||+.+.+-
T Consensus 3 p~IIgitG~~gSGKstva~~l~ 24 (191)
T d1uf9a_ 3 PIIIGITGNIGSGKSTVAALLR 24 (191)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
T ss_conf 9899998988778999999999
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=87.70 E-value=0.39 Score=21.13 Aligned_cols=33 Identities=27% Similarity=0.437 Sum_probs=23.7
Q ss_pred CCCCCEEEEECCCEEEEEECCCCCHHHHHHHHHC
Q ss_conf 4113117862880999981378639999999837
Q 000452 635 TLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILG 668 (1495)
Q Consensus 635 ~L~~inl~i~~G~~vaIvG~~GSGKStLl~~ilG 668 (1495)
.++.--+.+ .|.-+.++|++|+||||+...++.
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred EEEEEEEEE-CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 178999999-999999981899998999999998
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.69 E-value=0.092 Score=26.44 Aligned_cols=26 Identities=23% Similarity=0.374 Sum_probs=22.7
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 88099998137863999999983798
Q 000452 645 HGMRVAVCGTVGSGKSSLLSCILGEV 670 (1495)
Q Consensus 645 ~G~~vaIvG~~GSGKStLl~~ilGe~ 670 (1495)
+|..+.++|++||||||+.+.|...+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99699988999999999999999999
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=87.62 E-value=0.5 Score=20.28 Aligned_cols=151 Identities=19% Similarity=0.130 Sum_probs=67.0
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCC-CC-CCEEEECC-EEEEECCCCCCCCCCHHH------HHHCCCCCCHHHHHHHHHH
Q ss_conf 999981378639999999837987-98-75899849-479992677566755889------9721998999999999998
Q 000452 648 RVAVCGTVGSGKSSLLSCILGEVP-KI-SGTLKLCG-TKAYVAQSPWIQSGKIED------NILFGKEMDRERYNAVLDA 718 (1495)
Q Consensus 648 ~vaIvG~~GSGKStLl~~ilGe~~-~~-~G~i~i~g-~~ayv~Q~pwi~~gTIre------NIlfG~~~d~~~y~~vi~a 718 (1495)
.++|+|...||||||+++|+|+=- |. .|..+-.- .+-|- +++....+.-.. ..-.....+.+++..-+..
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~~lP~~~~~~T~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 104 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLT-HLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEIIR 104 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEE-ECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEE-CCCCCCCCCCHHHHHHHHHCCCCEECCHHHHHHHHHH
T ss_conf 599981898979999999968997887897540688899994-5776667653065667762688622378999999999
Q ss_pred HC---------CHHHHHHC-----CCCCCCCCCCCCCCCCH-------HHHHHHHHHHHHCCCCC--EEEECCCCCCCCH
Q ss_conf 19---------28888634-----78986401479886664-------79999999998603997--8674286776698
Q 000452 719 CS---------LEKDLEIL-----SFGDQTVVGERGINLSG-------GQKQRIQIARALYQDAD--IYLFDDPFSAVDA 775 (1495)
Q Consensus 719 c~---------L~~Dl~~l-----p~Gd~T~IGe~G~nLSG-------GQKqRIaLARAly~~ad--I~LLDDp~SalD~ 775 (1495)
.. ...+.... -..+.+.|.--|.+-+. .+.+.-.+++...++++ |+...+.......
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~ 184 (306)
T d1jwyb_ 105 DTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLAN 184 (306)
T ss_dssp HCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTT
T ss_pred HHHHHCCCCCCCCCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
T ss_conf 99874277776566506998247898880686588864436688403589999999999982777516876325631003
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 88999999999887589779998057
Q 000452 776 HTGSHLFKEVLLGLLNSKTVLYVTHQ 801 (1495)
Q Consensus 776 ~t~~~if~~~i~~~l~~kTvIlvTH~ 801 (1495)
.....+.++ +.+ ...+|++++|+-
T Consensus 185 ~~~~~~~~~-~~~-~~~r~i~Vitk~ 208 (306)
T d1jwyb_ 185 SDALQLAKE-VDP-EGKRTIGVITKL 208 (306)
T ss_dssp CSHHHHHHH-HCS-SCSSEEEEEECT
T ss_pred CHHHHHHHH-HCC-CCCEEEEEEECC
T ss_conf 499999997-386-788589998204
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=87.61 E-value=0.5 Score=20.27 Aligned_cols=21 Identities=33% Similarity=0.452 Sum_probs=18.9
Q ss_pred EEEEEECCCCCHHHHHHHHHC
Q ss_conf 999981378639999999837
Q 000452 648 RVAVCGTVGSGKSSLLSCILG 668 (1495)
Q Consensus 648 ~vaIvG~~GSGKStLl~~ilG 668 (1495)
+++++|..|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899588999999972
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=87.59 E-value=0.22 Score=23.28 Aligned_cols=73 Identities=19% Similarity=0.237 Sum_probs=41.6
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEEECCCCCCCCCCHHHHCCCCCCCCHH
Q ss_conf 08939999969998988999998335669863799969738999977772243898156767877577704999899999
Q 000452 1273 PGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDE 1352 (1495)
Q Consensus 1273 ~~GekigIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~GTIR~NLdp~~~~sD~ 1352 (1495)
|+|-+|.|+|+.||||||+.+.|..-+ |-..|+-- +-+|.. .++..-..-.++..++-+....++
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~----g~~~i~~g-------dllr~~----~~~~~~~g~~~~~~~~~g~~~~~~ 65 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF----CVCHLATG-------DMLRAM----VASGSELGKKLKATMDAGKLVSDE 65 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH----TCEEEEHH-------HHHHHH----HHHTCHHHHHHHHHHHTTCCCCHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH----CCEEEEHH-------HHHHHH----HHCCCCCCCHHHHHHCCCCCCCCC
T ss_conf 996389998999998899999999986----98577577-------889988----742674330233132167743330
Q ss_pred HHHHHHHH
Q ss_conf 99999998
Q 000452 1353 QIWEALDK 1360 (1495)
Q Consensus 1353 eI~~aL~~ 1360 (1495)
.+.+.+..
T Consensus 66 ~v~~~~~~ 73 (190)
T d1ak2a1 66 MVLELIEK 73 (190)
T ss_dssp HHHHHHHH
T ss_pred EEEEEEHH
T ss_conf 24531113
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.57 E-value=0.2 Score=23.57 Aligned_cols=24 Identities=38% Similarity=0.591 Sum_probs=20.2
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 999981378639999999837987
Q 000452 648 RVAVCGTVGSGKSSLLSCILGEVP 671 (1495)
Q Consensus 648 ~vaIvG~~GSGKStLl~~ilGe~~ 671 (1495)
.++|+||+||||+|+.+.++.+.+
T Consensus 2 pIvl~GPsGsGK~tl~~~L~~~~~ 25 (190)
T d1lvga_ 2 PVVLSGPSGAGKSTLLKKLFQEHS 25 (190)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 199999999999999999997488
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=87.49 E-value=0.23 Score=23.14 Aligned_cols=25 Identities=28% Similarity=0.434 Sum_probs=21.7
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 0999981378639999999837987
Q 000452 647 MRVAVCGTVGSGKSSLLSCILGEVP 671 (1495)
Q Consensus 647 ~~vaIvG~~GSGKStLl~~ilGe~~ 671 (1495)
-+++++|+.|+|||||++.+.++..
T Consensus 3 ~ki~ivG~~~~GKTsLi~~l~~~~~ 27 (165)
T d1ksha_ 3 LRLLMLGLDNAGKTTILKKFNGEDV 27 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTCCC
T ss_pred EEEEEECCCCCCHHHHHHHHCCCCC
T ss_conf 7999999999899999999808998
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=87.48 E-value=0.23 Score=23.11 Aligned_cols=26 Identities=27% Similarity=0.286 Sum_probs=22.2
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 08939999969998988999998335
Q 000452 1273 PGEKKTGIVGRTGSGKSTLIQTLFRI 1298 (1495)
Q Consensus 1273 ~~GekigIVGrTGSGKSTLl~~L~rl 1298 (1495)
++.-||.+||++|+|||||++.|.+=
T Consensus 11 ~k~~kI~lvG~~~vGKTsLl~~l~~~ 36 (186)
T d1f6ba_ 11 KKTGKLVFLGLDNAGKTTLLHMLKDD 36 (186)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 77778999999998989999999678
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.38 E-value=0.13 Score=25.18 Aligned_cols=27 Identities=22% Similarity=0.261 Sum_probs=23.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 893999996999898899999833566
Q 000452 1274 GEKKTGIVGRTGSGKSTLIQTLFRIVE 1300 (1495)
Q Consensus 1274 ~GekigIVGrTGSGKSTLl~~L~rl~e 1300 (1495)
.|..|-++|.+||||||+.+.|.+.+.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 996999889999999999999999997
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.38 E-value=0.25 Score=22.81 Aligned_cols=23 Identities=39% Similarity=0.598 Sum_probs=21.2
Q ss_pred EEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 99998137863999999983798
Q 000452 648 RVAVCGTVGSGKSSLLSCILGEV 670 (1495)
Q Consensus 648 ~vaIvG~~GSGKStLl~~ilGe~ 670 (1495)
.++|+|...||||||+++|+|.=
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 69997689897999999996898
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=87.34 E-value=0.19 Score=23.75 Aligned_cols=25 Identities=20% Similarity=0.397 Sum_probs=20.7
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 0999981378639999999837987
Q 000452 647 MRVAVCGTVGSGKSSLLSCILGEVP 671 (1495)
Q Consensus 647 ~~vaIvG~~GSGKStLl~~ilGe~~ 671 (1495)
+.+.++|+.||||||+.+.|.-.+.
T Consensus 3 k~I~l~G~~GsGKSTvak~La~~L~ 27 (169)
T d1kaga_ 3 RNIFLVGPMGAGKSTIGRQLAQQLN 27 (169)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 7499989999999999999999969
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=87.17 E-value=0.22 Score=23.23 Aligned_cols=54 Identities=11% Similarity=0.159 Sum_probs=33.3
Q ss_pred CHHHHHHHHHHHHCCCCC--EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 039999999998725998--6998758889999989999999998569927998705
Q 000452 1387 MGQRQLVCLGRVLLKRRK--ILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAH 1441 (1495)
Q Consensus 1387 ~GQrQll~LARALLk~~~--ILiLDEaTsslD~~Te~~Iq~~Ir~~f~~~TvI~IAH 1441 (1495)
..+.+-..+++..++++. |++...++..........+.+.+... ..+|++++++
T Consensus 152 ~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~~~~-~~r~i~Vitk 207 (306)
T d1jwyb_ 152 DIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPE-GKRTIGVITK 207 (306)
T ss_dssp CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSS-CSSEEEEEEC
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHCCC-CCEEEEEEEC
T ss_conf 5899999999999827775168763256310034999999973867-8858999820
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.12 E-value=0.22 Score=23.28 Aligned_cols=61 Identities=11% Similarity=0.115 Sum_probs=33.8
Q ss_pred CCHHHHHHHHHHHHCCCCC--EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHC
Q ss_conf 9039999999998725998--69987588899999899999999985699279987059022301
Q 000452 1386 SMGQRQLVCLGRVLLKRRK--ILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVID 1448 (1495)
Q Consensus 1386 S~GQrQll~LARALLk~~~--ILiLDEaTsslD~~Te~~Iq~~Ir~~f~~~TvI~IAHRl~ti~~ 1448 (1495)
...+.+-..+.+..++++. |++++.|+..+.......+.+.+... ..+|++++++ ...+.+
T Consensus 145 ~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~~~~~~~-~~r~i~Vltk-~D~~~~ 207 (299)
T d2akab1 145 PDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQ-GQRTIGVITK-LDLMDE 207 (299)
T ss_dssp TTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTT-CSSEEEEEEC-GGGSCT
T ss_pred HHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCC-CCCEEEEEEC-CCCCCC
T ss_conf 14799999999998627560356640345421125999999973867-7813667702-665531
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=87.05 E-value=0.53 Score=20.08 Aligned_cols=24 Identities=25% Similarity=0.538 Sum_probs=19.6
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCC
Q ss_conf 809999813786399999998379
Q 000452 646 GMRVAVCGTVGSGKSSLLSCILGE 669 (1495)
Q Consensus 646 G~~vaIvG~~GSGKStLl~~ilGe 669 (1495)
+.+++|+|...+|||||++++.+-
T Consensus 2 ~~~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 2 GFKCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 834888899999889999999779
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.90 E-value=0.24 Score=22.91 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=20.4
Q ss_pred CEEEEEECCCCCHHHHHHHHHCC
Q ss_conf 09999813786399999998379
Q 000452 647 MRVAVCGTVGSGKSSLLSCILGE 669 (1495)
Q Consensus 647 ~~vaIvG~~GSGKStLl~~ilGe 669 (1495)
+.|+|+|+.|+|||||++.+++.
T Consensus 1 k~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 1 RAVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 98999999998989999999809
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=86.84 E-value=0.26 Score=22.72 Aligned_cols=26 Identities=19% Similarity=0.295 Sum_probs=22.5
Q ss_pred ECCCEEEEEECCCCCHHHHHHHHHCC
Q ss_conf 28809999813786399999998379
Q 000452 644 FHGMRVAVCGTVGSGKSSLLSCILGE 669 (1495)
Q Consensus 644 ~~G~~vaIvG~~GSGKStLl~~ilGe 669 (1495)
++.-+++++|..|+|||||++.+.+.
T Consensus 13 ~k~~kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 13 HQEHKVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 98579999999998989999999668
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.83 E-value=0.15 Score=24.57 Aligned_cols=23 Identities=43% Similarity=0.629 Sum_probs=19.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99996999898899999833566
Q 000452 1278 TGIVGRTGSGKSTLIQTLFRIVE 1300 (1495)
Q Consensus 1278 igIVGrTGSGKSTLl~~L~rl~e 1300 (1495)
|.|+|+|||||+||++.|+.-.+
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99989999998999999997488
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=86.71 E-value=0.19 Score=23.74 Aligned_cols=28 Identities=25% Similarity=0.338 Sum_probs=23.6
Q ss_pred ECCCEEEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 2880999981378639999999837987
Q 000452 644 FHGMRVAVCGTVGSGKSSLLSCILGEVP 671 (1495)
Q Consensus 644 ~~G~~vaIvG~~GSGKStLl~~ilGe~~ 671 (1495)
++..+++|.|..||||||+++.|-..++
T Consensus 7 ~kp~~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 7 TQPFTVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 9861999889999888999999998707
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.52 E-value=0.22 Score=23.20 Aligned_cols=22 Identities=32% Similarity=0.357 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999969998988999998335
Q 000452 1277 KTGIVGRTGSGKSTLIQTLFRI 1298 (1495)
Q Consensus 1277 kigIVGrTGSGKSTLl~~L~rl 1298 (1495)
+|+|||++|+|||||++.|.+-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998899999999679
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.47 E-value=0.29 Score=22.22 Aligned_cols=28 Identities=18% Similarity=0.195 Sum_probs=24.2
Q ss_pred ECCCEEEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 2880999981378639999999837987
Q 000452 644 FHGMRVAVCGTVGSGKSSLLSCILGEVP 671 (1495)
Q Consensus 644 ~~G~~vaIvG~~GSGKStLl~~ilGe~~ 671 (1495)
++|.+++|.|+-||||||+.+.|...+.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9805999989988899999999999998
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.35 E-value=0.2 Score=23.52 Aligned_cols=27 Identities=15% Similarity=0.335 Sum_probs=23.7
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 880999981378639999999837987
Q 000452 645 HGMRVAVCGTVGSGKSSLLSCILGEVP 671 (1495)
Q Consensus 645 ~G~~vaIvG~~GSGKStLl~~ilGe~~ 671 (1495)
++++++|-|+.||||||+++.|...++
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 998899987888779999999999973
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.24 E-value=0.27 Score=22.55 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=19.4
Q ss_pred EEEEEECCCCCHHHHHHHHHCC
Q ss_conf 9999813786399999998379
Q 000452 648 RVAVCGTVGSGKSSLLSCILGE 669 (1495)
Q Consensus 648 ~vaIvG~~GSGKStLl~~ilGe 669 (1495)
+++++|..|+|||||++.+.+.
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999991989999999739
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=86.24 E-value=0.21 Score=23.48 Aligned_cols=21 Identities=38% Similarity=0.705 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999969998988999998335
Q 000452 1278 TGIVGRTGSGKSTLIQTLFRI 1298 (1495)
Q Consensus 1278 igIVGrTGSGKSTLl~~L~rl 1298 (1495)
|||+|++|+|||||++.|.+-
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899999899999999689
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=86.22 E-value=0.28 Score=22.44 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=21.2
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 099998137863999999983798
Q 000452 647 MRVAVCGTVGSGKSSLLSCILGEV 670 (1495)
Q Consensus 647 ~~vaIvG~~GSGKStLl~~ilGe~ 670 (1495)
..+|++|...+|||||++++.|--
T Consensus 1 ~~v~lvG~pn~GKStlfn~lt~~~ 24 (319)
T d1wxqa1 1 MEIGVVGKPNVGKSTFFSAATLVD 24 (319)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--
T ss_pred CCEEEECCCCCCHHHHHHHHHCCC
T ss_conf 917688999998999999997889
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=86.22 E-value=0.15 Score=24.61 Aligned_cols=32 Identities=19% Similarity=0.177 Sum_probs=25.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE
Q ss_conf 93999996999898899999833566986379
Q 000452 1275 EKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQI 1306 (1495)
Q Consensus 1275 GekigIVGrTGSGKSTLl~~L~rl~ep~~G~I 1306 (1495)
+..|+|.|..||||||+++.|...+.....++
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~ 32 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNY 32 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 98899989999898999999999998769986
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=86.09 E-value=0.3 Score=22.10 Aligned_cols=26 Identities=31% Similarity=0.332 Sum_probs=21.5
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 88099998137863999999983798
Q 000452 645 HGMRVAVCGTVGSGKSSLLSCILGEV 670 (1495)
Q Consensus 645 ~G~~vaIvG~~GSGKStLl~~ilGe~ 670 (1495)
+...++|+||.||||||+.+.|.-.+
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99489998999998899999999997
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=86.03 E-value=0.32 Score=21.94 Aligned_cols=31 Identities=26% Similarity=0.382 Sum_probs=24.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 93999996999898899999833566986379996
Q 000452 1275 EKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILID 1309 (1495)
Q Consensus 1275 GekigIVGrTGSGKSTLl~~L~rl~ep~~G~I~ID 1309 (1495)
...|.|+|+.||||||+.+.|..-+ |-+.|+
T Consensus 6 p~iI~i~G~pGSGKsT~a~~La~~~----g~~~i~ 36 (194)
T d1qf9a_ 6 PNVVFVLGGPGSGKGTQCANIVRDF----GWVHLS 36 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH----CCEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH----CCCEEC
T ss_conf 9489998999998899999999997----992672
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=86.01 E-value=0.21 Score=23.49 Aligned_cols=24 Identities=29% Similarity=0.324 Sum_probs=20.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399999699989889999983356
Q 000452 1276 KKTGIVGRTGSGKSTLIQTLFRIV 1299 (1495)
Q Consensus 1276 ekigIVGrTGSGKSTLl~~L~rl~ 1299 (1495)
-+|.|+|+.||||||+.+.|..-+
T Consensus 5 ~~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 5 PNILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 979898999999899999999997
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.00 E-value=0.29 Score=22.30 Aligned_cols=22 Identities=32% Similarity=0.610 Sum_probs=19.5
Q ss_pred EEEEEECCCCCHHHHHHHHHCC
Q ss_conf 9999813786399999998379
Q 000452 648 RVAVCGTVGSGKSSLLSCILGE 669 (1495)
Q Consensus 648 ~vaIvG~~GSGKStLl~~ilGe 669 (1495)
+++++|+.|+|||||++.+.+.
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999996989999999709
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=85.82 E-value=0.52 Score=20.10 Aligned_cols=27 Identities=26% Similarity=0.332 Sum_probs=20.8
Q ss_pred EEECCCEEEEEECCCCCHHHHHHHHHC
Q ss_conf 862880999981378639999999837
Q 000452 642 KVFHGMRVAVCGTVGSGKSSLLSCILG 668 (1495)
Q Consensus 642 ~i~~G~~vaIvG~~GSGKStLl~~ilG 668 (1495)
-.-.|.-+.++|++|+||||+...++.
T Consensus 10 v~~~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 10 VDIYGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EEETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred EEECCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 999999999980899998999999998
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=85.80 E-value=0.43 Score=20.82 Aligned_cols=23 Identities=17% Similarity=0.310 Sum_probs=20.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 39999969998988999998335
Q 000452 1276 KKTGIVGRTGSGKSTLIQTLFRI 1298 (1495)
Q Consensus 1276 ekigIVGrTGSGKSTLl~~L~rl 1298 (1495)
=||.+||+.|+|||||++.|.+-
T Consensus 3 ~ki~ivG~~~~GKTsLi~~l~~~ 25 (165)
T d1ksha_ 3 LRLLMLGLDNAGKTTILKKFNGE 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEEECCCCCCHHHHHHHHCCC
T ss_conf 79999999998999999998089
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=85.74 E-value=0.33 Score=21.75 Aligned_cols=22 Identities=45% Similarity=0.607 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999969998988999998335
Q 000452 1277 KTGIVGRTGSGKSTLIQTLFRI 1298 (1495)
Q Consensus 1277 kigIVGrTGSGKSTLl~~L~rl 1298 (1495)
.|+|+|++|+|||||+++|.|-
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999979999899999999589
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.68 E-value=0.31 Score=22.01 Aligned_cols=49 Identities=10% Similarity=0.026 Sum_probs=31.5
Q ss_pred EEECCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEECCCC
Q ss_conf 8628809999813786399999998379879875899849479992677
Q 000452 642 KVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSP 690 (1495)
Q Consensus 642 ~i~~G~~vaIvG~~GSGKStLl~~ilGe~~~~~G~i~i~g~~ayv~Q~p 690 (1495)
-+++|+.+.|.|+.|||||+|...++.........-.....+.|.....
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 81 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHH
T ss_conf 9768979999889988788999999999974443166662488740177
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=85.58 E-value=0.34 Score=21.62 Aligned_cols=55 Identities=16% Similarity=0.240 Sum_probs=33.9
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEECCCCC--CCCCCHHHHHHCCC
Q ss_conf 88099998137863999999983798798758998494799926775--66755889972199
Q 000452 645 HGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPW--IQSGKIEDNILFGK 705 (1495)
Q Consensus 645 ~G~~vaIvG~~GSGKStLl~~ilGe~~~~~G~i~i~g~~ayv~Q~pw--i~~gTIreNIlfG~ 705 (1495)
+|++++|-|.-||||||+.+.|...+.. .|- ...+..++|+ -....+|+...-+.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~~-~g~-----~~~~~~~ep~~~~~g~~i~~~~~~~~ 57 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLEQ-LGI-----RDMVFTREPGGTQLAEKLRSLLLDIK 57 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHH-TTC-----CCEEEEESSCSSHHHHHHHHHHHSTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHH-CCC-----CEEEEECCCCCCCCHHHHHHHHHCCC
T ss_conf 9878999899888799999999999996-799-----73998329899611445589884621
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.49 E-value=0.31 Score=21.96 Aligned_cols=21 Identities=33% Similarity=0.610 Sum_probs=19.0
Q ss_pred EEEEEECCCCCHHHHHHHHHC
Q ss_conf 999981378639999999837
Q 000452 648 RVAVCGTVGSGKSSLLSCILG 668 (1495)
Q Consensus 648 ~vaIvG~~GSGKStLl~~ilG 668 (1495)
+++++|..|+|||||++.+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999198999999971
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=85.41 E-value=0.34 Score=21.66 Aligned_cols=20 Identities=40% Similarity=0.624 Sum_probs=17.8
Q ss_pred EEEEEECCCCCHHHHHHHHH
Q ss_conf 99998137863999999983
Q 000452 648 RVAVCGTVGSGKSSLLSCIL 667 (1495)
Q Consensus 648 ~vaIvG~~GSGKStLl~~il 667 (1495)
.++|+|..||||||..+.+-
T Consensus 5 iIgitG~igSGKStv~~~l~ 24 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFA 24 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99978988688999999999
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=85.34 E-value=0.29 Score=22.21 Aligned_cols=24 Identities=29% Similarity=0.497 Sum_probs=20.8
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCC
Q ss_conf 809999813786399999998379
Q 000452 646 GMRVAVCGTVGSGKSSLLSCILGE 669 (1495)
Q Consensus 646 G~~vaIvG~~GSGKStLl~~ilGe 669 (1495)
--+++++|+.|+|||||++.+.+.
T Consensus 16 ~~kI~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 16 EVRILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 779999999998999999999648
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=85.34 E-value=0.38 Score=21.26 Aligned_cols=25 Identities=32% Similarity=0.392 Sum_probs=21.9
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 0893999996999898899999833
Q 000452 1273 PGEKKTGIVGRTGSGKSTLIQTLFR 1297 (1495)
Q Consensus 1273 ~~GekigIVGrTGSGKSTLl~~L~r 1297 (1495)
++.-||.+||+.|+|||||++.|.+
T Consensus 13 ~k~~kI~vvG~~~~GKSsLi~rl~~ 37 (177)
T d1zj6a1 13 HQEHKVIIVGLDNAGKTTILYQFSM 37 (177)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHC
T ss_conf 9857999999999898999999966
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=85.28 E-value=0.27 Score=22.53 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=20.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 39999969998988999998335
Q 000452 1276 KKTGIVGRTGSGKSTLIQTLFRI 1298 (1495)
Q Consensus 1276 ekigIVGrTGSGKSTLl~~L~rl 1298 (1495)
=||.|||++|+|||||++.+.+-
T Consensus 6 ~kI~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 6 MRILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHCC
T ss_conf 29999999998999999999679
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=85.24 E-value=0.27 Score=22.50 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999996999898899999833
Q 000452 1277 KTGIVGRTGSGKSTLIQTLFR 1297 (1495)
Q Consensus 1277 kigIVGrTGSGKSTLl~~L~r 1297 (1495)
||.++|+.|+|||||++.|.+
T Consensus 2 kivlvG~~~vGKSsLi~~l~~ 22 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKL 22 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 899999999898999999965
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=85.23 E-value=0.2 Score=23.70 Aligned_cols=27 Identities=26% Similarity=0.484 Sum_probs=22.7
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 880999981378639999999837987
Q 000452 645 HGMRVAVCGTVGSGKSSLLSCILGEVP 671 (1495)
Q Consensus 645 ~G~~vaIvG~~GSGKStLl~~ilGe~~ 671 (1495)
+.-.++|+|+.|+|||||+..+...+.
T Consensus 50 ~~~~igitG~pGaGKSTli~~l~~~~~ 76 (323)
T d2qm8a1 50 RAIRVGITGVPGVGKSTTIDALGSLLT 76 (323)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 815986117998889999999999876
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=85.21 E-value=0.19 Score=23.80 Aligned_cols=22 Identities=36% Similarity=0.542 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999969998988999998335
Q 000452 1277 KTGIVGRTGSGKSTLIQTLFRI 1298 (1495)
Q Consensus 1277 kigIVGrTGSGKSTLl~~L~rl 1298 (1495)
.|||+|++++|||||++.|.+-
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 6999899998799999999689
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=85.12 E-value=0.65 Score=19.31 Aligned_cols=151 Identities=20% Similarity=0.103 Sum_probs=65.6
Q ss_pred CCCCCCEE-EEECCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEECCCCCCCCCCHHHHH-HCCCCCCHHH
Q ss_conf 94113117-862880999981378639999999837987987589984947999267756675588997-2199899999
Q 000452 634 PTLKDINL-KVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNI-LFGKEMDRER 711 (1495)
Q Consensus 634 ~~L~~inl-~i~~G~~vaIvG~~GSGKStLl~~ilGe~~~~~G~i~i~g~~ayv~Q~pwi~~gTIreNI-lfG~~~d~~~ 711 (1495)
+.|.++=- -+++|+++.|.|++|+|||+|..-++....... ...+.|++-+.- ...++... .++ ++.+.
T Consensus 13 ~~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~~~~~~~~-----~~~~~~~s~e~~--~~~~~~~~~~~~--~~~~~ 83 (242)
T d1tf7a1 13 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEF-----DEPGVFVTFEET--PQDIIKNARSFG--WDLAK 83 (242)
T ss_dssp TTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHH-----CCCEEEEESSSC--HHHHHHHHGGGT--CCHHH
T ss_pred HHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHC-----CCCCCCCCCCCC--HHHHHHHHHHCC--CCHHH
T ss_conf 779885568996983999994799999999999999999856-----887420126679--999999999849--98489
Q ss_pred HHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHH-HHH-HHHHHC-CCCCEEEECCCCCCCC----HHHHHHHHHH
Q ss_conf 99999981928888634789864014798866647999-999-999860-3997867428677669----8889999999
Q 000452 712 YNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQ-RIQ-IARALY-QDADIYLFDDPFSAVD----AHTGSHLFKE 784 (1495)
Q Consensus 712 y~~vi~ac~L~~Dl~~lp~Gd~T~IGe~G~nLSGGQKq-RIa-LARAly-~~adI~LLDDp~SalD----~~t~~~if~~ 784 (1495)
+.... . ...-+.....+.-......... -++ +.+++- .++++++.|...+-.+ .......+..
T Consensus 84 ~~~~~---~-------~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~viiD~~~~l~~~~~~~~~~~~~~~~ 153 (242)
T d1tf7a1 84 LVDEG---K-------LFILDASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFR 153 (242)
T ss_dssp HHHTT---S-------EEEEECCCCSSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHH
T ss_pred HHHHC---C-------HHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 88714---3-------0244421033544443024589999999999886312220020788998760572678999999
Q ss_pred HHHHH-HCCCEEEEEECCCC
Q ss_conf 99887-58977999805777
Q 000452 785 VLLGL-LNSKTVLYVTHQVE 803 (1495)
Q Consensus 785 ~i~~~-l~~kTvIlvTH~~~ 803 (1495)
+.... ..+.|++++.|...
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~ 173 (242)
T d1tf7a1 154 LVARLKQIGATTVMTTERIE 173 (242)
T ss_dssp HHHHHHHHTCEEEEEEECSS
T ss_pred HHHHHHHCCCCEEEEECCCC
T ss_conf 99999863971688421025
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.12 E-value=0.65 Score=19.31 Aligned_cols=22 Identities=36% Similarity=0.483 Sum_probs=20.0
Q ss_pred EEEEEECCCCCHHHHHHHHHCC
Q ss_conf 9999813786399999998379
Q 000452 648 RVAVCGTVGSGKSSLLSCILGE 669 (1495)
Q Consensus 648 ~vaIvG~~GSGKStLl~~ilGe 669 (1495)
+++++|..|+|||||++.+++.
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998993999999999719
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=85.08 E-value=0.19 Score=23.73 Aligned_cols=40 Identities=23% Similarity=0.397 Sum_probs=26.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECC
Q ss_conf 9399999699989889999983356698637999697389
Q 000452 1275 EKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDIS 1314 (1495)
Q Consensus 1275 GekigIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~ 1314 (1495)
.-+|||+|+.|||||||+..|.+.+....-++-+=-+|.+
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDps 93 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPS 93 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 3289743899998999999999999756983322037776
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=85.01 E-value=0.016 Score=32.90 Aligned_cols=32 Identities=16% Similarity=0.232 Sum_probs=26.7
Q ss_pred CCCCCEEEEECCCEEEEEECCCCCHHHHHHHHH
Q ss_conf 411311786288099998137863999999983
Q 000452 635 TLKDINLKVFHGMRVAVCGTVGSGKSSLLSCIL 667 (1495)
Q Consensus 635 ~L~~inl~i~~G~~vaIvG~~GSGKStLl~~il 667 (1495)
..++.++.+.+| +++|+|++||||||++.||.
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~ 45 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFV 45 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHH
T ss_pred CEEEEEEECCCC-EEEEECCCCCCHHHHHHHHH
T ss_conf 870279974998-08998899998799999999
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=84.85 E-value=0.2 Score=23.53 Aligned_cols=25 Identities=28% Similarity=0.415 Sum_probs=21.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9399999699989889999983356
Q 000452 1275 EKKTGIVGRTGSGKSTLIQTLFRIV 1299 (1495)
Q Consensus 1275 GekigIVGrTGSGKSTLl~~L~rl~ 1299 (1495)
.=+|+|+|++++|||||+++|++--
T Consensus 16 ~~~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 16 GIEVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9789998899998999999985898
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.83 E-value=0.39 Score=21.15 Aligned_cols=29 Identities=14% Similarity=0.194 Sum_probs=24.8
Q ss_pred ECCCEEEEEECCCCCHHHHHHHHHCCCCC
Q ss_conf 28809999813786399999998379879
Q 000452 644 FHGMRVAVCGTVGSGKSSLLSCILGEVPK 672 (1495)
Q Consensus 644 ~~G~~vaIvG~~GSGKStLl~~ilGe~~~ 672 (1495)
.+|.++++-|.-||||||+.+.|...+..
T Consensus 1 ~kGk~I~iEG~DGsGKST~~~~L~~~L~~ 29 (214)
T d1tmka_ 1 GRGKLILIEGLDRTGKTTQCNILYKKLQP 29 (214)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 97689999899888699999999999971
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.81 E-value=0.67 Score=19.21 Aligned_cols=23 Identities=43% Similarity=0.599 Sum_probs=20.3
Q ss_pred CEEEEEECCCCCHHHHHHHHHCC
Q ss_conf 09999813786399999998379
Q 000452 647 MRVAVCGTVGSGKSSLLSCILGE 669 (1495)
Q Consensus 647 ~~vaIvG~~GSGKStLl~~ilGe 669 (1495)
-+++++|..|+|||||++.+++.
T Consensus 6 ~ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 6 LRLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
T ss_conf 79999998997899999999719
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.71 E-value=0.68 Score=19.17 Aligned_cols=22 Identities=36% Similarity=0.638 Sum_probs=19.5
Q ss_pred EEEEEECCCCCHHHHHHHHHCC
Q ss_conf 9999813786399999998379
Q 000452 648 RVAVCGTVGSGKSSLLSCILGE 669 (1495)
Q Consensus 648 ~vaIvG~~GSGKStLl~~ilGe 669 (1495)
+++++|..|+|||||++.+.+.
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998997899999999739
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=84.60 E-value=0.68 Score=19.14 Aligned_cols=31 Identities=19% Similarity=0.216 Sum_probs=18.5
Q ss_pred EEEEECCCEEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 1786288099998137863999999983798
Q 000452 640 NLKVFHGMRVAVCGTVGSGKSSLLSCILGEV 670 (1495)
Q Consensus 640 nl~i~~G~~vaIvG~~GSGKStLl~~ilGe~ 670 (1495)
|+.-++...++++||+|+||||.+.-|.-.+
T Consensus 5 ~~~~~~p~vi~lvGptGvGKTTTiAKLAa~~ 35 (213)
T d1vmaa2 5 NVPPEPPFVIMVVGVNGTGKTTSCGKLAKMF 35 (213)
T ss_dssp CCCSSSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 6799999899998999998899999999999
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.55 E-value=0.32 Score=21.91 Aligned_cols=22 Identities=41% Similarity=0.668 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999699989889999983356
Q 000452 1278 TGIVGRTGSGKSTLIQTLFRIV 1299 (1495)
Q Consensus 1278 igIVGrTGSGKSTLl~~L~rl~ 1299 (1495)
|.|+||+||||+||.+.|..-.
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~ 24 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEH 24 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 9999999999999999999748
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.54 E-value=0.69 Score=19.12 Aligned_cols=29 Identities=28% Similarity=0.338 Sum_probs=22.1
Q ss_pred EEEEEECCCCCHHHHHHHHHC-----CCCCCCCE
Q ss_conf 999981378639999999837-----98798758
Q 000452 648 RVAVCGTVGSGKSSLLSCILG-----EVPKISGT 676 (1495)
Q Consensus 648 ~vaIvG~~GSGKStLl~~ilG-----e~~~~~G~ 676 (1495)
+++++|..|+|||||++.+.+ ++.++.|.
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~ 40 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIED 40 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 8999999997999999999739988545766452
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=84.54 E-value=0.37 Score=21.40 Aligned_cols=24 Identities=29% Similarity=0.348 Sum_probs=21.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399999699989889999983356
Q 000452 1276 KKTGIVGRTGSGKSTLIQTLFRIV 1299 (1495)
Q Consensus 1276 ekigIVGrTGSGKSTLl~~L~rl~ 1299 (1495)
-.|+|-|..||||||+++.|.+-.
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 199988999988899999999870
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.27 E-value=0.24 Score=23.02 Aligned_cols=27 Identities=37% Similarity=0.505 Sum_probs=24.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 893999996999898899999833566
Q 000452 1274 GEKKTGIVGRTGSGKSTLIQTLFRIVE 1300 (1495)
Q Consensus 1274 ~GekigIVGrTGSGKSTLl~~L~rl~e 1300 (1495)
.+..|+|-|..||||||+++.|...++
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 998899987888779999999999973
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.21 E-value=0.38 Score=21.27 Aligned_cols=21 Identities=29% Similarity=0.407 Sum_probs=18.7
Q ss_pred EEEEEECCCCCHHHHHHHHHC
Q ss_conf 999981378639999999837
Q 000452 648 RVAVCGTVGSGKSSLLSCILG 668 (1495)
Q Consensus 648 ~vaIvG~~GSGKStLl~~ilG 668 (1495)
+++++|+.|+|||||++.+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899598999999982
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=84.08 E-value=0.42 Score=20.91 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999969998988999998335
Q 000452 1277 KTGIVGRTGSGKSTLIQTLFRI 1298 (1495)
Q Consensus 1277 kigIVGrTGSGKSTLl~~L~rl 1298 (1495)
.|||+|+..+|||||+++|++-
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 7999969985499999999823
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.07 E-value=0.44 Score=20.72 Aligned_cols=36 Identities=19% Similarity=0.292 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHH
Q ss_conf 47999999999860399786742867766988899999
Q 000452 745 GGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLF 782 (1495)
Q Consensus 745 GGQKqRIaLARAly~~adI~LLDDp~SalD~~t~~~if 782 (1495)
+||..==.+.+..|++++.+++ .++.-|..+-..+.
T Consensus 72 ~G~e~~~~~~~~~~~~~~~~i~--v~d~~~~~s~~~~~ 107 (186)
T d2f7sa1 72 AGQERFRSLTTAFFRDAMGFLL--MFDLTSQQSFLNVR 107 (186)
T ss_dssp ESHHHHHHHHHHHHTTCCEEEE--EEETTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCEEEE--EEECCCCCCCEEEE
T ss_conf 8645668899999726988999--99632345411454
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=84.02 E-value=0.18 Score=24.03 Aligned_cols=40 Identities=13% Similarity=0.135 Sum_probs=28.7
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEECCCCCC
Q ss_conf 0999981378639999999837987987589984947999267756
Q 000452 647 MRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWI 692 (1495)
Q Consensus 647 ~~vaIvG~~GSGKStLl~~ilGe~~~~~G~i~i~g~~ayv~Q~pwi 692 (1495)
-.++|+|++||||||+.+.+...+... +-+.+.++|+.+-
T Consensus 5 pIIgIaG~SGSGKTTva~~l~~i~~~~------~v~~~iI~~Dsfy 44 (288)
T d1a7ja_ 5 PIISVTGSSGAGTSTVKHTFDQIFRRE------GVKAVSIEGDAFH 44 (288)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHH------TCCEEEEEGGGGB
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHC------CCCEEEEECCCCC
T ss_conf 899998999780999999999997156------9976999477787
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.01 E-value=0.39 Score=21.15 Aligned_cols=22 Identities=41% Similarity=0.585 Sum_probs=19.7
Q ss_pred EEEEEECCCCCHHHHHHHHHCC
Q ss_conf 9999813786399999998379
Q 000452 648 RVAVCGTVGSGKSSLLSCILGE 669 (1495)
Q Consensus 648 ~vaIvG~~GSGKStLl~~ilGe 669 (1495)
+++++|+.|+|||||++.+++.
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990989999999829
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=83.85 E-value=0.46 Score=20.61 Aligned_cols=23 Identities=43% Similarity=0.489 Sum_probs=19.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 39999969998988999998335
Q 000452 1276 KKTGIVGRTGSGKSTLIQTLFRI 1298 (1495)
Q Consensus 1276 ekigIVGrTGSGKSTLl~~L~rl 1298 (1495)
-.|||+|..||||||+.+.|-.+
T Consensus 4 ~IIgitG~~gSGKstva~~l~~~ 26 (191)
T d1uf9a_ 4 IIIGITGNIGSGKSTVAALLRSW 26 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
T ss_conf 89999898877899999999987
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.62 E-value=0.37 Score=21.39 Aligned_cols=23 Identities=30% Similarity=0.342 Sum_probs=20.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 39999969998988999998335
Q 000452 1276 KKTGIVGRTGSGKSTLIQTLFRI 1298 (1495)
Q Consensus 1276 ekigIVGrTGSGKSTLl~~L~rl 1298 (1495)
.||++||++|+|||||++.|.+-
T Consensus 1 ~KI~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 1 GKLLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 98999999999999999999589
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=83.50 E-value=0.36 Score=21.42 Aligned_cols=24 Identities=33% Similarity=0.475 Sum_probs=21.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399999699989889999983356
Q 000452 1276 KKTGIVGRTGSGKSTLIQTLFRIV 1299 (1495)
Q Consensus 1276 ekigIVGrTGSGKSTLl~~L~rl~ 1299 (1495)
..|-++|++||||||+.+.|..-+
T Consensus 3 k~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 3 RNIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 749998999999999999999996
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=83.49 E-value=0.45 Score=20.67 Aligned_cols=40 Identities=25% Similarity=0.224 Sum_probs=29.8
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC-CC-CCCEEEECCEE
Q ss_conf 089399999699989889999983356-69-86379996973
Q 000452 1273 PGEKKTGIVGRTGSGKSTLIQTLFRIV-EP-AAGQILIDGID 1312 (1495)
Q Consensus 1273 ~~GekigIVGrTGSGKSTLl~~L~rl~-ep-~~G~I~IDG~d 1312 (1495)
++|..|-+.|.+|||||||.+.|..-. +. ..-.+.+||-+
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~ 63 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 63 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHH
T ss_conf 998699998999999899999999887774275089975367
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=83.48 E-value=0.38 Score=21.26 Aligned_cols=23 Identities=30% Similarity=0.564 Sum_probs=18.9
Q ss_pred EEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 99998137863999999983798
Q 000452 648 RVAVCGTVGSGKSSLLSCILGEV 670 (1495)
Q Consensus 648 ~vaIvG~~GSGKStLl~~ilGe~ 670 (1495)
-++++|+.||||||+.+.+...+
T Consensus 2 ~I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
T ss_conf 39998999998899999999983
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=83.29 E-value=0.48 Score=20.39 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=19.6
Q ss_pred EEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 99998137863999999983798
Q 000452 648 RVAVCGTVGSGKSSLLSCILGEV 670 (1495)
Q Consensus 648 ~vaIvG~~GSGKStLl~~ilGe~ 670 (1495)
-+||+|.+.+|||||+.+|+|..
T Consensus 7 nIaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 7 NIGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEEECCCCCHHHHHHHHHHHH
T ss_conf 99999345884999999997034
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=83.28 E-value=0.42 Score=20.91 Aligned_cols=21 Identities=33% Similarity=0.569 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999996999898899999833
Q 000452 1277 KTGIVGRTGSGKSTLIQTLFR 1297 (1495)
Q Consensus 1277 kigIVGrTGSGKSTLl~~L~r 1297 (1495)
.|||+|..||||||+.+.|-.
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999888887889999999998
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=83.26 E-value=0.68 Score=19.13 Aligned_cols=27 Identities=26% Similarity=0.308 Sum_probs=16.5
Q ss_pred EEECCCEEEEEECCCCCHHHHHHHHHC
Q ss_conf 862880999981378639999999837
Q 000452 642 KVFHGMRVAVCGTVGSGKSSLLSCILG 668 (1495)
Q Consensus 642 ~i~~G~~vaIvG~~GSGKStLl~~ilG 668 (1495)
-.-.|.=+.++|++|+||||+...++.
T Consensus 11 v~~~g~gvli~G~sg~GKS~la~~l~~ 37 (169)
T d1ko7a2 11 VDVYGVGVLITGDSGIGKSETALELIK 37 (169)
T ss_dssp EEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred EEECCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 999999999980899999999999998
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=83.22 E-value=0.48 Score=20.45 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=19.7
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 099998137863999999983798
Q 000452 647 MRVAVCGTVGSGKSSLLSCILGEV 670 (1495)
Q Consensus 647 ~~vaIvG~~GSGKStLl~~ilGe~ 670 (1495)
+.+.|+|+.||||||+.+.|.-.+
T Consensus 1 M~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 1 MNIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 989998899998799999999987
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.21 E-value=0.77 Score=18.71 Aligned_cols=21 Identities=29% Similarity=0.643 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999996999898899999833
Q 000452 1277 KTGIVGRTGSGKSTLIQTLFR 1297 (1495)
Q Consensus 1277 kigIVGrTGSGKSTLl~~L~r 1297 (1495)
||.++|.+|+|||||++.+.+
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899798999999970
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.96 E-value=0.51 Score=20.23 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=18.1
Q ss_pred EEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 99998137863999999983798
Q 000452 648 RVAVCGTVGSGKSSLLSCILGEV 670 (1495)
Q Consensus 648 ~vaIvG~~GSGKStLl~~ilGe~ 670 (1495)
.++|.||.||||||..+.|...+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99997999999899999999986
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=82.87 E-value=0.34 Score=21.70 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=19.3
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 099998137863999999983798
Q 000452 647 MRVAVCGTVGSGKSSLLSCILGEV 670 (1495)
Q Consensus 647 ~~vaIvG~~GSGKStLl~~ilGe~ 670 (1495)
..+.|.||.||||||+.+.|.-.+
T Consensus 4 m~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 4 LKVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 299998899999899999999987
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=82.77 E-value=0.8 Score=18.58 Aligned_cols=24 Identities=13% Similarity=0.195 Sum_probs=14.1
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 999981378639999999837987
Q 000452 648 RVAVCGTVGSGKSSLLSCILGEVP 671 (1495)
Q Consensus 648 ~vaIvG~~GSGKStLl~~ilGe~~ 671 (1495)
-+.+.||.|+||+|+...+..++.
T Consensus 26 ~lLl~Gp~G~GKtt~a~~~a~~l~ 49 (207)
T d1a5ta2 26 ALLIQALPGMGDDALIYALSRYLL 49 (207)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 798889998759999999998210
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=82.76 E-value=0.31 Score=21.99 Aligned_cols=27 Identities=37% Similarity=0.433 Sum_probs=23.4
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCC
Q ss_conf 809999813786399999998379879
Q 000452 646 GMRVAVCGTVGSGKSSLLSCILGEVPK 672 (1495)
Q Consensus 646 G~~vaIvG~~GSGKStLl~~ilGe~~~ 672 (1495)
...+.++||.||||||+.++|.+++..
T Consensus 32 P~~ilL~GpPGtGKT~la~~la~~~~~ 58 (273)
T d1gvnb_ 32 PTAFLLGGQPGSGKTSLRSAIFEETQG 58 (273)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 979998897998899999999998651
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=82.73 E-value=0.51 Score=20.19 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=19.2
Q ss_pred EEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 99998137863999999983798
Q 000452 648 RVAVCGTVGSGKSSLLSCILGEV 670 (1495)
Q Consensus 648 ~vaIvG~~GSGKStLl~~ilGe~ 670 (1495)
.+.|+|+.||||||+.+.|.-.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999899999999987
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.72 E-value=0.54 Score=20.00 Aligned_cols=24 Identities=33% Similarity=0.411 Sum_probs=20.9
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 999981378639999999837987
Q 000452 648 RVAVCGTVGSGKSSLLSCILGEVP 671 (1495)
Q Consensus 648 ~vaIvG~~GSGKStLl~~ilGe~~ 671 (1495)
+++++|..|+|||||++.+.+.-.
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~~ 26 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVED 26 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999989899399999999818856
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=82.65 E-value=0.52 Score=20.15 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=21.4
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 0999981378639999999837987
Q 000452 647 MRVAVCGTVGSGKSSLLSCILGEVP 671 (1495)
Q Consensus 647 ~~vaIvG~~GSGKStLl~~ilGe~~ 671 (1495)
-.++|-||+||||||..+.|..++.
T Consensus 4 i~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 4 IQIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 5999789998798999999999969
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.60 E-value=0.81 Score=18.53 Aligned_cols=21 Identities=38% Similarity=0.631 Sum_probs=19.0
Q ss_pred EEEEEECCCCCHHHHHHHHHC
Q ss_conf 999981378639999999837
Q 000452 648 RVAVCGTVGSGKSSLLSCILG 668 (1495)
Q Consensus 648 ~vaIvG~~GSGKStLl~~ilG 668 (1495)
+++++|..|+|||||++.+.+
T Consensus 7 KI~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999099999999970
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=82.46 E-value=0.023 Score=31.56 Aligned_cols=35 Identities=20% Similarity=0.252 Sum_probs=28.3
Q ss_pred CEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 100016885089399999699989889999983356
Q 000452 1264 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIV 1299 (1495)
Q Consensus 1264 vL~~is~~i~~GekigIVGrTGSGKSTLl~~L~rl~ 1299 (1495)
..++.++.+.+| .+.|+|++||||||++.+|.-..
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L 48 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTAL 48 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred CEEEEEEECCCC-EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 870279974998-08998899998799999999996
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=82.36 E-value=0.5 Score=20.28 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=19.1
Q ss_pred EEEEEECCCCCHHHHHHHHHCC
Q ss_conf 9999813786399999998379
Q 000452 648 RVAVCGTVGSGKSSLLSCILGE 669 (1495)
Q Consensus 648 ~vaIvG~~GSGKStLl~~ilGe 669 (1495)
+++++|+.|+|||||++.+.+.
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998989999999719
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.30 E-value=0.45 Score=20.62 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=19.7
Q ss_pred EEEEEECCCCCHHHHHHHHHCC
Q ss_conf 9999813786399999998379
Q 000452 648 RVAVCGTVGSGKSSLLSCILGE 669 (1495)
Q Consensus 648 ~vaIvG~~GSGKStLl~~ilGe 669 (1495)
+++++|..|+|||||++.+.+.
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999997998999999999809
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.27 E-value=0.46 Score=20.60 Aligned_cols=22 Identities=32% Similarity=0.578 Sum_probs=19.7
Q ss_pred EEEEEECCCCCHHHHHHHHHCC
Q ss_conf 9999813786399999998379
Q 000452 648 RVAVCGTVGSGKSSLLSCILGE 669 (1495)
Q Consensus 648 ~vaIvG~~GSGKStLl~~ilGe 669 (1495)
+++++|..|+|||||++.+.++
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999996789999999868
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=82.20 E-value=0.43 Score=20.78 Aligned_cols=22 Identities=32% Similarity=0.419 Sum_probs=19.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 3999996999898899999833
Q 000452 1276 KKTGIVGRTGSGKSTLIQTLFR 1297 (1495)
Q Consensus 1276 ekigIVGrTGSGKSTLl~~L~r 1297 (1495)
..|+|+|+.|+|||||++.|.+
T Consensus 1 k~V~ivG~~~~GKTsLl~~l~~ 22 (207)
T d2fh5b1 1 RAVLFVGLCDSGKTLLFVRLLT 22 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHC
T ss_conf 9899999999898999999980
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=82.12 E-value=0.45 Score=20.63 Aligned_cols=24 Identities=13% Similarity=0.227 Sum_probs=18.6
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 099998137863999999983798
Q 000452 647 MRVAVCGTVGSGKSSLLSCILGEV 670 (1495)
Q Consensus 647 ~~vaIvG~~GSGKStLl~~ilGe~ 670 (1495)
+.+.++|+.||||||+.+.+.-.+
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 988998899998899999999994
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=82.10 E-value=0.23 Score=23.14 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=19.7
Q ss_pred EEEEEECCCCCHHHHHHHHHCC
Q ss_conf 9999813786399999998379
Q 000452 648 RVAVCGTVGSGKSSLLSCILGE 669 (1495)
Q Consensus 648 ~vaIvG~~GSGKStLl~~ilGe 669 (1495)
-++++|.+++|||||+..|++.
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~~ 26 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTYV 26 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 9999947898499999999998
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=82.06 E-value=0.72 Score=18.94 Aligned_cols=28 Identities=18% Similarity=0.240 Sum_probs=24.3
Q ss_pred EECCCEEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 6288099998137863999999983798
Q 000452 643 VFHGMRVAVCGTVGSGKSSLLSCILGEV 670 (1495)
Q Consensus 643 i~~G~~vaIvG~~GSGKStLl~~ilGe~ 670 (1495)
+++|+++.|.|+.|+|||+|..-+.-..
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a~~~ 58 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSCVNL 58 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 6288599999179999899999999999
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.03 E-value=0.58 Score=19.73 Aligned_cols=29 Identities=21% Similarity=0.140 Sum_probs=24.4
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 08939999969998988999998335669
Q 000452 1273 PGEKKTGIVGRTGSGKSTLIQTLFRIVEP 1301 (1495)
Q Consensus 1273 ~~GekigIVGrTGSGKSTLl~~L~rl~ep 1301 (1495)
+.|..|.|-|.-||||||+++.|..-+..
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~~ 29 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALCA 29 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 98059999899888999999999999987
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.97 E-value=0.42 Score=20.87 Aligned_cols=46 Identities=24% Similarity=0.294 Sum_probs=30.5
Q ss_pred EEEEEEECCCCCCCCCCCCEEEEECCCEEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 83389835999999411311786288099998137863999999983798
Q 000452 621 ADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEV 670 (1495)
Q Consensus 621 ~~~~fsw~~~~~~~~L~~inl~i~~G~~vaIvG~~GSGKStLl~~ilGe~ 670 (1495)
+++.+..+.+. -..|+.++ .|=..|+|+|+.++|||+|++.++|..
T Consensus 11 ~~~~l~~~~e~-l~~l~~~~---~~v~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 11 TNGRLMANPEA-LKILSAIT---QPMVVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp ETTEEEECHHH-HHHHHTCC---SBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred CCCEEEECHHH-HHHHHCCC---CCEEEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99949989999-99997079---987999988999997999999980998
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.90 E-value=0.68 Score=19.16 Aligned_cols=27 Identities=30% Similarity=0.283 Sum_probs=23.6
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 850893999996999898899999833
Q 000452 1271 TFPGEKKTGIVGRTGSGKSTLIQTLFR 1297 (1495)
Q Consensus 1271 ~i~~GekigIVGrTGSGKSTLl~~L~r 1297 (1495)
=+++|+.+-|.|++|||||||..-+.-
T Consensus 30 Gi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 30 GVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp SEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 986996999983899988999999999
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=81.90 E-value=0.51 Score=20.20 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999996999898899999833566
Q 000452 1277 KTGIVGRTGSGKSTLIQTLFRIVE 1300 (1495)
Q Consensus 1277 kigIVGrTGSGKSTLl~~L~rl~e 1300 (1495)
.|.+||++||||||+.+.|.+...
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 999989999999999999999997
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.88 E-value=0.53 Score=20.03 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=19.7
Q ss_pred EEEEEECCCCCHHHHHHHHHCC
Q ss_conf 9999813786399999998379
Q 000452 648 RVAVCGTVGSGKSSLLSCILGE 669 (1495)
Q Consensus 648 ~vaIvG~~GSGKStLl~~ilGe 669 (1495)
+++|+|..|+|||||++.+++.
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999993999999999629
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.87 E-value=0.55 Score=19.95 Aligned_cols=22 Identities=36% Similarity=0.533 Sum_probs=18.9
Q ss_pred EEEEEECCCCCHHHHHHHHHCC
Q ss_conf 9999813786399999998379
Q 000452 648 RVAVCGTVGSGKSSLLSCILGE 669 (1495)
Q Consensus 648 ~vaIvG~~GSGKStLl~~ilGe 669 (1495)
+++++|..|+|||||++.+.+.
T Consensus 8 KI~vvG~~~vGKSSli~~~~~~ 29 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVTN 29 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999997999999999849
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.76 E-value=0.58 Score=19.71 Aligned_cols=23 Identities=26% Similarity=0.393 Sum_probs=20.0
Q ss_pred CEEEEEECCCCCHHHHHHHHHCC
Q ss_conf 09999813786399999998379
Q 000452 647 MRVAVCGTVGSGKSSLLSCILGE 669 (1495)
Q Consensus 647 ~~vaIvG~~GSGKStLl~~ilGe 669 (1495)
=+++|+|..|+|||||++.+++.
T Consensus 6 iKivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 6 IKCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
T ss_conf 99999999997999999999749
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=81.74 E-value=0.47 Score=20.50 Aligned_cols=25 Identities=32% Similarity=0.323 Sum_probs=19.7
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 0999981378639999999837987
Q 000452 647 MRVAVCGTVGSGKSSLLSCILGEVP 671 (1495)
Q Consensus 647 ~~vaIvG~~GSGKStLl~~ilGe~~ 671 (1495)
.-+.|+|++|||||++++.++-..-
T Consensus 51 ~H~~I~G~tGsGKT~~l~~li~~~~ 75 (433)
T d1e9ra_ 51 RHLLVNGATGTGKSVLLRELAYTGL 75 (433)
T ss_dssp GCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 6589990799968999999999998
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=81.67 E-value=0.52 Score=20.14 Aligned_cols=31 Identities=23% Similarity=0.388 Sum_probs=22.6
Q ss_pred EEECCCEEEEEECCCCCHHHHHHHHHCCCCC
Q ss_conf 8628809999813786399999998379879
Q 000452 642 KVFHGMRVAVCGTVGSGKSSLLSCILGEVPK 672 (1495)
Q Consensus 642 ~i~~G~~vaIvG~~GSGKStLl~~ilGe~~~ 672 (1495)
..++|..+++.|+.|||||||.+.++..+-.
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~ 59 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIGH 59 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 5799829999668776588999998764223
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=81.42 E-value=0.49 Score=20.36 Aligned_cols=28 Identities=25% Similarity=0.279 Sum_probs=19.9
Q ss_pred EECCCEEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 6288099998137863999999983798
Q 000452 643 VFHGMRVAVCGTVGSGKSSLLSCILGEV 670 (1495)
Q Consensus 643 i~~G~~vaIvG~~GSGKStLl~~ilGe~ 670 (1495)
++++..+.+.||.||||||+.+.|...+
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 4678289998999998799999999986
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=81.37 E-value=0.88 Score=18.20 Aligned_cols=24 Identities=21% Similarity=0.101 Sum_probs=13.7
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 099998137863999999983798
Q 000452 647 MRVAVCGTVGSGKSSLLSCILGEV 670 (1495)
Q Consensus 647 ~~vaIvG~~GSGKStLl~~ilGe~ 670 (1495)
..++++||+|+||||.+.-|...+
T Consensus 11 ~vi~lvGp~GvGKTTTiaKLA~~~ 34 (207)
T d1ls1a2 11 NLWFLVGLQGSGKTTTAAKLALYY 34 (207)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 689998999998899999999999
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.34 E-value=0.57 Score=19.82 Aligned_cols=23 Identities=26% Similarity=0.262 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999699989889999983356
Q 000452 1277 KTGIVGRTGSGKSTLIQTLFRIV 1299 (1495)
Q Consensus 1277 kigIVGrTGSGKSTLl~~L~rl~ 1299 (1495)
.|||-|.+|||||||...|....
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L 51 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHL 51 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99837998788999999999999
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.33 E-value=0.59 Score=19.69 Aligned_cols=110 Identities=15% Similarity=0.228 Sum_probs=55.5
Q ss_pred EEEEEECCCCCHHHHHHHHH-CCCCC----CCCEEEECCEEEEECCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHCCH
Q ss_conf 99998137863999999983-79879----87589984947999267756675588997219989999999999981928
Q 000452 648 RVAVCGTVGSGKSSLLSCIL-GEVPK----ISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMDRERYNAVLDACSLE 722 (1495)
Q Consensus 648 ~vaIvG~~GSGKStLl~~il-Ge~~~----~~G~i~i~g~~ayv~Q~pwi~~gTIreNIlfG~~~d~~~y~~vi~ac~L~ 722 (1495)
+++++|..|+|||||++.+. ++.+. +.|..... ....+ ....
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~-~~~~~------~~~~-------------------------- 50 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRE-RAVDI------DGER-------------------------- 50 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEE-EEEEE------TTEE--------------------------
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCE-EEEEE------ECCC--------------------------
T ss_conf 99999999929899999997399988647642422001-34456------4022--------------------------
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHH---HHHHHHH-HCCCEEEEE
Q ss_conf 888634789864014798866647999999999860399786742867766988899999---9999887-589779998
Q 000452 723 KDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLF---KEVLLGL-LNSKTVLYV 798 (1495)
Q Consensus 723 ~Dl~~lp~Gd~T~IGe~G~nLSGGQKqRIaLARAly~~adI~LLDDp~SalD~~t~~~if---~~~i~~~-l~~kTvIlv 798 (1495)
....+ ....|++..+-...+..|+++|.+++ .++.-|..+-..+- .++.... ..+..+++|
T Consensus 51 ---------~~~~~----~~~~~~~~~~~~~~~~~~~~~d~~il--v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lv 115 (165)
T d1z06a1 51 ---------IKIQL----WDTAGQERFRKSMVQHYYRNVHAVVF--VYDMTNMASFHSLPAWIEECKQHLLANDIPRILV 115 (165)
T ss_dssp ---------EEEEE----EECCCSHHHHTTTHHHHHTTCCEEEE--EEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEE
T ss_pred ---------EEEEE----EECCCCHHHCCCCCEEEECCCCCEEE--EEEEEHHHHHHHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf ---------17999----85057311032121036427882499--9985235666655421278776325899719999
Q ss_pred ECCCCCC
Q ss_conf 0577742
Q 000452 799 THQVEFL 805 (1495)
Q Consensus 799 TH~~~~l 805 (1495)
-+..+..
T Consensus 116 gnK~Dl~ 122 (165)
T d1z06a1 116 GNKCDLR 122 (165)
T ss_dssp EECTTCG
T ss_pred ECCCCCH
T ss_conf 2135500
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=81.31 E-value=0.89 Score=18.18 Aligned_cols=117 Identities=16% Similarity=0.150 Sum_probs=69.0
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEEECCCCCCCCCCHHHHCCCCCCCCH
Q ss_conf 50893999996999898899999833566986379996973899997777224389815676787757770499989999
Q 000452 1272 FPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRTRLSIIPQDPVMFEGTVRSNVDPLEEYTD 1351 (1495)
Q Consensus 1272 i~~GekigIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~GTIR~NLdp~~~~sD 1351 (1495)
++.+..|-|+|+.||||||+.+.|..-+ |-..|+.-| -+|..+ ... ....-++.+.++.....+|
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~----g~~~is~g~-------llr~~~---~~~-~~~~~~~~~~~~~~~~~~~ 69 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY----GYTHLSTGD-------LLRAEV---SSG-SARGKMLSEIMEKGQLVPL 69 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT----CCEEEEHHH-------HHHHHH---HHT-CHHHHHHHHHHTTTCCCCH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH----CCEEEECCH-------HHHHHH---HHH-HHHHHHHHHHHHHCCCCCH
T ss_conf 4678289998999998799999999986----984683347-------899999---876-7651456777763137762
Q ss_pred HHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 999999998399678971008865212269998890399999999987259986998758
Q 000452 1352 EQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEA 1411 (1495)
Q Consensus 1352 ~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nlS~GQrQll~LARALLk~~~ILiLDEa 1411 (1495)
+.+...+... +.......+..+-++ +.....|.-.+.+.+.....++.+|.+
T Consensus 70 ~~~~~~~~~~-----l~~~~~~~~g~ildg---~pr~~~qa~~~~~~~~~~~~~~~~~~~ 121 (194)
T d3adka_ 70 ETVLDMLRDA-----MVAKVDTSKGFLIDG---YPREVKQGEEFERKIGQPTLLLYVDAG 121 (194)
T ss_dssp HHHHHHHHHH-----HHTTTTTCSCEEEES---CCSSHHHHHHHHHHTCCCSEEEEEECC
T ss_pred HEEEEEHHHH-----HHHCCCCCCCCEEEE---CCCHHHHHHHHHHHHCCCCCHHCCCCC
T ss_conf 2244102456-----640322356602431---110157899999983775200003331
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=81.29 E-value=0.62 Score=19.49 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=20.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 93999996999898899999833
Q 000452 1275 EKKTGIVGRTGSGKSTLIQTLFR 1297 (1495)
Q Consensus 1275 GekigIVGrTGSGKSTLl~~L~r 1297 (1495)
.=||.+||+.|+|||||++.+.+
T Consensus 16 ~~kI~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 16 EVRILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEEEECCCCCCHHHHHHHHHC
T ss_conf 77999999999899999999964
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=81.26 E-value=0.48 Score=20.45 Aligned_cols=34 Identities=24% Similarity=0.319 Sum_probs=28.5
Q ss_pred CCEEEEECCCEEEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 3117862880999981378639999999837987
Q 000452 638 DINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVP 671 (1495)
Q Consensus 638 ~inl~i~~G~~vaIvG~~GSGKStLl~~ilGe~~ 671 (1495)
|.=+.+.+|++.+|.|+.|+|||+|+..|..-..
T Consensus 35 D~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~ 68 (289)
T d1xpua3 35 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 68 (289)
T ss_dssp HHHSCCBTTCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred EECCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 4125645787556867999887899999999775
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.24 E-value=0.73 Score=18.91 Aligned_cols=25 Identities=36% Similarity=0.501 Sum_probs=21.4
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCC
Q ss_conf 9999813786399999998379879
Q 000452 648 RVAVCGTVGSGKSSLLSCILGEVPK 672 (1495)
Q Consensus 648 ~vaIvG~~GSGKStLl~~ilGe~~~ 672 (1495)
+++++|..|+|||||++.+.+....
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~~~ 29 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVHDS 29 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCCCT
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCC
T ss_conf 9999998992999999999728677
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=81.14 E-value=0.62 Score=19.48 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=16.7
Q ss_pred CEEEEEECCCCCHHHHHHHHHC
Q ss_conf 0999981378639999999837
Q 000452 647 MRVAVCGTVGSGKSSLLSCILG 668 (1495)
Q Consensus 647 ~~vaIvG~~GSGKStLl~~ilG 668 (1495)
.+++|+|+.||||||..+.+..
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 8999979999889999999998
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.12 E-value=0.6 Score=19.59 Aligned_cols=21 Identities=33% Similarity=0.562 Sum_probs=19.0
Q ss_pred EEEEEECCCCCHHHHHHHHHC
Q ss_conf 999981378639999999837
Q 000452 648 RVAVCGTVGSGKSSLLSCILG 668 (1495)
Q Consensus 648 ~vaIvG~~GSGKStLl~~ilG 668 (1495)
+++++|..|+|||||++.+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899499999999973
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=81.10 E-value=0.7 Score=19.04 Aligned_cols=27 Identities=26% Similarity=0.283 Sum_probs=22.9
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 880999981378639999999837987
Q 000452 645 HGMRVAVCGTVGSGKSSLLSCILGEVP 671 (1495)
Q Consensus 645 ~G~~vaIvG~~GSGKStLl~~ilGe~~ 671 (1495)
.+..+.|.|+.|+|||||++.++.+..
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~~ 54 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINELN 54 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 598799986999829999999999779
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=81.06 E-value=0.9 Score=18.12 Aligned_cols=35 Identities=17% Similarity=0.303 Sum_probs=29.0
Q ss_pred EEECCCEEEEEECCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf 86288099998137863999999983798798758
Q 000452 642 KVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGT 676 (1495)
Q Consensus 642 ~i~~G~~vaIvG~~GSGKStLl~~ilGe~~~~~G~ 676 (1495)
-++.|..+.+.|+.|||||+|...+........|.
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~ 90 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGV 90 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCE
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 86663369996488748899999999987548988
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=80.93 E-value=0.56 Score=19.85 Aligned_cols=26 Identities=15% Similarity=0.253 Sum_probs=21.6
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 80999981378639999999837987
Q 000452 646 GMRVAVCGTVGSGKSSLLSCILGEVP 671 (1495)
Q Consensus 646 G~~vaIvG~~GSGKStLl~~ilGe~~ 671 (1495)
+.-+.++||+|+|||.|.+++..++.
T Consensus 49 ~~~iLl~GPpG~GKT~lAkalA~~~~ 74 (309)
T d1ofha_ 49 PKNILMIGPTGVGKTEIARRLAKLAN 74 (309)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 86699989999888899999862132
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=80.84 E-value=0.92 Score=18.06 Aligned_cols=100 Identities=23% Similarity=0.326 Sum_probs=56.4
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEECCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHC
Q ss_conf 99981378639999999837987987589984947999267756675588997219989999999999981928888634
Q 000452 649 VAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMDRERYNAVLDACSLEKDLEIL 728 (1495)
Q Consensus 649 vaIvG~~GSGKStLl~~ilGe~~~~~G~i~i~g~~ayv~Q~pwi~~gTIreNIlfG~~~d~~~y~~vi~ac~L~~Dl~~l 728 (1495)
+.|.|++|||||-|++++..++... | -.+.|++= .+. ..++...+..-
T Consensus 39 l~l~G~~G~GKTHLl~A~~~~~~~~-~-----~~~~~~~~---------~~~--------~~~~~~~~~~~--------- 86 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGNEAKKR-G-----YRVIYSSA---------DDF--------AQAMVEHLKKG--------- 86 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHHT-T-----CCEEEEEH---------HHH--------HHHHHHHHHHT---------
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCC-C-----CCEEEECH---------HHH--------HHHHHHHHHCC---------
T ss_conf 7998889983999999999874467-6-----50488443---------787--------99999998716---------
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCC-CCHHHHHHHHHHHHHHHH-CCCEEEEEECCC
Q ss_conf 78986401479886664799999999986039978674286776-698889999999998875-897799980577
Q 000452 729 SFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSA-VDAHTGSHLFKEVLLGLL-NSKTVLYVTHQV 802 (1495)
Q Consensus 729 p~Gd~T~IGe~G~nLSGGQKqRIaLARAly~~adI~LLDDp~Sa-lD~~t~~~if~~~i~~~l-~~kTvIlvTH~~ 802 (1495)
+. .-.+..|.++|++++||.=.- -+..++..+|. ++.... .++.+|+.+...
T Consensus 87 ------------------~~---~~~~~~~~~~dll~iDDi~~i~~~~~~~~~lf~-lin~~~~~~~~iiits~~~ 140 (213)
T d1l8qa2 87 ------------------TI---NEFRNMYKSVDLLLLDDVQFLSGKERTQIEFFH-IFNTLYLLEKQIILASDRH 140 (213)
T ss_dssp ------------------CH---HHHHHHHHTCSEEEEECGGGGTTCHHHHHHHHH-HHHHHHHTTCEEEEEESSC
T ss_pred ------------------CH---HHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHH-HHHHHHHCCCEEEEECCCC
T ss_conf ------------------62---667898762130101126550586577889999-9998763166389954875
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=80.80 E-value=0.57 Score=19.80 Aligned_cols=23 Identities=35% Similarity=0.586 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999699989889999983356
Q 000452 1277 KTGIVGRTGSGKSTLIQTLFRIV 1299 (1495)
Q Consensus 1277 kigIVGrTGSGKSTLl~~L~rl~ 1299 (1495)
.|||+|...+|||||+++|.+..
T Consensus 7 nIaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 7 NIGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEEECCCCCHHHHHHHHHHHH
T ss_conf 99999345884999999997034
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=80.75 E-value=0.6 Score=19.61 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=14.3
Q ss_pred EEEEEECCCCCHHHHHHHHHCC
Q ss_conf 9999813786399999998379
Q 000452 648 RVAVCGTVGSGKSSLLSCILGE 669 (1495)
Q Consensus 648 ~vaIvG~~GSGKStLl~~ilGe 669 (1495)
.++++|+.||||||..+.|.-.
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~ 23 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEK 23 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999879999989999999998
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.69 E-value=0.56 Score=19.85 Aligned_cols=22 Identities=23% Similarity=0.487 Sum_probs=19.6
Q ss_pred EEEEEECCCCCHHHHHHHHHCC
Q ss_conf 9999813786399999998379
Q 000452 648 RVAVCGTVGSGKSSLLSCILGE 669 (1495)
Q Consensus 648 ~vaIvG~~GSGKStLl~~ilGe 669 (1495)
+++++|..|+|||||++.+.+.
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=80.59 E-value=0.41 Score=20.97 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=21.2
Q ss_pred ECCCEEEEEECCCCCHHHHHHHHHCC
Q ss_conf 28809999813786399999998379
Q 000452 644 FHGMRVAVCGTVGSGKSSLLSCILGE 669 (1495)
Q Consensus 644 ~~G~~vaIvG~~GSGKStLl~~ilGe 669 (1495)
++.-+++++|..|+|||||++.+.+.
T Consensus 15 ~k~~KI~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 15 NKELRILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 96689999999999889999887338
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=80.56 E-value=0.62 Score=19.51 Aligned_cols=25 Identities=28% Similarity=0.282 Sum_probs=20.6
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 0999981378639999999837987
Q 000452 647 MRVAVCGTVGSGKSSLLSCILGEVP 671 (1495)
Q Consensus 647 ~~vaIvG~~GSGKStLl~~ilGe~~ 671 (1495)
+++.|+|+.||||||+.+.|...+.
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 1999989899898999999999998
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=80.35 E-value=0.66 Score=19.25 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999969998988999998335669
Q 000452 1277 KTGIVGRTGSGKSTLIQTLFRIVEP 1301 (1495)
Q Consensus 1277 kigIVGrTGSGKSTLl~~L~rl~ep 1301 (1495)
.|.|.|..||||||+++.|...+.-
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L~~ 27 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 9999898998989999999999987
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.32 E-value=0.95 Score=17.93 Aligned_cols=30 Identities=27% Similarity=0.410 Sum_probs=22.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC-----CCCCCCCEE
Q ss_conf 999996999898899999833-----566986379
Q 000452 1277 KTGIVGRTGSGKSTLIQTLFR-----IVEPAAGQI 1306 (1495)
Q Consensus 1277 kigIVGrTGSGKSTLl~~L~r-----l~ep~~G~I 1306 (1495)
||.+||..|+|||||++.+.. -++|+.|..
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~ 41 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDS 41 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 89999999979999999997399885457664520
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=80.28 E-value=0.55 Score=19.91 Aligned_cols=21 Identities=24% Similarity=0.403 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999996999898899999833
Q 000452 1277 KTGIVGRTGSGKSTLIQTLFR 1297 (1495)
Q Consensus 1277 kigIVGrTGSGKSTLl~~L~r 1297 (1495)
||.+||..|+|||||++.+.+
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999198999999973
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=80.11 E-value=0.77 Score=18.71 Aligned_cols=27 Identities=30% Similarity=0.353 Sum_probs=23.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 893999996999898899999833566
Q 000452 1274 GEKKTGIVGRTGSGKSTLIQTLFRIVE 1300 (1495)
Q Consensus 1274 ~GekigIVGrTGSGKSTLl~~L~rl~e 1300 (1495)
.|..|.|-|.-||||||++..|...++
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 987899989988879999999999999
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.08 E-value=0.59 Score=19.66 Aligned_cols=21 Identities=33% Similarity=0.613 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999996999898899999833
Q 000452 1277 KTGIVGRTGSGKSTLIQTLFR 1297 (1495)
Q Consensus 1277 kigIVGrTGSGKSTLl~~L~r 1297 (1495)
||.+||+.|+|||||++.+.+
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999698999999970
|